Citrus Sinensis ID: 037699

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200---
Protein Sequence
MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQKS
Secondary Structure (PSIPRED)
ccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccEEEccccccccccccEEEcccccccccccHHHHccccccEEccccccccccccHHHHHHccccccccccccccccccccccEEEcccccccEEEccccccccccccEEEccccEEEEEccccccccccccEEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHccccccEEEEcccccccccccHHHccccccEEEEccccccccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHccHHHHHHHccccccHHHccccccEEEEcccccccccccHHHHcccccccEEEcccccccccccHHHcccccccEEEccccccccccccHHcccccc
Coil and Loop (DISEMBL)
mpwvfglsDHLVFLDLSlnnfqgpiprglgnltslryldLSANISILQYLSGTfsssvgnltsiQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLdsvnlsnntlfgSLFEIHFAKLsklkyfdvsqnsltlnvspdwippfqlkelnlescnlvgnrfpswllsqks
Flexible Loop (DISEMBL)
MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNrfpswllsqks
Low Complexity Region (SEG)
MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQlssldsvnlsnntlFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQKS
Disordered region (IsUnstruct)
**WVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLL****
Disordered Region (DISOPRED)
MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQK*
Disordered Region (DISEMBL)
MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQKS
Disordered Region (DISPRO)
MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWL*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	203	2.2.26 [Sep-21-2011]
O80809	720	Leucine-rich repeat recep	no	no	0.847	0.238	0.33	2e-13
C0LGV1	1135	LRR receptor-like serine/	no	no	0.906	0.162	0.334	3e-13
Q9C9H7	847	Receptor-like protein 12	no	no	0.788	0.188	0.354	1e-12
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.960	0.156	0.314	2e-12
Q9FRS6	1029	Leucine-rich repeat recep	no	no	0.926	0.182	0.294	3e-12
Q9LRT1	1016	Probably inactive leucine	no	no	0.891	0.178	0.322	6e-12
C0LGP4	1010	Probable LRR receptor-lik	no	no	0.798	0.160	0.318	7e-12
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.827	0.154	0.355	1e-11
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.916	0.156	0.309	2e-11
Q9LHP4	1141	Receptor-like protein kin	no	no	0.788	0.140	0.316	2e-11

>sp|O80809|CLV2_ARATH Leucine-rich repeat receptor-like protein CLAVATA2 OS=Arabidopsis thaliana GN=CLV2 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/200 (33%), Positives = 106/200 (53%), Gaps = 28/200 (14%)

Query: 11  LVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLS 70
           LV LDLS N+F G IP  +  L SL+ L LS N+     L+G   + +GNLT +Q +DLS
Sbjct: 317 LVLLDLSHNSFSGDIPLRITELKSLQALRLSHNL-----LTGDIPARIGNLTYLQVIDLS 371

Query: 71  FNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLS-- 128
            N L G I  +     +L ++ +S++N++ EI   L+      LD L++L+++   +S  
Sbjct: 372 HNALTGSIPLNIVGCFQLLALMISNNNLSGEIQPELD-----ALDSLKILDISNNHISGE 426

Query: 129 ---------SLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQL 179
                    SL+ V++S+N L G+L E    K S LKY  +++N  +  + P W+  F  
Sbjct: 427 IPLTLAGLKSLEIVDISSNNLSGNLNEA-ITKWSNLKYLSLARNKFSGTL-PSWLFKFD- 483

Query: 180 KELNLESCNLVGNRFPSWLL 199
               ++  +   NRF SW +
Sbjct: 484 ---KIQMIDYSSNRF-SWFI 499

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance. Involved in controlling the stem cell population size in shoot and root apical meristems, and during organ development. Promotes the formation of CLV1 multimers.
Arabidopsis thaliana (taxid: 3702)

>sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/215 (33%), Positives = 107/215 (49%), Gaps = 31/215 (14%)

Query: 1   MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGN 60
           +P   G   +L FLDLS NN  GP+P  + N   L+ L+LS N      L G    S+ +
Sbjct: 483 IPKGIGFLQNLSFLDLSENNLSGPVPLEISNCRQLQMLNLSNNT-----LQGYLPLSLSS 537

Query: 61  LTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVL 120
           LT +Q LD+S N+L GKI  S G L  L  + LS ++ N EI   L   +      L++L
Sbjct: 538 LTKLQVLDVSSNDLTGKIPDSLGHLISLNRLILSKNSFNGEIPSSLGHCTN-----LQLL 592

Query: 121 EMTE-----------WQLSSLD-SVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLN 168
           +++            + +  LD ++NLS N+L G + E   + L++L   D+S N L+ +
Sbjct: 593 DLSSNNISGTIPEELFDIQDLDIALNLSWNSLDGFIPE-RISALNRLSVLDISHNMLSGD 651

Query: 169 VSPDWIPPFQLKEL-NLESCNLVGNRFPSWLLSQK 202
           +S        L  L NL S N+  NRF  +L   K
Sbjct: 652 LS-------ALSGLENLVSLNISHNRFSGYLPDSK 679

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score = 72.8 bits (177), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/172 (35%), Positives = 90/172 (52%), Gaps = 12/172 (6%)

Query: 1   MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGN 60
           +P   G   HL  ++L  N F G IP  +GNL  LR+L L+ N+     L+G   SS+GN
Sbjct: 126 IPSSLGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNV-----LTGEIPSSLGN 180

Query: 61  LTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKIL----NIFSTCILDG 116
           L+ +  L+L  N L GKI  S G L +LR++ L+ +N+  EI   L    N+    +   
Sbjct: 181 LSRLVNLELFSNRLVGKIPDSIGDLKQLRNLSLASNNLIGEIPSSLGNLSNLVHLVLTHN 240

Query: 117 LEVLEMTE--WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT 166
             V E+      L  L  ++  NN+L G++  I FA L+KL  F +S N+ T
Sbjct: 241 QLVGEVPASIGNLIELRVMSFENNSLSGNI-PISFANLTKLSIFVLSSNNFT 291

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score = 72.4 bits (176), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 110/229 (48%), Gaps = 34/229 (14%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSA---------------NISI 46
           PW FG  D+L+ LDLS NN  GPIP  L NLTSL  L L +               NI  
Sbjct: 89  PW-FGRFDNLIHLDLSSNNLVGPIPTALSNLTSLESLFLFSNQLTGEIPSQLGSLVNIRS 147

Query: 47  LQY----LSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEI 102
           L+     L G    ++GNL ++Q L L+   L G I +  GRL +++S+ L  + +   I
Sbjct: 148 LRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPI 207

Query: 103 SKILN------IFSTC--ILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSK 154
              L       +F+    +L+G    E+   +L +L+ +NL+NN+L G +      ++S+
Sbjct: 208 PAELGNCSDLTVFTAAENMLNGTIPAELG--RLENLEILNLANNSLTGEIPS-QLGEMSQ 264

Query: 155 LKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPS--WLLSQ 201
           L+Y  +  N L   +         L+ L+L + NL G   P   W +SQ
Sbjct: 265 LQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTG-EIPEEFWNMSQ 312

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FRS6|PXL1_ARATH Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana GN=PXL1 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 94/207 (45%), Gaps = 19/207 (9%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNL 61
           P+  G++  L  ++ S NNF G +P  LGN T+L  LD         Y  G+  SS  NL
Sbjct: 142 PYGLGMATGLTHVNASSNNFSGFLPEDLGNATTLEVLDFRGG-----YFEGSVPSSFKNL 196

Query: 62  TSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLE 121
            +++ L LS NN  GK+    G L  L ++ L ++    EI +     +      L V  
Sbjct: 197 KNLKFLGLSGNNFGGKVPKVIGELSSLETIILGYNGFMGEIPEEFGKLTRLQYLDLAVGN 256

Query: 122 MTEW------QLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIP 175
           +T        QL  L +V L  N L G L       ++ L + D+S N +T  +      
Sbjct: 257 LTGQIPSSLGQLKQLTTVYLYQNRLTGKLPR-ELGGMTSLVFLDLSDNQITGEI------ 309

Query: 176 PFQLKEL-NLESCNLVGNRFPSWLLSQ 201
           P ++ EL NL+  NL+ N+    + S+
Sbjct: 310 PMEVGELKNLQLLNLMRNQLTGIIPSK 336

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 97/208 (46%), Gaps = 27/208 (12%)

Query: 1   MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGN 60
           +P   GL  HL  +DLS N+F G +PR L  L SL + D+S N+     LSG F   +G+
Sbjct: 263 LPSDIGLCPHLNRVDLSSNHFSGELPRTLQKLKSLNHFDVSNNL-----LSGDFPPWIGD 317

Query: 61  LTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKIL-------------N 107
           +T +  LD S N L GK+ +S   L  L+ + LS + ++ E+ + L             N
Sbjct: 318 MTGLVHLDFSSNELTGKLPSSISNLRSLKDLNLSENKLSGEVPESLESCKELMIVQLKGN 377

Query: 108 IFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTL 167
            FS  I DG   L + E        ++ S N L GS+          L   D+S NSLT 
Sbjct: 378 DFSGNIPDGFFDLGLQE--------MDFSGNGLTGSIPRGSSRLFESLIRLDLSHNSLTG 429

Query: 168 NVSPDWIPPFQLKELNLESCNLVGNRFP 195
           ++  +      ++ LNL S N    R P
Sbjct: 430 SIPGEVGLFIHMRYLNL-SWNHFNTRVP 456

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score = 70.5 bits (171), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 93/198 (46%), Gaps = 36/198 (18%)

Query: 1   MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGN 60
           +P   G    L +LD+ +N  +GPIP GL N + L  L L +N      L G+  S +G+
Sbjct: 106 IPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRLLNLRLDSN-----RLGGSVPSELGS 160

Query: 61  LTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVL 120
           LT++  L+L  NN+ GK+ TS G L  L  + LSH+N+  EI               +V 
Sbjct: 161 LTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEGEIPS-------------DVA 207

Query: 121 EMTE-WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPD---WIPP 176
           ++T+ W L       ++NN  F  +F      LS LK   +  N  +  + PD    +P 
Sbjct: 208 QLTQIWSLQL-----VANN--FSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLP- 259

Query: 177 FQLKELNLESCNLVGNRF 194
                 NL S N+ GN F
Sbjct: 260 ------NLLSFNMGGNYF 271

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score = 69.7 bits (169), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/194 (35%), Positives = 93/194 (47%), Gaps = 26/194 (13%)

Query: 11  LVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLS 70
           LV LDLSLN+F G +P  LGN TSL YLDLS N       SG      G+L ++  L L 
Sbjct: 102 LVTLDLSLNSFSGLLPSTLGNCTSLEYLDLSNN-----DFSGEVPDIFGSLQNLTFLYLD 156

Query: 71  FNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTE------ 124
            NNL G I  S G L +L  + +S++N++  I ++L   S      LE L +        
Sbjct: 157 RNNLSGLIPASVGGLIELVDLRMSYNNLSGTIPELLGNCSK-----LEYLALNNNKLNGS 211

Query: 125 -----WQLSSLDSVNLSNNTLFGSLFEIHF--AKLSKLKYFDVSQNSLTLNVSPDWIPPF 177
                + L +L  + +SNN+L G L   HF  +   KL   D+S N     V P+     
Sbjct: 212 LPASLYLLENLGELFVSNNSLGGRL---HFGSSNCKKLVSLDLSFNDFQGGVPPEIGNCS 268

Query: 178 QLKELNLESCNLVG 191
            L  L +  CNL G
Sbjct: 269 SLHSLVMVKCNLTG 282

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score = 69.3 bits (168), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 104/210 (49%), Gaps = 24/210 (11%)

Query: 1   MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGN 60
           +P   G +  L  L LS N   G IPR +G LTSL  L+L+AN+       G     +G+
Sbjct: 464 LPAEIGNAASLKRLVLSDNQLTGEIPREIGKLTSLSVLNLNANM-----FQGKIPVELGD 518

Query: 61  LTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEI-SKILNIFSTCILDGLE- 118
            TS+ TLDL  NNL+G+I      L +L+ + LS++N++  I SK    F    +  L  
Sbjct: 519 CTSLTTLDLGSNNLQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDLSF 578

Query: 119 -----VLEMTEWQLSS-----------LDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQ 162
                + +++  +LS            L  ++LSNN L G +     ++L+ L   D+S 
Sbjct: 579 LQHHGIFDLSYNRLSGPIPEELGECLVLVEISLSNNHLSGEI-PASLSRLTNLTILDLSG 637

Query: 163 NSLTLNVSPDWIPPFQLKELNLESCNLVGN 192
           N+LT ++  +     +L+ LNL +  L G+
Sbjct: 638 NALTGSIPKEMGNSLKLQGLNLANNQLNGH 667

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score = 69.3 bits (168), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 91/183 (49%), Gaps = 23/183 (12%)

Query: 1   MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGN 60
           +P   G    + FLD S N   G +P  +G+ + L+ +DLS N      L G+  + V +
Sbjct: 482 IPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCSELQMIDLSNN-----SLEGSLPNPVSS 536

Query: 61  LTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVL 120
           L+ +Q LD+S N   GKI  S GRL  L  + LS +  +  I   L + S     GL++L
Sbjct: 537 LSGLQVLDVSANQFSGKIPASLGRLVSLNKLILSKNLFSGSIPTSLGMCS-----GLQLL 591

Query: 121 EMTEWQLSS-----------LD-SVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLN 168
           ++   +LS            L+ ++NLS+N L G +     A L+KL   D+S N L  +
Sbjct: 592 DLGSNELSGEIPSELGDIENLEIALNLSSNRLTGKIPS-KIASLNKLSILDLSHNMLEGD 650

Query: 169 VSP 171
           ++P
Sbjct: 651 LAP 653

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
209970614	790	M18-S5p [Malus floribunda]	0.980	0.251	0.403	1e-29
225464712	1021	PREDICTED: receptor-like protein 12-like	0.980	0.194	0.358	2e-29
350284767	965	receptor-like protein [Malus sieversii]	0.980	0.206	0.396	6e-29
297735802	1344	unnamed protein product [Vitis vinifera]	0.980	0.148	0.379	2e-26
359490572	975	PREDICTED: probable LRR receptor-like se	0.970	0.202	0.355	1e-25
225466147	1024	PREDICTED: LRR receptor-like serine/thre	0.945	0.187	0.348	2e-25
255543957	889	serine-threonine protein kinase, plant-t	0.950	0.217	0.372	4e-25
315436720	1020	verticillium wilt resistance-like protei	0.916	0.182	0.339	1e-24
356561552	1019	PREDICTED: LRR receptor-like serine/thre	0.965	0.192	0.348	3e-24
356561578	1258	PREDICTED: LRR receptor-like serine/thre	0.965	0.155	0.357	3e-24

>gi|209970614|gb|ACJ03069.1| M18-S5p [Malus floribunda]

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/233 (40%), Positives = 133/233 (57%), Gaps = 34/233 (14%)

Query: 1   MP-WVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYL-----DLSANISILQY----- 49
           MP WVF L + LV L L+   FQGPIP    N+T L++L     D ++ I    Y     
Sbjct: 258 MPKWVFSLKN-LVSLHLNDCGFQGPIPSISQNMTCLKFLSLLENDFNSTIPEWLYSLNNL 316

Query: 50  ---------LSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMN- 99
                    L G  SSS+GN+TS+  LDL +N LEGKI  S G LCKL+ + LS ++   
Sbjct: 317 ESLLLSYNGLHGEISSSIGNMTSLVNLDLKYNQLEGKIPNSLGHLCKLKVLDLSKNHFTV 376

Query: 100 QEISKILNIFSTCILDGLEVLE-----------MTEWQLSSLDSVNLSNNTLFGSLFEIH 148
           Q  S+I    S C  DG++ L            M+   +S+L+ +++S N+L G++ E+ 
Sbjct: 377 QRPSEIFESLSRCGPDGIKSLSLRNTNISGPIPMSLGNMSNLEKLDISYNSLEGAVSEVS 436

Query: 149 FAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQ 201
           F+KL+KLK+F    NSLTL  S DW+PPFQL+ L L+S +L G ++P WL +Q
Sbjct: 437 FSKLTKLKHFIAKGNSLTLKTSQDWVPPFQLEILQLDSWHL-GPKWPMWLRTQ 488

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464712|ref|XP_002276171.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/254 (35%), Positives = 127/254 (50%), Gaps = 55/254 (21%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN------------ISILQ- 48
           PW+F LS  LV LDLS+N  QG IP   G + SL YLDL  N             S++  
Sbjct: 278 PWLFNLSSSLVHLDLSINQIQGLIPDTFGEMVSLEYLDLFFNQLEGEIPQSLTSTSLVHL 337

Query: 49  -----YLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEIS 103
                +L G+   + G++TS+  LDLS N LEG I  SF  LC L+ V L  +++  ++ 
Sbjct: 338 DLSVNHLHGSIPDTFGHMTSLSYLDLSLNQLEGGIPKSFKNLCSLQMVMLLSNSLTAQLP 397

Query: 104 KILNIFSTCILDGLEVLEMTEW-----------------------------------QLS 128
           + +    +C  D LEVL ++ W                                   QLS
Sbjct: 398 EFVQNSLSCSKDTLEVLVLS-WNQFTGSFPNFTGFSVLGHLYIDHNRLNGTFPEHIGQLS 456

Query: 129 SLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCN 188
            L+ + +S N+L G++ E H + LSKL + D+S NSL L +SP+W PPFQ+  L L SC 
Sbjct: 457 QLEVLEISGNSLHGNITEAHLSSLSKLYWLDLSSNSLALELSPEWTPPFQVGYLGLLSCK 516

Query: 189 LVGNRFPSWLLSQK 202
           + G  FP WL +QK
Sbjct: 517 M-GPNFPGWLQTQK 529

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284767|gb|AEQ27755.1| receptor-like protein [Malus sieversii]

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 92/232 (39%), Positives = 132/232 (56%), Gaps = 33/232 (14%)

Query: 1   MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYL-----DLSANISILQY------ 49
           + WVF L + LV L L+   FQGPIP    N+T L+ L     D ++ I    Y      
Sbjct: 259 LKWVFSLKN-LVSLHLNDCGFQGPIPSISQNMTCLKVLSLLENDFNSTIPEWLYSLNNLE 317

Query: 50  --------LSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMN-Q 100
                   L G  SSS+GN+TS+  LDL++N LEGKI  S G LCKL+ + LS ++   Q
Sbjct: 318 SLLLSYNGLHGEISSSIGNMTSLVNLDLNYNQLEGKIPNSLGHLCKLKVLDLSKNHFTVQ 377

Query: 101 EISKILNIFSTCILDGLEVLE-----------MTEWQLSSLDSVNLSNNTLFGSLFEIHF 149
             S+I    S C  DG++ L            M+   +S+L+ +++S N+L G++ E+ F
Sbjct: 378 RPSEIFESLSRCGPDGIKSLSLRNTNISGPIPMSLGNVSNLEKLDISYNSLEGAVSEVSF 437

Query: 150 AKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQ 201
           +KL+KLK+F    NSLTL  S DW+PPFQL+ L L+S +L G ++P WL +Q
Sbjct: 438 SKLTKLKHFIAKGNSLTLKTSQDWVPPFQLEILQLDSWHL-GPKWPMWLRTQ 488

Source: Malus sieversii

Species: Malus sieversii

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735802|emb|CBI18489.3| unnamed protein product [Vitis vinifera]

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/229 (37%), Positives = 126/229 (55%), Gaps = 30/229 (13%)

Query: 1    MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN----------------- 43
            +P   G   +L  LDLS N F+GPIP  LG L  L +L L  N                 
Sbjct: 966  LPNWLGELKNLKALDLSNNKFEGPIPASLGTLQHLEFLYLLENELNGSLPDSIGQLSQVQ 1025

Query: 44   --ISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQE 101
              I    +LSG+   S+G L+ ++ LD+S N+L G +  S G+L +L+ + +S ++++  
Sbjct: 1026 HLIVYSNHLSGSLPDSIGQLSQLEQLDVSSNHLSGSLPDSIGQLSQLQGLQVSSNHLSGS 1085

Query: 102  ISKILNIFSTCILDGLEV--------LEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLS 153
            +   +   S   L GL V        L  +  QLS L+ +++S+N L GSL E HF KLS
Sbjct: 1086 LPDSIGQLSQ--LQGLHVSSNHLSGSLPDSIGQLSQLEQLDVSSNHLSGSLSEQHFLKLS 1143

Query: 154  KLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQK 202
            KL+Y  +  NS  LNVSP+W+P FQ+ EL++ SC+L G  FP+WL SQK
Sbjct: 1144 KLEYLYMGSNSFHLNVSPNWVPLFQVDELDMCSCHL-GPSFPAWLQSQK 1191

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490572|ref|XP_003634116.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera]

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/253 (35%), Positives = 127/253 (50%), Gaps = 56/253 (22%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANI----------SILQYLS 51
           PW+F  +  LV LDLS N+ Q   P   GN+ SL YLDLS N           S L +L 
Sbjct: 259 PWLFNFNSSLVHLDLSYNHLQASPPDAFGNMVSLEYLDLSWNQLKGEIPKSFSSSLVFLD 318

Query: 52  -------GTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISK 104
                  G+   + GN+TS++T++L+ N LEG+I  SF  LC L+ + L  +N+   + K
Sbjct: 319 LSNNQLQGSIPDTFGNMTSLRTVNLTRNQLEGEIPKSFNNLCNLQILKLHRNNLAGVLVK 378

Query: 105 ILNIFSTCILDGLEVLEMTE----------------------------------WQLSSL 130
            L     C  D LE+L+++                                    QL+ L
Sbjct: 379 NL---LACANDTLEILDLSHNQFIGSLPDLIGFSSLTRLHLGHNQLNGTLPESIAQLAQL 435

Query: 131 DSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNS-LTLNVSPDWIPPFQLKELNLESCNL 189
           + + + +N+L G++ E H   LSKL+  D+S NS LTLN+S DW+P FQL  + L SC L
Sbjct: 436 ELLKIPSNSLQGTVSEAHLFSLSKLQRLDLSFNSLLTLNLSSDWVPQFQLTHIFLASCKL 495

Query: 190 VGNRFPSWLLSQK 202
            G RFP WL +QK
Sbjct: 496 -GPRFPGWLRTQK 507

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225466147|ref|XP_002270042.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/235 (34%), Positives = 122/235 (51%), Gaps = 43/235 (18%)

Query: 1   MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGN 60
           +P   G    L +LD+S N   G IP  +G +  L +LDLS N      L G+   +VGN
Sbjct: 307 IPDTIGDMGSLAYLDISENQLWGSIPDTVGKMVLLSHLDLSLN-----QLQGSIPDTVGN 361

Query: 61  LTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVL 120
           + S++ L LS N+L+G+I  S   LC L+ + L  +N++ +++     F  C  D LE L
Sbjct: 362 MVSLKKLSLSENHLQGEIPKSLSNLCNLQELELDRNNLSGQLAPD---FVACANDTLETL 418

Query: 121 EMTE----------------------------------WQLSSLDSVNLSNNTLFGSLFE 146
            +++                                   QL++L S+++++N+L G++ E
Sbjct: 419 FLSDNQFSGSVPALIGFSSLRELHLDFNQLNGTLPESVGQLANLQSLDIASNSLQGTISE 478

Query: 147 IHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQ 201
            H   LS L Y ++S NSLT N+S DW+PPFQL  L L SC L G RFPSWL +Q
Sbjct: 479 AHLFNLSWLSYLNLSSNSLTFNMSLDWVPPFQLLSLRLASCKL-GPRFPSWLRTQ 532

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543957|ref|XP_002513041.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223548052|gb|EEF49544.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 88/236 (37%), Positives = 125/236 (52%), Gaps = 43/236 (18%)

Query: 3   WVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLT 62
           W+F L + L  L LS N+F   IP  L NLTSL  L LS N       + +  S++GNLT
Sbjct: 267 WIFSL-EKLTSLCLSNNSFVEEIPIHLLNLTSLEKLVLSHN-----NFNSSIPSAIGNLT 320

Query: 63  SIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEM 122
           S+  LDLS N+LEG I  +   LC LR + LS + ++QEI+++  I S C  + L++L++
Sbjct: 321 SLNLLDLSGNSLEGGIPIASKNLCNLRLLDLSFNKLSQEINEVFEILSKCAPERLKLLDL 380

Query: 123 TE-----------------------------------WQLSSLDSVNLSNNTLFGSLFEI 147
           +                                     +L  L+ +++S N L G + EI
Sbjct: 381 SSNHLPGHFTNRLEQFKNLVFLSVYDNSISGPIPEILGELKFLEDIDISKNLLKGDVSEI 440

Query: 148 HFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQ-LKELNLESCNLVGNRFPSWLLSQK 202
           HFA L+ L+YF  + N L+L VSPDW+PPFQ L  L+L     VG +FPSW+ S K
Sbjct: 441 HFANLTNLRYFYAAGNQLSLRVSPDWVPPFQGLTSLHLRYWQ-VGPQFPSWIRSLK 495

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315436720|gb|ADU18533.1| verticillium wilt resistance-like protein [Gossypium barbadense]

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/253 (33%), Positives = 126/253 (49%), Gaps = 67/253 (26%)

Query: 11  LVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLS 70
           L +L+L  NNF+  IP  L  LTSL +L+L +N     Y  G+ S+   NLTS+ TLDLS
Sbjct: 298 LRYLNLYWNNFKSAIPSWLYGLTSLEFLNLGSN-----YFHGSISNGFQNLTSLTTLDLS 352

Query: 71  FNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFST--CILDGLEVLEMTEWQ-- 126
            N L G +  S G LC L+ + LS  ++++++S+IL   S+  C+L+GLE L +   +  
Sbjct: 353 DNELTGAVPNSMGSLCSLKKIKLSGLHLSRDLSEILQALSSPGCLLNGLESLYLDSCEIF 412

Query: 127 ---------------------------------LSSLDSVNLSNNTLFGSL--------- 144
                                            L+SL +++LS N + G+L         
Sbjct: 413 GHLTDRILLFKNLADLSLSRNSISGSIPASLGLLASLRTLDLSQNRVNGTLPESIGQLWK 472

Query: 145 ---------------FEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNL 189
                           E+HFA L++L+ F  S N L L  SP+W+PPFQL  + L S +L
Sbjct: 473 MEKLWLSHNMLEGVVSEVHFANLTRLRLFQASGNPLVLEASPEWVPPFQLGVMALSSWHL 532

Query: 190 VGNRFPSWLLSQK 202
            G +FPSWL SQ+
Sbjct: 533 -GPKFPSWLRSQR 544

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561552|ref|XP_003549045.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Glycine max]

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 97/278 (34%), Positives = 131/278 (47%), Gaps = 82/278 (29%)

Query: 3   WVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN------------ISILQYL 50
           W+F L   LV L L  N FQGPIP G+ NLT L+ LDLS N            +  L++L
Sbjct: 267 WIFKLKK-LVSLQLLDNGFQGPIPGGIRNLTLLQNLDLSFNSFSSSIPDCLYGLHRLKFL 325

Query: 51  S-------GTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEIS 103
           +       GT S ++GNLTS+  LDLS N LEG I TS G LC LR + LS+  +NQ+++
Sbjct: 326 NLMGNNLHGTISDALGNLTSLVELDLSHNQLEGNIPTSLGNLCNLRVIDLSYLKLNQQVN 385

Query: 104 KILNIFSTCILDGLEVLEMTEWQLS-----------SLDSVNLSNNTLFGSLFEIHFAKL 152
           ++L I + CI  GL  L +   +LS           ++D++  SNN++ G+L    F KL
Sbjct: 386 ELLEILAPCISHGLTRLAVQSSRLSGNLTDHIGAFKNIDTLLFSNNSIGGALPR-SFGKL 444

Query: 153 SKLKYFDVSQ-------------------------------------------------N 163
           S L+Y D+S                                                  N
Sbjct: 445 SSLRYLDLSMNKFSGNPFESLRSLSKLLSLHIDGNLFHGVVKEDDLANLTSLTEIHASGN 504

Query: 164 SLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQ 201
           + TL V P+WIP FQL  L + S  L G  FP W+ SQ
Sbjct: 505 NFTLTVGPNWIPNFQLNYLEVTSWQL-GPSFPLWIQSQ 541

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561578|ref|XP_003549058.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Glycine max]

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/260 (35%), Positives = 121/260 (46%), Gaps = 64/260 (24%)

Query: 1   MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGN 60
           +P   G    LV L LS N  +G IP  LGNLTSL  LDLS N      L G   + +GN
Sbjct: 374 IPTSLGNLTSLVKLQLSNNQLEGTIPTSLGNLTSLVELDLSGN-----QLEGNIPTYLGN 428

Query: 61  LTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVL 120
           LTS+  L LS++ LEG I TS G LC LR + LS+  +NQ+++++L I + CI  GL  L
Sbjct: 429 LTSLVELHLSYSQLEGNIPTSLGNLCNLRVIDLSYLKLNQQVNELLEILAPCISHGLTRL 488

Query: 121 EMT------------------EW-----------------QLSSLDSVNLSNNTLFGSLF 145
            +                   EW                 +LSSL  ++LS N   G+ F
Sbjct: 489 AVQSSRLSGNLTDHIGAFKNIEWLDFFNNSIGGALPRSFGKLSSLRYLDLSMNKFSGNPF 548

Query: 146 E----------IH--------------FAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKE 181
           E          +H               A L+ L  F  S N+ TL V P+WIP FQL  
Sbjct: 549 ESLGSLSKLLFLHIDGNLFHRVVKEDDLANLTSLTEFAASGNNFTLKVGPNWIPNFQLTY 608

Query: 182 LNLESCNLVGNRFPSWLLSQ 201
           L++ S  L G  FP W+ SQ
Sbjct: 609 LDVTSWQLGGPSFPLWIQSQ 628

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
TAIR|locus:2090754	711	RLP43 "receptor like protein 4	0.541	0.154	0.379	3e-16
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.541	0.123	0.396	3.1e-15
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.482	0.112	0.403	1.3e-14
TAIR|locus:2129246	891	RLP50 "receptor like protein 5	0.719	0.163	0.324	1.7e-14
TAIR|locus:2119445	719	AT4G13820 [Arabidopsis thalian	0.492	0.139	0.379	3.3e-14
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.487	0.104	0.4	4.1e-14
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.433	0.091	0.430	5.4e-14
TAIR|locus:2044767	905	AT2G34930 "AT2G34930" [Arabido	0.822	0.184	0.321	1.3e-13
TAIR|locus:2169404	330	PGIP2 "polygalacturonase inhib	0.857	0.527	0.323	3.5e-13
TAIR|locus:2096349	860	RLP31 "receptor like protein 3	0.940	0.222	0.295	4.2e-10

TAIR|locus:2090754 RLP43 "receptor like protein 43" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 3.0e-16, Sum P(2) = 3.0e-16
 Identities = 44/116 (37%), Positives = 64/116 (55%)

Query:     1 MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGN 60
             +P   G   HL FLDL  N F G +P  +GNL+ L  L+LS N    ++  G F SS+G 
Sbjct:   161 VPSSIGNLSHLTFLDLYCNQFSGQVPSSIGNLSHLTTLELSFN----RFF-GQFPSSIGG 215

Query:    61 LTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKIL-NIFSTCILD 115
             L+ + TL+L  NN  G+I +S G L  L S++L  +N + +I   + N+     LD
Sbjct:   216 LSHLTTLNLFVNNFLGQIPSSIGNLSNLTSLYLCKNNFSGQIPSFIGNLSQLTRLD 271

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
 Identities = 46/116 (39%), Positives = 64/116 (55%)

Query:     1 MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGN 60
             +P   G   HL FL LS N F G IP  +GNL+ L +L LS N    ++  G F SS+G 
Sbjct:   122 IPSSIGNLSHLTFLGLSGNRFFGQIPSSIGNLSHLTFLGLSGN----RFF-GQFPSSIGG 176

Query:    61 LTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEI-SKILNIFSTCILD 115
             L+++  L LS+N   G+I +S G L +L  ++LS +N   EI S   N+     LD
Sbjct:   177 LSNLTNLHLSYNKYSGQIPSSIGNLSQLIVLYLSVNNFYGEIPSSFGNLNQLTRLD 232

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
 Identities = 42/104 (40%), Positives = 58/104 (55%)

Query:     6 GLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQ 65
             G   HL  LDLS NNF G IP  LGNL  L  L L  N        G   SS+GNL+ + 
Sbjct:   132 GNLSHLTTLDLSGNNFSGWIPSSLGNLFHLTSLHLYDN-----NFGGEIPSSLGNLSYLT 186

Query:    66 TLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEIS-KILNI 108
              LDLS NN  G+I +SFG L +L  + L ++ ++  +  +++N+
Sbjct:   187 FLDLSTNNFVGEIPSSFGSLNQLSILRLDNNKLSGNLPLEVINL 230

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2129246 RLP50 "receptor like protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 1.7e-14, Sum P(2) = 1.7e-14
 Identities = 51/157 (32%), Positives = 73/157 (46%)

Query:    10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDL 69
             HL  L L+   F G IP  LGNLT L  LDLS N     Y +G    S+GNL S++ L+L
Sbjct:   179 HLRVLSLTSCKFTGKIPSSLGNLTYLTDLDLSWN-----YFTGELPDSMGNLKSLRVLNL 233

Query:    70 SFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQXXX 129
                N  GKI TS G L  L  + +S +    E    ++  +      L +L ++      
Sbjct:   234 HRCNFFGKIPTSLGSLSNLTDLDISKNEFTSEGPDSMSSLNRLTDFQLMLLNLSS----- 288

Query:   130 XXXXXXXXXXXFGSLFEIHFAKLSKLKYFDVSQNSLT 166
                        F ++   + + LSKL+ FD+S NS +
Sbjct:   289 -LTNVDLSSNQFKAMLPSNMSSLSKLEAFDISGNSFS 324

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2119445 AT4G13820 [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 3.3e-14, Sum P(2) = 3.3e-14
 Identities = 41/108 (37%), Positives = 57/108 (52%)

Query:    10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLS-ANISILQYLSGTFSSSVGNLTSIQTLD 68
             HL  LDL  NNF G +P  +G+L  LR L L   N      L G   SS+GNLT +  LD
Sbjct:   109 HLHNLDLGSNNFSGILPDSIGSLKYLRVLSLGDCN------LFGKIPSSLGNLTYLTNLD 162

Query:    69 LSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEI-SKILNIFSTCILD 115
             LS N+  G++  S G L KL  + L  + ++    S +LN+    ++D
Sbjct:   163 LSVNDFTGELPDSMGHLNKLTELHLGSAKLSGNFPSMLLNLSELTLID 210

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000303 "response to superoxide" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 4.1e-14, Sum P(2) = 4.1e-14
 Identities = 42/105 (40%), Positives = 61/105 (58%)

Query:    11 LVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLS 70
             L  L LS N F G IP  +GNL+ L  L+LS+N    Q+ SG   SS+GNL+++  L L 
Sbjct:   175 LTSLHLSSNQFSGQIPSSIGNLSHLTSLELSSN----QF-SGQIPSSIGNLSNLTFLSLP 229

Query:    71 FNNLEGKIATSFGRLCKLRSVFLSHSNMNQEI-SKILNIFSTCIL 114
              N+  G+I +S G L +L  ++LS++N   EI S   N+    +L
Sbjct:   230 SNDFFGQIPSSIGNLARLTYLYLSYNNFVGEIPSSFGNLNQLIVL 274

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 5.4e-14, Sum P(2) = 5.4e-14
 Identities = 40/93 (43%), Positives = 52/93 (55%)

Query:    10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDL 69
             HL FLDLS N F G  P  +G L+ L  L L +N       SG   SS+GNL+++ TLDL
Sbjct:   194 HLTFLDLSYNRFFGQFPSSIGGLSHLTTLSLFSN-----KFSGQIPSSIGNLSNLTTLDL 248

Query:    70 SFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEI 102
             S NN  G+I +  G L +L  + L  +N   EI
Sbjct:   249 SNNNFSGQIPSFIGNLSQLTFLGLFSNNFVGEI 281

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2044767 AT2G34930 "AT2G34930" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 63/196 (32%), Positives = 97/196 (49%)

Query:     1 MPWVFGLSDHLVFLDLSLNNFQGPI-------PRGLGNLTSLRYLDLSANISILQYLSGT 53
             +P V G    L FLDLS N   G I        R  GN  SL +LDLS+N      L+GT
Sbjct:   312 IPSVLGDLPQLKFLDLSANELNGQIHGFLDAFSRNKGN--SLVFLDLSSN-----KLAGT 364

Query:    54 FSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCI 113
                S+G+L ++QTLDLS N+  G + +S G +  L+ + LS++ MN  I++ L   +  +
Sbjct:   365 LPESLGSLRNLQTLDLSSNSFTGSVPSSIGNMASLKKLDLSNNAMNGTIAESLGQLAE-L 423

Query:   114 LDGLEVLEMTEWQXXXXXXXXXXXXXXFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDW 173
             +D L ++  T W               F +L  +   +L+   Y      SL   +   W
Sbjct:   424 VD-LNLMANT-W-------GGVLQKSHFVNLRSLKSIRLTTEPY-----RSLVFKLPSTW 469

Query:   174 IPPFQLKELNLESCNL 189
             IPPF+L+ + +E+C +
Sbjct:   470 IPPFRLELIQIENCRI 485

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IEP;IMP

TAIR|locus:2169404 PGIP2 "polygalacturonase inhibiting protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 3.5e-13, P = 3.5e-13
 Identities = 63/195 (32%), Positives = 91/195 (46%)

Query:    10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDL 69
             +L FL LS  N  GP+P  L  L +L Y+DLS N      LSG+  SS+ +L  ++ L+L
Sbjct:   120 NLTFLRLSWTNLTGPVPEFLSQLKNLEYIDLSFND-----LSGSIPSSLSSLRKLEYLEL 174

Query:    70 SFNNLEGKIATSFGRLC-KLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQXX 128
             S N L G I  SFG    K+ S+FLSH+ ++  I K L       +D    L   + Q  
Sbjct:   175 SRNKLTGPIPESFGTFSGKVPSLFLSHNQLSGTIPKSLGNPDFYRID----LSRNKLQGD 230

Query:   129 XXXXXXXXXXXXFGSL------FEIHFAKLSK-LKYFDVSQNSLTLNVSPDWIPP-FQLK 180
                            +      F++   KL+K L   D++ N +T ++  +W    FQL 
Sbjct:   231 ASILFGAKKTTWIVDISRNMFQFDLSKVKLAKTLNNLDMNHNGITGSIPAEWSKAYFQL- 289

Query:   181 ELNLESCNLVGNRFP 195
              LN+    L G R P
Sbjct:   290 -LNVSYNRLCG-RIP 302

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0090353 "polygalacturonase inhibitor activity" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2096349 RLP31 "receptor like protein 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 4.2e-10, P = 4.2e-10
 Identities = 62/210 (29%), Positives = 94/210 (44%)

Query:     1 MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGN 60
             +P   G    L  LDLS N   G +P  +GNL+ L  LDL  N      L G   +S+GN
Sbjct:   124 IPSSLGNLFRLTLLDLSYNYLVGQVPPSIGNLSRLTILDLWDN-----KLVGQLPASIGN 178

Query:    61 LTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVL 120
             LT ++ L  S N   G I  +F  L KL  V L +++    +   ++ F    LD   V 
Sbjct:   179 LTQLEYLIFSHNKFSGNIPVTFSNLTKLLVVNLYNNSFESMLPLDMSGFQN--LDYFNVG 236

Query:   121 EMT---EWQXXXXXXXXXXXXXXFGSLFE--IHFAKL----SKLKYFDVSQNSLTLNVSP 171
             E +                     G++F+  I F  +    ++L+Y  +SQN     + P
Sbjct:   237 ENSFSGTLPKSLFTIPSLRWANLEGNMFKGPIEFRNMYSPSTRLQYLFLSQNKFDGPI-P 295

Query:   172 DWIPPF-QLKELNLESCNLVGNRFPSWLLS 200
             D +  +  L EL+L   NL G+ FP++L +
Sbjct:   296 DTLSQYLNLIELDLSFNNLTGS-FPTFLFT 324

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00037814001 SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (996 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	203
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-15
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-12
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 73.3 bits (180), Expect = 3e-15
 Identities = 59/203 (29%), Positives = 93/203 (45%), Gaps = 53/203 (26%)

Query: 4   VFGLSDHLVFLDLSLNNFQGPIPRG----------------------LGNLTSLRYLDLS 41
           +F  S  L +L+LS NNF G IPRG                      +G+ +SL+ LDL 
Sbjct: 113 IFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLG 172

Query: 42  ANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQE 101
            N+     L G   +S+ NLTS++ L L+ N L G+I    G++  L+ ++L ++N++ E
Sbjct: 173 GNV-----LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE 227

Query: 102 ISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVS 161
           I   +                    L+SL+ ++L  N L G +       L  L+Y  + 
Sbjct: 228 IPYEIG------------------GLTSLNHLDLVYNNLTGPI-PSSLGNLKNLQYLFLY 268

Query: 162 QNSLTLNVSPDWIPP--FQLKEL 182
           QN L+       IPP  F L++L
Sbjct: 269 QNKLS-----GPIPPSIFSLQKL 286

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 64.5 bits (157), Expect = 3e-12
 Identities = 53/156 (33%), Positives = 78/156 (50%), Gaps = 24/156 (15%)

Query: 11  LVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLS 70
           L FL L+ N   G IPR LG + SL+++ L  N      LSG     +G LTS+  LDL 
Sbjct: 190 LEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN-----NLSGEIPYEIGGLTSLNHLDLV 244

Query: 71  FNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSL 130
           +NNL G I +S G L  L+ +FL  + ++  I    +IFS                L  L
Sbjct: 245 YNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP--SIFS----------------LQKL 286

Query: 131 DSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT 166
            S++LS+N+L G + E+   +L  L+   +  N+ T
Sbjct: 287 ISLDLSDNSLSGEIPEL-VIQLQNLEILHLFSNNFT 321

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 63.3 bits (154), Expect = 6e-12
 Identities = 52/144 (36%), Positives = 69/144 (47%), Gaps = 24/144 (16%)

Query: 1   MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGN 60
           +P  FG S  L  LDLS N F G +PR LG+L+ L  L LS N      LSG     + +
Sbjct: 468 LPDSFG-SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK-----LSGEIPDELSS 521

Query: 61  LTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVL 120
              + +LDLS N L G+I  SF  +  L  + LS + ++ EI K L              
Sbjct: 522 CKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLG------------- 568

Query: 121 EMTEWQLSSLDSVNLSNNTLFGSL 144
                 + SL  VN+S+N L GSL
Sbjct: 569 -----NVESLVQVNISHNHLHGSL 587

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.7 bits (142), Expect = 2e-10
 Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 5/83 (6%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDL 69
           HL  ++LS N+ +G IP  LG++TSL  LDLS N       +G+   S+G LTS++ L+L
Sbjct: 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN-----SFNGSIPESLGQLTSLRILNL 497

Query: 70  SFNNLEGKIATSFGRLCKLRSVF 92
           + N+L G++  + G     R+ F
Sbjct: 498 NGNSLSGRVPAALGGRLLHRASF 520

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 54.5 bits (131), Expect = 7e-09
 Identities = 62/204 (30%), Positives = 89/204 (43%), Gaps = 26/204 (12%)

Query: 1   MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGN 60
           +P+  G    L  LDL  NN  GPIP  LGNL +L+YL L  N      LSG    S+ +
Sbjct: 228 IPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK-----LSGPIPPSIFS 282

Query: 61  LTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVL 120
           L  + +LDLS N+L G+I     +L  L  + L  +N   +I   L       L  L+VL
Sbjct: 283 LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL-----TSLPRLQVL 337

Query: 121 EMTEWQLS-----------SLDSVNLSNNTLFGSLFE--IHFAKLSKLKYFDVSQNSLTL 167
           ++   + S           +L  ++LS N L G + E       L KL  F    NSL  
Sbjct: 338 QLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILF---SNSLEG 394

Query: 168 NVSPDWIPPFQLKELNLESCNLVG 191
            +         L+ + L+  +  G
Sbjct: 395 EIPKSLGACRSLRRVRLQDNSFSG 418

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 52.5 bits (126), Expect = 3e-08
 Identities = 54/198 (27%), Positives = 85/198 (42%), Gaps = 14/198 (7%)

Query: 11  LVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLS 70
           L  L L  N F G IP+ LG   +L  LDLS N      L+G     + +  ++  L L 
Sbjct: 334 LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN-----NLTGEIPEGLCSSGNLFKLILF 388

Query: 71  FNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISK------ILNIFSTCILDGLEVLEMTE 124
            N+LEG+I  S G    LR V L  ++ + E+        ++        +    +   +
Sbjct: 389 SNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK 448

Query: 125 WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNL 184
           W + SL  ++L+ N  FG L +       +L+  D+S+N  +  V        +L +L L
Sbjct: 449 WDMPSLQMLSLARNKFFGGLPD--SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKL 506

Query: 185 ESCNLVGNRFPSWLLSQK 202
            S N +    P  L S K
Sbjct: 507 -SENKLSGEIPDELSSCK 523

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.0 bits (122), Expect = 9e-08
 Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 8/84 (9%)

Query: 13  FLD-LSLNN--FQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDL 69
           F+D L L+N   +G IP  +  L  L+ ++LS N      + G    S+G++TS++ LDL
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGN-----SIRGNIPPSLGSITSLEVLDL 473

Query: 70  SFNNLEGKIATSFGRLCKLRSVFL 93
           S+N+  G I  S G+L  LR + L
Sbjct: 474 SYNSFNGSIPESLGQLTSLRILNL 497

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 5/59 (8%)

Query: 1   MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVG 59
           +P   G    L  LDLS N+F G IP  LG LTSLR L+L+ N      LSG   +++G
Sbjct: 458 IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN-----SLSGRVPAALG 511

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 45.2 bits (107), Expect = 8e-06
 Identities = 55/203 (27%), Positives = 84/203 (41%), Gaps = 26/203 (12%)

Query: 8   SDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTL 67
           S +L  L L  N+ +G IP+ LG   SLR + L  N       SG   S    L  +  L
Sbjct: 379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN-----SFSGELPSEFTKLPLVYFL 433

Query: 68  DLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQ- 126
           D+S NNL+G+I +    +  L+ + L+ +     +              LE L+++  Q 
Sbjct: 434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS------KRLENLDLSRNQF 487

Query: 127 ----------LSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPP 176
                     LS L  + LS N L G + +   +   KL   D+S N L+  + P     
Sbjct: 488 SGAVPRKLGSLSELMQLKLSENKLSGEIPD-ELSSCKKLVSLDLSHNQLSGQI-PASFSE 545

Query: 177 FQ-LKELNLESCNLVGNRFPSWL 198
              L +L+L S N +    P  L
Sbjct: 546 MPVLSQLDL-SQNQLSGEIPKNL 567

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.9 bits (101), Expect = 6e-05
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 18/97 (18%)

Query: 48  QYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILN 107
           Q L G   + +  L  +Q+++LS N++ G I  S G +  L  + LS+++ N  I + L 
Sbjct: 428 QGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG 487

Query: 108 IFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSL 144
                             QL+SL  +NL+ N+L G +
Sbjct: 488 ------------------QLTSLRILNLNGNSLSGRV 506

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 41/160 (25%), Positives = 69/160 (43%), Gaps = 27/160 (16%)

Query: 8   SDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLT-SIQT 66
           S  +V +DLS  N  G I   +  L  ++ ++LS N      LSG     +   + S++ 
Sbjct: 68  SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNN-----QLSGPIPDDIFTTSSSLRY 122

Query: 67  LDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQ 126
           L+LS NN  G I    G +  L ++ LS++ ++ EI   +  F                 
Sbjct: 123 LNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSF----------------- 163

Query: 127 LSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT 166
            SSL  ++L  N L G +       L+ L++  ++ N L 
Sbjct: 164 -SSLKVLDLGGNVLVGKI-PNSLTNLTSLEFLTLASNQLV 201

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	203
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.86
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.85
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.79
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.72
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.71
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.66
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.59
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.53
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.51
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.48
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.47
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.44
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.44
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.41
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.41
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.41
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.4
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.37
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.35
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.29
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.27
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.27
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.23
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.2
PLN03150	623	hypothetical protein; Provisional	99.14
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.14
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.1
PLN03150	623	hypothetical protein; Provisional	99.1
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.07
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.05
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.05
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.01
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.99
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.98
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.96
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.74
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.7
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.58
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.54
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.53
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.5
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.47
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.39
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.37
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.37
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.29
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.22
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.19
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.17
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.14
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.13
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.11
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.01
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.96
PRK15386	426	type III secretion protein GogB; Provisional	97.96
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.95
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.86
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.72
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.71
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.33
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.19
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.15
PRK15386	426	type III secretion protein GogB; Provisional	97.14
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.09
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.07
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.66
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.13
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.11
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.71
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.53
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.1
KOG4308	478	consensus LRR-containing protein [Function unknown	94.67
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.63
smart00370	26	LRR Leucine-rich repeats, outliers.	94.63
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.59
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.9
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	92.62
KOG4341	483	consensus F-box protein containing LRR [General fu	89.97
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	88.7
KOG4341	483	consensus F-box protein containing LRR [General fu	88.46
KOG4308	478	consensus LRR-containing protein [Function unknown	87.61
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	86.33
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	84.62

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.86  E-value=4.1e-21  Score=163.17  Aligned_cols=184  Identities=31%  Similarity=0.422  Sum_probs=97.0

Q ss_pred             ccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhcc
Q 037699            6 GLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRL   85 (203)
Q Consensus         6 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l   85 (203)
                      +.+++|+.|++++|.+.+..|..+.++++|++|++++|.     +.+..|..+.++++|++|++++|.+++..|..++.+
T Consensus       161 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-----l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l  235 (968)
T PLN00113        161 GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ-----LVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL  235 (968)
T ss_pred             hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCC-----CcCcCChHHcCcCCccEEECcCCccCCcCChhHhcC
Confidence            333444444444444444444444444444444444443     344444444555555555555555544455555555


Q ss_pred             CCccEEEccCCcCCcchhhhhhhccccccCCcccccc---------cc--ccCCCCCEEEccCCccccccchhhhccCCC
Q 037699           86 CKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEM---------TE--WQLSSLDSVNLSNNTLFGSLFEIHFAKLSK  154 (203)
Q Consensus        86 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~--~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~  154 (203)
                      ++|++|++++|.+.+..+..+..     +..++.+.+         +.  ..+++|+.|++++|.+.+..+. .+..+++
T Consensus       236 ~~L~~L~L~~n~l~~~~p~~l~~-----l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~  309 (968)
T PLN00113        236 TSLNHLDLVYNNLTGPIPSSLGN-----LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE-LVIQLQN  309 (968)
T ss_pred             CCCCEEECcCceeccccChhHhC-----CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh-hHcCCCC
Confidence            55555555555544433333221     112222211         11  1455666677766666555444 4566677


Q ss_pred             ccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhcc
Q 037699          155 LKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQ  201 (203)
Q Consensus       155 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~  201 (203)
                      |+.|++++|.+++..+..+..+++|+.|++++|.+ ...+|.++..+
T Consensus       310 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~p~~l~~~  355 (968)
T PLN00113        310 LEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF-SGEIPKNLGKH  355 (968)
T ss_pred             CcEEECCCCccCCcCChhHhcCCCCCEEECcCCCC-cCcCChHHhCC
Confidence            77777777777666666666677777777777776 44566666554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.85  E-value=1.1e-20  Score=160.59  Aligned_cols=189  Identities=31%  Similarity=0.468  Sum_probs=158.4

Q ss_pred             CCcccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchh
Q 037699            1 MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIAT   80 (203)
Q Consensus         1 ~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~   80 (203)
                      +|..++.+++|++|++++|.+.+..|..+..+.+|++|++++|.     +.+..|..+..+++|++|++++|.+++..|.
T Consensus       180 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-----l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  254 (968)
T PLN00113        180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN-----LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS  254 (968)
T ss_pred             CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc-----cCCcCChhHhcCCCCCEEECcCceeccccCh
Confidence            35666777899999999999998899999999999999999997     7778899999999999999999999888999


Q ss_pred             hhhccCCccEEEccCCcCCcchhhhhhhccccccCCcccccc---------cc--ccCCCCCEEEccCCccccccchhhh
Q 037699           81 SFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEM---------TE--WQLSSLDSVNLSNNTLFGSLFEIHF  149 (203)
Q Consensus        81 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~--~~~~~L~~L~l~~n~l~~~~~~~~l  149 (203)
                      .++.+++|+.|++++|.+.+..+..+..+     .+++.+++         +.  ..+++|+.|++++|.+.+..+. .+
T Consensus       255 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~-~~  328 (968)
T PLN00113        255 SLGNLKNLQYLFLYQNKLSGPIPPSIFSL-----QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV-AL  328 (968)
T ss_pred             hHhCCCCCCEEECcCCeeeccCchhHhhc-----cCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh-hH
Confidence            99999999999999998877666544332     22333222         22  2678999999999999877666 68


Q ss_pred             ccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhcc
Q 037699          150 AKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQ  201 (203)
Q Consensus       150 ~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~  201 (203)
                      ..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+ ...+|.++..+
T Consensus       329 ~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l-~~~~p~~~~~~  379 (968)
T PLN00113        329 TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL-TGEIPEGLCSS  379 (968)
T ss_pred             hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCee-EeeCChhHhCc
Confidence            8999999999999999988888899999999999999999 55678777654

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.79  E-value=5.1e-22  Score=131.16  Aligned_cols=169  Identities=24%  Similarity=0.391  Sum_probs=140.9

Q ss_pred             CCcccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchh
Q 037699            1 MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIAT   80 (203)
Q Consensus         1 ~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~   80 (203)
                      +|..|... +++.|-+++|.++ ..|+.++.+.+|+.|++.+|+      ...+|..++++++|++|+++.|.+. .+|.
T Consensus        26 ~~gLf~~s-~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnq------ie~lp~~issl~klr~lnvgmnrl~-~lpr   96 (264)
T KOG0617|consen   26 LPGLFNMS-NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQ------IEELPTSISSLPKLRILNVGMNRLN-ILPR   96 (264)
T ss_pred             cccccchh-hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccch------hhhcChhhhhchhhhheecchhhhh-cCcc
Confidence            35556665 8999999999999 677789999999999999994      5667889999999999999999987 8999


Q ss_pred             hhhccCCccEEEccCCcCCcch-hhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEE
Q 037699           81 SFGRLCKLRSVFLSHSNMNQEI-SKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFD  159 (203)
Q Consensus        81 ~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~  159 (203)
                      .|+.++.|+.||+++|.+.... |.-+-                  .+..|+.|.+++|++. ..|. .++.+++|++|.
T Consensus        97 gfgs~p~levldltynnl~e~~lpgnff------------------~m~tlralyl~dndfe-~lp~-dvg~lt~lqil~  156 (264)
T KOG0617|consen   97 GFGSFPALEVLDLTYNNLNENSLPGNFF------------------YMTTLRALYLGDNDFE-ILPP-DVGKLTNLQILS  156 (264)
T ss_pred             ccCCCchhhhhhccccccccccCCcchh------------------HHHHHHHHHhcCCCcc-cCCh-hhhhhcceeEEe
Confidence            9999999999999999887532 22111                  3567888999999983 6666 688999999999


Q ss_pred             ccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhcc
Q 037699          160 VSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQ  201 (203)
Q Consensus       160 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~  201 (203)
                      +++|.+- ..|+.++.+.+|++|++++|++  .-+|.++..+
T Consensus       157 lrdndll-~lpkeig~lt~lrelhiqgnrl--~vlppel~~l  195 (264)
T KOG0617|consen  157 LRDNDLL-SLPKEIGDLTRLRELHIQGNRL--TVLPPELANL  195 (264)
T ss_pred             eccCchh-hCcHHHHHHHHHHHHhccccee--eecChhhhhh
Confidence            9999877 5678888999999999999998  6678877654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.72  E-value=6.5e-18  Score=130.34  Aligned_cols=188  Identities=27%  Similarity=0.320  Sum_probs=122.1

Q ss_pred             CCcccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchh
Q 037699            1 MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIAT   80 (203)
Q Consensus         1 ~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~   80 (203)
                      ||.+.....+++.|++.+|.|..+..+.+..++.|+.+|++.|.     +....-..+..-.++++|++++|.|+..-..
T Consensus       117 IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~-----is~i~~~sfp~~~ni~~L~La~N~It~l~~~  191 (873)
T KOG4194|consen  117 IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL-----ISEIPKPSFPAKVNIKKLNLASNRITTLETG  191 (873)
T ss_pred             cccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch-----hhcccCCCCCCCCCceEEeeccccccccccc
Confidence            45555556567777777777766666666666667777777663     3333334455555677777777777655455


Q ss_pred             hhhccCCccEEEccCCcCCcchhhhhhhccccc-------------------cCCccccccc----------c-ccCCCC
Q 037699           81 SFGRLCKLRSVFLSHSNMNQEISKILNIFSTCI-------------------LDGLEVLEMT----------E-WQLSSL  130 (203)
Q Consensus        81 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~-------------------~~~l~~l~~~----------~-~~~~~L  130 (203)
                      .|..+.+|..+.+++|.++...+..++.+..+.                   +++++.+.+.          + +.+.++
T Consensus       192 ~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~km  271 (873)
T KOG4194|consen  192 HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKM  271 (873)
T ss_pred             cccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeeccc
Confidence            566666676777777766665555444211111                   2222222211          1 156678


Q ss_pred             CEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCch
Q 037699          131 DSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPS  196 (203)
Q Consensus       131 ~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~  196 (203)
                      +.|++..|++. ..-..++-+++.|+.|++++|.|...-++.|..+.+|++|+|++|+|  .+++.
T Consensus       272 e~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i--~~l~~  334 (873)
T KOG4194|consen  272 EHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRI--TRLDE  334 (873)
T ss_pred             ceeecccchhh-hhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccc--ccCCh
Confidence            88888888885 44444677889999999999999887788899899999999999998  44544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.71  E-value=2.5e-18  Score=132.62  Aligned_cols=184  Identities=23%  Similarity=0.246  Sum_probs=100.6

Q ss_pred             ccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhcc
Q 037699            6 GLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRL   85 (203)
Q Consensus         6 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l   85 (203)
                      ..++.|+.+.+..|.+..--.+.|..+.++++|+++.|+     +...-..++-+++.|++|++++|.|....+..+...
T Consensus       242 qgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~-----l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft  316 (873)
T KOG4194|consen  242 QGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR-----LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT  316 (873)
T ss_pred             cCchhhhhhhhhhcCcccccCcceeeecccceeecccch-----hhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence            344456666666666554444555666666666666665     444444555566666666666666665555555556


Q ss_pred             CCccEEEccCCcCCcchhhhhhhccccccCCccccccc----------cc-cCCCCCEEEccCCcccccc--chhhhccC
Q 037699           86 CKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMT----------EW-QLSSLDSVNLSNNTLFGSL--FEIHFAKL  152 (203)
Q Consensus        86 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~----------~~-~~~~L~~L~l~~n~l~~~~--~~~~l~~~  152 (203)
                      ++|++|++++|.+....+..+..+..     ++.+.+.          +. .+.+|+.|+++.|.+...+  ....+.++
T Consensus       317 qkL~~LdLs~N~i~~l~~~sf~~L~~-----Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl  391 (873)
T KOG4194|consen  317 QKLKELDLSSNRITRLDEGSFRVLSQ-----LEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGL  391 (873)
T ss_pred             ccceeEeccccccccCChhHHHHHHH-----hhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccc
Confidence            66666666666665555544432111     1111111          10 4556666666666654221  11245566


Q ss_pred             CCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhc
Q 037699          153 SKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLS  200 (203)
Q Consensus       153 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~  200 (203)
                      ++|+.|++.+|++.....+.+..++.|+.|+|.+|.| -+.-|..+..
T Consensus       392 ~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Nai-aSIq~nAFe~  438 (873)
T KOG4194|consen  392 PSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAI-ASIQPNAFEP  438 (873)
T ss_pred             hhhhheeecCceeeecchhhhccCcccceecCCCCcc-eeeccccccc
Confidence            6666666666666644445666666666666666666 3333444433

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.66  E-value=8.1e-18  Score=131.22  Aligned_cols=93  Identities=32%  Similarity=0.350  Sum_probs=72.7

Q ss_pred             CCcccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchh
Q 037699            1 MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIAT   80 (203)
Q Consensus         1 ~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~   80 (203)
                      ||.-+-.++.|+.+|+++|.+. +.|..+...+++-.|++++|+     +..+....+-++..|-.|+++.|.+. .+|.
T Consensus        95 iP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~-----IetIPn~lfinLtDLLfLDLS~NrLe-~LPP  167 (1255)
T KOG0444|consen   95 IPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNN-----IETIPNSLFINLTDLLFLDLSNNRLE-MLPP  167 (1255)
T ss_pred             CCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCc-----cccCCchHHHhhHhHhhhccccchhh-hcCH
Confidence            3443334458899999999988 788888888888899999985     55554445667788888899999887 7788


Q ss_pred             hhhccCCccEEEccCCcCCc
Q 037699           81 SFGRLCKLRSVFLSHSNMNQ  100 (203)
Q Consensus        81 ~~~~l~~L~~L~l~~n~~~~  100 (203)
                      .+..+..|++|.+++|++.-
T Consensus       168 Q~RRL~~LqtL~Ls~NPL~h  187 (1255)
T KOG0444|consen  168 QIRRLSMLQTLKLSNNPLNH  187 (1255)
T ss_pred             HHHHHhhhhhhhcCCChhhH
Confidence            88888899999999887653

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.59  E-value=2.8e-17  Score=108.85  Aligned_cols=146  Identities=25%  Similarity=0.444  Sum_probs=123.4

Q ss_pred             CcccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccC-ccchh
Q 037699            2 PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLE-GKIAT   80 (203)
Q Consensus         2 p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~   80 (203)
                      |.-+...++|+.|++++|.++ ++|..++.+++|++|++..|      .....|..|++++.|+.||+.+|.+. ..+|.
T Consensus        49 ppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmn------rl~~lprgfgs~p~levldltynnl~e~~lpg  121 (264)
T KOG0617|consen   49 PPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMN------RLNILPRGFGSFPALEVLDLTYNNLNENSLPG  121 (264)
T ss_pred             CCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchh------hhhcCccccCCCchhhhhhccccccccccCCc
Confidence            343444569999999999998 89999999999999999998      56778999999999999999999987 57888


Q ss_pred             hhhccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEc
Q 037699           81 SFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDV  160 (203)
Q Consensus        81 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l  160 (203)
                      .|..|..|+.|.+++|.+.-..+...                   ++++|+.|.+.+|++. +.|. .++.+..|++|++
T Consensus       122 nff~m~tlralyl~dndfe~lp~dvg-------------------~lt~lqil~lrdndll-~lpk-eig~lt~lrelhi  180 (264)
T KOG0617|consen  122 NFFYMTTLRALYLGDNDFEILPPDVG-------------------KLTNLQILSLRDNDLL-SLPK-EIGDLTRLRELHI  180 (264)
T ss_pred             chhHHHHHHHHHhcCCCcccCChhhh-------------------hhcceeEEeeccCchh-hCcH-HHHHHHHHHHHhc
Confidence            99999999999999998764444332                   6889999999999995 6777 7899999999999


Q ss_pred             cCCccccccCCCCCCC
Q 037699          161 SQNSLTLNVSPDWIPP  176 (203)
Q Consensus       161 ~~n~~~~~~~~~l~~~  176 (203)
                      ++|+++ ..|+.+..+
T Consensus       181 qgnrl~-vlppel~~l  195 (264)
T KOG0617|consen  181 QGNRLT-VLPPELANL  195 (264)
T ss_pred             ccceee-ecChhhhhh
Confidence            999998 456665543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.53  E-value=2.4e-16  Score=123.13  Aligned_cols=187  Identities=24%  Similarity=0.242  Sum_probs=95.8

Q ss_pred             ccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhcc
Q 037699            6 GLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRL   85 (203)
Q Consensus         6 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l   85 (203)
                      ..-+++-+|++++|.|..+...-+-++..|-.|++++|      -.+.+|+....+..|++|.+++|++..---..+..|
T Consensus       123 E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N------rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsm  196 (1255)
T KOG0444|consen  123 EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN------RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSM  196 (1255)
T ss_pred             hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc------hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccc
Confidence            33456677888888887444455567777777888887      344556666667777777777776542111112233


Q ss_pred             CCccEEEccCCcCCc-chhhhhh---hccccccCCccccccccc--cCCCCCEEEccCCccccccchhhhccCCCccEEE
Q 037699           86 CKLRSVFLSHSNMNQ-EISKILN---IFSTCILDGLEVLEMTEW--QLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFD  159 (203)
Q Consensus        86 ~~L~~L~l~~n~~~~-~~~~~~~---~~~~~~~~~l~~l~~~~~--~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~  159 (203)
                      .+|+.|.+++.+-+. ..|..+.   .+....+.....-.+|.+  ++++|+.|++++|.++. .-. ..+.+.++++|+
T Consensus       197 tsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~ite-L~~-~~~~W~~lEtLN  274 (1255)
T KOG0444|consen  197 TSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITE-LNM-TEGEWENLETLN  274 (1255)
T ss_pred             hhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceee-eec-cHHHHhhhhhhc
Confidence            444445554432211 1111111   111100110000011111  45566666666666642 222 344555666666


Q ss_pred             ccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhcc
Q 037699          160 VSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQ  201 (203)
Q Consensus       160 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~  201 (203)
                      ++.|+++ ..|..+..+++|+.|.+.+|.+.=+-+|+.|.++
T Consensus       275 lSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL  315 (1255)
T KOG0444|consen  275 LSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL  315 (1255)
T ss_pred             cccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhh
Confidence            6666665 3455555566666666666655445555555543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.51  E-value=1.2e-16  Score=118.36  Aligned_cols=180  Identities=22%  Similarity=0.280  Sum_probs=96.6

Q ss_pred             cccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCcc
Q 037699           10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLR   89 (203)
Q Consensus        10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~   89 (203)
                      .++.+++++|.+. ++++.++.+..++.++..+|+      ....|+.+..+.++..+++.+|.+. .+|...-.|..|+
T Consensus       115 ~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~------i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~  186 (565)
T KOG0472|consen  115 SLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQ------ISSLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLK  186 (565)
T ss_pred             hhhhhhcccccee-ecCchHHHHhhhhhhhccccc------cccCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHH
Confidence            4444444444444 344444444445555444442      2223444444444555555555554 2333333355555


Q ss_pred             EEEccCCcCCcchhhhhh--hccccccCCccccccccc-cCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccc
Q 037699           90 SVFLSHSNMNQEISKILN--IFSTCILDGLEVLEMTEW-QLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT  166 (203)
Q Consensus        90 ~L~l~~n~~~~~~~~~~~--~~~~~~~~~l~~l~~~~~-~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~  166 (203)
                      +++...|.+...+++...  .+....+.......+|.+ .+..|+++.++.|.+. ..++....++.++.+||+++|+++
T Consensus       187 ~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk  265 (565)
T KOG0472|consen  187 HLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK  265 (565)
T ss_pred             hcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc
Confidence            555555554443333221  111111222222223322 4556667777777663 556656667788888888888887


Q ss_pred             cccCCCCCCCCCccEEEcCCCCCCCCCCchhhhcc
Q 037699          167 LNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQ  201 (203)
Q Consensus       167 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~  201 (203)
                       +.|+.+.-+.+|.+||+++|.|  +.+|..++.|
T Consensus       266 -e~Pde~clLrsL~rLDlSNN~i--s~Lp~sLgnl  297 (565)
T KOG0472|consen  266 -EVPDEICLLRSLERLDLSNNDI--SSLPYSLGNL  297 (565)
T ss_pred             -cCchHHHHhhhhhhhcccCCcc--ccCCcccccc
Confidence             5677777777888888888888  5677777665

>PLN03210 Resistant to P

Probab=99.48  E-value=1e-12  Score=113.52  Aligned_cols=87  Identities=25%  Similarity=0.284  Sum_probs=51.4

Q ss_pred             CcccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhh
Q 037699            2 PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATS   81 (203)
Q Consensus         2 p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~   81 (203)
                      |..+.. .+|+.|++.++.+. .++..+..+++|+.++++++.     ....+|. ++.+++|++|++++|.....+|..
T Consensus       605 P~~f~~-~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~-----~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s  676 (1153)
T PLN03210        605 PSNFRP-ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSK-----NLKEIPD-LSMATNLETLKLSDCSSLVELPSS  676 (1153)
T ss_pred             CCcCCc-cCCcEEECcCcccc-ccccccccCCCCCEEECCCCC-----CcCcCCc-cccCCcccEEEecCCCCccccchh
Confidence            444433 37777777777665 456666666777777776654     3334443 455666666666665544455656


Q ss_pred             hhccCCccEEEccCC
Q 037699           82 FGRLCKLRSVFLSHS   96 (203)
Q Consensus        82 ~~~l~~L~~L~l~~n   96 (203)
                      +..+++|+.|++.+|
T Consensus       677 i~~L~~L~~L~L~~c  691 (1153)
T PLN03210        677 IQYLNKLEDLDMSRC  691 (1153)
T ss_pred             hhccCCCCEEeCCCC
Confidence            666666666666554

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.47  E-value=2.4e-15  Score=111.27  Aligned_cols=188  Identities=26%  Similarity=0.216  Sum_probs=109.7

Q ss_pred             CCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccc-cccCcc---------
Q 037699            8 SDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSF-NNLEGK---------   77 (203)
Q Consensus         8 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~---------   77 (203)
                      ....+.+++..|.|+...+.+|+.+++|+.|++++|.     +..+.|..|.+++.+..|.+.+ |+|+..         
T Consensus        66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~-----Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~  140 (498)
T KOG4237|consen   66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN-----ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS  140 (498)
T ss_pred             CCcceEEEeccCCcccCChhhccchhhhceecccccc-----hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH
Confidence            3455667777787776666777778888888888776     7777777777777776666655 666622         


Q ss_pred             ---------------chhhhhccCCccEEEccCCcCCcchhhhhh---------------------------------hc
Q 037699           78 ---------------IATSFGRLCKLRSVFLSHSNMNQEISKILN---------------------------------IF  109 (203)
Q Consensus        78 ---------------~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~---------------------------------~~  109 (203)
                                     ....+..++++..|.+.+|.+.......+.                                 .+
T Consensus       141 slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iet  220 (498)
T KOG4237|consen  141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIET  220 (498)
T ss_pred             HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhc
Confidence                           123445555555555555544211110000                                 00


Q ss_pred             cccc--------------------cCCcccc------------cccc---ccCCCCCEEEccCCccccccch--------
Q 037699          110 STCI--------------------LDGLEVL------------EMTE---WQLSSLDSVNLSNNTLFGSLFE--------  146 (203)
Q Consensus       110 ~~~~--------------------~~~l~~l------------~~~~---~~~~~L~~L~l~~n~l~~~~~~--------  146 (203)
                      .+..                    ...++.+            ..|.   ..+++|+.+++++|.+++....        
T Consensus       221 sgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l  300 (498)
T KOG4237|consen  221 SGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAEL  300 (498)
T ss_pred             ccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhh
Confidence            0000                    0000000            0111   1678899999999988632222        


Q ss_pred             ---------------hhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhc
Q 037699          147 ---------------IHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLS  200 (203)
Q Consensus       147 ---------------~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~  200 (203)
                                     ..|.++..|++|+|.+|+|+...+..|..+.+|.+|+|-.|.+-.+.--.|+.+
T Consensus       301 ~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~  369 (498)
T KOG4237|consen  301 QELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGE  369 (498)
T ss_pred             hhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHH
Confidence                           124455667777777777776666666666777777777777666666666554

>PLN03210 Resistant to P

Probab=99.44  E-value=2.4e-12  Score=111.23  Aligned_cols=184  Identities=23%  Similarity=0.169  Sum_probs=117.7

Q ss_pred             cccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhh
Q 037699            3 WVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSF   82 (203)
Q Consensus         3 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~   82 (203)
                      ..+..+++|+.++++++.....+| .+..+++|+.|++++|.     ....+|..+..+++|+.|++++|.....+|..+
T Consensus       628 ~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~-----~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i  701 (1153)
T PLN03210        628 DGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCS-----SLVELPSSIQYLNKLEDLDMSRCENLEILPTGI  701 (1153)
T ss_pred             cccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCC-----CccccchhhhccCCCCEEeCCCCCCcCccCCcC
Confidence            334556788889998876444555 46778889999998886     666778888888889999998876555666654


Q ss_pred             hccCCccEEEccCCcCCcchhhhhhhccccc--------------cCCcccccccc------------------ccCCCC
Q 037699           83 GRLCKLRSVFLSHSNMNQEISKILNIFSTCI--------------LDGLEVLEMTE------------------WQLSSL  130 (203)
Q Consensus        83 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~--------------~~~l~~l~~~~------------------~~~~~L  130 (203)
                       .+.+|+.|++++|......|.....+..+.              +.++..+.+..                  ...++|
T Consensus       702 -~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL  780 (1153)
T PLN03210        702 -NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL  780 (1153)
T ss_pred             -CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccc
Confidence             678888888888754433332221111111              11122111111                  013467


Q ss_pred             CEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCch
Q 037699          131 DSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPS  196 (203)
Q Consensus       131 ~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~  196 (203)
                      +.|++++|.....+|. .++.+++|+.|++++|...+.+|... .+++|+.|++++|.. -..+|.
T Consensus       781 ~~L~Ls~n~~l~~lP~-si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~-L~~~p~  843 (1153)
T PLN03210        781 TRLFLSDIPSLVELPS-SIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSR-LRTFPD  843 (1153)
T ss_pred             hheeCCCCCCccccCh-hhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCc-cccccc
Confidence            7788877765555665 57788888888888875444555443 577888888888753 233443

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.44  E-value=8.2e-14  Score=104.79  Aligned_cols=180  Identities=23%  Similarity=0.206  Sum_probs=112.4

Q ss_pred             cccCCcccEEecCCCccCCCCCccccCCCC---ccEEeCCCCcccccccc----cccccccCCC-CCCCEEEccccccCc
Q 037699            5 FGLSDHLVFLDLSLNNFQGPIPRGLGNLTS---LRYLDLSANISILQYLS----GTFSSSVGNL-TSIQTLDLSFNNLEG   76 (203)
Q Consensus         5 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~---L~~L~l~~~~~~~~~~~----~~~~~~l~~~-~~L~~L~l~~~~~~~   76 (203)
                      +...++|+.|++++|.+....+..+..+..   |++|++++|.     +.    ..+...+..+ ++|+.+++++|.+++
T Consensus        77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~-----~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  151 (319)
T cd00116          77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG-----LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEG  151 (319)
T ss_pred             HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc-----cchHHHHHHHHHHHhCCCCceEEEcCCCcCCc
Confidence            344568889999998887555555555554   8899998885     33    2233345556 788888888888873


Q ss_pred             ----cchhhhhccCCccEEEccCCcCCcchhhh-hhhccccccCCcccccccc---------------ccCCCCCEEEcc
Q 037699           77 ----KIATSFGRLCKLRSVFLSHSNMNQEISKI-LNIFSTCILDGLEVLEMTE---------------WQLSSLDSVNLS  136 (203)
Q Consensus        77 ----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~~~~~~l~~l~~~~---------------~~~~~L~~L~l~  136 (203)
                          .++..+..+.+|++|++++|.+.+..... ...+..  ...++.+.+..               ..+++|+.|+++
T Consensus       152 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~--~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls  229 (319)
T cd00116         152 ASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKA--NCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLG  229 (319)
T ss_pred             hHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHh--CCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecC
Confidence                23345566678888888888877432221 111110  12233222211               146779999999


Q ss_pred             CCccccccchhhhcc----CCCccEEEccCCcccc----ccCCCCCCCCCccEEEcCCCCCCC
Q 037699          137 NNTLFGSLFEIHFAK----LSKLKYFDVSQNSLTL----NVSPDWIPPFQLKELNLESCNLVG  191 (203)
Q Consensus       137 ~n~l~~~~~~~~l~~----~~~L~~L~l~~n~~~~----~~~~~l~~~~~L~~L~l~~n~l~~  191 (203)
                      +|.+.+.........    .+.|+.|++++|.++.    .+...+...++|+++++++|.+++
T Consensus       230 ~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~  292 (319)
T cd00116         230 DNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE  292 (319)
T ss_pred             CCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence            988864322212222    3688999999998862    223344556788999999998843

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.41  E-value=2.7e-15  Score=111.34  Aligned_cols=175  Identities=23%  Similarity=0.290  Sum_probs=122.2

Q ss_pred             CcccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhh
Q 037699            2 PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATS   81 (203)
Q Consensus         2 p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~   81 (203)
                      |+.++.+..++.++-.+|++. ..|+.+..+.++..+++.+|.     .....|..+ .|+.|++++...|.++ .+|+.
T Consensus       130 ~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~-----l~~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~  201 (565)
T KOG0472|consen  130 PDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNK-----LKALPENHI-AMKRLKHLDCNSNLLE-TLPPE  201 (565)
T ss_pred             CchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccc-----hhhCCHHHH-HHHHHHhcccchhhhh-cCChh
Confidence            333444447777888888877 677777778888888888875     444444433 3777888888777776 77777


Q ss_pred             hhccCCccEEEccCCcCCcchhhhh--hhccccccCCccccccccc---cCCCCCEEEccCCccccccchhhhccCCCcc
Q 037699           82 FGRLCKLRSVFLSHSNMNQEISKIL--NIFSTCILDGLEVLEMTEW---QLSSLDSVNLSNNTLFGSLFEIHFAKLSKLK  156 (203)
Q Consensus        82 ~~~l~~L~~L~l~~n~~~~~~~~~~--~~~~~~~~~~l~~l~~~~~---~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~  156 (203)
                      ++.|.+|..|++.+|++... |++-  +.+..+.......-.+|+.   .+.++..||+.+|.+. ..|. .+..+++|+
T Consensus       202 lg~l~~L~~LyL~~Nki~~l-Pef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pd-e~clLrsL~  278 (565)
T KOG0472|consen  202 LGGLESLELLYLRRNKIRFL-PEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPD-EICLLRSLE  278 (565)
T ss_pred             hcchhhhHHHHhhhcccccC-CCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCch-HHHHhhhhh
Confidence            88888888788888777532 2221  2222222221111122222   6789999999999995 6666 567889999


Q ss_pred             EEEccCCccccccCCCCCCCCCccEEEcCCCCC
Q 037699          157 YFDVSQNSLTLNVSPDWIPPFQLKELNLESCNL  189 (203)
Q Consensus       157 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l  189 (203)
                      .||+++|.+++ .|..++.+ +|+.|.+.||++
T Consensus       279 rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPl  309 (565)
T KOG0472|consen  279 RLDLSNNDISS-LPYSLGNL-HLKFLALEGNPL  309 (565)
T ss_pred             hhcccCCcccc-CCcccccc-eeeehhhcCCch
Confidence            99999999994 66778888 899999999997

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.41  E-value=1.9e-14  Score=106.60  Aligned_cols=85  Identities=21%  Similarity=0.235  Sum_probs=64.9

Q ss_pred             ecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCccEEEcc
Q 037699           15 DLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLS   94 (203)
Q Consensus        15 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~   94 (203)
                      +.++-.++ ++|..+.  +.-.++.+..|.     +....+..|+.+++|+.|+++.|.|+...|.+|..+.++..+-+.
T Consensus        52 dCr~~GL~-eVP~~LP--~~tveirLdqN~-----I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvly  123 (498)
T KOG4237|consen   52 DCRGKGLT-EVPANLP--PETVEIRLDQNQ-----ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLY  123 (498)
T ss_pred             EccCCCcc-cCcccCC--CcceEEEeccCC-----cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhh
Confidence            44444444 3443321  345688999997     888889999999999999999999998899999999998777666


Q ss_pred             C-CcCCcchhhhhh
Q 037699           95 H-SNMNQEISKILN  107 (203)
Q Consensus        95 ~-n~~~~~~~~~~~  107 (203)
                      + |++.......+.
T Consensus       124 g~NkI~~l~k~~F~  137 (498)
T KOG4237|consen  124 GNNKITDLPKGAFG  137 (498)
T ss_pred             cCCchhhhhhhHhh
Confidence            5 888776555554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.41  E-value=3.9e-15  Score=120.21  Aligned_cols=182  Identities=26%  Similarity=0.352  Sum_probs=119.3

Q ss_pred             CcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCc
Q 037699            9 DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL   88 (203)
Q Consensus         9 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L   88 (203)
                      .+++.++++++.+. .+|+-++.+.+|+.+.+.+|.     + ..+|..+....+|+.+...+|.+. .+|........|
T Consensus       241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~-----l-~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL  312 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNR-----L-VALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSL  312 (1081)
T ss_pred             ccceeeecchhhhh-cchHHHHhcccceEecccchh-----H-HhhHHHHhhhhhHHHHHhhhhhhh-hCCCccccccee
Confidence            47777888888777 455777778888888888874     3 556666677777777777777776 666777778889


Q ss_pred             cEEEccCCcCCcchhhhhhhccccc------cCCccccc-cccccCCCCCEEEccCCccccccchhhhccCCCccEEEcc
Q 037699           89 RSVFLSHSNMNQEISKILNIFSTCI------LDGLEVLE-MTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVS  161 (203)
Q Consensus        89 ~~L~l~~n~~~~~~~~~~~~~~~~~------~~~l~~l~-~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~  161 (203)
                      ++|++..|.+...++..+.......      ...+..+. .+....+.|+.|.+.+|.+++...+ .+.+.++|++|+|+
T Consensus       313 ~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p-~l~~~~hLKVLhLs  391 (1081)
T KOG0618|consen  313 RTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP-VLVNFKHLKVLHLS  391 (1081)
T ss_pred             eeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh-hhccccceeeeeec
Confidence            9999999988776665443211100      00111111 1112445677777777777665444 56677777777777


Q ss_pred             CCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhcc
Q 037699          162 QNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQ  201 (203)
Q Consensus       162 ~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~  201 (203)
                      +|++.......+.++..|++|+|+||.+  ..+|+.+..+
T Consensus       392 yNrL~~fpas~~~kle~LeeL~LSGNkL--~~Lp~tva~~  429 (1081)
T KOG0618|consen  392 YNRLNSFPASKLRKLEELEELNLSGNKL--TTLPDTVANL  429 (1081)
T ss_pred             ccccccCCHHHHhchHHhHHHhcccchh--hhhhHHHHhh
Confidence            7777654445566677777777777777  6666666554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.40  E-value=3.2e-12  Score=104.94  Aligned_cols=117  Identities=19%  Similarity=0.255  Sum_probs=53.8

Q ss_pred             CCCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCcccc
Q 037699           63 SIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFG  142 (203)
Q Consensus        63 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~  142 (203)
                      +|+.|++++|.++ .+|..+.  .+|+.|++++|.+..........+..+.+.+.....++....++|+.|++++|.++ 
T Consensus       263 ~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt-  338 (754)
T PRK15370        263 ALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALT-  338 (754)
T ss_pred             CCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccc-
Confidence            5666666666665 4454332  36777777777665432211111111111111111122222245566666666553 


Q ss_pred             ccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCC
Q 037699          143 SLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNL  189 (203)
Q Consensus       143 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l  189 (203)
                      .++. .+  .++|+.|++++|.++ .+|..+  .++|+.|+|++|.+
T Consensus       339 ~LP~-~l--~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~L  379 (754)
T PRK15370        339 SLPA-SL--PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNAL  379 (754)
T ss_pred             cCCh-hh--cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcC
Confidence            2332 11  245566666666555 233222  13455555555555

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.37  E-value=2.1e-13  Score=102.61  Aligned_cols=174  Identities=25%  Similarity=0.291  Sum_probs=84.8

Q ss_pred             CcccEEecCCCccCC------CCCccccCCCCccEEeCCCCcccccccccccccccCCC---CCCCEEEccccccCc---
Q 037699            9 DHLVFLDLSLNNFQG------PIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNL---TSIQTLDLSFNNLEG---   76 (203)
Q Consensus         9 ~~L~~L~l~~~~~~~------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~~~---   76 (203)
                      +.++.++++++.+..      ..+..+..+++|++|++++|.     +....+..+..+   ++|++|++++|.+++   
T Consensus        51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-----~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~  125 (319)
T cd00116          51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA-----LGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL  125 (319)
T ss_pred             CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCC-----CChhHHHHHHHHhccCcccEEEeeCCccchHHH
Confidence            346666666665541      122344556677777777664     332333333333   337777777776652   


Q ss_pred             -cchhhhhcc-CCccEEEccCCcCCcchhhhh-hhccccccCCccccccccc---------------cCCCCCEEEccCC
Q 037699           77 -KIATSFGRL-CKLRSVFLSHSNMNQEISKIL-NIFSTCILDGLEVLEMTEW---------------QLSSLDSVNLSNN  138 (203)
Q Consensus        77 -~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~-~~~~~~~~~~l~~l~~~~~---------------~~~~L~~L~l~~n  138 (203)
                       .+...+..+ ++|+.+++++|.+........ ..+..  +..++.+.+...               ..++|+.|++++|
T Consensus       126 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n  203 (319)
T cd00116         126 RLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRA--NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN  203 (319)
T ss_pred             HHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHh--CCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC
Confidence             222334455 667777777777663222111 11110  112222221111               2246666777666


Q ss_pred             ccccccch---hhhccCCCccEEEccCCccccccCCCCC-----CCCCccEEEcCCCCC
Q 037699          139 TLFGSLFE---IHFAKLSKLKYFDVSQNSLTLNVSPDWI-----PPFQLKELNLESCNL  189 (203)
Q Consensus       139 ~l~~~~~~---~~l~~~~~L~~L~l~~n~~~~~~~~~l~-----~~~~L~~L~l~~n~l  189 (203)
                      .+.+....   ..+..+++|+.|++++|.++......+.     ..+.|+.|++++|.+
T Consensus       204 ~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i  262 (319)
T cd00116         204 GLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI  262 (319)
T ss_pred             ccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence            65422111   1334556677777777666532111111     234667777777766

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.35  E-value=1.5e-13  Score=111.19  Aligned_cols=160  Identities=28%  Similarity=0.372  Sum_probs=96.6

Q ss_pred             CCcccccCCcccEEecCCCccCCCCCccc-c-------------------------CCCCccEEeCCCCccccccccccc
Q 037699            1 MPWVFGLSDHLVFLDLSLNNFQGPIPRGL-G-------------------------NLTSLRYLDLSANISILQYLSGTF   54 (203)
Q Consensus         1 ~p~~~~~~~~L~~L~l~~~~~~~~~~~~~-~-------------------------~l~~L~~L~l~~~~~~~~~~~~~~   54 (203)
                      +|......+.|++|++..|.+. .+|..+ .                         .++.|+.|++.+|.     +.+..
T Consensus       302 ip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~-----Ltd~c  375 (1081)
T KOG0618|consen  302 IPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH-----LTDSC  375 (1081)
T ss_pred             CCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCc-----ccccc
Confidence            4556666668888888887776 333211 1                         12335556666665     55555


Q ss_pred             ccccCCCCCCCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEE
Q 037699           55 SSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVN  134 (203)
Q Consensus        55 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~  134 (203)
                      -+.+..+.+|+.|++++|.+..--...+.++..|++|++++|++.... ...+                  .++.|+.|.
T Consensus       376 ~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva------------------~~~~L~tL~  436 (1081)
T KOG0618|consen  376 FPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVA------------------NLGRLHTLR  436 (1081)
T ss_pred             hhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHH------------------hhhhhHHHh
Confidence            556666667777777777666222334556666777777777665443 2222                  455666666


Q ss_pred             ccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCC
Q 037699          135 LSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCN  188 (203)
Q Consensus       135 l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~  188 (203)
                      ...|.+. ..|  .+..++.|+.+|++.|.++....+.-...++|++|++++|.
T Consensus       437 ahsN~l~-~fP--e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  437 AHSNQLL-SFP--ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             hcCCcee-ech--hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            6666663 445  35677777777777777775444444444677777777775

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.29  E-value=1.7e-11  Score=100.74  Aligned_cols=167  Identities=20%  Similarity=0.305  Sum_probs=93.9

Q ss_pred             CcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCc
Q 037699            9 DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL   88 (203)
Q Consensus         9 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L   88 (203)
                      ++++.|++++|.++ .+|..+.  .+|+.|++++|.     +. .+|..+.  .+|+.|++++|.+. .+|..+.  .+|
T Consensus       199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~-----Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L  264 (754)
T PRK15370        199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQ-----LT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SAL  264 (754)
T ss_pred             cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCc-----cc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCC
Confidence            36677777777776 4554432  467777777774     33 3344332  35777777777776 5555443  467


Q ss_pred             cEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccc
Q 037699           89 RSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLN  168 (203)
Q Consensus        89 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~  168 (203)
                      +.|++++|.+..........+..+.+.+...-.++..-.++|+.|++++|.+. .++..   -.++|+.|++++|.++. 
T Consensus       265 ~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt-~LP~~---l~~sL~~L~Ls~N~Lt~-  339 (754)
T PRK15370        265 QSLDLFHNKISCLPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLT-ALPET---LPPGLKTLEAGENALTS-  339 (754)
T ss_pred             CEEECcCCccCccccccCCCCcEEECCCCccccCcccchhhHHHHHhcCCccc-cCCcc---ccccceeccccCCcccc-
Confidence            77777777766432211111111111111111111111234666666666664 33321   23578888888888874 


Q ss_pred             cCCCCCCCCCccEEEcCCCCCCCCCCchhh
Q 037699          169 VSPDWIPPFQLKELNLESCNLVGNRFPSWL  198 (203)
Q Consensus       169 ~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~  198 (203)
                      +|..+  .++|+.|++++|.+  ..+|..+
T Consensus       340 LP~~l--~~sL~~L~Ls~N~L--~~LP~~l  365 (754)
T PRK15370        340 LPASL--PPELQVLDVSKNQI--TVLPETL  365 (754)
T ss_pred             CChhh--cCcccEEECCCCCC--CcCChhh
Confidence            45444  26899999999998  4566544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.27  E-value=2.1e-11  Score=100.06  Aligned_cols=63  Identities=30%  Similarity=0.213  Sum_probs=37.8

Q ss_pred             CCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhh
Q 037699          129 SLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWL  198 (203)
Q Consensus       129 ~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~  198 (203)
                      +|+.|++++|.+. .+|.    ...+|+.|++++|+++ .+|..+..+++|+.|+|++|+++ ...|..+
T Consensus       403 ~L~~LdLS~N~Ls-sIP~----l~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls-~~~~~~L  465 (788)
T PRK15387        403 ELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS-ERTLQAL  465 (788)
T ss_pred             CCCEEEccCCcCC-CCCc----chhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC-chHHHHH
Confidence            4555555555553 3332    1234566677777766 45666777778888888888883 3444444

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.27  E-value=1.3e-13  Score=106.56  Aligned_cols=158  Identities=28%  Similarity=0.329  Sum_probs=104.8

Q ss_pred             CCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCC
Q 037699            8 SDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCK   87 (203)
Q Consensus         8 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~   87 (203)
                      +..|+.+.+..|.+. .+|..++.+..|.+++++.|+      ...+|..++.++ |+.+.++.|+++ .+|..++....
T Consensus        97 f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nq------lS~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~t  167 (722)
T KOG0532|consen   97 FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQ------LSHLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPT  167 (722)
T ss_pred             HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccch------hhcCChhhhcCc-ceeEEEecCccc-cCCcccccchh
Confidence            334445555555554 566666777777777777773      444555555554 777777777776 66777776677


Q ss_pred             ccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCcccc
Q 037699           88 LRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTL  167 (203)
Q Consensus        88 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~  167 (203)
                      |..++.+.|.+........                   .+.+|+.|.+..|.+. .+|. .+..++ |..||++.|+++ 
T Consensus       168 l~~ld~s~nei~slpsql~-------------------~l~slr~l~vrRn~l~-~lp~-El~~Lp-Li~lDfScNkis-  224 (722)
T KOG0532|consen  168 LAHLDVSKNEIQSLPSQLG-------------------YLTSLRDLNVRRNHLE-DLPE-ELCSLP-LIRLDFSCNKIS-  224 (722)
T ss_pred             HHHhhhhhhhhhhchHHhh-------------------hHHHHHHHHHhhhhhh-hCCH-HHhCCc-eeeeecccCcee-
Confidence            7777777777655443332                   4566777778777774 5555 344343 777888888887 


Q ss_pred             ccCCCCCCCCCccEEEcCCCCCCCCCCchhhh
Q 037699          168 NVSPDWIPPFQLKELNLESCNLVGNRFPSWLL  199 (203)
Q Consensus       168 ~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~  199 (203)
                      .+|-.+..+.+|++|-|.+|.+  .+-|..|+
T Consensus       225 ~iPv~fr~m~~Lq~l~LenNPL--qSPPAqIC  254 (722)
T KOG0532|consen  225 YLPVDFRKMRHLQVLQLENNPL--QSPPAQIC  254 (722)
T ss_pred             ecchhhhhhhhheeeeeccCCC--CCChHHHH
Confidence            5677778888888888888888  55666655

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.23  E-value=4.8e-11  Score=81.24  Aligned_cols=124  Identities=31%  Similarity=0.395  Sum_probs=41.9

Q ss_pred             cccEEecCCCccCCCCCcccc-CCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhh-hccCC
Q 037699           10 HLVFLDLSLNNFQGPIPRGLG-NLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSF-GRLCK   87 (203)
Q Consensus        10 ~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~   87 (203)
                      .++.|++++|.++. + +.++ .+.+|+.|++++|.     +...  +.+..++.|++|++++|.++. +...+ ..+++
T Consensus        20 ~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~-----I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~   89 (175)
T PF14580_consen   20 KLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQ-----ITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPN   89 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS-------S----TT----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred             cccccccccccccc-c-cchhhhhcCCCEEECCCCC-----Cccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence            67778888888773 2 2344 46778888888885     4432  246667788888888888873 33333 45778


Q ss_pred             ccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccc--hhhhccCCCccEEEc
Q 037699           88 LRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLF--EIHFAKLSKLKYFDV  160 (203)
Q Consensus        88 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~~~~L~~L~l  160 (203)
                      |++|++++|++.....             +..+.    .+++|+.|++.+|.+.+...  ...+..+|+|+.||-
T Consensus        90 L~~L~L~~N~I~~l~~-------------l~~L~----~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   90 LQELYLSNNKISDLNE-------------LEPLS----SLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             --EEE-TTS---SCCC-------------CGGGG----G-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CCEEECcCCcCCChHH-------------hHHHH----cCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            8888888887754211             11111    56778888888877753211  124556777777764

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.20  E-value=3e-11  Score=82.26  Aligned_cols=127  Identities=25%  Similarity=0.295  Sum_probs=49.6

Q ss_pred             cCCCCccEEeCCCCcccccccccccccccC-CCCCCCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhhhh
Q 037699           30 GNLTSLRYLDLSANISILQYLSGTFSSSVG-NLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNI  108 (203)
Q Consensus        30 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  108 (203)
                      .+...+++|++.+|.     +.. + +.+. .+.+|+.|++++|.++ .+ +.+..++.|++|++++|.+......... 
T Consensus        16 ~n~~~~~~L~L~~n~-----I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~-   85 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQ-----IST-I-ENLGATLDKLEVLDLSNNQIT-KL-EGLPGLPRLKTLDLSNNRISSISEGLDK-   85 (175)
T ss_dssp             ---------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHH-
T ss_pred             ccccccccccccccc-----ccc-c-cchhhhhcCCCEEECCCCCCc-cc-cCccChhhhhhcccCCCCCCccccchHH-
Confidence            345568999999996     433 2 2344 5678999999999998 33 3577889999999999998865333222 


Q ss_pred             ccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCC----CCCCCCCccEEEc
Q 037699          109 FSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSP----DWIPPFQLKELNL  184 (203)
Q Consensus       109 ~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~----~l~~~~~L~~L~l  184 (203)
                                       .+++|+.|++++|.+.+......+..+++|+.|++.+|.++.. +.    .+..+|+|+.||-
T Consensus        86 -----------------~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   86 -----------------NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             -----------------H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred             -----------------hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence                             4788999999999886433334677899999999999998742 22    1345778888764

>PLN03150 hypothetical protein; Provisional

Probab=99.14  E-value=2.3e-10  Score=93.22  Aligned_cols=93  Identities=31%  Similarity=0.555  Sum_probs=84.1

Q ss_pred             cccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCcc
Q 037699           10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLR   89 (203)
Q Consensus        10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~   89 (203)
                      .++.|++++|.+.+.+|..+..+.+|+.|++++|.     +.+.+|..+..+++|+.|++++|.+++.+|..++.+++|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~-----l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~  493 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNS-----IRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR  493 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCc-----ccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCC
Confidence            37789999999999999999999999999999997     7888898899999999999999999999999999999999


Q ss_pred             EEEccCCcCCcchhhhhh
Q 037699           90 SVFLSHSNMNQEISKILN  107 (203)
Q Consensus        90 ~L~l~~n~~~~~~~~~~~  107 (203)
                      +|++++|.+.+..|..+.
T Consensus       494 ~L~Ls~N~l~g~iP~~l~  511 (623)
T PLN03150        494 ILNLNGNSLSGRVPAALG  511 (623)
T ss_pred             EEECcCCcccccCChHHh
Confidence            999999999877776553

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=1.2e-11  Score=92.96  Aligned_cols=186  Identities=22%  Similarity=0.161  Sum_probs=112.2

Q ss_pred             CCcccEEecCCCccCCCCC--ccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccc-hhhhhc
Q 037699            8 SDHLVFLDLSLNNFQGPIP--RGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKI-ATSFGR   84 (203)
Q Consensus         8 ~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~   84 (203)
                      .++|+.+.+.++... ..+  +....|++++.|+++.|- .  .....+......+++|+.|+++.|.+..-. ...-..
T Consensus       120 ~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL-~--~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~  195 (505)
T KOG3207|consen  120 LKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNL-F--HNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL  195 (505)
T ss_pred             HHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhh-H--HhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence            346677777777655 222  466677778888887772 0  011223334456777777777777765211 111234


Q ss_pred             cCCccEEEccCCcCCcchhhhhhhccccccCCccccccccc-----------cCCCCCEEEccCCccccccchhhhccCC
Q 037699           85 LCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEW-----------QLSSLDSVNLSNNTLFGSLFEIHFAKLS  153 (203)
Q Consensus        85 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-----------~~~~L~~L~l~~n~l~~~~~~~~l~~~~  153 (203)
                      ++.++.|.++.|.++........    ..+++++.+.+.+.           .++.|+.|++++|.+.+.......+.++
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~----~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~  271 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWIL----LTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLP  271 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHH----HhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccccccc
Confidence            56677777777777643322211    01333333332221           4568999999999886443233567899


Q ss_pred             CccEEEccCCccccc-cCCC-----CCCCCCccEEEcCCCCCCCCCCchhhhcc
Q 037699          154 KLKYFDVSQNSLTLN-VSPD-----WIPPFQLKELNLESCNLVGNRFPSWLLSQ  201 (203)
Q Consensus       154 ~L~~L~l~~n~~~~~-~~~~-----l~~~~~L~~L~l~~n~l~~~~~p~~~~~~  201 (203)
                      .|..|+++.|.+... .++.     ....++|++|++..|++.+.+....+..+
T Consensus       272 ~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l  325 (505)
T KOG3207|consen  272 GLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTL  325 (505)
T ss_pred             chhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhcc
Confidence            999999999988753 2222     35577999999999998655554444443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.10  E-value=1.2e-09  Score=89.97  Aligned_cols=74  Identities=16%  Similarity=0.209  Sum_probs=43.5

Q ss_pred             cccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCcc
Q 037699           10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLR   89 (203)
Q Consensus        10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~   89 (203)
                      .-..|+++.+.++ .+|..+.  .+++.|++.+|.     +.. +|..   .++|++|++++|.++ .+|..   .++|+
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~-----Lt~-LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~  265 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNN-----LTS-LPAL---PPELRTLEVSGNQLT-SLPVL---PPGLL  265 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCc-----CCC-CCCC---CCCCcEEEecCCccC-cccCc---ccccc
Confidence            3446777777776 4565553  367777777764     332 3332   356777777777776 34432   34566


Q ss_pred             EEEccCCcCC
Q 037699           90 SVFLSHSNMN   99 (203)
Q Consensus        90 ~L~l~~n~~~   99 (203)
                      .|++..|.+.
T Consensus       266 ~L~Ls~N~L~  275 (788)
T PRK15387        266 ELSIFSNPLT  275 (788)
T ss_pred             eeeccCCchh
Confidence            6666666654

>PLN03150 hypothetical protein; Provisional

Probab=99.10  E-value=5.4e-10  Score=91.05  Aligned_cols=107  Identities=26%  Similarity=0.367  Sum_probs=75.8

Q ss_pred             CCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccc
Q 037699           64 IQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGS  143 (203)
Q Consensus        64 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~  143 (203)
                      ++.|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+.                  .+++|+.|++++|.+.+.
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~------------------~l~~L~~LdLs~N~lsg~  481 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG------------------SITSLEVLDLSYNSFNGS  481 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHh------------------CCCCCCEEECCCCCCCCC
Confidence            56777777777777777777777777777777777665555444                  567777777777777766


Q ss_pred             cchhhhccCCCccEEEccCCccccccCCCCCCC-CCccEEEcCCCCC
Q 037699          144 LFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPP-FQLKELNLESCNL  189 (203)
Q Consensus       144 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~-~~L~~L~l~~n~l  189 (203)
                      .|. .++.+++|+.|++++|.+++.+|..+... .++..+++.+|..
T Consensus       482 iP~-~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        482 IPE-SLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             Cch-HHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence            665 56777777778887777777777665542 3556777777764

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.07  E-value=2.9e-10  Score=64.14  Aligned_cols=61  Identities=33%  Similarity=0.406  Sum_probs=55.2

Q ss_pred             CCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCC
Q 037699          128 SSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNL  189 (203)
Q Consensus       128 ~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l  189 (203)
                      ++|+.|++++|.+. .++...|..+++|+.|++++|.++...+..+..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            46899999999995 66766899999999999999999987788999999999999999975

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.05  E-value=6.9e-10  Score=86.07  Aligned_cols=169  Identities=31%  Similarity=0.416  Sum_probs=124.6

Q ss_pred             CcccEEecCCCccCCCCCccccCCC-CccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCC
Q 037699            9 DHLVFLDLSLNNFQGPIPRGLGNLT-SLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCK   87 (203)
Q Consensus         9 ~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~   87 (203)
                      +.++.+++.++.++ .++.....+. +|+.|+++.|.      ....|..+..+++|+.|+++.|.++ .++...+..+.
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~------i~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~  187 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNK------IESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSN  187 (394)
T ss_pred             cceeEEecCCcccc-cCccccccchhhcccccccccc------hhhhhhhhhccccccccccCCchhh-hhhhhhhhhhh
Confidence            46888999999988 6666667674 99999999995      3344456788999999999999998 66776668889


Q ss_pred             ccEEEccCCcCCcchhh--hhhhccccccCCccccc--cccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCC
Q 037699           88 LRSVFLSHSNMNQEISK--ILNIFSTCILDGLEVLE--MTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQN  163 (203)
Q Consensus        88 L~~L~l~~n~~~~~~~~--~~~~~~~~~~~~l~~l~--~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n  163 (203)
                      |+.+++++|++....+.  ....+......+.....  .....+.++..+.+.+|.+.. .+. .+..++.++.|++++|
T Consensus       188 L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~-~~~-~~~~l~~l~~L~~s~n  265 (394)
T COG4886         188 LNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED-LPE-SIGNLSNLETLDLSNN  265 (394)
T ss_pred             hhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee-ccc-hhccccccceeccccc
Confidence            99999999998876554  22323333333332111  122266778888888888753 233 5678888999999999


Q ss_pred             ccccccCCCCCCCCCccEEEcCCCCC
Q 037699          164 SLTLNVSPDWIPPFQLKELNLESCNL  189 (203)
Q Consensus       164 ~~~~~~~~~l~~~~~L~~L~l~~n~l  189 (203)
                      .++... . +....+++.+++++|.+
T Consensus       266 ~i~~i~-~-~~~~~~l~~L~~s~n~~  289 (394)
T COG4886         266 QISSIS-S-LGSLTNLRELDLSGNSL  289 (394)
T ss_pred             cccccc-c-ccccCccCEEeccCccc
Confidence            998533 3 78888999999999987

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.05  E-value=2.3e-11  Score=87.90  Aligned_cols=129  Identities=25%  Similarity=0.245  Sum_probs=90.7

Q ss_pred             CCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhhhhcc
Q 037699           31 NLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFS  110 (203)
Q Consensus        31 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~  110 (203)
                      .-..|+++++++|      ....+.++..-.+.++.|++++|.++ .. ..+..+++|++||+++|.+........    
T Consensus       282 TWq~LtelDLS~N------~I~~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~----  349 (490)
T KOG1259|consen  282 TWQELTELDLSGN------LITQIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLAECVGWHL----  349 (490)
T ss_pred             hHhhhhhcccccc------chhhhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhHhhhhhHh----
Confidence            3456778888888      34445566666778888888888886 32 337788888888888887754221111    


Q ss_pred             ccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccc-cCCCCCCCCCccEEEcCCCCC
Q 037699          111 TCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLN-VSPDWIPPFQLKELNLESCNL  189 (203)
Q Consensus       111 ~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~l  189 (203)
                                     .+.+++.|.+++|.+. +..  -++.+-+|..||+++|+|... --..++.+|.|+.+.|.+|++
T Consensus       350 ---------------KLGNIKtL~La~N~iE-~LS--GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  350 ---------------KLGNIKTLKLAQNKIE-TLS--GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             ---------------hhcCEeeeehhhhhHh-hhh--hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence                           5678888888888774 322  356677788888888888642 124567888888888888888

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.01  E-value=4e-12  Score=98.43  Aligned_cols=156  Identities=24%  Similarity=0.342  Sum_probs=101.1

Q ss_pred             EEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCccEEE
Q 037699           13 FLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVF   92 (203)
Q Consensus        13 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~   92 (203)
                      ..|++.|.+. ++|..++.+..|+.+.+..|      ....+|..+..+..|..++++.|.++ .+|..+..++ |+.+.
T Consensus        79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n------~~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli  149 (722)
T KOG0532|consen   79 FADLSRNRFS-ELPEEACAFVSLESLILYHN------CIRTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI  149 (722)
T ss_pred             hhhccccccc-cCchHHHHHHHHHHHHHHhc------cceecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence            3455555554 45555555555555555555      33344555555555555555555555 4444444444 45555


Q ss_pred             ccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCC
Q 037699           93 LSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPD  172 (203)
Q Consensus        93 l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~  172 (203)
                      ++.|++.....                   +....++|..|+.+.|.+ ...+. .++++.+|..|.++.|++. ..|++
T Consensus       150 ~sNNkl~~lp~-------------------~ig~~~tl~~ld~s~nei-~slps-ql~~l~slr~l~vrRn~l~-~lp~E  207 (722)
T KOG0532|consen  150 VSNNKLTSLPE-------------------EIGLLPTLAHLDVSKNEI-QSLPS-QLGYLTSLRDLNVRRNHLE-DLPEE  207 (722)
T ss_pred             EecCccccCCc-------------------ccccchhHHHhhhhhhhh-hhchH-HhhhHHHHHHHHHhhhhhh-hCCHH
Confidence            55555442211                   111457788999999988 46666 6788999999999999988 56777


Q ss_pred             CCCCCCccEEEcCCCCCCCCCCchhhhccc
Q 037699          173 WIPPFQLKELNLESCNLVGNRFPSWLLSQK  202 (203)
Q Consensus       173 l~~~~~L~~L~l~~n~l~~~~~p~~~~~~~  202 (203)
                      +..+ .|..||+++|++  ..+|.+|.+|+
T Consensus       208 l~~L-pLi~lDfScNki--s~iPv~fr~m~  234 (722)
T KOG0532|consen  208 LCSL-PLIRLDFSCNKI--SYLPVDFRKMR  234 (722)
T ss_pred             HhCC-ceeeeecccCce--eecchhhhhhh
Confidence            7755 499999999999  88999999986

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.99  E-value=2.6e-10  Score=83.66  Aligned_cols=93  Identities=26%  Similarity=0.186  Sum_probs=57.9

Q ss_pred             CcccEEecCCCccCCCCCcc----ccCCCCccEEeCCCCcccccccccc--------cccccCCCCCCCEEEccccccCc
Q 037699            9 DHLVFLDLSLNNFQGPIPRG----LGNLTSLRYLDLSANISILQYLSGT--------FSSSVGNLTSIQTLDLSFNNLEG   76 (203)
Q Consensus         9 ~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~~~~~--------~~~~l~~~~~L~~L~l~~~~~~~   76 (203)
                      ++|++++||+|.+....++.    +..+..|++|.+.+|.+.+.+-...        ......+-++|+++..+.|.+..
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence            48888999998887554443    3467888888888886332211110        12223444567788777777652


Q ss_pred             ----cchhhhhccCCccEEEccCCcCCcc
Q 037699           77 ----KIATSFGRLCKLRSVFLSHSNMNQE  101 (203)
Q Consensus        77 ----~~~~~~~~l~~L~~L~l~~n~~~~~  101 (203)
                          .++..+...+.|+.+.+..|.+...
T Consensus       172 ~ga~~~A~~~~~~~~leevr~~qN~I~~e  200 (382)
T KOG1909|consen  172 GGATALAEAFQSHPTLEEVRLSQNGIRPE  200 (382)
T ss_pred             ccHHHHHHHHHhccccceEEEecccccCc
Confidence                2344566667777777777766543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.98  E-value=1.2e-10  Score=84.27  Aligned_cols=105  Identities=27%  Similarity=0.329  Sum_probs=58.0

Q ss_pred             CCCCCCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCc
Q 037699           60 NLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNT  139 (203)
Q Consensus        60 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~  139 (203)
                      .+..|.++|+++|.|+ .+-.++.-.|+++.|++++|.+.....  ++                  .+++|+.|++++|.
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n--La------------------~L~~L~~LDLS~N~  340 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN--LA------------------ELPQLQLLDLSGNL  340 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh--hh------------------hcccceEeecccch
Confidence            4455666666666665 455555666666666666666543221  11                  35566666666666


Q ss_pred             cccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCC
Q 037699          140 LFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNL  189 (203)
Q Consensus       140 l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l  189 (203)
                      +. .... +-..+.+.+.|.+.+|.+..  ...+..+=+|..|++.+|+|
T Consensus       341 Ls-~~~G-wh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~I  386 (490)
T KOG1259|consen  341 LA-ECVG-WHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQI  386 (490)
T ss_pred             hH-hhhh-hHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccch
Confidence            64 2222 33455666666666666542  12233344566666666665

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.96  E-value=9.8e-10  Score=61.94  Aligned_cols=59  Identities=41%  Similarity=0.479  Sum_probs=36.5

Q ss_pred             cccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccc
Q 037699           10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNN   73 (203)
Q Consensus        10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~   73 (203)
                      +|++|++++|.+....+..+..+++|++|++++|.     +....+..+..+++|+++++++|.
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-----l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-----LTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-----ESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-----cCccCHHHHcCCCCCCEEeCcCCc
Confidence            56666666666664444566666666666666664     555555556666666666666654

...

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=2.1e-09  Score=81.16  Aligned_cols=163  Identities=22%  Similarity=0.165  Sum_probs=101.4

Q ss_pred             ccCCCCccEEeCCCCcccccccccccc-cccCCCCCCCEEEccccccC--ccchhhhhccCCccEEEccCCcCCcchhhh
Q 037699           29 LGNLTSLRYLDLSANISILQYLSGTFS-SSVGNLTSIQTLDLSFNNLE--GKIATSFGRLCKLRSVFLSHSNMNQEISKI  105 (203)
Q Consensus        29 ~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  105 (203)
                      -.++.+|++..+.++.     ...... +....+++++.|+++.|-+.  ..+......+++|+.|+++.|++.-.....
T Consensus       117 Qsn~kkL~~IsLdn~~-----V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~  191 (505)
T KOG3207|consen  117 QSNLKKLREISLDNYR-----VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN  191 (505)
T ss_pred             hhhHHhhhheeecCcc-----ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc
Confidence            3567889999999874     222211 46678999999999999887  345566788999999999999886432221


Q ss_pred             h----hhccccccC--Cccccccccc--cCCCCCEEEccCCccccccchhhhccCCCccEEEccCCcccccc-CCCCCCC
Q 037699          106 L----NIFSTCILD--GLEVLEMTEW--QLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNV-SPDWIPP  176 (203)
Q Consensus       106 ~----~~~~~~~~~--~l~~l~~~~~--~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~-~~~l~~~  176 (203)
                      .    ..+....+.  ++..-++...  .+|+++.|++..|..-..... ...-++.|+.|||++|.+.... ......+
T Consensus       192 ~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~-~~~i~~~L~~LdLs~N~li~~~~~~~~~~l  270 (505)
T KOG3207|consen  192 TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKAT-STKILQTLQELDLSNNNLIDFDQGYKVGTL  270 (505)
T ss_pred             chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecc-hhhhhhHHhhccccCCcccccccccccccc
Confidence            1    111111111  1111111111  567888888888742111111 2345667888888888776432 2345667


Q ss_pred             CCccEEEcCCCCCCCCCCchh
Q 037699          177 FQLKELNLESCNLVGNRFPSW  197 (203)
Q Consensus       177 ~~L~~L~l~~n~l~~~~~p~~  197 (203)
                      +.|+.|+++.+.+++-..|+.
T Consensus       271 ~~L~~Lnls~tgi~si~~~d~  291 (505)
T KOG3207|consen  271 PGLNQLNLSSTGIASIAEPDV  291 (505)
T ss_pred             cchhhhhccccCcchhcCCCc
Confidence            888888888888865555554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.70  E-value=3.8e-09  Score=77.61  Aligned_cols=14  Identities=57%  Similarity=0.619  Sum_probs=9.4

Q ss_pred             CcccEEecCCCccC
Q 037699            9 DHLVFLDLSLNNFQ   22 (203)
Q Consensus         9 ~~L~~L~l~~~~~~   22 (203)
                      ..++.+++++|.+.
T Consensus        30 ~s~~~l~lsgnt~G   43 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFG   43 (382)
T ss_pred             CceEEEeccCCchh
Confidence            35667777777665

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.58  E-value=1.3e-07  Score=73.49  Aligned_cols=166  Identities=27%  Similarity=0.352  Sum_probs=115.0

Q ss_pred             EEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCC-CCCEEEccccccCccchhhhhccCCccEE
Q 037699           13 FLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLT-SIQTLDLSFNNLEGKIATSFGRLCKLRSV   91 (203)
Q Consensus        13 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L   91 (203)
                      .++...+.+. .....+..+..++.+++.++.      ...++....... +|+.+++++|.+. .++..+..++.|+.|
T Consensus        97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~------i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L  168 (394)
T COG4886          97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNN------ITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNL  168 (394)
T ss_pred             eeeccccccc-cCchhhhcccceeEEecCCcc------cccCccccccchhhcccccccccchh-hhhhhhhcccccccc
Confidence            3556666553 223344556788999999984      444556566664 8999999999998 666778999999999


Q ss_pred             EccCCcCCcchhh--hhhhccccccCCccccccccc--cCCCCCEEEccCCccccccchhhhccCCCccEEEccCCcccc
Q 037699           92 FLSHSNMNQEISK--ILNIFSTCILDGLEVLEMTEW--QLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTL  167 (203)
Q Consensus        92 ~l~~n~~~~~~~~--~~~~~~~~~~~~l~~l~~~~~--~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~  167 (203)
                      +++.|++....+.  ....+....+.+.+.-.++..  ....|+.+.++.|... ..+. .+..+.++..+.+..|++..
T Consensus       169 ~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~-~~~~~~~l~~l~l~~n~~~~  246 (394)
T COG4886         169 DLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLS-SLSNLKNLSGLELSNNKLED  246 (394)
T ss_pred             ccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecch-hhhhcccccccccCCceeee
Confidence            9999999876654  233344444444444444443  3445888888888532 2233 46677888888888888763


Q ss_pred             ccCCCCCCCCCccEEEcCCCCC
Q 037699          168 NVSPDWIPPFQLKELNLESCNL  189 (203)
Q Consensus       168 ~~~~~l~~~~~L~~L~l~~n~l  189 (203)
                       .+..+..++.+++|++++|.+
T Consensus       247 -~~~~~~~l~~l~~L~~s~n~i  267 (394)
T COG4886         247 -LPESIGNLSNLETLDLSNNQI  267 (394)
T ss_pred             -ccchhccccccceeccccccc
Confidence             245567777899999999998

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.54  E-value=1.6e-07  Score=79.09  Aligned_cols=82  Identities=30%  Similarity=0.328  Sum_probs=54.1

Q ss_pred             cccEEecCCCc--cCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCC
Q 037699           10 HLVFLDLSLNN--FQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCK   87 (203)
Q Consensus        10 ~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~   87 (203)
                      +|++|-+.+|.  +.....+.|..++.|+.||+++|.     -...+|..++.+.+|++|+++++.+. .+|..++++.+
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~-----~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~  619 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS-----SLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKK  619 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC-----ccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHh
Confidence            56666666664  443444456667777777777665     56666777777777777777777766 66777777777


Q ss_pred             ccEEEccCCc
Q 037699           88 LRSVFLSHSN   97 (203)
Q Consensus        88 L~~L~l~~n~   97 (203)
                      |.+|++..+.
T Consensus       620 L~~Lnl~~~~  629 (889)
T KOG4658|consen  620 LIYLNLEVTG  629 (889)
T ss_pred             hheecccccc
Confidence            7777766554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=7e-09  Score=75.08  Aligned_cols=170  Identities=17%  Similarity=0.176  Sum_probs=96.9

Q ss_pred             cccEEecCCCccCCC-CCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccc-cCc-cchhhhhccC
Q 037699           10 HLVFLDLSLNNFQGP-IPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNN-LEG-KIATSFGRLC   86 (203)
Q Consensus        10 ~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~-~~~~~~~~l~   86 (203)
                      .++.||++...++.. +...+.++.+|+.|.+.+++     +.+.+...+.+..+|+.+++++|. ++. ...--+..+.
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~-----LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs  260 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLR-----LDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCS  260 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccc-----cCcHHHHHHhccccceeeccccccccchhHHHHHHHhhh
Confidence            366677777666521 23344566677777777775     666666666666777777776653 221 1112245566


Q ss_pred             CccEEEccCCcCCcchhhhh-hhccccccCCccccccc--------------cccCCCCCEEEccCCccccccchhhhcc
Q 037699           87 KLRSVFLSHSNMNQEISKIL-NIFSTCILDGLEVLEMT--------------EWQLSSLDSVNLSNNTLFGSLFEIHFAK  151 (203)
Q Consensus        87 ~L~~L~l~~n~~~~~~~~~~-~~~~~~~~~~l~~l~~~--------------~~~~~~L~~L~l~~n~l~~~~~~~~l~~  151 (203)
                      .|..|+++.|.+.+...... +..    ...+..+.+.              ...++.+.+||+++|..........+..
T Consensus       261 ~L~~LNlsWc~l~~~~Vtv~V~hi----se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k  336 (419)
T KOG2120|consen  261 RLDELNLSWCFLFTEKVTVAVAHI----SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK  336 (419)
T ss_pred             hHhhcCchHhhccchhhhHHHhhh----chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh
Confidence            67777776665554332211 100    0111111100              1167889999998875433333336778


Q ss_pred             CCCccEEEccCCccc-cccCCCCCCCCCccEEEcCCCC
Q 037699          152 LSKLKYFDVSQNSLT-LNVSPDWIPPFQLKELNLESCN  188 (203)
Q Consensus       152 ~~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~n~  188 (203)
                      ++.|++|.++.|..- .+..-.+...|+|.+|++.++-
T Consensus       337 f~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  337 FNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             cchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence            888999999888532 1112235667789999887753

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.50  E-value=2.5e-08  Score=72.29  Aligned_cols=178  Identities=22%  Similarity=0.149  Sum_probs=101.9

Q ss_pred             cCCcccEEecCCCccCC--CCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccC-ccchhhhh
Q 037699            7 LSDHLVFLDLSLNNFQG--PIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLE-GKIATSFG   83 (203)
Q Consensus         7 ~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~   83 (203)
                      ...+++.+|+.+|.+..  ++...+.+++.|+.|+++.|.     +...+...--...+|+++.+.++.+. ...-....
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~-----L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~  143 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS-----LSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLD  143 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc-----CCCccccCcccccceEEEEEcCCCCChhhhhhhhh
Confidence            34578889999998874  244556789999999999996     33322221134558889988887765 34455667


Q ss_pred             ccCCccEEEccCCcCCcchhh-----hhh-hccccc-cCCccccccccc----cCCCCCEEEccCCccccccchhhhccC
Q 037699           84 RLCKLRSVFLSHSNMNQEISK-----ILN-IFSTCI-LDGLEVLEMTEW----QLSSLDSVNLSNNTLFGSLFEIHFAKL  152 (203)
Q Consensus        84 ~l~~L~~L~l~~n~~~~~~~~-----~~~-~~~~~~-~~~l~~l~~~~~----~~~~L~~L~l~~n~l~~~~~~~~l~~~  152 (203)
                      .+|++++++++.|........     .+. ...... ..+........+    .++++..+.++.|.+.+.-..+.+...
T Consensus       144 ~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~  223 (418)
T KOG2982|consen  144 DLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPF  223 (418)
T ss_pred             cchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCC
Confidence            788888888888843221100     000 000000 011111000000    456677777777766433333344555


Q ss_pred             CCccEEEccCCcccccc-CCCCCCCCCccEEEcCCCCC
Q 037699          153 SKLKYFDVSQNSLTLNV-SPDWIPPFQLKELNLESCNL  189 (203)
Q Consensus       153 ~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~n~l  189 (203)
                      +.+..|+|+.+++.... .+.+...++|..|.+..|++
T Consensus       224 p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl  261 (418)
T KOG2982|consen  224 PSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPL  261 (418)
T ss_pred             CcchhhhhcccccccHHHHHHHcCCchhheeeccCCcc
Confidence            66667777777665432 24556666777777777766

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=1.9e-09  Score=77.99  Aligned_cols=169  Identities=19%  Similarity=0.277  Sum_probs=106.0

Q ss_pred             ccEEecCCCccCCC-CCccccCC-CCccEEeCCCCcccccccc-cccccccCCCCCCCEEEccccccCccchhhhhccCC
Q 037699           11 LVFLDLSLNNFQGP-IPRGLGNL-TSLRYLDLSANISILQYLS-GTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCK   87 (203)
Q Consensus        11 L~~L~l~~~~~~~~-~~~~~~~l-~~L~~L~l~~~~~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~   87 (203)
                      +..+.+....+... +.+.+.-+ ..++++|+++..     ++ ..+...++.+.+|+.+.+.++.+.+.+...+.....
T Consensus       161 V~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~-----it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~  235 (419)
T KOG2120|consen  161 VIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSV-----ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSN  235 (419)
T ss_pred             eEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhh-----eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcccc
Confidence            34455554444432 33333333 348999999975     33 234455677889999999999999888888999999


Q ss_pred             ccEEEccCCcC-CcchhhhhhhccccccCCccccccccc-------------cCCCCCEEEccCCcc--ccccchhhhcc
Q 037699           88 LRSVFLSHSNM-NQEISKILNIFSTCILDGLEVLEMTEW-------------QLSSLDSVNLSNNTL--FGSLFEIHFAK  151 (203)
Q Consensus        88 L~~L~l~~n~~-~~~~~~~~~~~~~~~~~~l~~l~~~~~-------------~~~~L~~L~l~~n~l--~~~~~~~~l~~  151 (203)
                      |..++++.+.- +.......  +.  .+..+..+.+..+             --+++..|+++++.-  .+....-....
T Consensus       236 L~~lnlsm~sG~t~n~~~ll--~~--scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~r  311 (419)
T KOG2120|consen  236 LVRLNLSMCSGFTENALQLL--LS--SCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRR  311 (419)
T ss_pred             ceeeccccccccchhHHHHH--HH--hhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHh
Confidence            99999987643 22222111  00  0222333222211             225677888877632  11222224568


Q ss_pred             CCCccEEEccCC-ccccccCCCCCCCCCccEEEcCCCC
Q 037699          152 LSKLKYFDVSQN-SLTLNVSPDWIPPFQLKELNLESCN  188 (203)
Q Consensus       152 ~~~L~~L~l~~n-~~~~~~~~~l~~~~~L~~L~l~~n~  188 (203)
                      ++++..|||++| .++......+.+++.|++|.++.|-
T Consensus       312 cp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY  349 (419)
T KOG2120|consen  312 CPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY  349 (419)
T ss_pred             CCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence            899999999987 4554445567788899999999874

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.39  E-value=2.3e-07  Score=66.58  Aligned_cols=169  Identities=18%  Similarity=0.122  Sum_probs=86.6

Q ss_pred             cCCcccEEecCCCccCCCCCc----cccCCCCccEEeCCCCcccccccccccc---------cccCCCCCCCEEEccccc
Q 037699            7 LSDHLVFLDLSLNNFQGPIPR----GLGNLTSLRYLDLSANISILQYLSGTFS---------SSVGNLTSIQTLDLSFNN   73 (203)
Q Consensus         7 ~~~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~---------~~l~~~~~L~~L~l~~~~   73 (203)
                      .|++++..++|+|.+....|+    .+++-..|.+|.+++|...+.+- +.+.         .....-+.|+++....|.
T Consensus        90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG-~rigkal~~la~nKKaa~kp~Le~vicgrNR  168 (388)
T COG5238          90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAG-GRIGKALFHLAYNKKAADKPKLEVVICGRNR  168 (388)
T ss_pred             cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccch-hHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence            345777777777776654443    33455667777777775222211 1111         112234566666666666


Q ss_pred             cCc-c---chhhhhccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccc---cch
Q 037699           74 LEG-K---IATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGS---LFE  146 (203)
Q Consensus        74 ~~~-~---~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~---~~~  146 (203)
                      +.. .   .+..+..-..|+++.+..|.+.......+.....             ..+.+|+.|++++|.++-.   ...
T Consensus       169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl-------------~y~~~LevLDlqDNtft~~gS~~La  235 (388)
T COG5238         169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGL-------------FYSHSLEVLDLQDNTFTLEGSRYLA  235 (388)
T ss_pred             hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHH-------------HHhCcceeeeccccchhhhhHHHHH
Confidence            541 1   1112222235666666666665443333221111             1456777788887766521   122


Q ss_pred             hhhccCCCccEEEccCCccccccCCCC------CCCCCccEEEcCCCCC
Q 037699          147 IHFAKLSKLKYFDVSQNSLTLNVSPDW------IPPFQLKELNLESCNL  189 (203)
Q Consensus       147 ~~l~~~~~L~~L~l~~n~~~~~~~~~l------~~~~~L~~L~l~~n~l  189 (203)
                      .++..++.|..|.+.+|.++....+.+      ...++|..|...+|..
T Consensus       236 ~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~  284 (388)
T COG5238         236 DALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNER  284 (388)
T ss_pred             HHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhh
Confidence            245667777778887777764322211      1233555555555544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.37  E-value=2.9e-09  Score=85.37  Aligned_cols=40  Identities=30%  Similarity=0.398  Sum_probs=17.4

Q ss_pred             ccCCCCCCCEEEccccccCccchhhhhccCCccEEEccCCcC
Q 037699           57 SVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNM   98 (203)
Q Consensus        57 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~   98 (203)
                      .+.-++.++.|++++|+++..  ..+..+++|++||+++|.+
T Consensus       182 SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L  221 (1096)
T KOG1859|consen  182 SLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCL  221 (1096)
T ss_pred             HHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchh
Confidence            333344444444444444411  1344444444455444443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.37  E-value=3.6e-07  Score=76.95  Aligned_cols=87  Identities=33%  Similarity=0.395  Sum_probs=74.6

Q ss_pred             ccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhh
Q 037699            4 VFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFG   83 (203)
Q Consensus         4 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~   83 (203)
                      +|..++.|++||+++|.-.+.+|..++.+-+|++|+++++      ....+|..+.++..|.+|++..+......+....
T Consensus       566 ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t------~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~  639 (889)
T KOG4658|consen  566 FFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT------GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILL  639 (889)
T ss_pred             HHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC------CccccchHHHHHHhhheeccccccccccccchhh
Confidence            4677889999999999777799999999999999999998      4558899999999999999998876645566666


Q ss_pred             ccCCccEEEccCC
Q 037699           84 RLCKLRSVFLSHS   96 (203)
Q Consensus        84 ~l~~L~~L~l~~n   96 (203)
                      .+++|++|.+...
T Consensus       640 ~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  640 ELQSLRVLRLPRS  652 (889)
T ss_pred             hcccccEEEeecc
Confidence            7999999988654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.29  E-value=1.8e-08  Score=80.94  Aligned_cols=39  Identities=28%  Similarity=0.368  Sum_probs=30.4

Q ss_pred             CCCCEEEccccccCccchhhhhccCCccEEEccCCcCCcc
Q 037699           62 TSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQE  101 (203)
Q Consensus        62 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  101 (203)
                      -.|.+.+.++|.++ .+-.++.-++-+++|++++|++...
T Consensus       164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v  202 (1096)
T KOG1859|consen  164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV  202 (1096)
T ss_pred             hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh
Confidence            35677777888776 6667778888899999999988754

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.22  E-value=8.4e-07  Score=46.12  Aligned_cols=36  Identities=28%  Similarity=0.525  Sum_probs=15.6

Q ss_pred             CCCEEEccCCccccccchhhhccCCCccEEEccCCccc
Q 037699          129 SLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT  166 (203)
Q Consensus       129 ~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~  166 (203)
                      +|++|++++|.+. .++. .++.+++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~-~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPP-ELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGG-HGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCc-hHhCCCCCCEEEecCCCCC
Confidence            3445555555553 2332 2444555555555555444

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.19  E-value=1.6e-07  Score=60.60  Aligned_cols=104  Identities=22%  Similarity=0.230  Sum_probs=52.3

Q ss_pred             CCEEEccccccCccchhhhhc---cCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCcc
Q 037699           64 IQTLDLSFNNLEGKIATSFGR---LCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTL  140 (203)
Q Consensus        64 L~~L~l~~~~~~~~~~~~~~~---l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l  140 (203)
                      +..++++.|.+. .++.....   ...|...++++|.+..+.+++..                  .++..+.+++++|.+
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~------------------kf~t~t~lNl~~nei   89 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTI------------------KFPTATTLNLANNEI   89 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhh------------------ccchhhhhhcchhhh
Confidence            444555555544 33333332   23344456666666555444433                  344555666666666


Q ss_pred             ccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCC
Q 037699          141 FGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNL  189 (203)
Q Consensus       141 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l  189 (203)
                      + ++|. .+..++.|+.++++.|.+.. .+..+..+-++-.|+..+|.+
T Consensus        90 s-dvPe-E~Aam~aLr~lNl~~N~l~~-~p~vi~~L~~l~~Lds~~na~  135 (177)
T KOG4579|consen   90 S-DVPE-ELAAMPALRSLNLRFNPLNA-EPRVIAPLIKLDMLDSPENAR  135 (177)
T ss_pred             h-hchH-HHhhhHHhhhcccccCcccc-chHHHHHHHhHHHhcCCCCcc
Confidence            3 4444 25556666666666666553 233333344555555555554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.17  E-value=3.8e-07  Score=71.30  Aligned_cols=87  Identities=28%  Similarity=0.267  Sum_probs=51.1

Q ss_pred             ccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhcc
Q 037699            6 GLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRL   85 (203)
Q Consensus         6 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l   85 (203)
                      ..+++++.+++.+|.+. .+...+..+.+|++|++++|.     +...  ..+..++.|+.|++.+|.+..  ...+..+
T Consensus        92 ~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~-----I~~i--~~l~~l~~L~~L~l~~N~i~~--~~~~~~l  161 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNK-----ITKL--EGLSTLTLLKELNLSGNLISD--ISGLESL  161 (414)
T ss_pred             ccccceeeeeccccchh-hcccchhhhhcchheeccccc-----cccc--cchhhccchhhheeccCcchh--ccCCccc
Confidence            34456677777777766 233335567777777777774     3333  224455557777777777652  1233446


Q ss_pred             CCccEEEccCCcCCcch
Q 037699           86 CKLRSVFLSHSNMNQEI  102 (203)
Q Consensus        86 ~~L~~L~l~~n~~~~~~  102 (203)
                      ..|+.+++++|.+....
T Consensus       162 ~~L~~l~l~~n~i~~ie  178 (414)
T KOG0531|consen  162 KSLKLLDLSYNRIVDIE  178 (414)
T ss_pred             hhhhcccCCcchhhhhh
Confidence            66777777777665433

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.14  E-value=5.9e-06  Score=42.92  Aligned_cols=37  Identities=24%  Similarity=0.442  Sum_probs=23.4

Q ss_pred             CCCEEEccccccCccchhhhhccCCccEEEccCCcCCc
Q 037699           63 SIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQ  100 (203)
Q Consensus        63 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  100 (203)
                      +|++|++++|.++ .+|..++.+++|+.|++++|++..
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            5667777777776 455556777777777777776654

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.13  E-value=3.6e-07  Score=71.44  Aligned_cols=107  Identities=27%  Similarity=0.345  Sum_probs=56.0

Q ss_pred             cCCCCCCCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccC
Q 037699           58 VGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSN  137 (203)
Q Consensus        58 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~  137 (203)
                      +..+.+++.+++.+|.+. .+...+..+++|+++++++|.+.....-             .       .++.|+.|++.+
T Consensus        91 l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~l-------------~-------~l~~L~~L~l~~  149 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEGL-------------S-------TLTLLKELNLSG  149 (414)
T ss_pred             cccccceeeeeccccchh-hcccchhhhhcchheeccccccccccch-------------h-------hccchhhheecc
Confidence            455566666666666665 3323255566666666666666542111             0       334466666666


Q ss_pred             CccccccchhhhccCCCccEEEccCCccccccC-CCCCCCCCccEEEcCCCCC
Q 037699          138 NTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVS-PDWIPPFQLKELNLESCNL  189 (203)
Q Consensus       138 n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~l  189 (203)
                      |.+. .+.  .+..+..|+.+++++|.++..-. . ...+.+++.+.+.+|.+
T Consensus       150 N~i~-~~~--~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  150 NLIS-DIS--GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI  198 (414)
T ss_pred             Ccch-hcc--CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence            6653 222  23345566666666666553211 1 34455555556655554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.11  E-value=2.2e-06  Score=61.71  Aligned_cols=186  Identities=18%  Similarity=0.186  Sum_probs=104.3

Q ss_pred             CCcccEEecCCCccCCC----CCccccCCCCccEEeCCCCcccccccccc-------cccccCCCCCCCEEEccccccCc
Q 037699            8 SDHLVFLDLSLNNFQGP----IPRGLGNLTSLRYLDLSANISILQYLSGT-------FSSSVGNLTSIQTLDLSFNNLEG   76 (203)
Q Consensus         8 ~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-------~~~~l~~~~~L~~L~l~~~~~~~   76 (203)
                      ...++.+++|+|-+..+    +...+..-.+|+..+++.--  +....+.       +.+.+-+++.|+.+++++|.+..
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f--tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~  106 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF--TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS  106 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh--hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence            34677889999887743    33334445666666665431  0001111       22234566777777777777765


Q ss_pred             cchhh----hhccCCccEEEccCCcCCcchhhhhh----------------hccccccCCcccccccc--c-----cCCC
Q 037699           77 KIATS----FGRLCKLRSVFLSHSNMNQEISKILN----------------IFSTCILDGLEVLEMTE--W-----QLSS  129 (203)
Q Consensus        77 ~~~~~----~~~l~~L~~L~l~~n~~~~~~~~~~~----------------~~~~~~~~~l~~l~~~~--~-----~~~~  129 (203)
                      ..|..    +..-..|.+|.+.+|.+......-++                .+....+...+....+.  +     .-..
T Consensus       107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~  186 (388)
T COG5238         107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN  186 (388)
T ss_pred             ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence            44433    34455677777777765433221111                00111111111111110  1     1147


Q ss_pred             CCEEEccCCccccccch----hhhccCCCccEEEccCCcccccc----CCCCCCCCCccEEEcCCCCCCCCCCc
Q 037699          130 LDSVNLSNNTLFGSLFE----IHFAKLSKLKYFDVSQNSLTLNV----SPDWIPPFQLKELNLESCNLVGNRFP  195 (203)
Q Consensus       130 L~~L~l~~n~l~~~~~~----~~l~~~~~L~~L~l~~n~~~~~~----~~~l~~~~~L~~L~l~~n~l~~~~~p  195 (203)
                      |+.+.+..|.+.-....    .-+..+.+|+.||+++|.++...    ...+..|+.|++|.+..|-++..-..
T Consensus       187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~  260 (388)
T COG5238         187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVK  260 (388)
T ss_pred             ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHH
Confidence            89999999988532111    12357889999999999988432    34456788899999999988644333

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.01  E-value=2.6e-07  Score=59.62  Aligned_cols=89  Identities=25%  Similarity=0.242  Sum_probs=59.0

Q ss_pred             cccEEecCCCccCCCCCcccc---CCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccC
Q 037699           10 HLVFLDLSLNNFQGPIPRGLG---NLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLC   86 (203)
Q Consensus        10 ~L~~L~l~~~~~~~~~~~~~~---~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~   86 (203)
                      .+..++++.|.+. .++....   +...|+..++++|.     +.+..+..-.+.+.+.+++++.|.++ .+|..+..|+
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~-----fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~  100 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNG-----FKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMP  100 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccch-----hhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhH
Confidence            3455777777765 3444433   33456666888885     44443333344557888888888887 7788888888


Q ss_pred             CccEEEccCCcCCcchhhh
Q 037699           87 KLRSVFLSHSNMNQEISKI  105 (203)
Q Consensus        87 ~L~~L~l~~n~~~~~~~~~  105 (203)
                      .|+.++++.|++.......
T Consensus       101 aLr~lNl~~N~l~~~p~vi  119 (177)
T KOG4579|consen  101 ALRSLNLRFNPLNAEPRVI  119 (177)
T ss_pred             HhhhcccccCccccchHHH
Confidence            8888888888877554433

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.96  E-value=8.1e-06  Score=67.38  Aligned_cols=60  Identities=15%  Similarity=0.195  Sum_probs=34.4

Q ss_pred             cCCCCCEEEccCCcccccc--ch---hhhccCCCccEEEccCCccccccCCC-CCCCCCccEEEcC
Q 037699          126 QLSSLDSVNLSNNTLFGSL--FE---IHFAKLSKLKYFDVSQNSLTLNVSPD-WIPPFQLKELNLE  185 (203)
Q Consensus       126 ~~~~L~~L~l~~n~l~~~~--~~---~~l~~~~~L~~L~l~~n~~~~~~~~~-l~~~~~L~~L~l~  185 (203)
                      .+++|+.||++.....+..  ..   .....++.|+.||.+++.++....+. +...++|+.+.+-
T Consensus       218 ~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~  283 (699)
T KOG3665|consen  218 NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAAL  283 (699)
T ss_pred             cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence            6778888888776553221  11   12235678888888888777544332 2344455555433

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.96  E-value=0.00012  Score=56.57  Aligned_cols=73  Identities=12%  Similarity=0.129  Sum_probs=47.6

Q ss_pred             CCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEcccc-ccCccchhhhhccC
Q 037699            8 SDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFN-NLEGKIATSFGRLC   86 (203)
Q Consensus         8 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~l~   86 (203)
                      +++++.|++++|.++ .+|.   -..+|++|.++++.     ....+|..+.  .+|+.|.+++| .+. .+|.      
T Consensus        51 ~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~-----nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------  112 (426)
T PRK15386         51 ARASGRLYIKDCDIE-SLPV---LPNELTEITIENCN-----NLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------  112 (426)
T ss_pred             hcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCC-----CcccCCchhh--hhhhheEccCccccc-cccc------
Confidence            358889999999777 4552   12458899998875     4445555442  47889999888 443 4443      


Q ss_pred             CccEEEccCCcC
Q 037699           87 KLRSVFLSHSNM   98 (203)
Q Consensus        87 ~L~~L~l~~n~~   98 (203)
                      .|+.|++..+..
T Consensus       113 sLe~L~L~~n~~  124 (426)
T PRK15386        113 SVRSLEIKGSAT  124 (426)
T ss_pred             ccceEEeCCCCC
Confidence            466677665543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.95  E-value=3.7e-05  Score=53.04  Aligned_cols=128  Identities=20%  Similarity=0.164  Sum_probs=78.6

Q ss_pred             ccEEecCCCccCCCCCcccc-CCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCcc
Q 037699           11 LVFLDLSLNNFQGPIPRGLG-NLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLR   89 (203)
Q Consensus        11 L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~   89 (203)
                      =+.+++.+..+... .. ++ -+.+...+++++|.     +...  ..+..++.|++|.+..|.|+...|.--..+++|+
T Consensus        21 e~e~~LR~lkip~i-en-lg~~~d~~d~iDLtdNd-----l~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~   91 (233)
T KOG1644|consen   21 ERELDLRGLKIPVI-EN-LGATLDQFDAIDLTDND-----LRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLK   91 (233)
T ss_pred             ccccccccccccch-hh-ccccccccceecccccc-----hhhc--ccCCCccccceEEecCCcceeeccchhhhccccc
Confidence            34566666554411 11 11 13456678888885     3322  3466778889999999998855555555667888


Q ss_pred             EEEccCCcCCcchh-hhhhhccccccCCccccccccccCCCCCEEEccCCcccccc--chhhhccCCCccEEEccCCcc
Q 037699           90 SVFLSHSNMNQEIS-KILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSL--FEIHFAKLSKLKYFDVSQNSL  165 (203)
Q Consensus        90 ~L~l~~n~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~~~~L~~L~l~~n~~  165 (203)
                      .|.+.+|.+..... .-++                  .+|.|++|.+-+|.....-  -...+..+++++.||+++-..
T Consensus        92 ~L~LtnNsi~~l~dl~pLa------------------~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen   92 TLILTNNSIQELGDLDPLA------------------SCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             eEEecCcchhhhhhcchhc------------------cCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            88888887765322 1111                  5678888888887664211  112345677888888776543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.86  E-value=6.4e-06  Score=67.94  Aligned_cols=39  Identities=23%  Similarity=0.335  Sum_probs=17.8

Q ss_pred             CCCCCEEEccccccC-ccchhhhhccCCccEEEccCCcCC
Q 037699           61 LTSIQTLDLSFNNLE-GKIATSFGRLCKLRSVFLSHSNMN   99 (203)
Q Consensus        61 ~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~n~~~   99 (203)
                      +|+|+.|.+++-.+. +..-....++++|..||+++..+.
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~  186 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS  186 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCcc
Confidence            445555555543332 122233344555555555555443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.72  E-value=5.6e-05  Score=55.37  Aligned_cols=174  Identities=22%  Similarity=0.193  Sum_probs=95.7

Q ss_pred             ccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCccccccccc-ccccccCCCCCCCEEEccccccCc--cchh
Q 037699            4 VFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSG-TFSSSVGNLTSIQTLDLSFNNLEG--KIAT   80 (203)
Q Consensus         4 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~--~~~~   80 (203)
                      +...+++|++|+++.|.+...+...-..+.+|+.|.+.+..     +.. .....+..++.++.+.++.|.+..  ....
T Consensus        92 ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~-----L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~  166 (418)
T KOG2982|consen   92 ILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTG-----LSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDN  166 (418)
T ss_pred             HHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCC-----CChhhhhhhhhcchhhhhhhhccchhhhhccccc
Confidence            44677899999999999885544333567899999999986     433 334446677788888888875431  1111


Q ss_pred             hhhccC-CccEEEccCCcCC--cchhhhhhhc---cccc-cCC-ccccccc--cccCCCCCEEEccCCccccccc-hhhh
Q 037699           81 SFGRLC-KLRSVFLSHSNMN--QEISKILNIF---STCI-LDG-LEVLEMT--EWQLSSLDSVNLSNNTLFGSLF-EIHF  149 (203)
Q Consensus        81 ~~~~l~-~L~~L~l~~n~~~--~~~~~~~~~~---~~~~-~~~-l~~l~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l  149 (203)
                      ...... .+++++...|...  .........|   .... +.+ ++.....  ....+.+..|+++.+++ |++. ...+
T Consensus       167 c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~i-dswasvD~L  245 (418)
T KOG2982|consen  167 CIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNI-DSWASVDAL  245 (418)
T ss_pred             cccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhccccc-ccHHHHHHH
Confidence            111111 2333333333210  0000000000   0000 000 0011100  11567778899999988 4443 3467


Q ss_pred             ccCCCccEEEccCCccccccCC------CCCCCCCccEEE
Q 037699          150 AKLSKLKYFDVSQNSLTLNVSP------DWIPPFQLKELN  183 (203)
Q Consensus       150 ~~~~~L~~L~l~~n~~~~~~~~------~l~~~~~L~~L~  183 (203)
                      .+++.+.-|.++.+.+......      .++.+++++.|+
T Consensus       246 n~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  246 NGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN  285 (418)
T ss_pred             cCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence            8889999999999888643221      134566777765

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.71  E-value=7.8e-05  Score=51.50  Aligned_cols=105  Identities=18%  Similarity=0.212  Sum_probs=77.6

Q ss_pred             CCCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCcccc
Q 037699           63 SIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFG  142 (203)
Q Consensus        63 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~  142 (203)
                      ....+|+++|.+.  .-..+..++.|.+|.+..|.+....+....                  .+++|+.|.+.+|.+..
T Consensus        43 ~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~------------------~~p~l~~L~LtnNsi~~  102 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDT------------------FLPNLKTLILTNNSIQE  102 (233)
T ss_pred             ccceecccccchh--hcccCCCccccceEEecCCcceeeccchhh------------------hccccceEEecCcchhh
Confidence            5678899999886  224567788999999999999876665443                  56789999999998853


Q ss_pred             ccchhhhccCCCccEEEccCCcccccc---CCCCCCCCCccEEEcCCC
Q 037699          143 SLFEIHFAKLSKLKYFDVSQNSLTLNV---SPDWIPPFQLKELNLESC  187 (203)
Q Consensus       143 ~~~~~~l~~~~~L~~L~l~~n~~~~~~---~~~l~~~~~L~~L~l~~n  187 (203)
                      -.....+..|++|+.|.+-+|.++...   .=.+..+|+|+.||+++=
T Consensus       103 l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  103 LGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             hhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            322235678999999999999887421   112456889999998753

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.33  E-value=0.002  Score=41.72  Aligned_cols=37  Identities=16%  Similarity=0.179  Sum_probs=12.5

Q ss_pred             cccCCcccEEecCCCccCCCCCccccCCCCccEEeCCC
Q 037699            5 FGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSA   42 (203)
Q Consensus         5 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~   42 (203)
                      |..+.+|+.+.+.. .+.......+..+.+++.+.+..
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~   44 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN   44 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhcccccccccccccc
Confidence            33344455555443 22223333444444455554444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.19  E-value=1.6e-05  Score=57.58  Aligned_cols=83  Identities=13%  Similarity=0.060  Sum_probs=43.8

Q ss_pred             CCCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCcccc
Q 037699           63 SIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFG  142 (203)
Q Consensus        63 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~  142 (203)
                      +.+.|+.-+|.+++.  +....|+.|+.|.++.|+++...+-.                    .+++|++|+|..|.+.+
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~pl~--------------------rCtrLkElYLRkN~I~s   77 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAPLQ--------------------RCTRLKELYLRKNCIES   77 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchhHH--------------------HHHHHHHHHHHhccccc
Confidence            444555555555422  23455666666666666665432211                    45556666666666542


Q ss_pred             ccchhhhccCCCccEEEccCCcccc
Q 037699          143 SLFEIHFAKLSKLKYFDVSQNSLTL  167 (203)
Q Consensus       143 ~~~~~~l~~~~~L~~L~l~~n~~~~  167 (203)
                      -.-...+.++++|+.|+|..|.-.+
T Consensus        78 ldEL~YLknlpsLr~LWL~ENPCc~  102 (388)
T KOG2123|consen   78 LDELEYLKNLPSLRTLWLDENPCCG  102 (388)
T ss_pred             HHHHHHHhcCchhhhHhhccCCccc
Confidence            2222245566666666666665443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.15  E-value=0.00029  Score=50.51  Aligned_cols=68  Identities=18%  Similarity=0.217  Sum_probs=35.1

Q ss_pred             CCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEcccc--ccCccchhhhhccCCccEEEccCCcCC
Q 037699           25 IPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFN--NLEGKIATSFGRLCKLRSVFLSHSNMN   99 (203)
Q Consensus        25 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~n~~~   99 (203)
                      +......+..++.+.+.+..     ++..  ..+..+++|++|.++.|  .+...++.....+++|++++++.|++.
T Consensus        35 ~~gl~d~~~~le~ls~~n~g-----ltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~  104 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVG-----LTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK  104 (260)
T ss_pred             cccccccccchhhhhhhccc-----eeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence            33333444555555555543     2221  22345566666666666  444444444444566666666666654

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.14  E-value=0.0037  Score=48.55  Aligned_cols=149  Identities=10%  Similarity=0.022  Sum_probs=78.5

Q ss_pred             CCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhhhhcc
Q 037699           31 NLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFS  110 (203)
Q Consensus        31 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~  110 (203)
                      .+.+++.|++++|.      ...+|. +  -.+|+.|.+++|.-...+|..+  ..+|+.|++.+|......|..+..+.
T Consensus        50 ~~~~l~~L~Is~c~------L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~sLe~L~  118 (426)
T PRK15386         50 EARASGRLYIKDCD------IESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPESVRSLE  118 (426)
T ss_pred             HhcCCCEEEeCCCC------CcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccccceEE
Confidence            46889999999884      333342 1  1268999998765544566544  25799999998832222333222211


Q ss_pred             ccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCC--
Q 037699          111 TCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCN--  188 (203)
Q Consensus       111 ~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~--  188 (203)
                      .. ......+.   .-.++|+.|.+..+........ .-.-.++|+.|++++|... ..|+.+.  .+|+.|.++.+.  
T Consensus       119 L~-~n~~~~L~---~LPssLk~L~I~~~n~~~~~~l-p~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~~~  190 (426)
T PRK15386        119 IK-GSATDSIK---NVPNGLTSLSINSYNPENQARI-DNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQKT  190 (426)
T ss_pred             eC-CCCCcccc---cCcchHhheecccccccccccc-ccccCCcccEEEecCCCcc-cCccccc--ccCcEEEecccccc
Confidence            10 00000000   0124566776643221100000 0001257999999988755 2333222  488999988763  


Q ss_pred             ---CCCCCCchhh
Q 037699          189 ---LVGNRFPSWL  198 (203)
Q Consensus       189 ---l~~~~~p~~~  198 (203)
                         +....+|+.+
T Consensus       191 sLeI~~~sLP~nl  203 (426)
T PRK15386        191 TWNISFEGFPDGL  203 (426)
T ss_pred             cccCccccccccc
Confidence               3334555544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.09  E-value=0.00043  Score=49.65  Aligned_cols=86  Identities=21%  Similarity=0.272  Sum_probs=57.3

Q ss_pred             cccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCc-cchhhhhccCCc
Q 037699           10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEG-KIATSFGRLCKL   88 (203)
Q Consensus        10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L   88 (203)
                      .++.+++.++.++  .-..+..+++|+.|.++.|..   +....++-....+++|+++++++|++.. ........+.+|
T Consensus        44 ~le~ls~~n~glt--t~~~~P~Lp~LkkL~lsdn~~---~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   44 ELELLSVINVGLT--TLTNFPKLPKLKKLELSDNYR---RVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL  118 (260)
T ss_pred             chhhhhhhcccee--ecccCCCcchhhhhcccCCcc---cccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence            4555555555554  223456788999999999821   0455555556677999999999999872 222334566778


Q ss_pred             cEEEccCCcCCc
Q 037699           89 RSVFLSHSNMNQ  100 (203)
Q Consensus        89 ~~L~l~~n~~~~  100 (203)
                      ..|++..|....
T Consensus       119 ~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  119 KSLDLFNCSVTN  130 (260)
T ss_pred             hhhhcccCCccc
Confidence            888888876554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.07  E-value=0.0046  Score=39.95  Aligned_cols=60  Identities=17%  Similarity=0.241  Sum_probs=25.2

Q ss_pred             cccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCccEEEcc
Q 037699           28 GLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLS   94 (203)
Q Consensus        28 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~   94 (203)
                      .+..+.+|+.+.+...      +.......+..+.+++.+.+..+ +...-...|..+..++.+.+.
T Consensus         7 ~F~~~~~l~~i~~~~~------~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen    7 AFYNCSNLESITFPNT------IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             TTTT-TT--EEEETST--------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred             HHhCCCCCCEEEECCC------eeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence            4555666666666543      44444455555656666666553 332222334444455555553

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.66  E-value=0.00053  Score=29.74  Aligned_cols=19  Identities=37%  Similarity=0.474  Sum_probs=9.2

Q ss_pred             ccEEEcCCCCCCCCCCchhhh
Q 037699          179 LKELNLESCNLVGNRFPSWLL  199 (203)
Q Consensus       179 L~~L~l~~n~l~~~~~p~~~~  199 (203)
                      |++|++++|.+  ..+|.++.
T Consensus         2 L~~Ldls~n~l--~~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNL--TSIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEE--SEEGTTTT
T ss_pred             ccEEECCCCcC--EeCChhhc
Confidence            45555555555  24454443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.13  E-value=0.0019  Score=51.50  Aligned_cols=15  Identities=20%  Similarity=0.142  Sum_probs=7.2

Q ss_pred             ccCCCccEEEccCCc
Q 037699          150 AKLSKLKYFDVSQNS  164 (203)
Q Consensus       150 ~~~~~L~~L~l~~n~  164 (203)
                      ..+++++.+.+.++.
T Consensus       359 ~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  359 RSCPKLTDLSLSYCG  373 (482)
T ss_pred             hcCCCcchhhhhhhh
Confidence            344445555544444

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.11  E-value=0.004  Score=26.87  Aligned_cols=18  Identities=39%  Similarity=0.792  Sum_probs=10.6

Q ss_pred             ccEEEccCCccccccCCCC
Q 037699          155 LKYFDVSQNSLTLNVSPDW  173 (203)
Q Consensus       155 L~~L~l~~n~~~~~~~~~l  173 (203)
                      |+.|++++|.++ .+|+.+
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            566666666666 444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.71  E-value=0.0065  Score=24.40  Aligned_cols=12  Identities=33%  Similarity=0.587  Sum_probs=5.5

Q ss_pred             CccEEEcCCCCC
Q 037699          178 QLKELNLESCNL  189 (203)
Q Consensus       178 ~L~~L~l~~n~l  189 (203)
                      +|+.|++++|++
T Consensus         2 ~L~~L~l~~n~L   13 (17)
T PF13504_consen    2 NLRTLDLSNNRL   13 (17)
T ss_dssp             T-SEEEETSS--
T ss_pred             ccCEEECCCCCC
Confidence            456666666665

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.53  E-value=0.00047  Score=50.24  Aligned_cols=83  Identities=20%  Similarity=0.143  Sum_probs=50.6

Q ss_pred             cccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccc-hhhhhccCCc
Q 037699           10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKI-ATSFGRLCKL   88 (203)
Q Consensus        10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L   88 (203)
                      +++.|++.+|.++++.  ...+++.|+.|.|+-|.     +...-  .+..+..|+.|++..|.|.... -..+.++++|
T Consensus        20 ~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNk-----IssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsL   90 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNK-----ISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSL   90 (388)
T ss_pred             HhhhhcccCCCccHHH--HHHhcccceeEEeeccc-----cccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence            5667777777776431  23457777777777775     43332  2456667777777777776211 1345667777


Q ss_pred             cEEEccCCcCCcc
Q 037699           89 RSVFLSHSNMNQE  101 (203)
Q Consensus        89 ~~L~l~~n~~~~~  101 (203)
                      +.|.+..|+--+.
T Consensus        91 r~LWL~ENPCc~~  103 (388)
T KOG2123|consen   91 RTLWLDENPCCGE  103 (388)
T ss_pred             hhHhhccCCcccc
Confidence            7777777665443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.10  E-value=0.018  Score=45.90  Aligned_cols=38  Identities=18%  Similarity=0.161  Sum_probs=18.1

Q ss_pred             CCCCCCEEEccccc-cCccchhhhhc-cCCccEEEccCCc
Q 037699           60 NLTSIQTLDLSFNN-LEGKIATSFGR-LCKLRSVFLSHSN   97 (203)
Q Consensus        60 ~~~~L~~L~l~~~~-~~~~~~~~~~~-l~~L~~L~l~~n~   97 (203)
                      .+++++.++++++. +++..-..+.. +++|+.|.+..+.
T Consensus       241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~  280 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCS  280 (482)
T ss_pred             hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCC
Confidence            34555666666555 44322222222 4556666554444

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.67  E-value=0.00026  Score=56.20  Aligned_cols=178  Identities=25%  Similarity=0.248  Sum_probs=87.0

Q ss_pred             ccEEecCCCccCCC----CCccccCCCCccEEeCCCCcccccccccccccccCCC-CCCCEEEccccccCc----cchhh
Q 037699           11 LVFLDLSLNNFQGP----IPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNL-TSIQTLDLSFNNLEG----KIATS   81 (203)
Q Consensus        11 L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~----~~~~~   81 (203)
                      +..+.+.+|.+...    +..++.....|+.+++++|... ......+...+... ..++++.+..|.++.    .++..
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~-~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG-DEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc-cHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            55566666666532    3334455666777777776411 11111122222222 345666666666653    23334


Q ss_pred             hhccCCccEEEccCCcCCcchhhhh-hhccc--cccCCcccccccc---------------ccCCC-CCEEEccCCcccc
Q 037699           82 FGRLCKLRSVFLSHSNMNQEISKIL-NIFST--CILDGLEVLEMTE---------------WQLSS-LDSVNLSNNTLFG  142 (203)
Q Consensus        82 ~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~~--~~~~~l~~l~~~~---------------~~~~~-L~~L~l~~n~l~~  142 (203)
                      +.....++.+++..|.+........ ..+..  ....+++.+.+..               ...+. +..++++.|.+.+
T Consensus       168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence            4445556666666665532211111 01100  0011111111100               01223 5568888887754


Q ss_pred             ccchh---hhccC-CCccEEEccCCcccccc----CCCCCCCCCccEEEcCCCCC
Q 037699          143 SLFEI---HFAKL-SKLKYFDVSQNSLTLNV----SPDWIPPFQLKELNLESCNL  189 (203)
Q Consensus       143 ~~~~~---~l~~~-~~L~~L~l~~n~~~~~~----~~~l~~~~~L~~L~l~~n~l  189 (203)
                      .....   .+..+ ..++.+++++|.++...    ...+..+++++++.++.|.+
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l  302 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL  302 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence            42221   22333 45678888888887532    34455666888888888887

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.63  E-value=0.04  Score=24.64  Aligned_cols=21  Identities=29%  Similarity=0.460  Sum_probs=14.0

Q ss_pred             CCccEEEcCCCCCCCCCCchhhh
Q 037699          177 FQLKELNLESCNLVGNRFPSWLL  199 (203)
Q Consensus       177 ~~L~~L~l~~n~l~~~~~p~~~~  199 (203)
                      ++|+.|+|++|.+  ..+|....
T Consensus         2 ~~L~~L~L~~N~l--~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQL--SSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcC--CcCCHHHc
Confidence            4567777777777  56666544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.63  E-value=0.04  Score=24.64  Aligned_cols=21  Identities=29%  Similarity=0.460  Sum_probs=14.0

Q ss_pred             CCccEEEcCCCCCCCCCCchhhh
Q 037699          177 FQLKELNLESCNLVGNRFPSWLL  199 (203)
Q Consensus       177 ~~L~~L~l~~n~l~~~~~p~~~~  199 (203)
                      ++|+.|+|++|.+  ..+|....
T Consensus         2 ~~L~~L~L~~N~l--~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQL--SSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcC--CcCCHHHc
Confidence            4567777777777  56666544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.59  E-value=0.005  Score=42.80  Aligned_cols=61  Identities=21%  Similarity=0.208  Sum_probs=30.3

Q ss_pred             cCCCCCEEEccCCccccccchhhhc-cCCCccEEEccCC-ccccccCCCCCCCCCccEEEcCC
Q 037699          126 QLSSLDSVNLSNNTLFGSLFEIHFA-KLSKLKYFDVSQN-SLTLNVSPDWIPPFQLKELNLES  186 (203)
Q Consensus       126 ~~~~L~~L~l~~n~l~~~~~~~~l~-~~~~L~~L~l~~n-~~~~~~~~~l~~~~~L~~L~l~~  186 (203)
                      .++.++.|.+..+.-.++....-++ -.++|+.|++++| +||......+..+++|+.|.+.+
T Consensus       123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~  185 (221)
T KOG3864|consen  123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD  185 (221)
T ss_pred             ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence            4555666666555444433322222 2356666666655 45543334445555555555543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.90  E-value=0.02  Score=39.90  Aligned_cols=34  Identities=21%  Similarity=0.144  Sum_probs=15.7

Q ss_pred             cccEEecCCCccCCCCCccccCCCCccEEeCCCC
Q 037699           10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN   43 (203)
Q Consensus        10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~   43 (203)
                      .++.++-+++.+..+--+.+..+..++.+.+.++
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c  135 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC  135 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence            3444444444444333334444444555555544

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=92.62  E-value=0.057  Score=23.61  Aligned_cols=13  Identities=46%  Similarity=0.690  Sum_probs=5.5

Q ss_pred             CCCEEEccccccC
Q 037699           63 SIQTLDLSFNNLE   75 (203)
Q Consensus        63 ~L~~L~l~~~~~~   75 (203)
                      +|++|++++|.++
T Consensus         3 ~L~~L~l~~n~i~   15 (24)
T PF13516_consen    3 NLETLDLSNNQIT   15 (24)
T ss_dssp             T-SEEE-TSSBEH
T ss_pred             CCCEEEccCCcCC
Confidence            4455555555544

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=89.97  E-value=0.13  Score=39.96  Aligned_cols=160  Identities=16%  Similarity=0.076  Sum_probs=76.3

Q ss_pred             cccEEecCCCc-cCCC-CCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEcccccc-Cccchh-hhhcc
Q 037699           10 HLVFLDLSLNN-FQGP-IPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNL-EGKIAT-SFGRL   85 (203)
Q Consensus        10 ~L~~L~l~~~~-~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~~~~-~~~~l   85 (203)
                      .+.++++.+|. ++++ ....-..+..|+.+..+++...+....+.   .-....+|+.+.+..|.. ++.-.. .-.+.
T Consensus       269 ~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~a---Lg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~  345 (483)
T KOG4341|consen  269 EILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWA---LGQHCHNLQVLELSGCQQFSDRGFTMLGRNC  345 (483)
T ss_pred             HhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHH---HhcCCCceEEEeccccchhhhhhhhhhhcCC
Confidence            34455555553 3322 11222346677777777764222221111   123456788888777652 211111 12345


Q ss_pred             CCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhh----ccCCCccEEEcc
Q 037699           86 CKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHF----AKLSKLKYFDVS  161 (203)
Q Consensus        86 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l----~~~~~L~~L~l~  161 (203)
                      +.|+.+++..+......  .+..              .+.+++.|+.+.++++....+.....+    .....++.+.++
T Consensus       346 ~~Le~l~~e~~~~~~d~--tL~s--------------ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~  409 (483)
T KOG4341|consen  346 PHLERLDLEECGLITDG--TLAS--------------LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELD  409 (483)
T ss_pred             hhhhhhcccccceehhh--hHhh--------------hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeec
Confidence            56666666655432211  0110              011566677777776644322111111    234556667777


Q ss_pred             CCcccc-ccCCCCCCCCCccEEEcCCCC
Q 037699          162 QNSLTL-NVSPDWIPPFQLKELNLESCN  188 (203)
Q Consensus       162 ~n~~~~-~~~~~l~~~~~L~~L~l~~n~  188 (203)
                      ++.... ...+-+..++.|+.+++.++.
T Consensus       410 n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  410 NCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             CCCCchHHHHHHHhhCcccceeeeechh
Confidence            765442 223345556666666666654

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=88.70  E-value=0.37  Score=21.67  Aligned_cols=18  Identities=39%  Similarity=0.573  Sum_probs=13.5

Q ss_pred             CCccEEEcCCCCCCCCCCch
Q 037699          177 FQLKELNLESCNLVGNRFPS  196 (203)
Q Consensus       177 ~~L~~L~l~~n~l~~~~~p~  196 (203)
                      ++|++|++++|++  .++|+
T Consensus         2 ~~L~~L~vs~N~L--t~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQL--TSLPE   19 (26)
T ss_pred             cccceeecCCCcc--ccCcc
Confidence            3678888888888  66776

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=88.46  E-value=0.26  Score=38.46  Aligned_cols=76  Identities=16%  Similarity=0.169  Sum_probs=43.2

Q ss_pred             cCCCCCEEEccCCcccccc-chhhhccCCCccEEEccCCcccccc-C----CCCCCCCCccEEEcCCCCCCCCCCchhhh
Q 037699          126 QLSSLDSVNLSNNTLFGSL-FEIHFAKLSKLKYFDVSQNSLTLNV-S----PDWIPPFQLKELNLESCNLVGNRFPSWLL  199 (203)
Q Consensus       126 ~~~~L~~L~l~~n~l~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~-~----~~l~~~~~L~~L~l~~n~l~~~~~p~~~~  199 (203)
                      +.+.|+.+++.++....+. ....-.+++.++.+.++.|...... .    ..-.....|..+-+++++...+.....+.
T Consensus       344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~  423 (483)
T KOG4341|consen  344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS  423 (483)
T ss_pred             CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh
Confidence            5567777777666442111 2223457788888888877543211 1    11233446788888888765555444444


Q ss_pred             cc
Q 037699          200 SQ  201 (203)
Q Consensus       200 ~~  201 (203)
                      .+
T Consensus       424 ~c  425 (483)
T KOG4341|consen  424 IC  425 (483)
T ss_pred             hC
Confidence            44

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=87.61  E-value=0.011  Score=47.33  Aligned_cols=40  Identities=23%  Similarity=0.251  Sum_probs=29.6

Q ss_pred             CCCCEEEccCCccccccch---hhhccCCCccEEEccCCcccc
Q 037699          128 SSLDSVNLSNNTLFGSLFE---IHFAKLSKLKYFDVSQNSLTL  167 (203)
Q Consensus       128 ~~L~~L~l~~n~l~~~~~~---~~l~~~~~L~~L~l~~n~~~~  167 (203)
                      ..++.++++.|.+.+....   ..+..++.++.+.++.|.+..
T Consensus       262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            5678999999988754322   245567789999999998864

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=86.33  E-value=0.58  Score=21.34  Aligned_cols=13  Identities=38%  Similarity=0.539  Sum_probs=10.2

Q ss_pred             CCccEEEcCCCCC
Q 037699          177 FQLKELNLESCNL  189 (203)
Q Consensus       177 ~~L~~L~l~~n~l  189 (203)
                      ++|++|+|++|.|
T Consensus         2 ~~L~~LdL~~N~i   14 (28)
T smart00368        2 PSLRELDLSNNKL   14 (28)
T ss_pred             CccCEEECCCCCC
Confidence            4678888888887

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=84.62  E-value=0.92  Score=20.38  Aligned_cols=14  Identities=36%  Similarity=0.596  Sum_probs=8.1

Q ss_pred             CCccEEEccCCccc
Q 037699          153 SKLKYFDVSQNSLT  166 (203)
Q Consensus       153 ~~L~~L~l~~n~~~  166 (203)
                      .+|+.|+++.|+|+
T Consensus         2 ~~L~~L~L~~NkI~   15 (26)
T smart00365        2 TNLEELDLSQNKIK   15 (26)
T ss_pred             CccCEEECCCCccc
Confidence            34566666666654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	203
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-07
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-07

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 11  LVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLS 70
           ++FLD+S N   G IP+ +G++  L  L+L  N      +SG+    VG+L  +  LDLS
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN-----DISGSIPDEVGDLRGLNILDLS 688
Query: 71  FNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKI 105
            N L+G+I  +   L  L  + LS++N++  I ++
Sbjct: 689 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 11  LVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLS 70
           ++FLD+S N   G IP+ +G++  L  L+L  N      +SG+    VG+L  +  LDLS
Sbjct: 631 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN-----DISGSIPDEVGDLRGLNILDLS 685
Query: 71  FNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKI 105
            N L+G+I  +   L  L  + LS++N++  I ++
Sbjct: 686 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	203
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-16
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-22
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-22
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-17
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-13
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-17
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-16
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-15
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-17
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-14
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	8e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  102 bits (257), Expect = 1e-25
 Identities = 50/205 (24%), Positives = 78/205 (38%), Gaps = 30/205 (14%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNL 61
           P++   S  L  LD+S N   G   R +   T L+ L++S+N        G        L
Sbjct: 217 PFLGDCS-ALQHLDISGNKLSGDFSRAISTCTELKLLNISSN-----QFVGPIPPL--PL 268

Query: 62  TSIQTLDLSFNNLEGKIATS-FGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVL 120
            S+Q L L+ N   G+I     G    L  + LS ++    +                  
Sbjct: 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF-------------- 314

Query: 121 EMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWI--PPFQ 178
                  S L+S+ LS+N   G L      K+  LK  D+S N  +  + P+ +      
Sbjct: 315 ----GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL-PESLTNLSAS 369

Query: 179 LKELNLESCNLVGNRFPSWLLSQKS 203
           L  L+L S N  G   P+   + K+
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKN 394

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  100 bits (252), Expect = 6e-25
 Identities = 43/199 (21%), Positives = 72/199 (36%), Gaps = 38/199 (19%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDL 69
            L  L +S N   G +   +    +L +LD+S+N       S      +G+ +++Q LD+
Sbjct: 179 ELKHLAISGNKISGDVD--VSRCVNLEFLDVSSN-----NFSTGIPF-LGDCSALQHLDI 230

Query: 70  SFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSS 129
           S N L G  + +     +L+ + +S +     I                        L S
Sbjct: 231 SGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP--------------------PLPLKS 270

Query: 130 LDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPF-----QLKELNL 184
           L  ++L+ N   G + +        L   D+S N          +PPF      L+ L L
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY-----GAVPPFFGSCSLLESLAL 325

Query: 185 ESCNLVGNRFPSWLLSQKS 203
            S N  G      LL  + 
Sbjct: 326 SSNNFSGELPMDTLLKMRG 344

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 96.5 bits (241), Expect = 2e-23
 Identities = 58/210 (27%), Positives = 91/210 (43%), Gaps = 23/210 (10%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTF-SSSVGN 60
            ++ G  D L  LDLS N+F G +P   G+ + L  L LS+N       SG     ++  
Sbjct: 287 DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN-----NFSGELPMDTLLK 341

Query: 61  LTSIQTLDLSFNNLEGKIATSFGRLC-KLRSVFLSHSNMNQEISKILNIFSTCILDGLEV 119
           +  ++ LDLSFN   G++  S   L   L ++ LS +N +  I   L        + L+ 
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL---CQNPKNTLQE 398

Query: 120 LEMTE-----------WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLN 168
           L +                S L S++LS N L G++       LSKL+   +  N L   
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS-SLGSLSKLRDLKLWLNMLEGE 457

Query: 169 VSPDWIPPFQLKELNLESCNLVGNRFPSWL 198
           +  + +    L+ L L+  +L G   PS L
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGE-IPSGL 486

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 94.6 bits (236), Expect = 6e-23
 Identities = 51/200 (25%), Positives = 82/200 (41%), Gaps = 27/200 (13%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDL 69
            L  L L  N F G IP  L N + L  L LS N     YLSGT  SS+G+L+ ++ L L
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN-----YLSGTIPSSLGSLSKLRDLKL 449

Query: 70  SFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTE----- 124
             N LEG+I      +  L ++ L  +++  EI   L          L  + ++      
Sbjct: 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL-----SNCTNLNWISLSNNRLTG 504

Query: 125 ------WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQ 178
                  +L +L  + LSNN+  G++          L + D++ N          IP   
Sbjct: 505 EIPKWIGRLENLAILKLSNNSFSGNIPA-ELGDCRSLIWLDLNTNLFNGT-----IPAAM 558

Query: 179 LKELNLESCNLVGNRFPSWL 198
            K+    + N +  +   ++
Sbjct: 559 FKQSGKIAANFIAGKRYVYI 578

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 93.4 bits (233), Expect = 2e-22
 Identities = 49/213 (23%), Positives = 90/213 (42%), Gaps = 32/213 (15%)

Query: 5   FGLSDHLVFLDLSLNNFQGPIP--RGLGNLTSLRYLDLSANISILQYLSGTFSSSVG-NL 61
           F  S  L  LDLS N+  GP+     LG+ + L++L++S+N      L      S G  L
Sbjct: 96  FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSN-----TLDFPGKVSGGLKL 150

Query: 62  TSIQTLDLSFNNLEGKIATSF---GRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLE 118
            S++ LDLS N++ G     +       +L+ + +S + ++ ++  +           LE
Sbjct: 151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSR------CVNLE 203

Query: 119 VLEMTE----------WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLN 168
            L+++              S+L  +++S N L G       +  ++LK  ++S N     
Sbjct: 204 FLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR-AISTCTELKLLNISSNQFVGP 262

Query: 169 VSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQ 201
           + P  +    L+ L+L      G   P +L   
Sbjct: 263 IPPLPLK--SLQYLSLAENKFTGE-IPDFLSGA 292

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 90.0 bits (224), Expect = 3e-21
 Identities = 41/195 (21%), Positives = 69/195 (35%), Gaps = 10/195 (5%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNL 61
           P        L  L L  N+  G IP GL N T+L ++ LS N      L+G     +G L
Sbjct: 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN-----RLTGEIPKWIGRL 513

Query: 62  TSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMN----QEISKILNIFSTCILDGL 117
            ++  L LS N+  G I    G    L  + L+ +  N      + K     +   + G 
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573

Query: 118 EVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPF 177
             + +    +        +     G   E    +LS     +++      + SP +    
Sbjct: 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSE-QLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632

Query: 178 QLKELNLESCNLVGN 192
            +  L++    L G 
Sbjct: 633 SMMFLDMSYNMLSGY 647

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 82.3 bits (204), Expect = 1e-18
 Identities = 48/219 (21%), Positives = 88/219 (40%), Gaps = 42/219 (19%)

Query: 8   SDHLVFLDLS---LNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSI 64
            D +  +DLS   LN     +   L +LT L  L LS +     +++G+  S      S+
Sbjct: 49  DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNS-----HINGSV-SGFKCSASL 102

Query: 65  QTLDLSFNNLEGKI--ATSFGRLCKLRSVFLSHSNMNQEIS----------KIL----NI 108
            +LDLS N+L G +   TS G    L+ + +S + ++              ++L    N 
Sbjct: 103 TSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162

Query: 109 FSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLN 168
            S   + G  + +        L  + +S N + G    +  ++   L++ DVS N+ +  
Sbjct: 163 ISGANVVGWVLSDG----CGELKHLAISGNKISGD---VDVSRCVNLEFLDVSSNNFS-- 213

Query: 169 VSPDWIPPF----QLKELNLESCNLVGNRFPSWLLSQKS 203
                IP       L+ L++    L G+ F   + +   
Sbjct: 214 ---TGIPFLGDCSALQHLDISGNKLSGD-FSRAISTCTE 248

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 81.9 bits (203), Expect = 2e-18
 Identities = 44/212 (20%), Positives = 70/212 (33%), Gaps = 45/212 (21%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNL 61
           P   G    L  L L LN  +G IP+ L  + +L  L L  N      L+G   S + N 
Sbjct: 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN-----DLTGEIPSGLSNC 489

Query: 62  TSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLE 121
           T++  + LS N L G+I    GRL  L  + LS+++ +  I   L               
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG-------------- 535

Query: 122 MTEWQLSSLDSVNLSNNTLFGSL-------------------FEIHFAKLSKLKYFDVSQ 162
                  SL  ++L+ N   G++                     ++       K    + 
Sbjct: 536 ----DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG 591

Query: 163 NSLTLNVSPDWIPPFQLKELNLESCNLVGNRF 194
           N L              +      CN+    +
Sbjct: 592 NLLEFQGI---RSEQLNRLSTRNPCNITSRVY 620

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 76.9 bits (190), Expect = 8e-17
 Identities = 30/143 (20%), Positives = 55/143 (38%), Gaps = 23/143 (16%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNL 61
                        +++   + G       N  S+ +LD+S N      LSG     +G++
Sbjct: 601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN-----MLSGYIPKEIGSM 655

Query: 62  TSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLE 121
             +  L+L  N++ G I    G L  L  + LS + ++  I + ++              
Sbjct: 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS-------------- 701

Query: 122 MTEWQLSSLDSVNLSNNTLFGSL 144
                L+ L  ++LSNN L G +
Sbjct: 702 ----ALTMLTEIDLSNNNLSGPI 720

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 75.3 bits (186), Expect = 3e-16
 Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 24/157 (15%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDL 69
                  +L  FQG     L  L++    ++++         G  S +  N  S+  LD+
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR-----VYGGHTSPTFDNNGSMMFLDM 639

Query: 70  SFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSS 129
           S+N L G I    G +  L  + L H++++  I   +                    L  
Sbjct: 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV------------------GDLRG 681

Query: 130 LDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT 166
           L+ ++LS+N L G + +   + L+ L   D+S N+L+
Sbjct: 682 LNILDLSSNKLDGRIPQ-AMSALTMLTEIDLSNNNLS 717

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 74.2 bits (183), Expect = 8e-16
 Identities = 37/165 (22%), Positives = 73/165 (44%), Gaps = 22/165 (13%)

Query: 31  NLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRS 90
               +  +DLS+    L       SSS+ +LT +++L LS +++ G ++  F     L S
Sbjct: 48  RDDKVTSIDLSSKP--LNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTS 104

Query: 91  VFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFA 150
           + LS ++++  ++ + ++                   S L  +N+S+NTL          
Sbjct: 105 LDLSRNSLSGPVTTLTSL----------------GSCSGLKFLNVSSNTLDFPGKVSGGL 148

Query: 151 KLSKLKYFDVSQNSLTLNVSPDWIPPF---QLKELNLESCNLVGN 192
           KL+ L+  D+S NS++      W+      +LK L +    + G+
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD 193

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 90.7 bits (226), Expect = 3e-22
 Identities = 45/194 (23%), Positives = 77/194 (39%), Gaps = 24/194 (12%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDL 69
            L +L ++  N  G IP  L  + +L  LD S N      LSGT   S+ +L ++  +  
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN-----ALSGTLPPSISSLPNLVGITF 156

Query: 70  SFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLE-------- 121
             N + G I  S+G   KL    ++ S  N+   KI   F+   L  +++          
Sbjct: 157 DGNRISGAIPDSYGSFSKL-FTSMTISR-NRLTGKIPPTFANLNLAFVDLSRNMLEGDAS 214

Query: 122 MTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKE 181
           +      +   ++L+ N+L   L ++       L   D+  N +   +      P  L +
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLGKV--GLSKNLNGLDLRNNRIYGTL------PQGLTQ 266

Query: 182 L-NLESCNLVGNRF 194
           L  L S N+  N  
Sbjct: 267 LKFLHSLNVSFNNL 280

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 90.3 bits (225), Expect = 5e-22
 Identities = 37/158 (23%), Positives = 69/158 (43%), Gaps = 27/158 (17%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSL-RYLDLSANISILQYLSGTFSSSVGNLTSIQTLD 68
           +LV +    N   G IP   G+ + L   + +S N      L+G    +  NL ++  +D
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN-----RLTGKIPPTFANL-NLAFVD 203

Query: 69  LSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLS 128
           LS N LEG  +  FG     + + L+ +++  ++ K+                       
Sbjct: 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL-------------------SK 244

Query: 129 SLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT 166
           +L+ ++L NN ++G+L +    +L  L   +VS N+L 
Sbjct: 245 NLNGLDLRNNRIYGTLPQ-GLTQLKFLHSLNVSFNNLC 281

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 77.6 bits (192), Expect = 2e-17
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 6/93 (6%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDL 69
           +L F+DLS N  +G      G+  + + + L+ N      L+      VG   ++  LDL
Sbjct: 198 NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN-----SLAFDLGK-VGLSKNLNGLDL 251

Query: 70  SFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEI 102
             N + G +     +L  L S+ +S +N+  EI
Sbjct: 252 RNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 76.8 bits (190), Expect = 4e-17
 Identities = 40/191 (20%), Positives = 74/191 (38%), Gaps = 29/191 (15%)

Query: 6   GLSDHLVFLDLSLNNFQG--PIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTS 63
             +  +  LDLS  N     PIP  L NL  L +L +    +    L G    ++  LT 
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN----LVGPIPPAIAKLTQ 102

Query: 64  IQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEI-SKILNIFSTCILDGLEVLEM 122
           +  L ++  N+ G I     ++  L ++  S++ ++  +   I +               
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS--------------- 147

Query: 123 TEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKL-KYFDVSQNSLTLNVSPDWIPPFQLKE 181
               L +L  +    N + G++ +  +   SKL     +S+N LT  + P       L  
Sbjct: 148 ----LPNLVGITFDGNRISGAIPD-SYGSFSKLFTSMTISRNRLTGKI-PPTFANLNLAF 201

Query: 182 LNLESCNLVGN 192
           ++L    L G+
Sbjct: 202 VDLSRNMLEGD 212

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 75.6 bits (187), Expect = 9e-17
 Identities = 34/143 (23%), Positives = 54/143 (37%), Gaps = 25/143 (17%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNL 61
                 S     + +S N   G IP    NL +L ++DLS N      L G  S   G+ 
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRN-----MLEGDASVLFGSD 220

Query: 62  TSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLE 121
            + Q + L+ N+L   +    G    L  + L ++ +   + + L               
Sbjct: 221 KNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLT-------------- 265

Query: 122 MTEWQLSSLDSVNLSNNTLFGSL 144
               QL  L S+N+S N L G +
Sbjct: 266 ----QLKFLHSLNVSFNNLCGEI 284

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 66.8 bits (164), Expect = 2e-13
 Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 29/157 (18%)

Query: 14  LDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTF--SSSVGNLTSIQTLDLS- 70
            D     + G +         +  LDLS        L   +   SS+ NL  +  L +  
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGL-----NLPKPYPIPSSLANLPYLNFLYIGG 85

Query: 71  FNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSL 130
            NNL G I  +  +L +L  ++++H+N++  I   L                   Q+ +L
Sbjct: 86  INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL------------------SQIKTL 127

Query: 131 DSVNLSNNTLFGSL-FEIHFAKLSKLKYFDVSQNSLT 166
            +++ S N L G+L   I  + L  L       N ++
Sbjct: 128 VTLDFSYNALSGTLPPSI--SSLPNLVGITFDGNRIS 162

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 52.9 bits (128), Expect = 1e-08
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 6/69 (8%)

Query: 5   FGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSI 64
            GLS +L  LDL  N   G +P+GL  L  L  L++S N      L G      GNL   
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN-----NLCGEIPQG-GNLQRF 293

Query: 65  QTLDLSFNN 73
                + N 
Sbjct: 294 DVSAYANNK 302

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 85.4 bits (212), Expect = 1e-19
 Identities = 39/204 (19%), Positives = 72/204 (35%), Gaps = 18/204 (8%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQY----LSGTFSSS 57
              F     L +  L  NN Q      L  L ++RYL+L  + +        L      S
Sbjct: 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324

Query: 58  VGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGL 117
              L  ++ L++  N++ G  +  F  L  L+ + LS+ +     +     F +     L
Sbjct: 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN-SFTSLRTLTNETFVSLAHSPL 383

Query: 118 EVLEMTE-----------WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT 166
            +L +T+             L  L+ ++L  N +   L    +  L  +    +S N   
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443

Query: 167 LNVSPDWIPPF-QLKELNLESCNL 189
             ++ +       L+ L L    L
Sbjct: 444 -QLTRNSFALVPSLQRLMLRRVAL 466

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 79.3 bits (196), Expect = 1e-17
 Identities = 37/201 (18%), Positives = 71/201 (35%), Gaps = 17/201 (8%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNL 61
              F     L  LD+  N      P     L  L+ L+L  N      LS     +    
Sbjct: 42  AANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-----ELSQLSDKTFAFC 96

Query: 62  TSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILN--------IFSTCI 113
           T++  L L  N+++      F +   L ++ LSH+ ++                + S   
Sbjct: 97  TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK 156

Query: 114 LDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDW 173
           +  L+  E+  +  SSL  + LS+N +        F  + +L    ++   L  +++   
Sbjct: 157 IQALKSEELDIFANSSLKKLELSSNQI-KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKL 215

Query: 174 IPPF---QLKELNLESCNLVG 191
                   ++ L+L +  L  
Sbjct: 216 CLELANTSIRNLSLSNSQLST 236

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.8 bits (187), Expect = 2e-16
 Identities = 42/196 (21%), Positives = 78/196 (39%), Gaps = 19/196 (9%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNL 61
              F    +L+ LDLS N            L +L+ L LS N  I    S          
Sbjct: 114 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDI--FAN 170

Query: 62  TSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLE 121
           +S++ L+LS N ++      F  + +L  +FL++  +   +++   +        +  L 
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE--KLCLELANTSIRNLS 228

Query: 122 MTE-------------WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLN 168
           ++               + ++L  ++LS N L     +  FA L +L+YF +  N++   
Sbjct: 229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS-FAWLPQLEYFFLEYNNIQHL 287

Query: 169 VSPDWIPPFQLKELNL 184
            S      F ++ LNL
Sbjct: 288 FSHSLHGLFNVRYLNL 303

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.8 bits (187), Expect = 2e-16
 Identities = 33/189 (17%), Positives = 66/189 (34%), Gaps = 28/189 (14%)

Query: 6   GLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQ 65
            L  ++  L+L+ N  +          + L  LD+  N      +S         L  ++
Sbjct: 22  DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-----TISKLEPELCQKLPMLK 76

Query: 66  TLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEW 125
            L+L  N L      +F     L  + L  +++ +  +                      
Sbjct: 77  VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFV------------------ 118

Query: 126 QLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPF---QLKEL 182
           +  +L +++LS+N L  S       +L  L+   +S N +   +  + +  F    LK+L
Sbjct: 119 KQKNLITLDLSHNGLS-STKLGTQVQLENLQELLLSNNKIQ-ALKSEELDIFANSSLKKL 176

Query: 183 NLESCNLVG 191
            L S  +  
Sbjct: 177 ELSSNQIKE 185

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 75.0 bits (185), Expect = 4e-16
 Identities = 42/219 (19%), Positives = 72/219 (32%), Gaps = 28/219 (12%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGN 60
              +   +++  + LS N +          + SL+ L L    +  +      F      
Sbjct: 423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF----QP 478

Query: 61  LTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVL 120
           L ++  LDLS NN+          L KL  + L H+N+ +             L GL  L
Sbjct: 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 538

Query: 121 EM--------------TEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT 166
            +                  L  L  ++L  N L      + F     LK  ++ +N +T
Sbjct: 539 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV-FNNQVSLKSLNLQKNLIT 597

Query: 167 LNVSPDWIPPF--QLKELNLESCNLVGN-----RFPSWL 198
            +V      P    L EL++              F +W+
Sbjct: 598 -SVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWI 635

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 74.3 bits (183), Expect = 7e-16
 Identities = 38/169 (22%), Positives = 58/169 (34%), Gaps = 21/169 (12%)

Query: 1   MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQ--YLSGTFSSS 57
            P  F    +L  LDLS NN        L  L  L  LDL  N ++ L      G     
Sbjct: 472 SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYF 531

Query: 58  VGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGL 117
           +  L+ +  L+L  N  +      F  L +L+ + L  +N+N   + + N          
Sbjct: 532 LKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN---------- 581

Query: 118 EVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT 166
                      SL S+NL  N +     ++       L   D+  N   
Sbjct: 582 --------NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 71.6 bits (176), Expect = 6e-15
 Identities = 39/197 (19%), Positives = 64/197 (32%), Gaps = 31/197 (15%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNL 61
              F    +L  L L  N+ Q           +L  LDLS N      LS T   +   L
Sbjct: 90  DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-----GLSSTKLGTQVQL 144

Query: 62  TSIQTLDLSFNNLEGKIATSFGRLC--KLRSVFLSHSNMNQEISKILNIFSTCILDGLEV 119
            ++Q L LS N ++   +          L+ + LS + + +      +            
Sbjct: 145 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH------------ 192

Query: 120 LEMTEWQLSSLDSVNLSNNTLFGSLFEIHFA--KLSKLKYFDVSQNSLTLNVSPDWI--- 174
                  +  L  + L+N  L  SL E        + ++   +S + L+   S       
Sbjct: 193 ------AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS-TTSNTTFLGL 245

Query: 175 PPFQLKELNLESCNLVG 191
               L  L+L   NL  
Sbjct: 246 KWTNLTMLDLSYNNLNV 262

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 70.4 bits (173), Expect = 1e-14
 Identities = 42/188 (22%), Positives = 66/188 (35%), Gaps = 21/188 (11%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNL--TSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTL 67
            +  L LS +            L  T+L  LDLS N      L+   + S   L  ++  
Sbjct: 223 SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN-----NLNVVGNDSFAWLPQLEYF 277

Query: 68  DLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQL 127
            L +NN++   + S   L  +R + L  S   Q IS  L                    L
Sbjct: 278 FLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS--LASLPKIDDFSF-------QWL 328

Query: 128 SSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWI----PPFQLKELN 183
             L+ +N+ +N + G +    F  L  LKY  +S +  +L    +          L  LN
Sbjct: 329 KCLEHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 387

Query: 184 LESCNLVG 191
           L    +  
Sbjct: 388 LTKNKISK 395

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.2 bits (123), Expect = 6e-08
 Identities = 31/176 (17%), Positives = 62/176 (35%), Gaps = 37/176 (21%)

Query: 33  TSLRYLDLS------------ANISILQ----YLSGTFSSSVGNLTSIQTLDLSFNNLEG 76
            S    D S             NI++L      L    +++    + + +LD+ FN +  
Sbjct: 4   VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 77  KIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLS 136
                  +L  L+ + L H+ ++Q   K                       ++L  ++L 
Sbjct: 64  LEPELCQKLPMLKVLNLQHNELSQLSDKTFA------------------FCTNLTELHLM 105

Query: 137 NNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQ-LKELNLESCNLVG 191
           +N++   +    F K   L   D+S N L+ +         + L+EL L +  +  
Sbjct: 106 SNSIQ-KIKNNPFVKQKNLITLDLSHNGLS-STKLGTQVQLENLQELLLSNNKIQA 159

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 82.2 bits (203), Expect = 1e-18
 Identities = 32/210 (15%), Positives = 64/210 (30%), Gaps = 23/210 (10%)

Query: 1   MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN----ISILQYLSGTFSS 56
               +     L  ++L        +P  L +L  L+ L+++ N     + L+      + 
Sbjct: 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLAD 542

Query: 57  SVGNLTSIQTLDLSFNNLEG-KIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILD 115
                  IQ   + +NNLE    + S  ++ KL  +   H N  + +             
Sbjct: 543 DEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVH-NKVRHLEAFGT------NV 595

Query: 116 GLEVLEMTE-----------WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNS 164
            L  L++                  ++ +  S+N L       +   +  +   D S N 
Sbjct: 596 KLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNK 655

Query: 165 LTLNVSPDWIPPFQLKELNLESCNLVGNRF 194
           +              K +N  +  L  N  
Sbjct: 656 IGSEGRNISCSMDDYKGINASTVTLSYNEI 685

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 75.3 bits (185), Expect = 4e-16
 Identities = 28/192 (14%), Positives = 57/192 (29%), Gaps = 33/192 (17%)

Query: 16  LSLNNFQGPIPRGLGNLTSLRYLDLSAN--------------ISILQYLSGTFSSSVGNL 61
            +L N    I + +  LT L+ +  + +               S           S  NL
Sbjct: 431 GNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL 490

Query: 62  TSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLE 121
             +  ++L       ++      L +L+S+ ++  N     +++              L 
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC-NRGISAAQLKA--------DWTRLA 541

Query: 122 MTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPF---- 177
             E     +    +  N L          K+ KL   D   N +        +  F    
Sbjct: 542 DDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH------LEAFGTNV 595

Query: 178 QLKELNLESCNL 189
           +L +L L+   +
Sbjct: 596 KLTDLKLDYNQI 607

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 74.9 bits (184), Expect = 5e-16
 Identities = 33/198 (16%), Positives = 63/198 (31%), Gaps = 20/198 (10%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQG-PIPRGLGNLTSLRYLDLSANISILQYLSGTFSS-SVG 59
                 +D +  L  S N  +  P      ++  +  +D S N  I         S    
Sbjct: 612 EDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYN-KIGSEGRNISCSMDDY 670

Query: 60  NLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEV 119
              +  T+ LS+N ++      F     + ++ LS+           N+ ++   + L+ 
Sbjct: 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSN-----------NLMTSIPENSLKP 719

Query: 120 LEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQL 179
            +        L +++L  N L     +     L  L   DVS N  +        P   L
Sbjct: 720 KDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS------SFPTQPL 773

Query: 180 KELNLESCNLVGNRFPSW 197
               L++  +   R    
Sbjct: 774 NSSQLKAFGIRHQRDAEG 791

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 68.7 bits (168), Expect = 5e-14
 Identities = 31/178 (17%), Positives = 55/178 (30%), Gaps = 20/178 (11%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN--ISILQYLSGTFSSSVGNLTSIQTL 67
           +   + LS N  Q          + +  + LS N   SI +        +  N   + T+
Sbjct: 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTI 733

Query: 68  DLSFNNLEGKIAT-SFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQ 126
           DL FN L           L  L ++ +S+   N       + F T  L+    L+     
Sbjct: 734 DLRFNKLTSLSDDFRATTLPYLSNMDVSY---NC-----FSSFPTQPLN-SSQLK----A 780

Query: 127 LSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNL 184
                  +   N +              L    +  N +      + + P QL  L++
Sbjct: 781 FGIRHQRDAEGNRILRQWPT-GITTCPSLIQLQIGSNDIR--KVDEKLTP-QLYILDI 834

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.5 bits (157), Expect = 2e-12
 Identities = 34/190 (17%), Positives = 60/190 (31%), Gaps = 28/190 (14%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQ-------GPIPRGLGNLTSLRYLDLSANISILQYLSGTF 54
             +F     +  + LS N           P      N   L  +DL  N   L  LS  F
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK--LTSLSDDF 747

Query: 55  SSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCIL 114
                 L  +  +D+S+N       T      +L++  + H   + E ++IL  + T I 
Sbjct: 748 R--ATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRH-QRDAEGNRILRQWPTGI- 802

Query: 115 DGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWI 174
                         SL  + + +N     + ++      +L   D++ N           
Sbjct: 803 ----------TTCPSLIQLQIGSN----DIRKVDEKLTPQLYILDIADNPNISIDVTSVC 848

Query: 175 PPFQLKELNL 184
           P  +     L
Sbjct: 849 PYIEAGMYVL 858

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.9 bits (145), Expect = 7e-11
 Identities = 22/183 (12%), Positives = 53/183 (28%), Gaps = 24/183 (13%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDL 69
            +  L L+    +G +P  +G LT L+ L    +       + +         +    + 
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTH-----SETVSGRLFGDEELTPDMSEE 378

Query: 70  SFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSS 129
             + +       F                  +   + ++    I    E+  + +    S
Sbjct: 379 RKHRIRMHYKKMFLDYD--------------QRLNLSDLLQDAINRNPEMKPIKKDSRIS 424

Query: 130 LDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNL 189
           L    + N T   +       +L+KL+    + +  T +           ++ N +    
Sbjct: 425 LKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYD-----NIAVDWEDANSDYAKQ 479

Query: 190 VGN 192
             N
Sbjct: 480 YEN 482

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.0 bits (127), Expect = 1e-08
 Identities = 29/225 (12%), Positives = 58/225 (25%), Gaps = 37/225 (16%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQGPIP-------------------------RGLGNLTSLR 36
           P   G    L  L    ++                                 L     L 
Sbjct: 340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN 399

Query: 37  YLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHS 96
             DL  +                       +    N +   I+ +  RL KL+ ++ ++S
Sbjct: 400 LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANS 458

Query: 97  NMNQEISKI-LNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKL 155
               +   +     ++      E  E++   L  L  V L N      L +     L +L
Sbjct: 459 PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPEL 517

Query: 156 KYFDVSQNSLT----LNVSPDWIPPF-----QLKELNLESCNLVG 191
           +  +++ N       L      +        +++   +   NL  
Sbjct: 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE 562

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.4 bits (110), Expect = 3e-06
 Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 11/91 (12%)

Query: 14  LDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSIQTLDLSFN 72
            D   N      P G+    SL  L + +N I  +                +  LD++ N
Sbjct: 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKV---------DEKLTPQLYILDIADN 837

Query: 73  NLEGKIATSFGRLCKLRSVFLSHSNMNQEIS 103
                  TS     +     L + +  Q+I 
Sbjct: 838 PNISIDVTSVCPYIEAGMYVLLY-DKTQDIR 867

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 17/138 (12%), Positives = 41/138 (29%), Gaps = 18/138 (13%)

Query: 57  SVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDG 116
            + N   +  L L+    +G++  + G+L +L+ +       + E           +   
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGT---HSETVSGRLFGDEEL--- 371

Query: 117 LEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPP 176
                       + D      + +     ++      +L   D+ Q+++  N     I  
Sbjct: 372 ------------TPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419

Query: 177 FQLKELNLESCNLVGNRF 194
                L       + NR 
Sbjct: 420 DSRISLKDTQIGNLTNRI 437

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 78.1 bits (193), Expect = 3e-17
 Identities = 34/189 (17%), Positives = 69/189 (36%), Gaps = 24/189 (12%)

Query: 6   GLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQ 65
            L      LDLS N  +        +   L+ LDLS        +      +  +L+ + 
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-----EIQTIEDGAYQSLSHLS 79

Query: 66  TLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEW 125
           TL L+ N ++     +F  L  L+ +    +N+    +  +                   
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG------------------ 121

Query: 126 QLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLE 185
            L +L  +N+++N +       +F+ L+ L++ D+S N +  ++    +       L   
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNL 180

Query: 186 SCNLVGNRF 194
           S +L  N  
Sbjct: 181 SLDLSLNPM 189

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 74.7 bits (184), Expect = 5e-16
 Identities = 35/165 (21%), Positives = 62/165 (37%), Gaps = 22/165 (13%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNL 61
             VF    +L++LD+S  + +         L+SL  L ++ N     +           L
Sbjct: 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN----SFQENFLPDIFTEL 469

Query: 62  TSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLE 121
            ++  LDLS   LE    T+F  L  L+ + +SH+N     +                  
Sbjct: 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK-------------- 515

Query: 122 MTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT 166
                L+SL  ++ S N +  S  +      S L + +++QN   
Sbjct: 516 ----CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 72.8 bits (179), Expect = 2e-15
 Identities = 39/203 (19%), Positives = 73/203 (35%), Gaps = 28/203 (13%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNL 61
            + F     L  LDLS    Q        +L+ L  L L+ N      +      +   L
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-----PIQSLALGAFSGL 99

Query: 62  TSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLE 121
           +S+Q L     NL        G L  L+ + ++H+ +     K+   FS           
Sbjct: 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS--FKLPEYFS----------- 146

Query: 122 MTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYF----DVSQNSLTLNVSPDWIPPF 177
                L++L+ ++LS+N +   ++      L ++       D+S N +   + P      
Sbjct: 147 ----NLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI 200

Query: 178 QLKELNLESCNLVGNRFPSWLLS 200
           +L +L L +     N   + +  
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQG 223

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 70.8 bits (174), Expect = 1e-14
 Identities = 46/210 (21%), Positives = 74/210 (35%), Gaps = 33/210 (15%)

Query: 1   MPWVFGLSDHLVFLDLSLNNFQGPIPRG-LGNLTSLRYLDLSANISILQYLSGTFSSSVG 59
           M   F   + L  LD   +N +         +L +L YLD+S       +    F+    
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-----HTRVAFNGIFN 442

Query: 60  NLTSIQTLDLSFNNLEGKI-ATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLE 118
            L+S++ L ++ N+ +       F  L  L  + LS   + Q      N           
Sbjct: 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN----------- 491

Query: 119 VLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPF- 177
                   LSSL  +N+S+N  F       +  L+ L+  D S N +        +  F 
Sbjct: 492 -------SLSSLQVLNMSHNNFFSLDTFP-YKCLNSLQVLDYSLNHIM-TSKKQELQHFP 542

Query: 178 -QLKELNLE----SCNLVGNRFPSWLLSQK 202
             L  LNL     +C      F  W+  Q+
Sbjct: 543 SSLAFLNLTQNDFACTCEHQSFLQWIKDQR 572

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 60.8 bits (148), Expect = 3e-11
 Identities = 34/213 (15%), Positives = 63/213 (29%), Gaps = 37/213 (17%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN--------------ISIL 47
             +F    ++    L     +             ++L+L                     
Sbjct: 275 IDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF 332

Query: 48  QYLSGTFSSSVGNLTSIQTLDLSFNNL--EGKIATSFGRLCKLRSVFLSHSNMNQEISKI 105
               G  + S  +L S++ LDLS N L  +G  + S      L+ + LS + +    S  
Sbjct: 333 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF 392

Query: 106 LNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSL 165
           L                    L  L+ ++  ++ L        F  L  L Y D+S    
Sbjct: 393 LG-------------------LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 166 TLNVSPDWIPPFQLKELNLESCNLVGNRFPSWL 198
            +  +  +     L+ L +   +   N  P   
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.7 bits (140), Expect = 3e-10
 Identities = 42/211 (19%), Positives = 72/211 (34%), Gaps = 13/211 (6%)

Query: 1   MPWVFGLSDHLVFLDLSLNNFQG------PIPRGLGNLTSLRYLDLSANISILQYLSGTF 54
           M         L    L L  F+            L  L +L   +    ++ L Y     
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF--RLAYLDYYLDDI 274

Query: 55  SSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCIL 114
                 LT++ +  L    +E      F      + + L +    Q  +  L        
Sbjct: 275 IDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF 332

Query: 115 DGLEVLEM-TEWQLSSLDSVNLSNNTL-FGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPD 172
              +     +E  L SL+ ++LS N L F           + LKY D+S N +   +S +
Sbjct: 333 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN 391

Query: 173 WIPPFQLKELNLESCNLVGNRFPSWLLSQKS 203
           ++   QL+ L+ +  NL      S  LS ++
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 28/166 (16%), Positives = 54/166 (32%), Gaps = 29/166 (17%)

Query: 7   LSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQT 66
           +    + LDLSLN     I  G      L  L L  N   L  +          L  ++ 
Sbjct: 175 MPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ----GLAGLEV 229

Query: 67  LDLS------FNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVL 120
             L         NLE    ++   LC L       + ++  +  I+++F+          
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN---------- 279

Query: 121 EMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT 166
                 L+++ S +L + T+        F+     ++ ++      
Sbjct: 280 -----CLTNVSSFSLVSVTIERV---KDFSYNFGWQHLELVNCKFG 317

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 21/138 (15%)

Query: 62  TSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLE 121
            S + LDLSFN L    + SF    +L+ + LS   +                       
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY--------------- 72

Query: 122 MTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPF-QLK 180
                LS L ++ L+ N +   L    F+ LS L+     + +L  ++    I     LK
Sbjct: 73  ---QSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLK 127

Query: 181 ELNLESCNLVGNRFPSWL 198
           ELN+    +   + P + 
Sbjct: 128 ELNVAHNLIQSFKLPEYF 145

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 77.0 bits (190), Expect = 8e-17
 Identities = 27/168 (16%), Positives = 55/168 (32%), Gaps = 14/168 (8%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQG-PIPRGLGNLTSLRYLDLSAN--ISILQYLSGTFSSSV 58
               G ++ +  L  + N  +  P      +++ +  +D S N   S+          + 
Sbjct: 370 ANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429

Query: 59  GNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLE 118
               ++ +++LS N +       F     L S+ L  + + +     L   +        
Sbjct: 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF----- 484

Query: 119 VLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT 166
                      L S++L  N L     +     L  L   D+S NS +
Sbjct: 485 ------KNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFS 526

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 73.5 bits (181), Expect = 1e-15
 Identities = 30/202 (14%), Positives = 70/202 (34%), Gaps = 23/202 (11%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN---ISILQYLSGTFSSSVGNLTSIQT 66
            L  +++        +P  L  L  ++ ++++ N               +       IQ 
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309

Query: 67  LDLSFNNL-EGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEM--- 122
           + + +NNL    + TS  ++ KL  +   ++ +  ++    +         L  L +   
Sbjct: 310 IYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGS------EIKLASLNLAYN 363

Query: 123 --------TEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT--LNVSPD 172
                          +++++ ++N L           +S +   D S N +      + D
Sbjct: 364 QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423

Query: 173 WIPPFQLKELNLESCNLVGNRF 194
            + P   K +N+ S NL  N+ 
Sbjct: 424 PLDPTPFKGINVSSINLSNNQI 445

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.1 bits (172), Expect = 2e-14
 Identities = 31/205 (15%), Positives = 60/205 (29%), Gaps = 34/205 (16%)

Query: 5   FGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN------------ISILQYLS- 51
             ++     +    NN    + + +  LT LR   +  +                +Y   
Sbjct: 179 SRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ 237

Query: 52  -GTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFS 110
             T      NL  +  +++       K+ T    L +++ + ++    N+ IS       
Sbjct: 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC---NRGISGEQLKDD 294

Query: 111 TCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVS 170
              L               +  + +  N L     E    K+ KL   +   N L     
Sbjct: 295 WQALADAP-------VGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE---- 343

Query: 171 PDWIPPF----QLKELNLESCNLVG 191
              +P F    +L  LNL    +  
Sbjct: 344 -GKLPAFGSEIKLASLNLAYNQITE 367

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 66.2 bits (162), Expect = 4e-13
 Identities = 24/197 (12%), Positives = 61/197 (30%), Gaps = 17/197 (8%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDL 69
            +  L L      G +P  +G LT L  L L ++              +    S +    
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSH-GEKVNERLFGPKGISANMSDEQKQK 140

Query: 70  SFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILD--------GLEVLE 121
              + +        R      +    ++ + +   I       + D         +  + 
Sbjct: 141 MRMHYQKTFVDYDPREDFSDLIKDCINS-DPQQKSIKKSSRITLKDTQIGQLSNNITFVS 199

Query: 122 MTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKE 181
               +L+ L    + N+            +  + +  + +Q   T ++  D +    L +
Sbjct: 200 KAVMRLTKLRQFYMGNSPFVAENIC----EAWENENSEYAQQYKTEDLKWDNLK--DLTD 253

Query: 182 LNLESCNLVGNRFPSWL 198
           + + +C  +  + P++L
Sbjct: 254 VEVYNCPNLT-KLPTFL 269

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 66.2 bits (162), Expect = 4e-13
 Identities = 28/194 (14%), Positives = 56/194 (28%), Gaps = 20/194 (10%)

Query: 1   MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN--ISILQYLSGTFSSSV 58
           +        ++  ++LS N             + L  ++L  N    I +      + + 
Sbjct: 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF 484

Query: 59  GNLTSIQTLDLSFNNLEGKIAT-SFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGL 117
            N   + ++DL FN L           L  L  + LS+   N   SK            L
Sbjct: 485 KNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSY---NS-FSKFPTQPLNSS--TL 538

Query: 118 EVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPF 177
           +   +        +  +   N       E        L    +  N +      + I P 
Sbjct: 539 KGFGI-------RNQRDAQGNRTLREWPE-GITLCPSLTQLQIGSNDIR--KVNEKITP- 587

Query: 178 QLKELNLESCNLVG 191
            +  L+++    + 
Sbjct: 588 NISVLDIKDNPNIS 601

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.8 bits (122), Expect = 8e-08
 Identities = 15/95 (15%), Positives = 28/95 (29%), Gaps = 9/95 (9%)

Query: 9   DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLD 68
                 D   N      P G+    SL  L + +N   ++ ++           +I  LD
Sbjct: 542 GIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN--DIRKVNEKI------TPNISVLD 593

Query: 69  LSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEIS 103
           +  N       +      +     L +    Q+I 
Sbjct: 594 IKDNPNISIDLSYVCPYIEAGMYMLFYDK-TQDIR 627

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 18/162 (11%), Positives = 46/162 (28%), Gaps = 24/162 (14%)

Query: 57  SVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSH------------SNMNQEISK 104
           S+ +   +  L L      G++  + G+L +L  + L                ++  +S 
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135

Query: 105 ILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNS 164
                         V        S L    ++++    S+ +       K        N+
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI-KKSSRITLKDTQIGQLSNN 194

Query: 165 LTLNVSPDWIPPF-----QLKELNLESCNLVGNRFPSWLLSQ 201
           +T       +        +L++  + +   V         ++
Sbjct: 195 ITF------VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE 230

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 72.4 bits (178), Expect = 3e-15
 Identities = 32/189 (16%), Positives = 68/189 (35%), Gaps = 24/189 (12%)

Query: 6   GLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQ 65
            +      +DLS N  +        N + L++LDLS        +      +   L  + 
Sbjct: 29  DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-----EIETIEDKAWHGLHHLS 83

Query: 66  TLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEW 125
            L L+ N ++     SF  L  L ++    + +    S  +                   
Sbjct: 84  NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIG------------------ 125

Query: 126 QLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLE 185
           QL +L  +N+++N +       +F+ L+ L + D+S N +   ++ + +   +       
Sbjct: 126 QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ-TITVNDLQFLRENPQVNL 184

Query: 186 SCNLVGNRF 194
           S ++  N  
Sbjct: 185 SLDMSLNPI 193

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 70.8 bits (174), Expect = 9e-15
 Identities = 41/165 (24%), Positives = 67/165 (40%), Gaps = 23/165 (13%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNL 61
              F   + L++LD+S  N +         LTSL  L ++ N     +   T S+   N 
Sbjct: 417 FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN----SFKDNTLSNVFANT 472

Query: 62  TSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLE 121
           T++  LDLS   LE      F  L +L+ + +SH+N+    S   N              
Sbjct: 473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN-------------- 518

Query: 122 MTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT 166
               QL SL +++ S N    +   I       L +F+++ NS+ 
Sbjct: 519 ----QLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 66.6 bits (163), Expect = 3e-13
 Identities = 45/210 (21%), Positives = 69/210 (32%), Gaps = 34/210 (16%)

Query: 1   MPWVFGLSDHLVFLDLSLNNFQGPIPRG-LGNLTSLRYLDLSANISILQYLSGTFSSSVG 59
           M   F   + L  LD   +  +         +L  L YLD+S            F     
Sbjct: 391 MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT-----NTKIDFDGIFL 445

Query: 60  NLTSIQTLDLSFNNLEGKI-ATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLE 118
            LTS+ TL ++ N+ +    +  F     L  + LS   + Q    + +           
Sbjct: 446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFD----------- 494

Query: 119 VLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQ 178
                   L  L  +N+S+N L   L   H+ +L  L   D S N +  +       P  
Sbjct: 495 -------TLHRLQLLNMSHNNLL-FLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKS 546

Query: 179 LKELNLES------CNLVGNRFPSWLLSQK 202
           L   NL +      C      F  W+  QK
Sbjct: 547 LAFFNLTNNSVACICEHQK--FLQWVKEQK 574

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 41/218 (18%), Positives = 77/218 (35%), Gaps = 31/218 (14%)

Query: 4   VFGLSDHLVFLDLSLNNFQG-PIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNL 61
             G    L  L+++ N      +P    NLT+L ++DLS N I  +            N 
Sbjct: 123 PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT--VNDLQFLRENP 180

Query: 62  TSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLE 121
               +LD+S N ++  I     +  KL  + L  +  +  I K         L GL V  
Sbjct: 181 QVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKT----CLQNLAGLHVHR 235

Query: 122 MTEWQLSSLDSVNLSNNTLFGSLFEIH------------------FAKLSKLKYFDVSQN 163
           +   +     ++ +   ++   L ++                   F  L+ +    ++  
Sbjct: 236 LILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV 295

Query: 164 SLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQ 201
           S+      D    F+ + L++  C L   +FP+  L  
Sbjct: 296 SIK--YLEDVPKHFKWQSLSIIRCQL--KQFPTLDLPF 329

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.0 bits (146), Expect = 6e-11
 Identities = 33/206 (16%), Positives = 66/206 (32%), Gaps = 23/206 (11%)

Query: 14  LDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSV-------------G 59
             L+  N           L ++  + L+   I  L+ +   F                  
Sbjct: 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTL 325

Query: 60  NLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILD---- 115
           +L  +++L L+ N     I+     L  L  + LS + ++       +   T  L     
Sbjct: 326 DLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383

Query: 116 ---GLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPD 172
              G  ++      L  L  ++  ++TL        F  L KL Y D+S  +  ++    
Sbjct: 384 SFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI 443

Query: 173 WIPPFQLKELNLESCNLVGNRFPSWL 198
           ++    L  L +   +   N   +  
Sbjct: 444 FLGLTSLNTLKMAGNSFKDNTLSNVF 469

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 72.0 bits (177), Expect = 4e-15
 Identities = 44/190 (23%), Positives = 75/190 (39%), Gaps = 25/190 (13%)

Query: 5   FGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSI 64
            GLS  L  L LS N F+        N  SL +L +  N   L+  +G       NL ++
Sbjct: 298 VGLS-TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE----NLENL 352

Query: 65  QTLDLSFNNLE--GKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEM 122
           + LDLS +++E           L  L+S+ LS+   N+ +S     F             
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY---NEPLSLKTEAFK------------ 397

Query: 123 TEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKEL 182
              +   L+ ++L+   L     +  F  L  LK  ++S + L ++    +     L+ L
Sbjct: 398 ---ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL 454

Query: 183 NLESCNLVGN 192
           NL+  +    
Sbjct: 455 NLQGNHFPKG 464

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 69.3 bits (170), Expect = 3e-14
 Identities = 38/189 (20%), Positives = 66/189 (34%), Gaps = 27/189 (14%)

Query: 6   GLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQ 65
            L +    L+ S N            L +L +LDL+    I      TF     +   + 
Sbjct: 30  TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQ----SQHRLD 84

Query: 66  TLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEW 125
           TL L+ N L     T+      L+ +F   + ++      L+                  
Sbjct: 85  TLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLH------------------ 126

Query: 126 QLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLE 185
              +L+S+ L +N +  S+         KLK  D   N++   +S + +    L++    
Sbjct: 127 NQKTLESLYLGSNHI-SSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSS--LQQATNL 182

Query: 186 SCNLVGNRF 194
           S NL GN  
Sbjct: 183 SLNLNGNDI 191

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.9 bits (169), Expect = 5e-14
 Identities = 41/191 (21%), Positives = 73/191 (38%), Gaps = 19/191 (9%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDL 69
            +  ++L  + F           + L+ LDL+A      +LS    S +  L++++ L L
Sbjct: 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-----HLS-ELPSGLVGLSTLKKLVL 308

Query: 70  SFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEIS----------KILNIFSTCILDGLEV 119
           S N  E     S      L  + +  +    E+           + L++ S   ++  + 
Sbjct: 309 SANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL-SHDDIETSDC 367

Query: 120 LEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWI-PPFQ 178
             +    LS L S+NLS N    SL    F +  +L+  D++   L +  +         
Sbjct: 368 CNLQLRNLSHLQSLNLSYNEP-LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL 426

Query: 179 LKELNLESCNL 189
           LK LNL    L
Sbjct: 427 LKVLNLSHSLL 437

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.9 bits (169), Expect = 5e-14
 Identities = 28/201 (13%), Positives = 63/201 (31%), Gaps = 16/201 (7%)

Query: 4   VFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTS 63
            F     L  L L+ N         L    +L++L           +S      + N  +
Sbjct: 76  TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT-----GISSIDFIPLHNQKT 130

Query: 64  IQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGL------ 117
           +++L L  N++            KL+ +   ++ ++    + ++         L      
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190

Query: 118 -EVLEMTEWQLSSLDSVNLSNNTLFGSLFE-IHFAKLSKLKYFDVSQNSLTLNVSPDWIP 175
              +E   +  +   S+N         +F+ +  + +  L                    
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE---DISPAV 247

Query: 176 PFQLKELNLESCNLVGNRFPS 196
              L E+++ES NL  + F +
Sbjct: 248 FEGLCEMSVESINLQKHYFFN 268

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.8 bits (161), Expect = 5e-13
 Identities = 36/165 (21%), Positives = 64/165 (38%), Gaps = 22/165 (13%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNL 61
              F     L  L+LS +       +    L +L++L+L  N       +   ++S+  L
Sbjct: 418 QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH--FPKGNIQKTNSLQTL 475

Query: 62  TSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLE 121
             ++ L LSF +L      +F  L  +  V LSH   N+     L   S   L  L+ + 
Sbjct: 476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH---NR-----LTSSSIEALSHLKGIY 527

Query: 122 MTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT 166
                      +NL++N +   +       LS+ +  ++ QN L 
Sbjct: 528 -----------LNLASNHI-SIILPSLLPILSQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 62.7 bits (153), Expect = 7e-12
 Identities = 31/204 (15%), Positives = 65/204 (31%), Gaps = 24/204 (11%)

Query: 1   MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGN--LTSLRYLDLSANISILQYLSGTFSSSV 58
           +      S     L+         I +GL N  + SL                  F    
Sbjct: 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM-DDEDISPAVFEG-- 250

Query: 59  GNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLE 118
               S+++++L  +      + +F     L+ + L+ ++    +S++ +      L  L+
Sbjct: 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH----LSELPSGLVG--LSTLK 304

Query: 119 VLEMTE-----------WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT- 166
            L ++                SL  +++  NT    L       L  L+  D+S + +  
Sbjct: 305 KLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364

Query: 167 LNVSPDWIPPF-QLKELNLESCNL 189
            +     +     L+ LNL     
Sbjct: 365 SDCCNLQLRNLSHLQSLNLSYNEP 388

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 19/201 (9%)

Query: 1   MPWVFGLSDHLVFLDLSLNNFQ--GPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSV 58
                   ++L  LDLS ++ +        L NL+ L+ L+LS N   L   +  F    
Sbjct: 342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEAFK--- 397

Query: 59  GNLTSIQTLDLSFNNLEGKIATS-FGRLCKLRSVFLSHSNMNQEIS---------KILNI 108
                ++ LDL+F  L+ K A S F  L  L+ + LSHS ++             + LN+
Sbjct: 398 -ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNL 456

Query: 109 FSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLN 168
                  G      +   L  L+ + LS   L  S+ +  F  L  + + D+S N LT +
Sbjct: 457 QGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL-SSIDQHAFTSLKMMNHVDLSHNRLT-S 514

Query: 169 VSPDWIPPFQLKELNLESCNL 189
            S + +   +   LNL S ++
Sbjct: 515 SSIEALSHLKGIYLNLASNHI 535

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 51.6 bits (124), Expect = 4e-08
 Identities = 27/209 (12%), Positives = 50/209 (23%), Gaps = 20/209 (9%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLR--YLDLSANISILQYLSGTFSSSVG 59
                 ++ L  LD   N         + +L       L+L+ N                
Sbjct: 146 LPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN------DIAGIEPGAF 199

Query: 60  NLTSIQTLDLSFNNLEGKI--ATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGL 117
           +    Q+L+         I        +  L        +       +        ++ +
Sbjct: 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259

Query: 118 --------EVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNV 169
                    +   T    S L  ++L+   L  S        LS LK   +S N      
Sbjct: 260 NLQKHYFFNISSNTFHCFSGLQELDLTATHL--SELPSGLVGLSTLKKLVLSANKFENLC 317

Query: 170 SPDWIPPFQLKELNLESCNLVGNRFPSWL 198
                    L  L+++            L
Sbjct: 318 QISASNFPSLTHLSIKGNTKRLELGTGCL 346

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.7 bits (114), Expect = 7e-07
 Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 6/95 (6%)

Query: 1   MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGN 60
                     L  L LS  +          +L  + ++DLS N      L+ +   ++ +
Sbjct: 468 KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN-----RLTSSSIEALSH 522

Query: 61  LTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSH 95
           L  I  L+L+ N++   + +    L + R++ L  
Sbjct: 523 LKGI-YLNLASNHISIILPSLLPILSQQRTINLRQ 556

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 70.9 bits (174), Expect = 9e-15
 Identities = 46/193 (23%), Positives = 84/193 (43%), Gaps = 26/193 (13%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSIQTLD 68
           HL  L+L+ N      P    NL +LR L L +N + ++    G F+     L+++  LD
Sbjct: 57  HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP--LGVFT----GLSNLTKLD 110

Query: 69  LSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKI-LNIFSTCILDGLEVLEMTEWQL 127
           +S N +   +   F  L  L+S+ +     N  +  I    FS   L+ LE L + +  L
Sbjct: 111 ISENKIVILLDYMFQDLYNLKSLEVGD---ND-LVYISHRAFSG--LNSLEQLTLEKCNL 164

Query: 128 S-----------SLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPP 176
           +            L  + L +  +  ++ +  F +L +LK  ++S       ++P+ +  
Sbjct: 165 TSIPTEALSHLHGLIVLRLRHLNI-NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 223

Query: 177 FQLKELNLESCNL 189
             L  L++  CNL
Sbjct: 224 LNLTSLSITHCNL 236

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 61.7 bits (150), Expect = 1e-11
 Identities = 45/198 (22%), Positives = 80/198 (40%), Gaps = 33/198 (16%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSIQTLD 68
           +L  LD+S N     +     +L +L+ L++  N +  +      FS     L S++ L 
Sbjct: 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYIS--HRAFS----GLNSLEQLT 158

Query: 69  LSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKI-LNIFSTCILDGLEVLEMTEW-- 125
           L   NL      +   L  L  + L H      I+ I    F    L  L+VLE++ W  
Sbjct: 159 LEKCNLTSIPTEALSHLHGLIVLRLRH---LN-INAIRDYSFKR--LYRLKVLEISHWPY 212

Query: 126 ---------QLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPP 176
                       +L S+++++  L  ++  +    L  L++ ++S N ++       I  
Sbjct: 213 LDTMTPNCLYGLNLTSLSITHCNL-TAVPYLAVRHLVYLRFLNLSYNPIS------TIEG 265

Query: 177 FQLKEL-NLESCNLVGNR 193
             L EL  L+   LVG +
Sbjct: 266 SMLHELLRLQEIQLVGGQ 283

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 56.3 bits (136), Expect = 1e-09
 Identities = 40/198 (20%), Positives = 71/198 (35%), Gaps = 31/198 (15%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSIQTLD 68
           +L  L++  N+      R    L SL  L L    ++ +   +   S    +L  +  L 
Sbjct: 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP--TEALS----HLHGLIVLR 182

Query: 69  LSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTE---- 124
           L   N+      SF RL +L+ + +SH      ++   N         L  L +T     
Sbjct: 183 LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP--NCLYGL---NLTSLSITHCNLT 237

Query: 125 -------WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPF 177
                    L  L  +NLS N +  ++      +L +L+   +    L        + P+
Sbjct: 238 AVPYLAVRHLVYLRFLNLSYNPI-STIEGSMLHELLRLQEIQLVGGQLA------VVEPY 290

Query: 178 QLKEL-NLESCNLVGNRF 194
             + L  L   N+ GN+ 
Sbjct: 291 AFRGLNYLRVLNVSGNQL 308

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.2 bits (115), Expect = 5e-07
 Identities = 26/132 (19%), Positives = 52/132 (39%), Gaps = 25/132 (18%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSIQTLD 68
           +L  L ++  N        + +L  LR+L+LS N IS ++            L  +Q + 
Sbjct: 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE--GSMLH----ELLRLQEIQ 278

Query: 69  LSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLS 128
           L    L      +F  L  LR + +S + +   + +  ++F                 + 
Sbjct: 279 LVGGQLAVVEPYAFRGLNYLRVLNVSGNQL-TTLEE--SVFH---------------SVG 320

Query: 129 SLDSVNLSNNTL 140
           +L+++ L +N L
Sbjct: 321 NLETLILDSNPL 332

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 69.1 bits (169), Expect = 4e-14
 Identities = 39/195 (20%), Positives = 76/195 (38%), Gaps = 25/195 (12%)

Query: 4   VFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTS 63
           VF     L  L+L+ N            L +L+ L+LS N  + +  S  F      L  
Sbjct: 285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN-LLGELYSSNFY----GLPK 339

Query: 64  IQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMT 123
           +  +DL  N++      +F  L KL+++ L  + +               +  +  + ++
Sbjct: 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI----------HFIPSIPDIFLS 389

Query: 124 EWQLSSLDSVNLSNNTLFGSLFEIH-------FAKLSKLKYFDVSQNSLTLNVSPDWIP- 175
             +L +L  +NL+ N +  S   +          ++  L+   ++QN  + + S D  P 
Sbjct: 390 GNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS-SCSGDQTPS 448

Query: 176 -PFQLKELNLESCNL 189
               L++L L    L
Sbjct: 449 ENPSLEQLFLGENML 463

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 65.2 bits (159), Expect = 1e-12
 Identities = 40/197 (20%), Positives = 64/197 (32%), Gaps = 24/197 (12%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDL 69
               L LS N  +         L  L+ L+L +  + L      F     NL +++ LDL
Sbjct: 25  TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR----NLPNLRILDL 80

Query: 70  SFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSS 129
             + +      +F  L  L  + L                    L    + +     L +
Sbjct: 81  GSSKIYFLHPDAFQGLFHLFELRLYFCG----------------LSDAVLKDGYFRNLKA 124

Query: 130 LDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQ---LKELNLES 186
           L  ++LS N +        F KL+ LK  D S N +   V    + P Q   L   +L +
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAA 183

Query: 187 CNLVGNRFPSWLLSQKS 203
            +L       W      
Sbjct: 184 NSLYSRVSVDWGKCMNP 200

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 60.2 bits (146), Expect = 5e-11
 Identities = 37/189 (19%), Positives = 64/189 (33%), Gaps = 17/189 (8%)

Query: 10  HLVFLDLSLNNFQGPIPRGL-GNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLD 68
           HL  L L+ N F             SL  L L  N+  L + +         L+ +Q L 
Sbjct: 427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLY 486

Query: 69  LSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEM------ 122
           L+ N L       F  L  LR + L+        +++  +    +   LE+L++      
Sbjct: 487 LNHNYLNSLPPGVFSHLTALRGLSLNS-------NRLTVLSHNDLPANLEILDISRNQLL 539

Query: 123 --TEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTL-NVSPDWIPPFQL 179
                   SL  +++++N          F          ++     +  V PD      L
Sbjct: 540 APNPDVFVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSL 599

Query: 180 KELNLESCN 188
             L+ E C+
Sbjct: 600 FSLSTEGCD 608

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 58.3 bits (141), Expect = 2e-10
 Identities = 47/199 (23%), Positives = 71/199 (35%), Gaps = 29/199 (14%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQGPIPRG-LGNLTSLRYLDLSANISILQYLSGTFSSSVGN 60
              F   + L  L+L        I +    NL +LR LDL ++  I       F      
Sbjct: 41  ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQ----G 95

Query: 61  LTSIQTLDLSFNNLEGKI--ATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLE 118
           L  +  L L F  L   +     F  L  L  + LS            N   +  L    
Sbjct: 96  LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK-----------NQIRSLYLHPSF 144

Query: 119 VLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLS--KLKYFDVSQNSLTLNVSPDWIPP 176
                  +L+SL S++ S+N     + E     L    L +F ++ NSL   VS DW   
Sbjct: 145 G------KLNSLKSIDFSSN-QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC 197

Query: 177 FQ-LKELNLESCNLVGNRF 194
               + + LE  ++ GN +
Sbjct: 198 MNPFRNMVLEILDVSGNGW 216

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.6 bits (134), Expect = 2e-09
 Identities = 47/204 (23%), Positives = 75/204 (36%), Gaps = 34/204 (16%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN----ISILQ-----YLSG 52
              F     + ++DL  N+      +    L  L+ LDL  N    I  +      +LSG
Sbjct: 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSG 390

Query: 53  TFSSSVGNLT-SIQTLDLSFNNLEG-KIATSFGRLCKLRSVFLSHSNMNQEISKILNIFS 110
               ++  +  +   + LS N LE   I     R+  L+ + L+            N FS
Sbjct: 391 NKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQ-----------NRFS 439

Query: 111 TCILDGLEVLEMTEWQLSSLDSVNLSNNTL----FGSLFEIHFAKLSKLKYFDVSQNSLT 166
           +C  D       T  +  SL+ + L  N L       L    F  LS L+   ++ N L 
Sbjct: 440 SCSGDQ------TPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN 493

Query: 167 LNVSPDWIPPF-QLKELNLESCNL 189
            ++ P        L+ L+L S  L
Sbjct: 494 -SLPPGVFSHLTALRGLSLNSNRL 516

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.6 bits (134), Expect = 2e-09
 Identities = 37/212 (17%), Positives = 72/212 (33%), Gaps = 26/212 (12%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLT--SLRYLDLSANISILQYLSGTFSSSVG 59
              FG  + L  +D S N         L  L   +L +  L+AN S+   +S  +   + 
Sbjct: 141 HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN-SLYSRVSVDWGKCMN 199

Query: 60  NL--TSIQTLDLSFNNLEGKIATSF---------GRLCKLRSVFLSHSNMNQEISKILNI 108
                 ++ LD+S N     I  +F           L     +  +    +       N 
Sbjct: 200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259

Query: 109 FSTCILDGLEVL-----------EMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKY 157
           F+      +  L                 L  L  +NL+ N +   + +  F  L  L+ 
Sbjct: 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQV 318

Query: 158 FDVSQNSLTLNVSPDWIPPFQLKELNLESCNL 189
            ++S N L    S ++    ++  ++L+  ++
Sbjct: 319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHI 350

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.8 bits (132), Expect = 4e-09
 Identities = 35/189 (18%), Positives = 69/189 (36%), Gaps = 22/189 (11%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDL 69
            +       N         L     +       + +I      TF+      +S++ LDL
Sbjct: 217 TVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH-NIKDPDQNTFAGLA--RSSVRHLDL 273

Query: 70  SFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSS 129
           S   +    +  F  L  L+ + L+++ +N+                  + +   + L +
Sbjct: 274 SHGFVFSLNSRVFETLKDLKVLNLAYNKINK------------------IADEAFYGLDN 315

Query: 130 LDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNL 189
           L  +NLS N L G L+  +F  L K+ Y D+ +N + +     +    +L+ L+L    L
Sbjct: 316 LQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374

Query: 190 VGNRFPSWL 198
               F   +
Sbjct: 375 TTIHFIPSI 383

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.3 bits (115), Expect = 6e-07
 Identities = 34/143 (23%), Positives = 55/143 (38%), Gaps = 17/143 (11%)

Query: 60  NLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEV 119
            L + + L LSFN +    A+SF  L +L+ + L        I K    F    L  L +
Sbjct: 22  VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDK--EAFRN--LPNLRI 77

Query: 120 LEMTE-----------WQLSSLDSVNLSNNTL-FGSLFEIHFAKLSKLKYFDVSQNSLT- 166
           L++               L  L  + L    L    L + +F  L  L   D+S+N +  
Sbjct: 78  LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS 137

Query: 167 LNVSPDWIPPFQLKELNLESCNL 189
           L + P +     LK ++  S  +
Sbjct: 138 LYLHPSFGKLNSLKSIDFSSNQI 160

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 69.0 bits (169), Expect = 4e-14
 Identities = 46/200 (23%), Positives = 80/200 (40%), Gaps = 33/200 (16%)

Query: 6   GLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSI 64
           G+  +  +L+L  NN Q        +L  L  L L  N I  ++   G F+     L S+
Sbjct: 72  GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE--VGAFN----GLASL 125

Query: 65  QTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKI-LNIFSTCILDGLEVLEMT 123
            TL+L  N L    + +F  L KLR ++L +   N  I  I    F+   +  L  L++ 
Sbjct: 126 NTLELFDNWLTVIPSGAFEYLSKLRELWLRN---NP-IESIPSYAFNR--VPSLMRLDLG 179

Query: 124 EW------------QLSSLDSVNLSNNTLFGSLFEI-HFAKLSKLKYFDVSQNSLTLNVS 170
           E              L +L  +NL       ++ ++ +   L  L+  ++S N     + 
Sbjct: 180 ELKKLEYISEGAFEGLFNLKYLNLGMC----NIKDMPNLTPLVGLEELEMSGNHFP-EIR 234

Query: 171 PDWIPPF-QLKELNLESCNL 189
           P        LK+L + +  +
Sbjct: 235 PGSFHGLSSLKKLWVMNSQV 254

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 63.2 bits (154), Expect = 4e-12
 Identities = 45/196 (22%), Positives = 73/196 (37%), Gaps = 33/196 (16%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSIQTLD 68
           HL  L L  N+ +         L SL  L+L  N ++++   SG F      L+ ++ L 
Sbjct: 100 HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP--SGAFE----YLSKLRELW 153

Query: 69  LSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLS 128
           L  N +E   + +F R+  L  + L      + IS+    F    L  L+ L +    + 
Sbjct: 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISE--GAFEG--LFNLKYLNLGMCNIK 209

Query: 129 SLDS---------VNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPF-- 177
            + +         + +S N     +    F  LS LK   V  + ++       I     
Sbjct: 210 DMPNLTPLVGLEELEMSGNHF-PEIRPGSFHGLSSLKKLWVMNSQVS------LIERNAF 262

Query: 178 ----QLKELNLESCNL 189
                L ELNL   NL
Sbjct: 263 DGLASLVELNLAHNNL 278

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 53.6 bits (129), Expect = 7e-09
 Identities = 39/159 (24%), Positives = 61/159 (38%), Gaps = 31/159 (19%)

Query: 10  HLVFLDLSLNNFQGPIPRG-LGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSIQTL 67
            L+ LDL        I  G    L +L+YL+L    I  +  L+         L  ++ L
Sbjct: 172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLT--------PLVGLEEL 223

Query: 68  DLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKI-LNIFSTCILDGLEVLEMTEWQ 126
           ++S N+       SF  L  L+ +++ +S     +S I  N F                 
Sbjct: 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ----VSLIERNAFDG--------------- 264

Query: 127 LSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSL 165
           L+SL  +NL++N L  SL    F  L  L    +  N  
Sbjct: 265 LASLVELNLAHNNL-SSLPHDLFTPLRYLVELHLHHNPW 302

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.0 bits (169), Expect = 4e-14
 Identities = 51/200 (25%), Positives = 82/200 (41%), Gaps = 33/200 (16%)

Query: 6   GLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSI 64
           G+S +   L+L  N  Q        +L  L  L LS N I  ++   G F+     L ++
Sbjct: 61  GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE--IGAFN----GLANL 114

Query: 65  QTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKI-LNIFSTCILDGLEVLEMT 123
            TL+L  N L      +F  L KL+ ++L +   N  I  I    F+   +  L  L++ 
Sbjct: 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRN---NP-IESIPSYAFNR--IPSLRRLDLG 168

Query: 124 EW------------QLSSLDSVNLSNNTLFGSLFEI-HFAKLSKLKYFDVSQNSLTLNVS 170
           E              LS+L  +NL+      +L EI +   L KL   D+S N L+  + 
Sbjct: 169 ELKRLSYISEGAFEGLSNLRYLNLAMC----NLREIPNLTPLIKLDELDLSGNHLS-AIR 223

Query: 171 PDWIPPF-QLKELNLESCNL 189
           P        L++L +    +
Sbjct: 224 PGSFQGLMHLQKLWMIQSQI 243

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.5 bits (160), Expect = 6e-13
 Identities = 47/196 (23%), Positives = 74/196 (37%), Gaps = 33/196 (16%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSIQTLD 68
           HL  L LS N+ +         L +L  L+L  N ++ +   +G F      L+ ++ L 
Sbjct: 89  HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP--NGAFV----YLSKLKELW 142

Query: 69  LSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQ-- 126
           L  N +E   + +F R+  LR + L        IS+    F    L  L  L +      
Sbjct: 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISE--GAFEG--LSNLRYLNLAMCNLR 198

Query: 127 -------LSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPF-- 177
                  L  LD ++LS N L  ++    F  L  L+   + Q+ +        I     
Sbjct: 199 EIPNLTPLIKLDELDLSGNHL-SAIRPGSFQGLMHLQKLWMIQSQIQ------VIERNAF 251

Query: 178 ----QLKELNLESCNL 189
                L E+NL   NL
Sbjct: 252 DNLQSLVEINLAHNNL 267

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 66.6 bits (163), Expect = 2e-13
 Identities = 46/186 (24%), Positives = 73/186 (39%), Gaps = 25/186 (13%)

Query: 6   GLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSI 64
           G+      L+L  N  Q         LT L  L LS+N +S     S +        TS+
Sbjct: 25  GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF----GTTSL 80

Query: 65  QTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTE 124
           + LDLSFN +   ++++F  L +L  +   HSN       +  +    +           
Sbjct: 81  KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN-------LKQMSEFSVFLS-------- 124

Query: 125 WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPD-WIPPFQLKELN 183
             L +L  +++S+       F   F  LS L+   ++ NS   N  PD +     L  L+
Sbjct: 125 --LRNLIYLDISHTHT-RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181

Query: 184 LESCNL 189
           L  C L
Sbjct: 182 LSQCQL 187

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 65.4 bits (160), Expect = 4e-13
 Identities = 48/215 (22%), Positives = 79/215 (36%), Gaps = 36/215 (16%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSIQTLD 68
            L +LDLS N     +      L  L +LD   + +  +      F     +L ++  LD
Sbjct: 79  SLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE-FSVFL----SLRNLIYLD 132

Query: 69  LSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKIL-NIFSTCILDGLEVLEMTE--- 124
           +S  +        F  L  L  + ++    N      L +IF+   L  L  L++++   
Sbjct: 133 ISHTHTRVAFNGIFNGLSSLEVLKMAG---NSFQENFLPDIFTE--LRNLTFLDLSQCQL 187

Query: 125 --------WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPP 176
                     LSSL  +N+S+N    SL    +  L+ L+  D S N +        +  
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQH 245

Query: 177 F--QLKELNLE------SCNLVGNRFPSWLLSQKS 203
           F   L  LNL       +C      F  W+  Q+ 
Sbjct: 246 FPSSLAFLNLTQNDFACTCEHQS--FLQWIKDQRQ 278

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 63.0 bits (154), Expect = 4e-12
 Identities = 34/187 (18%), Positives = 61/187 (32%), Gaps = 30/187 (16%)

Query: 8   SDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTL 67
               V L+L         P     L+ L+++ + A       L      ++     ++TL
Sbjct: 80  QPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAA-----GLM-ELPDTMQQFAGLETL 132

Query: 68  DLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQL 127
            L+ N L   +  S   L +LR + +       E+ + L                    L
Sbjct: 133 TLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPL---------ASTDASGEHQGL 182

Query: 128 SSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPP-----FQLKEL 182
            +L S+ L    +         A L  LK   +  + L+       + P      +L+EL
Sbjct: 183 VNLQSLRLEWTGI--RSLPASIANLQNLKSLKIRNSPLSA------LGPAIHHLPKLEEL 234

Query: 183 NLESCNL 189
           +L  C  
Sbjct: 235 DLRGCTA 241

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 52.6 bits (127), Expect = 1e-08
 Identities = 25/157 (15%), Positives = 51/157 (32%), Gaps = 26/157 (16%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDL 69
           +L  L L     +  +P  + NL +L+ L +  +      LS     ++ +L  ++ LDL
Sbjct: 184 NLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNS-----PLS-ALGPAIHHLPKLEELDL 236

Query: 70  SFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSS 129
                       FG    L+ + L   +    +   ++                  +L+ 
Sbjct: 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH------------------RLTQ 278

Query: 130 LDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT 166
           L+ ++L        L     A+L       V  +   
Sbjct: 279 LEKLDLRGCVNLSRLPS-LIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.1 bits (123), Expect = 5e-08
 Identities = 37/190 (19%), Positives = 69/190 (36%), Gaps = 40/190 (21%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYL-----SGTFSSSVGNLTSI 64
            L  L L+ N  +  +P  + +L  LR L + A    L  L     S   S     L ++
Sbjct: 128 GLETLTLARNPLRA-LPASIASLNRLRELSIRAC-PELTELPEPLASTDASGEHQGLVNL 185

Query: 65  QTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTE 124
           Q+L L +  +   +  S   L  L+S+ + +S +            + +   +       
Sbjct: 186 QSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL------------SALGPAIH------ 226

Query: 125 WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVS-QNSLTLNVSPDWIPP-----FQ 178
             L  L+ ++L   T   +     F   + LK   +   ++L        +P       Q
Sbjct: 227 -HLPKLEELDLRGCTALRNYPP-IFGGRAPLKRLILKDCSNLL------TLPLDIHRLTQ 278

Query: 179 LKELNLESCN 188
           L++L+L  C 
Sbjct: 279 LEKLDLRGCV 288

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.9 bits (107), Expect = 5e-06
 Identities = 19/91 (20%), Positives = 30/91 (32%), Gaps = 5/91 (5%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDL 69
            L  LDL         P   G    L+ L L  + S L  L       +  LT ++ LDL
Sbjct: 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILK-DCSNLLTLP----LDIHRLTQLEKLDL 284

Query: 70  SFNNLEGKIATSFGRLCKLRSVFLSHSNMNQ 100
                  ++ +   +L     + +      Q
Sbjct: 285 RGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 63.2 bits (154), Expect = 4e-12
 Identities = 45/193 (23%), Positives = 72/193 (37%), Gaps = 29/193 (15%)

Query: 10  HLVFLDLSLNNFQ---GPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSIQ 65
            L FLDLS N             G   SL+ L LS N +  +Q            L ++ 
Sbjct: 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL----TLKNLT 390

Query: 66  TLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEW 125
           +LD+S N     +  S     K+R + LS +         + +  TCI   LEVL+++  
Sbjct: 391 SLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG--------IRVVKTCIPQTLEVLDVSNN 441

Query: 126 QLSSLDS-------VNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQ 178
            L S          + +S N L  +L +        L    +S+N L  +V         
Sbjct: 442 NLDSFSLFLPRLQELYISRNKL-KTLPDASL--FPVLLVMKISRNQLK-SVPDGIFDRLT 497

Query: 179 -LKELNLESCNLV 190
            L+++ L +    
Sbjct: 498 SLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 61.7 bits (150), Expect = 1e-11
 Identities = 42/186 (22%), Positives = 73/186 (39%), Gaps = 26/186 (13%)

Query: 6   GLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSI 64
           GL+  +  LDLS N         L    +L+ L L ++ I+ ++     F     +L S+
Sbjct: 23  GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIE--GDAFY----SLGSL 76

Query: 65  QTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTE 124
           + LDLS N+L    ++ FG L  L+ + L     N        +  T +           
Sbjct: 77  EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG---NP----YQTLGVTSLFPN-------- 121

Query: 125 WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQ-LKELN 183
             L++L ++ + N   F  +  I FA L+ L   ++   SL  N     +   + +  L 
Sbjct: 122 --LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLT 178

Query: 184 LESCNL 189
           L     
Sbjct: 179 LHLSES 184

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.8 bits (140), Expect = 3e-10
 Identities = 34/187 (18%), Positives = 62/187 (33%), Gaps = 17/187 (9%)

Query: 4   VFGLSDHLVFLDLSLNNFQG-PIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLT 62
            FG    L +L+L  N +Q   +     NLT+L+ L +    +  +     F+     LT
Sbjct: 93  WFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA----GLT 148

Query: 63  SIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEM 122
           S+  L++   +L    + S   +  +  + L  S                  D L  +  
Sbjct: 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE--------SAFLLEIFADILSSVRY 200

Query: 123 TEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKEL 182
            E + ++L     S   +      +           D S N L   +        +L E+
Sbjct: 201 LELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL----ELSEV 256

Query: 183 NLESCNL 189
             + C L
Sbjct: 257 EFDDCTL 263

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.1 bits (133), Expect = 2e-09
 Identities = 23/188 (12%), Positives = 65/188 (34%), Gaps = 6/188 (3%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNL 61
              F     L  L++   + +    + L ++  + +L L  +       +         L
Sbjct: 141 RIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS-----ESAFLLEIFADIL 195

Query: 62  TSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLE 121
           +S++ L+L   NL     +          +    +     ++         +L  +  L 
Sbjct: 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL-AFRGSVLTDESFNELLKLLRYILELS 254

Query: 122 MTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKE 181
             E+   +L+ +   N +    + E+   +   ++   + Q  L  ++S  +    ++K 
Sbjct: 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKR 314

Query: 182 LNLESCNL 189
           + +E+  +
Sbjct: 315 ITVENSKV 322

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.9 bits (122), Expect = 6e-08
 Identities = 31/181 (17%), Positives = 58/181 (32%), Gaps = 22/181 (12%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDL 69
                D + +        G     ++R L +     +   LS  +S     L  ++ + +
Sbjct: 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIP-QFYLFYDLSTVYS----LLEKVKRITV 317

Query: 70  SFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSS 129
             + +     +    L  L  + LS + M +E  K                        S
Sbjct: 318 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA---------------WPS 362

Query: 130 LDSVNLSNNTLFG-SLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCN 188
           L ++ LS N L            L  L   D+S+N+    +      P +++ LNL S  
Sbjct: 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG 421

Query: 189 L 189
           +
Sbjct: 422 I 422

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 62.8 bits (153), Expect = 6e-12
 Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 24/191 (12%)

Query: 6   GLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQ 65
            L      LDLS N  +        +   L+ LDLS    I     G +     +L+ + 
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQ----SLSHLS 79

Query: 66  TLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEW 125
           TL L+ N ++     +F  L  L+ +    +N+    +  +                   
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI------------------G 121

Query: 126 QLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLE 185
            L +L  +N+++N +       +F+ L+ L++ D+S N +  ++    +       L   
Sbjct: 122 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNL 180

Query: 186 SCNLVGNRFPS 196
           S +L  N    
Sbjct: 181 SLDLSLNPMNF 191

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 59.3 bits (144), Expect = 8e-11
 Identities = 35/185 (18%), Positives = 64/185 (34%), Gaps = 27/185 (14%)

Query: 4   VFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLT 62
               +  L +LDLS N     +      L  L +LD   + +  +      F     +L 
Sbjct: 368 SDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE-FSVFL----SLR 421

Query: 63  SIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEM 122
           ++  LD+S  +        F  L  L  + ++ ++           F   I   L     
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-------FQENFLPDIFTEL----- 469

Query: 123 TEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPF-QLKE 181
                 +L  ++LS   L   L    F  LS L+  +++ N L  +V          L++
Sbjct: 470 -----RNLTFLDLSQCQL-EQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRLTSLQK 522

Query: 182 LNLES 186
           + L +
Sbjct: 523 IWLHT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.6 bits (142), Expect = 1e-10
 Identities = 41/206 (19%), Positives = 69/206 (33%), Gaps = 17/206 (8%)

Query: 4   VFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTS 63
            F     L  L     N        +G+L +L+ L+++ N       S        NLT+
Sbjct: 95  AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN----LIQSFKLPEYFSNLTN 150

Query: 64  IQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKI-LNIFSTCILDGL----- 117
           ++ LDLS N ++    T    L ++  + LS       ++ I    F    L  L     
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 210

Query: 118 ----EVLEMTEWQLSSLDSVNLSNNTLFGS--LFEIHFAKLSKLKYFDVSQNSLT-LNVS 170
                V++     L+ L+   L          L +   + L  L    + +  L  L+  
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270

Query: 171 PDWIPPFQLKELNLESCNLVGNRFPS 196
            D I        N+ S +LV      
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIER 296

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.2 bits (141), Expect = 2e-10
 Identities = 45/192 (23%), Positives = 74/192 (38%), Gaps = 28/192 (14%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNL 61
            + F     L  LDLS    Q        +L+ L  L L+ N  I     G FS     L
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFS----GL 99

Query: 62  TSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLE 121
           +S+Q L     NL        G L  L+ + ++H N+ Q   K+   FS           
Sbjct: 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLIQSF-KLPEYFS----------- 146

Query: 122 MTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYF----DVSQNSLTLNVSPDWIPPF 177
                L++L+ ++LS+N +  S++      L ++       D+S N +   + P      
Sbjct: 147 ----NLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEI 200

Query: 178 QLKELNLESCNL 189
           +L +L L +   
Sbjct: 201 RLHKLTLRNNFD 212

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 56.6 bits (137), Expect = 6e-10
 Identities = 52/184 (28%), Positives = 80/184 (43%), Gaps = 29/184 (15%)

Query: 10  HLVFLDLSLN--NFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTL 67
            L FLDLS N  +F+G   +     TSL+YLDLS N   +  +S  F      L  ++ L
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG--VITMSSNFL----GLEQLEHL 401

Query: 68  DLSFNNLEGKIATS-FGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQ 126
           D   +NL+     S F  L  L  + +SH++          +    I +GL         
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTH--------TRVAFNGIFNGL--------- 444

Query: 127 LSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPF-QLKELNLE 185
            SSL+ + ++ N+   +     F +L  L + D+SQ  L   +SP        L+ LN+ 
Sbjct: 445 -SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMA 502

Query: 186 SCNL 189
           S  L
Sbjct: 503 SNQL 506

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 46/189 (24%), Positives = 72/189 (38%), Gaps = 23/189 (12%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDL 69
           HL  ++     F          L SL+ L  ++N        G  + S  +L S++ LDL
Sbjct: 308 HLELVNCKFGQFPT------LKLKSLKRLTFTSN-------KGGNAFSEVDLPSLEFLDL 354

Query: 70  SFNNLE--GKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILD----GLEVLEMT 123
           S N L   G  + S      L+ + LS + +    S  L +     LD     L+ +   
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF 414

Query: 124 E--WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPF-QLK 180
                L +L  +++S+       F   F  LS L+   ++ NS   N  PD       L 
Sbjct: 415 SVFLSLRNLIYLDISHTHT-RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473

Query: 181 ELNLESCNL 189
            L+L  C L
Sbjct: 474 FLDLSQCQL 482

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 35/147 (23%), Positives = 55/147 (37%), Gaps = 24/147 (16%)

Query: 4   VFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSV-GNLT 62
           VF    +L++LD+S  + +         L+SL  L ++ N          F   +   L 
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN-----SFQENFLPDIFTELR 470

Query: 63  SIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEM 122
           ++  LDLS   LE    T+F  L  L+ + ++    NQ     L      I D       
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS---NQ-----LKSVPDGIFDR------ 516

Query: 123 TEWQLSSLDSVNLSNNTLFGSLFEIHF 149
               L+SL  + L  N    S   I +
Sbjct: 517 ----LTSLQKIWLHTNPWDCSCPRIDY 539

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.2 bits (115), Expect = 6e-07
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 6/95 (6%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQGPIPRG-LGNLTSLRYLDLSANISILQYLSGTFSSSVGN 60
             +F     L  L ++ N+FQ          L +L +LDLS        L     ++  +
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-----QLEQLSPTAFNS 492

Query: 61  LTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSH 95
           L+S+Q L+++ N L+      F RL  L+ ++L  
Sbjct: 493 LSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNL 61
           P +F    +L FLDLS    +   P    +L+SL+ L++++N      L          L
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-----QLKSVPDGIFDRL 517

Query: 62  TSIQTLDLSFNNL 74
           TS+Q + L  N  
Sbjct: 518 TSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 25/181 (13%), Positives = 66/181 (36%), Gaps = 21/181 (11%)

Query: 17  SLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEG 76
            L+ +   I      LT++    L +  +I +    +++        ++ ++  F     
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSV-TIERVKDFSYNF---GWQHLELVNCKFGQF-- 319

Query: 77  KIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILD-------GLEVLEMTEWQLSS 129
                  +L  L+ +  +  N        +++ S   LD              +++  +S
Sbjct: 320 ----PTLKLKSLKRLTFTS-NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 130 LDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT-LNVSPDWIPPFQLKELNLESCN 188
           L  ++LS N +       +F  L +L++ D   ++L  ++    ++    L  L++   +
Sbjct: 375 LKYLDLSFNGV--ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 189 L 189
            
Sbjct: 433 T 433

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 61.5 bits (150), Expect = 1e-11
 Identities = 35/200 (17%), Positives = 72/200 (36%), Gaps = 35/200 (17%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGN 60
             +   + ++  LDLS N         L   T L  L+LS+N +             + +
Sbjct: 27  ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET--------LDLES 78

Query: 61  LTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVL 120
           L++++TLDL+ N +             + ++  ++   N      ++  S     G + +
Sbjct: 79  LSTLRTLDLNNNYV-----QELLVGPSIETLHAAN---NN-----ISRVSCSRGQGKKNI 125

Query: 121 EM-----------TEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNV 169
            +            E   S +  ++L  N +    F    A    L++ ++  N +    
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY--D 183

Query: 170 SPDWIPPFQLKELNLESCNL 189
               +   +LK L+L S  L
Sbjct: 184 VKGQVVFAKLKTLDLSSNKL 203

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.5 bits (124), Expect = 3e-08
 Identities = 32/200 (16%), Positives = 60/200 (30%), Gaps = 30/200 (15%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQG-PIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVG 59
               G    + +LDL LN            +  +L +L+L  N I  ++           
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-------- 188

Query: 60  NLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEV 119
               ++TLDLS N L   +   F     +  + L +   N+                L +
Sbjct: 189 VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRN---NK----------------LVL 228

Query: 120 LEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQL 179
           +E       +L+  +L  N          F+K  +++             + +      L
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288

Query: 180 KELNLESCNLVGNRFPSWLL 199
                  C  +   F   L+
Sbjct: 289 GHYGAYCCEDLPAPFADRLI 308

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.9 bits (145), Expect = 6e-11
 Identities = 35/200 (17%), Positives = 72/200 (36%), Gaps = 35/200 (17%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGN 60
             +   + ++  LDLS N         L   T L  L+LS+N +             + +
Sbjct: 27  ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET--------LDLES 78

Query: 61  LTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVL 120
           L++++TLDL+ N +             + ++  ++   N      ++  S     G + +
Sbjct: 79  LSTLRTLDLNNNYV-----QELLVGPSIETLHAAN---NN-----ISRVSCSRGQGKKNI 125

Query: 121 EM-----------TEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNV 169
            +            E   S +  ++L  N +    F    A    L++ ++  N +    
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY--D 183

Query: 170 SPDWIPPFQLKELNLESCNL 189
               +   +LK L+L S  L
Sbjct: 184 VKGQVVFAKLKTLDLSSNKL 203

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.8 bits (124), Expect = 4e-08
 Identities = 33/204 (16%), Positives = 62/204 (30%), Gaps = 30/204 (14%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQG-PIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVG 59
               G    + +LDL LN            +  +L +L+L  N I  ++           
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-------- 188

Query: 60  NLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEV 119
               ++TLDLS N L   +   F     +  + L +   N+                L +
Sbjct: 189 VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRN---NK----------------LVL 228

Query: 120 LEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQL 179
           +E       +L+  +L  N          F+K  +++             + +      L
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288

Query: 180 KELNLESCNLVGNRFPSWLLSQKS 203
                  C  +   F   L++ K 
Sbjct: 289 GHYGAYCCEDLPAPFADRLIALKR 312

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 58.1 bits (141), Expect = 2e-10
 Identities = 45/208 (21%), Positives = 67/208 (32%), Gaps = 33/208 (15%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDL 69
           +L  L L  N            L  L  LDLS N  +      TF      L  + TL L
Sbjct: 57  NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH----GLGRLHTLHL 112

Query: 70  SFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKI-LNIFSTCILDGLEVLEMTE---- 124
               L+      F  L  L+ ++L     N  +  +  + F    L  L  L +      
Sbjct: 113 DRCGLQELGPGLFRGLAALQYLYLQD---NA-LQALPDDTFRD--LGNLTHLFLHGNRIS 166

Query: 125 -------WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPD-WIPP 176
                    L SLD + L  N +   +    F  L +L    +  N+L+  +  +   P 
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRV-AHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPL 224

Query: 177 FQLKELNLE------SCNLVGNRFPSWL 198
             L+ L L        C        +WL
Sbjct: 225 RALQYLRLNDNPWVCDCRARP--LWAWL 250

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 33/188 (17%), Positives = 65/188 (34%), Gaps = 31/188 (16%)

Query: 6   GLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSI 64
           G+      + L  N              +L  L L +N ++ +   +  F+     L  +
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID--AAAFT----GLALL 82

Query: 65  QTLDLSFNNLEGKI-ATSFGRLCKLRSVFLSHSNMNQEISKI-LNIFSTCILDGLEVLEM 122
           + LDLS N     +   +F  L +L ++ L        + ++   +F             
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR---CG-LQELGPGLFR------------ 126

Query: 123 TEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPF-QLKE 181
               L++L  + L +N L  +L +  F  L  L +  +  N ++ +V          L  
Sbjct: 127 ---GLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDR 181

Query: 182 LNLESCNL 189
           L L    +
Sbjct: 182 LLLHQNRV 189

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 57.2 bits (138), Expect = 5e-10
 Identities = 32/181 (17%), Positives = 66/181 (36%), Gaps = 23/181 (12%)

Query: 9   DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLD 68
             L    +  + F  P        +++   + + +                 ++    LD
Sbjct: 276 KALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVS-----GTRMVHMLCPSKISPFLHLD 330

Query: 69  LSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLS 128
            S N L   +  + G L +L ++ L   N  +E+SKI  + +               Q+ 
Sbjct: 331 FSNNLLTDTVFENCGHLTELETLIL-QMNQLKELSKIAEMTT---------------QMK 374

Query: 129 SLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCN 188
           SL  +++S N++     +   +    L   ++S N LT  +      P ++K L+L S  
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC--LPPRIKVLDLHSNK 432

Query: 189 L 189
           +
Sbjct: 433 I 433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 34/174 (19%), Positives = 69/174 (39%), Gaps = 24/174 (13%)

Query: 4   VFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLT 62
                   + LD S N     +    G+LT L  L L  N +  L  ++   +     + 
Sbjct: 319 CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT----QMK 374

Query: 63  SIQTLDLSFNNLE-GKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLE 121
           S+Q LD+S N++   +          L S+ +S    N     + +    C+   ++VL+
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS---NI----LTDTIFRCLPPRIKVLD 427

Query: 122 MTEWQLSSLDS----------VNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSL 165
           +   ++ S+            +N+++N L  S+ +  F +L+ L+   +  N  
Sbjct: 428 LHSNKIKSIPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.8 bits (98), Expect = 8e-05
 Identities = 41/181 (22%), Positives = 62/181 (34%), Gaps = 30/181 (16%)

Query: 6   GLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYL-SGTFSSSVGNLTSI 64
            LS     L++S N         + +L+ LR L +S N   +QYL    F         +
Sbjct: 18  DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHN--RIQYLDISVFKF----NQEL 71

Query: 65  QTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEIS-KILNIFSTCILDGLEVLEMT 123
           + LDLS N L      S      L+ + LS    N   +  I   F              
Sbjct: 72  EYLDLSHNKLV---KISCHPTVNLKHLDLSF---NAFDALPICKEFG------------- 112

Query: 124 EWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELN 183
              +S L  + LS   L  S      A L+  K   V   +      P+ +  F  + L+
Sbjct: 113 --NMSQLKFLGLSTTHLEKSSVLP-IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLH 169

Query: 184 L 184
           +
Sbjct: 170 I 170

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 35/210 (16%), Positives = 67/210 (31%), Gaps = 28/210 (13%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNL 61
             VF  +  L +LDLS N     I        +L++LDLS N     + +       GN+
Sbjct: 62  ISVFKFNQELEYLDLSHNKLVK-IS--CHPTVNLKHLDLSFN----AFDALPICKEFGNM 114

Query: 62  TSIQTLDLSFNNLEGKIATSFGRLCK-------------------LRSVFLSHSNMNQEI 102
           + ++ L LS  +LE         L                     L+       ++    
Sbjct: 115 SQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174

Query: 103 SKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQ 162
           +K  +      +  +  LE++  +    D+      ++   L          L   + + 
Sbjct: 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234

Query: 163 NSLTLNVSPDWIPPFQLKELNLESCNLVGN 192
           NS    +   W     +   ++ +  L G 
Sbjct: 235 NSFIRILQLVWHTT--VWYFSISNVKLQGQ 262

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 56.7 bits (137), Expect = 6e-10
 Identities = 40/185 (21%), Positives = 70/185 (37%), Gaps = 24/185 (12%)

Query: 6   GLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSI 64
           GL++ +  LDLS N         L    +L+ L L++N I+ ++    +FS    +L S+
Sbjct: 49  GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE--EDSFS----SLGSL 102

Query: 65  QTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTE 124
           + LDLS+N L    ++ F  L  L  + L     N        +  T +           
Sbjct: 103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLG---NP----YKTLGETSLFSH-------- 147

Query: 125 WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNL 184
             L+ L  + + N   F  +    FA L+ L+  ++  + L             +  L L
Sbjct: 148 --LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205

Query: 185 ESCNL 189
                
Sbjct: 206 HMKQH 210

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 50.5 bits (121), Expect = 7e-08
 Identities = 25/164 (15%), Positives = 54/164 (32%), Gaps = 18/164 (10%)

Query: 4   VFGLSDHLVFLDLSLNNFQGPIPRG-LGNLTSLRYLDLSANISILQYLSGTFSSSVGNLT 62
           +F     L  L +   +    I R     LT L  L++ A+  +  Y   +      ++ 
Sbjct: 144 LFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLK----SIQ 198

Query: 63  SIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEM 122
           ++  L L        +         +  + L         +   +  ST   + L     
Sbjct: 199 NVSHLILHMKQHILLLEIFVDVTSSVECLELRD---TDLDTFHFSELSTGETNSL----- 250

Query: 123 TEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT 166
              +  +  +V +++ +LF         ++S L   + S+N L 
Sbjct: 251 --IKKFTFRNVKITDESLFQ--VMKLLNQISGLLELEFSRNQLK 290

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 56.4 bits (137), Expect = 7e-10
 Identities = 37/194 (19%), Positives = 70/194 (36%), Gaps = 41/194 (21%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSIQTLD 68
            L  L +  N         L NLT+LR L L+ + IS +        S + NLT + +L+
Sbjct: 89  KLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDI--------SPLANLTKMYSLN 138

Query: 69  LSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTE---- 124
           L  N+    + +    +  L  + ++    ++ +  +  I +   L  L  L +      
Sbjct: 139 LGANHNLSDL-SPLSNMTGLNYLTVTE---SK-VKDVTPIAN---LTDLYSLSLNYNQIE 190

Query: 125 -----WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPF-- 177
                  L+SL       N +         A +++L    +  N +T       + P   
Sbjct: 191 DISPLASLTSLHYFTAYVNQITDI---TPVANMTRLNSLKIGNNKITD------LSPLAN 241

Query: 178 --QLKELNLESCNL 189
             QL  L + +  +
Sbjct: 242 LSQLTWLEIGTNQI 255

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 54.5 bits (132), Expect = 3e-09
 Identities = 33/194 (17%), Positives = 69/194 (35%), Gaps = 41/194 (21%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSIQTLD 68
             +   L   +    +      L S+  L ++   ++ +          +  LT+++ L+
Sbjct: 23  EGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVASI--------QGIEYLTNLEYLN 72

Query: 69  LSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTE---- 124
           L+ N +          L KL ++++   N   +IS + N      L  L  L + E    
Sbjct: 73  LNGNQITDISP--LSNLVKLTNLYIGT-NKITDISALQN------LTNLRELYLNEDNIS 123

Query: 125 -----WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPF-- 177
                  L+ + S+NL  N     L     + ++ L Y  V+++ +        + P   
Sbjct: 124 DISPLANLTKMYSLNLGANHNLSDL--SPLSNMTGLNYLTVTESKVKD------VTPIAN 175

Query: 178 --QLKELNLESCNL 189
              L  L+L    +
Sbjct: 176 LTDLYSLSLNYNQI 189

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.2 bits (126), Expect = 2e-08
 Identities = 40/185 (21%), Positives = 69/185 (37%), Gaps = 44/185 (23%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSIQTLD 68
            L +    +N      P  + N+T L  L +  N I+ L        S + NL+ +  L+
Sbjct: 200 SLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDL--------SPLANLSQLTWLE 249

Query: 69  LSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLS 128
           +  N +      +   L KL+ + +     NQ IS I  +                  LS
Sbjct: 250 IGTNQISD--INAVKDLTKLKMLNVGS---NQ-ISDISVL----------------NNLS 287

Query: 129 SLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPF----QLKELNL 184
            L+S+ L+NN L G+        L+ L    +SQN +T       I P     ++   + 
Sbjct: 288 QLNSLFLNNNQL-GNEDMEVIGGLTNLTTLFLSQNHIT------DIRPLASLSKMDSADF 340

Query: 185 ESCNL 189
            +  +
Sbjct: 341 ANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 51.0 bits (123), Expect = 5e-08
 Identities = 34/157 (21%), Positives = 65/157 (41%), Gaps = 34/157 (21%)

Query: 11  LVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSIQTLDL 69
           L  L +  N      P  L NL+ L +L++  N IS +        ++V +LT ++ L++
Sbjct: 223 LNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--------NAVKDLTKLKMLNV 272

Query: 70  SFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSS 129
             N +     +    L +L S+FL++   NQ  ++ + +                  L++
Sbjct: 273 GSNQISD--ISVLNNLSQLNSLFLNN---NQLGNEDMEVIG---------------GLTN 312

Query: 130 LDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT 166
           L ++ LS N +         A LSK+   D +   + 
Sbjct: 313 LTTLFLSQNHITDI---RPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 7/66 (10%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDL 69
            L  L L+ N         +G LT+L  L LS N     +++      + +L+ + + D 
Sbjct: 288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN-----HITD--IRPLASLSKMDSADF 340

Query: 70  SFNNLE 75
           +   ++
Sbjct: 341 ANQVIK 346

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 56.3 bits (135), Expect = 1e-09
 Identities = 37/196 (18%), Positives = 71/196 (36%), Gaps = 43/196 (21%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSIQTLD 68
             +  +L   +    +      L S+  +  + + I  +Q +          L ++  L 
Sbjct: 22  ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ--------YLPNVTKLF 71

Query: 69  LSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTE---- 124
           L+ N L   I      L  L  +FL     N+ I  + ++     L  L+ L +      
Sbjct: 72  LNGNKLT-DI-KPLTNLKNLGWLFLDE---NK-IKDLSSLKD---LKKLKSLSLEHNGIS 122

Query: 125 -----WQLSSLDSVNLSNNTLFGSLFEIH-FAKLSKLKYFDVSQNSLTLNVSPDWIPPFQ 178
                  L  L+S+ L NN     + +I   ++L+KL    +  N ++ ++ P       
Sbjct: 123 DINGLVHLPQLESLYLGNN----KITDITVLSRLTKLDTLSLEDNQIS-DIVP------- 170

Query: 179 LKEL-NLESCNLVGNR 193
           L  L  L++  L  N 
Sbjct: 171 LAGLTKLQNLYLSKNH 186

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.1 bits (106), Expect = 6e-06
 Identities = 41/191 (21%), Positives = 65/191 (34%), Gaps = 42/191 (21%)

Query: 10  HLVFLDLSLNNFQGPIPR--GLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSIQT 66
           +L +L L  N     I     L +L  L+ L L  N IS +  L         +L  +++
Sbjct: 88  NLGWLFLDENK----IKDLSSLKDLKKLKSLSLEHNGISDINGLV--------HLPQLES 135

Query: 67  LDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQ 126
           L L  N +   I T   RL KL ++ L     NQ IS I+ +                  
Sbjct: 136 LYLGNNKIT-DI-TVLSRLTKLDTLSLED---NQ-ISDIVPLAG---------------- 173

Query: 127 LSSLDSVNLSNNTLFGSLFEIH-FAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLE 185
           L+ L ++ LS N     + ++   A L  L   ++                     +   
Sbjct: 174 LTKLQNLYLSKN----HISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 229

Query: 186 SCNLVGNRFPS 196
             +LV     S
Sbjct: 230 DGSLVTPEIIS 240

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.1 bits (128), Expect = 7e-09
 Identities = 41/201 (20%), Positives = 75/201 (37%), Gaps = 30/201 (14%)

Query: 6   GLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSI 64
            L      LDLS N  +        +   L+ LDLS   I  ++   G +     +L+ +
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE--DGAYQ----SLSHL 78

Query: 65  QTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTE 124
            TL L+ N ++     +F  L  L+ +          +           L  L+ L +  
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVA-VETNLASLEN--FPIG--HLKTLKELNVAH 133

Query: 125 WQLSS------------LDSVNLSNNTLFGSLFEIHFAKLSKLKYF----DVSQNSLTLN 168
             + S            L+ ++LS+N +  S++      L ++       D+S N +   
Sbjct: 134 NLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMN-F 191

Query: 169 VSPDWIPPFQLKELNLESCNL 189
           + P      +LKEL L++  L
Sbjct: 192 IQPGAFKEIRLKELALDTNQL 212

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 17/140 (12%)

Query: 10  HLVFLDLSLNNFQGPIPRGL-GNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSIQTL 67
            L  L     N    +     G+L +L+ L+++ N I   + L   FS    NLT+++ L
Sbjct: 101 SLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFK-LPEYFS----NLTNLEHL 154

Query: 68  DLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKI-LNIFSTCILDGLE-------- 118
           DLS N ++    T    L ++  + LS       ++ I    F    L  L         
Sbjct: 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS 214

Query: 119 VLEMTEWQLSSLDSVNLSNN 138
           V +    +L+SL  + L  N
Sbjct: 215 VPDGIFDRLTSLQKIWLHTN 234

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 47/187 (25%), Positives = 72/187 (38%), Gaps = 34/187 (18%)

Query: 6   GLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSI 64
            L      LDL  N           NL +L  L L  N IS +    G F+     L  +
Sbjct: 49  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS--PGAFA----PLVKL 102

Query: 65  QTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKIL-NIFSTCILDGLEVLEMT 123
           + L LS N L+         L +LR   +     N+ I+K+  ++F+             
Sbjct: 103 ERLYLSKNQLKELPEKMPKTLQELR---VHE---NE-ITKVRKSVFN------------- 142

Query: 124 EWQLSSLDSVNLSNNTLFGSLFEIH-FAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKEL 182
              L+ +  V L  N L  S  E   F  + KL Y  ++  ++T    P  +PP  L EL
Sbjct: 143 --GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT--TIPQGLPP-SLTEL 197

Query: 183 NLESCNL 189
           +L+   +
Sbjct: 198 HLDGNKI 204

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 33/191 (17%), Positives = 62/191 (32%), Gaps = 39/191 (20%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSIQTLD 68
            L ++ ++  N    IP+GL    SL  L L  N I+ +   + +       L ++  L 
Sbjct: 172 KLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKVD--AASLK----GLNNLAKLG 222

Query: 69  LSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLS 128
           LSFN++      S      LR + L+++                    L  +        
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNNK-------------------LVKVPGGLADHK 263

Query: 129 SLDSVNLSNN---TLFGSLF--EIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKEL- 182
            +  V L NN    +  + F    +  K +      +  N +        I P   + + 
Sbjct: 264 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY----WEIQPSTFRCVY 319

Query: 183 NLESCNLVGNR 193
              +  L   +
Sbjct: 320 VRAAVQLGNYK 330

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.9 bits (124), Expect = 3e-08
 Identities = 33/181 (18%), Positives = 62/181 (34%), Gaps = 29/181 (16%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSIQTLD 68
           +   +    +  +      L +   +  L+L+   I  +   +  F+       +IQ L 
Sbjct: 52  NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID--TYAFA----YAHTIQKLY 105

Query: 69  LSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLS 128
           + FN +       F  +  L  + L   N    + +   IF                   
Sbjct: 106 MGFNAIRYLPPHVFQNVPLLTVLVLER-NDLSSLPR--GIFH---------------NTP 147

Query: 129 SLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCN 188
            L ++++SNN L   + +  F   + L+   +S N LT +V    IP   L   N+    
Sbjct: 148 KLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIP--SLFHANVSYNL 203

Query: 189 L 189
           L
Sbjct: 204 L 204

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 50.7 bits (121), Expect = 8e-08
 Identities = 33/190 (17%), Positives = 67/190 (35%), Gaps = 36/190 (18%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGN 60
             +      +  L+L+    +           +++ L +  N I  L      F     N
Sbjct: 68  AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP--PHVFQ----N 121

Query: 61  LTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKI-LNIFSTCILDGLEV 119
           +  +  L L  N+L       F    KL ++ +S+   N  + +I  + F          
Sbjct: 122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN---NN-LERIEDDTFQ--------- 168

Query: 120 LEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQL 179
                   +SL ++ LS+N     L  +  + +  L + +VS N L+         P  +
Sbjct: 169 ------ATTSLQNLQLSSN----RLTHVDLSLIPSLFHANVSYNLLS-----TLAIPIAV 213

Query: 180 KELNLESCNL 189
           +EL+    ++
Sbjct: 214 EELDASHNSI 223

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.8 bits (116), Expect = 4e-07
 Identities = 39/208 (18%), Positives = 77/208 (37%), Gaps = 43/208 (20%)

Query: 5   FGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQ----------YLSG- 52
             L   L   ++S N         L    ++  LD S N I++++           L   
Sbjct: 188 LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHN 242

Query: 53  --TFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFS 110
             T ++ + N   +  +DLS+N LE  +   F ++ +L  +++S+   N+          
Sbjct: 243 NLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN---NR---------- 289

Query: 111 TCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVS 170
                 L  L +    + +L  ++LS+N L     E +  +  +L+   +  NS+   + 
Sbjct: 290 ------LVALNLYGQPIPTLKVLDLSHNHL--LHVERNQPQFDRLENLYLDHNSIV-TLK 340

Query: 171 PDWIPPFQLKELNLESCNLVGNRFPSWL 198
                   LK L L   +   N   +  
Sbjct: 341 LSTHH--TLKNLTLSHNDWDCNSLRALF 366

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 47.6 bits (113), Expect = 1e-06
 Identities = 41/202 (20%), Positives = 81/202 (40%), Gaps = 35/202 (17%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQ----------YLSGTFSSSV 58
            L  L +S NN +          TSL+ L LS+N ++ +            +S    S++
Sbjct: 148 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL 207

Query: 59  GNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLE 118
               +++ LD S N++            +L  + L H N   + + +LN        GL 
Sbjct: 208 AIPIAVEELDASHNSIN---VVRGPVNVELTILKLQH-NNLTDTAWLLN------YPGLV 257

Query: 119 VLEMTE-----------WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTL 167
            ++++             ++  L+ + +SNN L      ++   +  LK  D+S N L  
Sbjct: 258 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRL--VALNLYGQPIPTLKVLDLSHNHLL- 314

Query: 168 NVSPDWIPPFQLKELNLESCNL 189
           +V  +     +L+ L L+  ++
Sbjct: 315 HVERNQPQFDRLENLYLDHNSI 336

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.7 bits (122), Expect = 3e-08
 Identities = 27/157 (17%), Positives = 58/157 (36%), Gaps = 29/157 (18%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDL 69
           ++  L ++  +     P  +  L++L  L +         ++     ++  LTS+  LD+
Sbjct: 67  NIKDLTINNIHATNYNP--ISGLSNLERLRIMGK-----DVTSDKIPNLSGLTSLTLLDI 119

Query: 70  SFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSS 129
           S +  +  I T    L K+ S+ LS+   N  I+ I+ + +                L  
Sbjct: 120 SHSAHDDSILTKINTLPKVNSIDLSY---NGAITDIMPLKT----------------LPE 160

Query: 130 LDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT 166
           L S+N+  + +    +        KL        ++ 
Sbjct: 161 LKSLNIQFDGV--HDYR-GIEDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.5 bits (111), Expect = 9e-07
 Identities = 23/160 (14%), Positives = 59/160 (36%), Gaps = 33/160 (20%)

Query: 9   DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSIQTL 67
           + L ++ L+  N       G+    +++ L ++    +    +S         L++++ L
Sbjct: 44  NSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHATNYNPIS--------GLSNLERL 93

Query: 68  DLSFNNLEGKIATSFGRLCKLRSVFLSHSNM-NQEISKILNIFSTCILDGLEVLEMTEWQ 126
            +   ++      +   L  L  + +SHS   +  ++KI                     
Sbjct: 94  RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT------------------- 134

Query: 127 LSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT 166
           L  ++S++LS N     +  +    L +LK  ++  + + 
Sbjct: 135 LPKVNSIDLSYNGAITDIMPL--KTLPELKSLNIQFDGVH 172

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.1 bits (125), Expect = 3e-08
 Identities = 33/162 (20%), Positives = 58/162 (35%), Gaps = 24/162 (14%)

Query: 7   LSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQT 66
           L  H+ ++DLSLN+           L  L++L +      L   + TF      L+S+  
Sbjct: 28  LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR----GLSSLII 83

Query: 67  LDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKIL--NIFSTCILDGLEVLEMTE 124
           L L +N        +F  L  L  + L+          +L  N F               
Sbjct: 84  LKLDYNQFLQLETGAFNGLANLEVLTLTQ---CNLDGAVLSGNFFK-------------- 126

Query: 125 WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT 166
             L+SL+ + L +N +        F  + +    D++ N + 
Sbjct: 127 -PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 46/224 (20%), Positives = 83/224 (37%), Gaps = 31/224 (13%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQGPIPRGL-GNLTSLRYLDLSANISILQYLSGTFSSSVGN 60
              F     L FL +        I       L+SL  L L  N   LQ  +G F+     
Sbjct: 47  ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFN----G 101

Query: 61  LTSIQTLDLSFNNLEGKI--ATSFGRLCKLRSVFLSHSNMNQEIS-----------KILN 107
           L +++ L L+  NL+G +     F  L  L  + L  +N+ ++I             +L+
Sbjct: 102 LANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI-KKIQPASFFLNMRRFHVLD 160

Query: 108 -----IFSTC--ILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDV 160
                + S C   L   +    T  +LSS+   +++     G     +  K + +   D+
Sbjct: 161 LTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW-LGWEKCGNPFKNTSITTLDL 219

Query: 161 SQNSLTLNVSP---DWIPPFQLKELNLESCNLVGNRFPSWLLSQ 201
           S N    +++    D I   +++ L L +   +G+ F       
Sbjct: 220 SGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 32/168 (19%), Positives = 60/168 (35%), Gaps = 9/168 (5%)

Query: 4   VFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVG---- 59
            F        LDL+ N  +      L N     +  L  +   LQ ++  +         
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208

Query: 60  -NLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLE 118
              TSI TLDLS N  +  +A  F        +    S +      + + F        +
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKI---QSLILSNSYNMGSSFGHTNFKDPD 265

Query: 119 VLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT 166
                  + S + + +LS + +F +L +  F+  + L+   ++QN + 
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN 312

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 35/157 (22%), Positives = 56/157 (35%), Gaps = 26/157 (16%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSIQTLD 68
            +   DLS +     +     + T L  L L+ N I+ +      F      LT +  L+
Sbjct: 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID--DNAFW----GLTHLLKLN 329

Query: 69  LSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLS 128
           LS N L    +  F  L KL  + LS+   N      +         G          L 
Sbjct: 330 LSQNFLGSIDSRMFENLDKLEVLDLSY---NH-----IRALGDQSFLG----------LP 371

Query: 129 SLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSL 165
           +L  + L  N L  S+ +  F +L+ L+   +  N  
Sbjct: 372 NLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 35/160 (21%), Positives = 57/160 (35%), Gaps = 28/160 (17%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNL--TSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSIQT 66
           + +       NF+ P       L  + ++  DLS + I  L      FS    + T ++ 
Sbjct: 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL--KSVFS----HFTDLEQ 303

Query: 67  LDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQ 126
           L L+ N +      +F  L  L  + LS  N    I     +F                 
Sbjct: 304 LTLAQNEINKIDDNAFWGLTHLLKLNLSQ-NFLGSIDS--RMFE---------------N 345

Query: 127 LSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT 166
           L  L+ ++LS N +  +L +  F  L  LK   +  N L 
Sbjct: 346 LDKLEVLDLSYNHI-RALGDQSFLGLPNLKELALDTNQLK 384

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.5 bits (124), Expect = 3e-08
 Identities = 39/193 (20%), Positives = 67/193 (34%), Gaps = 42/193 (21%)

Query: 11  LVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSIQTLDL 69
           L  L  + N      P  LG LT+L  L L+ N +  +         ++ +LT++  LDL
Sbjct: 201 LESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--------GTLASLTNLTDLDL 250

Query: 70  SFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTE----- 124
           + N +          L KL  + L  +     IS I  +     L  L  LE+ E     
Sbjct: 251 ANNQISNLAP--LSGLTKLTELKLGANQ----ISNISPLAG---LTALTNLELNENQLED 301

Query: 125 ----WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPF--- 177
                 L +L  + L  N +         + L+KL+      N ++       +      
Sbjct: 302 ISPISNLKNLTYLTLYFNNISDI---SPVSSLTKLQRLFFYNNKVS------DVSSLANL 352

Query: 178 -QLKELNLESCNL 189
             +  L+     +
Sbjct: 353 TNINWLSAGHNQI 365

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 42/203 (20%), Positives = 75/203 (36%), Gaps = 39/203 (19%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSG--------------TFS 55
           +L  L+LS N         L  LTSL+ L     ++ L+ L+               +  
Sbjct: 135 NLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI 192

Query: 56  SSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILD 115
           S +  LT++++L  + N +        G L  L  + L+ +     +  I  + S   L 
Sbjct: 193 SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ----LKDIGTLAS---LT 243

Query: 116 GLEVLEMTE---------WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT 166
            L  L++             L+ L  + L  N +         A L+ L   ++++N L 
Sbjct: 244 NLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNI---SPLAGLTALTNLELNENQLE 300

Query: 167 LNVSPDWIPPFQLKELNLESCNL 189
            ++SP       L  L L   N+
Sbjct: 301 -DISPISNLK-NLTYLTLYFNNI 321

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.0 bits (115), Expect = 6e-07
 Identities = 31/186 (16%), Positives = 64/186 (34%), Gaps = 37/186 (19%)

Query: 16  LSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSIQTLDLSFNNL 74
           L  +        G+  L +L  ++ S N ++ +        + + NLT +  + ++ N +
Sbjct: 51  LQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI--------TPLKNLTKLVDILMNNNQI 102

Query: 75  EGKIATSFGRLCKLRSVFLSHSNMNQEISKILN-------IFSTCILDGLEVLEMTEWQL 127
                     L  L  + L + N   +I  + N         S+  +  +  L      L
Sbjct: 103 ADITP--LANLTNLTGLTLFN-NQITDIDPLKNLTNLNRLELSSNTISDISALS----GL 155

Query: 128 SSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPF----QLKELN 183
           +SL  ++  N            A L+ L+  D+S N ++       I        L+ L 
Sbjct: 156 TSLQQLSFGNQ----VTDLKPLANLTTLERLDISSNKVSD------ISVLAKLTNLESLI 205

Query: 184 LESCNL 189
             +  +
Sbjct: 206 ATNNQI 211

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 32/165 (19%), Positives = 58/165 (35%), Gaps = 35/165 (21%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDL 69
            L  L+L+ N  +   P  + NL +L YL L  N      +S    S V +LT +Q L  
Sbjct: 288 ALTNLELNENQLEDISP--ISNLKNLTYLTLYFN-----NISD--ISPVSSLTKLQRLFF 338

Query: 70  SFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSS 129
             N +     +S   L  +  +   H   NQ IS +  +                  L+ 
Sbjct: 339 YNNKVSD--VSSLANLTNINWLSAGH---NQ-ISDLTPLA----------------NLTR 376

Query: 130 LDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWI 174
           +  + L++     +         + +   +  +N     ++P  I
Sbjct: 377 ITQLGLNDQAWTNAPVNY----KANVSIPNTVKNVTGALIAPATI 417

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 27/166 (16%), Positives = 47/166 (28%), Gaps = 42/166 (25%)

Query: 28  GLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCK 87
               L       L          + T + S  +L  + TL      +  K       L  
Sbjct: 19  TDTALAEKMKTVLGKT-------NVTDTVSQTDLDQVTTLQADRLGI--KSIDGVEYLNN 69

Query: 88  LRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEI 147
           L  +  S++     ++ I  +                  L+ L  + ++NN +       
Sbjct: 70  LTQINFSNNQ----LTDITPLK----------------NLTKLVDILMNNNQIADI---T 106

Query: 148 HFAKLSKLKYFDVSQNSLTLNVSPDWIPPF----QLKELNLESCNL 189
             A L+ L    +  N +T       I P      L  L L S  +
Sbjct: 107 PLANLTNLTGLTLFNNQITD------IDPLKNLTNLNRLELSSNTI 146

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 24/126 (19%), Positives = 38/126 (30%), Gaps = 18/126 (14%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSIQTLD 68
            L  L    N         L NLT++ +L    N IS L        + + NLT I  L 
Sbjct: 332 KLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDL--------TPLANLTRITQLG 381

Query: 69  LSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLS 128
           L+              +    +V     N+   +     I            ++T    S
Sbjct: 382 LNDQAWTNAPVNYKANVSIPNTV----KNVTGALIAPATISD---GGSYTEPDITWNLPS 434

Query: 129 SLDSVN 134
             + V+
Sbjct: 435 YTNEVS 440

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.8 bits (122), Expect = 5e-08
 Identities = 33/190 (17%), Positives = 67/190 (35%), Gaps = 36/190 (18%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGN 60
             +      +  L+L+    +           +++ L +  N I  L      F     N
Sbjct: 62  AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP--PHVFQ----N 115

Query: 61  LTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKI-LNIFSTCILDGLEV 119
           +  +  L L  N+L       F    KL ++ +S+   N  + +I  + F          
Sbjct: 116 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN---NN-LERIEDDTFQ--------- 162

Query: 120 LEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQL 179
                   +SL ++ LS+N     L  +  + +  L + +VS N L+         P  +
Sbjct: 163 ------ATTSLQNLQLSSN----RLTHVDLSLIPSLFHANVSYNLLS-----TLAIPIAV 207

Query: 180 KELNLESCNL 189
           +EL+    ++
Sbjct: 208 EELDASHNSI 217

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 39/208 (18%), Positives = 77/208 (37%), Gaps = 43/208 (20%)

Query: 5   FGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQ----------YLSG- 52
             L   L   ++S N         L    ++  LD S N I++++           L   
Sbjct: 182 LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHN 236

Query: 53  --TFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFS 110
             T ++ + N   +  +DLS+N LE  +   F ++ +L  +++S+   N+          
Sbjct: 237 NLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN---NR---------- 283

Query: 111 TCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVS 170
                 L  L +    + +L  ++LS+N L     E +  +  +L+   +  NS+   + 
Sbjct: 284 ------LVALNLYGQPIPTLKVLDLSHNHL--LHVERNQPQFDRLENLYLDHNSIV-TLK 334

Query: 171 PDWIPPFQLKELNLESCNLVGNRFPSWL 198
                   LK L L   +   N   +  
Sbjct: 335 LSTHH--TLKNLTLSHNDWDCNSLRALF 360

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 33/197 (16%), Positives = 74/197 (37%), Gaps = 29/197 (14%)

Query: 7   LSDHLVFLDLSLNNFQGPIPRGL--GNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTS 63
           L    VF D+ ++     +  G     L + + +    + +  L       ++ + +   
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLP------AALLDSFRQ 70

Query: 64  IQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMT 123
           ++ L+L+   +E     +F     ++ +++   N  + +    ++F    +  L VL + 
Sbjct: 71  VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF-NAIRYLPP--HVFQN--VPLLTVLVLE 125

Query: 124 E-----------WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPD 172
                            L ++++SNN L   + +  F   + L+   +S N LT +V   
Sbjct: 126 RNDLSSLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLT-HVDLS 183

Query: 173 WIPPFQLKELNLESCNL 189
            IP   L   N+    L
Sbjct: 184 LIP--SLFHANVSYNLL 198

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 29/177 (16%), Positives = 52/177 (29%), Gaps = 24/177 (13%)

Query: 25  IPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGR 84
           I   L        + +      +      F      L + + +    + +    A     
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDV-----YFGFEDITLNNQKIVTFKNSTMRKLPAALLDS 67

Query: 85  LCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTE-----------WQLSSLDSV 133
             ++  + L+   + +EI      F+      ++ L M               +  L  +
Sbjct: 68  FRQVELLNLNDLQI-EEIDT--YAFAY--AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122

Query: 134 NLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPF-QLKELNLESCNL 189
            L  N L  SL    F    KL    +S N+L   +  D       L+ L L S  L
Sbjct: 123 VLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRL 177

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 45/188 (23%), Positives = 71/188 (37%), Gaps = 27/188 (14%)

Query: 7   LSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQT 66
           L   L  L ++  +        +    +L  LDLS N   L       +       ++Q 
Sbjct: 147 LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDN-PELGERGLISALCPLKFPTLQV 205

Query: 67  LDLSFNNLE---GKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMT 123
           L L    +E   G  +       +L+ + LSH++                L         
Sbjct: 206 LALRNAGMETPSGVCSALAAARVQLQGLDLSHNS----------------LRDAAGAPSC 249

Query: 124 EWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELN 183
           +W  S L+S+NLS   L   + +   AKLS L   D+S N L  N SPD +P  Q+  L+
Sbjct: 250 DW-PSQLNSLNLSFTGL-KQVPKGLPAKLSVL---DLSYNRLDRNPSPDELP--QVGNLS 302

Query: 184 LESCNLVG 191
           L+    + 
Sbjct: 303 LKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.0 bits (114), Expect = 4e-07
 Identities = 38/207 (18%), Positives = 65/207 (31%), Gaps = 21/207 (10%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLT--SLRYLDLSANISILQYLSGTFSSSVGNLTSIQTL 67
            L  L L      G  P  L   T   L  L+L  N+S     +            ++ L
Sbjct: 96  GLQELTLENLEVTGTAPPPLLEATGPDLNILNLR-NVSWATRDAWLAELQQWLKPGLKVL 154

Query: 68  DLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQL 127
            ++  +              L ++ LS  N       +++         L+VL +    +
Sbjct: 155 SIAQAHSLNFSCEQVRVFPALSTLDLSD-NPELGERGLISALCPLKFPTLQVLALRNAGM 213

Query: 128 SSLDSV--------------NLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDW 173
            +   V              +LS+N+L  +         S+L   ++S   L     P  
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK--QVPKG 271

Query: 174 IPPFQLKELNLESCNLVGNRFPSWLLS 200
           +P  +L  L+L    L  N  P  L  
Sbjct: 272 LPA-KLSVLDLSYNRLDRNPSPDELPQ 297

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 38.3 bits (89), Expect = 8e-04
 Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 11/96 (11%)

Query: 1   MPWVFGLSDHLVFLDLSLNNFQG-PIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVG 59
              +      L  LDLS N+ +           + L  L+LS    + Q   G  +    
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGLPAK--- 275

Query: 60  NLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSH 95
               +  LDLS+N L+     S   L ++ ++ L  
Sbjct: 276 ----LSVLDLSYNRLDRN--PSPDELPQVGNLSLKG 305

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.7 bits (116), Expect = 3e-07
 Identities = 43/206 (20%), Positives = 65/206 (31%), Gaps = 40/206 (19%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-----ISILQYLS------GTFSSSV 58
            L  L++S N     +P     L  L              S L  L        +     
Sbjct: 82  ELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLP 140

Query: 59  GNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEIS--KILNIFSTCI--- 113
             L     L +S N L   +      LCKL +     +++    S  + L++    +   
Sbjct: 141 PGLQE---LSVSDNQLA-SLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASL 196

Query: 114 ---LDGLEVLEMTEWQLSSLDS-------VNLSNNTLFGSLFEIHFAKLSKLKYFDVSQN 163
                 L  L     +L+SL +       + +S N L  SL        S+LK   VS N
Sbjct: 197 PTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRL-TSLPV----LPSELKELMVSGN 251

Query: 164 SLTLNVSPDWIPPFQLKELNLESCNL 189
            LT    P       L  L++    L
Sbjct: 252 RLT--SLPMLPS--GLLSLSVYRNQL 273

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.9 bits (106), Expect = 8e-06
 Identities = 34/185 (18%), Positives = 62/185 (33%), Gaps = 31/185 (16%)

Query: 7   LSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQT 66
           L++    L++  +     +P  L     +  L +  N   L  L             ++T
Sbjct: 38  LNNGNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNN--LTSLPA-------LPPELRT 85

Query: 67  LDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQ 126
           L++S N L   +      L +L       +++              +  GL  L +   Q
Sbjct: 86  LEVSGNQLT-SLPVLPPGLLELSIFSNPLTHL------------PALPSGLCKLWIFGNQ 132

Query: 127 LSSLDSV--NLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNL 184
           L+SL  +   L   ++  +      A  S+L       N LT    P       L+EL++
Sbjct: 133 LTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLT--SLPMLPS--GLQELSV 188

Query: 185 ESCNL 189
               L
Sbjct: 189 SDNQL 193

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 40/185 (21%), Positives = 60/185 (32%), Gaps = 28/185 (15%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNL 61
                    L  L+L        +    G L  L  LDLS N   LQ L          L
Sbjct: 48  LATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGTLDLSHNQ--LQSLPLLGQ----TL 99

Query: 62  TSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLE 121
            ++  LD+SFN L      +   L +L+ ++L     N+     L      +L       
Sbjct: 100 PALTVLDVSFNRLTSLPLGALRGLGELQELYLKG---NE-----LKTLPPGLLTPT---- 147

Query: 122 MTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKE 181
                   L+ ++L+NN L   L       L  L    + +NSL   +   +     L  
Sbjct: 148 ------PKLEKLSLANNNL-TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPF 199

Query: 182 LNLES 186
             L  
Sbjct: 200 AFLHG 204

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 32/144 (22%), Positives = 52/144 (36%), Gaps = 30/144 (20%)

Query: 62  TSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLE 121
                L LS N L      +     +L  + L      +     L +  T  L  L  L+
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR---AELTK--LQVDGT--LPVLGTLD 83

Query: 122 MTEWQLSSLDSV----------NLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSP 171
           ++  QL SL  +          ++S N L  SL       L +L+   +  N L      
Sbjct: 84  LSHNQLQSLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYLKGNELKT---- 138

Query: 172 DWIPP--F----QLKELNLESCNL 189
             +PP       +L++L+L + NL
Sbjct: 139 --LPPGLLTPTPKLEKLSLANNNL 160

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 47.3 bits (113), Expect = 7e-07
 Identities = 46/186 (24%), Positives = 68/186 (36%), Gaps = 33/186 (17%)

Query: 6   GLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSI 64
            +S     LDL  N+           L  L  L L  N IS +      FS     L  +
Sbjct: 51  EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH--EKAFS----PLRKL 104

Query: 65  QTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKIL-NIFSTCILDGLEVLEMT 123
           Q L +S N+L          L +LR   +     N+ I K+   +FS             
Sbjct: 105 QKLYISKNHLVEIPPNLPSSLVELR---IHD---NR-IRKVPKGVFS------------- 144

Query: 124 EWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELN 183
              L +++ + +  N L  S FE       KL Y  +S+  LT  +  D   P  L EL+
Sbjct: 145 --GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLNELH 199

Query: 184 LESCNL 189
           L+   +
Sbjct: 200 LDHNKI 205

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 34/186 (18%), Positives = 63/186 (33%), Gaps = 36/186 (19%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSIQTLD 68
           HL  +  S    +  +P+ +        LDL  N IS L+     F      L  +  L 
Sbjct: 34  HLRVVQCSDLGLKA-VPKEIS--PDTTLLDLQNNDISELR--KDDFK----GLQHLYALV 84

Query: 69  LSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLS 128
           L  N +      +F  L KL+ +++S +++              I   L          S
Sbjct: 85  LVNNKISKIHEKAFSPLRKLQKLYISKNHL------------VEIPPNL---------PS 123

Query: 129 SLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCN 188
           SL  + + +N +   + +  F+ L  +   ++  N L  +       P     L L    
Sbjct: 124 SLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENS----GFEPGAFDGLKLNYLR 178

Query: 189 LVGNRF 194
           +   + 
Sbjct: 179 ISEAKL 184

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.6 bits (106), Expect = 7e-06
 Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 4/89 (4%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSIQTLD 68
            L  L L  N     +P GL +L  L+ + L  N I+ +                   + 
Sbjct: 242 TLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGIS 300

Query: 69  LSFNNLEGKI--ATSFGRLCKLRSVFLSH 95
           L  N +        +F  +    ++   +
Sbjct: 301 LFNNPVPYWEVQPATFRCVTDRLAIQFGN 329

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 30/174 (17%), Positives = 57/174 (32%), Gaps = 38/174 (21%)

Query: 11  LVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSIQTLDL 69
           L +L +S     G IP+ L    +L  L L  N I  ++             + +  L L
Sbjct: 174 LNYLRISEAKLTG-IPKDL--PETLNELHLDHNKIQAIE--LEDLL----RYSKLYRLGL 224

Query: 70  SFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVL--------- 120
             N +      S   L  LR + L +   N+ +S++        L  L+V+         
Sbjct: 225 GHNQIRMIENGSLSFLPTLRELHLDN---NK-LSRVPAGLPD--LKLLQVVYLHTNNITK 278

Query: 121 --------EMTEWQLSSLDSVNLSNNTLFGSLFEIH---FAKLSKLKYFDVSQN 163
                        + +  + ++L NN +    +E+    F  ++          
Sbjct: 279 VGVNDFCPVGFGVKRAYYNGISLFNNPV--PYWEVQPATFRCVTDRLAIQFGNY 330

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.0 bits (111), Expect = 1e-06
 Identities = 10/74 (13%), Positives = 22/74 (29%), Gaps = 4/74 (5%)

Query: 25 IPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGR 84
              L    +L  L +     +              L  ++ L +  + L      +F  
Sbjct: 23 SLHHLPGAENLTELYIENQQHLQHLELRDLR----GLGELRNLTIVKSGLRFVAPDAFHF 78

Query: 85 LCKLRSVFLSHSNM 98
            +L  + LS + +
Sbjct: 79 TPRLSRLNLSFNAL 92

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 26/169 (15%), Positives = 59/169 (34%), Gaps = 18/169 (10%)

Query: 10  HLVFLDLSLNNFQGPIPRGL-GNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLD 68
           ++  + +S++     +      NL+ + ++++    ++              L  ++ L 
Sbjct: 56  NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALK----ELPLLKFLG 111

Query: 69  LSFNNLEG-KIATSFGRLCKLRSVFLSHSNMNQEISKILNIFS-----TCILD----GLE 118
           +    L+     T          + ++ +     I    N F      T  L     G  
Sbjct: 112 IFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV--NAFQGLCNETLTLKLYNNGFT 169

Query: 119 VLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKL-SKLKYFDVSQNSLT 166
            ++   +  + LD+V L+ N     + +  F  + S     DVSQ S+T
Sbjct: 170 SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 46.7 bits (110), Expect = 2e-06
 Identities = 24/104 (23%), Positives = 36/104 (34%), Gaps = 12/104 (11%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDL 69
            +  LDLS N  +  +P  L  L  L  L  S N   L+ + G     V NL  +Q L L
Sbjct: 464 LVTHLDLSHNRLRA-LPPALAALRCLEVLQASDN--ALENVDG-----VANLPRLQELLL 515

Query: 70  SFNNLEG-KIATSFGRLCKLRSVFLSH---SNMNQEISKILNIF 109
             N L+            +L  + L             ++  + 
Sbjct: 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 559

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 44.4 bits (104), Expect = 1e-05
 Identities = 25/126 (19%), Positives = 45/126 (35%), Gaps = 27/126 (21%)

Query: 13  FLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFN 72
            L L+  +    +   L  L  + +LDLS N      L      ++  L  ++ L  S N
Sbjct: 445 VLHLAHKDLT--VLCHLEQLLLVTHLDLSHN-----RLR-ALPPALAALRCLEVLQASDN 496

Query: 73  NLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDS 132
            LE  +      L +L+ + L +   N+ + +            ++ L         L  
Sbjct: 497 ALE-NVD-GVANLPRLQELLLCN---NR-LQQ---------SAAIQPLV----SCPRLVL 537

Query: 133 VNLSNN 138
           +NL  N
Sbjct: 538 LNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 39.0 bits (90), Expect = 7e-04
 Identities = 25/165 (15%), Positives = 51/165 (30%), Gaps = 30/165 (18%)

Query: 29  LGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL 88
              L ++  +  +    +        S        ++ L L+  +L   +     +L  +
Sbjct: 408 FSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLC-HLEQLLLV 465

Query: 89  RSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIH 148
             + LSH   N+ +  +    +                L  L+ +  S+N L  ++  + 
Sbjct: 466 THLDLSH---NR-LRALPPALA---------------ALRCLEVLQASDNALE-NVDGVA 505

Query: 149 FAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKEL-NLESCNLVGN 192
              L +L+   +  N L             L     L   NL GN
Sbjct: 506 --NLPRLQELLLCNNRLQ-----QSAAIQPLVSCPRLVLLNLQGN 543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 46/167 (27%), Positives = 65/167 (38%), Gaps = 28/167 (16%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQGPIPRGL-GNLTSLRYLDLSANISILQYL-SGTFSSSVG 59
              F     L  L L+ N  Q  +P G+   L +L  L ++ N   LQ L  G F     
Sbjct: 54  SKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNK--LQALPIGVFD---- 106

Query: 60  NLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEV 119
            L ++  L L  N L+      F  L KL  + L   N  Q + K   +F          
Sbjct: 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSL-GYNELQSLPK--GVFD--------- 154

Query: 120 LEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT 166
                 +L+SL  + L NN L   + E  F KL++LK   +  N L 
Sbjct: 155 ------KLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLK 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 9/93 (9%)

Query: 10  HLVFLDLSLNNFQGPIPRG-LGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSIQTL 67
           +L +LDLS N+    +      +L +L  L L  N I ++      F     ++  +Q L
Sbjct: 89  NLRYLDLSSNHLHT-LDEFLFSDLQALEVLLLYNNHIVVVD--RNAFE----DMAQLQKL 141

Query: 68  DLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQ 100
            LS N +            KL  + L   + N+
Sbjct: 142 YLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 45.2 bits (107), Expect = 4e-06
 Identities = 38/197 (19%), Positives = 64/197 (32%), Gaps = 61/197 (30%)

Query: 6   GLSDHLVFLDLSLNNFQGPIPRG-LGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTS 63
            L  +   LDLS NN            LT+L  L LS N ++ +   S  F      + +
Sbjct: 36  SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS--SEAFV----PVPN 89

Query: 64  IQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMT 123
           ++ LDLS N+L       F  L  L  + L +           N                
Sbjct: 90  LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYN-----------N---------------- 122

Query: 124 EWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKEL- 182
              +  +D           +     F  +++L+   +SQN ++        P   +K+  
Sbjct: 123 --HIVVVDR---------NA-----FEDMAQLQKLYLSQNQIS------RFPVELIKDGN 160

Query: 183 ---NLESCNLVGNRFPS 196
               L   +L  N+   
Sbjct: 161 KLPKLMLLDLSSNKLKK 177

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.7 bits (106), Expect = 4e-06
 Identities = 36/168 (21%), Positives = 66/168 (39%), Gaps = 33/168 (19%)

Query: 11  LVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSIQTLDL 69
            V L   +   +  +   L  L + ++L LS N I  +  LS         + +++ L L
Sbjct: 27  KVELHGMIPPIEK-MDATLSTLKACKHLALSTNNIEKISSLS--------GMENLRILSL 77

Query: 70  SFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSS 129
             N ++ KI         L  +++S+   NQ I+ +          G+E L        +
Sbjct: 78  GRNLIK-KIENLDAVADTLEELWISY---NQ-IASL---------SGIEKLV-------N 116

Query: 130 LDSVNLSNNTLFGSLFEI-HFAKLSKLKYFDVSQNSLTLNVSPDWIPP 176
           L  + +SNN +  +  EI   A L KL+   ++ N L  +   +    
Sbjct: 117 LRVLYMSNNKI-TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS 163

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 34/162 (20%), Positives = 62/162 (38%), Gaps = 42/162 (25%)

Query: 10  HLVFLDLSLNNFQGPIPR--GLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSIQT 66
               L LS NN    I +   L  + +LR L L  N I  ++ L            +++ 
Sbjct: 49  ACKHLALSTNN----IEKISSLSGMENLRILSLGRNLIKKIENLD-------AVADTLEE 97

Query: 67  LDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQ 126
           L +S+N +   + +   +L  LR +++S+   N+ I+             ++ L      
Sbjct: 98  LWISYNQIA-SL-SGIEKLVNLRVLYMSN---NK-ITN---------WGEIDKLA----A 138

Query: 127 LSSLDSVNLSNNTLFGSLFEIH---------FAKLSKLKYFD 159
           L  L+ + L+ N L+    E +           +L  LK  D
Sbjct: 139 LDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.3 bits (105), Expect = 7e-06
 Identities = 32/152 (21%), Positives = 61/152 (40%), Gaps = 28/152 (18%)

Query: 14  LDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYL-SGTFSSSVGNLTSIQTLDLSFN 72
           + L  N  +   P        LR +DLS N   +  L    F      L S+ +L L  N
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNN--QISELAPDAFQG----LRSLNSLVLYGN 90

Query: 73  NLEGKIATSFGRLCKLRSVFLSHSNMNQEISKI-LNIFSTCILDGLEVLEMTEWQLSSLD 131
            +     + F  L  L+ + L+    N+ I+ + ++ F                 L +L+
Sbjct: 91  KITELPKSLFEGLFSLQLLLLNA---NK-INCLRVDAFQD---------------LHNLN 131

Query: 132 SVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQN 163
            ++L +N L  ++ +  F+ L  ++   ++QN
Sbjct: 132 LLSLYDNKL-QTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 10/96 (10%)

Query: 4   VFGLSDHLVFLDLSLNNFQGPIPRGL-GNLTSLRYLDLSANISILQYL-SGTFSSSVGNL 61
            F     L  L L  N     +P+ L   L SL+ L L+AN   +  L    F     +L
Sbjct: 75  AFQGLRSLNSLVLYGNKITE-LPKSLFEGLFSLQLLLLNAN--KINCLRVDAFQ----DL 127

Query: 62  TSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSN 97
            ++  L L  N L+     +F  L  ++++ L   N
Sbjct: 128 HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL-AQN 162

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.9 bits (106), Expect = 7e-06
 Identities = 35/189 (18%), Positives = 65/189 (34%), Gaps = 15/189 (7%)

Query: 5   FGLSDHLVFLDLSLNNFQG-PIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTS 63
                 L  LDLS N+F   P+ +  GNLT L +L LSA     ++             S
Sbjct: 117 CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA----KFRQLDLLPVAHLHLS 172

Query: 64  IQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMT 123
              LDL   +++G    S           + H N       + ++     ++ L  L+++
Sbjct: 173 CILLDLVSYHIKGGETESLQIPNTTVLHLVFHPN------SLFSVQVNMSVNALGHLQLS 226

Query: 124 EWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELN 183
             +L+  +   L        L          L++ + +           W  P  ++ LN
Sbjct: 227 NIKLNDENCQRLMT--FLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRP--VEYLN 282

Query: 184 LESCNLVGN 192
           + +  +   
Sbjct: 283 IYNLTITER 291

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.5 bits (105), Expect = 9e-06
 Identities = 24/174 (13%), Positives = 58/174 (33%), Gaps = 18/174 (10%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNL 61
             ++ +   +    LS+++          + +S  +L+ + N+      + +       L
Sbjct: 322 EALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNV-----FTDSVFQGCSTL 376

Query: 62  TSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLE 121
             +QTL L  N L+            + S+          ++      +    + + VL 
Sbjct: 377 KRLQTLILQRNGLK-NFFKVALMTKNMSSLET-LDVSLNSLNSHAYDRTCAWAESILVLN 434

Query: 122 MTEWQLSS---------LDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT 166
           ++   L+          +  ++L NN +           L  L+  +V+ N L 
Sbjct: 435 LSSNMLTGSVFRCLPPKVKVLDLHNNRI--MSIPKDVTHLQALQELNVASNQLK 486

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 20/193 (10%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDL 69
            + +L++        I R     +      L       Q    +  +       +    L
Sbjct: 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336

Query: 70  SFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSS 129
           S ++                 +  +    N     +    ST  L  L+ L +    L +
Sbjct: 337 SISDTPFIHMVCPPSPSSFTFLNFTQ---NVFTDSVFQGCST--LKRLQTLILQRNGLKN 391

Query: 130 LDSV-------------NLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPP 176
              V             ++S N+L    ++   A    +   ++S N LT +V    +PP
Sbjct: 392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV-FRCLPP 450

Query: 177 FQLKELNLESCNL 189
            ++K L+L +  +
Sbjct: 451 -KVKVLDLHNNRI 462

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 43/207 (20%), Positives = 71/207 (34%), Gaps = 29/207 (14%)

Query: 6   GLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYL-SGTFSS-------- 56
            L      L LS N+        +  L+ LR L LS N   ++ L    F          
Sbjct: 49  DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR--IRSLDFHVFLFNQDLEYLD 106

Query: 57  ---------SVGNLTSIQTLDLSFNNLEG-KIATSFGRLCKLRSVFLSHSNM-NQEISKI 105
                    S   + S++ LDLSFN+ +   +   FG L KL  + LS +     ++  +
Sbjct: 107 VSHNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPV 166

Query: 106 LNIFSTCILDGLEVLEMTEWQLSSLDSVN-------LSNNTLFGSLFEIHFAKLSKLKYF 158
            ++  +CIL  L    +   +  SL   N          N+LF     +    L  L+  
Sbjct: 167 AHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLS 226

Query: 159 DVSQNSLTLNVSPDWIPPFQLKELNLE 185
           ++  N         ++         L 
Sbjct: 227 NIKLNDENCQRLMTFLSELTRGPTLLN 253

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 14  LDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSIQTLDLSFN 72
           L L  N F   +P+ L N   L  +DLS N IS L   + +FS    N+T + TL LS+N
Sbjct: 36  LYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLS--NQSFS----NMTQLLTLILSYN 88

Query: 73  NLEGKIATSFGRLCKLRSVFLSHSN 97
            L      +F  L  LR + L H N
Sbjct: 89  RLRCIPPRTFDGLKSLRLLSL-HGN 112

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 33/182 (18%), Positives = 64/182 (35%), Gaps = 23/182 (12%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSIQTLD 68
            L  LD   ++    +  G+  LT L  L  ++N I+ L          +   T++  L 
Sbjct: 43  TLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL---------DLSQNTNLTYLA 91

Query: 69  LSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLS 128
              N L          L KL  +    + + +       + +        + E+     +
Sbjct: 92  CDSNKLT---NLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNT 148

Query: 129 SLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT-LNVSPDWIPPFQLKELNLESC 187
            L  ++   N     + ++     ++L   D S N +T L+VS        L  LN ++ 
Sbjct: 149 QLTELDCHLNKK---ITKLDVTPQTQLTTLDCSFNKITELDVS----QNKLLNRLNCDTN 201

Query: 188 NL 189
           N+
Sbjct: 202 NI 203

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 33/182 (18%), Positives = 58/182 (31%), Gaps = 24/182 (13%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSIQTLD 68
            L  LD S N     +   +     L  L+   N I+ L          +     +  LD
Sbjct: 171 QLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---------DLNQNIQLTFLD 218

Query: 69  LSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLS 128
            S N L          L +L     S + + +     L+  +T      ++LE+     +
Sbjct: 219 CSSNKLT---EIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNT 275

Query: 129 SLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT-LNVSPDWIPPFQLKELNLESC 187
            L             + E+     ++L   D     +T L++S       +L  L L + 
Sbjct: 276 QLIYFQAEGCR---KIKELDVTHNTQLYLLDCQAAGITELDLS----QNPKLVYLYLNNT 328

Query: 188 NL 189
            L
Sbjct: 329 EL 330

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 26/168 (15%), Positives = 60/168 (35%), Gaps = 34/168 (20%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSIQTLD 68
           + + +    +N    +     +L  +  L      ++ ++ +          L ++  L+
Sbjct: 20  NAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQ--------YLNNLIGLE 69

Query: 69  LSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQ-- 126
           L  N +          L K+  + LS        + + N+ +   L  ++ L++T  Q  
Sbjct: 70  LKDNQITD--LAPLKNLTKITELELSG-------NPLKNVSAIAGLQSIKTLDLTSTQIT 120

Query: 127 -------LSSLDSVNLSNNTLFGSLFEI-HFAKLSKLKYFDVSQNSLT 166
                  LS+L  + L  N     +  I   A L+ L+Y  +    ++
Sbjct: 121 DVTPLAGLSNLQVLYLDLN----QITNISPLAGLTNLQYLSIGNAQVS 164

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 31/169 (18%), Positives = 67/169 (39%), Gaps = 32/169 (18%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSIQTLD 68
            +  L+LS N  +      +  L S++ LDL++  I+ +  L+         L+++Q L 
Sbjct: 86  KITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTPLA--------GLSNLQVLY 135

Query: 69  LSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLS 128
           L  N +     +    L  L+ + + +    Q +S +  + +   L  L  L+  + ++S
Sbjct: 136 LDLNQI--TNISPLAGLTNLQYLSIGN---AQ-VSDLTPLAN---LSKLTTLKADDNKIS 186

Query: 129 SLDSV---------NLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLN 168
            +  +         +L NN +         A  S L    ++  ++T  
Sbjct: 187 DISPLASLPNLIEVHLKNNQISD---VSPLANTSNLFIVTLTNQTITNQ 232

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 31/192 (16%), Positives = 63/192 (32%), Gaps = 34/192 (17%)

Query: 6   GLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYL-SGTFSSSV------ 58
            L  + + L   L   +            L  +++S N  +L+ + +  FS+        
Sbjct: 27  DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN-DVLEVIEADVFSNLPKLHEIR 85

Query: 59  ---------------GNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEIS 103
                           NL ++Q L +S   ++           +   + +  +     I 
Sbjct: 86  IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 145

Query: 104 KILNIFSTC-----ILD----GLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSK 154
           +  N F        IL     G++ +  + +  + LD +NLS+N     L    F   S 
Sbjct: 146 R--NSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASG 203

Query: 155 LKYFDVSQNSLT 166
               D+S+  + 
Sbjct: 204 PVILDISRTRIH 215

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 33/195 (16%), Positives = 58/195 (29%), Gaps = 34/195 (17%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN--------ISILQYLS-----GTFSS 56
            L F+    N  +      L NL  L  +    N           L+ +           
Sbjct: 174 SLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELP 231

Query: 57  SVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDG 116
            + NL  + T+    N L+    T       L ++ +  + +        +         
Sbjct: 232 ELQNLPFLTTIYADNNLLK----TLPDLPPSLEALNVRDNYLTDLPELPQS--------- 278

Query: 117 LEVLEMTEWQLSSLDSV--NLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWI 174
           L  L+++E   S L  +  NL       +           L+  +VS N L     P   
Sbjct: 279 LTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI--ELPALP 336

Query: 175 PPFQLKELNLESCNL 189
           P  +L+ L     +L
Sbjct: 337 P--RLERLIASFNHL 349

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 31/141 (21%), Positives = 54/141 (38%), Gaps = 30/141 (21%)

Query: 28  GLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLC 86
              N    R LDL    I +++ L  T       L     +D S N +  K+   F  L 
Sbjct: 14  QYTNAVRDRELDLRGYKIPVIENLGAT-------LDQFDAIDFSDNEIR-KLDG-FPLLR 64

Query: 87  KLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFE 146
           +L+++ ++++     I +I                     L  L  + L+NN+L   L +
Sbjct: 65  RLKTLLVNNNR----ICRIGEGLDQA--------------LPDLTELILTNNSL-VELGD 105

Query: 147 I-HFAKLSKLKYFDVSQNSLT 166
           +   A L  L Y  + +N +T
Sbjct: 106 LDPLASLKSLTYLCILRNPVT 126

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQGPIPRGL-GNLTSLRYLDLSANISILQYL-SGTFSSSVG 59
             VF     L  L L  N  +  +P G+   LT L+ L L+ N   LQ + +G F     
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQ--LQSIPAGAFDK--- 153

Query: 60  NLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSN 97
            LT++QTL LS N L+     +F RL KL+++ L   N
Sbjct: 154 -LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL-FGN 189

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	203
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.91
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.91
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.9
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.9
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.9
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.9
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.88
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.87
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.87
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.87
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.87
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.87
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.87
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.86
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.86
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.86
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.86
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.85
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.85
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.85
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.85
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.85
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.85
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.85
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.85
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.85
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.85
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.85
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.85
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.84
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.84
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.84
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.84
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.84
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.84
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.84
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.83
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.83
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.83
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.83
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.83
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.82
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.82
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.82
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.81
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.81
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.81
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.81
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.81
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.81
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.81
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.81
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.81
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.8
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.8
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.8
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.8
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.8
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.79
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.79
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.79
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.79
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.78
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.78
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.78
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.77
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.77
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.77
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.77
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.76
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.76
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.76
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.75
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.74
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.74
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.74
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.73
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.72
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.72
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.72
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.7
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.7
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.69
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.69
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.69
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.68
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.67
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.66
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.64
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.64
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.64
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.64
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.62
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.62
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.62
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.61
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.61
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.61
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.6
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.6
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.59
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.57
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.56
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.56
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.5
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.49
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.49
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.48
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.47
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.45
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.44
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.44
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.42
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.39
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.35
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.32
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.3
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.26
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.23
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.22
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.21
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.06
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.05
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.92
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.9
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.87
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.77
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.7
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.6
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.38
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.33
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.06
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.93
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.88
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.82
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.81
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.78
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.74
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.61
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.21
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.58

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=4.5e-24  Score=159.92  Aligned_cols=193  Identities=18%  Similarity=0.243  Sum_probs=149.3

Q ss_pred             CCcccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchh
Q 037699            1 MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIAT   80 (203)
Q Consensus         1 ~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~   80 (203)
                      +|..+..+++|++|++++|.++ .+|..++.+++|++|++++|.     +. .+|..+..+++|++|++++|.+.+.+|.
T Consensus        96 lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~-----l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~  168 (328)
T 4fcg_A           96 FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNP-----LR-ALPASIASLNRLRELSIRACPELTELPE  168 (328)
T ss_dssp             CCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCC-----CC-CCCGGGGGCTTCCEEEEEEETTCCCCCS
T ss_pred             cChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCc-----cc-cCcHHHhcCcCCCEEECCCCCCccccCh
Confidence            4555556779999999999988 788888999999999999985     55 6688888899999999999887777777


Q ss_pred             hhhc---------cCCccEEEccCCcCCcchhhhhhhcc---ccccCCcccccccc--ccCCCCCEEEccCCccccccch
Q 037699           81 SFGR---------LCKLRSVFLSHSNMNQEISKILNIFS---TCILDGLEVLEMTE--WQLSSLDSVNLSNNTLFGSLFE  146 (203)
Q Consensus        81 ~~~~---------l~~L~~L~l~~n~~~~~~~~~~~~~~---~~~~~~l~~l~~~~--~~~~~L~~L~l~~n~l~~~~~~  146 (203)
                      .+..         +++|++|++++|.+.. .|..+..+.   ...+.+.....++.  ..+++|+.|++++|.+.+..+.
T Consensus       169 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~  247 (328)
T 4fcg_A          169 PLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP  247 (328)
T ss_dssp             CSEEEC-CCCEEESTTCCEEEEEEECCCC-CCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCC
T ss_pred             hHhhccchhhhccCCCCCEEECcCCCcCc-chHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHH
Confidence            6654         8889999998888873 333332211   11111111111221  2678999999999998877766


Q ss_pred             hhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhcccC
Q 037699          147 IHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQKS  203 (203)
Q Consensus       147 ~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~~~  203 (203)
                       .+..+++|+.|++++|.+.+.+|..+..+++|++|+|++|.+ ...+|.++.++++
T Consensus       248 -~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~-~~~iP~~l~~L~~  302 (328)
T 4fcg_A          248 -IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN-LSRLPSLIAQLPA  302 (328)
T ss_dssp             -CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT-CCCCCGGGGGSCT
T ss_pred             -HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc-hhhccHHHhhccC
Confidence             688999999999999999988998899999999999999988 5789999988764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.91  E-value=3.2e-24  Score=159.79  Aligned_cols=191  Identities=25%  Similarity=0.365  Sum_probs=106.6

Q ss_pred             CcccccCCcccEEecCC-CccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchh
Q 037699            2 PWVFGLSDHLVFLDLSL-NNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIAT   80 (203)
Q Consensus         2 p~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~   80 (203)
                      |..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.     +.+..|..+..+++|++|++++|.+++..|.
T Consensus        69 ~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-----l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  143 (313)
T 1ogq_A           69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-----VSGAIPDFLSQIKTLVTLDFSYNALSGTLPP  143 (313)
T ss_dssp             CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-----CEEECCGGGGGCTTCCEEECCSSEEESCCCG
T ss_pred             ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe-----eCCcCCHHHhCCCCCCEEeCCCCccCCcCCh
Confidence            55566667788888874 77777777777777778888777775     6666677777777777777777777767777


Q ss_pred             hhhccCCccEEEccCCcCCcchhhhhhhcc----ccccCCcccc-cccc-c-cCCCCCEEEccCCccccccchhhhccCC
Q 037699           81 SFGRLCKLRSVFLSHSNMNQEISKILNIFS----TCILDGLEVL-EMTE-W-QLSSLDSVNLSNNTLFGSLFEIHFAKLS  153 (203)
Q Consensus        81 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~----~~~~~~l~~l-~~~~-~-~~~~L~~L~l~~n~l~~~~~~~~l~~~~  153 (203)
                      .+..+++|++|++++|.+.+..+..+..+.    ...+.+.... ..+. . .+. |+.|++++|.+.+..+. .+..++
T Consensus       144 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~-~~~~l~  221 (313)
T 1ogq_A          144 SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASV-LFGSDK  221 (313)
T ss_dssp             GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGG-GCCTTS
T ss_pred             HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCH-HHhcCC
Confidence            777777777777777777654444333211    1111111110 0000 0 222 55555555555433222 344445


Q ss_pred             CccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhcc
Q 037699          154 KLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQ  201 (203)
Q Consensus       154 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~  201 (203)
                      +|+.|++++|.+++.++. +..+++|++|++++|.+ ...+|.++..+
T Consensus       222 ~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l-~~~~p~~l~~l  267 (313)
T 1ogq_A          222 NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRI-YGTLPQGLTQL  267 (313)
T ss_dssp             CCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCC-EECCCGGGGGC
T ss_pred             CCCEEECCCCceeeecCc-ccccCCCCEEECcCCcc-cCcCChHHhcC
Confidence            555555555554433222 33444455555555544 22344444433

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.91  E-value=2.1e-23  Score=172.10  Aligned_cols=74  Identities=19%  Similarity=0.222  Sum_probs=55.6

Q ss_pred             CCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhccc
Q 037699          127 LSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQK  202 (203)
Q Consensus       127 ~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~~  202 (203)
                      +++|+.|++++|.+++.+|. .++.++.|+.|++++|.+++.+|..+..+++|+.|+|++|++ ...+|..+..++
T Consensus       631 l~~L~~LdLs~N~l~g~ip~-~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l-~g~ip~~l~~l~  704 (768)
T 3rgz_A          631 NGSMMFLDMSYNMLSGYIPK-EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL-DGRIPQAMSALT  704 (768)
T ss_dssp             SBCCCEEECCSSCCBSCCCG-GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC-EECCCGGGGGCC
T ss_pred             cccccEEECcCCcccccCCH-HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcc-cCcCChHHhCCC
Confidence            45677888888887766666 677788888888888888877777777777888888888887 445777776654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.90  E-value=2.8e-23  Score=155.63  Aligned_cols=184  Identities=22%  Similarity=0.232  Sum_probs=150.0

Q ss_pred             CcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCc
Q 037699            9 DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL   88 (203)
Q Consensus         9 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L   88 (203)
                      .+++.|++++|.++ .+|..+..+++|++|++++|.     +. .+|..+..+++|++|++++|.++ .+|..+..+++|
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~-----l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L  152 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG-----LM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRL  152 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSC-----CC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTC
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCC-----cc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCC
Confidence            58999999999999 788889999999999999996     55 77888999999999999999999 889999999999


Q ss_pred             cEEEccCCcCCcchhhhhhhcc----ccccCCccccc--------ccc--ccCCCCCEEEccCCccccccchhhhccCCC
Q 037699           89 RSVFLSHSNMNQEISKILNIFS----TCILDGLEVLE--------MTE--WQLSSLDSVNLSNNTLFGSLFEIHFAKLSK  154 (203)
Q Consensus        89 ~~L~l~~n~~~~~~~~~~~~~~----~~~~~~l~~l~--------~~~--~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~  154 (203)
                      ++|++++|...+..+..+....    ...+..++.+.        ++.  ..+++|+.|++++|.+. .++. .+..+++
T Consensus       153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~-~l~~l~~  230 (328)
T 4fcg_A          153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGP-AIHHLPK  230 (328)
T ss_dssp             CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCG-GGGGCTT
T ss_pred             CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCch-hhccCCC
Confidence            9999999877666554332100    00022333332        222  26789999999999996 4555 5889999


Q ss_pred             ccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhcccC
Q 037699          155 LKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQKS  203 (203)
Q Consensus       155 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~~~  203 (203)
                      |+.|++++|.+.+.++..+..+++|++|++++|.+ ...+|.++..+++
T Consensus       231 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~-~~~~p~~~~~l~~  278 (328)
T 4fcg_A          231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN-LLTLPLDIHRLTQ  278 (328)
T ss_dssp             CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTT-CCBCCTTGGGCTT
T ss_pred             CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCc-hhhcchhhhcCCC
Confidence            99999999999988999999999999999999988 5678888887753

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.90  E-value=2.2e-22  Score=145.39  Aligned_cols=160  Identities=23%  Similarity=0.264  Sum_probs=135.8

Q ss_pred             CcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCc
Q 037699            9 DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL   88 (203)
Q Consensus         9 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L   88 (203)
                      ++++.|++++|.+.+..+..+..+++|++|++++|.     +....+..+..+++|++|++++|.++...+..+..+++|
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  109 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-----LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL  109 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-----CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-----CCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCC
Confidence            478899999999987777788899999999999987     777777778889999999999999986666778888999


Q ss_pred             cEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccc
Q 037699           89 RSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLN  168 (203)
Q Consensus        89 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~  168 (203)
                      ++|++++|.+....+..+.                  .+++|+.|++++|.+. .++...+..+++|+.|++++|.+++.
T Consensus       110 ~~L~L~~N~l~~~~~~~~~------------------~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A          110 DKLYLGGNQLKSLPSGVFD------------------RLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             CEEECCSSCCCCCCTTTTT------------------TCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CEEEcCCCcCCCcChhHhc------------------cCCcccEEECcCCcCC-ccCHHHcCcCcCCCEEECCCCcCCcc
Confidence            9999999988765554443                  6789999999999996 45554788999999999999999977


Q ss_pred             cCCCCCCCCCccEEEcCCCCCCCC
Q 037699          169 VSPDWIPPFQLKELNLESCNLVGN  192 (203)
Q Consensus       169 ~~~~l~~~~~L~~L~l~~n~l~~~  192 (203)
                      .+..+..+++|+.|++++|.+.++
T Consensus       171 ~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          171 PHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CHHHHhCCCCCCEEEeeCCceeCC
Confidence            777888999999999999999655

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.90  E-value=1.6e-23  Score=155.98  Aligned_cols=170  Identities=25%  Similarity=0.360  Sum_probs=140.7

Q ss_pred             CcccEEecCCCccCC--CCCccccCCCCccEEeCCC-CcccccccccccccccCCCCCCCEEEccccccCccchhhhhcc
Q 037699            9 DHLVFLDLSLNNFQG--PIPRGLGNLTSLRYLDLSA-NISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRL   85 (203)
Q Consensus         9 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l   85 (203)
                      .+++.|++++|.+.+  .+|..+..+++|++|++++ |.     +.+..|..+..+++|++|++++|.+++..|..+..+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~-----l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l  124 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN-----LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI  124 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT-----EESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc-----ccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCC
Confidence            489999999999998  8999999999999999994 75     777889999999999999999999998899999999


Q ss_pred             CCccEEEccCCcCCcchhhhhhhccccccCCcccccc---------cc--ccCC-CCCEEEccCCccccccchhhhccCC
Q 037699           86 CKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEM---------TE--WQLS-SLDSVNLSNNTLFGSLFEIHFAKLS  153 (203)
Q Consensus        86 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~--~~~~-~L~~L~l~~n~l~~~~~~~~l~~~~  153 (203)
                      ++|++|++++|.+.+..+..+..     +.+++.+.+         +.  ..++ .|+.|++++|.+.+..+. .+..++
T Consensus       125 ~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~-~~~~l~  198 (313)
T 1ogq_A          125 KTLVTLDFSYNALSGTLPPSISS-----LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP-TFANLN  198 (313)
T ss_dssp             TTCCEEECCSSEEESCCCGGGGG-----CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG-GGGGCC
T ss_pred             CCCCEEeCCCCccCCcCChHHhc-----CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCCh-HHhCCc
Confidence            99999999999998666655543     223333322         21  1455 889999999988766665 566776


Q ss_pred             CccEEEccCCccccccCCCCCCCCCccEEEcCCCCCC
Q 037699          154 KLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLV  190 (203)
Q Consensus       154 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~  190 (203)
                       |+.|++++|.+++..+..+..+++|++|++++|.++
T Consensus       199 -L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  234 (313)
T 1ogq_A          199 -LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA  234 (313)
T ss_dssp             -CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred             -ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee
Confidence             999999999998877778888999999999999983

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.90  E-value=1.4e-22  Score=167.24  Aligned_cols=195  Identities=26%  Similarity=0.342  Sum_probs=141.8

Q ss_pred             CcccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhh
Q 037699            2 PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATS   81 (203)
Q Consensus         2 p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~   81 (203)
                      |..+..+++|+.|++++|.+++..|..+..+++|++|++++|.     +.+..|..+..+++|++|++++|.+++..|..
T Consensus       411 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~-----l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~  485 (768)
T 3rgz_A          411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM-----LEGEIPQELMYVKTLETLILDFNDLTGEIPSG  485 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC-----CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred             CHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCc-----ccCcCCHHHcCCCCceEEEecCCcccCcCCHH
Confidence            4556666677777777777777777777777777778877776     66677777777788888888888887777777


Q ss_pred             hhccCCccEEEccCCcCCcchhhhhhhccc---cccCCcccc-cccc--ccCCCCCEEEccCCccccccchhh-------
Q 037699           82 FGRLCKLRSVFLSHSNMNQEISKILNIFST---CILDGLEVL-EMTE--WQLSSLDSVNLSNNTLFGSLFEIH-------  148 (203)
Q Consensus        82 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~---~~~~~l~~l-~~~~--~~~~~L~~L~l~~n~l~~~~~~~~-------  148 (203)
                      +..+++|++|++++|.+.+..|..+..+..   ..+.+.... .++.  ..+++|+.|++++|.+.+.+|...       
T Consensus       486 l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~  565 (768)
T 3rgz_A          486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI  565 (768)
T ss_dssp             GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCB
T ss_pred             HhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchh
Confidence            888888888888888877666655443211   111111111 1221  267889999999998876655422       


Q ss_pred             --------------------------------------------------------------hccCCCccEEEccCCccc
Q 037699          149 --------------------------------------------------------------FAKLSKLKYFDVSQNSLT  166 (203)
Q Consensus       149 --------------------------------------------------------------l~~~~~L~~L~l~~n~~~  166 (203)
                                                                                    ++.+++|+.|++++|.++
T Consensus       566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~  645 (768)
T 3rgz_A          566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS  645 (768)
T ss_dssp             CCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB
T ss_pred             hhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccc
Confidence                                                                          223467889999999999


Q ss_pred             cccCCCCCCCCCccEEEcCCCCCCCCCCchhhhccc
Q 037699          167 LNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQK  202 (203)
Q Consensus       167 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~~  202 (203)
                      +.+|..+..+++|+.|+|++|.+ ...+|..+..++
T Consensus       646 g~ip~~l~~l~~L~~L~Ls~N~l-~g~ip~~l~~L~  680 (768)
T 3rgz_A          646 GYIPKEIGSMPYLFILNLGHNDI-SGSIPDEVGDLR  680 (768)
T ss_dssp             SCCCGGGGGCTTCCEEECCSSCC-CSCCCGGGGGCT
T ss_pred             ccCCHHHhccccCCEEeCcCCcc-CCCCChHHhCCC
Confidence            99999999999999999999999 557899888775

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.90  E-value=2.2e-22  Score=147.90  Aligned_cols=176  Identities=20%  Similarity=0.171  Sum_probs=116.6

Q ss_pred             CCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccc-cCccchhhhhccC
Q 037699            8 SDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNN-LEGKIATSFGRLC   86 (203)
Q Consensus         8 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~l~   86 (203)
                      .++++.|++++|.++...+..+..+++|++|++++|.     +....+..+..+++|++|++++|. ++...+..+..++
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~  105 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-----LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG  105 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-----CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCT
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-----cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCc
Confidence            3477778888877776666667777778888887775     666666677777777777777776 5544466677777


Q ss_pred             CccEEEccCCcCCcchhhhhhhc---cccccCCcccccccc---ccCCCCCEEEccCCccccccchhhhccCCCccEEEc
Q 037699           87 KLRSVFLSHSNMNQEISKILNIF---STCILDGLEVLEMTE---WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDV  160 (203)
Q Consensus        87 ~L~~L~l~~n~~~~~~~~~~~~~---~~~~~~~l~~l~~~~---~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l  160 (203)
                      +|++|++++|.+....+..+..+   ....+.+.....++.   ..+++|+.|++++|.+. ..+...+..+++|+.|++
T Consensus       106 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l  184 (285)
T 1ozn_A          106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLL  184 (285)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-ccCHHHhcCccccCEEEC
Confidence            77777777777766544433321   111111111111111   15677888888888775 444435677778888888


Q ss_pred             cCCccccccCCCCCCCCCccEEEcCCCCC
Q 037699          161 SQNSLTLNVSPDWIPPFQLKELNLESCNL  189 (203)
Q Consensus       161 ~~n~~~~~~~~~l~~~~~L~~L~l~~n~l  189 (203)
                      ++|.+++..+..+..+++|++|++++|.+
T Consensus       185 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  213 (285)
T 1ozn_A          185 HQNRVAHVHPHAFRDLGRLMTLYLFANNL  213 (285)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCcccccCHhHccCcccccEeeCCCCcC
Confidence            88887766677777777888888888877

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=1.8e-21  Score=142.00  Aligned_cols=179  Identities=23%  Similarity=0.232  Sum_probs=129.4

Q ss_pred             CcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCc
Q 037699            9 DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL   88 (203)
Q Consensus         9 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L   88 (203)
                      ++++.|++++|.++...+..+..+++|++|++++|.     +....+..+..+++|++|++++|.++...+..+..+++|
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-----l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  111 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-----LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNL  111 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-----CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSC
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-----cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCC
Confidence            478888888888886666678888888888888886     665555566788888888888888885555667888888


Q ss_pred             cEEEccCCcCCcchhhhhhhc---cccccCCcccccccc---ccCCCCCEEEccCCccccccchhhhccCCCccEEEccC
Q 037699           89 RSVFLSHSNMNQEISKILNIF---STCILDGLEVLEMTE---WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQ  162 (203)
Q Consensus        89 ~~L~l~~n~~~~~~~~~~~~~---~~~~~~~l~~l~~~~---~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~  162 (203)
                      ++|++++|.+....+..+..+   ....+.+...-.++.   ..+++|+.|++++|.+. ..+...+..+++|+.|++++
T Consensus       112 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~  190 (270)
T 2o6q_A          112 AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDN  190 (270)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCS
T ss_pred             CEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc-EeChhHhccCCCcCEEECCC
Confidence            888888888876655443321   111122111111221   15688999999999885 44444677888999999999


Q ss_pred             CccccccCCCCCCCCCccEEEcCCCCCCCCC
Q 037699          163 NSLTLNVSPDWIPPFQLKELNLESCNLVGNR  193 (203)
Q Consensus       163 n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~  193 (203)
                      |.+++..+..+..+++|+.|++++|++.++.
T Consensus       191 N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  221 (270)
T 2o6q_A          191 NQLKRVPEGAFDSLEKLKMLQLQENPWDCTC  221 (270)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred             CcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence            9888655556778888999999999886554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=1.5e-21  Score=142.39  Aligned_cols=159  Identities=23%  Similarity=0.229  Sum_probs=122.8

Q ss_pred             ccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhh
Q 037699            4 VFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFG   83 (203)
Q Consensus         4 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~   83 (203)
                      .+..+++|+.|++++|.++...+..+..+++|++|++++|.     +....+..+..+++|++|++++|.++...+..+.
T Consensus        56 ~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  130 (270)
T 2o6q_A           56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-----LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD  130 (270)
T ss_dssp             SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-----CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTT
T ss_pred             HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-----CCcCCHhHcccccCCCEEECCCCccCeeCHHHhC
Confidence            56677799999999999986666667889999999999996     6666667788899999999999999877777788


Q ss_pred             ccCCccEEEccCCcCCcchhhhhhh---ccccccCCcccccccc---ccCCCCCEEEccCCccccccchhhhccCCCccE
Q 037699           84 RLCKLRSVFLSHSNMNQEISKILNI---FSTCILDGLEVLEMTE---WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKY  157 (203)
Q Consensus        84 ~l~~L~~L~l~~n~~~~~~~~~~~~---~~~~~~~~l~~l~~~~---~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~  157 (203)
                      .+++|++|++++|.+....+..+..   +....+.+.....++.   ..+++|+.|++++|.+. ..+...+..+++|+.
T Consensus       131 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~  209 (270)
T 2o6q_A          131 SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKM  209 (270)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCE
T ss_pred             cCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCE
Confidence            9999999999999888765544332   2222222222222222   16789999999999996 555557888999999


Q ss_pred             EEccCCccccc
Q 037699          158 FDVSQNSLTLN  168 (203)
Q Consensus       158 L~l~~n~~~~~  168 (203)
                      |++++|.+...
T Consensus       210 L~l~~N~~~c~  220 (270)
T 2o6q_A          210 LQLQENPWDCT  220 (270)
T ss_dssp             EECCSSCBCCS
T ss_pred             EEecCCCeeCC
Confidence            99999998753

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.89  E-value=9.6e-22  Score=144.51  Aligned_cols=181  Identities=20%  Similarity=0.175  Sum_probs=137.3

Q ss_pred             cEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCccEE
Q 037699           12 VFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSV   91 (203)
Q Consensus        12 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L   91 (203)
                      +.++.+++.++ .+|..+  .+++++|++++|.     +....+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~-----i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L   85 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNR-----ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQL   85 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSC-----CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCc-----CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEE
Confidence            57888988888 455443  5789999999997     777777789999999999999999997778889999999999


Q ss_pred             EccCCc-CCcchhhhhhhc---cccccCCcccccccc---ccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCc
Q 037699           92 FLSHSN-MNQEISKILNIF---STCILDGLEVLEMTE---WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNS  164 (203)
Q Consensus        92 ~l~~n~-~~~~~~~~~~~~---~~~~~~~l~~l~~~~---~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~  164 (203)
                      ++++|. +....+..+..+   ....+.+.....++.   ..+++|+.|++++|.+. ..+...+..+++|+.|++++|.
T Consensus        86 ~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~  164 (285)
T 1ozn_A           86 DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNR  164 (285)
T ss_dssp             ECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             eCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCc
Confidence            999997 666545444322   111122222112211   25789999999999996 4454468889999999999999


Q ss_pred             cccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhccc
Q 037699          165 LTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQK  202 (203)
Q Consensus       165 ~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~~  202 (203)
                      +++..+..+..+++|++|++++|.+ .+..|.++..++
T Consensus       165 l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~  201 (285)
T 1ozn_A          165 ISSVPERAFRGLHSLDRLLLHQNRV-AHVHPHAFRDLG  201 (285)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCT
T ss_pred             ccccCHHHhcCccccCEEECCCCcc-cccCHhHccCcc
Confidence            9866666788899999999999998 444466666554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=4.2e-21  Score=140.26  Aligned_cols=160  Identities=27%  Similarity=0.295  Sum_probs=105.5

Q ss_pred             cCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccC
Q 037699            7 LSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLC   86 (203)
Q Consensus         7 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~   86 (203)
                      .+++|+.|++++|.+++ + ..+..+++|++|++++|.     +.+..+..+..+++|++|++++|.+++..+..+..++
T Consensus        61 ~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  133 (272)
T 3rfs_A           61 YLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQ-----LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT  133 (272)
T ss_dssp             GCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSC-----CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred             cCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCc-----cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCC
Confidence            34455666666665553 1 245555666666666654     4444444455556666666666665544444455556


Q ss_pred             CccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccc
Q 037699           87 KLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT  166 (203)
Q Consensus        87 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~  166 (203)
                      +|++|++++|.+....+..+.                  .+++|+.|++++|.+. ..+...+..+++|+.|++++|.++
T Consensus       134 ~L~~L~L~~n~l~~~~~~~~~------------------~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          134 NLTYLNLAHNQLQSLPKGVFD------------------KLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             TCCEEECCSSCCCCCCTTTTT------------------TCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCEEECCCCccCccCHHHhc------------------cCccCCEEECCCCCcC-ccCHHHhcCCccCCEEECCCCcCC
Confidence            666666666655543333222                  6788999999999996 444446788999999999999999


Q ss_pred             cccCCCCCCCCCccEEEcCCCCCCCC
Q 037699          167 LNVSPDWIPPFQLKELNLESCNLVGN  192 (203)
Q Consensus       167 ~~~~~~l~~~~~L~~L~l~~n~l~~~  192 (203)
                      +..+..+..+++|++|++++|.+.++
T Consensus       195 ~~~~~~~~~l~~L~~L~l~~N~~~~~  220 (272)
T 3rfs_A          195 SVPDGVFDRLTSLQYIWLHDNPWDCT  220 (272)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             ccCHHHHhCCcCCCEEEccCCCcccc
Confidence            77766788899999999999998543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.88  E-value=6.9e-22  Score=146.68  Aligned_cols=179  Identities=22%  Similarity=0.254  Sum_probs=112.4

Q ss_pred             CCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccc-cccCCCCCCCEEEccccccCccchhhhhccC
Q 037699            8 SDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFS-SSVGNLTSIQTLDLSFNNLEGKIATSFGRLC   86 (203)
Q Consensus         8 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~   86 (203)
                      .++|+.|++++|.+. .++..+..+++|++|++++|.     +....+ ..+..+++|++|++++|.+....+..+..++
T Consensus        77 ~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  150 (306)
T 2z66_A           77 TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN-----LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS  150 (306)
T ss_dssp             CSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSE-----EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCT
T ss_pred             ccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCc-----ccccccchhhhhccCCCEEECCCCcCCccchhhcccCc
Confidence            346666666666665 345556666666666666664     333332 3455666666666666666555555566666


Q ss_pred             CccEEEccCCcCCc-chhhhhhh---ccccccCCccccccc---cccCCCCCEEEccCCccccccchhhhccCCCccEEE
Q 037699           87 KLRSVFLSHSNMNQ-EISKILNI---FSTCILDGLEVLEMT---EWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFD  159 (203)
Q Consensus        87 ~L~~L~l~~n~~~~-~~~~~~~~---~~~~~~~~l~~l~~~---~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~  159 (203)
                      +|++|++++|.+.+ ..+..+..   +....+.+......+   ...+++|+.|++++|.+.+ .+...+..+++|+.|+
T Consensus       151 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~  229 (306)
T 2z66_A          151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLD  229 (306)
T ss_dssp             TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB-CCSGGGTTCTTCCEEE
T ss_pred             CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc-cChhhccCcccCCEeE
Confidence            66666666665543 22222211   111111111111110   1167899999999999964 4433678899999999


Q ss_pred             ccCCccccccCCCCCCCC-CccEEEcCCCCCCCCC
Q 037699          160 VSQNSLTLNVSPDWIPPF-QLKELNLESCNLVGNR  193 (203)
Q Consensus       160 l~~n~~~~~~~~~l~~~~-~L~~L~l~~n~l~~~~  193 (203)
                      +++|.+++..+..+..++ +|++|++++|.++++.
T Consensus       230 L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c  264 (306)
T 2z66_A          230 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC  264 (306)
T ss_dssp             CTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred             CCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence            999999988888888875 8999999999997654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.88  E-value=4.1e-21  Score=149.76  Aligned_cols=175  Identities=26%  Similarity=0.237  Sum_probs=103.3

Q ss_pred             CcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCc
Q 037699            9 DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL   88 (203)
Q Consensus         9 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L   88 (203)
                      ++++.|++++|.+++..+..+..+++|++|++++|.     +....+..+..+++|++|++++|.++...+..+..+++|
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-----i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  149 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-----IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKL  149 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-----CCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-----cCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCC
Confidence            356666666666665556666666666666666665     555555566666666666666666664444445666666


Q ss_pred             cEEEccCCcCCcchhhhhhhccc--------------------cccCCccccccccc---------cCCCCCEEEccCCc
Q 037699           89 RSVFLSHSNMNQEISKILNIFST--------------------CILDGLEVLEMTEW---------QLSSLDSVNLSNNT  139 (203)
Q Consensus        89 ~~L~l~~n~~~~~~~~~~~~~~~--------------------~~~~~l~~l~~~~~---------~~~~L~~L~l~~n~  139 (203)
                      ++|++++|.+....+..+..+..                    ..+.+++.+.+...         .+++|+.|++++|.
T Consensus       150 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~  229 (452)
T 3zyi_A          150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNH  229 (452)
T ss_dssp             CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSC
T ss_pred             CEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCc
Confidence            66666666655433322211100                    00222332222211         45567777777777


Q ss_pred             cccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCC
Q 037699          140 LFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNL  189 (203)
Q Consensus       140 l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l  189 (203)
                      +.+..+. .+..+++|+.|++++|.+++..+..+..+++|++|+|++|.+
T Consensus       230 l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  278 (452)
T 3zyi_A          230 FPEIRPG-SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL  278 (452)
T ss_dssp             CSEECGG-GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CcccCcc-cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC
Confidence            7533333 667777777777777777766666677777777777777777

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=2.7e-21  Score=142.51  Aligned_cols=171  Identities=23%  Similarity=0.177  Sum_probs=86.0

Q ss_pred             CcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCc
Q 037699            9 DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL   88 (203)
Q Consensus         9 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L   88 (203)
                      ++++.|++++|.+++..+..+..+++|++|++++|.     +....+ . ..+++|++|++++|.++ .+|..+..+++|
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-----l~~~~~-~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L  102 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-----LTKLQV-D-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL  102 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-----CCEEEC-C-SCCTTCCEEECCSSCCS-SCCCCTTTCTTC
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-----cCcccC-C-CCCCcCCEEECCCCcCC-cCchhhccCCCC
Confidence            456666666666665555566666667777776664     333222 1 45666666666666666 555566666667


Q ss_pred             cEEEccCCcCCcchhhhhhhc---cccccCCcccccccc---ccCCCCCEEEccCCccccccchhhhccCCCccEEEccC
Q 037699           89 RSVFLSHSNMNQEISKILNIF---STCILDGLEVLEMTE---WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQ  162 (203)
Q Consensus        89 ~~L~l~~n~~~~~~~~~~~~~---~~~~~~~l~~l~~~~---~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~  162 (203)
                      ++|++++|.+....+..+..+   ..+.+.+...-.++.   ..+++|+.|++++|.+. .++...+..+++|+.|++++
T Consensus       103 ~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~  181 (290)
T 1p9a_G          103 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQE  181 (290)
T ss_dssp             CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-CCCTTTTTTCTTCCEEECCS
T ss_pred             CEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC-ccCHHHhcCcCCCCEEECCC
Confidence            777777666665444333311   111111111111111   03344555555555543 33333344445555555555


Q ss_pred             CccccccCCCCCCCCCccEEEcCCCCC
Q 037699          163 NSLTLNVSPDWIPPFQLKELNLESCNL  189 (203)
Q Consensus       163 n~~~~~~~~~l~~~~~L~~L~l~~n~l  189 (203)
                      |.++ .+|..+...++|+.+++++|++
T Consensus       182 N~l~-~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          182 NSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             SCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             CcCC-ccChhhcccccCCeEEeCCCCc
Confidence            5554 3344444444455555555554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.87  E-value=1.2e-20  Score=141.48  Aligned_cols=181  Identities=20%  Similarity=0.207  Sum_probs=86.0

Q ss_pred             cccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhc
Q 037699            5 FGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGR   84 (203)
Q Consensus         5 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~   84 (203)
                      +..+++|++|++++|.+++..|..+..+++|++|++++|.     +. .+|..+.  ++|++|++++|.++...+..+..
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-----l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~  143 (330)
T 1xku_A           72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-----LK-ELPEKMP--KTLQELRVHENEITKVRKSVFNG  143 (330)
T ss_dssp             TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-----CS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTT
T ss_pred             hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-----CC-ccChhhc--ccccEEECCCCcccccCHhHhcC
Confidence            3344455555555555554444555555555555555553     22 1222221  34445555555554444445666


Q ss_pred             cCCccEEEccCCcCCc--chhhhhhhccccccCCccccc--------cccccCCCCCEEEccCCccccccchhhhccCCC
Q 037699           85 LCKLRSVFLSHSNMNQ--EISKILNIFSTCILDGLEVLE--------MTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSK  154 (203)
Q Consensus        85 l~~L~~L~l~~n~~~~--~~~~~~~~~~~~~~~~l~~l~--------~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~  154 (203)
                      +++|+++++++|.+..  ..+..+..     +..++.+.        ++....++|+.|++++|.+.+..+. .+..+++
T Consensus       144 l~~L~~L~l~~n~l~~~~~~~~~~~~-----l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~  217 (330)
T 1xku_A          144 LNQMIVVELGTNPLKSSGIENGAFQG-----MKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAA-SLKGLNN  217 (330)
T ss_dssp             CTTCCEEECCSSCCCGGGBCTTGGGG-----CTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTG-GGTTCTT
T ss_pred             CccccEEECCCCcCCccCcChhhccC-----CCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHH-HhcCCCC
Confidence            6667777776666643  12222211     12222222        1111224555566655555432222 4555555


Q ss_pred             ccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhcc
Q 037699          155 LKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQ  201 (203)
Q Consensus       155 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~  201 (203)
                      |+.|++++|.+++..+..+..+++|++|++++|.+  ..+|.++..+
T Consensus       218 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~lp~~l~~l  262 (330)
T 1xku_A          218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL--VKVPGGLADH  262 (330)
T ss_dssp             CCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC--SSCCTTTTTC
T ss_pred             CCEEECCCCcCceeChhhccCCCCCCEEECCCCcC--ccCChhhccC
Confidence            66666666655544444455555555555555555  3455555443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.87  E-value=7.9e-21  Score=145.47  Aligned_cols=190  Identities=23%  Similarity=0.219  Sum_probs=115.0

Q ss_pred             ccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhh
Q 037699            4 VFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFG   83 (203)
Q Consensus         4 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~   83 (203)
                      .+..+++|+.|++++|.+++..+..+..+++|++|++++|.     +....+..+..+++|++|++++|.++...+..+.
T Consensus        88 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-----l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  162 (390)
T 3o6n_A           88 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-----LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ  162 (390)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-----CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTS
T ss_pred             hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCc-----cCcCCHHHhcCCCCCcEEECCCCccCccChhhcc
Confidence            44555567777777776665556666677777777777764     4444344456677777777777777655556667


Q ss_pred             ccCCccEEEccCCcCCcchhhhhhhccccc-----------c---------------------CCcccccccc-------
Q 037699           84 RLCKLRSVFLSHSNMNQEISKILNIFSTCI-----------L---------------------DGLEVLEMTE-------  124 (203)
Q Consensus        84 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~-----------~---------------------~~l~~l~~~~-------  124 (203)
                      .+++|++|++++|.+.......+..+....           .                     .+++.+.+..       
T Consensus       163 ~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~  242 (390)
T 3o6n_A          163 ATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA  242 (390)
T ss_dssp             SCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCG
T ss_pred             CCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccH
Confidence            777777777777766554322222111100           0                     0111111110       


Q ss_pred             --ccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhccc
Q 037699          125 --WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQK  202 (203)
Q Consensus       125 --~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~~  202 (203)
                        ..+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+++ ++..+..+++|++|++++|.+  ..+|..+..++
T Consensus       243 ~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~l~  318 (390)
T 3o6n_A          243 WLLNYPGLVEVDLSYNELEKIMYH-PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL--LHVERNQPQFD  318 (390)
T ss_dssp             GGGGCTTCSEEECCSSCCCEEESG-GGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCC--CCCGGGHHHHT
T ss_pred             HHcCCCCccEEECCCCcCCCcChh-HccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcc--eecCccccccC
Confidence              1456777777777777543333 66777788888888887774 344556677888888888887  45776665543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.87  E-value=5.2e-21  Score=148.68  Aligned_cols=174  Identities=25%  Similarity=0.226  Sum_probs=87.9

Q ss_pred             cccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCcc
Q 037699           10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLR   89 (203)
Q Consensus        10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~   89 (203)
                      +++.|++++|.+....+..+..+++|++|++++|.     +....+..+..+++|++|++++|.++...+..+..+++|+
T Consensus        65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-----i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  139 (440)
T 3zyj_A           65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-----IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLK  139 (440)
T ss_dssp             TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-----CCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCC
T ss_pred             CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-----CCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCc
Confidence            45555555555554444555555555555555554     4444444455555555555555555533333445555555


Q ss_pred             EEEccCCcCCcchhhhhhhccc--------------------cccCCcccccccc---------ccCCCCCEEEccCCcc
Q 037699           90 SVFLSHSNMNQEISKILNIFST--------------------CILDGLEVLEMTE---------WQLSSLDSVNLSNNTL  140 (203)
Q Consensus        90 ~L~l~~n~~~~~~~~~~~~~~~--------------------~~~~~l~~l~~~~---------~~~~~L~~L~l~~n~l  140 (203)
                      +|++++|.+....+..+..+..                    ..+.+++.+.+..         ..+++|+.|++++|.+
T Consensus       140 ~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l  219 (440)
T 3zyj_A          140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHL  219 (440)
T ss_dssp             EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCC
T ss_pred             eeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCcc
Confidence            5555555544332222111000                    0022222222211         1345666666666666


Q ss_pred             ccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCC
Q 037699          141 FGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNL  189 (203)
Q Consensus       141 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l  189 (203)
                      .+..+ ..+..+++|+.|++++|.+++..+..+..+++|++|+|++|.+
T Consensus       220 ~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  267 (440)
T 3zyj_A          220 SAIRP-GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL  267 (440)
T ss_dssp             CEECT-TTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred             CccCh-hhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence            43222 2556666666666666666655555566666666666666666

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.87  E-value=3.8e-21  Score=149.86  Aligned_cols=94  Identities=24%  Similarity=0.288  Sum_probs=53.9

Q ss_pred             ccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccc--cCCCCCCCEEEccccccCccchhh
Q 037699            4 VFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSS--VGNLTSIQTLDLSFNNLEGKIATS   81 (203)
Q Consensus         4 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~--l~~~~~L~~L~l~~~~~~~~~~~~   81 (203)
                      .+..+++|++|++++|.+++..|..+.++++|++|++++|.     +.+..+..  +..+++|++|++++|.+++..|..
T Consensus        74 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  148 (455)
T 3v47_A           74 TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCN-----LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS  148 (455)
T ss_dssp             TTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSC-----CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG
T ss_pred             cccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCC-----CCccccCcccccCcccCCEEECCCCccCccCccc
Confidence            34445566666666666655555566666666666666664     43322322  555666666666666666444443


Q ss_pred             -hhccCCccEEEccCCcCCcch
Q 037699           82 -FGRLCKLRSVFLSHSNMNQEI  102 (203)
Q Consensus        82 -~~~l~~L~~L~l~~n~~~~~~  102 (203)
                       +..+++|++|++++|.+....
T Consensus       149 ~~~~l~~L~~L~L~~n~l~~~~  170 (455)
T 3v47_A          149 FFLNMRRFHVLDLTFNKVKSIC  170 (455)
T ss_dssp             GGGGCTTCCEEECTTCCBSCCC
T ss_pred             ccCCCCcccEEeCCCCcccccC
Confidence             566666666666666655443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.87  E-value=1.3e-20  Score=151.59  Aligned_cols=190  Identities=23%  Similarity=0.221  Sum_probs=122.0

Q ss_pred             ccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhh
Q 037699            4 VFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFG   83 (203)
Q Consensus         4 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~   83 (203)
                      .+..+++|+.|++++|.+++..+..++.+++|++|++++|.     +....+..+..+++|++|++++|.+++..|..+.
T Consensus        94 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-----l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  168 (597)
T 3oja_B           94 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-----LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ  168 (597)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-----CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT
T ss_pred             HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCC-----CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhh
Confidence            45556677777777777776666666777777777777775     5554444556777777777777777766666677


Q ss_pred             ccCCccEEEccCCcCCcchhhhhhhcccccc--------------------------------CCccccccc--------
Q 037699           84 RLCKLRSVFLSHSNMNQEISKILNIFSTCIL--------------------------------DGLEVLEMT--------  123 (203)
Q Consensus        84 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~--------------------------------~~l~~l~~~--------  123 (203)
                      .+++|++|++++|.+.......+..+....+                                .+++.+.+.        
T Consensus       169 ~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~  248 (597)
T 3oja_B          169 ATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA  248 (597)
T ss_dssp             TCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCG
T ss_pred             cCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCCh
Confidence            7777777777777766543322221111000                                011111111        


Q ss_pred             -cccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhccc
Q 037699          124 -EWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQK  202 (203)
Q Consensus       124 -~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~~  202 (203)
                       ...+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+++ ++..+..+++|+.|+|++|.+  ..+|.++..++
T Consensus       249 ~l~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l--~~i~~~~~~l~  324 (597)
T 3oja_B          249 WLLNYPGLVEVDLSYNELEKIMYH-PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL--LHVERNQPQFD  324 (597)
T ss_dssp             GGGGCTTCSEEECCSSCCCEEESG-GGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCC--CCCGGGHHHHT
T ss_pred             hhccCCCCCEEECCCCccCCCCHH-HhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCC--CccCcccccCC
Confidence             11456788888888877644444 67778888888888888875 455566678888888888888  46777776554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.87  E-value=5.2e-22  Score=160.71  Aligned_cols=189  Identities=12%  Similarity=0.152  Sum_probs=144.6

Q ss_pred             CCcccccCCcccEEecCCCccCCC-----------------CCcccc--CCCCccEEeCCCCcccccccccccccccCCC
Q 037699            1 MPWVFGLSDHLVFLDLSLNNFQGP-----------------IPRGLG--NLTSLRYLDLSANISILQYLSGTFSSSVGNL   61 (203)
Q Consensus         1 ~p~~~~~~~~L~~L~l~~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~   61 (203)
                      ||..++.+++|+.|++++|.+++.                 +|..++  .+++|++|++++|.     +.+.+|..+..+
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~-----l~~~~p~~l~~l  272 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP-----NLTKLPTFLKAL  272 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT-----TCSSCCTTTTTC
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc-----CCccChHHHhcC
Confidence            467788888999999999999975                 899988  99999999999997     888899999999


Q ss_pred             CCCCEEEccccc-cCc-cchhhhhcc------CCccEEEccCCcCCcchhh--hhhhcc---ccccCCcccc-cccc-cc
Q 037699           62 TSIQTLDLSFNN-LEG-KIATSFGRL------CKLRSVFLSHSNMNQEISK--ILNIFS---TCILDGLEVL-EMTE-WQ  126 (203)
Q Consensus        62 ~~L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~n~~~~~~~~--~~~~~~---~~~~~~l~~l-~~~~-~~  126 (203)
                      ++|++|++++|. +++ .+|..++.+      ++|++|++++|.+. ..|.  .+..+.   ...+.+.... .++. ..
T Consensus       273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~  351 (636)
T 4eco_A          273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGS  351 (636)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEE
T ss_pred             CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCC
Confidence            999999999998 887 789988887      99999999999998 4444  443221   1112222211 2221 15


Q ss_pred             CCCCCEEEccCCccccccchhhhccCCC-ccEEEccCCccccccCCCCCCCC--CccEEEcCCCCCCCCCCchhhh
Q 037699          127 LSSLDSVNLSNNTLFGSLFEIHFAKLSK-LKYFDVSQNSLTLNVSPDWIPPF--QLKELNLESCNLVGNRFPSWLL  199 (203)
Q Consensus       127 ~~~L~~L~l~~n~l~~~~~~~~l~~~~~-L~~L~l~~n~~~~~~~~~l~~~~--~L~~L~l~~n~l~~~~~p~~~~  199 (203)
                      +++|+.|++++|.+. .++. .+..+++ |+.|++++|.++ .+|..+....  +|++|++++|.+ ....|.++.
T Consensus       352 l~~L~~L~L~~N~l~-~lp~-~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l-~~~~p~~l~  423 (636)
T 4eco_A          352 EIKLASLNLAYNQIT-EIPA-NFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEI-GSVDGKNFD  423 (636)
T ss_dssp             EEEESEEECCSSEEE-ECCT-TSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCT-TTTTTCSSC
T ss_pred             CCCCCEEECCCCccc-cccH-hhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcC-CCcchhhhc
Confidence            567888888888885 5665 5777887 888888888888 6666665544  788888888888 444555554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.86  E-value=2.7e-21  Score=143.92  Aligned_cols=170  Identities=19%  Similarity=0.151  Sum_probs=106.4

Q ss_pred             CCcccEEecCCCccCCCCCccc--cCCCCccEEeCCCCcccccccccccccccCCC-----CCCCEEEccccccCccchh
Q 037699            8 SDHLVFLDLSLNNFQGPIPRGL--GNLTSLRYLDLSANISILQYLSGTFSSSVGNL-----TSIQTLDLSFNNLEGKIAT   80 (203)
Q Consensus         8 ~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~-----~~L~~L~l~~~~~~~~~~~   80 (203)
                      .++|++|++++|.+++..|..+  ..+++|++|++++|.     +.+. |..+..+     ++|++|++++|.+++..+.
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-----l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~  167 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-----WATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCE  167 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-----CSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTT
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-----Ccch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHH
Confidence            4578888888888777677665  777888888888875     5544 5555544     6777777777777766666


Q ss_pred             hhhccCCccEEEccCCcCCcchh--hhhhhccccccCCccccccccc--------------cCCCCCEEEccCCcccccc
Q 037699           81 SFGRLCKLRSVFLSHSNMNQEIS--KILNIFSTCILDGLEVLEMTEW--------------QLSSLDSVNLSNNTLFGSL  144 (203)
Q Consensus        81 ~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~~~~~~~l~~l~~~~~--------------~~~~L~~L~l~~n~l~~~~  144 (203)
                      .++.+++|++|++++|.+.+..+  ...   ....+..++.+.+...              .+++|+.|++++|.+.+..
T Consensus       168 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  244 (312)
T 1wwl_A          168 QVRVFPALSTLDLSDNPELGERGLISAL---CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA  244 (312)
T ss_dssp             TCCCCSSCCEEECCSCTTCHHHHHHHHS---CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred             HhccCCCCCEEECCCCCcCcchHHHHHH---HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence            77777777777777777654311  111   0001222222221111              3467777777777776544


Q ss_pred             chhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCC
Q 037699          145 FEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNL  189 (203)
Q Consensus       145 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l  189 (203)
                      +...+..+++|+.|++++|.++ .+|..+.  ++|++|++++|++
T Consensus       245 ~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l  286 (312)
T 1wwl_A          245 GAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRL  286 (312)
T ss_dssp             CCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCC
T ss_pred             chhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCC
Confidence            3324455677777777777777 4555444  6777777777777

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.86  E-value=1.1e-20  Score=133.95  Aligned_cols=162  Identities=19%  Similarity=0.252  Sum_probs=136.4

Q ss_pred             ccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCccE
Q 037699           11 LVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRS   90 (203)
Q Consensus        11 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   90 (203)
                      -+.++++++.++ .+|..+.  .+++.|++++|.     +....+..+..+++|++|++++|.++...|..|..+++|++
T Consensus        13 ~~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~-----i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~   84 (220)
T 2v9t_B           13 NNIVDCRGKGLT-EIPTNLP--ETITEIRLEQNT-----IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNS   84 (220)
T ss_dssp             TTEEECTTSCCS-SCCSSCC--TTCCEEECCSSC-----CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCE
T ss_pred             CCEEEcCCCCcC-cCCCccC--cCCCEEECCCCc-----CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCE
Confidence            367899999888 5666554  689999999997     77777778999999999999999999777889999999999


Q ss_pred             EEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccC
Q 037699           91 VFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVS  170 (203)
Q Consensus        91 L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~  170 (203)
                      |++++|.+....+..+.                  .+++|+.|++++|.+.+ .+...+..+++|+.|++++|.+++..+
T Consensus        85 L~Ls~N~l~~l~~~~f~------------------~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~  145 (220)
T 2v9t_B           85 LVLYGNKITELPKSLFE------------------GLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAK  145 (220)
T ss_dssp             EECCSSCCCCCCTTTTT------------------TCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             EECCCCcCCccCHhHcc------------------CCCCCCEEECCCCCCCE-eCHHHcCCCCCCCEEECCCCcCCEECH
Confidence            99999999866555444                  67899999999999964 444478899999999999999997777


Q ss_pred             CCCCCCCCccEEEcCCCCCCCCCCchhhh
Q 037699          171 PDWIPPFQLKELNLESCNLVGNRFPSWLL  199 (203)
Q Consensus       171 ~~l~~~~~L~~L~l~~n~l~~~~~p~~~~  199 (203)
                      ..+..+++|++|++++|.+.++.--.|+.
T Consensus       146 ~~~~~l~~L~~L~L~~N~~~c~c~l~~l~  174 (220)
T 2v9t_B          146 GTFSPLRAIQTMHLAQNPFICDCHLKWLA  174 (220)
T ss_dssp             TTTTTCTTCCEEECCSSCEECSGGGHHHH
T ss_pred             HHHhCCCCCCEEEeCCCCcCCCCccHHHH
Confidence            77888999999999999997765555553

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=3.1e-20  Score=134.09  Aligned_cols=166  Identities=22%  Similarity=0.253  Sum_probs=138.6

Q ss_pred             CcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCc
Q 037699            9 DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL   88 (203)
Q Consensus         9 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L   88 (203)
                      ...+.++++++.++ .+|..+.  .+++.|++++|.     +....+..+..+++|++|++++|.+++..+..+..+++|
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L   85 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTG-----LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL   85 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSC-----CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCC-----cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcC
Confidence            35788999999998 5666654  689999999997     788888889999999999999999997777889999999


Q ss_pred             cEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccc
Q 037699           89 RSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLN  168 (203)
Q Consensus        89 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~  168 (203)
                      ++|++++|.+....+..+.                  .+++|+.|++++|.+. ..+...+..+++|+.|++++|.+++.
T Consensus        86 ~~L~L~~n~l~~~~~~~~~------------------~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~  146 (251)
T 3m19_A           86 GTLGLANNQLASLPLGVFD------------------HLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSI  146 (251)
T ss_dssp             CEEECTTSCCCCCCTTTTT------------------TCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CEEECCCCcccccChhHhc------------------ccCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCcc
Confidence            9999999999876655544                  6789999999999996 55554678999999999999999976


Q ss_pred             cCCCCCCCCCccEEEcCCCCCCCCCCchhhhccc
Q 037699          169 VSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQK  202 (203)
Q Consensus       169 ~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~~  202 (203)
                      .+..+..+++|++|++++|.++ ...+..+..++
T Consensus       147 ~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~  179 (251)
T 3m19_A          147 PAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLG  179 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCT
T ss_pred             CHHHcCcCcCCCEEECCCCcCC-ccCHHHHhCCC
Confidence            6667889999999999999993 33333455443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.86  E-value=9e-21  Score=142.23  Aligned_cols=175  Identities=18%  Similarity=0.182  Sum_probs=83.6

Q ss_pred             cccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhc
Q 037699            5 FGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGR   84 (203)
Q Consensus         5 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~   84 (203)
                      +..+++|++|++++|.+++..|..+..+++|++|++++|.     +. .+|..+.  ++|++|++++|.++...+..+..
T Consensus        74 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-----l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~  145 (332)
T 2ft3_A           74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-----LV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSG  145 (332)
T ss_dssp             TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-----CC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSS
T ss_pred             hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-----CC-ccCcccc--ccCCEEECCCCccCccCHhHhCC
Confidence            3344455555555555544444445555555555555553     22 2222222  44555555555555333445666


Q ss_pred             cCCccEEEccCCcCCc--chhhhhhhc--ccccc-------------CCccccccc-----------cccCCCCCEEEcc
Q 037699           85 LCKLRSVFLSHSNMNQ--EISKILNIF--STCIL-------------DGLEVLEMT-----------EWQLSSLDSVNLS  136 (203)
Q Consensus        85 l~~L~~L~l~~n~~~~--~~~~~~~~~--~~~~~-------------~~l~~l~~~-----------~~~~~~L~~L~l~  136 (203)
                      +++|++|++++|.+..  ..+..+..+  ....+             .+++.+.+.           ...+++|+.|+++
T Consensus       146 l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~  225 (332)
T 2ft3_A          146 LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLG  225 (332)
T ss_dssp             CSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCC
T ss_pred             CccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence            7777777777776643  222222111  00000             112222111           0134455566666


Q ss_pred             CCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCC
Q 037699          137 NNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNL  189 (203)
Q Consensus       137 ~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l  189 (203)
                      +|.+.+ .+...+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+
T Consensus       226 ~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l  276 (332)
T 2ft3_A          226 HNQIRM-IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI  276 (332)
T ss_dssp             SSCCCC-CCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCC
T ss_pred             CCcCCc-CChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCC
Confidence            665543 22224555666666666666665 4455555566666666666665

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.86  E-value=2.3e-20  Score=146.42  Aligned_cols=62  Identities=21%  Similarity=0.188  Sum_probs=35.8

Q ss_pred             CCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCC
Q 037699          127 LSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNL  189 (203)
Q Consensus       127 ~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l  189 (203)
                      +++|+.|++++|.+. ..+...+..+++|+.|++++|.+++..+..+..+++|++|++++|.+
T Consensus       247 l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  308 (477)
T 2id5_A          247 LVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL  308 (477)
T ss_dssp             CTTCCEEECCSSCCC-EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCC
T ss_pred             ccccCeeECCCCcCC-ccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcC
Confidence            345555555555553 22222455555666666666666655555666666777777777776

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.86  E-value=1.9e-21  Score=144.31  Aligned_cols=190  Identities=25%  Similarity=0.210  Sum_probs=141.9

Q ss_pred             ccccCCcccEEecCCCccCCC--CCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccch-h
Q 037699            4 VFGLSDHLVFLDLSLNNFQGP--IPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIA-T   80 (203)
Q Consensus         4 ~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~   80 (203)
                      .+..+++|+.|++++|.++..  .+..+..+++|++|++++|.     +. .++..+..+++|++|++++|.++...+ .
T Consensus        47 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-----i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~  120 (306)
T 2z66_A           47 VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-----VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFS  120 (306)
T ss_dssp             TTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-----EE-EEEEEEETCTTCCEEECTTSEEESSTTTT
T ss_pred             HhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-----cc-cChhhcCCCCCCCEEECCCCcccccccch
Confidence            467778999999999998732  35667789999999999995     44 456678899999999999999985443 5


Q ss_pred             hhhccCCccEEEccCCcCCcchhhhhhhc---cccccCCccccc--ccc--ccCCCCCEEEccCCccccccchhhhccCC
Q 037699           81 SFGRLCKLRSVFLSHSNMNQEISKILNIF---STCILDGLEVLE--MTE--WQLSSLDSVNLSNNTLFGSLFEIHFAKLS  153 (203)
Q Consensus        81 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~---~~~~~~~l~~l~--~~~--~~~~~L~~L~l~~n~l~~~~~~~~l~~~~  153 (203)
                      .+..+++|++|++++|.+....+..+..+   ....+.+.....  .+.  ..+++|+.|++++|.+.+..+. .+..++
T Consensus       121 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~  199 (306)
T 2z66_A          121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT-AFNSLS  199 (306)
T ss_dssp             TTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT-TTTTCT
T ss_pred             hhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHH-HhcCCC
Confidence            78899999999999999876655544322   111122222111  121  2678999999999999644344 788899


Q ss_pred             CccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhcc
Q 037699          154 KLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQ  201 (203)
Q Consensus       154 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~  201 (203)
                      +|+.|++++|.+++..+..+..+++|++|++++|.+ .+..|..+..+
T Consensus       200 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~~  246 (306)
T 2z66_A          200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI-MTSKKQELQHF  246 (306)
T ss_dssp             TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC-CBCSSSSCCCC
T ss_pred             CCCEEECCCCccCccChhhccCcccCCEeECCCCCC-cccCHHHHHhh
Confidence            999999999999876555678889999999999998 44455555544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.85  E-value=2.2e-20  Score=145.61  Aligned_cols=90  Identities=18%  Similarity=0.263  Sum_probs=75.8

Q ss_pred             cccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCcc
Q 037699           10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLR   89 (203)
Q Consensus        10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~   89 (203)
                      ..+.++.++..++ .+|..+.  +++++|++++|.     +....+..+..+++|++|++++|.+++..+..|..+++|+
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~-----i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~  126 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENN-----IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLN  126 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSC-----CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCc-----CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCC
Confidence            3567888888887 5665553  689999999997     8888888999999999999999999977778899999999


Q ss_pred             EEEccCCcCCcchhhhhh
Q 037699           90 SVFLSHSNMNQEISKILN  107 (203)
Q Consensus        90 ~L~l~~n~~~~~~~~~~~  107 (203)
                      +|++++|.+....+..+.
T Consensus       127 ~L~L~~n~l~~~~~~~~~  144 (452)
T 3zyi_A          127 TLELFDNWLTVIPSGAFE  144 (452)
T ss_dssp             EEECCSSCCSBCCTTTSS
T ss_pred             EEECCCCcCCccChhhhc
Confidence            999999999876665443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.85  E-value=2.7e-20  Score=137.12  Aligned_cols=155  Identities=22%  Similarity=0.252  Sum_probs=106.6

Q ss_pred             cccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhh
Q 037699            3 WVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSF   82 (203)
Q Consensus         3 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~   82 (203)
                      ..+..+++|+.|++++|.++...+ . ..+++|++|++++|.     +. .+|..+..+++|++|++++|.++...+..|
T Consensus        49 ~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L~Ls~N~-----l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~  120 (290)
T 1p9a_G           49 ATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVLGTLDLSHNQ-----LQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGAL  120 (290)
T ss_dssp             GGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTCCEEECCSSC-----CS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTT
T ss_pred             HHhhcCCCCCEEECCCCccCcccC-C-CCCCcCCEEECCCCc-----CC-cCchhhccCCCCCEEECCCCcCcccCHHHH
Confidence            345666788888888888774322 2 667888888888884     33 456667777888888888888875555667


Q ss_pred             hccCCccEEEccCCcCCcchhhhhhh---ccccccCCcccccccc---ccCCCCCEEEccCCccccccchhhhccCCCcc
Q 037699           83 GRLCKLRSVFLSHSNMNQEISKILNI---FSTCILDGLEVLEMTE---WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLK  156 (203)
Q Consensus        83 ~~l~~L~~L~l~~n~~~~~~~~~~~~---~~~~~~~~l~~l~~~~---~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~  156 (203)
                      ..+++|++|++++|.+....+..+..   +....+.+...-.++.   ..+++|+.|++++|.+. .++. .+.....|+
T Consensus       121 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~-~~~~~~~L~  198 (290)
T 1p9a_G          121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK-GFFGSHLLP  198 (290)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCT-TTTTTCCCS
T ss_pred             cCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccCh-hhcccccCC
Confidence            78888888888888777655544332   1111222222222222   15789999999999996 6666 456778999


Q ss_pred             EEEccCCcccc
Q 037699          157 YFDVSQNSLTL  167 (203)
Q Consensus       157 ~L~l~~n~~~~  167 (203)
                      .+++++|.+..
T Consensus       199 ~l~L~~Np~~C  209 (290)
T 1p9a_G          199 FAFLHGNPWLC  209 (290)
T ss_dssp             EEECCSCCBCC
T ss_pred             eEEeCCCCccC
Confidence            99999999864

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.85  E-value=3.3e-21  Score=155.16  Aligned_cols=69  Identities=22%  Similarity=0.130  Sum_probs=38.3

Q ss_pred             cCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCC-CccEEEcCCCCCCCCCCch
Q 037699          126 QLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPF-QLKELNLESCNLVGNRFPS  196 (203)
Q Consensus       126 ~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~-~L~~L~l~~n~l~~~~~p~  196 (203)
                      .+++|+.|++++|.+.+..+. .+..+++|+.|++++|+++ .+|..+..++ +|++|++++|++.++.-..
T Consensus       495 ~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~  564 (606)
T 3vq2_A          495 TLHRLQLLNMSHNNLLFLDSS-HYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ  564 (606)
T ss_dssp             TCTTCCEEECCSSCCSCEEGG-GTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred             ccccCCEEECCCCcCCCcCHH-HccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence            455666666666666433333 4556666666666666665 3444455554 4666666666665444333

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.85  E-value=8e-21  Score=133.44  Aligned_cols=163  Identities=23%  Similarity=0.244  Sum_probs=109.9

Q ss_pred             CCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCC
Q 037699            8 SDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCK   87 (203)
Q Consensus         8 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~   87 (203)
                      .++++.|++++|.++...+..+..+++|++|++++|.     +....+..+..+++|++|++++|.++...+..+..+++
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  101 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-----LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQ  101 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-----CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-----cCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccC
Confidence            3467777777777775555566777777777777775     55555555677777777777777777444455677777


Q ss_pred             ccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCcccc
Q 037699           88 LRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTL  167 (203)
Q Consensus        88 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~  167 (203)
                      |++|++++|.+....+..+.                  .+++|+.|++++|.+. ..+...+..+++|+.|++++|.+.+
T Consensus       102 L~~L~L~~N~l~~~~~~~~~------------------~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~  162 (208)
T 2o6s_A          102 LKELALNTNQLQSLPDGVFD------------------KLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDC  162 (208)
T ss_dssp             CCEEECCSSCCCCCCTTTTT------------------TCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred             CCEEEcCCCcCcccCHhHhc------------------cCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCCeec
Confidence            77777777777654443333                  5667777777777775 3444356677777777777776653


Q ss_pred             ccCCCCCCCCCccEEEcCCCCCCCCCCchhhhccc
Q 037699          168 NVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQK  202 (203)
Q Consensus       168 ~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~~  202 (203)
                             .+++|++|+++.|.+ ...+|.++..++
T Consensus       163 -------~~~~l~~L~~~~n~~-~g~ip~~~~~l~  189 (208)
T 2o6s_A          163 -------TCPGIRYLSEWINKH-SGVVRNSAGSVA  189 (208)
T ss_dssp             -------CTTTTHHHHHHHHHC-TTTBBCTTSSBC
T ss_pred             -------CCCCHHHHHHHHHhC-CceeeccCcccc
Confidence                   344677777777777 456777766654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.85  E-value=3e-20  Score=135.95  Aligned_cols=179  Identities=18%  Similarity=0.147  Sum_probs=97.5

Q ss_pred             CcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCc
Q 037699            9 DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL   88 (203)
Q Consensus         9 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L   88 (203)
                      ++++.|++++|.+++..+..+..+++|++|++++|.     +....+..+..+++|++|++++|.+++..+..+..+++|
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  102 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-----IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL  102 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-----CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCc-----CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccc
Confidence            356667777666665555566666666666666665     555555556666666666666666664445556666666


Q ss_pred             cEEEccCCcCCcchhhhhhh---ccccccCCcccc--cccc--ccCCCCCEEEccCCccccccchhhhc-----------
Q 037699           89 RSVFLSHSNMNQEISKILNI---FSTCILDGLEVL--EMTE--WQLSSLDSVNLSNNTLFGSLFEIHFA-----------  150 (203)
Q Consensus        89 ~~L~l~~n~~~~~~~~~~~~---~~~~~~~~l~~l--~~~~--~~~~~L~~L~l~~n~l~~~~~~~~l~-----------  150 (203)
                      ++|++++|.+....+..+..   +....+.+....  .++.  ..+++|+.|++++|.+.+. +...+.           
T Consensus       103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~l~l~  181 (276)
T 2z62_A          103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-YCTDLRVLHQMPLLNLS  181 (276)
T ss_dssp             CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE-CGGGGHHHHTCTTCCEE
T ss_pred             cEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC-CHHHhhhhhhcccccee
Confidence            66666666655433322211   111111111111  1111  1445566666666655321 111121           


Q ss_pred             ----------------cCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCC
Q 037699          151 ----------------KLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNR  193 (203)
Q Consensus       151 ----------------~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~  193 (203)
                                      ...+|+.|++++|.+++..+..+..+++|++|++++|++.++.
T Consensus       182 L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          182 LDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             EECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred             eecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence                            2235677777777777544445566777777788777775543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.85  E-value=1.4e-20  Score=151.53  Aligned_cols=174  Identities=20%  Similarity=0.247  Sum_probs=149.0

Q ss_pred             CcccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccc-cccCCCCCCCEEEccccccCccchh
Q 037699            2 PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFS-SSVGNLTSIQTLDLSFNNLEGKIAT   80 (203)
Q Consensus         2 p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~   80 (203)
                      |..+..+++|+.|++++|.++ ..|..+..+++|++|++++|.     +.+..+ ..+..+++|++|++++|.+++..|.
T Consensus       369 ~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  442 (606)
T 3vq2_A          369 SYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHST-----LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG  442 (606)
T ss_dssp             CHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSE-----EESTTTTTTTTTCTTCCEEECTTSCCEECCTT
T ss_pred             hhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCc-----cCCccChhhhhccccCCEEECcCCCCCccchh
Confidence            445566779999999999988 466889999999999999997     666666 6788999999999999999988888


Q ss_pred             hhhccCCccEEEccCCcCCcc-hhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEE
Q 037699           81 SFGRLCKLRSVFLSHSNMNQE-ISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFD  159 (203)
Q Consensus        81 ~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~  159 (203)
                      .+..+++|++|++++|.+.+. .+..+.                  .+++|+.|++++|.+.+..+. .+..+++|+.|+
T Consensus       443 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~  503 (606)
T 3vq2_A          443 IFLGLTSLNTLKMAGNSFKDNTLSNVFA------------------NTTNLTFLDLSKCQLEQISWG-VFDTLHRLQLLN  503 (606)
T ss_dssp             TTTTCTTCCEEECTTCEEGGGEECSCCT------------------TCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEE
T ss_pred             hhcCCCCCCEEECCCCcCCCcchHHhhc------------------cCCCCCEEECCCCcCCccChh-hhcccccCCEEE
Confidence            999999999999999988762 343333                  678999999999999754444 788999999999


Q ss_pred             ccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhccc
Q 037699          160 VSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQK  202 (203)
Q Consensus       160 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~~  202 (203)
                      +++|.+++..+..+..+++|++|++++|++  ..+|..+..++
T Consensus       504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l--~~~p~~~~~l~  544 (606)
T 3vq2_A          504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRI--ETSKGILQHFP  544 (606)
T ss_dssp             CCSSCCSCEEGGGTTTCTTCCEEECTTSCC--CCEESCGGGSC
T ss_pred             CCCCcCCCcCHHHccCCCcCCEEECCCCcC--cccCHhHhhhc
Confidence            999999988888899999999999999999  47888776653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.85  E-value=8.9e-20  Score=133.19  Aligned_cols=167  Identities=25%  Similarity=0.283  Sum_probs=136.6

Q ss_pred             cCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccC
Q 037699            7 LSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLC   86 (203)
Q Consensus         7 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~   86 (203)
                      ..++|+.+++++|.+.. . ..+..+++|++|++++|.     +.+.  ..+..+++|++|++++|.+++..+..+..++
T Consensus        39 ~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~-----l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~  109 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNK-----LHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLT  109 (272)
T ss_dssp             HHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSC-----CCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred             cccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCC-----CCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCc
Confidence            34589999999999873 3 358889999999999996     5442  4688999999999999999976677789999


Q ss_pred             CccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccc
Q 037699           87 KLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT  166 (203)
Q Consensus        87 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~  166 (203)
                      +|++|++++|.+....+..+.                  .+++|+.|++++|.+. ..+...+..+++|+.|++++|.++
T Consensus       110 ~L~~L~L~~n~l~~~~~~~~~------------------~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~  170 (272)
T 3rfs_A          110 NLKELVLVENQLQSLPDGVFD------------------KLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ  170 (272)
T ss_dssp             TCCEEECTTSCCCCCCTTTTT------------------TCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCEEECCCCcCCccCHHHhc------------------cCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcC
Confidence            999999999998876555444                  6789999999999996 455446789999999999999999


Q ss_pred             cccCCCCCCCCCccEEEcCCCCCCCCCCchhhhccc
Q 037699          167 LNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQK  202 (203)
Q Consensus       167 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~~  202 (203)
                      +..+..+..+++|++|++++|.++ ...|..+..++
T Consensus       171 ~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~  205 (272)
T 3rfs_A          171 SLPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLT  205 (272)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCT
T ss_pred             ccCHHHhcCCccCCEEECCCCcCC-ccCHHHHhCCc
Confidence            766667888999999999999993 33444455543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.85  E-value=1.7e-21  Score=157.67  Aligned_cols=167  Identities=13%  Similarity=0.191  Sum_probs=134.8

Q ss_pred             CCccccCCCCccEEeCCCCcccccccccc-----------------cccccC--CCCCCCEEEccccccCccchhhhhcc
Q 037699           25 IPRGLGNLTSLRYLDLSANISILQYLSGT-----------------FSSSVG--NLTSIQTLDLSFNNLEGKIATSFGRL   85 (203)
Q Consensus        25 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----------------~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~l   85 (203)
                      +|..++++++|++|++++|.     +.+.                 +|..+.  .+++|++|++++|.+.+.+|..++.+
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~-----l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  272 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSP-----FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL  272 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCC-----CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred             CCHHHhcccCCCEEECcCCc-----cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence            67789999999999999997     6664                 899988  99999999999999999999999999


Q ss_pred             CCccEEEccCCc-CCc-chhhhhhhc---------cccccCCcccccccc----ccCCCCCEEEccCCccccccchhhhc
Q 037699           86 CKLRSVFLSHSN-MNQ-EISKILNIF---------STCILDGLEVLEMTE----WQLSSLDSVNLSNNTLFGSLFEIHFA  150 (203)
Q Consensus        86 ~~L~~L~l~~n~-~~~-~~~~~~~~~---------~~~~~~~l~~l~~~~----~~~~~L~~L~l~~n~l~~~~~~~~l~  150 (203)
                      ++|++|++++|. +.+ ..|..+..+         ....+.+...-.++.    ..+++|+.|++++|.+.+.++  .+.
T Consensus       273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~  350 (636)
T 4eco_A          273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--AFG  350 (636)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--CCE
T ss_pred             CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh--hhC
Confidence            999999999998 876 566554332         222222222223443    277889999999999976777  578


Q ss_pred             cCCCccEEEccCCccccccCCCCCCCCC-ccEEEcCCCCCCCCCCchhhhcc
Q 037699          151 KLSKLKYFDVSQNSLTLNVSPDWIPPFQ-LKELNLESCNLVGNRFPSWLLSQ  201 (203)
Q Consensus       151 ~~~~L~~L~l~~n~~~~~~~~~l~~~~~-L~~L~l~~n~l~~~~~p~~~~~~  201 (203)
                      .+++|+.|++++|.++ .+|..+..+++ |++|++++|.+  ..+|.++..+
T Consensus       351 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l--~~lp~~~~~~  399 (636)
T 4eco_A          351 SEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKL--KYIPNIFDAK  399 (636)
T ss_dssp             EEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCC--SSCCSCCCTT
T ss_pred             CCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcC--cccchhhhhc
Confidence            8899999999999998 77788888888 99999999999  3788876543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.85  E-value=2e-20  Score=143.23  Aligned_cols=188  Identities=15%  Similarity=0.108  Sum_probs=136.1

Q ss_pred             ccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhh
Q 037699            4 VFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFG   83 (203)
Q Consensus         4 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~   83 (203)
                      .+..+++|+.|++++|.++...+..+..+++|++|++++|.     +....|..+..+++|++|++++|.++...+..+.
T Consensus        64 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~  138 (390)
T 3o6n_A           64 LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-----IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH  138 (390)
T ss_dssp             HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-----CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             HhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-----CCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhc
Confidence            35666799999999999987777789999999999999997     7777788889999999999999999844344468


Q ss_pred             ccCCccEEEccCCcCCcchhhhhhhccc---cccC-------------Ccccccccc-----------------------
Q 037699           84 RLCKLRSVFLSHSNMNQEISKILNIFST---CILD-------------GLEVLEMTE-----------------------  124 (203)
Q Consensus        84 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~---~~~~-------------~l~~l~~~~-----------------------  124 (203)
                      .+++|++|++++|.+....+..+..+..   ..+.             +++.+.+..                       
T Consensus       139 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~  218 (390)
T 3o6n_A          139 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN  218 (390)
T ss_dssp             TCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCC
T ss_pred             CCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeee
Confidence            8999999999999988766554432211   1111             111111100                       


Q ss_pred             ----ccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhc
Q 037699          125 ----WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLS  200 (203)
Q Consensus       125 ----~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~  200 (203)
                          ...++|+.|++++|.+.+.  . .+..+++|+.|++++|.+++..+..+..+++|++|++++|.+  ..+|..+..
T Consensus       219 ~~~~~~~~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~  293 (390)
T 3o6n_A          219 VVRGPVNVELTILKLQHNNLTDT--A-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL--VALNLYGQP  293 (390)
T ss_dssp             EEECCCCSSCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCC--CEEECSSSC
T ss_pred             eccccccccccEEECCCCCCccc--H-HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcC--cccCcccCC
Confidence                0112455666666666432  2 567888999999999999877778888899999999999998  445555443


Q ss_pred             c
Q 037699          201 Q  201 (203)
Q Consensus       201 ~  201 (203)
                      +
T Consensus       294 l  294 (390)
T 3o6n_A          294 I  294 (390)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.85  E-value=3.8e-20  Score=131.08  Aligned_cols=163  Identities=18%  Similarity=0.238  Sum_probs=135.1

Q ss_pred             cccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccc-cccCCCCCCCEEEccccccCccchhhhhccCCc
Q 037699           10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFS-SSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL   88 (203)
Q Consensus        10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L   88 (203)
                      .-+.++++++.++ .+|..+.  ..+++|++++|.     +....+ ..+..+++|++|++++|.+++..+..|..+++|
T Consensus        12 ~~~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~-----l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L   83 (220)
T 2v70_A           12 EGTTVDCSNQKLN-KIPEHIP--QYTAELRLNNNE-----FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV   83 (220)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCSEEECCSSC-----CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             CCCEeEeCCCCcc-cCccCCC--CCCCEEEcCCCc-----CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC
Confidence            3468999999998 5666553  456899999996     666544 457899999999999999997667789999999


Q ss_pred             cEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccc
Q 037699           89 RSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLN  168 (203)
Q Consensus        89 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~  168 (203)
                      ++|++++|.+....+..+.                  .+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+++.
T Consensus        84 ~~L~Ls~N~l~~~~~~~~~------------------~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~  144 (220)
T 2v70_A           84 NEILLTSNRLENVQHKMFK------------------GLESLKTLMLRSNRITCVGND-SFIGLSSVRLLSLYDNQITTV  144 (220)
T ss_dssp             CEEECCSSCCCCCCGGGGT------------------TCSSCCEEECTTSCCCCBCTT-SSTTCTTCSEEECTTSCCCCB
T ss_pred             CEEECCCCccCccCHhHhc------------------CCcCCCEEECCCCcCCeECHh-HcCCCccCCEEECCCCcCCEE
Confidence            9999999999877666555                  688999999999999744444 788999999999999999987


Q ss_pred             cCCCCCCCCCccEEEcCCCCCCCCCCchhhh
Q 037699          169 VSPDWIPPFQLKELNLESCNLVGNRFPSWLL  199 (203)
Q Consensus       169 ~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~  199 (203)
                      .+..+..+++|++|++++|.+.++.--.|+.
T Consensus       145 ~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~  175 (220)
T 2v70_A          145 APGAFDTLHSLSTLNLLANPFNCNCYLAWLG  175 (220)
T ss_dssp             CTTTTTTCTTCCEEECCSCCEECSGGGHHHH
T ss_pred             CHHHhcCCCCCCEEEecCcCCcCCCchHHHH
Confidence            7888999999999999999997765544443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.85  E-value=5.7e-21  Score=158.34  Aligned_cols=182  Identities=14%  Similarity=0.185  Sum_probs=132.1

Q ss_pred             CCcccccCCcccEEecCCCccCCC-----------------CCcccc--CCCCccEEeCCCCcccccccccccccccCCC
Q 037699            1 MPWVFGLSDHLVFLDLSLNNFQGP-----------------IPRGLG--NLTSLRYLDLSANISILQYLSGTFSSSVGNL   61 (203)
Q Consensus         1 ~p~~~~~~~~L~~L~l~~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~   61 (203)
                      ||..++.+++|+.|++++|.+++.                 +|..++  .+++|++|++++|.     +.+.+|..+..+
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~-----l~~~iP~~l~~L  514 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP-----NMTQLPDFLYDL  514 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT-----TCCSCCGGGGGC
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC-----CCccChHHHhCC
Confidence            467777888999999999999872                 888877  99999999999997     788889999999


Q ss_pred             CCCCEEEccccc-cCc-cchhhhhccC-------CccEEEccCCcCCcchhh--hhhhcc---ccccCCcccccccc-cc
Q 037699           62 TSIQTLDLSFNN-LEG-KIATSFGRLC-------KLRSVFLSHSNMNQEISK--ILNIFS---TCILDGLEVLEMTE-WQ  126 (203)
Q Consensus        62 ~~L~~L~l~~~~-~~~-~~~~~~~~l~-------~L~~L~l~~n~~~~~~~~--~~~~~~---~~~~~~l~~l~~~~-~~  126 (203)
                      ++|++|++++|. +++ .+|..++.++       +|++|++++|.+. ..|.  .+..+.   .+.+.+...-.++. ..
T Consensus       515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~  593 (876)
T 4ecn_A          515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLEAFGT  593 (876)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCT
T ss_pred             CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccchhhcC
Confidence            999999999998 887 7888877776       9999999999988 4444  343221   11122211112222 25


Q ss_pred             CCCCCEEEccCCccccccchhhhccCCC-ccEEEccCCccccccCCCCCCCC--CccEEEcCCCCCCC
Q 037699          127 LSSLDSVNLSNNTLFGSLFEIHFAKLSK-LKYFDVSQNSLTLNVSPDWIPPF--QLKELNLESCNLVG  191 (203)
Q Consensus       127 ~~~L~~L~l~~n~l~~~~~~~~l~~~~~-L~~L~l~~n~~~~~~~~~l~~~~--~L~~L~l~~n~l~~  191 (203)
                      +++|+.|++++|.+. .++. .+..+++ |+.|++++|.++ .+|..+....  +|+.|++++|.+.+
T Consensus       594 L~~L~~L~Ls~N~l~-~lp~-~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g  658 (876)
T 4ecn_A          594 NVKLTDLKLDYNQIE-EIPE-DFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGS  658 (876)
T ss_dssp             TSEESEEECCSSCCS-CCCT-TSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred             CCcceEEECcCCccc-cchH-HHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCC
Confidence            667777777777775 5555 4666777 788888887777 5565555544  37788888877743

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.85  E-value=6.6e-20  Score=142.87  Aligned_cols=65  Identities=20%  Similarity=0.143  Sum_probs=36.2

Q ss_pred             cCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCC
Q 037699          126 QLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVG  191 (203)
Q Consensus       126 ~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~  191 (203)
                      .+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+++..+..+..+++|++|++++|++++
T Consensus       345 ~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          345 NLDKLEVLDLSYNHIRALGDQ-SFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             TCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CcccCCEEECCCCcccccChh-hccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence            345566666666655432232 45556666666666666654444445556666666666666643

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.85  E-value=3e-20  Score=145.68  Aligned_cols=167  Identities=22%  Similarity=0.237  Sum_probs=87.7

Q ss_pred             CcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCc
Q 037699            9 DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL   88 (203)
Q Consensus         9 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L   88 (203)
                      ++++.|++++|.+++..+..+..+++|++|++++|.     +....|..+..+++|++|++++|.++...+..+..+++|
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-----i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  106 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-----VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL  106 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-----CCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTC
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCc-----cCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCC
Confidence            356666666666665555566666666666666664     555555666666666666666666653333445566666


Q ss_pred             cEEEccCCcCCcchhhhhhhccccccCCccccccc-----------cccCCCCCEEEccCCccccccchhhhccCCCccE
Q 037699           89 RSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMT-----------EWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKY  157 (203)
Q Consensus        89 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~-----------~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~  157 (203)
                      ++|++++|.+....+..+..     +.+++.+.+.           ...+++|+.|++++|.+. ..+...+..+++|+.
T Consensus       107 ~~L~Ls~n~i~~~~~~~~~~-----l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~  180 (477)
T 2id5_A          107 TKLDISENKIVILLDYMFQD-----LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIV  180 (477)
T ss_dssp             CEEECTTSCCCEECTTTTTT-----CTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCE
T ss_pred             CEEECCCCccccCChhHccc-----cccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcE
Confidence            66666666655444333321     1112222111           014455666666666554 333334555555555


Q ss_pred             EEccCCccccccCCCCCCCCCccEEEcCC
Q 037699          158 FDVSQNSLTLNVSPDWIPPFQLKELNLES  186 (203)
Q Consensus       158 L~l~~n~~~~~~~~~l~~~~~L~~L~l~~  186 (203)
                      |++++|.+++..+..+..+++|++|++++
T Consensus       181 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~  209 (477)
T 2id5_A          181 LRLRHLNINAIRDYSFKRLYRLKVLEISH  209 (477)
T ss_dssp             EEEESCCCCEECTTCSCSCTTCCEEEEEC
T ss_pred             EeCCCCcCcEeChhhcccCcccceeeCCC
Confidence            55555555543333444444444444433

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.84  E-value=6.4e-21  Score=141.89  Aligned_cols=181  Identities=20%  Similarity=0.217  Sum_probs=137.3

Q ss_pred             ccEEecCCCccC-CCCCcccc-------CCCCccEEeCCCCccccccccccccccc--CCCCCCCEEEccccccCccchh
Q 037699           11 LVFLDLSLNNFQ-GPIPRGLG-------NLTSLRYLDLSANISILQYLSGTFSSSV--GNLTSIQTLDLSFNNLEGKIAT   80 (203)
Q Consensus        11 L~~L~l~~~~~~-~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~~   80 (203)
                      ++.|++++|.+. ...+..+.       .+++|++|++++|.     +.+..|..+  ..+++|++|++++|.+++. |.
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~  138 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE-----VTGTAPPPLLEATGPDLNILNLRNVSWATR-DA  138 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB-----CBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SS
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCc-----ccchhHHHHHHhcCCCccEEEccCCCCcch-hH
Confidence            788899999884 34565554       78999999999997     777778876  8899999999999999966 78


Q ss_pred             hhhcc-----CCccEEEccCCcCCcchhhhhhhccc---cccCCccccc---c--cc--ccCCCCCEEEccCCcccc--c
Q 037699           81 SFGRL-----CKLRSVFLSHSNMNQEISKILNIFST---CILDGLEVLE---M--TE--WQLSSLDSVNLSNNTLFG--S  143 (203)
Q Consensus        81 ~~~~l-----~~L~~L~l~~n~~~~~~~~~~~~~~~---~~~~~l~~l~---~--~~--~~~~~L~~L~l~~n~l~~--~  143 (203)
                      .+..+     ++|++|++++|.+....+..+..+..   ..+.+.....   .  ..  ..+++|+.|++++|.+.+  .
T Consensus       139 ~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  218 (312)
T 1wwl_A          139 WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG  218 (312)
T ss_dssp             HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHH
T ss_pred             HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHH
Confidence            78877     89999999999998776655543221   1122222111   1  11  367899999999999963  2


Q ss_pred             cchhhhccCCCccEEEccCCccccccC-CCCCCCCCccEEEcCCCCCCCCCCchhhh
Q 037699          144 LFEIHFAKLSKLKYFDVSQNSLTLNVS-PDWIPPFQLKELNLESCNLVGNRFPSWLL  199 (203)
Q Consensus       144 ~~~~~l~~~~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~p~~~~  199 (203)
                      .+...+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+  ..+|.++.
T Consensus       219 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l--~~ip~~~~  273 (312)
T 1wwl_A          219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL--KQVPKGLP  273 (312)
T ss_dssp             HHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC--SSCCSSCC
T ss_pred             HHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc--Chhhhhcc
Confidence            333355678999999999999997664 4566688999999999999  47887664

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.84  E-value=7.4e-20  Score=133.84  Aligned_cols=159  Identities=20%  Similarity=0.219  Sum_probs=100.1

Q ss_pred             cccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCc-cchhhhh
Q 037699            5 FGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEG-KIATSFG   83 (203)
Q Consensus         5 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~   83 (203)
                      +..+++|+.|++++|.+++..+..+..+++|++|++++|.     +....+..+..+++|++|++++|.++. .+|..+.
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~  146 (276)
T 2z62_A           72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-----LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS  146 (276)
T ss_dssp             TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-----CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG
T ss_pred             ccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCC-----ccccCchhcccCCCCCEEECcCCccceecCchhhc
Confidence            3444455555555555554444555555556666665554     444444456677777777777777764 3577778


Q ss_pred             ccCCccEEEccCCcCCcchhhhhhhccc-------cccCCcccccc--ccccCCCCCEEEccCCccccccchhhhccCCC
Q 037699           84 RLCKLRSVFLSHSNMNQEISKILNIFST-------CILDGLEVLEM--TEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSK  154 (203)
Q Consensus        84 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~-------~~~~~l~~l~~--~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~  154 (203)
                      .+++|++|++++|.+....+..+..+..       ..+.+.....+  ......+|+.|++++|.+. ..+...+..+++
T Consensus       147 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~  225 (276)
T 2z62_A          147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTS  225 (276)
T ss_dssp             GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCS-CCCTTTTTTCCS
T ss_pred             cCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCcee-ecCHhHhccccc
Confidence            8888888888888877655444432221       11111111111  1224458999999999996 555557789999


Q ss_pred             ccEEEccCCcccccc
Q 037699          155 LKYFDVSQNSLTLNV  169 (203)
Q Consensus       155 L~~L~l~~n~~~~~~  169 (203)
                      |+.|++++|.+++..
T Consensus       226 L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          226 LQKIWLHTNPWDCSC  240 (276)
T ss_dssp             CCEEECCSSCBCCCT
T ss_pred             ccEEEccCCcccccC
Confidence            999999999998643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.84  E-value=5.6e-20  Score=142.87  Aligned_cols=169  Identities=22%  Similarity=0.259  Sum_probs=112.6

Q ss_pred             cccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCcc
Q 037699           10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLR   89 (203)
Q Consensus        10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~   89 (203)
                      ..+.++.++..++ .+|..+.  .+++.|++++|.     +....+..+..+++|++|++++|.++...+..|..+++|+
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~-----i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~  115 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQ-----IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLN  115 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCC-----CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCC
T ss_pred             CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCc-----CCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCC
Confidence            4567888888887 5676554  789999999997     7777788899999999999999999977778899999999


Q ss_pred             EEEccCCcCCcchhhhhhhcc---cccc----------------CCcccccccc------------ccCCCCCEEEccCC
Q 037699           90 SVFLSHSNMNQEISKILNIFS---TCIL----------------DGLEVLEMTE------------WQLSSLDSVNLSNN  138 (203)
Q Consensus        90 ~L~l~~n~~~~~~~~~~~~~~---~~~~----------------~~l~~l~~~~------------~~~~~L~~L~l~~n  138 (203)
                      +|++++|.+....+..+..+.   .+.+                .+++.+.+..            ..+++|+.|++++|
T Consensus       116 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n  195 (440)
T 3zyj_A          116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC  195 (440)
T ss_dssp             EEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS
T ss_pred             EEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC
Confidence            999999999876654443221   1111                1222222111            02344555555555


Q ss_pred             ccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCC
Q 037699          139 TLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNL  189 (203)
Q Consensus       139 ~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l  189 (203)
                      .+. .++  .+..+++|+.|++++|.+++..+..+..+++|++|++++|.+
T Consensus       196 ~l~-~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l  243 (440)
T 3zyj_A          196 NLR-EIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI  243 (440)
T ss_dssp             CCS-SCC--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             cCc-ccc--ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCce
Confidence            543 222  244555566666666666655555566666666666666666

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.84  E-value=2.9e-20  Score=149.59  Aligned_cols=188  Identities=14%  Similarity=0.113  Sum_probs=139.7

Q ss_pred             ccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhh
Q 037699            4 VFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFG   83 (203)
Q Consensus         4 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~   83 (203)
                      .+..+++|+.|++++|.+++..+..+..+++|++|++++|.     +....|..+..+++|++|++++|.++...+..|.
T Consensus        70 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~  144 (597)
T 3oja_B           70 LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-----IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH  144 (597)
T ss_dssp             HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-----CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             HHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-----CCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhc
Confidence            45566799999999999997777899999999999999997     7788788889999999999999999854455578


Q ss_pred             ccCCccEEEccCCcCCcchhhhhhhccc---cccCCccccccccccC---------------------------------
Q 037699           84 RLCKLRSVFLSHSNMNQEISKILNIFST---CILDGLEVLEMTEWQL---------------------------------  127 (203)
Q Consensus        84 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~---~~~~~l~~l~~~~~~~---------------------------------  127 (203)
                      .+++|++|++++|.+....+..+..+..   +.+.+...-.++...+                                 
T Consensus       145 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~  224 (597)
T 3oja_B          145 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN  224 (597)
T ss_dssp             TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCC
T ss_pred             cCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCccc
Confidence            9999999999999998776655443211   1111111111111111                                 


Q ss_pred             -------CCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhc
Q 037699          128 -------SSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLS  200 (203)
Q Consensus       128 -------~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~  200 (203)
                             ++|+.|++++|.+.+  +. .+..+++|+.|++++|.+++..+..+..+++|+.|+|++|.+  ..+|..+..
T Consensus       225 ~~~~~~~~~L~~L~L~~n~l~~--~~-~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l--~~l~~~~~~  299 (597)
T 3oja_B          225 VVRGPVNVELTILKLQHNNLTD--TA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL--VALNLYGQP  299 (597)
T ss_dssp             EEECSCCSCCCEEECCSSCCCC--CG-GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCC--CEEECSSSC
T ss_pred             ccccccCCCCCEEECCCCCCCC--Ch-hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCC--CCCCccccc
Confidence                   245556666666543  22 577889999999999999988888889999999999999998  345655544


Q ss_pred             c
Q 037699          201 Q  201 (203)
Q Consensus       201 ~  201 (203)
                      +
T Consensus       300 l  300 (597)
T 3oja_B          300 I  300 (597)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.84  E-value=3.8e-20  Score=149.04  Aligned_cols=92  Identities=29%  Similarity=0.378  Sum_probs=63.9

Q ss_pred             ccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchh-hh
Q 037699            4 VFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIAT-SF   82 (203)
Q Consensus         4 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~   82 (203)
                      .+..+++|+.|++++|.++ .+|..+..+++|++|++++|.     +....|..+..+++|++|++++|.+.+.++. .+
T Consensus       273 ~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  346 (606)
T 3t6q_A          273 TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANK-----FENLCQISASNFPSLTHLSIKGNTKRLELGTGCL  346 (606)
T ss_dssp             TTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCC-----CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred             HhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCC-----cCcCchhhhhccCcCCEEECCCCCcccccchhhh
Confidence            4666678888888888887 677778888888888888886     5555566666667777777777666544433 35


Q ss_pred             hccCCccEEEccCCcCCcc
Q 037699           83 GRLCKLRSVFLSHSNMNQE  101 (203)
Q Consensus        83 ~~l~~L~~L~l~~n~~~~~  101 (203)
                      ..+++|++|++++|.+...
T Consensus       347 ~~l~~L~~L~l~~n~l~~~  365 (606)
T 3t6q_A          347 ENLENLRELDLSHDDIETS  365 (606)
T ss_dssp             TTCTTCCEEECCSSCCCEE
T ss_pred             hccCcCCEEECCCCccccc
Confidence            6666666666666666543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.84  E-value=2.4e-20  Score=141.04  Aligned_cols=158  Identities=22%  Similarity=0.211  Sum_probs=113.4

Q ss_pred             CcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCc
Q 037699            9 DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL   88 (203)
Q Consensus         9 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L   88 (203)
                      ++|+.|++++|.+++..+..+..+++|++|++++|.     +.+..+..+..+++|++|++++|.++...+..+..+++|
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  126 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-----INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSL  126 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-----CCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTC
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-----cCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccC
Confidence            489999999999987666688999999999999996     777777888999999999999999985555558889999


Q ss_pred             cEEEccCCcCCcchh-hhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCcccc
Q 037699           89 RSVFLSHSNMNQEIS-KILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTL  167 (203)
Q Consensus        89 ~~L~l~~n~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~  167 (203)
                      ++|++++|.+..... ..+.                  .+++|+.|++++|...+..+...+..+++|+.|++++|.+++
T Consensus       127 ~~L~L~~n~l~~l~~~~~~~------------------~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  188 (353)
T 2z80_A          127 TFLNLLGNPYKTLGETSLFS------------------HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS  188 (353)
T ss_dssp             SEEECTTCCCSSSCSSCSCT------------------TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             CEEECCCCCCcccCchhhhc------------------cCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence            999999998875433 2222                  455666666666632223333345566666666666666665


Q ss_pred             ccCCCCCCCCCccEEEcCCCCC
Q 037699          168 NVSPDWIPPFQLKELNLESCNL  189 (203)
Q Consensus       168 ~~~~~l~~~~~L~~L~l~~n~l  189 (203)
                      ..+..+..+++|++|++++|.+
T Consensus       189 ~~~~~l~~l~~L~~L~l~~n~l  210 (353)
T 2z80_A          189 YEPKSLKSIQNVSHLILHMKQH  210 (353)
T ss_dssp             ECTTTTTTCSEEEEEEEECSCS
T ss_pred             cCHHHHhccccCCeecCCCCcc
Confidence            5555566666666666666655

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.84  E-value=7.1e-20  Score=147.42  Aligned_cols=189  Identities=25%  Similarity=0.234  Sum_probs=117.4

Q ss_pred             ccccCCcccEEecCCCccCCCC--CccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchh-
Q 037699            4 VFGLSDHLVFLDLSLNNFQGPI--PRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIAT-   80 (203)
Q Consensus         4 ~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-   80 (203)
                      .+..+++|+.|++++|.+++..  +..+..+++|++|++++|.     +.+..+..+..+++|++|++++|.+++..+. 
T Consensus       345 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  419 (606)
T 3t6q_A          345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-----PLSLKTEAFKECPQLELLDLAFTRLKVKDAQS  419 (606)
T ss_dssp             TTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-----CEEECTTTTTTCTTCSEEECTTCCEECCTTCC
T ss_pred             hhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-----CCcCCHHHhcCCccCCeEECCCCcCCCcccch
Confidence            3556667888888888776543  5667777788888888775     6666667777777777777777777654443 


Q ss_pred             hhhccCCccEEEccCCcCCcchhhhhhhc---cccccCCccccc--cc----cccCCCCCEEEccCCccccccchhhhcc
Q 037699           81 SFGRLCKLRSVFLSHSNMNQEISKILNIF---STCILDGLEVLE--MT----EWQLSSLDSVNLSNNTLFGSLFEIHFAK  151 (203)
Q Consensus        81 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~---~~~~~~~l~~l~--~~----~~~~~~L~~L~l~~n~l~~~~~~~~l~~  151 (203)
                      .+..+++|++|++++|.+....+..+..+   ....+.+.....  ++    ...+++|+.|++++|.+.+..+. .+..
T Consensus       420 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~  498 (606)
T 3t6q_A          420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH-AFTS  498 (606)
T ss_dssp             TTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTT-TTTT
T ss_pred             hhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChh-hhcc
Confidence            36677777777777777765544443321   111111111100  00    11456777777777777543333 5667


Q ss_pred             CCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhc
Q 037699          152 LSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLS  200 (203)
Q Consensus       152 ~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~  200 (203)
                      +++|+.|++++|.+++..+..+..+++| +|++++|.+ ....|..+..
T Consensus       499 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l-~~~~~~~~~~  545 (606)
T 3t6q_A          499 LKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHI-SIILPSLLPI  545 (606)
T ss_dssp             CTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCC-CCCCGGGHHH
T ss_pred             ccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcc-cccCHhhccc
Confidence            7777777777777776666666777777 777777777 3334444443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.83  E-value=2.1e-20  Score=154.99  Aligned_cols=165  Identities=13%  Similarity=0.183  Sum_probs=113.4

Q ss_pred             CCccccCCCCccEEeCCCCccccccccc-----------------ccccccC--CCCCCCEEEccccccCccchhhhhcc
Q 037699           25 IPRGLGNLTSLRYLDLSANISILQYLSG-----------------TFSSSVG--NLTSIQTLDLSFNNLEGKIATSFGRL   85 (203)
Q Consensus        25 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~-----------------~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~l   85 (203)
                      +|..+.++++|++|++++|.     +.+                 .+|..+.  .+++|++|++++|.+.+.+|..++.+
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~-----Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L  514 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSP-----FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL  514 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCC-----CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred             hhHHHhcCCCCCEEECcCCc-----CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence            56677788888888888886     554                 2677776  88888888888888877888888888


Q ss_pred             CCccEEEccCCc-CCc-chhhhhhhcc----------ccccCCcccccccc----ccCCCCCEEEccCCccccccchhhh
Q 037699           86 CKLRSVFLSHSN-MNQ-EISKILNIFS----------TCILDGLEVLEMTE----WQLSSLDSVNLSNNTLFGSLFEIHF  149 (203)
Q Consensus        86 ~~L~~L~l~~n~-~~~-~~~~~~~~~~----------~~~~~~l~~l~~~~----~~~~~L~~L~l~~n~l~~~~~~~~l  149 (203)
                      ++|++|++++|. +.+ ..|..+..+.          .+.+.+...-.+|.    ..+++|+.|++++|.+. .++  .+
T Consensus       515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~  591 (876)
T 4ecn_A          515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE--AF  591 (876)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC--CC
T ss_pred             CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch--hh
Confidence            888888888887 665 5555443322          11122222223333    25677777777777775 555  56


Q ss_pred             ccCCCccEEEccCCccccccCCCCCCCCC-ccEEEcCCCCCCCCCCchhhhc
Q 037699          150 AKLSKLKYFDVSQNSLTLNVSPDWIPPFQ-LKELNLESCNLVGNRFPSWLLS  200 (203)
Q Consensus       150 ~~~~~L~~L~l~~n~~~~~~~~~l~~~~~-L~~L~l~~n~l~~~~~p~~~~~  200 (203)
                      +.+++|+.|++++|.++ .+|..+..+++ |+.|++++|.+  ..+|.++..
T Consensus       592 ~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L--~~lp~~~~~  640 (876)
T 4ecn_A          592 GTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL--KYIPNIFNA  640 (876)
T ss_dssp             CTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCC--CSCCSCCCT
T ss_pred             cCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCC--CcCchhhhc
Confidence            77777777788777777 66666777777 88888888777  366766544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.83  E-value=3.8e-19  Score=126.71  Aligned_cols=156  Identities=19%  Similarity=0.168  Sum_probs=129.6

Q ss_pred             cccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCcc
Q 037699           10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLR   89 (203)
Q Consensus        10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~   89 (203)
                      .-+.++++++.++ .+|..+.  ++|++|++++|.     +....+..+..+++|++|++++|.++...+..+..+++|+
T Consensus        20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~-----i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~   91 (229)
T 3e6j_A           20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQ-----ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLT   91 (229)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSC-----CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCc-----cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcC
Confidence            4567888888887 5665543  889999999997     7777788899999999999999999855556678999999


Q ss_pred             EEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCcccccc
Q 037699           90 SVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNV  169 (203)
Q Consensus        90 ~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~  169 (203)
                      +|++++|.+....+..+.                  .+++|+.|++++|.+. .++. .+..+++|+.|++++|.++...
T Consensus        92 ~L~Ls~N~l~~l~~~~~~------------------~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~L~~N~l~~~~  151 (229)
T 3e6j_A           92 VLDLGTNQLTVLPSAVFD------------------RLVHLKELFMCCNKLT-ELPR-GIERLTHLTHLALDQNQLKSIP  151 (229)
T ss_dssp             EEECCSSCCCCCCTTTTT------------------TCTTCCEEECCSSCCC-SCCT-TGGGCTTCSEEECCSSCCCCCC
T ss_pred             EEECCCCcCCccChhHhC------------------cchhhCeEeccCCccc-ccCc-ccccCCCCCEEECCCCcCCccC
Confidence            999999998866555444                  6789999999999996 6666 5788999999999999999666


Q ss_pred             CCCCCCCCCccEEEcCCCCCCCCC
Q 037699          170 SPDWIPPFQLKELNLESCNLVGNR  193 (203)
Q Consensus       170 ~~~l~~~~~L~~L~l~~n~l~~~~  193 (203)
                      +..+..+++|+.|++++|.+.++.
T Consensus       152 ~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          152 HGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             TTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             HHHHhCCCCCCEEEeeCCCccCCc
Confidence            667888999999999999996553

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.83  E-value=3.9e-19  Score=133.18  Aligned_cols=178  Identities=20%  Similarity=0.230  Sum_probs=125.7

Q ss_pred             CcccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCc--cch
Q 037699            2 PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEG--KIA   79 (203)
Q Consensus         2 p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~   79 (203)
                      |..+..+++|+.|++++|.++ .+|..+.  ++|++|++++|.     +....+..+..+++|++|++++|.+..  ..+
T Consensus        93 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  164 (330)
T 1xku_A           93 PGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENE-----ITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN  164 (330)
T ss_dssp             TTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSC-----CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCT
T ss_pred             HHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCc-----ccccCHhHhcCCccccEEECCCCcCCccCcCh
Confidence            556777789999999999988 5565543  789999999986     777767778889999999999998863  556


Q ss_pred             hhhhccCCccEEEccCCcCCcchhhhhhhccccccCCccccccc---cccCCCCCEEEccCCccccccchhhhccCCCcc
Q 037699           80 TSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMT---EWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLK  156 (203)
Q Consensus        80 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~  156 (203)
                      ..+..+++|+++++++|.+..........+....+.+......+   ...+++|+.|++++|.+.+. +...+..+++|+
T Consensus       165 ~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~  243 (330)
T 1xku_A          165 GAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV-DNGSLANTPHLR  243 (330)
T ss_dssp             TGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE-CTTTGGGSTTCC
T ss_pred             hhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee-ChhhccCCCCCC
Confidence            77888889999999888876543322222222222222211111   11567788888888877543 333567778888


Q ss_pred             EEEccCCccccccCCCCCCCCCccEEEcCCCCC
Q 037699          157 YFDVSQNSLTLNVSPDWIPPFQLKELNLESCNL  189 (203)
Q Consensus       157 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l  189 (203)
                      .|++++|.++ .+|..+..+++|++|++++|.+
T Consensus       244 ~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i  275 (330)
T 1xku_A          244 ELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI  275 (330)
T ss_dssp             EEECCSSCCS-SCCTTTTTCSSCCEEECCSSCC
T ss_pred             EEECCCCcCc-cCChhhccCCCcCEEECCCCcC
Confidence            8888888877 5666677777888888888877

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.83  E-value=3.6e-20  Score=147.50  Aligned_cols=157  Identities=23%  Similarity=0.269  Sum_probs=118.3

Q ss_pred             CcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCc
Q 037699            9 DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL   88 (203)
Q Consensus         9 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L   88 (203)
                      +++++|++++|.+++..+..+..+++|++|++++|.     +.+..|..+..+++|++|++++|.+++..+..++.+++|
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-----i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  100 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-----INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL  100 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC-----CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCC-----cCccChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence            589999999999998788899999999999999997     777778889999999999999999997777779999999


Q ss_pred             cEEEccCCcCCcc-hhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCcccc
Q 037699           89 RSVFLSHSNMNQE-ISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTL  167 (203)
Q Consensus        89 ~~L~l~~n~~~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~  167 (203)
                      ++|++++|.+... .+..+.                  .+++|+.|++++|.+.+..+...+..+++|+.|++++|.+++
T Consensus       101 ~~L~Ls~n~l~~~~~~~~~~------------------~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  162 (549)
T 2z81_A          101 KYLNLMGNPYQTLGVTSLFP------------------NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN  162 (549)
T ss_dssp             CEEECTTCCCSSSCSSCSCT------------------TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             cEEECCCCcccccchhhhhh------------------ccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence            9999999988753 222222                  456677777777664344444356666777777777777666


Q ss_pred             ccCCCCCCCCCccEEEcCCCC
Q 037699          168 NVSPDWIPPFQLKELNLESCN  188 (203)
Q Consensus       168 ~~~~~l~~~~~L~~L~l~~n~  188 (203)
                      ..+..+..+++|++|++++|.
T Consensus       163 ~~~~~l~~l~~L~~L~l~~n~  183 (549)
T 2z81_A          163 YQSQSLKSIRDIHHLTLHLSE  183 (549)
T ss_dssp             ECTTTTTTCSEEEEEEEECSB
T ss_pred             cChhhhhccccCceEecccCc
Confidence            555555554444444444433

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.83  E-value=4.8e-20  Score=132.12  Aligned_cols=179  Identities=16%  Similarity=0.118  Sum_probs=126.0

Q ss_pred             CcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccc-cccCccchhhhhccCC
Q 037699            9 DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSF-NNLEGKIATSFGRLCK   87 (203)
Q Consensus         9 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~   87 (203)
                      ++++.|++++|.++...+..+..+++|++|++++|.    .+....+..+..+++|++|++++ |.++...+..|..+++
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~----~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~  106 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV----TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPL  106 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCS----SCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTT
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCC----CcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCC
Confidence            478888888888886666678888888888888883    03344445677888888888887 8887555567788888


Q ss_pred             ccEEEccCCcCCcchhhhhhhcc------ccccCCc-ccccccc---ccCCCCC-EEEccCCccccccchhhhccCCCcc
Q 037699           88 LRSVFLSHSNMNQEISKILNIFS------TCILDGL-EVLEMTE---WQLSSLD-SVNLSNNTLFGSLFEIHFAKLSKLK  156 (203)
Q Consensus        88 L~~L~l~~n~~~~~~~~~~~~~~------~~~~~~l-~~l~~~~---~~~~~L~-~L~l~~n~l~~~~~~~~l~~~~~L~  156 (203)
                      |++|++++|.+.... . +..+.      ...+.+. ..-.++.   ..+++|+ .+++++|.+. .++...+.. ++|+
T Consensus       107 L~~L~l~~n~l~~lp-~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~  182 (239)
T 2xwt_C          107 LKFLGIFNTGLKMFP-D-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLD  182 (239)
T ss_dssp             CCEEEEEEECCCSCC-C-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEE
T ss_pred             CCEEeCCCCCCcccc-c-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCC
Confidence            888888888776532 2 21111      1111111 1111111   1577899 9999999996 666645555 8899


Q ss_pred             EEEccCCc-cccccCCCCCCC-CCccEEEcCCCCCCCCCCchh
Q 037699          157 YFDVSQNS-LTLNVSPDWIPP-FQLKELNLESCNLVGNRFPSW  197 (203)
Q Consensus       157 ~L~l~~n~-~~~~~~~~l~~~-~~L~~L~l~~n~l~~~~~p~~  197 (203)
                      .|++++|+ ++...+..+..+ ++|++|++++|.+  ..+|..
T Consensus       183 ~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l--~~l~~~  223 (239)
T 2xwt_C          183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV--TALPSK  223 (239)
T ss_dssp             EEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC--CCCCCT
T ss_pred             EEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc--ccCChh
Confidence            99999995 886656678888 8999999999999  445543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.82  E-value=2.3e-19  Score=146.32  Aligned_cols=93  Identities=23%  Similarity=0.205  Sum_probs=47.4

Q ss_pred             ccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhcc
Q 037699            6 GLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRL   85 (203)
Q Consensus         6 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l   85 (203)
                      +.+++|++|++++|.++...+..++.+.+|++|++++|.     +.+..+..+..+++|++|++++|.+++..+..+..+
T Consensus        70 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  144 (680)
T 1ziw_A           70 QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS-----IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL  144 (680)
T ss_dssp             HHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-----CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCC
T ss_pred             hcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCc-----cCccChhHccccCCCCEEECCCCcccccCchhhccc
Confidence            334445555555555443333345555555555555554     444444455555555555555555554444445555


Q ss_pred             CCccEEEccCCcCCcchh
Q 037699           86 CKLRSVFLSHSNMNQEIS  103 (203)
Q Consensus        86 ~~L~~L~l~~n~~~~~~~  103 (203)
                      ++|++|++++|.+....+
T Consensus       145 ~~L~~L~L~~n~l~~~~~  162 (680)
T 1ziw_A          145 ENLQELLLSNNKIQALKS  162 (680)
T ss_dssp             TTCCEEECCSSCCCCBCH
T ss_pred             ccCCEEEccCCcccccCH
Confidence            555555555555544433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.82  E-value=1.8e-19  Score=125.46  Aligned_cols=151  Identities=17%  Similarity=0.251  Sum_probs=127.2

Q ss_pred             cCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccC
Q 037699            7 LSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLC   86 (203)
Q Consensus         7 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~   86 (203)
                      .+++|+.|++++|.+. .++ .+..+++|++|++++|.     +..  +..+..+++|++|++++|.+++..+..+..++
T Consensus        42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~-----~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~  112 (197)
T 4ezg_A           42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIH-----ATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLT  112 (197)
T ss_dssp             HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCC-----CSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT
T ss_pred             hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCC-----CCc--chhhhcCCCCCEEEeECCccCcccChhhcCCC
Confidence            3458999999999998 556 68899999999999995     333  23688899999999999999977788899999


Q ss_pred             CccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCc-cccccchhhhccCCCccEEEccCCcc
Q 037699           87 KLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNT-LFGSLFEIHFAKLSKLKYFDVSQNSL  165 (203)
Q Consensus        87 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~-l~~~~~~~~l~~~~~L~~L~l~~n~~  165 (203)
                      +|++|++++|.+....+..+.                  .+++|+.|++++|. + ...+  .+..+++|+.|++++|.+
T Consensus       113 ~L~~L~Ls~n~i~~~~~~~l~------------------~l~~L~~L~L~~n~~i-~~~~--~l~~l~~L~~L~l~~n~i  171 (197)
T 4ezg_A          113 SLTLLDISHSAHDDSILTKIN------------------TLPKVNSIDLSYNGAI-TDIM--PLKTLPELKSLNIQFDGV  171 (197)
T ss_dssp             TCCEEECCSSBCBGGGHHHHT------------------TCSSCCEEECCSCTBC-CCCG--GGGGCSSCCEEECTTBCC
T ss_pred             CCCEEEecCCccCcHhHHHHh------------------hCCCCCEEEccCCCCc-cccH--hhcCCCCCCEEECCCCCC
Confidence            999999999999876666555                  68899999999998 6 3554  578999999999999999


Q ss_pred             ccccCCCCCCCCCccEEEcCCCCC
Q 037699          166 TLNVSPDWIPPFQLKELNLESCNL  189 (203)
Q Consensus       166 ~~~~~~~l~~~~~L~~L~l~~n~l  189 (203)
                      ++ ++ .+..+++|++|++++|+|
T Consensus       172 ~~-~~-~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          172 HD-YR-GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             CC-CT-TGGGCSSCCEEEECBC--
T ss_pred             cC-hH-HhccCCCCCEEEeeCccc
Confidence            85 33 678899999999999998

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.82  E-value=2e-20  Score=141.41  Aligned_cols=182  Identities=22%  Similarity=0.176  Sum_probs=105.3

Q ss_pred             ccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchh--h
Q 037699            4 VFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIAT--S   81 (203)
Q Consensus         4 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~   81 (203)
                      .+..+++|+.|++++|.+++..+..+..+++|++|++++|.     +....+..+..+++|++|++++|.++ .++.  .
T Consensus        71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~  144 (353)
T 2z80_A           71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-----LSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSL  144 (353)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-----CSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCS
T ss_pred             HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-----CCcCCHhHhCCCccCCEEECCCCCCc-ccCchhh
Confidence            45555677777777777765556666677777777777764     44444444566666666666666665 3332  4


Q ss_pred             hhccCCccEEEccCCc-CCcchhhhhhhccc---cc----------------cCCccccccccc-----------cCCCC
Q 037699           82 FGRLCKLRSVFLSHSN-MNQEISKILNIFST---CI----------------LDGLEVLEMTEW-----------QLSSL  130 (203)
Q Consensus        82 ~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~---~~----------------~~~l~~l~~~~~-----------~~~~L  130 (203)
                      +..+++|++|++++|. +....+..+..+..   ..                +.+++.+.+...           .+++|
T Consensus       145 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L  224 (353)
T 2z80_A          145 FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSV  224 (353)
T ss_dssp             CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTE
T ss_pred             hccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccc
Confidence            5566666666666652 33332222211100   00                112222222111           35677


Q ss_pred             CEEEccCCccccccc------------------------------hhhhccCCCccEEEccCCccccccCCC-CCCCCCc
Q 037699          131 DSVNLSNNTLFGSLF------------------------------EIHFAKLSKLKYFDVSQNSLTLNVSPD-WIPPFQL  179 (203)
Q Consensus       131 ~~L~l~~n~l~~~~~------------------------------~~~l~~~~~L~~L~l~~n~~~~~~~~~-l~~~~~L  179 (203)
                      +.|++++|.+.+..+                              ...+..+++|+.|++++|.++ .++.. +..+++|
T Consensus       225 ~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L  303 (353)
T 2z80_A          225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSL  303 (353)
T ss_dssp             EEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred             cEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCC
Confidence            777777777653210                              113567788888888888888 44444 5778888


Q ss_pred             cEEEcCCCCCCCC
Q 037699          180 KELNLESCNLVGN  192 (203)
Q Consensus       180 ~~L~l~~n~l~~~  192 (203)
                      ++|++++|++.++
T Consensus       304 ~~L~L~~N~~~~~  316 (353)
T 2z80_A          304 QKIWLHTNPWDCS  316 (353)
T ss_dssp             CEEECCSSCBCCC
T ss_pred             CEEEeeCCCccCc
Confidence            8888888888543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.81  E-value=1.5e-19  Score=142.11  Aligned_cols=181  Identities=23%  Similarity=0.248  Sum_probs=105.5

Q ss_pred             CCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchh-------
Q 037699            8 SDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIAT-------   80 (203)
Q Consensus         8 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-------   80 (203)
                      +++|+.|++++|.+++..|..+..+++|++|++++|.     +.+..|  +..+++|++|++++|.+++..+.       
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-----l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~  105 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-----LYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLH  105 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-----CEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-----CCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEE
Confidence            3489999999999997777889999999999999996     555444  78888899999988887632111       


Q ss_pred             ---------hhhccCCccEEEccCCcCCcchhhhhhhc---cccccCCccccc--cccc--cCCCCCEEEccCCcccccc
Q 037699           81 ---------SFGRLCKLRSVFLSHSNMNQEISKILNIF---STCILDGLEVLE--MTEW--QLSSLDSVNLSNNTLFGSL  144 (203)
Q Consensus        81 ---------~~~~l~~L~~L~l~~n~~~~~~~~~~~~~---~~~~~~~l~~l~--~~~~--~~~~L~~L~l~~n~l~~~~  144 (203)
                               ....+++|+.|++++|.+.+..+..+..+   ..+.+.+.....  ....  .+++|+.|++++|.+.+. 
T Consensus       106 L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-  184 (487)
T 3oja_A          106 AANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-  184 (487)
T ss_dssp             CCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred             CcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-
Confidence                     00123445555555555544433222211   111111111111  1111  345666666666666432 


Q ss_pred             chhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhcc
Q 037699          145 FEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQ  201 (203)
Q Consensus       145 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~  201 (203)
                      +.  ...+++|+.|++++|.+++ +++.+..+++|+.|++++|.+  ..+|.++..+
T Consensus       185 ~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l--~~lp~~l~~l  236 (487)
T 3oja_A          185 KG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKL--VLIEKALRFS  236 (487)
T ss_dssp             EC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCC--CEECTTCCCC
T ss_pred             cc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcC--cccchhhccC
Confidence            21  2346666666666666664 333456666777777777776  2356555443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.81  E-value=7.7e-20  Score=152.33  Aligned_cols=181  Identities=22%  Similarity=0.251  Sum_probs=122.9

Q ss_pred             cCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCccccccccc-ccccccCCCCCCCEEEccccccCccchhhhhcc
Q 037699            7 LSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSG-TFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRL   85 (203)
Q Consensus         7 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l   85 (203)
                      ..++++.|++++|.++...+..+..+.+|++|++++|.     ... ..|..+..+++|++|++++|.+++..|..|..+
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~-----~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l   96 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY-----TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL   96 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTC-----CCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSC
T ss_pred             CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCC-----CccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCC
Confidence            44688999999999887778888999999999999885     333 337778888999999999999887778888899


Q ss_pred             CCccEEEccCCcCCcchhhh--hhhccccccCCcccccc----------c--cccCCCCCEEEccCCccccccchhhhcc
Q 037699           86 CKLRSVFLSHSNMNQEISKI--LNIFSTCILDGLEVLEM----------T--EWQLSSLDSVNLSNNTLFGSLFEIHFAK  151 (203)
Q Consensus        86 ~~L~~L~l~~n~~~~~~~~~--~~~~~~~~~~~l~~l~~----------~--~~~~~~L~~L~l~~n~l~~~~~~~~l~~  151 (203)
                      ++|++|++++|.+.+..+..  +..     +.+++.+++          +  ...+++|+.|++++|.+.+..+. .+..
T Consensus        97 ~~L~~L~Ls~n~l~~~~~~~~~~~~-----L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~-~l~~  170 (844)
T 3j0a_A           97 FHLFELRLYFCGLSDAVLKDGYFRN-----LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH-ELEP  170 (844)
T ss_dssp             SSCCCEECTTCCCSSCCSTTCCCSS-----CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG-GGHH
T ss_pred             cccCEeeCcCCCCCcccccCccccc-----cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH-Hccc
Confidence            99999999988887643322  221     122222211          1  11566677777777766543333 3444


Q ss_pred             C--CCccEEEccCCccccccCCCCCCCCC------ccEEEcCCCCCCCCCCchhhh
Q 037699          152 L--SKLKYFDVSQNSLTLNVSPDWIPPFQ------LKELNLESCNLVGNRFPSWLL  199 (203)
Q Consensus       152 ~--~~L~~L~l~~n~~~~~~~~~l~~~~~------L~~L~l~~n~l~~~~~p~~~~  199 (203)
                      +  ++|+.|++++|.+.+..+..+..+++      |++|++++|.+ ....|..+.
T Consensus       171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~~~  225 (844)
T 3j0a_A          171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW-TVDITGNFS  225 (844)
T ss_dssp             HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCS-STTTTSGGG
T ss_pred             ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcC-chhHHHHHH
Confidence            4  66777777777766655555554443      88888888887 444555444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.81  E-value=7.6e-20  Score=136.39  Aligned_cols=183  Identities=22%  Similarity=0.250  Sum_probs=108.4

Q ss_pred             ccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchh-----
Q 037699            6 GLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIAT-----   80 (203)
Q Consensus         6 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-----   80 (203)
                      ...++|+.|++++|.+++..+..+..+++|++|++++|.     +.+..+  +..+++|++|++++|.+++..+.     
T Consensus        31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-----l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~  103 (317)
T 3o53_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-----LYETLD--LESLSTLRTLDLNNNYVQELLVGPSIET  103 (317)
T ss_dssp             TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-----CEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCE
T ss_pred             ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-----CCcchh--hhhcCCCCEEECcCCccccccCCCCcCE
Confidence            345689999999999997777888999999999999996     554443  78888899999988887632110     


Q ss_pred             -----------hhhccCCccEEEccCCcCCcchhhhhhh---ccccccCCcccccc--ccc--cCCCCCEEEccCCcccc
Q 037699           81 -----------SFGRLCKLRSVFLSHSNMNQEISKILNI---FSTCILDGLEVLEM--TEW--QLSSLDSVNLSNNTLFG  142 (203)
Q Consensus        81 -----------~~~~l~~L~~L~l~~n~~~~~~~~~~~~---~~~~~~~~l~~l~~--~~~--~~~~L~~L~l~~n~l~~  142 (203)
                                 ....+++|++|++++|.+....+..+..   +....+.+......  ...  .+++|+.|++++|.+.+
T Consensus       104 L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  183 (317)
T 3o53_A          104 LHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD  183 (317)
T ss_dssp             EECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             EECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence                       0012334555555555554433322221   11111111111111  111  34667777777766642


Q ss_pred             ccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhcc
Q 037699          143 SLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQ  201 (203)
Q Consensus       143 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~  201 (203)
                       .+.  ...+++|+.|++++|.+++ +++.+..+++|++|++++|.+  ..+|..+..+
T Consensus       184 -~~~--~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l--~~l~~~~~~l  236 (317)
T 3o53_A          184 -VKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKL--VLIEKALRFS  236 (317)
T ss_dssp             -EEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCC--CEECTTCCCC
T ss_pred             -ccc--ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcc--cchhhHhhcC
Confidence             222  2246677777777777764 334466677777777777777  3466655544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.81  E-value=7.5e-20  Score=136.41  Aligned_cols=187  Identities=18%  Similarity=0.176  Sum_probs=137.7

Q ss_pred             cccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccc--------------cccccccccCCCCCCCEEE
Q 037699            3 WVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQY--------------LSGTFSSSVGNLTSIQTLD   68 (203)
Q Consensus         3 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--------------~~~~~~~~l~~~~~L~~L~   68 (203)
                      ..+..+++|+.|++++|.+++..+  +..+++|++|++++|....-.              +....   ...+++|++|+
T Consensus        52 ~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~---~~~~~~L~~L~  126 (317)
T 3o53_A           52 ADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVS---CSRGQGKKNIY  126 (317)
T ss_dssp             HHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEE---ECCCSSCEEEE
T ss_pred             HHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcC---ccccCCCCEEE
Confidence            345667789999999998875443  778888888888888521100              11111   12356788899


Q ss_pred             ccccccCccchhhhhccCCccEEEccCCcCCcchhhhhh-hccccccCCccccccc--------c-ccCCCCCEEEccCC
Q 037699           69 LSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILN-IFSTCILDGLEVLEMT--------E-WQLSSLDSVNLSNN  138 (203)
Q Consensus        69 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~~~~~~l~~l~~~--------~-~~~~~L~~L~l~~n  138 (203)
                      +++|.++...+..+..+++|++|++++|.+....+..+. .     +..++.+.+.        . ..+++|+.|++++|
T Consensus       127 l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-----l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N  201 (317)
T 3o53_A          127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS-----SDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSN  201 (317)
T ss_dssp             CCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGG-----TTTCCEEECTTSCCCEEECCCCCTTCCEEECCSS
T ss_pred             CCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhc-----cCcCCEEECCCCcCcccccccccccCCEEECCCC
Confidence            999998866677888999999999999999876554331 1     2333333322        1 15789999999999


Q ss_pred             ccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhccc
Q 037699          139 TLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQK  202 (203)
Q Consensus       139 ~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~~  202 (203)
                      .+. ..+. .+..+++|+.|++++|.++ .++..+..+++|+.|++++|.+.++.+|.++..++
T Consensus       202 ~l~-~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~  262 (317)
T 3o53_A          202 KLA-FMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ  262 (317)
T ss_dssp             CCC-EECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCH
T ss_pred             cCC-cchh-hhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccc
Confidence            996 4555 4788999999999999999 56778889999999999999996567788777653

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.81  E-value=9.2e-19  Score=145.88  Aligned_cols=97  Identities=27%  Similarity=0.238  Sum_probs=73.9

Q ss_pred             CcccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccc--cCCCCCCCEEEccccccCccch
Q 037699            2 PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSS--VGNLTSIQTLDLSFNNLEGKIA   79 (203)
Q Consensus         2 p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~--l~~~~~L~~L~l~~~~~~~~~~   79 (203)
                      |..+..+++|++|++++|.+.+..|..+..+.+|++|++++|.     +.+..+..  +..+++|++|++++|.+++..+
T Consensus        66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~-----l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~  140 (844)
T 3j0a_A           66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCG-----LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL  140 (844)
T ss_dssp             TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCC-----CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC
T ss_pred             HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCC-----CCcccccCccccccCCCCEEECCCCccccccc
Confidence            4456777788888888888887778888888888888888886     55544444  7788888888888888875433


Q ss_pred             -hhhhccCCccEEEccCCcCCcchh
Q 037699           80 -TSFGRLCKLRSVFLSHSNMNQEIS  103 (203)
Q Consensus        80 -~~~~~l~~L~~L~l~~n~~~~~~~  103 (203)
                       ..++.+++|++|++++|.+....+
T Consensus       141 ~~~~~~L~~L~~L~Ls~N~i~~~~~  165 (844)
T 3j0a_A          141 HPSFGKLNSLKSIDFSSNQIFLVCE  165 (844)
T ss_dssp             CGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred             chhHhhCCCCCEEECCCCcCCeeCH
Confidence             568888888888888887765433

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.81  E-value=2.6e-18  Score=120.60  Aligned_cols=154  Identities=24%  Similarity=0.248  Sum_probs=127.3

Q ss_pred             ccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCccE
Q 037699           11 LVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRS   90 (203)
Q Consensus        11 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   90 (203)
                      -+.++++++.++ .+|..+  ..++++|++++|.     +....+..+..+++|++|++++|.++...+..+..+++|++
T Consensus         9 ~~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   80 (208)
T 2o6s_A            9 GTTVECYSQGRT-SVPTGI--PAQTTYLDLETNS-----LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTY   80 (208)
T ss_dssp             TTEEECCSSCCS-SCCSCC--CTTCSEEECCSSC-----CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCEEEecCCCcc-CCCCCC--CCCCcEEEcCCCc-----cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCE
Confidence            357788888877 455444  4689999999997     77766777889999999999999999665666789999999


Q ss_pred             EEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccC
Q 037699           91 VFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVS  170 (203)
Q Consensus        91 L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~  170 (203)
                      |++++|.+....+..+.                  .+++|+.|++++|.+. ..+...+..+++|+.|++++|.+++..+
T Consensus        81 L~Ls~n~l~~~~~~~~~------------------~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~  141 (208)
T 2o6s_A           81 LNLSTNQLQSLPNGVFD------------------KLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPD  141 (208)
T ss_dssp             EECCSSCCCCCCTTTTT------------------TCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             EECCCCcCCccCHhHhc------------------CccCCCEEEcCCCcCc-ccCHhHhccCCcCCEEECCCCccceeCH
Confidence            99999998865554443                  6789999999999996 4555468899999999999999997666


Q ss_pred             CCCCCCCCccEEEcCCCCCCC
Q 037699          171 PDWIPPFQLKELNLESCNLVG  191 (203)
Q Consensus       171 ~~l~~~~~L~~L~l~~n~l~~  191 (203)
                      ..+..+++|++|++++|.+.+
T Consensus       142 ~~~~~l~~L~~L~l~~N~~~~  162 (208)
T 2o6s_A          142 GVFDRLTSLQYIWLHDNPWDC  162 (208)
T ss_dssp             TTTTTCTTCCEEECCSCCBCC
T ss_pred             HHhccCCCccEEEecCCCeec
Confidence            668889999999999999854

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.81  E-value=1.5e-19  Score=142.06  Aligned_cols=185  Identities=18%  Similarity=0.201  Sum_probs=140.8

Q ss_pred             CcccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCccccccccccccc----------------ccCCCCCCC
Q 037699            2 PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSS----------------SVGNLTSIQ   65 (203)
Q Consensus         2 p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~----------------~l~~~~~L~   65 (203)
                      |..+..+++|+.|++++|.+++..+  +..+++|++|++++|.     +.+..+.                ....+++|+
T Consensus        51 ~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-----l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~  123 (487)
T 3oja_A           51 AADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-----VQELLVGPSIETLHAANNNISRVSCSRGQGKK  123 (487)
T ss_dssp             GGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-----EEEEEECTTCCEEECCSSCCCCEEECCCSSCE
T ss_pred             HHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-----CCCCCCCCCcCEEECcCCcCCCCCccccCCCC
Confidence            3467777899999999999885544  7888889999888885     3221110                012356788


Q ss_pred             EEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhhh-hccccccCCccccccc--------c-ccCCCCCEEEc
Q 037699           66 TLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILN-IFSTCILDGLEVLEMT--------E-WQLSSLDSVNL  135 (203)
Q Consensus        66 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~~~~~~l~~l~~~--------~-~~~~~L~~L~l  135 (203)
                      +|++++|.+++..|..++.+++|++|++++|.+.+..+..+. .     +.+++.+.+.        . ..+++|+.|++
T Consensus       124 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~-----l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L  198 (487)
T 3oja_A          124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS-----SDTLEHLNLQYNFIYDVKGQVVFAKLKTLDL  198 (487)
T ss_dssp             EEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGG-----TTTCCEEECTTSCCCEEECCCCCTTCCEEEC
T ss_pred             EEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhh-----CCcccEEecCCCccccccccccCCCCCEEEC
Confidence            999999999877788899999999999999999886655432 1     2333333322        1 25789999999


Q ss_pred             cCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhcc
Q 037699          136 SNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQ  201 (203)
Q Consensus       136 ~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~  201 (203)
                      ++|.+++ .+. .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+.++.+|.++..+
T Consensus       199 s~N~l~~-~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l  261 (487)
T 3oja_A          199 SSNKLAF-MGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN  261 (487)
T ss_dssp             CSSCCCE-ECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTC
T ss_pred             CCCCCCC-CCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhC
Confidence            9999974 555 47889999999999999995 677788899999999999999656777777654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.81  E-value=1.2e-19  Score=137.69  Aligned_cols=159  Identities=26%  Similarity=0.195  Sum_probs=88.5

Q ss_pred             cccEEecCCCccCCCCCcccc-CCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCc
Q 037699           10 HLVFLDLSLNNFQGPIPRGLG-NLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL   88 (203)
Q Consensus        10 ~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L   88 (203)
                      .++.|++++|.++...+..+. .+.+|++|++++|.     +....+..+..+++|++|++++|.++...+..|..+++|
T Consensus        40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-----i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  114 (361)
T 2xot_A           40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-----LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQAL  114 (361)
T ss_dssp             TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-----CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             CCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-----CCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCC
Confidence            456666666666644444454 56666666666664     555445556666666666666666654444455666666


Q ss_pred             cEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhh---ccCCCccEEEccCCcc
Q 037699           89 RSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHF---AKLSKLKYFDVSQNSL  165 (203)
Q Consensus        89 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l---~~~~~L~~L~l~~n~~  165 (203)
                      ++|++++|.+....+..+.                  .+++|+.|++++|.+. .++...+   ..+++|+.|++++|.+
T Consensus       115 ~~L~L~~N~i~~~~~~~~~------------------~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A          115 EVLLLYNNHIVVVDRNAFE------------------DMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             CEEECCSSCCCEECTTTTT------------------TCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCC
T ss_pred             CEEECCCCcccEECHHHhC------------------CcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCC
Confidence            6666666666544443333                  4566666666666664 3443333   3466666666666666


Q ss_pred             ccccCCCCCCCCC--ccEEEcCCCCCCCC
Q 037699          166 TLNVSPDWIPPFQ--LKELNLESCNLVGN  192 (203)
Q Consensus       166 ~~~~~~~l~~~~~--L~~L~l~~n~l~~~  192 (203)
                      +...+..+..++.  ++.|++.+|.+.++
T Consensus       176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          176 KKLPLTDLQKLPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             CCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred             CccCHHHhhhccHhhcceEEecCCCccCC
Confidence            6433233334443  35666666666443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.81  E-value=7e-19  Score=131.94  Aligned_cols=186  Identities=20%  Similarity=0.182  Sum_probs=124.2

Q ss_pred             CcccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCc--cch
Q 037699            2 PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEG--KIA   79 (203)
Q Consensus         2 p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~   79 (203)
                      |..+..+++|+.|++++|.++ .+|..+.  ++|++|++++|.     +....+..+..+++|++|++++|.++.  ..+
T Consensus        95 ~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~-----i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  166 (332)
T 2ft3_A           95 EKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNR-----IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP  166 (332)
T ss_dssp             GGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSC-----CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCT
T ss_pred             HhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCc-----cCccCHhHhCCCccCCEEECCCCccccCCCCc
Confidence            455666778888888888887 4554443  678888888886     555555567778888888888877752  334


Q ss_pred             hhhhcc--------------------CCccEEEccCCcCCcchhhhhhhccccccCCccccccc--------c---ccCC
Q 037699           80 TSFGRL--------------------CKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMT--------E---WQLS  128 (203)
Q Consensus        80 ~~~~~l--------------------~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~--------~---~~~~  128 (203)
                      ..+..+                    ++|++|++++|.+....+..+..     +..++.+.+.        .   ..++
T Consensus       167 ~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~-----l~~L~~L~L~~N~l~~~~~~~~~~l~  241 (332)
T 2ft3_A          167 GAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLR-----YSKLYRLGLGHNQIRMIENGSLSFLP  241 (332)
T ss_dssp             TSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTT-----CTTCSCCBCCSSCCCCCCTTGGGGCT
T ss_pred             ccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcC-----CCCCCEEECCCCcCCcCChhHhhCCC
Confidence            444443                    34555555555554443332221     2233333322        1   2678


Q ss_pred             CCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCC------CCCccEEEcCCCCCCC-CCCchhhhcc
Q 037699          129 SLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIP------PFQLKELNLESCNLVG-NRFPSWLLSQ  201 (203)
Q Consensus       129 ~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~------~~~L~~L~l~~n~l~~-~~~p~~~~~~  201 (203)
                      +|+.|++++|.+. .++. .+..+++|+.|++++|.++...+..+..      .++|+.|++.+|.+.. +..|..+..+
T Consensus       242 ~L~~L~L~~N~l~-~lp~-~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l  319 (332)
T 2ft3_A          242 TLRELHLDNNKLS-RVPA-GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV  319 (332)
T ss_dssp             TCCEEECCSSCCC-BCCT-TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTB
T ss_pred             CCCEEECCCCcCe-ecCh-hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccccc
Confidence            9999999999996 6666 5889999999999999999765555544      3579999999999842 3445555544


Q ss_pred             c
Q 037699          202 K  202 (203)
Q Consensus       202 ~  202 (203)
                      +
T Consensus       320 ~  320 (332)
T 2ft3_A          320 T  320 (332)
T ss_dssp             C
T ss_pred             c
Confidence            3

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.81  E-value=1.2e-19  Score=134.95  Aligned_cols=179  Identities=18%  Similarity=0.100  Sum_probs=125.4

Q ss_pred             CcccEEecCCCccCCCCCccc--cCCCCccEEeCCCCcccccccccccc----cccCCCCCCCEEEccccccCccchhhh
Q 037699            9 DHLVFLDLSLNNFQGPIPRGL--GNLTSLRYLDLSANISILQYLSGTFS----SSVGNLTSIQTLDLSFNNLEGKIATSF   82 (203)
Q Consensus         9 ~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~~   82 (203)
                      ++|+.|++++|.+.+..|..+  ..+++|++|++++|.     +....+    ..+..+++|++|++++|.+++..+..+
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-----i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~  165 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS-----WATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQV  165 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC-----CSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSC
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc-----ccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHh
Confidence            368999999999988888777  889999999999986     554333    334568889999999999987777788


Q ss_pred             hccCCccEEEccCCcCCcchhhhhhhccccccCCcccccccc--------------ccCCCCCEEEccCCccccccchhh
Q 037699           83 GRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTE--------------WQLSSLDSVNLSNNTLFGSLFEIH  148 (203)
Q Consensus        83 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~--------------~~~~~L~~L~l~~n~l~~~~~~~~  148 (203)
                      ..+++|++|++++|.+.+........ ....+++++.+.+..              ..+++|+.|++++|.+.+..|. .
T Consensus       166 ~~l~~L~~L~Ls~N~l~~~~~~~~~~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~-~  243 (310)
T 4glp_A          166 RAFPALTSLDLSDNPGLGERGLMAAL-CPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP-S  243 (310)
T ss_dssp             CCCTTCCEEECCSCTTCHHHHHHTTS-CTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS-C
T ss_pred             ccCCCCCEEECCCCCCccchhhhHHH-hhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchh-h
Confidence            88999999999999875421100000 000122333333221              1458899999999999765454 3


Q ss_pred             hccC---CCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchh
Q 037699          149 FAKL---SKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSW  197 (203)
Q Consensus       149 l~~~---~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~  197 (203)
                      +..+   ++|+.|++++|.++ .+|..+.  ++|++|++++|.+++-..+..
T Consensus       244 ~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~  292 (310)
T 4glp_A          244 APRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQPDE  292 (310)
T ss_dssp             CSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCCTTS
T ss_pred             HHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCchhhh
Confidence            4444   68999999999998 5666553  689999999999954333333

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.80  E-value=2.3e-19  Score=133.33  Aligned_cols=175  Identities=17%  Similarity=0.102  Sum_probs=113.9

Q ss_pred             ccCCcccEEecCCCccCCCCC----ccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCcc--ch
Q 037699            6 GLSDHLVFLDLSLNNFQGPIP----RGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGK--IA   79 (203)
Q Consensus         6 ~~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~   79 (203)
                      ...++|++|++++|.+++..+    ..+..+++|++|++++|.     +....+..+..+++|++|++++|.+.+.  .+
T Consensus       114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  188 (310)
T 4glp_A          114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-----SPAFSCEQVRAFPALTSLDLSDNPGLGERGLM  188 (310)
T ss_dssp             CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-----SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHH
T ss_pred             ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-----cchhhHHHhccCCCCCEEECCCCCCccchhhh
Confidence            455677888888887775433    233457778888888776     6666667777777888888888776532  21


Q ss_pred             --hhhhccCCccEEEccCCcCCcchhh---hhh---hccccccCCcccccc-cc--cc---CCCCCEEEccCCccccccc
Q 037699           80 --TSFGRLCKLRSVFLSHSNMNQEISK---ILN---IFSTCILDGLEVLEM-TE--WQ---LSSLDSVNLSNNTLFGSLF  145 (203)
Q Consensus        80 --~~~~~l~~L~~L~l~~n~~~~~~~~---~~~---~~~~~~~~~l~~l~~-~~--~~---~~~L~~L~l~~n~l~~~~~  145 (203)
                        ..+..+++|++|++++|.+......   .+.   .+....+.+...... |.  ..   +++|+.|++++|.++ .++
T Consensus       189 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp  267 (310)
T 4glp_A          189 AALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVP  267 (310)
T ss_dssp             TTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCC
T ss_pred             HHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chh
Confidence              2235677777778877777533221   111   111111222111111 11  12   369999999999996 666


Q ss_pred             hhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCC
Q 037699          146 EIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVG  191 (203)
Q Consensus       146 ~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~  191 (203)
                      . .+  .++|+.|++++|++++. + .+..+++|++|++++|++++
T Consensus       268 ~-~~--~~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          268 K-GL--PAKLRVLDLSSNRLNRA-P-QPDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             S-CC--CSCCSCEECCSCCCCSC-C-CTTSCCCCSCEECSSTTTSC
T ss_pred             h-hh--cCCCCEEECCCCcCCCC-c-hhhhCCCccEEECcCCCCCC
Confidence            5 23  37999999999999963 2 36778999999999999944

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.80  E-value=2.7e-19  Score=144.40  Aligned_cols=159  Identities=21%  Similarity=0.207  Sum_probs=107.8

Q ss_pred             CCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCC
Q 037699            8 SDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCK   87 (203)
Q Consensus         8 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~   87 (203)
                      ..+++.|++++|.++...+..|.++++|++|++++|.     +....+..|.++++|++|++++|.++...+..|..+++
T Consensus        51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~-----i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~  125 (635)
T 4g8a_A           51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-----IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS  125 (635)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-----CCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred             CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc-----CCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence            3467888888888876666777888888888888886     66666667778888888888888877544556777888


Q ss_pred             ccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCcccc
Q 037699           88 LRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTL  167 (203)
Q Consensus        88 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~  167 (203)
                      |++|++++|.+....+..+.                  .+++|+.|++++|.+........+..+++|+.|++++|.+++
T Consensus       126 L~~L~Ls~N~l~~l~~~~~~------------------~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~  187 (635)
T 4g8a_A          126 LQKLVAVETNLASLENFPIG------------------HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  187 (635)
T ss_dssp             CCEEECTTSCCCCSTTCCCT------------------TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             CCEEECCCCcCCCCChhhhh------------------cCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence            88888888877654443333                  567777777777777532222256677777778877777765


Q ss_pred             ccCCCCCCCCC----ccEEEcCCCCC
Q 037699          168 NVSPDWIPPFQ----LKELNLESCNL  189 (203)
Q Consensus       168 ~~~~~l~~~~~----L~~L~l~~n~l  189 (203)
                      ..+..+..+.+    ...++++.|.+
T Consensus       188 ~~~~~l~~L~~l~~~~~~~~ls~n~l  213 (635)
T 4g8a_A          188 IYCTDLRVLHQMPLLNLSLDLSLNPM  213 (635)
T ss_dssp             ECGGGGHHHHTCTTCCCEEECTTCCC
T ss_pred             cccccccchhhhhhhhhhhhcccCcc
Confidence            44444433222    23566666665

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.80  E-value=2e-19  Score=143.74  Aligned_cols=180  Identities=24%  Similarity=0.189  Sum_probs=121.9

Q ss_pred             cCCcccEEecCCCccCCCC--CccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccch-hhhh
Q 037699            7 LSDHLVFLDLSLNNFQGPI--PRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIA-TSFG   83 (203)
Q Consensus         7 ~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~   83 (203)
                      .+++|+.|++++|.+++..  +..+..+++|++|++++|.     +....+. +..+++|++|++++|.+.+..+ ..+.
T Consensus       345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-----l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~  418 (570)
T 2z63_A          345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-----VITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFL  418 (570)
T ss_dssp             BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-----EEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTT
T ss_pred             cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCc-----ccccccc-ccccCCCCEEEccCCccccccchhhhh
Confidence            4557888888888776432  5566677777777777774     4443333 6677777777777777764443 3566


Q ss_pred             ccCCccEEEccCCcCCcchhhhhhhc---cccccCCcccc--cccc--ccCCCCCEEEccCCccccccchhhhccCCCcc
Q 037699           84 RLCKLRSVFLSHSNMNQEISKILNIF---STCILDGLEVL--EMTE--WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLK  156 (203)
Q Consensus        84 ~l~~L~~L~l~~n~~~~~~~~~~~~~---~~~~~~~l~~l--~~~~--~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~  156 (203)
                      .+++|++|++++|.+....+..+..+   ....+.+....  .++.  ..+++|+.|++++|.+++..+. .+..+++|+
T Consensus       419 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~  497 (570)
T 2z63_A          419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT-AFNSLSSLQ  497 (570)
T ss_dssp             TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT-TTTTCTTCC
T ss_pred             cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChh-hhhcccCCC
Confidence            77777777777776665544433221   11111111111  1111  1678999999999999754454 788899999


Q ss_pred             EEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCC
Q 037699          157 YFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNR  193 (203)
Q Consensus       157 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~  193 (203)
                      .|++++|.+++..+..+..+++|++|++++|+++++.
T Consensus       498 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  534 (570)
T 2z63_A          498 VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  534 (570)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             EEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCC
Confidence            9999999999777777888999999999999996653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.80  E-value=9.2e-19  Score=138.63  Aligned_cols=174  Identities=21%  Similarity=0.227  Sum_probs=114.1

Q ss_pred             cccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCc--cchhhhhccCC
Q 037699           10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEG--KIATSFGRLCK   87 (203)
Q Consensus        10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~   87 (203)
                      +++.|++++|.+....  ....+++|++|++++|.     +.+..|..+..+++|++|++++|.+++  .+|..+..+++
T Consensus       303 ~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~  375 (520)
T 2z7x_B          303 NIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNL-----LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS  375 (520)
T ss_dssp             CCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSC-----CCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTT
T ss_pred             ceeEEEcCCCcccccc--chhhCCcccEEEeECCc-----cChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCC
Confidence            5666777776655321  12456667777777765     555566666666677777777776664  44455666677


Q ss_pred             ccEEEccCCcCCcchhh-hhhhccccccCCccccccccc--------cC-CCCCEEEccCCccccccchhhhccCCCccE
Q 037699           88 LRSVFLSHSNMNQEISK-ILNIFSTCILDGLEVLEMTEW--------QL-SSLDSVNLSNNTLFGSLFEIHFAKLSKLKY  157 (203)
Q Consensus        88 L~~L~l~~n~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~--------~~-~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~  157 (203)
                      |++|++++|.+.+..+. .+..     +..++.+.+...        .+ ++|+.|++++|.+. .++. .+..+++|+.
T Consensus       376 L~~L~Ls~N~l~~~l~~~~~~~-----l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~-~~~~l~~L~~  448 (520)
T 2z7x_B          376 LQQLDISQNSVSYDEKKGDCSW-----TKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPK-QVVKLEALQE  448 (520)
T ss_dssp             CCEEECCSSCCBCCGGGCSCCC-----CTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCG-GGGGCTTCCE
T ss_pred             CCEEECCCCcCCcccccchhcc-----CccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccch-hhhcCCCCCE
Confidence            77777777666652222 1211     222333322211        12 68999999999996 6776 4559999999


Q ss_pred             EEccCCccccccCCC-CCCCCCccEEEcCCCCCCCCCCchhh
Q 037699          158 FDVSQNSLTLNVSPD-WIPPFQLKELNLESCNLVGNRFPSWL  198 (203)
Q Consensus       158 L~l~~n~~~~~~~~~-l~~~~~L~~L~l~~n~l~~~~~p~~~  198 (203)
                      |++++|.++. ++.. +..+++|++|++++|+++++.-..|+
T Consensus       449 L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~  489 (520)
T 2z7x_B          449 LNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY  489 (520)
T ss_dssp             EECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred             EECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCCchHH
Confidence            9999999994 5554 88899999999999999776543444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.80  E-value=3.8e-18  Score=126.71  Aligned_cols=159  Identities=25%  Similarity=0.332  Sum_probs=74.5

Q ss_pred             CCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCC
Q 037699            8 SDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCK   87 (203)
Q Consensus         8 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~   87 (203)
                      +++|+.|++++|.+++ .+. +..+++|++|++++|.     +...  ..+..+++|++|++++|.+++ ++. +..+++
T Consensus        62 l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~-----l~~~--~~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~  130 (308)
T 1h6u_A           62 LNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNP-----LKNV--SAIAGLQSIKTLDLTSTQITD-VTP-LAGLSN  130 (308)
T ss_dssp             CTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCC-----CSCC--GGGTTCTTCCEEECTTSCCCC-CGG-GTTCTT
T ss_pred             cCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCc-----CCCc--hhhcCCCCCCEEECCCCCCCC-chh-hcCCCC
Confidence            3455555555555552 222 5555555555555553     2221  234555555555555555552 222 555555


Q ss_pred             ccEEEccCCcCCcchhhhhhhccccccCCcccccc--------c-cccCCCCCEEEccCCccccccchhhhccCCCccEE
Q 037699           88 LRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEM--------T-EWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYF  158 (203)
Q Consensus        88 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~--------~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L  158 (203)
                      |++|++++|.+....+  +..     +..++.+.+        + ...+++|+.|++++|.+.+ .+.  +..+++|+.|
T Consensus       131 L~~L~l~~n~l~~~~~--l~~-----l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L  200 (308)
T 1h6u_A          131 LQVLYLDLNQITNISP--LAG-----LTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD-ISP--LASLPNLIEV  200 (308)
T ss_dssp             CCEEECCSSCCCCCGG--GGG-----CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CGG--GGGCTTCCEE
T ss_pred             CCEEECCCCccCcCcc--ccC-----CCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCc-Chh--hcCCCCCCEE
Confidence            6666665555544322  110     111211111        1 1134455555555555532 221  4455555555


Q ss_pred             EccCCccccccCCCCCCCCCccEEEcCCCCC
Q 037699          159 DVSQNSLTLNVSPDWIPPFQLKELNLESCNL  189 (203)
Q Consensus       159 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l  189 (203)
                      ++++|.+++..  .+..+++|+.|++++|.+
T Consensus       201 ~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          201 HLKNNQISDVS--PLANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             ECTTSCCCBCG--GGTTCTTCCEEEEEEEEE
T ss_pred             EccCCccCccc--cccCCCCCCEEEccCCee
Confidence            55555555322  144555555555555555

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.79  E-value=3.1e-18  Score=139.61  Aligned_cols=182  Identities=24%  Similarity=0.215  Sum_probs=109.4

Q ss_pred             CcccccCCcccEEecCCCccCCCCC-ccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccC--ccc
Q 037699            2 PWVFGLSDHLVFLDLSLNNFQGPIP-RGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLE--GKI   78 (203)
Q Consensus         2 p~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~   78 (203)
                      |..+..+++|+.|++++|.+.+.++ ..+..+++|++|++++|.     +....+..+..+++|+.|++++|.+.  +..
T Consensus       398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-----l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  472 (680)
T 1ziw_A          398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-----YLQLTRNSFALVPSLQRLMLRRVALKNVDSS  472 (680)
T ss_dssp             TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-----EEECCTTTTTTCTTCCEEECTTSCCBCTTCS
T ss_pred             hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-----cceeChhhhhcCcccccchhccccccccccC
Confidence            4456667788888888888875544 677788888888888886     55555555556666666666666554  344


Q ss_pred             hhhhhccCCccEEEccCCcCCcchhhhhhhc---cccccCCcccccc--------c---cccCCCCCEEEccCCcccccc
Q 037699           79 ATSFGRLCKLRSVFLSHSNMNQEISKILNIF---STCILDGLEVLEM--------T---EWQLSSLDSVNLSNNTLFGSL  144 (203)
Q Consensus        79 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~---~~~~~~~l~~l~~--------~---~~~~~~L~~L~l~~n~l~~~~  144 (203)
                      |..+..+++|++|++++|.+....+..+..+   ....+.+.....+        +   ...+++|+.|++++|.+. .+
T Consensus       473 p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i  551 (680)
T 1ziw_A          473 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EI  551 (680)
T ss_dssp             SCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CC
T ss_pred             CcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CC
Confidence            5555666666666666666554443332211   1111111111000        0   114567777777777774 55


Q ss_pred             chhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCC
Q 037699          145 FEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNL  189 (203)
Q Consensus       145 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l  189 (203)
                      +...+..+++|+.|++++|.++...+..+..+++|+.|++++|.+
T Consensus       552 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l  596 (680)
T 1ziw_A          552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI  596 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             CHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcC
Confidence            544566777777777777777754444556667777777777776

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.79  E-value=6.4e-19  Score=140.83  Aligned_cols=158  Identities=22%  Similarity=0.241  Sum_probs=107.0

Q ss_pred             CCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCC
Q 037699            8 SDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCK   87 (203)
Q Consensus         8 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~   87 (203)
                      .++++.|++++|.+++..+..+..+++|++|++++|.     +.+..+..+..+++|++|++++|.++...+..|..+++
T Consensus        27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-----i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  101 (570)
T 2z63_A           27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-----IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS  101 (570)
T ss_dssp             CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC-----CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred             cccccEEEccCCccCccChhHhhCCCCceEEECCCCc-----CCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence            3578999999999987777788999999999999996     77777778889999999999999998666678899999


Q ss_pred             ccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCcccc-ccchhhhccCCCccEEEccCCccc
Q 037699           88 LRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFG-SLFEIHFAKLSKLKYFDVSQNSLT  166 (203)
Q Consensus        88 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~-~~~~~~l~~~~~L~~L~l~~n~~~  166 (203)
                      |++|++++|.+....+..+.                  .+++|++|++++|.+.+ ..|. .++.+++|+.|++++|.++
T Consensus       102 L~~L~L~~n~l~~l~~~~~~------------------~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~l~~n~l~  162 (570)
T 2z63_A          102 LQKLVAVETNLASLENFPIG------------------HLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQ  162 (570)
T ss_dssp             CCEEECTTSCCCCSTTCSCT------------------TCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECTTSCCC
T ss_pred             cccccccccccccCCCcccc------------------ccccccEEecCCCccceecChh-hhcccCCCCEEeCcCCccc
Confidence            99999999988764432222                  34455555555555432 1222 3445555555555555554


Q ss_pred             cccCCCCCCCCCc----cEEEcCCCCC
Q 037699          167 LNVSPDWIPPFQL----KELNLESCNL  189 (203)
Q Consensus       167 ~~~~~~l~~~~~L----~~L~l~~n~l  189 (203)
                      +..+..+..+.+|    +.+++++|.+
T Consensus       163 ~~~~~~~~~l~~L~~~~~~L~l~~n~l  189 (570)
T 2z63_A          163 SIYCTDLRVLHQMPLLNLSLDLSLNPM  189 (570)
T ss_dssp             EECGGGGHHHHTCTTCCCEEECTTCCC
T ss_pred             eecHHHccchhccchhhhhcccCCCCc
Confidence            3333333333333    4444444444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.79  E-value=6.7e-19  Score=126.18  Aligned_cols=153  Identities=23%  Similarity=0.234  Sum_probs=113.4

Q ss_pred             cCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccc-cCccchhhhhccCCccEEEccC-CcC
Q 037699           21 FQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNN-LEGKIATSFGRLCKLRSVFLSH-SNM   98 (203)
Q Consensus        21 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-n~~   98 (203)
                      ++ .+|. +  ..++++|++++|.     +....+..+..+++|++|++++|. ++...+..|..+++|++|++++ |.+
T Consensus        23 l~-~ip~-~--~~~l~~L~l~~n~-----l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l   93 (239)
T 2xwt_C           23 IQ-RIPS-L--PPSTQTLKLIETH-----LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL   93 (239)
T ss_dssp             CS-SCCC-C--CTTCCEEEEESCC-----CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC
T ss_pred             cc-ccCC-C--CCcccEEEEeCCc-----ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe
Confidence            44 4555 3  3489999999997     777777789999999999999997 8755556789999999999998 888


Q ss_pred             CcchhhhhhhccccccCCcccccc--------cc-ccCCCCC---EEEccCC-ccccccchhhhccCCCcc-EEEccCCc
Q 037699           99 NQEISKILNIFSTCILDGLEVLEM--------TE-WQLSSLD---SVNLSNN-TLFGSLFEIHFAKLSKLK-YFDVSQNS  164 (203)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~l~~l~~--------~~-~~~~~L~---~L~l~~n-~l~~~~~~~~l~~~~~L~-~L~l~~n~  164 (203)
                      ....+..+..     +.+++.+.+        +. ..+++|+   .|++++| .+. .++...+..+++|+ .|++++|.
T Consensus        94 ~~i~~~~f~~-----l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~l~~L~~~L~l~~n~  167 (239)
T 2xwt_C           94 TYIDPDALKE-----LPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMT-SIPVNAFQGLCNETLTLKLYNNG  167 (239)
T ss_dssp             CEECTTSEEC-----CTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCC-EECTTTTTTTBSSEEEEECCSCC
T ss_pred             eEcCHHHhCC-----CCCCCEEeCCCCCCccccccccccccccccEEECCCCcchh-hcCcccccchhcceeEEEcCCCC
Confidence            8765554432     233333332        22 2455666   9999999 775 55555688899999 99999999


Q ss_pred             cccccCCCCCCCCCccEEEcCCCC-C
Q 037699          165 LTLNVSPDWIPPFQLKELNLESCN-L  189 (203)
Q Consensus       165 ~~~~~~~~l~~~~~L~~L~l~~n~-l  189 (203)
                      ++ .++......++|++|++++|+ +
T Consensus       168 l~-~i~~~~~~~~~L~~L~L~~n~~l  192 (239)
T 2xwt_C          168 FT-SVQGYAFNGTKLDAVYLNKNKYL  192 (239)
T ss_dssp             CC-EECTTTTTTCEEEEEECTTCTTC
T ss_pred             Cc-ccCHhhcCCCCCCEEEcCCCCCc
Confidence            88 444443334789999999995 7

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.79  E-value=1.9e-18  Score=136.79  Aligned_cols=181  Identities=19%  Similarity=0.274  Sum_probs=126.0

Q ss_pred             CcccEEecCCCccCCCCCccc-----cCCCCccEEeCCCCcccccccccccc-------------------------cc-
Q 037699            9 DHLVFLDLSLNNFQGPIPRGL-----GNLTSLRYLDLSANISILQYLSGTFS-------------------------SS-   57 (203)
Q Consensus         9 ~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~~~~~~~~-------------------------~~-   57 (203)
                      ++|+.|++++|.+++.+|..+     ..+.+|+.+++++|.     +  .+|                         .. 
T Consensus       247 ~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~-----~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~  319 (520)
T 2z7x_B          247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV-----F--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC  319 (520)
T ss_dssp             SSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECC-----C--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC
T ss_pred             CcccEEEeecccccCccccchhhcccccCceeEeccccccc-----e--ecchhhhhcccccCceeEEEcCCCccccccc
Confidence            378889999998887788777     777777777777664     2  112                         00 


Q ss_pred             cCCCCCCCEEEccccccCccchhhhhccCCccEEEccCCcCCcc--hhhhhhhc---cccccCCccccc-ccc---ccCC
Q 037699           58 VGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQE--ISKILNIF---STCILDGLEVLE-MTE---WQLS  128 (203)
Q Consensus        58 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~---~~~~~~~l~~l~-~~~---~~~~  128 (203)
                      ...+++|++|++++|.+++..|..+..+++|++|++++|.+.+.  .+..+..+   ....+.+..... ++.   ..++
T Consensus       320 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~  399 (520)
T 2z7x_B          320 PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK  399 (520)
T ss_dssp             CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred             hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence            15788999999999999988899999999999999999999863  33333321   111122222211 221   1457


Q ss_pred             CCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchh-hhccc
Q 037699          129 SLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSW-LLSQK  202 (203)
Q Consensus       129 ~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~-~~~~~  202 (203)
                      +|+.|++++|.+++..+. .+  .++|+.|++++|.++ .+|..+..+++|++|++++|.+  ..+|.. +..++
T Consensus       400 ~L~~L~Ls~N~l~~~~~~-~l--~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l--~~l~~~~~~~l~  468 (520)
T 2z7x_B          400 SLLSLNMSSNILTDTIFR-CL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL--KSVPDGIFDRLT  468 (520)
T ss_dssp             TCCEEECCSSCCCGGGGG-SC--CTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCC--CCCCTTTTTTCT
T ss_pred             cCCEEECcCCCCCcchhh-hh--cccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcC--CccCHHHhccCC
Confidence            788888888888654443 22  168888888888888 5666666888899999999988  357765 54443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.78  E-value=3.9e-18  Score=120.70  Aligned_cols=135  Identities=21%  Similarity=0.284  Sum_probs=118.2

Q ss_pred             CcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCc
Q 037699            9 DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL   88 (203)
Q Consensus         9 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L   88 (203)
                      ++++.|++++|.++...+..+..+++|++|++++|.     +....|..+..+++|++|++++|.++...+..|..+++|
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-----i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L  106 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-----ISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSL  106 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC-----CCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-----CCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCC
Confidence            589999999999997777789999999999999997     778888999999999999999999995555567899999


Q ss_pred             cEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCcccc
Q 037699           89 RSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTL  167 (203)
Q Consensus        89 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~  167 (203)
                      ++|++++|.+....+..+.                  .+++|+.|++++|.+. ..+...+..+++|+.|++++|.+..
T Consensus       107 ~~L~L~~N~l~~~~~~~~~------------------~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          107 QLLLLNANKINCLRVDAFQ------------------DLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CEEECCSSCCCCCCTTTTT------------------TCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CEEECCCCCCCEeCHHHcC------------------CCCCCCEEECCCCcCC-EECHHHHhCCCCCCEEEeCCCCcCC
Confidence            9999999999877665554                  6789999999999996 4454478889999999999999864

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=1.4e-17  Score=122.74  Aligned_cols=159  Identities=24%  Similarity=0.267  Sum_probs=95.7

Q ss_pred             CCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCC
Q 037699            8 SDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCK   87 (203)
Q Consensus         8 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~   87 (203)
                      +++|+.|++++|.+.. ++ .+..+++|++|++++|.     +.+..+  +..+++|++|++++|.+++ + ..+..+++
T Consensus        45 l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~-----l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~  113 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNK-----LTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKK  113 (291)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSC-----CCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTT
T ss_pred             cCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCc-----cCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCC
Confidence            3467788888887763 33 46777888888888875     444333  6777788888888887763 3 33777778


Q ss_pred             ccEEEccCCcCCcchhhhhhhccccccCCccccccc--------c-ccCCCCCEEEccCCccccccchhhhccCCCccEE
Q 037699           88 LRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMT--------E-WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYF  158 (203)
Q Consensus        88 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~--------~-~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L  158 (203)
                      |++|++++|.+... + .+..     +..++.+.+.        . ..+++|+.|++++|.+.+ .+.  +..+++|+.|
T Consensus       114 L~~L~L~~n~i~~~-~-~l~~-----l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~-~~~--l~~l~~L~~L  183 (291)
T 1h6t_A          114 LKSLSLEHNGISDI-N-GLVH-----LPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD-IVP--LAGLTKLQNL  183 (291)
T ss_dssp             CCEEECTTSCCCCC-G-GGGG-----CTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC-CGG--GTTCTTCCEE
T ss_pred             CCEEECCCCcCCCC-h-hhcC-----CCCCCEEEccCCcCCcchhhccCCCCCEEEccCCcccc-chh--hcCCCccCEE
Confidence            88888888777653 1 1110     1111111111        1 145666666666666643 222  5566666666


Q ss_pred             EccCCccccccCCCCCCCCCccEEEcCCCCC
Q 037699          159 DVSQNSLTLNVSPDWIPPFQLKELNLESCNL  189 (203)
Q Consensus       159 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l  189 (203)
                      ++++|.++..  +.+..+++|+.|++++|++
T Consensus       184 ~L~~N~i~~l--~~l~~l~~L~~L~l~~n~i  212 (291)
T 1h6t_A          184 YLSKNHISDL--RALAGLKNLDVLELFSQEC  212 (291)
T ss_dssp             ECCSSCCCBC--GGGTTCTTCSEEEEEEEEE
T ss_pred             ECCCCcCCCC--hhhccCCCCCEEECcCCcc
Confidence            6666666542  2355666666666666666

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.78  E-value=3.7e-18  Score=136.43  Aligned_cols=152  Identities=20%  Similarity=0.257  Sum_probs=97.8

Q ss_pred             cCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCc--cchhhhhccCCccEEEccCCcCCcchh-hhh
Q 037699           30 GNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEG--KIATSFGRLCKLRSVFLSHSNMNQEIS-KIL  106 (203)
Q Consensus        30 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~  106 (203)
                      ..+++|++|++++|.     +.+..|..+..+++|++|++++|.+++  ..|..+..+++|++|++++|.+....+ ..+
T Consensus       350 ~~l~~L~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~  424 (562)
T 3a79_B          350 PSPSSFTFLNFTQNV-----FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC  424 (562)
T ss_dssp             SSCCCCCEEECCSSC-----CCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC
T ss_pred             cCCCCceEEECCCCc-----cccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh
Confidence            456667777777765     555566666667777777777776663  334556666777777777776654222 111


Q ss_pred             hhccccccCCccccccccc--------cC-CCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCC-CCCC
Q 037699          107 NIFSTCILDGLEVLEMTEW--------QL-SSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPD-WIPP  176 (203)
Q Consensus       107 ~~~~~~~~~~l~~l~~~~~--------~~-~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~-l~~~  176 (203)
                      ..     +..++.+.+...        .+ ++|+.|++++|.+. .++.. +..+++|+.|++++|+++ .++.. +..+
T Consensus       425 ~~-----l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~-~~~l~~L~~L~L~~N~l~-~l~~~~~~~l  496 (562)
T 3a79_B          425 AW-----AESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKD-VTHLQALQELNVASNQLK-SVPDGVFDRL  496 (562)
T ss_dssp             CC-----CTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTT-TTSSCCCSEEECCSSCCC-CCCTTSTTTC
T ss_pred             cC-----cccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChh-hcCCCCCCEEECCCCCCC-CCCHHHHhcC
Confidence            11     122232222211        22 58889999998885 66663 448888999999999888 45544 7788


Q ss_pred             CCccEEEcCCCCCCCCCC
Q 037699          177 FQLKELNLESCNLVGNRF  194 (203)
Q Consensus       177 ~~L~~L~l~~n~l~~~~~  194 (203)
                      ++|+.|++++|++.++.-
T Consensus       497 ~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          497 TSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             TTCCCEECCSCCBCCCHH
T ss_pred             CCCCEEEecCCCcCCCcc
Confidence            889999999998866543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.78  E-value=4.5e-19  Score=133.04  Aligned_cols=168  Identities=17%  Similarity=0.206  Sum_probs=89.2

Q ss_pred             CcccEEecCCCccCCC-CCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEcccc-ccCc-cchhhhhcc
Q 037699            9 DHLVFLDLSLNNFQGP-IPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFN-NLEG-KIATSFGRL   85 (203)
Q Consensus         9 ~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~-~~~~~~~~l   85 (203)
                      ++|+.|++++|.+++. ++..+..+++|++|++++|.     +.+..+..+..+++|++|++++| .+++ .++..+..+
T Consensus        93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~-----l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~  167 (336)
T 2ast_B           93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-----LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC  167 (336)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-----CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred             CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc-----cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcC
Confidence            4666666666665533 45555666666666666664     55455555666666666666666 4543 245556666


Q ss_pred             CCccEEEccCC-cCCcc-hhhhhhhccccccC-Cccccccc------------c--ccCCCCCEEEccCCc-cccccchh
Q 037699           86 CKLRSVFLSHS-NMNQE-ISKILNIFSTCILD-GLEVLEMT------------E--WQLSSLDSVNLSNNT-LFGSLFEI  147 (203)
Q Consensus        86 ~~L~~L~l~~n-~~~~~-~~~~~~~~~~~~~~-~l~~l~~~------------~--~~~~~L~~L~l~~n~-l~~~~~~~  147 (203)
                      ++|++|++++| .+... .+..+..     ++ +++.+.+.            .  ..+++|+.|++++|. +++..+. 
T Consensus       168 ~~L~~L~l~~~~~l~~~~~~~~~~~-----l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~-  241 (336)
T 2ast_B          168 SRLDELNLSWCFDFTEKHVQVAVAH-----VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-  241 (336)
T ss_dssp             TTCCEEECCCCTTCCHHHHHHHHHH-----SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-
T ss_pred             CCCCEEcCCCCCCcChHHHHHHHHh-----cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-
Confidence            66666666666 55542 2222221     11 22222111            0  145566666666665 4333333 


Q ss_pred             hhccCCCccEEEccCCc-cccccCCCCCCCCCccEEEcCCC
Q 037699          148 HFAKLSKLKYFDVSQNS-LTLNVSPDWIPPFQLKELNLESC  187 (203)
Q Consensus       148 ~l~~~~~L~~L~l~~n~-~~~~~~~~l~~~~~L~~L~l~~n  187 (203)
                      .+..+++|+.|++++|. ++......+..+++|++|++++|
T Consensus       242 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          242 EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            45556666666666663 22222223455666666666666

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.78  E-value=7.5e-18  Score=127.73  Aligned_cols=156  Identities=25%  Similarity=0.245  Sum_probs=127.3

Q ss_pred             ccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccC-CCCCCCEEEccccccCccchhhhhccCCcc
Q 037699           11 LVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVG-NLTSIQTLDLSFNNLEGKIATSFGRLCKLR   89 (203)
Q Consensus        11 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~   89 (203)
                      -+.++++++.++ .+|..+.  ..++.|++++|.     +....+..+. .+++|++|++++|.++...+..|..+++|+
T Consensus        20 ~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~-----l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~   91 (361)
T 2xot_A           20 SNILSCSKQQLP-NVPQSLP--SYTALLDLSHNN-----LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR   91 (361)
T ss_dssp             TTEEECCSSCCS-SCCSSCC--TTCSEEECCSSC-----CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCCEEECCCCC-----CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCC
Confidence            467899999988 5666553  458999999997     7777777777 899999999999999966677899999999


Q ss_pred             EEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCcccccc
Q 037699           90 SVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNV  169 (203)
Q Consensus        90 ~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~  169 (203)
                      +|++++|.+....+..+.                  .+++|+.|++++|.+.+ .....+..+++|+.|++++|.++...
T Consensus        92 ~L~Ls~N~l~~~~~~~~~------------------~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~L~~N~l~~l~  152 (361)
T 2xot_A           92 YLDLSSNHLHTLDEFLFS------------------DLQALEVLLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQISRFP  152 (361)
T ss_dssp             EEECCSSCCCEECTTTTT------------------TCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred             EEECCCCcCCcCCHHHhC------------------CCcCCCEEECCCCcccE-ECHHHhCCcccCCEEECCCCcCCeeC
Confidence            999999999876555544                  67899999999999964 44447889999999999999999643


Q ss_pred             CCCC---CCCCCccEEEcCCCCCCCCCCc
Q 037699          170 SPDW---IPPFQLKELNLESCNLVGNRFP  195 (203)
Q Consensus       170 ~~~l---~~~~~L~~L~l~~n~l~~~~~p  195 (203)
                      ...+   ..+++|+.|+|++|.|  ..+|
T Consensus       153 ~~~~~~~~~l~~L~~L~L~~N~l--~~l~  179 (361)
T 2xot_A          153 VELIKDGNKLPKLMLLDLSSNKL--KKLP  179 (361)
T ss_dssp             GGGTC----CTTCCEEECCSSCC--CCCC
T ss_pred             HHHhcCcccCCcCCEEECCCCCC--CccC
Confidence            3334   5688999999999999  4455

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.77  E-value=2.7e-17  Score=122.14  Aligned_cols=169  Identities=23%  Similarity=0.278  Sum_probs=127.7

Q ss_pred             CCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCC
Q 037699            8 SDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCK   87 (203)
Q Consensus         8 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~   87 (203)
                      +++|+.|++++|.++. ++ .+..+++|++|++++|.     +....+  +..+++|++|++++|.+++ .+ .+..+++
T Consensus        40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~-----i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~  108 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQ-----ITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQS  108 (308)
T ss_dssp             HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSC-----CCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTT
T ss_pred             cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCc-----CCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCC
Confidence            4589999999999884 44 68889999999999996     555443  8899999999999999984 33 6889999


Q ss_pred             ccEEEccCCcCCcchhhhhhhccccccCCccccccc---------cccCCCCCEEEccCCccccccchhhhccCCCccEE
Q 037699           88 LRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMT---------EWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYF  158 (203)
Q Consensus        88 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L  158 (203)
                      |++|++++|.+....+  +..     +..++.+.+.         ...+++|+.|++++|.+.+ .+.  +..+++|+.|
T Consensus       109 L~~L~l~~n~l~~~~~--l~~-----l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L  178 (308)
T 1h6u_A          109 IKTLDLTSTQITDVTP--LAG-----LSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD-LTP--LANLSKLTTL  178 (308)
T ss_dssp             CCEEECTTSCCCCCGG--GTT-----CTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEE
T ss_pred             CCEEECCCCCCCCchh--hcC-----CCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCC-Chh--hcCCCCCCEE
Confidence            9999999999876432  211     3333333322         2267889999999998863 332  6788999999


Q ss_pred             EccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhccc
Q 037699          159 DVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQK  202 (203)
Q Consensus       159 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~~  202 (203)
                      ++++|.+++..+  +..+++|++|++++|.++  .++. +..++
T Consensus       179 ~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~--~~~~-l~~l~  217 (308)
T 1h6u_A          179 KADDNKISDISP--LASLPNLIEVHLKNNQIS--DVSP-LANTS  217 (308)
T ss_dssp             ECCSSCCCCCGG--GGGCTTCCEEECTTSCCC--BCGG-GTTCT
T ss_pred             ECCCCccCcChh--hcCCCCCCEEEccCCccC--cccc-ccCCC
Confidence            999999885433  777889999999999983  3443 44443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.77  E-value=1.2e-17  Score=118.25  Aligned_cols=135  Identities=19%  Similarity=0.202  Sum_probs=117.0

Q ss_pred             CcccEEecCCCccCCCCC-ccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCC
Q 037699            9 DHLVFLDLSLNNFQGPIP-RGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCK   87 (203)
Q Consensus         9 ~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~   87 (203)
                      +.++.|++++|.+++..+ ..+..+++|++|++++|.     +....+..+..+++|++|++++|.+++..+..+..+++
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-----i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  106 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-----ITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLES  106 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-----CCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSS
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-----CCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcC
Confidence            467899999999996644 568899999999999997     77777778999999999999999999777778999999


Q ss_pred             ccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCcccc
Q 037699           88 LRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTL  167 (203)
Q Consensus        88 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~  167 (203)
                      |++|++++|.+....+..+.                  .+++|+.|++++|.+.+..+. .+..+++|+.|++++|.++.
T Consensus       107 L~~L~Ls~N~l~~~~~~~~~------------------~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          107 LKTLMLRSNRITCVGNDSFI------------------GLSSVRLLSLYDNQITTVAPG-AFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             CCEEECTTSCCCCBCTTSST------------------TCTTCSEEECTTSCCCCBCTT-TTTTCTTCCEEECCSCCEEC
T ss_pred             CCEEECCCCcCCeECHhHcC------------------CCccCCEEECCCCcCCEECHH-HhcCCCCCCEEEecCcCCcC
Confidence            99999999999876665554                  678999999999999754444 78899999999999999874

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.77  E-value=1.2e-17  Score=134.74  Aligned_cols=171  Identities=25%  Similarity=0.270  Sum_probs=134.0

Q ss_pred             cccCCcccEEecCCCccCCCC-CccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccC-ccchhhh
Q 037699            5 FGLSDHLVFLDLSLNNFQGPI-PRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLE-GKIATSF   82 (203)
Q Consensus         5 ~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~   82 (203)
                      +...++++.+++.++...... ...+..+.+++.++++.|.     +....+..+..++.++.+++++|.+. ...|..+
T Consensus       416 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~-----l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~  490 (635)
T 4g8a_A          416 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-----TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF  490 (635)
T ss_dssp             CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSC-----CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred             ccccccccchhhhhccccccccccccccccccccccccccc-----cccccccccccchhhhhhhhhhcccccccCchhh
Confidence            344457777777777654332 3456778888888888886     66677777788888999999888754 3466778


Q ss_pred             hccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccC
Q 037699           83 GRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQ  162 (203)
Q Consensus        83 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~  162 (203)
                      ..+++|++|++++|.+.+..+..+.                  .+++|+.|++++|.+.+ ++...+..+++|+.|++++
T Consensus       491 ~~l~~L~~L~Ls~N~L~~l~~~~f~------------------~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L~~L~Ls~  551 (635)
T 4g8a_A          491 TELRNLTFLDLSQCQLEQLSPTAFN------------------SLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSL  551 (635)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTT------------------TCTTCCEEECTTSCCCB-CCCGGGTTCTTCCEEECTT
T ss_pred             hhccccCEEECCCCccCCcChHHHc------------------CCCCCCEEECCCCcCCC-CChhHHhCCCCCCEEECCC
Confidence            8888999999999988877666555                  68899999999999964 4444788999999999999


Q ss_pred             CccccccCCCCCCC-CCccEEEcCCCCCCCCCCchhhh
Q 037699          163 NSLTLNVSPDWIPP-FQLKELNLESCNLVGNRFPSWLL  199 (203)
Q Consensus       163 n~~~~~~~~~l~~~-~~L~~L~l~~n~l~~~~~p~~~~  199 (203)
                      |++++..+..+..+ ++|++|++++|++.++.--.|+.
T Consensus       552 N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~  589 (635)
T 4g8a_A          552 NHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFL  589 (635)
T ss_dssp             SCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHH
T ss_pred             CcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHH
Confidence            99998888888887 58999999999998876555443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.77  E-value=2e-17  Score=117.82  Aligned_cols=136  Identities=24%  Similarity=0.285  Sum_probs=116.4

Q ss_pred             CCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCC
Q 037699            8 SDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCK   87 (203)
Q Consensus         8 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~   87 (203)
                      .++|+.|++++|.+.+..+..+..+++|++|++++|.     +....+..+..+++|++|++++|.++...+..+..+++
T Consensus        39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-----l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~  113 (229)
T 3e6j_A           39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-----LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVH  113 (229)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-----CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-----CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchh
Confidence            3689999999999998888999999999999999997     66666677889999999999999999666667899999


Q ss_pred             ccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCcccc
Q 037699           88 LRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTL  167 (203)
Q Consensus        88 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~  167 (203)
                      |++|++++|.+... +..+.                  .+++|+.|++++|.+. .++...+..+++|+.|++++|.+..
T Consensus       114 L~~L~Ls~N~l~~l-p~~~~------------------~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          114 LKELFMCCNKLTEL-PRGIE------------------RLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             CCEEECCSSCCCSC-CTTGG------------------GCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             hCeEeccCCccccc-Ccccc------------------cCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCCccC
Confidence            99999999998743 32222                  6789999999999996 5555578899999999999999875


Q ss_pred             c
Q 037699          168 N  168 (203)
Q Consensus       168 ~  168 (203)
                      .
T Consensus       174 ~  174 (229)
T 3e6j_A          174 E  174 (229)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.76  E-value=5.2e-19  Score=132.69  Aligned_cols=187  Identities=17%  Similarity=0.204  Sum_probs=127.6

Q ss_pred             cccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCccccccccc-ccccccCCCCCCCEEEcccc-ccCcc-ch
Q 037699            3 WVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSG-TFSSSVGNLTSIQTLDLSFN-NLEGK-IA   79 (203)
Q Consensus         3 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~l~~~~~L~~L~l~~~-~~~~~-~~   79 (203)
                      ..+..+++|+.|++++|.+++..+..++.+++|++|++++|.    .+.+ .++..+..+++|++|++++| .+++. ++
T Consensus       112 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~----~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~  187 (336)
T 2ast_B          112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS----GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ  187 (336)
T ss_dssp             HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCB----SCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH
T ss_pred             HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCC----CCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH
Confidence            345667899999999999887778888899999999999983    1443 35666778899999999999 88753 57


Q ss_pred             hhhhccC-CccEEEccCC--cCCc-chhhhhhh---ccccccCCccc---ccccc-ccCCCCCEEEccCCc-cccccchh
Q 037699           80 TSFGRLC-KLRSVFLSHS--NMNQ-EISKILNI---FSTCILDGLEV---LEMTE-WQLSSLDSVNLSNNT-LFGSLFEI  147 (203)
Q Consensus        80 ~~~~~l~-~L~~L~l~~n--~~~~-~~~~~~~~---~~~~~~~~l~~---l~~~~-~~~~~L~~L~l~~n~-l~~~~~~~  147 (203)
                      ..+..++ +|++|++++|  .+.. ..+..+..   +....+.+...   ...+. ..+++|+.|++++|. +.+... .
T Consensus       188 ~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~  266 (336)
T 2ast_B          188 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL-L  266 (336)
T ss_dssp             HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG-G
T ss_pred             HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH-H
Confidence            7788999 9999999998  4442 23333222   11111222211   11111 267899999999994 432222 2


Q ss_pred             hhccCCCccEEEccCCccccccCCCCCCC-CCccEEEcCCCCCCCCCCchhhh
Q 037699          148 HFAKLSKLKYFDVSQNSLTLNVSPDWIPP-FQLKELNLESCNLVGNRFPSWLL  199 (203)
Q Consensus       148 ~l~~~~~L~~L~l~~n~~~~~~~~~l~~~-~~L~~L~l~~n~l~~~~~p~~~~  199 (203)
                      .+..+++|+.|++++| ++..   .+..+ .++..|++++|.++ +..|..+.
T Consensus       267 ~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~-~~~~~~~~  314 (336)
T 2ast_B          267 ELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFT-TIARPTIG  314 (336)
T ss_dssp             GGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSC-CTTCSSCS
T ss_pred             HHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCc-cccCCccc
Confidence            5778999999999999 4432   22222 24677778999994 44555443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.76  E-value=3.7e-19  Score=134.95  Aligned_cols=184  Identities=22%  Similarity=0.237  Sum_probs=123.1

Q ss_pred             CcccccCCcccEEecCCCccCCCCC----ccccCCC-CccEEeCCCCcccccccccccccccCCC-----CCCCEEEccc
Q 037699            2 PWVFGLSDHLVFLDLSLNNFQGPIP----RGLGNLT-SLRYLDLSANISILQYLSGTFSSSVGNL-----TSIQTLDLSF   71 (203)
Q Consensus         2 p~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~l~~~-----~~L~~L~l~~   71 (203)
                      |.++...++|+.|++++|.+++..+    ..+..++ +|++|++++|.     +....+..+..+     ++|++|++++
T Consensus        15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-----l~~~~~~~l~~~l~~~~~~L~~L~Ls~   89 (362)
T 3goz_A           15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-----LGFKNSDELVQILAAIPANVTSLNLSG   89 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-----GGGSCHHHHHHHHHTSCTTCCEEECCS
T ss_pred             HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-----CCHHHHHHHHHHHhccCCCccEEECcC
Confidence            3445566679999999999986665    6777888 89999999996     666555555443     8899999999


Q ss_pred             cccCccchhhhhc----c-CCccEEEccCCcCCcchhhhhhhccccccCCccccccccc---------------cC-CCC
Q 037699           72 NNLEGKIATSFGR----L-CKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEW---------------QL-SSL  130 (203)
Q Consensus        72 ~~~~~~~~~~~~~----l-~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~---------------~~-~~L  130 (203)
                      |.+++..+..+..    + ++|++|++++|.+....+..+.........+++.+.+...               .. ++|
T Consensus        90 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L  169 (362)
T 3goz_A           90 NFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV  169 (362)
T ss_dssp             SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             CcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccc
Confidence            9988666654444    3 7899999999998776654432211100123333332211               23 388


Q ss_pred             CEEEccCCccccccch---hhhccC-CCccEEEccCCccccc----cCCCCCC-CCCccEEEcCCCCCC
Q 037699          131 DSVNLSNNTLFGSLFE---IHFAKL-SKLKYFDVSQNSLTLN----VSPDWIP-PFQLKELNLESCNLV  190 (203)
Q Consensus       131 ~~L~l~~n~l~~~~~~---~~l~~~-~~L~~L~l~~n~~~~~----~~~~l~~-~~~L~~L~l~~n~l~  190 (203)
                      +.|++++|.+.+..+.   ..+..+ ++|+.|++++|.++..    ++..+.. .++|++|+|++|.++
T Consensus       170 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  238 (362)
T 3goz_A          170 NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH  238 (362)
T ss_dssp             CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred             cEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence            8888888888654432   123344 5888888888888753    2233333 347888888888883

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.76  E-value=1.3e-17  Score=133.21  Aligned_cols=157  Identities=22%  Similarity=0.298  Sum_probs=124.0

Q ss_pred             ccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCccccccccc--ccccccCCCCCCCEEEccccccCccchh-hh
Q 037699            6 GLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSG--TFSSSVGNLTSIQTLDLSFNNLEGKIAT-SF   82 (203)
Q Consensus         6 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~   82 (203)
                      +..++|+.|++++|.+++..|..+..+++|++|++++|.     +.+  ..|..+..+++|++|++++|.+++.+|. .+
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-----l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~  424 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-----LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC  424 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-----CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-----cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh
Confidence            556799999999999998889999999999999999996     554  3456788999999999999999864555 47


Q ss_pred             hccCCccEEEccCCcCCcchhhhh-hhccccccCCcccccccc--ccCCCCCEEEccCCccccccchhhhccCCCccEEE
Q 037699           83 GRLCKLRSVFLSHSNMNQEISKIL-NIFSTCILDGLEVLEMTE--WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFD  159 (203)
Q Consensus        83 ~~l~~L~~L~l~~n~~~~~~~~~~-~~~~~~~~~~l~~l~~~~--~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~  159 (203)
                      ..+++|++|++++|.+.+..+..+ ..+....+.+...-.++.  ..+++|+.|++++|.++ .++...+..+++|+.++
T Consensus       425 ~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~  503 (562)
T 3a79_B          425 AWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIW  503 (562)
T ss_dssp             CCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEE
T ss_pred             cCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEE
Confidence            788999999999999976655443 233333333333223332  37789999999999996 66664588999999999


Q ss_pred             ccCCccccc
Q 037699          160 VSQNSLTLN  168 (203)
Q Consensus       160 l~~n~~~~~  168 (203)
                      +++|.+.+.
T Consensus       504 l~~N~~~c~  512 (562)
T 3a79_B          504 LHDNPWDCT  512 (562)
T ss_dssp             CCSCCBCCC
T ss_pred             ecCCCcCCC
Confidence            999999864

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.76  E-value=2.7e-17  Score=123.90  Aligned_cols=120  Identities=19%  Similarity=0.220  Sum_probs=69.1

Q ss_pred             cCCCCCCCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhhhhccccccCCcccccc--------cc-ccCC
Q 037699           58 VGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEM--------TE-WQLS  128 (203)
Q Consensus        58 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~--------~~-~~~~  128 (203)
                      +..+++|+.+++++|.+++..+  +..+++|++|++++|.+....+  +..     +.+++.+.+        +. ..++
T Consensus       195 ~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~-----l~~L~~L~l~~n~l~~~~~~~~l~  265 (347)
T 4fmz_A          195 LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LAN-----LSQLTWLEIGTNQISDINAVKDLT  265 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTT-----CTTCCEEECCSSCCCCCGGGTTCT
T ss_pred             ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhc-----CCCCCEEECCCCccCCChhHhcCC
Confidence            3344444444444444442211  4555666666666666554332  111     222222221        11 1566


Q ss_pred             CCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCC
Q 037699          129 SLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNL  189 (203)
Q Consensus       129 ~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l  189 (203)
                      +|+.|++++|.+.+ .+  .+..+++|+.|++++|.+++..+..+..+++|++|++++|.+
T Consensus       266 ~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  323 (347)
T 4fmz_A          266 KLKMLNVGSNQISD-IS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI  323 (347)
T ss_dssp             TCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC
T ss_pred             CcCEEEccCCccCC-Ch--hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcc
Confidence            77788887777753 32  466777888888888877766666667777888888888887

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=2.7e-17  Score=121.18  Aligned_cols=143  Identities=24%  Similarity=0.347  Sum_probs=109.2

Q ss_pred             cccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhc
Q 037699            5 FGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGR   84 (203)
Q Consensus         5 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~   84 (203)
                      +..+++|+.|++++|.+++..+  +..+++|++|++++|.     +.. .+ .+..+++|++|++++|.+++ + ..+..
T Consensus        64 ~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~-----l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~  132 (291)
T 1h6t_A           64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK-----VKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVH  132 (291)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-----CCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGG
T ss_pred             HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCc-----CCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcC
Confidence            4556799999999999985433  8899999999999996     444 33 48889999999999999984 3 46788


Q ss_pred             cCCccEEEccCCcCCcchhhhhhhccccccCCccccccc---------cccCCCCCEEEccCCccccccchhhhccCCCc
Q 037699           85 LCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMT---------EWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKL  155 (203)
Q Consensus        85 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L  155 (203)
                      +++|++|++++|.+... + .+..     +.+++.+.+.         ...+++|+.|++++|.+.+ .+  .+..+++|
T Consensus       133 l~~L~~L~l~~n~l~~~-~-~l~~-----l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~-l~--~l~~l~~L  202 (291)
T 1h6t_A          133 LPQLESLYLGNNKITDI-T-VLSR-----LTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD-LR--ALAGLKNL  202 (291)
T ss_dssp             CTTCCEEECCSSCCCCC-G-GGGG-----CTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB-CG--GGTTCTTC
T ss_pred             CCCCCEEEccCCcCCcc-h-hhcc-----CCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCC-Ch--hhccCCCC
Confidence            99999999999988765 2 2211     2333333322         2267899999999999964 43  47899999


Q ss_pred             cEEEccCCccccc
Q 037699          156 KYFDVSQNSLTLN  168 (203)
Q Consensus       156 ~~L~l~~n~~~~~  168 (203)
                      +.|++++|.++..
T Consensus       203 ~~L~l~~n~i~~~  215 (291)
T 1h6t_A          203 DVLELFSQECLNK  215 (291)
T ss_dssp             SEEEEEEEEEECC
T ss_pred             CEEECcCCcccCC
Confidence            9999999998853

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.75  E-value=1.1e-17  Score=133.20  Aligned_cols=164  Identities=23%  Similarity=0.223  Sum_probs=135.1

Q ss_pred             ccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCccE
Q 037699           11 LVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRS   90 (203)
Q Consensus        11 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   90 (203)
                      ....+.+++.++ .+|..+.  +++++|++++|.     +.+..|..+..+++|++|++++|.+++..+..+..+++|++
T Consensus         7 ~~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   78 (549)
T 2z81_A            7 SGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNK-----ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEH   78 (549)
T ss_dssp             TSEEECTTSCCS-SCCSCCC--TTCCEEECCSSC-----CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CceEECCCCccc-cccccCC--CCccEEECcCCc-----cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCE
Confidence            334677888888 5666553  789999999997     77777888999999999999999999777788999999999


Q ss_pred             EEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccC
Q 037699           91 VFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVS  170 (203)
Q Consensus        91 L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~  170 (203)
                      |++++|.+.+..+..+.                  .+++|++|++++|.+.+......++.+++|+.|++++|.+.+.++
T Consensus        79 L~Ls~n~l~~~~~~~~~------------------~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~  140 (549)
T 2z81_A           79 LDLSDNHLSSLSSSWFG------------------PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR  140 (549)
T ss_dssp             EECTTSCCCSCCHHHHT------------------TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred             EECCCCccCccCHHHhc------------------cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccC
Confidence            99999999887776565                  688999999999999642222267899999999999998544444


Q ss_pred             -CCCCCCCCccEEEcCCCCCCCCCCchhhhcc
Q 037699          171 -PDWIPPFQLKELNLESCNLVGNRFPSWLLSQ  201 (203)
Q Consensus       171 -~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~  201 (203)
                       ..+..+++|++|++++|.+ ....|.++..+
T Consensus       141 ~~~~~~l~~L~~L~L~~n~l-~~~~~~~l~~l  171 (549)
T 2z81_A          141 RIDFAGLTSLNELEIKALSL-RNYQSQSLKSI  171 (549)
T ss_dssp             TTTTTTCCEEEEEEEEETTC-CEECTTTTTTC
T ss_pred             HhhhhcccccCeeeccCCcc-cccChhhhhcc
Confidence             5788999999999999999 44466666554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.74  E-value=4.5e-17  Score=122.67  Aligned_cols=171  Identities=21%  Similarity=0.252  Sum_probs=119.3

Q ss_pred             cccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhc
Q 037699            5 FGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGR   84 (203)
Q Consensus         5 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~   84 (203)
                      +..+++|+.|++++|.+.. .+. +..+++|+.+++++|.     +....+  +..+++|++|++++|.++.. +. +..
T Consensus       173 ~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~-----l~~~~~--~~~~~~L~~L~l~~n~l~~~-~~-~~~  241 (347)
T 4fmz_A          173 IANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQ-----ITDITP--VANMTRLNSLKIGNNKITDL-SP-LAN  241 (347)
T ss_dssp             GGGCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSC-----CCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTT
T ss_pred             hccCCCCCEEEccCCcccc-ccc-ccCCCccceeecccCC-----CCCCch--hhcCCcCCEEEccCCccCCC-cc-hhc
Confidence            4456689999999998874 332 7778888888888885     444433  67778888888888888743 33 777


Q ss_pred             cCCccEEEccCCcCCcchh-hhhhhccccccCCcccccccc-ccCCCCCEEEccCCccccccchhhhccCCCccEEEccC
Q 037699           85 LCKLRSVFLSHSNMNQEIS-KILNIFSTCILDGLEVLEMTE-WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQ  162 (203)
Q Consensus        85 l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~l~~l~~~~-~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~  162 (203)
                      +++|++|++++|.+..... .....+....+.+.....++. ..+++|+.|++++|.+.+..+. .+..+++|+.|++++
T Consensus       242 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~  320 (347)
T 4fmz_A          242 LSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDME-VIGGLTNLTTLFLSQ  320 (347)
T ss_dssp             CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHH-HHHTCTTCSEEECCS
T ss_pred             CCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChh-HhhccccCCEEEccC
Confidence            8888888888887765311 001111111122211111222 2678999999999999754444 788999999999999


Q ss_pred             CccccccCCCCCCCCCccEEEcCCCCC
Q 037699          163 NSLTLNVSPDWIPPFQLKELNLESCNL  189 (203)
Q Consensus       163 n~~~~~~~~~l~~~~~L~~L~l~~n~l  189 (203)
                      |.+++..+  +..+++|++|++++|.|
T Consensus       321 n~l~~~~~--~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          321 NHITDIRP--LASLSKMDSADFANQVI  345 (347)
T ss_dssp             SSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred             CccccccC--hhhhhccceeehhhhcc
Confidence            99986554  78899999999999998

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.74  E-value=8.3e-18  Score=114.11  Aligned_cols=84  Identities=23%  Similarity=0.227  Sum_probs=43.6

Q ss_pred             CcccEEecCCCccC-CCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCC
Q 037699            9 DHLVFLDLSLNNFQ-GPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCK   87 (203)
Q Consensus         9 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~   87 (203)
                      ++++.|++++|.++ +.+|..+..+++|++|++++|.     +...  ..+..+++|++|++++|.+++..|..+..+++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-----l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   96 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-----LISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN   96 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-----CCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-----CCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence            45555666665554 3445555555555555555553     3332  44455555555555555555434444444555


Q ss_pred             ccEEEccCCcCC
Q 037699           88 LRSVFLSHSNMN   99 (203)
Q Consensus        88 L~~L~l~~n~~~   99 (203)
                      |++|++++|.+.
T Consensus        97 L~~L~Ls~N~l~  108 (168)
T 2ell_A           97 LTHLNLSGNKLK  108 (168)
T ss_dssp             CCEEECBSSSCC
T ss_pred             CCEEeccCCccC
Confidence            555555555443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.74  E-value=5.7e-17  Score=117.72  Aligned_cols=149  Identities=22%  Similarity=0.279  Sum_probs=118.5

Q ss_pred             ccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhcc
Q 037699            6 GLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRL   85 (203)
Q Consensus         6 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l   85 (203)
                      ..+++|+.|++++|.++ .++ .+..+++|++|++++|.     +.+..+  +..+++|++|++++|.+++ ++.. .. 
T Consensus        38 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~-----i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~-~~-  105 (263)
T 1xeu_A           38 KELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQ-----ISDLSP--LKDLTKLEELSVNRNRLKN-LNGI-PS-  105 (263)
T ss_dssp             HHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSC-----CCCCGG--GTTCSSCCEEECCSSCCSC-CTTC-CC-
T ss_pred             hhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCc-----cCCChh--hccCCCCCEEECCCCccCC-cCcc-cc-
Confidence            34568999999999888 444 67889999999999986     555443  8889999999999999884 4432 22 


Q ss_pred             CCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCcc
Q 037699           86 CKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSL  165 (203)
Q Consensus        86 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~  165 (203)
                      ++|++|++++|.+....  .+.                  .+++|+.|++++|.+.+ .+  .+..+++|+.|++++|.+
T Consensus       106 ~~L~~L~L~~N~l~~~~--~l~------------------~l~~L~~L~Ls~N~i~~-~~--~l~~l~~L~~L~L~~N~i  162 (263)
T 1xeu_A          106 ACLSRLFLDNNELRDTD--SLI------------------HLKNLEILSIRNNKLKS-IV--MLGFLSKLEVLDLHGNEI  162 (263)
T ss_dssp             SSCCEEECCSSCCSBSG--GGT------------------TCTTCCEEECTTSCCCB-CG--GGGGCTTCCEEECTTSCC
T ss_pred             CcccEEEccCCccCCCh--hhc------------------CcccccEEECCCCcCCC-Ch--HHccCCCCCEEECCCCcC
Confidence            88999999999887631  122                  67899999999999964 33  578899999999999999


Q ss_pred             ccccCCCCCCCCCccEEEcCCCCCCC
Q 037699          166 TLNVSPDWIPPFQLKELNLESCNLVG  191 (203)
Q Consensus       166 ~~~~~~~l~~~~~L~~L~l~~n~l~~  191 (203)
                      ++.  ..+..+++|+.|++++|.+++
T Consensus       163 ~~~--~~l~~l~~L~~L~l~~N~~~~  186 (263)
T 1xeu_A          163 TNT--GGLTRLKKVNWIDLTGQKCVN  186 (263)
T ss_dssp             CBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred             cch--HHhccCCCCCEEeCCCCcccC
Confidence            865  678889999999999999843

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=5.3e-17  Score=130.36  Aligned_cols=61  Identities=25%  Similarity=0.264  Sum_probs=47.4

Q ss_pred             cCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCC
Q 037699          126 QLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVG  191 (203)
Q Consensus       126 ~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~  191 (203)
                      .+++|+.|++++|.+.+..+   +..+++|+.|+|++|.+++.  +.+..+++|+.|+|++|.+++
T Consensus       151 ~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          151 RLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             SCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred             ccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence            67788888888888864332   67888888889888888753  457778888899888888744

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.74  E-value=6.2e-17  Score=109.79  Aligned_cols=141  Identities=21%  Similarity=0.141  Sum_probs=116.2

Q ss_pred             CCCCccEEeCCCCcccccccc-cccccccCCCCCCCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhhhhc
Q 037699           31 NLTSLRYLDLSANISILQYLS-GTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIF  109 (203)
Q Consensus        31 ~l~~L~~L~l~~~~~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  109 (203)
                      ..+++++|++++|.     +. +.+|..+..+++|++|++++|.++..  ..+..+++|++|++++|.+....+..+.  
T Consensus        22 ~~~~L~~L~l~~n~-----l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--   92 (168)
T 2ell_A           22 TPAAVRELVLDNCK-----SNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAE--   92 (168)
T ss_dssp             CTTSCSEEECCSCB-----CBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHH--
T ss_pred             CcccCCEEECCCCC-----CChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHh--
Confidence            34789999999996     55 46788888999999999999999854  7788999999999999999875555544  


Q ss_pred             cccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccC---CCCCCCCCccEEEcCC
Q 037699          110 STCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVS---PDWIPPFQLKELNLES  186 (203)
Q Consensus       110 ~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~---~~l~~~~~L~~L~l~~  186 (203)
                                      .+++|+.|++++|.+.+......+..+++|+.|++++|.+++..+   ..+..+++|++|++++
T Consensus        93 ----------------~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~  156 (168)
T 2ell_A           93 ----------------KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD  156 (168)
T ss_dssp             ----------------HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred             ----------------hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence                            578999999999999643222478899999999999999985443   3678899999999999


Q ss_pred             CCCCCCCCchhh
Q 037699          187 CNLVGNRFPSWL  198 (203)
Q Consensus       187 n~l~~~~~p~~~  198 (203)
                      |.+  ..+|+..
T Consensus       157 n~~--~~~~~~~  166 (168)
T 2ell_A          157 RED--QEAPDSD  166 (168)
T ss_dssp             TTS--CBCCSSS
T ss_pred             CCh--hhccccc
Confidence            998  6666643

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.73  E-value=3.3e-16  Score=122.16  Aligned_cols=79  Identities=23%  Similarity=0.214  Sum_probs=40.3

Q ss_pred             CCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCC
Q 037699            8 SDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCK   87 (203)
Q Consensus         8 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~   87 (203)
                      +++|+.|++++|.+++. +  ++.+++|++|++++|.     +.+. +  +..+++|++|++++|.+++ ++  ++.+++
T Consensus        63 l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~-----l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~  128 (457)
T 3bz5_A           63 LTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNK-----LTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPL  128 (457)
T ss_dssp             CTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSC-----CSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTT
T ss_pred             cCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCC-----Ccee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCc
Confidence            34555555555555432 2  4455555555555553     3222 1  4555555666665555553 22  455556


Q ss_pred             ccEEEccCCcCCc
Q 037699           88 LRSVFLSHSNMNQ  100 (203)
Q Consensus        88 L~~L~l~~n~~~~  100 (203)
                      |++|++++|.+.+
T Consensus       129 L~~L~l~~N~l~~  141 (457)
T 3bz5_A          129 LTYLNCARNTLTE  141 (457)
T ss_dssp             CCEEECTTSCCSC
T ss_pred             CCEEECCCCccce
Confidence            6666666655544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.72  E-value=9.2e-17  Score=111.33  Aligned_cols=130  Identities=22%  Similarity=0.293  Sum_probs=76.2

Q ss_pred             ccEEecCCCccCCCCCccccCCCCccEEeCCCCccccccccccccc-ccCCCCCCCEEEccccccCccchhhhhccCCcc
Q 037699           11 LVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSS-SVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLR   89 (203)
Q Consensus        11 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~   89 (203)
                      -+.++++++.++ .+|..+..  ++++|++++|.     +....+. .+..+++|++|++++|.+++..|..+..+++|+
T Consensus        10 ~~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~-----i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   81 (192)
T 1w8a_A           10 GTTVDCTGRGLK-EIPRDIPL--HTTELLLNDNE-----LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ   81 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCCT--TCSEEECCSCC-----CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred             CCEEEcCCCCcC-cCccCCCC--CCCEEECCCCc-----CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCC
Confidence            356777777775 45554432  67777777775     4444433 356666777777777777655566666666666


Q ss_pred             EEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCcccc
Q 037699           90 SVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTL  167 (203)
Q Consensus        90 ~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~  167 (203)
                      +|++++|.+....+..+.                  .+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+++
T Consensus        82 ~L~Ls~N~l~~~~~~~~~------------------~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           82 ELQLGENKIKEISNKMFL------------------GLHQLKTLNLYDNQISCVMPG-SFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             EEECCSCCCCEECSSSST------------------TCTTCCEEECCSSCCCEECTT-SSTTCTTCCEEECTTCCBCC
T ss_pred             EEECCCCcCCccCHHHhc------------------CCCCCCEEECCCCcCCeeCHH-HhhcCCCCCEEEeCCCCccC
Confidence            666666666554333222                  345566666666655433232 45555556666666655553

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.72  E-value=1.5e-16  Score=124.50  Aligned_cols=164  Identities=21%  Similarity=0.278  Sum_probs=118.6

Q ss_pred             cccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhc
Q 037699            5 FGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGR   84 (203)
Q Consensus         5 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~   84 (203)
                      ++.+++|+.|++++|.+++.  +.+..+++|++|++++|.     +....+  +..+++|+.|++++|.+++.. . +..
T Consensus       217 ~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~-----l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~-~~~  285 (466)
T 1o6v_A          217 LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQ-----ISNLAP--LSGLTKLTELKLGANQISNIS-P-LAG  285 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC-----CCCCGG--GTTCTTCSEEECCSSCCCCCG-G-GTT
T ss_pred             ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCc-----cccchh--hhcCCCCCEEECCCCccCccc-c-ccC
Confidence            34456888899998888742  467788888888888885     444433  677888888888888887433 3 777


Q ss_pred             cCCccEEEccCCcCCcchhhhhhhccccccCCccccccc---------cccCCCCCEEEccCCccccccchhhhccCCCc
Q 037699           85 LCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMT---------EWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKL  155 (203)
Q Consensus        85 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L  155 (203)
                      +++|++|++++|.+.+..+  +..     +++++.+.+.         ...+++|+.|++++|.+.+. +  .+..+++|
T Consensus       286 l~~L~~L~L~~n~l~~~~~--~~~-----l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~--~l~~l~~L  355 (466)
T 1o6v_A          286 LTALTNLELNENQLEDISP--ISN-----LKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV-S--SLANLTNI  355 (466)
T ss_dssp             CTTCSEEECCSSCCSCCGG--GGG-----CTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC-G--GGTTCTTC
T ss_pred             CCccCeEEcCCCcccCchh--hcC-----CCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCc-h--hhccCCCC
Confidence            8888888888888776443  111     2233332221         22678899999999988643 2  57788999


Q ss_pred             cEEEccCCccccccCCCCCCCCCccEEEcCCCCCCC
Q 037699          156 KYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVG  191 (203)
Q Consensus       156 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~  191 (203)
                      +.|++++|.+++..+  +..+++|+.|++++|.+++
T Consensus       356 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          356 NWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             CEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            999999999887655  7888899999999998843

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=1.3e-16  Score=128.15  Aligned_cols=157  Identities=22%  Similarity=0.284  Sum_probs=127.6

Q ss_pred             cCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccC
Q 037699            7 LSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLC   86 (203)
Q Consensus         7 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~   86 (203)
                      .+++|+.|++++|.+.. ++ .+..+++|+.|++++|.     +....+  +..+++|+.|++++|.+.+ ++ .+..++
T Consensus        41 ~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~-----l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~  109 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNK-----LTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLK  109 (605)
T ss_dssp             HHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSC-----CCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCT
T ss_pred             cCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCC-----CCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCC
Confidence            34589999999999873 44 58889999999999996     555444  8899999999999999983 33 688999


Q ss_pred             CccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccc
Q 037699           87 KLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT  166 (203)
Q Consensus        87 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~  166 (203)
                      +|++|++++|.+... + .+.                  .+++|+.|++++|.+.+ . . .+..+++|+.|+|++|.++
T Consensus       110 ~L~~L~Ls~N~l~~l-~-~l~------------------~l~~L~~L~Ls~N~l~~-l-~-~l~~l~~L~~L~Ls~N~l~  166 (605)
T 1m9s_A          110 KLKSLSLEHNGISDI-N-GLV------------------HLPQLESLYLGNNKITD-I-T-VLSRLTKLDTLSLEDNQIS  166 (605)
T ss_dssp             TCCEEECTTSCCCCC-G-GGG------------------GCTTCSEEECCSSCCCC-C-G-GGGSCTTCSEEECCSSCCC
T ss_pred             CCCEEEecCCCCCCC-c-ccc------------------CCCccCEEECCCCccCC-c-h-hhcccCCCCEEECcCCcCC
Confidence            999999999998763 1 122                  67899999999999964 3 2 6889999999999999998


Q ss_pred             cccCCCCCCCCCccEEEcCCCCCCCCCCchhhhccc
Q 037699          167 LNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQK  202 (203)
Q Consensus       167 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~~  202 (203)
                      +..+  +..+++|+.|+|++|.|+  .+| .+..++
T Consensus       167 ~~~~--l~~l~~L~~L~Ls~N~i~--~l~-~l~~l~  197 (605)
T 1m9s_A          167 DIVP--LAGLTKLQNLYLSKNHIS--DLR-ALAGLK  197 (605)
T ss_dssp             CCGG--GTTCTTCCEEECCSSCCC--BCG-GGTTCT
T ss_pred             Cchh--hccCCCCCEEECcCCCCC--CCh-HHccCC
Confidence            7555  888999999999999994  344 355543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.72  E-value=1.5e-16  Score=105.76  Aligned_cols=129  Identities=21%  Similarity=0.221  Sum_probs=92.4

Q ss_pred             CCcccEEecCCCccC-CCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccC
Q 037699            8 SDHLVFLDLSLNNFQ-GPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLC   86 (203)
Q Consensus         8 ~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~   86 (203)
                      .++++.|++++|.++ +.+|..+..+++|++|++++|.     +...  ..+..+++|++|++++|.+++..|..+..++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-----l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~   88 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-----LTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP   88 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-----CCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-----CCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence            357888888888887 5677777888888888888885     4444  6677788888888888888865777777788


Q ss_pred             CccEEEccCCcCCcch-hhhhhhccccccCCccccccccccCCCCCEEEccCCccccccc--hhhhccCCCccEEEcc
Q 037699           87 KLRSVFLSHSNMNQEI-SKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLF--EIHFAKLSKLKYFDVS  161 (203)
Q Consensus        87 ~L~~L~l~~n~~~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~~~~L~~L~l~  161 (203)
                      +|++|++++|.+.+.. +..+.                  .+++|+.|++++|.+.+..+  ...+..+++|+.|+++
T Consensus        89 ~L~~L~ls~N~i~~~~~~~~~~------------------~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           89 NLTHLNLSGNKIKDLSTIEPLK------------------KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TCCEEECTTSCCCSHHHHGGGG------------------GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCEEECCCCcCCChHHHHHHh------------------hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            8888888888776532 22222                  56777777777777754322  1356677777777665

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.72  E-value=3.3e-16  Score=122.47  Aligned_cols=163  Identities=23%  Similarity=0.226  Sum_probs=127.2

Q ss_pred             cccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhc
Q 037699            5 FGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGR   84 (203)
Q Consensus         5 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~   84 (203)
                      +..+++|+.|++++|.+.+..+  ++.+++|++|++++|.     +...  ..+..+++|++|++++|.+++..+  +..
T Consensus       195 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~-----l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~  263 (466)
T 1o6v_A          195 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ-----LKDI--GTLASLTNLTDLDLANNQISNLAP--LSG  263 (466)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSC-----CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred             hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCC-----cccc--hhhhcCCCCCEEECCCCccccchh--hhc
Confidence            4556799999999999985544  7789999999999996     4443  357789999999999999985444  888


Q ss_pred             cCCccEEEccCCcCCcchhhhhhhccccccCCccccccc---------cccCCCCCEEEccCCccccccchhhhccCCCc
Q 037699           85 LCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMT---------EWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKL  155 (203)
Q Consensus        85 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L  155 (203)
                      +++|++|++++|.+....+  +..     +.+++.+.+.         ...+++|+.|++++|.+.+..+   +..+++|
T Consensus       264 l~~L~~L~l~~n~l~~~~~--~~~-----l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L  333 (466)
T 1o6v_A          264 LTKLTELKLGANQISNISP--LAG-----LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKL  333 (466)
T ss_dssp             CTTCSEEECCSSCCCCCGG--GTT-----CTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG---GGGCTTC
T ss_pred             CCCCCEEECCCCccCcccc--ccC-----CCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh---hccCccC
Confidence            9999999999999886544  211     2333333322         2267899999999999865433   5788999


Q ss_pred             cEEEccCCccccccCCCCCCCCCccEEEcCCCCCC
Q 037699          156 KYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLV  190 (203)
Q Consensus       156 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~  190 (203)
                      +.|++++|.+++.  +.+..+++|++|++++|.++
T Consensus       334 ~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~  366 (466)
T 1o6v_A          334 QRLFFYNNKVSDV--SSLANLTNINWLSAGHNQIS  366 (466)
T ss_dssp             CEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred             CEeECCCCccCCc--hhhccCCCCCEEeCCCCccC
Confidence            9999999998864  46788899999999999993

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.72  E-value=3.7e-18  Score=130.50  Aligned_cols=185  Identities=16%  Similarity=0.169  Sum_probs=129.6

Q ss_pred             ccccCCcccEEecCCCccCCC----CCccccCCCCccEEeCCCCccccccccccccccc-------CCCCCCCEEEcccc
Q 037699            4 VFGLSDHLVFLDLSLNNFQGP----IPRGLGNLTSLRYLDLSANISILQYLSGTFSSSV-------GNLTSIQTLDLSFN   72 (203)
Q Consensus         4 ~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l-------~~~~~L~~L~l~~~   72 (203)
                      .+..+++|+.|++++|.++..    ++..+..+++|++|++++|..  ..+.+..|..+       ..+++|++|++++|
T Consensus        27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~--~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n  104 (386)
T 2ca6_A           27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT--GRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  104 (386)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCT--TSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccccc--CccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence            344567899999999998865    334477899999999998730  01333344443       78899999999999


Q ss_pred             ccCc----cchhhhhccCCccEEEccCCcCCcchhhhhhh-ccccc-------cCCcccccccc---------------c
Q 037699           73 NLEG----KIATSFGRLCKLRSVFLSHSNMNQEISKILNI-FSTCI-------LDGLEVLEMTE---------------W  125 (203)
Q Consensus        73 ~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~~~~~-------~~~l~~l~~~~---------------~  125 (203)
                      .++.    .++..+..+++|++|++++|.+....+..+.. +....       .+.++.+.+..               .
T Consensus       105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~  184 (386)
T 2ca6_A          105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ  184 (386)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence            9986    47778899999999999999986544433321 11000       02333333211               1


Q ss_pred             cCCCCCEEEccCCcccccc----chhhhccCCCccEEEccCCccc----cccCCCCCCCCCccEEEcCCCCCC
Q 037699          126 QLSSLDSVNLSNNTLFGSL----FEIHFAKLSKLKYFDVSQNSLT----LNVSPDWIPPFQLKELNLESCNLV  190 (203)
Q Consensus       126 ~~~~L~~L~l~~n~l~~~~----~~~~l~~~~~L~~L~l~~n~~~----~~~~~~l~~~~~L~~L~l~~n~l~  190 (203)
                      .+++|+.|++++|.+.+..    ....+..+++|+.|++++|.++    ..++..+..+++|++|+|++|.++
T Consensus       185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~  257 (386)
T 2ca6_A          185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  257 (386)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCc
Confidence            5678999999999885321    1215678889999999999986    445666778889999999999983

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=2e-16  Score=110.03  Aligned_cols=133  Identities=18%  Similarity=0.199  Sum_probs=110.0

Q ss_pred             cccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhc
Q 037699            5 FGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGR   84 (203)
Q Consensus         5 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~   84 (203)
                      +..+++|+.|++++|.++  .+..+..+++|++|++++|.     +....+..+..+++|++|++++|.+++..+..+..
T Consensus        62 l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~-----l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~  134 (197)
T 4ezg_A           62 IEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKD-----VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT  134 (197)
T ss_dssp             GGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTT-----CBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTT
T ss_pred             HhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCc-----cCcccChhhcCCCCCCEEEecCCccCcHhHHHHhh
Confidence            455679999999999765  34578899999999999997     77777888999999999999999999878899999


Q ss_pred             cCCccEEEccCCc-CCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCC
Q 037699           85 LCKLRSVFLSHSN-MNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQN  163 (203)
Q Consensus        85 l~~L~~L~l~~n~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n  163 (203)
                      +++|++|++++|. +... + .+.                  .+++|+.|++++|.+.+ .+  .+..+++|+.|++++|
T Consensus       135 l~~L~~L~L~~n~~i~~~-~-~l~------------------~l~~L~~L~l~~n~i~~-~~--~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          135 LPKVNSIDLSYNGAITDI-M-PLK------------------TLPELKSLNIQFDGVHD-YR--GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             CSSCCEEECCSCTBCCCC-G-GGG------------------GCSSCCEEECTTBCCCC-CT--TGGGCSSCCEEEECBC
T ss_pred             CCCCCEEEccCCCCcccc-H-hhc------------------CCCCCCEEECCCCCCcC-hH--HhccCCCCCEEEeeCc
Confidence            9999999999998 5543 2 222                  67899999999999964 33  5778999999999999


Q ss_pred             cccc
Q 037699          164 SLTL  167 (203)
Q Consensus       164 ~~~~  167 (203)
                      ++.+
T Consensus       192 ~i~~  195 (197)
T 4ezg_A          192 TIGG  195 (197)
T ss_dssp             ----
T ss_pred             ccCC
Confidence            9864

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=2.3e-16  Score=109.34  Aligned_cols=111  Identities=22%  Similarity=0.219  Sum_probs=54.8

Q ss_pred             CCCEEEccccccCccchh-hhhccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccc
Q 037699           63 SIQTLDLSFNNLEGKIAT-SFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLF  141 (203)
Q Consensus        63 ~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~  141 (203)
                      ++++|++++|.++...+. .+..+++|++|++++|.+.+..+..+.                  .+++|+.|++++|.+.
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~------------------~l~~L~~L~Ls~N~l~   91 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE------------------GASHIQELQLGENKIK   91 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTT------------------TCTTCCEEECCSCCCC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcC------------------CcccCCEEECCCCcCC
Confidence            455555555555433222 245555555555555555444333332                  3445555555555554


Q ss_pred             cccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCC
Q 037699          142 GSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGN  192 (203)
Q Consensus       142 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~  192 (203)
                      +. +...+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.++
T Consensus        92 ~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A           92 EI-SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             EE-CSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             cc-CHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            22 222344555555555555555544444555555555555555555443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.70  E-value=3.7e-16  Score=108.31  Aligned_cols=80  Identities=20%  Similarity=0.330  Sum_probs=38.9

Q ss_pred             cEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCccEE
Q 037699           12 VFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSV   91 (203)
Q Consensus        12 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L   91 (203)
                      +.++++++.++ .+|..+.  .++++|++++|.     +. .+|..+..+++|++|++++|.++...+..|..+++|++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~-----i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L   83 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQ-----FT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTL   83 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSC-----CC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCc-----Cc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEE
Confidence            34555555555 3443322  345555555553     22 334445555555555555555554434444555555555


Q ss_pred             EccCCcCCc
Q 037699           92 FLSHSNMNQ  100 (203)
Q Consensus        92 ~l~~n~~~~  100 (203)
                      ++++|.+..
T Consensus        84 ~Ls~N~l~~   92 (193)
T 2wfh_A           84 ILSYNRLRC   92 (193)
T ss_dssp             ECCSSCCCB
T ss_pred             ECCCCccCE
Confidence            555554443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.70  E-value=4e-18  Score=130.28  Aligned_cols=187  Identities=17%  Similarity=0.204  Sum_probs=132.4

Q ss_pred             ccccCCcccEEecCCCccC---CCCCccc-------cCCCCccEEeCCCCccccccccc----ccccccCCCCCCCEEEc
Q 037699            4 VFGLSDHLVFLDLSLNNFQ---GPIPRGL-------GNLTSLRYLDLSANISILQYLSG----TFSSSVGNLTSIQTLDL   69 (203)
Q Consensus         4 ~~~~~~~L~~L~l~~~~~~---~~~~~~~-------~~l~~L~~L~l~~~~~~~~~~~~----~~~~~l~~~~~L~~L~l   69 (203)
                      .+..+++|+.|++++|.+.   +.+|..+       ..+++|++|++++|.     +..    .++..+..+++|++|++
T Consensus        55 ~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~-----l~~~~~~~l~~~l~~~~~L~~L~L  129 (386)
T 2ca6_A           55 NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-----FGPTAQEPLIDFLSKHTPLEHLYL  129 (386)
T ss_dssp             TTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-----CCTTTHHHHHHHHHHCTTCCEEEC
T ss_pred             HHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc-----CCHHHHHHHHHHHHhCCCCCEEEC
Confidence            3556779999999997544   3445444       688999999999996     555    46777888999999999


Q ss_pred             cccccCccchhh----hhcc---------CCccEEEccCCcCCcc-hhhhhhhccccccCCcccccc-------------
Q 037699           70 SFNNLEGKIATS----FGRL---------CKLRSVFLSHSNMNQE-ISKILNIFSTCILDGLEVLEM-------------  122 (203)
Q Consensus        70 ~~~~~~~~~~~~----~~~l---------~~L~~L~l~~n~~~~~-~~~~~~~~~~~~~~~l~~l~~-------------  122 (203)
                      ++|.++...+..    +..+         ++|++|++++|.+... .+.....+..  +.+++.+.+             
T Consensus       130 ~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~--~~~L~~L~L~~n~l~~~g~~~l  207 (386)
T 2ca6_A          130 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS--HRLLHTVKMVQNGIRPEGIEHL  207 (386)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH--CTTCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh--CCCcCEEECcCCCCCHhHHHHH
Confidence            999997443333    4444         8999999999999743 3321111111  122222221             


Q ss_pred             ---ccccCCCCCEEEccCCccc----cccchhhhccCCCccEEEccCCccccc----cCCCC--CCCCCccEEEcCCCCC
Q 037699          123 ---TEWQLSSLDSVNLSNNTLF----GSLFEIHFAKLSKLKYFDVSQNSLTLN----VSPDW--IPPFQLKELNLESCNL  189 (203)
Q Consensus       123 ---~~~~~~~L~~L~l~~n~l~----~~~~~~~l~~~~~L~~L~l~~n~~~~~----~~~~l--~~~~~L~~L~l~~n~l  189 (203)
                         ....+++|+.|++++|.++    ..++. .+..+++|+.|++++|.++..    ++..+  ..+++|+.|+|++|.+
T Consensus       208 ~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i  286 (386)
T 2ca6_A          208 LLEGLAYCQELKVLDLQDNTFTHLGSSALAI-ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI  286 (386)
T ss_dssp             HHTTGGGCTTCCEEECCSSCCHHHHHHHHHH-HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred             HHHHhhcCCCccEEECcCCCCCcHHHHHHHH-HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence               1126789999999999985    23444 678899999999999999864    34444  3378999999999999


Q ss_pred             CCC---CCchhh
Q 037699          190 VGN---RFPSWL  198 (203)
Q Consensus       190 ~~~---~~p~~~  198 (203)
                      ++.   .+|..+
T Consensus       287 ~~~g~~~l~~~l  298 (386)
T 2ca6_A          287 ELDAVRTLKTVI  298 (386)
T ss_dssp             BHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            321   377666

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.69  E-value=5.9e-16  Score=120.73  Aligned_cols=166  Identities=19%  Similarity=0.135  Sum_probs=109.0

Q ss_pred             cccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhc
Q 037699            5 FGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGR   84 (203)
Q Consensus         5 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~   84 (203)
                      ++.+++|+.|++++|.+++ .| .+..+++|++|++++|.     +.+. +  +..+++|++|++++|.+++. +  ++.
T Consensus        38 ~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~-----l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~  104 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNN-----ITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTP  104 (457)
T ss_dssp             HHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSC-----CSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTT
T ss_pred             hhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCc-----CCeE-c--cccCCCCCEEECcCCCCcee-e--cCC
Confidence            3445799999999999985 45 68899999999999996     5553 3  78899999999999999853 3  889


Q ss_pred             cCCccEEEccCCcCCcchhhhhhhccccccC-------------Cccccccc---------cccCCCCCEEEccCCcccc
Q 037699           85 LCKLRSVFLSHSNMNQEISKILNIFSTCILD-------------GLEVLEMT---------EWQLSSLDSVNLSNNTLFG  142 (203)
Q Consensus        85 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~-------------~l~~l~~~---------~~~~~~L~~L~l~~n~l~~  142 (203)
                      +++|++|++++|.+..........+....+.             .++.+.+.         ...+++|+.|++++|.+++
T Consensus       105 l~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~  184 (457)
T 3bz5_A          105 LTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE  184 (457)
T ss_dssp             CTTCCEEECCSSCCSCCCCTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC
T ss_pred             CCcCCEEECCCCcCCeecCCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce
Confidence            9999999999999876421111111111111             11111111         1133455555555555532


Q ss_pred             ccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCC
Q 037699          143 SLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLV  190 (203)
Q Consensus       143 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~  190 (203)
                       ++   +..+++|+.|++++|.+++.   .+..+++|++|++++|.++
T Consensus       185 -l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~  225 (457)
T 3bz5_A          185 -LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLT  225 (457)
T ss_dssp             -CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCS
T ss_pred             -ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccc
Confidence             22   44556666666666666542   2556677777777777773

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.69  E-value=8.4e-17  Score=107.01  Aligned_cols=130  Identities=18%  Similarity=0.155  Sum_probs=105.8

Q ss_pred             CCCccEEeCCCCcccccccc-cccccccCCCCCCCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhhhhcc
Q 037699           32 LTSLRYLDLSANISILQYLS-GTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFS  110 (203)
Q Consensus        32 l~~L~~L~l~~~~~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~  110 (203)
                      .+++++|++++|.     +. +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+....+..+.   
T Consensus        16 ~~~l~~L~l~~n~-----l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~---   85 (149)
T 2je0_A           16 PSDVKELVLDNSR-----SNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAE---   85 (149)
T ss_dssp             GGGCSEEECTTCB-----CBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHH---
T ss_pred             CccCeEEEccCCc-----CChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhh---
Confidence            4779999999996     65 57788889999999999999999854  6788899999999999999876565554   


Q ss_pred             ccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccC---CCCCCCCCccEEEcCC
Q 037699          111 TCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVS---PDWIPPFQLKELNLES  186 (203)
Q Consensus       111 ~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~---~~l~~~~~L~~L~l~~  186 (203)
                                     .+++|+.|++++|.+.+......+..+++|+.|++++|.+++..+   ..+..+++|+.|++++
T Consensus        86 ---------------~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           86 ---------------KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ---------------HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             ---------------hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence                           578899999999999643222368899999999999999986543   3577788999998763

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.69  E-value=2.4e-16  Score=125.54  Aligned_cols=75  Identities=19%  Similarity=0.299  Sum_probs=33.7

Q ss_pred             cccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCcc
Q 037699           10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLR   89 (203)
Q Consensus        10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~   89 (203)
                      +++.|++++|.+++ +|..+  .++|++|++++|.     +. .+|   ..+++|++|++++|.+++ +|. +..  +|+
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~-----l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~  123 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNA-----LI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLK  123 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSC-----CS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCC-----Cc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCC
Confidence            45555555555553 33333  2445555555553     22 223   223445555555555542 333 222  445


Q ss_pred             EEEccCCcCCc
Q 037699           90 SVFLSHSNMNQ  100 (203)
Q Consensus        90 ~L~l~~n~~~~  100 (203)
                      +|++++|.+..
T Consensus       124 ~L~Ls~N~l~~  134 (571)
T 3cvr_A          124 HLDVDNNQLTM  134 (571)
T ss_dssp             EEECCSSCCSC
T ss_pred             EEECCCCcCCC
Confidence            55555544443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.68  E-value=1.6e-15  Score=120.78  Aligned_cols=167  Identities=20%  Similarity=0.255  Sum_probs=116.6

Q ss_pred             CcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCc
Q 037699            9 DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL   88 (203)
Q Consensus         9 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L   88 (203)
                      ++|+.|++++|.++ .+|   ..+++|++|++++|.     +.. +|. +..  +|++|++++|.+++ +|.   .+++|
T Consensus        80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~-----l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L  142 (571)
T 3cvr_A           80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNR-----LST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALL  142 (571)
T ss_dssp             TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSC-----CSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTC
T ss_pred             CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCC-----CCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccc
Confidence            58999999999999 566   457999999999996     555 566 554  89999999999985 666   68899


Q ss_pred             cEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCc-------cEEEcc
Q 037699           89 RSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKL-------KYFDVS  161 (203)
Q Consensus        89 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L-------~~L~l~  161 (203)
                      +.|++++|.+..... ....+..+.+.+...-.++... ++|+.|++++|.++ .++.  +..  +|       +.|+++
T Consensus       143 ~~L~Ls~N~l~~lp~-~l~~L~~L~Ls~N~L~~lp~l~-~~L~~L~Ls~N~L~-~lp~--~~~--~L~~~~~~L~~L~Ls  215 (571)
T 3cvr_A          143 EYINADNNQLTMLPE-LPTSLEVLSVRNNQLTFLPELP-ESLEALDVSTNLLE-SLPA--VPV--RNHHSEETEIFFRCR  215 (571)
T ss_dssp             CEEECCSSCCSCCCC-CCTTCCEEECCSSCCSCCCCCC-TTCCEEECCSSCCS-SCCC--CC----------CCEEEECC
T ss_pred             cEEeCCCCccCcCCC-cCCCcCEEECCCCCCCCcchhh-CCCCEEECcCCCCC-chhh--HHH--hhhcccccceEEecC
Confidence            999999999876332 2222222222222222222212 67888888888875 4544  222  55       888888


Q ss_pred             CCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhcc
Q 037699          162 QNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQ  201 (203)
Q Consensus       162 ~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~  201 (203)
                      +|.++ .+|..+..+++|+.|+|++|.+ ....|..+..+
T Consensus       216 ~N~l~-~lp~~l~~l~~L~~L~L~~N~l-~~~~p~~l~~l  253 (571)
T 3cvr_A          216 ENRIT-HIPENILSLDPTCTIILEDNPL-SSRIRESLSQQ  253 (571)
T ss_dssp             SSCCC-CCCGGGGGSCTTEEEECCSSSC-CHHHHHHHHHH
T ss_pred             CCcce-ecCHHHhcCCCCCEEEeeCCcC-CCcCHHHHHHh
Confidence            88887 4666666788888888888888 44566666543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.67  E-value=4.2e-16  Score=117.68  Aligned_cols=181  Identities=14%  Similarity=0.137  Sum_probs=123.5

Q ss_pred             CCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccc-cccCCCCCCCE-EEccccccCccchhhhhcc
Q 037699            8 SDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFS-SSVGNLTSIQT-LDLSFNNLEGKIATSFGRL   85 (203)
Q Consensus         8 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~l~~~~~L~~-L~l~~~~~~~~~~~~~~~l   85 (203)
                      .++++.|++++|.++...+.+|.++++|++|++++|.     +.+.++ ..+.++++++. +.+..|.++...+..|..+
T Consensus        29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~-----i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l  103 (350)
T 4ay9_X           29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND-----VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNL  103 (350)
T ss_dssp             CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCT-----TCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCC
T ss_pred             CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCC-----CCCccChhHhhcchhhhhhhcccCCcccccCchhhhhc
Confidence            4589999999999996566789999999999999996     655444 45788888776 5566788886667788999


Q ss_pred             CCccEEEccCCcCCcchhhhhhh-ccc--ccc-CCccccccccc---c-CCCCCEEEccCCccccccchhhhccCCCccE
Q 037699           86 CKLRSVFLSHSNMNQEISKILNI-FST--CIL-DGLEVLEMTEW---Q-LSSLDSVNLSNNTLFGSLFEIHFAKLSKLKY  157 (203)
Q Consensus        86 ~~L~~L~l~~n~~~~~~~~~~~~-~~~--~~~-~~l~~l~~~~~---~-~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~  157 (203)
                      ++|+++++++|.+....+..+.. ...  ... .......++..   . ...++.|++++|.+. .++...+ ...+++.
T Consensus       104 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f-~~~~L~~  181 (350)
T 4ay9_X          104 PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAF-NGTQLDE  181 (350)
T ss_dssp             TTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSS-TTEEEEE
T ss_pred             cccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhc-cccchhH
Confidence            99999999999887654432211 100  001 11111112211   2 245788899999885 5555333 4567888


Q ss_pred             EEccC-CccccccCCCCCCCCCccEEEcCCCCCCCCCCchh
Q 037699          158 FDVSQ-NSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSW  197 (203)
Q Consensus       158 L~l~~-n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~  197 (203)
                      +++.+ |.++......+..+++|++|++++|+|  ..+|..
T Consensus       182 l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l--~~lp~~  220 (350)
T 4ay9_X          182 LNLSDNNNLEELPNDVFHGASGPVILDISRTRI--HSLPSY  220 (350)
T ss_dssp             EECTTCTTCCCCCTTTTTTEECCSEEECTTSCC--CCCCSS
T ss_pred             HhhccCCcccCCCHHHhccCcccchhhcCCCCc--CccChh
Confidence            88875 555543345677888899999999888  556553

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.66  E-value=2.3e-15  Score=104.28  Aligned_cols=136  Identities=16%  Similarity=0.196  Sum_probs=100.9

Q ss_pred             cEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhhhhccccccC
Q 037699           36 RYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILD  115 (203)
Q Consensus        36 ~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~  115 (203)
                      +.++++++.     +. .+|..+.  +++++|++++|.++ .+|..+..+++|++|++++|.+....+..+.        
T Consensus        13 ~~l~~~~~~-----l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~--------   75 (193)
T 2wfh_A           13 TVVRCSNKG-----LK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFS--------   75 (193)
T ss_dssp             TEEECTTSC-----CS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTT--------
T ss_pred             CEEEcCCCC-----CC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHcc--------
Confidence            567777774     33 3454432  47888888888887 6777888888888888888888766555444        


Q ss_pred             CccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCc
Q 037699          116 GLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFP  195 (203)
Q Consensus       116 ~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p  195 (203)
                                .+++|+.|++++|.+. .++...+..+++|+.|++++|.++...+..+..+++|+.|++++|.+.++.-.
T Consensus        76 ----------~l~~L~~L~Ls~N~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l  144 (193)
T 2wfh_A           76 ----------NMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM  144 (193)
T ss_dssp             ----------TCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             ----------CCCCCCEEECCCCccC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence                      6778888888888886 44444678888888888888888865555677888888888888888666554


Q ss_pred             hhhh
Q 037699          196 SWLL  199 (203)
Q Consensus       196 ~~~~  199 (203)
                      .|+.
T Consensus       145 ~~l~  148 (193)
T 2wfh_A          145 QWLS  148 (193)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.64  E-value=2.3e-17  Score=128.65  Aligned_cols=180  Identities=18%  Similarity=0.101  Sum_probs=105.0

Q ss_pred             cccEEecCCCccCCC----CCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCcc----chhh
Q 037699           10 HLVFLDLSLNNFQGP----IPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGK----IATS   81 (203)
Q Consensus        10 ~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~   81 (203)
                      +|+.|++++|.++..    ++..+..+++|++|++++|...........+.....+++|++|++++|.++..    ++..
T Consensus       200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  279 (461)
T 1z7x_W          200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV  279 (461)
T ss_dssp             CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence            666777777766643    34555567777777777775111111111122333567788888888877743    5666


Q ss_pred             hhccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccc---------------cCCCCCEEEccCCccccccch
Q 037699           82 FGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEW---------------QLSSLDSVNLSNNTLFGSLFE  146 (203)
Q Consensus        82 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~---------------~~~~L~~L~l~~n~l~~~~~~  146 (203)
                      +..+++|++|++++|.+....+..+..........++.+.+..+               .+++|+.|++++|.+.+..+.
T Consensus       280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~  359 (461)
T 1z7x_W          280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR  359 (461)
T ss_dssp             HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred             HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence            67778888888888877654443332111100123333332211               346778888888777543322


Q ss_pred             hhhcc-----CCCccEEEccCCcccc----ccCCCCCCCCCccEEEcCCCCCC
Q 037699          147 IHFAK-----LSKLKYFDVSQNSLTL----NVSPDWIPPFQLKELNLESCNLV  190 (203)
Q Consensus       147 ~~l~~-----~~~L~~L~l~~n~~~~----~~~~~l~~~~~L~~L~l~~n~l~  190 (203)
                       .+..     .++|+.|++++|.++.    .++..+..+++|++|++++|.++
T Consensus       360 -~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~  411 (461)
T 1z7x_W          360 -ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  411 (461)
T ss_dssp             -HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             -HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence             2221     5577888888887774    44555556777888888888773

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.64  E-value=7.1e-15  Score=100.42  Aligned_cols=130  Identities=22%  Similarity=0.313  Sum_probs=70.2

Q ss_pred             cccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCcc
Q 037699           10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLR   89 (203)
Q Consensus        10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~   89 (203)
                      ..+.++++++.++ .+|..+  ..++++|++++|.     +....+..+..+++|++|++++|.++...+..+..+++|+
T Consensus         8 ~~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~   79 (177)
T 2o6r_A            8 SGTEIRCNSKGLT-SVPTGI--PSSATRLELESNK-----LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLT   79 (177)
T ss_dssp             ETTEEECCSSCCS-SCCTTC--CTTCSEEECCSSC-----CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCc-----ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccC
Confidence            3456677777666 344332  2566777777765     5544444556666666676666666644344455566666


Q ss_pred             EEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccc
Q 037699           90 SVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT  166 (203)
Q Consensus        90 ~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~  166 (203)
                      +|++++|.+....+..+.                  .+++|+.|++++|.+. ..+...+..+++|+.|++++|.++
T Consensus        80 ~L~l~~N~l~~~~~~~~~------------------~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           80 ILYLHENKLQSLPNGVFD------------------KLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             EEECCSSCCCCCCTTTTT------------------TCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             EEECCCCCccccCHHHhh------------------CCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCee
Confidence            666666655543332222                  3445555555555553 333323444555555555555544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.64  E-value=7.5e-15  Score=100.29  Aligned_cols=130  Identities=21%  Similarity=0.216  Sum_probs=97.4

Q ss_pred             ccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhhhhcccccc
Q 037699           35 LRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCIL  114 (203)
Q Consensus        35 L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  114 (203)
                      .+.++++++.     +.. +|..+  .+++++|++++|.+++..+..+..+++|++|++++|.+....+..+.       
T Consensus         9 ~~~l~~~~~~-----l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-------   73 (177)
T 2o6r_A            9 GTEIRCNSKG-----LTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFD-------   73 (177)
T ss_dssp             TTEEECCSSC-----CSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT-------
T ss_pred             CCEEEecCCC-----Ccc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHcc-------
Confidence            4567777774     333 34332  35789999999998865556678889999999999988765544443       


Q ss_pred             CCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCC
Q 037699          115 DGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVG  191 (203)
Q Consensus       115 ~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~  191 (203)
                                 .+++|+.|++++|.++ ..+...+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus        74 -----------~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           74 -----------KLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             -----------TCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             -----------CCCccCEEECCCCCcc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence                       6788999999999886 4444467788899999999999886555556778899999999999844

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.64  E-value=7e-16  Score=112.00  Aligned_cols=152  Identities=16%  Similarity=0.192  Sum_probs=120.9

Q ss_pred             cccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCcc
Q 037699           10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLR   89 (203)
Q Consensus        10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~   89 (203)
                      +++.++++++.+++ ++ .+..+++|+.|++++|.     +.. ++ .+..+++|++|++++|.+++. +. +..+++|+
T Consensus        20 ~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~-----i~~-l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~   88 (263)
T 1xeu_A           20 NAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSN-----IQS-LA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLE   88 (263)
T ss_dssp             HHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSC-----CCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCC
T ss_pred             HHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCC-----ccc-ch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCC
Confidence            56677888888874 33 57789999999999995     443 34 678899999999999999854 44 89999999


Q ss_pred             EEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCcccccc
Q 037699           90 SVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNV  169 (203)
Q Consensus        90 ~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~  169 (203)
                      +|++++|.+.....  ..                  . ++|+.|++++|.+.+ .+  .+..+++|+.|++++|.+++. 
T Consensus        89 ~L~L~~N~l~~l~~--~~------------------~-~~L~~L~L~~N~l~~-~~--~l~~l~~L~~L~Ls~N~i~~~-  143 (263)
T 1xeu_A           89 ELSVNRNRLKNLNG--IP------------------S-ACLSRLFLDNNELRD-TD--SLIHLKNLEILSIRNNKLKSI-  143 (263)
T ss_dssp             EEECCSSCCSCCTT--CC------------------C-SSCCEEECCSSCCSB-SG--GGTTCTTCCEEECTTSCCCBC-
T ss_pred             EEECCCCccCCcCc--cc------------------c-CcccEEEccCCccCC-Ch--hhcCcccccEEECCCCcCCCC-
Confidence            99999998875321  00                  2 789999999999964 33  578999999999999999864 


Q ss_pred             CCCCCCCCCccEEEcCCCCCCCCCCchhhhcc
Q 037699          170 SPDWIPPFQLKELNLESCNLVGNRFPSWLLSQ  201 (203)
Q Consensus       170 ~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~  201 (203)
                       +.+..+++|++|++++|.+++.   ..+..+
T Consensus       144 -~~l~~l~~L~~L~L~~N~i~~~---~~l~~l  171 (263)
T 1xeu_A          144 -VMLGFLSKLEVLDLHGNEITNT---GGLTRL  171 (263)
T ss_dssp             -GGGGGCTTCCEEECTTSCCCBC---TTSTTC
T ss_pred             -hHHccCCCCCEEECCCCcCcch---HHhccC
Confidence             3678899999999999999443   444444

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.62  E-value=3.4e-16  Score=118.65  Aligned_cols=172  Identities=22%  Similarity=0.172  Sum_probs=123.3

Q ss_pred             EEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccc----cccCCCC-CCCEEEccccccCccchhhhhcc--
Q 037699           13 FLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFS----SSVGNLT-SIQTLDLSFNNLEGKIATSFGRL--   85 (203)
Q Consensus        13 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~l--   85 (203)
                      .+++++|.+++.+|..+....+|++|++++|.     +....+    ..+..++ +|++|++++|.+++..+..+..+  
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~-----l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~   76 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNN-----LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA   76 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSC-----GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHH
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCC-----CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHh
Confidence            46788999998888777777789999999997     666555    6777888 89999999999997777777765  


Q ss_pred             ---CCccEEEccCCcCCcchhhhhhhccccccCCccccccccc---------------c-CCCCCEEEccCCccccccch
Q 037699           86 ---CKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEW---------------Q-LSSLDSVNLSNNTLFGSLFE  146 (203)
Q Consensus        86 ---~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~---------------~-~~~L~~L~l~~n~l~~~~~~  146 (203)
                         ++|++|++++|.+....+..+.........+++.+.+...               . .++|+.|++++|.+.+....
T Consensus        77 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~  156 (362)
T 3goz_A           77 AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD  156 (362)
T ss_dssp             TSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH
T ss_pred             ccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH
Confidence               8999999999999876655432211000133444433211               1 35899999999988643322


Q ss_pred             ---hhhccCC-CccEEEccCCccccccCCC----CCCC-CCccEEEcCCCCC
Q 037699          147 ---IHFAKLS-KLKYFDVSQNSLTLNVSPD----WIPP-FQLKELNLESCNL  189 (203)
Q Consensus       147 ---~~l~~~~-~L~~L~l~~n~~~~~~~~~----l~~~-~~L~~L~l~~n~l  189 (203)
                         ..+...+ +|+.|++++|.+++..+..    +... ++|++|+|++|.+
T Consensus       157 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i  208 (362)
T 3goz_A          157 ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLL  208 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred             HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCC
Confidence               1334554 8999999999988654432    3334 4899999999998

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.62  E-value=3.2e-16  Score=122.17  Aligned_cols=162  Identities=15%  Similarity=0.122  Sum_probs=65.9

Q ss_pred             cccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCC-------------CEEEccccccCc
Q 037699           10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSI-------------QTLDLSFNNLEG   76 (203)
Q Consensus        10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L-------------~~L~l~~~~~~~   76 (203)
                      +|+.+++++|.+ +.+|..++++.+|++|++++|.     +.+..|..++.+.+|             +++++++|.+++
T Consensus        12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~-----~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~   85 (454)
T 1jl5_A           12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSE-----WERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS   85 (454)
T ss_dssp             -----------------------CCHHHHHHHHHH-----HHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC
T ss_pred             cchhhhcccCch-hhCChhHhcccchhhhhccCCc-----ccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc
Confidence            667777777776 4666667777777777776665     555556555554432             555555555542


Q ss_pred             cchhhhhccCCccEEEccCCcCCcchhhhhh--------------------hccccccCCcccccccc-ccCCCCCEEEc
Q 037699           77 KIATSFGRLCKLRSVFLSHSNMNQEISKILN--------------------IFSTCILDGLEVLEMTE-WQLSSLDSVNL  135 (203)
Q Consensus        77 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--------------------~~~~~~~~~l~~l~~~~-~~~~~L~~L~l  135 (203)
                       +|.   ..++|++|++++|.+.+. +....                    .+....+.+...-.++. ..+++|+.|++
T Consensus        86 -lp~---~~~~L~~L~l~~n~l~~l-p~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l  160 (454)
T 1jl5_A           86 -LPE---LPPHLESLVASCNSLTEL-PELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDV  160 (454)
T ss_dssp             -CCS---CCTTCSEEECCSSCCSSC-CCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCCCCTTCTTCCEEEC
T ss_pred             -CCC---CcCCCCEEEccCCcCCcc-ccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCcccCCCCCCCEEEC
Confidence             222   113444445544444431 11111                    11111111111111111 14455566666


Q ss_pred             cCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCC
Q 037699          136 SNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNL  189 (203)
Q Consensus       136 ~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l  189 (203)
                      ++|.+. .++.    ...+|+.|++++|.+++ ++ .+..+++|++|++++|.+
T Consensus       161 ~~N~l~-~lp~----~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l  207 (454)
T 1jl5_A          161 DNNSLK-KLPD----LPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSL  207 (454)
T ss_dssp             CSSCCS-CCCC----CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCC
T ss_pred             CCCcCc-ccCC----CcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcC
Confidence            665554 2322    12356666666666654 33 466666777777777776

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.62  E-value=3.4e-14  Score=114.42  Aligned_cols=64  Identities=34%  Similarity=0.317  Sum_probs=36.1

Q ss_pred             CCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhccc
Q 037699          128 SSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQK  202 (203)
Q Consensus       128 ~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~~  202 (203)
                      ++|+.|++++|.++ .++    ..+++|+.|++++|.++. ++.   .+++|+.|++++|.+  ..+|..+..++
T Consensus       221 ~~L~~L~Ls~N~L~-~lp----~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L--~~lp~~l~~l~  284 (622)
T 3g06_A          221 SGLKELIVSGNRLT-SLP----VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQL--TRLPESLIHLS  284 (622)
T ss_dssp             TTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC--CSCCGGGGGSC
T ss_pred             CCCCEEEccCCccC-cCC----CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCC--CcCCHHHhhcc
Confidence            45666666666654 233    234566666666666652 332   345666666666666  35666665554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.61  E-value=8.3e-15  Score=100.02  Aligned_cols=133  Identities=18%  Similarity=0.123  Sum_probs=94.8

Q ss_pred             ccCCcccEEecCCCccCCCCCccccCCC-CccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhc
Q 037699            6 GLSDHLVFLDLSLNNFQGPIPRGLGNLT-SLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGR   84 (203)
Q Consensus         6 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~   84 (203)
                      ..+.+|+.|++++|.++ .++. +..+. +|++|++++|.     +.+.  ..+..+++|++|++++|.++...+..+..
T Consensus        16 ~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~-----l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~   86 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNE-----IRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQA   86 (176)
T ss_dssp             ECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSC-----CCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred             CCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCC-----CCcc--cccccCCCCCEEECCCCcccccCcchhhc
Confidence            34558888999999888 4444 44444 88999999886     5443  56778888889999888888443344588


Q ss_pred             cCCccEEEccCCcCCcchh-hhhhhccccccCCccccccccccCCCCCEEEccCCccccccchh---hhccCCCccEEEc
Q 037699           85 LCKLRSVFLSHSNMNQEIS-KILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEI---HFAKLSKLKYFDV  160 (203)
Q Consensus        85 l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~---~l~~~~~L~~L~l  160 (203)
                      +++|++|++++|.+..... ..+.                  .+++|+.|++++|.+. ..+..   .+..+++|+.|++
T Consensus        87 l~~L~~L~L~~N~i~~~~~~~~l~------------------~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~  147 (176)
T 1a9n_A           87 LPDLTELILTNNSLVELGDLDPLA------------------SLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDF  147 (176)
T ss_dssp             CTTCCEEECCSCCCCCGGGGGGGG------------------GCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETT
T ss_pred             CCCCCEEECCCCcCCcchhhHhhh------------------cCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCC
Confidence            8888888888888854332 1222                  5678888888888885 44432   3677888888888


Q ss_pred             cCCccc
Q 037699          161 SQNSLT  166 (203)
Q Consensus       161 ~~n~~~  166 (203)
                      ++|...
T Consensus       148 ~~n~~~  153 (176)
T 1a9n_A          148 QKVKLK  153 (176)
T ss_dssp             EECCHH
T ss_pred             CcCCHH
Confidence            888765

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.61  E-value=1.3e-15  Score=124.82  Aligned_cols=163  Identities=21%  Similarity=0.194  Sum_probs=82.5

Q ss_pred             cccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCcc
Q 037699           10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLR   89 (203)
Q Consensus        10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~   89 (203)
                      .++.+++.++.+.. .+..+-....|..+.+...... +......+..+..+..|+.|++++|.+. .+|..+..+++|+
T Consensus       174 ~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~-~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~  250 (727)
T 4b8c_D          174 LTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDI-ENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLT  250 (727)
T ss_dssp             --------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCS
T ss_pred             ccceEEeeCCCCCc-chhhHhhcCccCcccccCcccc-ccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCC
Confidence            46667777776663 3333333333333332221100 0012245666777778888888888877 6666666778888


Q ss_pred             EEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCcccccc
Q 037699           90 SVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNV  169 (203)
Q Consensus        90 ~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~  169 (203)
                      +|++++|.+. ..|..+.                  .+++|+.|++++|.++ .+|. .++.+++|+.|+|++|.++ .+
T Consensus       251 ~L~Ls~N~l~-~lp~~~~------------------~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~L~~N~l~-~l  308 (727)
T 4b8c_D          251 RLYLNGNSLT-ELPAEIK------------------NLSNLRVLDLSHNRLT-SLPA-ELGSCFQLKYFYFFDNMVT-TL  308 (727)
T ss_dssp             CCBCTTSCCS-CCCGGGG------------------GGTTCCEEECTTSCCS-SCCS-SGGGGTTCSEEECCSSCCC-CC
T ss_pred             EEEeeCCcCc-ccChhhh------------------CCCCCCEEeCcCCcCC-ccCh-hhcCCCCCCEEECCCCCCC-cc
Confidence            8888888776 3333333                  5677888888888875 5555 5677788888888888776 56


Q ss_pred             CCCCCCCCCccEEEcCCCCCCCCCCchhh
Q 037699          170 SPDWIPPFQLKELNLESCNLVGNRFPSWL  198 (203)
Q Consensus       170 ~~~l~~~~~L~~L~l~~n~l~~~~~p~~~  198 (203)
                      |..+..+++|++|+|++|.+ ...+|.++
T Consensus       309 p~~~~~l~~L~~L~L~~N~l-~~~~p~~~  336 (727)
T 4b8c_D          309 PWEFGNLCNLQFLGVEGNPL-EKQFLKIL  336 (727)
T ss_dssp             CSSTTSCTTCCCEECTTSCC-CSHHHHHH
T ss_pred             ChhhhcCCCccEEeCCCCcc-CCCChHHH
Confidence            66677777888888888887 33445544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.61  E-value=1e-17  Score=116.69  Aligned_cols=152  Identities=22%  Similarity=0.226  Sum_probs=120.8

Q ss_pred             CcccEEecCCCccCCCCCc------cccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhh
Q 037699            9 DHLVFLDLSLNNFQGPIPR------GLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSF   82 (203)
Q Consensus         9 ~~L~~L~l~~~~~~~~~~~------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~   82 (203)
                      ..++.++++.+.+.+..|.      .+..+++|++|++++|.     +.. +| .+..+++|++|++++|.++ .+|..+
T Consensus        18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-----l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~   89 (198)
T 1ds9_A           18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-----IEK-IS-SLSGMENLRILSLGRNLIK-KIENLD   89 (198)
T ss_dssp             TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-----ESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH
T ss_pred             ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-----Ccc-cc-ccccCCCCCEEECCCCCcc-cccchh
Confidence            4666677777777766665      88999999999999996     555 55 7888999999999999998 778888


Q ss_pred             hccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccC
Q 037699           83 GRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQ  162 (203)
Q Consensus        83 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~  162 (203)
                      ..+++|++|++++|.+... + .+.                  .+++|+.|++++|.+.+......+..+++|+.|++++
T Consensus        90 ~~~~~L~~L~L~~N~l~~l-~-~~~------------------~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~  149 (198)
T 1ds9_A           90 AVADTLEELWISYNQIASL-S-GIE------------------KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG  149 (198)
T ss_dssp             HHHHHCSEEEEEEEECCCH-H-HHH------------------HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECS
T ss_pred             hcCCcCCEEECcCCcCCcC-C-ccc------------------cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecC
Confidence            8889999999999998763 2 232                  5678999999999996422223678899999999999


Q ss_pred             CccccccCCC----------CCCCCCccEEEcCCCCCC
Q 037699          163 NSLTLNVSPD----------WIPPFQLKELNLESCNLV  190 (203)
Q Consensus       163 n~~~~~~~~~----------l~~~~~L~~L~l~~n~l~  190 (203)
                      |.+++..+..          +..+++|+.|+  +|.++
T Consensus       150 N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          150 NPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             CHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            9998765542          66788999887  67764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.60  E-value=4.9e-14  Score=109.82  Aligned_cols=77  Identities=23%  Similarity=0.261  Sum_probs=40.6

Q ss_pred             CcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCc
Q 037699            9 DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL   88 (203)
Q Consensus         9 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L   88 (203)
                      ++|+.|++++|.+++ +|..   +.+|++|++++|.     +.+ ++..   .++|++|++++|.+++ +| .++.+++|
T Consensus        91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~-----l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L  155 (454)
T 1jl5_A           91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNN-----LKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFL  155 (454)
T ss_dssp             TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSC-----CSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTC
T ss_pred             CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCc-----cCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCC
Confidence            356666666666653 3332   2455555555553     222 1111   1356666666666653 44 36666666


Q ss_pred             cEEEccCCcCCc
Q 037699           89 RSVFLSHSNMNQ  100 (203)
Q Consensus        89 ~~L~l~~n~~~~  100 (203)
                      ++|++++|.+.+
T Consensus       156 ~~L~l~~N~l~~  167 (454)
T 1jl5_A          156 KIIDVDNNSLKK  167 (454)
T ss_dssp             CEEECCSSCCSC
T ss_pred             CEEECCCCcCcc
Confidence            666666666554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.60  E-value=4.1e-16  Score=127.87  Aligned_cols=87  Identities=23%  Similarity=0.274  Sum_probs=47.8

Q ss_pred             cccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhc
Q 037699            5 FGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGR   84 (203)
Q Consensus         5 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~   84 (203)
                      +...+.|+.|++++|.+. .+|..+..+.+|++|++++|.     +. .+|..+..+++|++|++++|.++ .+|..++.
T Consensus       220 ~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~-----l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~  291 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNS-----LT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS  291 (727)
T ss_dssp             --CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSC-----CS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred             hccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCc-----Cc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence            344445556666666555 444444455566666666553     33 44555555556666666666655 45555555


Q ss_pred             cCCccEEEccCCcCC
Q 037699           85 LCKLRSVFLSHSNMN   99 (203)
Q Consensus        85 l~~L~~L~l~~n~~~   99 (203)
                      +++|++|++++|.+.
T Consensus       292 l~~L~~L~L~~N~l~  306 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVT  306 (727)
T ss_dssp             GTTCSEEECCSSCCC
T ss_pred             CCCCCEEECCCCCCC
Confidence            666666666655554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.59  E-value=4.2e-15  Score=101.49  Aligned_cols=133  Identities=22%  Similarity=0.283  Sum_probs=107.0

Q ss_pred             cccCCCCccEEeCCCCcccccccccccccccCCCC-CCCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhh
Q 037699           28 GLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLT-SIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKIL  106 (203)
Q Consensus        28 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  106 (203)
                      .+..+.+|++|++++|.     +.. ++. +..+. +|++|++++|.+++.  ..+..+++|++|++++|.+....+..+
T Consensus        14 ~~~~~~~L~~L~l~~n~-----l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~   84 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYK-----IPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLD   84 (176)
T ss_dssp             EEECTTSCEEEECTTSC-----CCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHH
T ss_pred             hcCCcCCceEEEeeCCC-----Cch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchh
Confidence            45678899999999996     553 344 44444 999999999999843  678899999999999999987654443


Q ss_pred             hhccccccCCccccccccccCCCCCEEEccCCccccccch-hhhccCCCccEEEccCCccccccCCC----CCCCCCccE
Q 037699          107 NIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFE-IHFAKLSKLKYFDVSQNSLTLNVSPD----WIPPFQLKE  181 (203)
Q Consensus       107 ~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~----l~~~~~L~~  181 (203)
                      .                  .+++|+.|++++|.+. .++. ..+..+++|+.|++++|.++ .++..    +..+++|+.
T Consensus        85 ~------------------~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~  144 (176)
T 1a9n_A           85 Q------------------ALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRV  144 (176)
T ss_dssp             H------------------HCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSE
T ss_pred             h------------------cCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccce
Confidence            4                  6789999999999995 4443 36788999999999999998 44553    778899999


Q ss_pred             EEcCCCCC
Q 037699          182 LNLESCNL  189 (203)
Q Consensus       182 L~l~~n~l  189 (203)
                      |++++|.+
T Consensus       145 Ld~~~n~~  152 (176)
T 1a9n_A          145 LDFQKVKL  152 (176)
T ss_dssp             ETTEECCH
T ss_pred             eCCCcCCH
Confidence            99999876

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.57  E-value=1.8e-14  Score=115.96  Aligned_cols=67  Identities=30%  Similarity=0.182  Sum_probs=55.4

Q ss_pred             cCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhh
Q 037699          126 QLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLL  199 (203)
Q Consensus       126 ~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~  199 (203)
                      .+++|+.|++++|.+. .++.    .+++|+.|++++|.++ .+|..+..+++|+.|+|++|.++ ...|..+.
T Consensus       239 ~l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~-~~~~~~l~  305 (622)
T 3g06_A          239 LPSELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS-ERTLQALR  305 (622)
T ss_dssp             CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCC-HHHHHHHH
T ss_pred             CCCcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCC-CcCHHHHH
Confidence            4678999999999996 5554    6789999999999999 67888899999999999999993 44455444

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.56  E-value=1.2e-15  Score=118.93  Aligned_cols=89  Identities=24%  Similarity=0.287  Sum_probs=43.2

Q ss_pred             cCCcccEEecCCCccCCCCCccc-cCCC----CccEEeCCCCccccccccc----ccccccCCCCCCCEEEccccccCcc
Q 037699            7 LSDHLVFLDLSLNNFQGPIPRGL-GNLT----SLRYLDLSANISILQYLSG----TFSSSVGNLTSIQTLDLSFNNLEGK   77 (203)
Q Consensus         7 ~~~~L~~L~l~~~~~~~~~~~~~-~~l~----~L~~L~l~~~~~~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~   77 (203)
                      .+++|++|++++|.+++..+..+ ..+.    +|++|++++|.     +..    .++..+..+++|++|++++|.+++.
T Consensus        54 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-----i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  128 (461)
T 1z7x_W           54 VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-----LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA  128 (461)
T ss_dssp             TCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC-----CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred             hCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCC-----CCHHHHHHHHHHHccCCceeEEECCCCcCchH
Confidence            34566666666666543222222 1222    46666666664     332    3355555566666666666655433


Q ss_pred             chhhhhc-----cCCccEEEccCCcCCc
Q 037699           78 IATSFGR-----LCKLRSVFLSHSNMNQ  100 (203)
Q Consensus        78 ~~~~~~~-----l~~L~~L~l~~n~~~~  100 (203)
                      .+..+..     .++|++|++++|.+..
T Consensus       129 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~  156 (461)
T 1z7x_W          129 GLQLLCEGLLDPQCRLEKLQLEYCSLSA  156 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred             HHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence            2222221     2345555555555543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.56  E-value=1.9e-14  Score=108.54  Aligned_cols=183  Identities=20%  Similarity=0.129  Sum_probs=121.0

Q ss_pred             cccccCCcccEEecCCCccCCCCC-ccccCCCCccE-EeCCCCcccccccccccccccCCCCCCCEEEccccccCccchh
Q 037699            3 WVFGLSDHLVFLDLSLNNFQGPIP-RGLGNLTSLRY-LDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIAT   80 (203)
Q Consensus         3 ~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~-L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~   80 (203)
                      ..|..+++|++|++++|.+.+.++ .+|.+++++++ +.+..|.     +....+..+..+++|+++++++|.++...+.
T Consensus        48 ~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~-----l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~  122 (350)
T 4ay9_X           48 GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN-----LLYINPEAFQNLPNLQYLLISNTGIKHLPDV  122 (350)
T ss_dssp             TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT-----CCEECTTSBCCCTTCCEEEEEEECCSSCCCC
T ss_pred             HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc-----ccccCchhhhhccccccccccccccccCCch
Confidence            367778899999999999865444 57788988776 5555665     7777788899999999999999999855555


Q ss_pred             hhhccCCccEEEccC-CcCCcchhhhhhhc----cccccCC--ccccccccccCCCCCEEEccCCccccccchhhhccCC
Q 037699           81 SFGRLCKLRSVFLSH-SNMNQEISKILNIF----STCILDG--LEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLS  153 (203)
Q Consensus        81 ~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~----~~~~~~~--l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~  153 (203)
                      .+....++..+++.+ +.+.......+...    ....+.+  ++.+........+++.+++.++...+.++...|..++
T Consensus       123 ~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~  202 (350)
T 4ay9_X          123 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS  202 (350)
T ss_dssp             TTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEE
T ss_pred             hhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCc
Confidence            566667788888865 44544333322211    1111222  2222222335567889999764433577776788999


Q ss_pred             CccEEEccCCccccccCCCCCCCCCccEEEcCCC-CCCCCCCc
Q 037699          154 KLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESC-NLVGNRFP  195 (203)
Q Consensus       154 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n-~l~~~~~p  195 (203)
                      +|+.|++++|+++...+..+   .+|+.|.+.++ .+  ..+|
T Consensus       203 ~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l--~~lP  240 (350)
T 4ay9_X          203 GPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNL--KKLP  240 (350)
T ss_dssp             CCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTC--CCCC
T ss_pred             ccchhhcCCCCcCccChhhh---ccchHhhhccCCCc--CcCC
Confidence            99999999999985433333   34555554443 33  4455

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.50  E-value=2.3e-13  Score=108.63  Aligned_cols=122  Identities=20%  Similarity=0.220  Sum_probs=89.7

Q ss_pred             CccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhhhhccccc
Q 037699           34 SLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCI  113 (203)
Q Consensus        34 ~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~  113 (203)
                      .|+.|++++|.     +.+ +|. +..+++|+.|++++|.++ .+|..++.+++|+.|++++|.+.+. | .+.      
T Consensus       442 ~L~~L~Ls~n~-----l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l-p-~l~------  505 (567)
T 1dce_A          442 DVRVLHLAHKD-----LTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVA------  505 (567)
T ss_dssp             TCSEEECTTSC-----CSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGT------
T ss_pred             CceEEEecCCC-----CCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCC-c-ccC------
Confidence            47788888885     444 455 778888888888888888 7788888888888888888888753 2 222      


Q ss_pred             cCCccccccccccCCCCCEEEccCCcccccc-chhhhccCCCccEEEccCCccccccCCC---CCCCCCccEEEc
Q 037699          114 LDGLEVLEMTEWQLSSLDSVNLSNNTLFGSL-FEIHFAKLSKLKYFDVSQNSLTLNVSPD---WIPPFQLKELNL  184 (203)
Q Consensus       114 ~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~~~~---l~~~~~L~~L~l  184 (203)
                                  .+++|+.|++++|.+++.. |. .++.+++|+.|++++|.+++.++..   +..+++|+.|++
T Consensus       506 ------------~l~~L~~L~Ls~N~l~~~~~p~-~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          506 ------------NLPRLQELLLCNNRLQQSAAIQ-PLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             ------------TCSSCCEEECCSSCCCSSSTTG-GGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             ------------CCCCCcEEECCCCCCCCCCCcH-HHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence                        5778888888888886443 44 6788888999999999888644321   123677888764

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.49  E-value=2.5e-13  Score=92.51  Aligned_cols=104  Identities=18%  Similarity=0.270  Sum_probs=54.2

Q ss_pred             cEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhhhhccccccC
Q 037699           36 RYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILD  115 (203)
Q Consensus        36 ~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~  115 (203)
                      +.++++++.     + ..+|..+.  ++|++|++++|.+++..|..+..+++|++|++++|.+....+..+.        
T Consensus        15 ~~l~~~~n~-----l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~--------   78 (174)
T 2r9u_A           15 TLVNCQNIR-----L-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD--------   78 (174)
T ss_dssp             SEEECCSSC-----C-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT--------
T ss_pred             cEEEeCCCC-----C-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhC--------
Confidence            566666663     2 33444332  5666666666666655555566666666666666655543332222        


Q ss_pred             CccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccc
Q 037699          116 GLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT  166 (203)
Q Consensus       116 ~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~  166 (203)
                                .+++|+.|++++|.+. .++...+..+++|+.|++++|.+.
T Consensus        79 ----------~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           79 ----------KLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             ----------TCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ----------CcchhhEEECCCCccc-eeCHHHhccccCCCEEEeCCCCcc
Confidence                      3445555555555553 233323445555555555555544

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.49  E-value=3.4e-13  Score=91.49  Aligned_cols=58  Identities=22%  Similarity=0.238  Sum_probs=30.5

Q ss_pred             ccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCccEEEccCCcCCc
Q 037699           35 LRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQ  100 (203)
Q Consensus        35 L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  100 (203)
                      .+.++++++.     +. .+|..+  .+++++|++++|.+++..+..|..+++|++|++++|.+..
T Consensus        11 ~~~l~~s~n~-----l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~   68 (170)
T 3g39_A           11 GTTVDCSGKS-----LA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV   68 (170)
T ss_dssp             TTEEECTTSC-----CS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC
T ss_pred             CCEEEeCCCC-----cC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc
Confidence            3556666663     22 234333  2456666666666654445555555555555555555544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.48  E-value=1.1e-15  Score=116.07  Aligned_cols=162  Identities=15%  Similarity=0.094  Sum_probs=106.0

Q ss_pred             CcccEEecCCCccCCCCCccccC-----CCCccEEeCCCCccccccccccccccc-CCCCCCCEEEccccccCccchhhh
Q 037699            9 DHLVFLDLSLNNFQGPIPRGLGN-----LTSLRYLDLSANISILQYLSGTFSSSV-GNLTSIQTLDLSFNNLEGKIATSF   82 (203)
Q Consensus         9 ~~L~~L~l~~~~~~~~~~~~~~~-----l~~L~~L~l~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~   82 (203)
                      ++++.+++++|.++......+..     ..+|++|++++|.     +.......+ ..+++|++|++++|.++......+
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-----l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L  146 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-----LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDL  146 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-----CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-----CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHH
Confidence            47889999999887543333322     2689999999986     433222222 234578899999998875443333


Q ss_pred             h-----ccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccc---hhhhccCCC
Q 037699           83 G-----RLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLF---EIHFAKLSK  154 (203)
Q Consensus        83 ~-----~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~---~~~l~~~~~  154 (203)
                      .     ..++|++|++++|.+.......+.....              ..++|++|++++|.+.+...   ...+...+.
T Consensus       147 ~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~--------------~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~  212 (372)
T 3un9_A          147 RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA--------------GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQ  212 (372)
T ss_dssp             HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH--------------TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSC
T ss_pred             HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh--------------cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCC
Confidence            2     3577999999999886544333211000              46778899999988864321   124566778


Q ss_pred             ccEEEccCCcccccc----CCCCCCCCCccEEEcCCCCC
Q 037699          155 LKYFDVSQNSLTLNV----SPDWIPPFQLKELNLESCNL  189 (203)
Q Consensus       155 L~~L~l~~n~~~~~~----~~~l~~~~~L~~L~l~~n~l  189 (203)
                      |+.|++++|.++...    ...+...++|++|+|++|.|
T Consensus       213 L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          213 LQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             CCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred             cCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence            999999999887532    22334467889999999988

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.47  E-value=7.4e-13  Score=89.81  Aligned_cols=108  Identities=24%  Similarity=0.258  Sum_probs=91.1

Q ss_pred             cccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCcc
Q 037699           10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLR   89 (203)
Q Consensus        10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~   89 (203)
                      ..+.++++++.++ .+|..+  ..++++|++++|.     +....+..+..+++|++|++++|.++...+..|..+++|+
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~-----i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~   81 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQ-----ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLT   81 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSC-----CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCc-----CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCC
Confidence            5678999999998 566655  3889999999997     7888788899999999999999999966666688999999


Q ss_pred             EEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccc
Q 037699           90 SVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGS  143 (203)
Q Consensus        90 ~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~  143 (203)
                      +|++++|.+....+..+.                  .+++|+.|++++|.+...
T Consensus        82 ~L~L~~N~l~~~~~~~~~------------------~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           82 QLSLNDNQLKSIPRGAFD------------------NLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             EEECCSSCCCCCCTTTTT------------------TCTTCCEEECCSSCBCTT
T ss_pred             EEECCCCccCEeCHHHhc------------------CCCCCCEEEeCCCCCCCC
Confidence            999999999876665554                  678999999999988643

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.45  E-value=1.1e-12  Score=104.77  Aligned_cols=137  Identities=23%  Similarity=0.293  Sum_probs=105.0

Q ss_pred             CCCccccCCCCccEEe-CCCCccccccccccccc------ccCC--CCCCCEEEccccccCccchhhhhccCCccEEEcc
Q 037699           24 PIPRGLGNLTSLRYLD-LSANISILQYLSGTFSS------SVGN--LTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLS   94 (203)
Q Consensus        24 ~~~~~~~~l~~L~~L~-l~~~~~~~~~~~~~~~~------~l~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~   94 (203)
                      ..|..++.+.+|+.|+ ++.|.     ... ++.      .+..  ...|+.|++++|.++ .+|. ++.+++|+.|+++
T Consensus       400 ~~~~~l~~l~~L~~L~~l~~n~-----~~~-L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls  471 (567)
T 1dce_A          400 YEKETLQYFSTLKAVDPMRAAY-----LDD-LRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLS  471 (567)
T ss_dssp             GHHHHHHHHHHHHHHCGGGHHH-----HHH-HHHHHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC-GGGGTTCCEEECC
T ss_pred             CCHHHHHHHHhcccCcchhhcc-----cch-hhhhhhhcccccccCccCceEEEecCCCCC-CCcC-ccccccCcEeecC
Confidence            4455667778888887 45442     110 000      0110  125899999999998 4676 9999999999999


Q ss_pred             CCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCcccccc-CCCC
Q 037699           95 HSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNV-SPDW  173 (203)
Q Consensus        95 ~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~-~~~l  173 (203)
                      +|.+.. .|..+.                  .+++|+.|++++|.+++ +|  .++.+++|+.|++++|.+++.. |..+
T Consensus       472 ~N~l~~-lp~~~~------------------~l~~L~~L~Ls~N~l~~-lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l  529 (567)
T 1dce_A          472 HNRLRA-LPPALA------------------ALRCLEVLQASDNALEN-VD--GVANLPRLQELLLCNNRLQQSAAIQPL  529 (567)
T ss_dssp             SSCCCC-CCGGGG------------------GCTTCCEEECCSSCCCC-CG--GGTTCSSCCEEECCSSCCCSSSTTGGG
T ss_pred             cccccc-cchhhh------------------cCCCCCEEECCCCCCCC-Cc--ccCCCCCCcEEECCCCCCCCCCCcHHH
Confidence            999884 344443                  68899999999999974 55  6889999999999999999776 8889


Q ss_pred             CCCCCccEEEcCCCCCC
Q 037699          174 IPPFQLKELNLESCNLV  190 (203)
Q Consensus       174 ~~~~~L~~L~l~~n~l~  190 (203)
                      ..+++|+.|+|++|.++
T Consensus       530 ~~l~~L~~L~L~~N~l~  546 (567)
T 1dce_A          530 VSCPRLVLLNLQGNSLC  546 (567)
T ss_dssp             GGCTTCCEEECTTSGGG
T ss_pred             hcCCCCCEEEecCCcCC
Confidence            99999999999999993

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.44  E-value=1.4e-12  Score=88.72  Aligned_cols=105  Identities=20%  Similarity=0.251  Sum_probs=88.1

Q ss_pred             ccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCccE
Q 037699           11 LVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRS   90 (203)
Q Consensus        11 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~   90 (203)
                      -+.++++++.++ .+|..+.  .+|++|++++|.     +.+..|..+..+++|++|++++|.+++..+..|..+++|++
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~-----l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~   85 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQ-----ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQ   85 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSC-----CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCC-----ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhE
Confidence            468999999987 6676654  889999999997     77777888999999999999999999655556789999999


Q ss_pred             EEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccc
Q 037699           91 VFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLF  141 (203)
Q Consensus        91 L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~  141 (203)
                      |++++|.+....+..+.                  .+++|+.|++++|.+.
T Consensus        86 L~L~~N~l~~l~~~~~~------------------~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           86 LDLNDNHLKSIPRGAFD------------------NLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             EECCSSCCCCCCTTTTT------------------TCTTCSEEECCSSCBC
T ss_pred             EECCCCccceeCHHHhc------------------cccCCCEEEeCCCCcc
Confidence            99999999876554444                  6789999999999885

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.44  E-value=4e-15  Score=103.53  Aligned_cols=133  Identities=23%  Similarity=0.363  Sum_probs=107.1

Q ss_pred             ccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhh
Q 037699            4 VFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFG   83 (203)
Q Consensus         4 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~   83 (203)
                      .+..+++|+.|++++|.+++ +| .+..+++|++|++++|.     +. .+|..+..+++|++|++++|.+++ +| .+.
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~-----l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~  112 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNL-----IK-KIENLDAVADTLEELWISYNQIAS-LS-GIE  112 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEE-----EC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHH
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCC-----cc-cccchhhcCCcCCEEECcCCcCCc-CC-ccc
Confidence            56667799999999999985 66 88899999999999996     44 467777777899999999999984 55 688


Q ss_pred             ccCCccEEEccCCcCCcchh-hhhhhccccccCCccccccccccCCCCCEEEccCCccccccch---------hhhccCC
Q 037699           84 RLCKLRSVFLSHSNMNQEIS-KILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFE---------IHFAKLS  153 (203)
Q Consensus        84 ~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~---------~~l~~~~  153 (203)
                      .+++|++|++++|.+..... ..+.                  .+++|+.|++++|.+.+..+.         ..+..++
T Consensus       113 ~l~~L~~L~l~~N~i~~~~~~~~l~------------------~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~  174 (198)
T 1ds9_A          113 KLVNLRVLYMSNNKITNWGEIDKLA------------------ALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP  174 (198)
T ss_dssp             HHHHSSEEEESEEECCCHHHHHHHT------------------TTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCS
T ss_pred             cCCCCCEEECCCCcCCchhHHHHHh------------------cCCCCCEEEecCCccccccccccchHHHHHHHHHhCC
Confidence            99999999999999886443 2333                  678999999999998654322         2367899


Q ss_pred             CccEEEccCCccc
Q 037699          154 KLKYFDVSQNSLT  166 (203)
Q Consensus       154 ~L~~L~l~~n~~~  166 (203)
                      +|+.||  ++.++
T Consensus       175 ~L~~Ld--~~~i~  185 (198)
T 1ds9_A          175 NLKKLD--GMPVD  185 (198)
T ss_dssp             SCSEEC--CGGGT
T ss_pred             CcEEEC--CcccC
Confidence            999987  66665

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.42  E-value=9.7e-15  Score=117.20  Aligned_cols=70  Identities=6%  Similarity=-0.132  Sum_probs=50.6

Q ss_pred             cCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCC-CCCCCCCccEEEcCCCCCCCCCCc
Q 037699          126 QLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSP-DWIPPFQLKELNLESCNLVGNRFP  195 (203)
Q Consensus       126 ~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~-~l~~~~~L~~L~l~~n~l~~~~~p  195 (203)
                      .+++|+.|++++|.+++......+..+++|+.|++++|.++..... ....+++|++|++++|++++..+.
T Consensus       461 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~  531 (592)
T 3ogk_B          461 YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQD  531 (592)
T ss_dssp             SCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTT
T ss_pred             hCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHH
Confidence            3678888998888886544343567788999999999987644222 234578899999999998655443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.39  E-value=3.2e-14  Score=114.19  Aligned_cols=62  Identities=11%  Similarity=0.029  Sum_probs=39.5

Q ss_pred             cCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCC-CCCCccEEEcCCC
Q 037699          126 QLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWI-PPFQLKELNLESC  187 (203)
Q Consensus       126 ~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~-~~~~L~~L~l~~n  187 (203)
                      .+++|+.|++++|.+++.........+++|+.|++++|+++......+. .++.+....+..+
T Consensus       486 ~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          486 GCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             CCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             cCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            5677888888888875443333455678888888888887755433332 4555555555443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.35  E-value=1.3e-11  Score=92.24  Aligned_cols=155  Identities=14%  Similarity=0.134  Sum_probs=104.1

Q ss_pred             CCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEcccccc-------C-----
Q 037699            8 SDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNL-------E-----   75 (203)
Q Consensus         8 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-------~-----   75 (203)
                      +.+|+.+++.+ .++.....+|..+.+|+.+++.+|.     +....+..|..+.++..+.......       .     
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~-----i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~  173 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKT-----APNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI  173 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSS-----CCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCC-----ccccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence            67888888888 6765666778888889988888886     5566666666666666665443111       0     


Q ss_pred             --------------ccchhh---------------------------h-hccCCccEEEccCCcCCcchhhhhhhccccc
Q 037699           76 --------------GKIATS---------------------------F-GRLCKLRSVFLSHSNMNQEISKILNIFSTCI  113 (203)
Q Consensus        76 --------------~~~~~~---------------------------~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~  113 (203)
                                    +.++..                           + ..+++|+.+++.+|.+.......+.      
T Consensus       174 ~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~------  247 (329)
T 3sb4_A          174 EGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFA------  247 (329)
T ss_dssp             ESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTT------
T ss_pred             cccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhh------
Confidence                          000000                           0 1255666677666666554444443      


Q ss_pred             cCCccccccccccCCCCCEEEccCCccccccchhhhccCCCcc-EEEccCCccccccCCCCCCCCCccEEEcCCCCC
Q 037699          114 LDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLK-YFDVSQNSLTLNVSPDWIPPFQLKELNLESCNL  189 (203)
Q Consensus       114 ~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~-~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l  189 (203)
                                  .+.+|+.+++..| + ..++..+|.++.+|+ .+++.. .++......+..+++|+.+++.+|.+
T Consensus       248 ------------~~~~L~~l~l~~n-i-~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i  309 (329)
T 3sb4_A          248 ------------QKKYLLKIKLPHN-L-KTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKI  309 (329)
T ss_dssp             ------------TCTTCCEEECCTT-C-CEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCC
T ss_pred             ------------CCCCCCEEECCcc-c-ceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCcc
Confidence                        6778888888887 5 356666788888888 888887 56655567788888899999888877

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.32  E-value=9.2e-12  Score=93.71  Aligned_cols=92  Identities=22%  Similarity=0.194  Sum_probs=45.7

Q ss_pred             cccccCCCCCCCEEEccc-cccCccchhhhhccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCE
Q 037699           54 FSSSVGNLTSIQTLDLSF-NNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDS  132 (203)
Q Consensus        54 ~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~  132 (203)
                      +|. +..+.+|++|++++ |.+++..+..|..+++|++|++++|.+.+..+..+.                  .+++|+.
T Consensus        24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~------------------~l~~L~~   84 (347)
T 2ifg_A           24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH------------------FTPRLSR   84 (347)
T ss_dssp             TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGG------------------SCSCCCE
T ss_pred             cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhc------------------CCcCCCE
Confidence            444 55555666666653 555544444555555555555555555544443333                  3445555


Q ss_pred             EEccCCccccccchhhhccCCCccEEEccCCccc
Q 037699          133 VNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT  166 (203)
Q Consensus       133 L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~  166 (203)
                      |+|++|.+. .++...+..++ |+.|++.+|.+.
T Consensus        85 L~l~~N~l~-~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           85 LNLSFNALE-SLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             EECCSSCCS-CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             EeCCCCccc-eeCHHHcccCC-ceEEEeeCCCcc
Confidence            555555553 23322333333 555555555444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.30  E-value=1.2e-11  Score=93.12  Aligned_cols=104  Identities=19%  Similarity=0.164  Sum_probs=85.9

Q ss_pred             cEEecCCC-ccCCCCCccccCCCCccEEeCCC-CcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCcc
Q 037699           12 VFLDLSLN-NFQGPIPRGLGNLTSLRYLDLSA-NISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLR   89 (203)
Q Consensus        12 ~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~   89 (203)
                      ..++++++ .++ .+|. +..+.+|++|++++ |.     +....+..+..+++|++|++++|.+++..+..|..+++|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~-----l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~   83 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQH-----LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS   83 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSS-----CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCC-----CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCC
Confidence            45788888 787 5777 99999999999996 86     7777778899999999999999999977788899999999


Q ss_pred             EEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccc
Q 037699           90 SVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLF  141 (203)
Q Consensus        90 ~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~  141 (203)
                      +|++++|.+....+..+.                  .++ |+.|++.+|.+.
T Consensus        84 ~L~l~~N~l~~~~~~~~~------------------~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           84 RLNLSFNALESLSWKTVQ------------------GLS-LQELVLSGNPLH  116 (347)
T ss_dssp             EEECCSSCCSCCCSTTTC------------------SCC-CCEEECCSSCCC
T ss_pred             EEeCCCCccceeCHHHcc------------------cCC-ceEEEeeCCCcc
Confidence            999999998865554443                  233 899999999885

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.26  E-value=1.1e-13  Score=111.11  Aligned_cols=63  Identities=6%  Similarity=0.058  Sum_probs=45.1

Q ss_pred             CCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCC-CCCCCCCccEEEcCCCCC
Q 037699          127 LSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSP-DWIPPFQLKELNLESCNL  189 (203)
Q Consensus       127 ~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~-~l~~~~~L~~L~l~~n~l  189 (203)
                      +++|+.|++++|.+++.........+++|+.|++++|.+++.... ....+++|++|++++|.+
T Consensus       455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            677888888888876544443336688888888888888644333 334577888888888887

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.23  E-value=1.5e-10  Score=86.55  Aligned_cols=161  Identities=14%  Similarity=0.165  Sum_probs=119.6

Q ss_pred             cccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccc--cccc-------------------ccc-------
Q 037699            3 WVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISIL--QYLS-------------------GTF-------   54 (203)
Q Consensus         3 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~-------------------~~~-------   54 (203)
                      ..|..+++|+.+++.+|.+....+.+|..+.++..+.........  ..+.                   +.+       
T Consensus       118 ~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~  197 (329)
T 3sb4_A          118 AAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKA  197 (329)
T ss_dssp             TTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHT
T ss_pred             HHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhc
Confidence            367788899999999999876777888888888877766531000  0000                   000       


Q ss_pred             ---ccc-----------------c-CCCCCCCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhhhhccccc
Q 037699           55 ---SSS-----------------V-GNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCI  113 (203)
Q Consensus        55 ---~~~-----------------l-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~  113 (203)
                         +..                 + ..+++|+.++++.|.++......|..+.+|+.+++..| +.......+.      
T Consensus       198 ~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~------  270 (329)
T 3sb4_A          198 GLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFS------  270 (329)
T ss_dssp             TCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT------
T ss_pred             ccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhh------
Confidence               000                 0 02679999999999998555667999999999999987 6555555554      


Q ss_pred             cCCccccccccccCCCCC-EEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEc
Q 037699          114 LDGLEVLEMTEWQLSSLD-SVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNL  184 (203)
Q Consensus       114 ~~~l~~l~~~~~~~~~L~-~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l  184 (203)
                                  .+.+|+ .+.+.. .+. .++..+|.+|++|+.++++.|.++......+..+++|+.++.
T Consensus       271 ------------~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          271 ------------NCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             ------------TCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             ------------CChhccEEEEEcc-cce-EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence                        678899 999988 553 566668999999999999999998777778999999998863

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.22  E-value=3.3e-12  Score=96.99  Aligned_cols=161  Identities=17%  Similarity=0.108  Sum_probs=108.2

Q ss_pred             CcccEEecCCCccCCCCCccc-cCCCCccEEeCCCCccccccccccccccc-----CCCCCCCEEEccccccCc----cc
Q 037699            9 DHLVFLDLSLNNFQGPIPRGL-GNLTSLRYLDLSANISILQYLSGTFSSSV-----GNLTSIQTLDLSFNNLEG----KI   78 (203)
Q Consensus         9 ~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~----~~   78 (203)
                      ++|+.|++++|.++......+ ..+.+|++|++++|.     +.+.....+     ...++|++|++++|.++.    .+
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-----l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l  175 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-----LGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVL  175 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-----CCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-----CCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHH
Confidence            589999999999874333222 345789999999996     544333332     356789999999999974    34


Q ss_pred             hhhhhccCCccEEEccCCcCCcchhhhhh-hccccccCCccccccccccCCCCCEEEccCCccccccch---hhhccCCC
Q 037699           79 ATSFGRLCKLRSVFLSHSNMNQEISKILN-IFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFE---IHFAKLSK  154 (203)
Q Consensus        79 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~---~~l~~~~~  154 (203)
                      +..+..+++|++|++++|.+.+.....+. .+.               ..++|+.|++++|.+++....   ..+...+.
T Consensus       176 ~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~---------------~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~  240 (372)
T 3un9_A          176 MEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD---------------RNRQLQELNVAYNGAGDTAALALARAAREHPS  240 (372)
T ss_dssp             HHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGG---------------GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSS
T ss_pred             HHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHh---------------cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCC
Confidence            45567789999999999998765443322 111               457899999999999653222   23456789


Q ss_pred             ccEEEccCCccccccCCCCC---CCC--CccEEE--cCCCCC
Q 037699          155 LKYFDVSQNSLTLNVSPDWI---PPF--QLKELN--LESCNL  189 (203)
Q Consensus       155 L~~L~l~~n~~~~~~~~~l~---~~~--~L~~L~--l~~n~l  189 (203)
                      |+.|++++|.++......+.   ...  .++.+.  +..+.+
T Consensus       241 L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~  282 (372)
T 3un9_A          241 LELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV  282 (372)
T ss_dssp             CCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----C
T ss_pred             CCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCcc
Confidence            99999999999854332222   122  267776  666655

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.21  E-value=7.1e-13  Score=106.37  Aligned_cols=37  Identities=14%  Similarity=-0.014  Sum_probs=17.2

Q ss_pred             cCCCccEEEccCCccccccC-CCCCCCCCccEEEcCCC
Q 037699          151 KLSKLKYFDVSQNSLTLNVS-PDWIPPFQLKELNLESC  187 (203)
Q Consensus       151 ~~~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n  187 (203)
                      .+++|+.|++++|.++.... ..+..+++|++|++++|
T Consensus       287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~  324 (594)
T 2p1m_B          287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY  324 (594)
T ss_dssp             HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred             hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence            34555555555555443211 11234455555555554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.06  E-value=2.8e-10  Score=86.01  Aligned_cols=163  Identities=14%  Similarity=0.133  Sum_probs=102.3

Q ss_pred             cCCcccEEecCCCccC---------CCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCcc
Q 037699            7 LSDHLVFLDLSLNNFQ---------GPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGK   77 (203)
Q Consensus         7 ~~~~L~~L~l~~~~~~---------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~   77 (203)
                      .+++|+.|.+.+....         ..+...+..+++|+.|.++++.     .. .++. + .+++|++|++..|.+...
T Consensus       137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~-----~l-~l~~-~-~~~~L~~L~L~~~~l~~~  208 (362)
T 2ra8_A          137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN-----NL-SIGK-K-PRPNLKSLEIISGGLPDS  208 (362)
T ss_dssp             HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB-----TC-BCCS-C-BCTTCSEEEEECSBCCHH
T ss_pred             hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC-----Cc-eecc-c-cCCCCcEEEEecCCCChH
Confidence            3458899988765321         1233445677899999998873     12 2233 3 378899999998888754


Q ss_pred             chhhhh--ccCCccEEEccCC--cCCcc-hhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhh--c
Q 037699           78 IATSFG--RLCKLRSVFLSHS--NMNQE-ISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHF--A  150 (203)
Q Consensus        78 ~~~~~~--~l~~L~~L~l~~n--~~~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l--~  150 (203)
                      ....+.  .+++|++|+++.+  ..... ....+...            +....+++|+.|++.+|.+.+......+  .
T Consensus       209 ~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~------------l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~  276 (362)
T 2ra8_A          209 VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL------------FSKDRFPNLKWLGIVDAEEQNVVVEMFLESD  276 (362)
T ss_dssp             HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG------------SCTTTCTTCCEEEEESCTTHHHHHHHHHHCS
T ss_pred             HHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH------------HhcCCCCCcCEEeCCCCCCchHHHHHHHhCc
Confidence            444444  6899999988532  11110 01001000            0011468899999998888643332122  2


Q ss_pred             cCCCccEEEccCCccccc----cCCCCCCCCCccEEEcCCCCC
Q 037699          151 KLSKLKYFDVSQNSLTLN----VSPDWIPPFQLKELNLESCNL  189 (203)
Q Consensus       151 ~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l  189 (203)
                      .+++|++|+++.|.++..    ++..+..+++|+.|++++|.+
T Consensus       277 ~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred             cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence            577899999999988753    233334567899999999888

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.05  E-value=7.4e-09  Score=79.38  Aligned_cols=60  Identities=13%  Similarity=0.115  Sum_probs=38.0

Q ss_pred             cCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCC
Q 037699          126 QLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNL  189 (203)
Q Consensus       126 ~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l  189 (203)
                      .+++|+.+.+.. .+. .+...+|.+|.+|+.+.+..+ ++......+..+ +|+.+.+.+|.+
T Consensus       298 ~c~~L~~l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~  357 (401)
T 4fdw_A          298 GCPKLARFEIPE-SIR-ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP  357 (401)
T ss_dssp             TCTTCCEECCCT-TCC-EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred             CCccCCeEEeCC-ceE-EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence            456677777763 342 455556777777777777544 443444566666 777777777765

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.92  E-value=2e-09  Score=73.78  Aligned_cols=121  Identities=14%  Similarity=0.089  Sum_probs=59.5

Q ss_pred             ccccCCCCCCCEEEcccc-ccCcc----chhhhhccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCC
Q 037699           55 SSSVGNLTSIQTLDLSFN-NLEGK----IATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSS  129 (203)
Q Consensus        55 ~~~l~~~~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~  129 (203)
                      ...+...+.|++|++++| .+...    +...+...+.|++|++++|.+.......+.....              ..++
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~--------------~n~~   94 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLK--------------VNNT   94 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHH--------------HCSS
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHH--------------hCCC
Confidence            334445555666666665 55422    2333444455666666666655433322211000              2345


Q ss_pred             CCEEEccCCccccccc---hhhhccCCCccEEEc--cCCcccccc----CCCCCCCCCccEEEcCCCCC
Q 037699          130 LDSVNLSNNTLFGSLF---EIHFAKLSKLKYFDV--SQNSLTLNV----SPDWIPPFQLKELNLESCNL  189 (203)
Q Consensus       130 L~~L~l~~n~l~~~~~---~~~l~~~~~L~~L~l--~~n~~~~~~----~~~l~~~~~L~~L~l~~n~l  189 (203)
                      |+.|++++|.+.+...   ...+...+.|+.|++  ++|.++...    ...+...++|++|+|++|.+
T Consensus        95 L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A           95 LKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             CCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             cCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence            6666666666643211   113444556666666  556665321    22233345666666666665

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.90  E-value=8.5e-10  Score=75.66  Aligned_cols=126  Identities=12%  Similarity=-0.009  Sum_probs=90.9

Q ss_pred             ccccCCCCccEEeCCCC-cccccccccccccccCCCCCCCEEEccccccCcc----chhhhhccCCccEEEccCCcCCcc
Q 037699           27 RGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGK----IATSFGRLCKLRSVFLSHSNMNQE  101 (203)
Q Consensus        27 ~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~  101 (203)
                      ..+...+.|++|++++| .+.. .....+...+...++|++|++++|.+...    +...+...+.|++|++++|.+...
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~-~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPV-PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCH-HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCH-HHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            34567889999999998 6211 11233556677788999999999999843    345566678999999999999876


Q ss_pred             hhhhhhhccccccCCccccccccccCCCCCEEEc--cCCccccccc---hhhhccCCCccEEEccCCcccc
Q 037699          102 ISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNL--SNNTLFGSLF---EIHFAKLSKLKYFDVSQNSLTL  167 (203)
Q Consensus       102 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l--~~n~l~~~~~---~~~l~~~~~L~~L~l~~n~~~~  167 (203)
                      ....+.....              ..++|+.|++  ++|.+.+...   ...+...+.|+.|++++|.+..
T Consensus       109 g~~~l~~~L~--------------~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          109 GILALVEALQ--------------SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHHHHHHGGG--------------GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHHHHHH--------------hCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence            5444321110              4578999999  8899964432   2245667899999999998863

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.87  E-value=6.5e-08  Score=74.16  Aligned_cols=61  Identities=13%  Similarity=0.111  Sum_probs=40.1

Q ss_pred             cCCCCCEEEccCCccc----cccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCC
Q 037699          126 QLSSLDSVNLSNNTLF----GSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESC  187 (203)
Q Consensus       126 ~~~~L~~L~l~~n~l~----~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n  187 (203)
                      .+++|+.+.+.++...    ..++..+|.+|++|+.+.+.. .++......+..+.+|+.+.|..+
T Consensus       269 ~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          269 YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT
T ss_pred             CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc
Confidence            5667777777776542    124445677778888888774 355444556777778888887554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.77  E-value=2.7e-09  Score=80.59  Aligned_cols=158  Identities=15%  Similarity=0.185  Sum_probs=101.5

Q ss_pred             ccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCccccccccccccccc--CCCCCCCEEEcccc--ccCc-----
Q 037699            6 GLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSV--GNLTSIQTLDLSFN--NLEG-----   76 (203)
Q Consensus         6 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~--~~~~-----   76 (203)
                      ..+++|+.|.++++.-. .++. + .+++|++|++..+.     +.......+  ..+++|++|+++.+  ...+     
T Consensus       169 ~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~-----l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~  240 (362)
T 2ra8_A          169 DAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGG-----LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN  240 (362)
T ss_dssp             HTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSB-----CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred             hcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCC-----CChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence            45679999999988311 2333 3 38899999999885     433322333  36889999998632  2111     


Q ss_pred             cchhhh--hccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchh---hhcc
Q 037699           77 KIATSF--GRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEI---HFAK  151 (203)
Q Consensus        77 ~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~---~l~~  151 (203)
                      .+...+  ..+++|++|++.+|.+.......+...               ..+++|+.|+++.|.+.+.....   .+..
T Consensus       241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a---------------~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~  305 (362)
T 2ra8_A          241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES---------------DILPQLETMDISAGVLTDEGARLLLDHVDK  305 (362)
T ss_dssp             GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC---------------SSGGGCSEEECCSSCCBHHHHHHHHTTHHH
T ss_pred             HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC---------------ccCCCCCEEECCCCCCChHHHHHHHhhccc
Confidence            111222  357899999999998875443333210               04678999999999986543221   2356


Q ss_pred             CCCccEEEccCCccccccCCCCCC-CCCccEEEcCCCC
Q 037699          152 LSKLKYFDVSQNSLTLNVSPDWIP-PFQLKELNLESCN  188 (203)
Q Consensus       152 ~~~L~~L~l~~n~~~~~~~~~l~~-~~~L~~L~l~~n~  188 (203)
                      +++|+.|++++|.++......+.. +  ..+++++.+.
T Consensus       306 l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          306 IKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             CCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            789999999999988543333322 2  3567888775

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.70  E-value=9.2e-09  Score=69.35  Aligned_cols=85  Identities=13%  Similarity=0.128  Sum_probs=63.5

Q ss_pred             cccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCC----CCCCEEEccccc-cCccchhhhhc
Q 037699           10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNL----TSIQTLDLSFNN-LEGKIATSFGR   84 (203)
Q Consensus        10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~----~~L~~L~l~~~~-~~~~~~~~~~~   84 (203)
                      +|+.||+++|.++...-..+..+++|++|++++|.    .+++..-..+..+    ++|++|++++|. +++..-..+..
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~----~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~  137 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH----YIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH  137 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT----TCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC----ccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc
Confidence            78999999998887666677888999999999885    2444333444443    368999999885 77655566778


Q ss_pred             cCCccEEEccCCcC
Q 037699           85 LCKLRSVFLSHSNM   98 (203)
Q Consensus        85 l~~L~~L~l~~n~~   98 (203)
                      +++|++|+++++.-
T Consensus       138 ~~~L~~L~L~~c~~  151 (176)
T 3e4g_A          138 FRNLKYLFLSDLPG  151 (176)
T ss_dssp             CTTCCEEEEESCTT
T ss_pred             CCCCCEEECCCCCC
Confidence            89999999988753

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.60  E-value=8e-08  Score=64.75  Aligned_cols=88  Identities=13%  Similarity=0.093  Sum_probs=45.7

Q ss_pred             CCCCEEEccccccCccchhhhhccCCccEEEccCCc-CCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCc-
Q 037699           62 TSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSN-MNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNT-  139 (203)
Q Consensus        62 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~-  139 (203)
                      ..|+.|++++|.+++..-..+..+++|++|++++|. +++.....++....              ..++|++|++++|. 
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~--------------~~~~L~~L~Ls~C~~  126 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLEN--------------LQKSMLEMEIISCGN  126 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHH--------------HHHHCCEEEEESCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhccc--------------ccCCCCEEEcCCCCc
Confidence            356666666666664444445566666666666664 44333333221000              01346666666653 


Q ss_pred             cccccchhhhccCCCccEEEccCCc
Q 037699          140 LFGSLFEIHFAKLSKLKYFDVSQNS  164 (203)
Q Consensus       140 l~~~~~~~~l~~~~~L~~L~l~~n~  164 (203)
                      +++.... .+..+++|+.|++++|.
T Consensus       127 ITD~Gl~-~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          127 VTDKGII-ALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             CCHHHHH-HGGGCTTCCEEEEESCT
T ss_pred             CCHHHHH-HHhcCCCCCEEECCCCC
Confidence            5443333 45556666666666663

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.38  E-value=3.3e-07  Score=66.10  Aligned_cols=16  Identities=25%  Similarity=0.316  Sum_probs=7.6

Q ss_pred             cCCccEEEccCCcCCc
Q 037699           85 LCKLRSVFLSHSNMNQ  100 (203)
Q Consensus        85 l~~L~~L~l~~n~~~~  100 (203)
                      +++|+.|++++|.+..
T Consensus       169 l~~L~~L~Ls~N~l~~  184 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYR  184 (267)
T ss_dssp             CTTCCEEECTTSCCCC
T ss_pred             CCCCCEEECCCCCCCC
Confidence            4445555555554443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.33  E-value=7e-07  Score=64.43  Aligned_cols=62  Identities=29%  Similarity=0.404  Sum_probs=29.2

Q ss_pred             CCCCccEEeCCCCccccccccc--ccccccCCCCCCCEEEccccccCccchhhhhccC--CccEEEccCCcCC
Q 037699           31 NLTSLRYLDLSANISILQYLSG--TFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLC--KLRSVFLSHSNMN   99 (203)
Q Consensus        31 ~l~~L~~L~l~~~~~~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~--~L~~L~l~~n~~~   99 (203)
                      .+++|+.|++++|.     +..  .++..+..+++|+.|++++|.+.+.  ..+..+.  +|++|++.+|++.
T Consensus       168 ~l~~L~~L~Ls~N~-----l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~  233 (267)
T 3rw6_A          168 NIPELLSLNLSNNR-----LYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLC  233 (267)
T ss_dssp             HCTTCCEEECTTSC-----CCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTG
T ss_pred             hCCCCCEEECCCCC-----CCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCc
Confidence            34555555555554     332  2233344455555555555555422  1222222  5555555555554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.06  E-value=1.2e-05  Score=55.11  Aligned_cols=48  Identities=13%  Similarity=0.162  Sum_probs=22.6

Q ss_pred             ccccCCCCCCCEEEccccccCcc----chhhhhccCCccEEEccCCcCCcch
Q 037699           55 SSSVGNLTSIQTLDLSFNNLEGK----IATSFGRLCKLRSVFLSHSNMNQEI  102 (203)
Q Consensus        55 ~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~  102 (203)
                      .+.+.....|+.|++++|.+.+.    +...+.....|++|++..|.+....
T Consensus        63 a~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G  114 (197)
T 1pgv_A           63 IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL  114 (197)
T ss_dssp             HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred             HHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence            33444445555555555555422    2233334445555555555554433

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.93  E-value=0.00021  Score=54.53  Aligned_cols=59  Identities=17%  Similarity=0.150  Sum_probs=44.4

Q ss_pred             cCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCC
Q 037699          126 QLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESC  187 (203)
Q Consensus       126 ~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n  187 (203)
                      .+.+|+.+.+..+ + ..+...+|.+|.+|+.+.+..+ ++......+..+.+|+.+.+..+
T Consensus       318 ~c~~L~~i~lp~~-v-~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          318 SCTSLVSIDLPYL-V-EEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TCTTCCEECCCTT-C-CEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             CCCCCCEEEeCCc-c-cEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            5678888888654 4 3555568889999999998776 55445567888899999998754

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.88  E-value=0.0004  Score=52.54  Aligned_cols=59  Identities=17%  Similarity=0.099  Sum_probs=36.7

Q ss_pred             cCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCC
Q 037699          126 QLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLES  186 (203)
Q Consensus       126 ~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~  186 (203)
                      .+.+|+.+.+..+.+. .+...+|.+|.+|+.+.+..+ ++......+..+.+|+.+.+..
T Consensus       284 ~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          284 GCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             TCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             cccccccccccccccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            5667777777766653 455556777777777777544 3333344566666676666543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.82  E-value=0.00035  Score=53.29  Aligned_cols=132  Identities=11%  Similarity=0.183  Sum_probs=70.0

Q ss_pred             ccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhh
Q 037699           27 RGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKIL  106 (203)
Q Consensus        27 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  106 (203)
                      .+|..+..|+.+.+..+      ........+..+..|+.+.+.. .++..-...|..+.+|+.+.+..+ +......++
T Consensus       259 ~aF~~c~~L~~i~lp~~------~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF  330 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDS------VVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAF  330 (394)
T ss_dssp             TTTTTCSSCCEEECCTT------CCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTT
T ss_pred             ceeeecccccEEecccc------cceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHh
Confidence            34555666666666554      3444455566666666666642 233233345666666766666542 222222222


Q ss_pred             hhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCC
Q 037699          107 NIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLES  186 (203)
Q Consensus       107 ~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~  186 (203)
                      .                  .+.+|+.+.+..+ + ..+...+|.+|.+|+.+++.++....   ..+..+..|+.+.+..
T Consensus       331 ~------------------~C~~L~~i~ip~s-v-~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~  387 (394)
T 4gt6_A          331 A------------------GCEQLERIAIPSS-V-TKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAP  387 (394)
T ss_dssp             T------------------TCTTCCEEEECTT-C-CBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-------
T ss_pred             h------------------CCCCCCEEEECcc-c-CEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCC
Confidence            2                  5677888888544 3 25555578888888888888775442   2455566777777766


Q ss_pred             CCC
Q 037699          187 CNL  189 (203)
Q Consensus       187 n~l  189 (203)
                      +.+
T Consensus       388 ~~~  390 (394)
T 4gt6_A          388 GSI  390 (394)
T ss_dssp             ---
T ss_pred             CCE
Confidence            544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.81  E-value=1.5e-05  Score=54.70  Aligned_cols=122  Identities=10%  Similarity=0.071  Sum_probs=83.9

Q ss_pred             cccccCCCCCCCEEEcccc-ccCc----cchhhhhccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCC
Q 037699           54 FSSSVGNLTSIQTLDLSFN-NLEG----KIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLS  128 (203)
Q Consensus        54 ~~~~l~~~~~L~~L~l~~~-~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~  128 (203)
                      +...+..-+.|+.|+++++ .+..    .+...+.....|+.|++++|.+.+.....++..-.              .-+
T Consensus        33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~--------------~N~   98 (197)
T 1pgv_A           33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIE--------------TSP   98 (197)
T ss_dssp             HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHH--------------HCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHh--------------cCC
Confidence            4445566778999999985 7763    34556677788999999999998765544432111              457


Q ss_pred             CCCEEEccCCccccccch---hhhccCCCccEEEccCC---cccc----ccCCCCCCCCCccEEEcCCCCC
Q 037699          129 SLDSVNLSNNTLFGSLFE---IHFAKLSKLKYFDVSQN---SLTL----NVSPDWIPPFQLKELNLESCNL  189 (203)
Q Consensus       129 ~L~~L~l~~n~l~~~~~~---~~l~~~~~L~~L~l~~n---~~~~----~~~~~l~~~~~L~~L~l~~n~l  189 (203)
                      .|+.|+++.|.+.+....   ..+..-+.|+.|+|+++   .+..    .+.+.+..-++|+.|+++.|.+
T Consensus        99 tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A           99 SLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             SCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             ccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            899999999999654332   23445567999999865   3332    1334455567899999987765

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.78  E-value=0.00047  Score=52.16  Aligned_cols=139  Identities=15%  Similarity=0.149  Sum_probs=80.3

Q ss_pred             CcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCc
Q 037699            9 DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL   88 (203)
Q Consensus         9 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L   88 (203)
                      .+++.+.+..+ +......++..+..|+.+.+..+      +.......+..+.+++.+.+..+ +.......|..+.+|
T Consensus       217 ~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~------v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L  288 (379)
T 4h09_A          217 KNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN------VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL  288 (379)
T ss_dssp             SSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT------CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred             cccceeeeccc-eeEEccccccCCccceEEEcCCC------ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence            34444444433 22123344555666666666554      44444555666667777766543 332333456667777


Q ss_pred             cEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccc
Q 037699           89 RSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLN  168 (203)
Q Consensus        89 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~  168 (203)
                      +.+.+..+.+.......+.                  .+.+|+.+.+..+ + ..+...+|.+|.+|+.+.+..+ ++..
T Consensus       289 ~~i~l~~~~i~~I~~~aF~------------------~c~~L~~i~lp~~-l-~~I~~~aF~~C~~L~~i~ip~~-v~~I  347 (379)
T 4h09_A          289 TKVVMDNSAIETLEPRVFM------------------DCVKLSSVTLPTA-L-KTIQVYAFKNCKALSTISYPKS-ITLI  347 (379)
T ss_dssp             CEEEECCTTCCEECTTTTT------------------TCTTCCEEECCTT-C-CEECTTTTTTCTTCCCCCCCTT-CCEE
T ss_pred             ccccccccccceehhhhhc------------------CCCCCCEEEcCcc-c-cEEHHHHhhCCCCCCEEEECCc-cCEE
Confidence            7777766555443333333                  6788999998654 4 3555668889999999888654 4422


Q ss_pred             cCCCCCCC
Q 037699          169 VSPDWIPP  176 (203)
Q Consensus       169 ~~~~l~~~  176 (203)
                      ....+..+
T Consensus       348 ~~~aF~~c  355 (379)
T 4h09_A          348 ESGAFEGS  355 (379)
T ss_dssp             CTTTTTTS
T ss_pred             chhHhhCC
Confidence            33445444

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.74  E-value=0.00032  Score=53.45  Aligned_cols=131  Identities=13%  Similarity=0.170  Sum_probs=88.2

Q ss_pred             ccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhh
Q 037699            4 VFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFG   83 (203)
Q Consensus         4 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~   83 (203)
                      .|..+..|+.+.+..+... ....++..+..|+.+.+...      +.......|..+.+|+.+.+..+ ++..-...|.
T Consensus       260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~------i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~  331 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSR------ITELPESVFAGCISLKSIDIPEG-ITQILDDAFA  331 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTT------CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred             eeeecccccEEecccccce-ecCcccccccccccccCCCc------ccccCceeecCCCCcCEEEeCCc-ccEehHhHhh
Confidence            4556678888888765443 45567888999999999865      66667778999999999999764 4434456788


Q ss_pred             ccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCC
Q 037699           84 RLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQN  163 (203)
Q Consensus        84 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n  163 (203)
                      .+.+|+.+.+..+ +......++.                  .+.+|+.+.+.++...  .  ..+..+..|+.+.+..+
T Consensus       332 ~C~~L~~i~ip~s-v~~I~~~aF~------------------~C~~L~~i~~~~~~~~--~--~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          332 GCEQLERIAIPSS-VTKIPESAFS------------------NCTALNNIEYSGSRSQ--W--NAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             TCTTCCEEEECTT-CCBCCGGGGT------------------TCTTCCEEEESSCHHH--H--HTCBCCCCC--------
T ss_pred             CCCCCCEEEECcc-cCEEhHhHhh------------------CCCCCCEEEECCceee--h--hhhhccCCCCEEEeCCC
Confidence            9999999998654 4444444444                  6889999999887542  1  24567788888877655


Q ss_pred             cc
Q 037699          164 SL  165 (203)
Q Consensus       164 ~~  165 (203)
                      .+
T Consensus       389 ~~  390 (394)
T 4gt6_A          389 SI  390 (394)
T ss_dssp             --
T ss_pred             CE
Confidence            43

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.61  E-value=0.00045  Score=52.65  Aligned_cols=59  Identities=7%  Similarity=0.133  Sum_probs=28.4

Q ss_pred             ccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCccEEE
Q 037699           27 RGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVF   92 (203)
Q Consensus        27 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~   92 (203)
                      .+|.++.+|+.+.+..+      +.......|..+.+|+.+++..+ ++..-...|..+.+|+.+.
T Consensus        65 ~AF~~c~~L~~i~lp~~------i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~  123 (394)
T 4fs7_A           65 AAFQGCRKVTEIKIPST------VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSIL  123 (394)
T ss_dssp             TTTTTCTTEEEEECCTT------CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCC
T ss_pred             HHhhCCCCceEEEeCCC------ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhc
Confidence            44555555666655543      44444455555555666655433 2212223344444444433

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.21  E-value=0.00072  Score=43.18  Aligned_cols=40  Identities=13%  Similarity=-0.072  Sum_probs=22.5

Q ss_pred             CccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCC
Q 037699          154 KLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNR  193 (203)
Q Consensus       154 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~  193 (203)
                      +++.|+|++|.++......+..+++|+.|+|.+|.+..+.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC   71 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDC   71 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSG
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccC
Confidence            4556666666665444444555556666666666654443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.58  E-value=0.007  Score=38.51  Aligned_cols=36  Identities=25%  Similarity=0.191  Sum_probs=18.9

Q ss_pred             CCCEEEccccccCccchhhhhccCCccEEEccCCcC
Q 037699           63 SIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNM   98 (203)
Q Consensus        63 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~   98 (203)
                      ++++|++++|.++..-+..|..+++|+.+++.+|++
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            355555555555533334455555555566555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	203
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-07
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.2 bits (121), Expect = 1e-08
 Identities = 33/193 (17%), Positives = 55/193 (28%), Gaps = 6/193 (3%)

Query: 6   GLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQ 65
            L      LDL  N           NL +L  L L         +S     +   L  ++
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILIN-----NKISKISPGAFAPLVKLE 82

Query: 66  TLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEW 125
            L LS N L+         L +LR      + + + +   LN      L    +      
Sbjct: 83  RLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 142

Query: 126 QLSSLDSVNLSNNTLFG-SLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNL 184
             +      LS   +   ++  I       L    +  N +T   +        L +L L
Sbjct: 143 NGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 185 ESCNLVGNRFPSW 197
              ++      S 
Sbjct: 203 SFNSISAVDNGSL 215

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.6 bits (117), Expect = 5e-08
 Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 11/95 (11%)

Query: 1   MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGN 60
                    +L +L L  NN     P  + +LT L+ L  + N      +S    SS+ N
Sbjct: 299 DISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANN-----KVSDV--SSLAN 349

Query: 61  LTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSH 95
           LT+I  L    N +          L ++  + L+ 
Sbjct: 350 LTNINWLSAGHNQISDLTP--LANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 6e-06
 Identities = 31/194 (15%), Positives = 66/194 (34%), Gaps = 20/194 (10%)

Query: 1   MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGN 60
              V     +L  L  + N      P G   LT+L  L L+ N             ++ +
Sbjct: 189 DISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGN-------QLKDIGTLAS 239

Query: 61  LTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMN--QEISKILNIFSTCILDGLE 118
           LT++  LDL+ N +          L KL  + L  + ++    ++ +  + +  + +   
Sbjct: 240 LTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQL 297

Query: 119 VLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPF- 177
                   L +L  + L  N +         + L+KL+    + N ++       +    
Sbjct: 298 EDISPISNLKNLTYLTLYFNNISDI---SPVSSLTKLQRLFFANNKVS---DVSSLANLT 351

Query: 178 QLKELNLESCNLVG 191
            +  L+     +  
Sbjct: 352 NINWLSAGHNQISD 365

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 31/177 (17%), Positives = 58/177 (32%), Gaps = 42/177 (23%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN-----ISILQYLSGTFSS 56
                   +L  LDL+ N      P  L  LT L  L L AN       +    + T   
Sbjct: 234 IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLE 291

Query: 57  SVGN----------LTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKIL 106
              N          L ++  L L FNN+          L KL+ +F +++          
Sbjct: 292 LNENQLEDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNK--------- 340

Query: 107 NIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQN 163
                  +  +  L      L++++ ++  +N +         A L+++    ++  
Sbjct: 341 -------VSDVSSL----ANLTNINWLSAGHNQISDL---TPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 30/182 (16%), Positives = 62/182 (34%), Gaps = 24/182 (13%)

Query: 10  HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDL 69
           +L  L L+ N  +      L +LT+L  LDL+ N         +  + +  LT +  L L
Sbjct: 220 NLDELSLNGNQLKDIGT--LASLTNLTDLDLANN-------QISNLAPLSGLTKLTELKL 270

Query: 70  SFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTE-WQLS 128
             N +      +         +  +       I   L   +   L    + +++    L+
Sbjct: 271 GANQISNISPLAGLTALTNLELNENQLEDISPI-SNLKNLTYLTLYFNNISDISPVSSLT 329

Query: 129 SLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPF----QLKELNL 184
            L  +  +NN +         A L+ + +     N ++       + P     ++ +L L
Sbjct: 330 KLQRLFFANNKVSDV---SSLANLTNINWLSAGHNQIS------DLTPLANLTRITQLGL 380

Query: 185 ES 186
             
Sbjct: 381 ND 382

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 46.3 bits (108), Expect = 7e-07
 Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 6/60 (10%)

Query: 15  DLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNL 74
           DL  N   G +P+GL  L  L  L++S N      L G      GNL        + N  
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFN-----NLCGEIPQG-GNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.7 bits (91), Expect = 1e-04
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 50  LSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNM 98
           + GT    +  L  + +L++SFNNL G+I    G L +      +++  
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 37.4 bits (85), Expect = 6e-04
 Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 2   PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN 43
           P        L  L++S NN  G IP+  GNL        + N
Sbjct: 261 PQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANN 301

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 3e-05
 Identities = 15/99 (15%), Positives = 32/99 (32%), Gaps = 7/99 (7%)

Query: 8   SDHLVFLDLSLNNFQ-GPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQT 66
           S  +  LD+             L  L   + + L     + +      SS++    ++  
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAE 59

Query: 67  LDLSFNNLEGKIATSFGRL-----CKLRSVFLSHSNMNQ 100
           L+L  N L         +      CK++ + L +  +  
Sbjct: 60  LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 2e-04
 Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 6/81 (7%)

Query: 31  NLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGR-----L 85
             + LR L L+    +      + ++++    S++ LDLS N L                
Sbjct: 367 PGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 425

Query: 86  CKLRSVFLSHSNMNQEISKIL 106
           C L  + L     ++E+   L
Sbjct: 426 CLLEQLVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (82), Expect = 0.001
 Identities = 17/93 (18%), Positives = 27/93 (29%), Gaps = 4/93 (4%)

Query: 1   MPWVFGLSDHLVFLDLSLNNFQG----PIPRGLGNLTSLRYLDLSANISILQYLSGTFSS 56
              +      L  L L+  +        +   L    SLR LDLS N      +     S
Sbjct: 361 CQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES 420

Query: 57  SVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLR 89
                  ++ L L       ++      L K +
Sbjct: 421 VRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDK 453

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 5e-05
 Identities = 35/189 (18%), Positives = 47/189 (24%), Gaps = 9/189 (4%)

Query: 6   GLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQ 65
            L      L LS N         L   T L  L+L         + GT         S  
Sbjct: 28  DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHN 87

Query: 66  TLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEW 125
            L       +   A +   +   R   L    +               L  L    +T  
Sbjct: 88  QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147

Query: 126 QLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLE 185
                 S+  +N T    L       L  L    + +NSL        IP        L 
Sbjct: 148 PKLEKLSLANNNLT---ELPAGLLNGLENLDTLLLQENSLY------TIPKGFFGSHLLP 198

Query: 186 SCNLVGNRF 194
              L GN +
Sbjct: 199 FAFLHGNPW 207

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 6e-04
 Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 5/105 (4%)

Query: 65  QTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEM-- 122
           + L L+  +L   +     +L  +  + LSH+ +      +  +    +L   +      
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 123 -TEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT 166
                L  L  + L NN L  S          +L   ++  NSL 
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 103

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (79), Expect = 0.003
 Identities = 12/39 (30%), Positives = 14/39 (35%)

Query: 3   WVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLS 41
            VF  +   V LD+S          GL NL  LR     
Sbjct: 195 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	203
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.83
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.81
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.8
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.8
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.79
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.69
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.69
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.62
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.6
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.59
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.59
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.58
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.58
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.56
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.56
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.52
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.45
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.43
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.39
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.37
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.36
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.33
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.31
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.15
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.13
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.91
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.85
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.68
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.48
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.47
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.35
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.12
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.11
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.81

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.88  E-value=1.5e-22  Score=148.93  Aligned_cols=188  Identities=24%  Similarity=0.352  Sum_probs=120.6

Q ss_pred             CCcccccCCcccEEecCC-CccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccch
Q 037699            1 MPWVFGLSDHLVFLDLSL-NNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIA   79 (203)
Q Consensus         1 ~p~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~   79 (203)
                      +|+.++.+++|++|++++ |.+++.+|..++++.+|++|++++|.     +.+..+..+..+..|+++++++|.+....|
T Consensus        68 lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~-----l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p  142 (313)
T d1ogqa_          68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-----VSGAIPDFLSQIKTLVTLDFSYNALSGTLP  142 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-----CEEECCGGGGGCTTCCEEECCSSEEESCCC
T ss_pred             CChHHhcCccccccccccccccccccccccccccccchhhhcccc-----ccccccccccchhhhcccccccccccccCc
Confidence            456666777888888876 66777778788888888888888876     666666666777777777777777776777


Q ss_pred             hhhhccCCccEEEccCCcCCcchhhhhhhccccc----c-------------CCc--cccc---------ccc--ccCCC
Q 037699           80 TSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCI----L-------------DGL--EVLE---------MTE--WQLSS  129 (203)
Q Consensus        80 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~----~-------------~~l--~~l~---------~~~--~~~~~  129 (203)
                      ..+..++.++++++++|.+.+..|..+..+....    .             ..+  ..+.         .+.  ..+++
T Consensus       143 ~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~  222 (313)
T d1ogqa_         143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN  222 (313)
T ss_dssp             GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSC
T ss_pred             hhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            7788888888888888877655544332111110    0             000  0000         111  14456


Q ss_pred             CCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCch
Q 037699          130 LDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPS  196 (203)
Q Consensus       130 L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~  196 (203)
                      ++.+++++|.+.+..+  .+..+++++.|++++|++++.+|+.+..+++|++|+|++|+++| .+|.
T Consensus       223 l~~l~~~~~~l~~~~~--~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g-~iP~  286 (313)
T d1ogqa_         223 TQKIHLAKNSLAFDLG--KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG-EIPQ  286 (313)
T ss_dssp             CSEEECCSSEECCBGG--GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE-ECCC
T ss_pred             cccccccccccccccc--ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccc-cCCC
Confidence            7777777776654333  35566677777777777776666667777777777777777632 4453

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1e-20  Score=135.96  Aligned_cols=175  Identities=23%  Similarity=0.180  Sum_probs=131.0

Q ss_pred             CcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCc
Q 037699            9 DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL   88 (203)
Q Consensus         9 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L   88 (203)
                      ++++.|++++|.++...+..+..+++|++|++++|.     +.. ++ .+..+++|++|++++|.++ ..+..+..+++|
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~-----l~~-l~-~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L  102 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-----LTK-LQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL  102 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-----CCE-EE-CCSCCTTCCEEECCSSCCS-SCCCCTTTCTTC
T ss_pred             cCCCEEECcCCcCCCcCHHHhhcccccccccccccc-----ccc-cc-ccccccccccccccccccc-cccccccccccc
Confidence            588999999999986666788999999999999996     443 33 3467889999999999987 556678889999


Q ss_pred             cEEEccCCcCCcchhhhhhhc---cccccCCccccccccc---cCCCCCEEEccCCccccccchhhhccCCCccEEEccC
Q 037699           89 RSVFLSHSNMNQEISKILNIF---STCILDGLEVLEMTEW---QLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQ  162 (203)
Q Consensus        89 ~~L~l~~n~~~~~~~~~~~~~---~~~~~~~l~~l~~~~~---~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~  162 (203)
                      +.++++++.+.......+..+   ......+.....++..   .++.++.+++++|.++ ..+...+..+++|+.|+|++
T Consensus       103 ~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~-~~~~~~~~~l~~L~~L~Ls~  181 (266)
T d1p9ag_         103 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQE  181 (266)
T ss_dssp             CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-CCCTTTTTTCTTCCEEECCS
T ss_pred             ccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccc-ccCccccccccccceeeccc
Confidence            999999988776544433221   1111222222222221   5678999999999996 44444788899999999999


Q ss_pred             CccccccCCCCCCCCCccEEEcCCCCCCCCC
Q 037699          163 NSLTLNVSPDWIPPFQLKELNLESCNLVGNR  193 (203)
Q Consensus       163 n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~  193 (203)
                      |+++ .+|+.+..+++|+.|+|++|++.++.
T Consensus       182 N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC  211 (266)
T d1p9ag_         182 NSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC  211 (266)
T ss_dssp             SCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred             CCCc-ccChhHCCCCCCCEEEecCCCCCCCc
Confidence            9998 67888888889999999999987664

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.4e-19  Score=129.98  Aligned_cols=155  Identities=22%  Similarity=0.255  Sum_probs=114.2

Q ss_pred             cccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhh
Q 037699            3 WVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSF   82 (203)
Q Consensus         3 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~   82 (203)
                      ..|...++|++|++++|.++. ++ .++.+++|++|++++|.     +. ..+..+..+++|+.++++++.+....+..+
T Consensus        49 ~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~Ls~N~-----l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  120 (266)
T d1p9ag_          49 ATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLDLSHNQ-----LQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGAL  120 (266)
T ss_dssp             GGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEECCSSC-----CS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTT
T ss_pred             HHhhccccccccccccccccc-cc-ccccccccccccccccc-----cc-ccccccccccccccccccccccceeecccc
Confidence            356777799999999999873 33 35678999999999995     43 346678888999999999998886666777


Q ss_pred             hccCCccEEEccCCcCCcchhhhhhh---ccccccCCcccccccc---ccCCCCCEEEccCCccccccchhhhccCCCcc
Q 037699           83 GRLCKLRSVFLSHSNMNQEISKILNI---FSTCILDGLEVLEMTE---WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLK  156 (203)
Q Consensus        83 ~~l~~L~~L~l~~n~~~~~~~~~~~~---~~~~~~~~l~~l~~~~---~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~  156 (203)
                      ..+.+++++++.+|.+....+..+..   +....+.+...-.++.   ..+++|+.|++++|.++ .+|. .+..+++|+
T Consensus       121 ~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~-~~~~~~~L~  198 (266)
T d1p9ag_         121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK-GFFGSHLLP  198 (266)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCT-TTTTTCCCS
T ss_pred             ccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccCh-hHCCCCCCC
Confidence            88888999999888887665544432   1222222222222222   26789999999999996 7777 456789999


Q ss_pred             EEEccCCcccc
Q 037699          157 YFDVSQNSLTL  167 (203)
Q Consensus       157 ~L~l~~n~~~~  167 (203)
                      .|+|++|.+..
T Consensus       199 ~L~L~~Np~~C  209 (266)
T d1p9ag_         199 FAFLHGNPWLC  209 (266)
T ss_dssp             EEECCSCCBCC
T ss_pred             EEEecCCCCCC
Confidence            99999998763

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.81  E-value=4.8e-20  Score=135.42  Aligned_cols=186  Identities=23%  Similarity=0.332  Sum_probs=138.8

Q ss_pred             cccEEecCCCccCC--CCCccccCCCCccEEeCCC-CcccccccccccccccCCCCCCCEEEccccccCccchhhhhccC
Q 037699           10 HLVFLDLSLNNFQG--PIPRGLGNLTSLRYLDLSA-NISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLC   86 (203)
Q Consensus        10 ~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~   86 (203)
                      +++.|+++++.+.+  .+|..++++++|++|++++ |.     +.+.+|..+.++++|++|++++|.+.+..+..+..+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~-----l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~  125 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN-----LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK  125 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT-----EESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccc-----cccccccccccccccchhhhccccccccccccccchh
Confidence            68999999999886  4789999999999999986 65     7778899999999999999999999988888899999


Q ss_pred             CccEEEccCCcCCcchhhhhhhccccc---cCCcccc-ccccc--cCCC-CCEEEccCCcc-------------------
Q 037699           87 KLRSVFLSHSNMNQEISKILNIFSTCI---LDGLEVL-EMTEW--QLSS-LDSVNLSNNTL-------------------  140 (203)
Q Consensus        87 ~L~~L~l~~n~~~~~~~~~~~~~~~~~---~~~l~~l-~~~~~--~~~~-L~~L~l~~n~l-------------------  140 (203)
                      .|+++++.+|.+....+..+..+....   +.+.... .++..  .+.. ++.+++++|.+                   
T Consensus       126 ~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~  205 (313)
T d1ogqa_         126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLS  205 (313)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECC
T ss_pred             hhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999988766665554332211   1111111 11111  2222 24455554444                   


Q ss_pred             ----ccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhcccC
Q 037699          141 ----FGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQKS  203 (203)
Q Consensus       141 ----~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~~~  203 (203)
                          .+..+. .+..++.++.+++++|.+++.++ .+..+++|+.|++++|++ ...+|.++.++++
T Consensus       206 ~~~~~~~~~~-~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l-~g~iP~~l~~L~~  269 (313)
T d1ogqa_         206 RNMLEGDASV-LFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRI-YGTLPQGLTQLKF  269 (313)
T ss_dssp             SSEEEECCGG-GCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCC-EECCCGGGGGCTT
T ss_pred             cccccccccc-ccccccccccccccccccccccc-ccccccccccccCccCee-cccCChHHhCCCC
Confidence                333333 45677889999999999987654 577888999999999999 4479999988764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.1e-18  Score=124.89  Aligned_cols=158  Identities=20%  Similarity=0.163  Sum_probs=88.1

Q ss_pred             CCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccC-------------------------CCC
Q 037699            8 SDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVG-------------------------NLT   62 (203)
Q Consensus         8 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~-------------------------~~~   62 (203)
                      .+.+++|++++|.++...+.++.++++|++|++++|.     +....+..+.                         .++
T Consensus        31 p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~-----l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~  105 (284)
T d1ozna_          31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-----LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG  105 (284)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-----CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCT
T ss_pred             CCCCCEEECcCCcCCCCCHHHhhcccccccccccccc-----ccccccccccccccccccccccccccccccchhhcccc
Confidence            3578999999999986666789999999999999886     4443333344                         444


Q ss_pred             CCCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCcccc
Q 037699           63 SIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFG  142 (203)
Q Consensus        63 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~  142 (203)
                      +|+++++++|.+....+..+....+|+.+++.+|.+....+..++                  ..++|+.|++++|.+. 
T Consensus       106 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~------------------~~~~L~~L~l~~N~l~-  166 (284)
T d1ozna_         106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR------------------DLGNLTHLFLHGNRIS-  166 (284)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT------------------TCTTCCEEECCSSCCC-
T ss_pred             cCCEEecCCcccccccccccchhcccchhhhccccccccChhHhc------------------cccchhhcccccCccc-
Confidence            455555555444433333344444455555555544433333222                  3344555555555553 


Q ss_pred             ccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCC
Q 037699          143 SLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNL  189 (203)
Q Consensus       143 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l  189 (203)
                      .++...+..+++|+.+++++|.+++..+..+..+++|++|++++|.+
T Consensus       167 ~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i  213 (284)
T d1ozna_         167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL  213 (284)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccc
Confidence            22222444555555555555555544444455555555555555555

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.80  E-value=5.4e-18  Score=123.88  Aligned_cols=85  Identities=21%  Similarity=0.237  Sum_probs=63.9

Q ss_pred             CCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCC
Q 037699            8 SDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCK   87 (203)
Q Consensus         8 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~   87 (203)
                      .+++++|++++|.++...+..+..+++|++|++++|.     +....|..+..++.|+++++++|.++ .+|..  ....
T Consensus        30 ~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~-----~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~--~~~~  101 (305)
T d1xkua_          30 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK-----ISKISPGAFAPLVKLERLYLSKNQLK-ELPEK--MPKT  101 (305)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-----CCCBCTTTTTTCTTCCEEECCSSCCS-BCCSS--CCTT
T ss_pred             CCCCCEEECcCCcCCCcChhHhhcccccccccccccc-----ccccchhhhhCCCccCEecccCCccC-cCccc--hhhh
Confidence            3589999999999985555678899999999999996     77777888889999999999998876 34432  2334


Q ss_pred             ccEEEccCCcCCc
Q 037699           88 LRSVFLSHSNMNQ  100 (203)
Q Consensus        88 L~~L~l~~n~~~~  100 (203)
                      +..++..+|.+..
T Consensus       102 l~~L~~~~n~l~~  114 (305)
T d1xkua_         102 LQELRVHENEITK  114 (305)
T ss_dssp             CCEEECCSSCCCB
T ss_pred             hhhhhccccchhh
Confidence            5555555555543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.1e-18  Score=123.38  Aligned_cols=180  Identities=19%  Similarity=0.172  Sum_probs=126.6

Q ss_pred             EEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCccEEE
Q 037699           13 FLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVF   92 (203)
Q Consensus        13 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~   92 (203)
                      .++.+++.++ .+|..+.  .++++|++++|.     +....+..+..+++|+++++++|.+....+..+.....+..+.
T Consensus        15 ~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~-----i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~   86 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNR-----ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLD   86 (284)
T ss_dssp             EEECCSSCCS-SCCTTCC--TTCSEEECTTSC-----CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             EEEcCCCCCC-ccCCCCC--CCCCEEECcCCc-----CCCCCHHHhhccccccccccccccccccccccccccccccccc
Confidence            4677777777 5665553  568999999997     7766667899999999999999998865555566666666665


Q ss_pred             cc-CCcCCcchhhhhhhcc---ccccCCccccccc--c-ccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCcc
Q 037699           93 LS-HSNMNQEISKILNIFS---TCILDGLEVLEMT--E-WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSL  165 (203)
Q Consensus        93 l~-~n~~~~~~~~~~~~~~---~~~~~~l~~l~~~--~-~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~  165 (203)
                      .. .+.+....+..+..+.   ...+.......++  . ....+|+.+++++|.++ .++...+..+++|+.|++++|.+
T Consensus        87 ~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~-~i~~~~f~~~~~L~~L~l~~N~l  165 (284)
T d1ozna_          87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRI  165 (284)
T ss_dssp             CCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCC
T ss_pred             cccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhcccccc-ccChhHhccccchhhcccccCcc
Confidence            53 3344433333332211   1111111111111  1 15678999999999996 55555788899999999999999


Q ss_pred             ccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhccc
Q 037699          166 TLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQK  202 (203)
Q Consensus       166 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~~  202 (203)
                      +...+..+..+++|+++++++|.+ .+..|.++..++
T Consensus       166 ~~l~~~~f~~l~~L~~l~l~~N~l-~~i~~~~f~~l~  201 (284)
T d1ozna_         166 SSVPERAFRGLHSLDRLLLHQNRV-AHVHPHAFRDLG  201 (284)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCT
T ss_pred             cccchhhhccccccchhhhhhccc-cccChhHhhhhh
Confidence            977778888999999999999999 455577777664

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=2.8e-16  Score=107.78  Aligned_cols=156  Identities=21%  Similarity=0.296  Sum_probs=121.6

Q ss_pred             CCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCC
Q 037699            8 SDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCK   87 (203)
Q Consensus         8 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~   87 (203)
                      ..+++.|++++|.++. + +.++.+++|++|++++|.     +.+..+  ++.+++|++|++++|.+. .++ .+..++.
T Consensus        39 l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~-----l~~~~~--l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~  107 (199)
T d2omxa2          39 LDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQ-----LTDITP--LKNLTKLVDILMNNNQIA-DIT-PLANLTN  107 (199)
T ss_dssp             HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSC-----CCCCGG--GTTCTTCCEEECCSSCCC-CCG-GGTTCTT
T ss_pred             hcCCCEEECCCCCCCC-c-cccccCCCcCcCcccccc-----ccCccc--ccCCcccccccccccccc-ccc-ccccccc
Confidence            3588999999999873 3 357889999999999996     555432  788999999999999887 333 4788999


Q ss_pred             ccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCcccc
Q 037699           88 LRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTL  167 (203)
Q Consensus        88 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~  167 (203)
                      |+.++++++......+  +.                  .+++|+.+++++|.+. ..+  .+..+++++.|++++|.+++
T Consensus       108 L~~L~l~~~~~~~~~~--~~------------------~l~~L~~L~l~~n~l~-~~~--~l~~~~~L~~L~l~~n~l~~  164 (199)
T d2omxa2         108 LTGLTLFNNQITDIDP--LK------------------NLTNLNRLELSSNTIS-DIS--ALSGLTSLQQLNFSSNQVTD  164 (199)
T ss_dssp             CSEEECCSSCCCCCGG--GT------------------TCTTCSEEECCSSCCC-CCG--GGTTCTTCSEEECCSSCCCC
T ss_pred             cccccccccccccccc--cc------------------hhhhhHHhhhhhhhhc-ccc--cccccccccccccccccccC
Confidence            9999999887754321  11                  6789999999999985 333  47789999999999999985


Q ss_pred             ccCCCCCCCCCccEEEcCCCCCCCCCCchhhhccc
Q 037699          168 NVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQK  202 (203)
Q Consensus       168 ~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~~  202 (203)
                      .  +.+..+++|++|++++|++  +.++ .+..++
T Consensus       165 l--~~l~~l~~L~~L~ls~N~i--~~i~-~l~~L~  194 (199)
T d2omxa2         165 L--KPLANLTTLERLDISSNKV--SDIS-VLAKLT  194 (199)
T ss_dssp             C--GGGTTCTTCCEEECCSSCC--CCCG-GGGGCT
T ss_pred             C--ccccCCCCCCEEECCCCCC--CCCc-cccCCC
Confidence            3  3478899999999999999  3454 355554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=4.4e-17  Score=111.29  Aligned_cols=89  Identities=24%  Similarity=0.251  Sum_probs=41.7

Q ss_pred             cccEEecCCCccCC-CCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCc
Q 037699           10 HLVFLDLSLNNFQG-PIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL   88 (203)
Q Consensus        10 ~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L   88 (203)
                      ++++|++++|.++. ..+..+..+++|++|++++|.     +....+..+..+++|++|++++|.++...+..|..+++|
T Consensus        30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~-----i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L  104 (192)
T d1w8aa_          30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-----LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQL  104 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-----CCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTC
T ss_pred             CCCEEEeCCCCCcccccccccCCCceEeeeeccccc-----cccccccccccccccceeeeccccccccCHHHHhCCCcc
Confidence            44455555555442 223334445555555555543     444444444444555555555555543333344445555


Q ss_pred             cEEEccCCcCCcchh
Q 037699           89 RSVFLSHSNMNQEIS  103 (203)
Q Consensus        89 ~~L~l~~n~~~~~~~  103 (203)
                      ++|++++|.+....+
T Consensus       105 ~~L~L~~N~l~~i~~  119 (192)
T d1w8aa_         105 KTLNLYDNQISCVMP  119 (192)
T ss_dssp             CEEECCSSCCCEECT
T ss_pred             cccccCCccccccCH
Confidence            555555555444333

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=1.3e-15  Score=105.28  Aligned_cols=155  Identities=22%  Similarity=0.287  Sum_probs=108.2

Q ss_pred             CcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCc
Q 037699            9 DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL   88 (203)
Q Consensus         9 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L   88 (203)
                      ..++.|++++|.++. ++ .+..+++|++|++++|.     +.+. + .+..+++|++|++++|.++ .++ .+..+++|
T Consensus        46 ~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~-----i~~l-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L  114 (210)
T d1h6ta2          46 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNK-----LTDI-K-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKL  114 (210)
T ss_dssp             HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSC-----CCCC-G-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTC
T ss_pred             cCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCcc-----ccCc-c-ccccCcccccccccccccc-ccc-cccccccc
Confidence            478889999998874 33 47889999999999996     5543 3 3578899999999999987 444 57888999


Q ss_pred             cEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccc
Q 037699           89 RSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLN  168 (203)
Q Consensus        89 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~  168 (203)
                      +.+++.+|.+....  .+.                  .++.++.+++++|.+.+ ..  .+..+++|+.+++++|.+++.
T Consensus       115 ~~L~l~~~~~~~~~--~l~------------------~l~~l~~l~~~~n~l~~-~~--~~~~l~~L~~l~l~~n~l~~i  171 (210)
T d1h6ta2         115 KSLSLEHNGISDIN--GLV------------------HLPQLESLYLGNNKITD-IT--VLSRLTKLDTLSLEDNQISDI  171 (210)
T ss_dssp             CEEECTTSCCCCCG--GGG------------------GCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCCC
T ss_pred             cccccccccccccc--ccc------------------ccccccccccccccccc-cc--ccccccccccccccccccccc
Confidence            99999988775421  111                  45667777777777643 22  345667777777777777642


Q ss_pred             cCCCCCCCCCccEEEcCCCCCCCCCCchhhhccc
Q 037699          169 VSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQK  202 (203)
Q Consensus       169 ~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~~  202 (203)
                       + .+..+++|++|++++|++  ..+| .+..++
T Consensus       172 -~-~l~~l~~L~~L~Ls~N~i--~~l~-~l~~l~  200 (210)
T d1h6ta2         172 -V-PLAGLTKLQNLYLSKNHI--SDLR-ALAGLK  200 (210)
T ss_dssp             -G-GGTTCTTCCEEECCSSCC--CBCG-GGTTCT
T ss_pred             -c-cccCCCCCCEEECCCCCC--CCCh-hhcCCC
Confidence             2 256677777777777777  3344 355443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=1.2e-15  Score=106.69  Aligned_cols=176  Identities=20%  Similarity=0.241  Sum_probs=126.9

Q ss_pred             CCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCC
Q 037699            8 SDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCK   87 (203)
Q Consensus         8 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~   87 (203)
                      +++|+.|++.+|.++. + +.+..+++|++|++++|.     +.+..+  +..+++++++++++|.++ .+ ..+..++.
T Consensus        40 l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~-----i~~~~~--l~~l~~l~~l~~~~n~~~-~i-~~l~~l~~  108 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQ-----ITDLAP--LKNLTKITELELSGNPLK-NV-SAIAGLQS  108 (227)
T ss_dssp             HHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSC-----CCCCGG--GTTCCSCCEEECCSCCCS-CC-GGGTTCTT
T ss_pred             cCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCce-----eecccc--cccccccccccccccccc-cc-cccccccc
Confidence            4589999999999984 4 468899999999999996     555433  788999999999999887 33 35788999


Q ss_pred             ccEEEccCCcCCcchhhhh-hhccccccCCccccccc-cccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCcc
Q 037699           88 LRSVFLSHSNMNQEISKIL-NIFSTCILDGLEVLEMT-EWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSL  165 (203)
Q Consensus        88 L~~L~l~~n~~~~~~~~~~-~~~~~~~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~  165 (203)
                      |+.++++++......+-.. .........+....... ...+++|+.|++++|.+.+. .  .+..+++|+.|++++|++
T Consensus       109 L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~--~l~~l~~L~~L~Ls~n~l  185 (227)
T d1h6ua2         109 IKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL-T--PLANLSKLTTLKADDNKI  185 (227)
T ss_dssp             CCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC-G--GGTTCTTCCEEECCSSCC
T ss_pred             ccccccccccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccc-h--hhcccccceecccCCCcc
Confidence            9999999887765432111 11111111222111111 22678899999999988532 2  367899999999999998


Q ss_pred             ccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhccc
Q 037699          166 TLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQK  202 (203)
Q Consensus       166 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~~  202 (203)
                      ++ + +.+..+++|++|++++|++  ..++. +..++
T Consensus       186 ~~-l-~~l~~l~~L~~L~Ls~N~l--t~i~~-l~~l~  217 (227)
T d1h6ua2         186 SD-I-SPLASLPNLIEVHLKNNQI--SDVSP-LANTS  217 (227)
T ss_dssp             CC-C-GGGGGCTTCCEEECTTSCC--CBCGG-GTTCT
T ss_pred             CC-C-hhhcCCCCCCEEECcCCcC--CCCcc-cccCC
Confidence            75 3 3477889999999999999  44553 55544

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.69  E-value=2.3e-15  Score=109.74  Aligned_cols=41  Identities=29%  Similarity=0.192  Sum_probs=37.0

Q ss_pred             ccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCc
Q 037699            4 VFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANI   44 (203)
Q Consensus         4 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~   44 (203)
                      .|..+++|++|++++|.+....|..+..+++|+++++++|.
T Consensus        50 ~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~   90 (305)
T d1xkua_          50 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ   90 (305)
T ss_dssp             TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred             HhhccccccccccccccccccchhhhhCCCccCEecccCCc
Confidence            57777899999999999997778889999999999999985

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.68  E-value=4.3e-16  Score=106.27  Aligned_cols=131  Identities=21%  Similarity=0.305  Sum_probs=90.8

Q ss_pred             cccEEecCCCccCCCCCccccCCCCccEEeCCCCccccccccc-ccccccCCCCCCCEEEccccccCccchhhhhccCCc
Q 037699           10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSG-TFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL   88 (203)
Q Consensus        10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L   88 (203)
                      ..++++.+++.++ .+|..+.  .++++|++++|.     +.. ..+..+..+++|++|++++|.+....+..+..+++|
T Consensus         9 ~~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~-----i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L   80 (192)
T d1w8aa_           9 EGTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNE-----LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI   80 (192)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSCC-----CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred             cCCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCC-----CcccccccccCCCceEeeeecccccccccccccccccccc
Confidence            3457788888877 5565542  567888888886     544 334556777788888888887776666777777778


Q ss_pred             cEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCcccc
Q 037699           89 RSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTL  167 (203)
Q Consensus        89 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~  167 (203)
                      ++|++++|++....+..+.                  .+++|+.|++++|.+. .++...|..+++|+++++++|.+..
T Consensus        81 ~~L~Ls~N~l~~l~~~~F~------------------~l~~L~~L~L~~N~l~-~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          81 QELQLGENKIKEISNKMFL------------------GLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CEEECCSCCCCEECSSSST------------------TCTTCCEEECCSSCCC-EECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             ceeeeccccccccCHHHHh------------------CCCcccccccCCcccc-ccCHHHhcCCccccccccccccccc
Confidence            8888887777765555444                  5677777777777774 4444466777777777777777654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=4.2e-15  Score=102.70  Aligned_cols=146  Identities=26%  Similarity=0.367  Sum_probs=117.8

Q ss_pred             cccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhc
Q 037699            5 FGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGR   84 (203)
Q Consensus         5 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~   84 (203)
                      +..+++|++|++++|.+++ ++ .++.+++|++|++++|.     +.. ++ .+..+++|+.+++++|.+. .+ ..+..
T Consensus        64 l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~-----i~~-l~-~l~~l~~L~~L~l~~~~~~-~~-~~l~~  132 (210)
T d1h6ta2          64 IQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENK-----VKD-LS-SLKDLKKLKSLSLEHNGIS-DI-NGLVH  132 (210)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSC-----CCC-GG-GGTTCTTCCEEECTTSCCC-CC-GGGGG
T ss_pred             HhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccc-----ccc-cc-ccccccccccccccccccc-cc-ccccc
Confidence            4567799999999999985 33 46789999999999996     544 34 4788999999999999886 33 45788


Q ss_pred             cCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCc
Q 037699           85 LCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNS  164 (203)
Q Consensus        85 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~  164 (203)
                      ++.++.+++.+|.+.....  ..                  .+++|+.+++++|.+.+ ++  .+..+++|+.|++++|.
T Consensus       133 l~~l~~l~~~~n~l~~~~~--~~------------------~l~~L~~l~l~~n~l~~-i~--~l~~l~~L~~L~Ls~N~  189 (210)
T d1h6ta2         133 LPQLESLYLGNNKITDITV--LS------------------RLTKLDTLSLEDNQISD-IV--PLAGLTKLQNLYLSKNH  189 (210)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GG------------------GCTTCSEEECCSSCCCC-CG--GGTTCTTCCEEECCSSC
T ss_pred             ccccccccccccccccccc--cc------------------ccccccccccccccccc-cc--cccCCCCCCEEECCCCC
Confidence            9999999999998865321  11                  57889999999999963 33  37789999999999999


Q ss_pred             cccccCCCCCCCCCccEEEcCC
Q 037699          165 LTLNVSPDWIPPFQLKELNLES  186 (203)
Q Consensus       165 ~~~~~~~~l~~~~~L~~L~l~~  186 (203)
                      ++. + +.+..+++|++|+|++
T Consensus       190 i~~-l-~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         190 ISD-L-RALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCB-C-GGGTTCTTCSEEEEEE
T ss_pred             CCC-C-hhhcCCCCCCEEEccC
Confidence            984 3 3588899999999874

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.8e-15  Score=98.62  Aligned_cols=127  Identities=17%  Similarity=0.091  Sum_probs=83.0

Q ss_pred             cCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccC
Q 037699            7 LSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLC   86 (203)
Q Consensus         7 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~   86 (203)
                      ...+++.|++++|.++ .++..+..+.+|+.|++++|.     +...  +.+..+++|++|++++|.++...+..+..++
T Consensus        16 n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~-----i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~   87 (162)
T d1a9na_          16 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNE-----IRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP   87 (162)
T ss_dssp             CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSC-----CCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred             CcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCC-----CCcc--CCcccCcchhhhhcccccccCCCcccccccc
Confidence            4447888888888887 445556677888888888885     4433  3467778888888888888744444456778


Q ss_pred             CccEEEccCCcCCcchh-hhhhhccccccCCccccccccccCCCCCEEEccCCccccccc--hhhhccCCCccEEE
Q 037699           87 KLRSVFLSHSNMNQEIS-KILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLF--EIHFAKLSKLKYFD  159 (203)
Q Consensus        87 ~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~~~~L~~L~  159 (203)
                      +|++|++++|.+..... ..+.                  .+++|+.+++++|.+.+...  ...+..+++|+.||
T Consensus        88 ~L~~L~L~~N~i~~~~~l~~l~------------------~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          88 DLTELILTNNSLVELGDLDPLA------------------SLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             TCCEEECCSCCCCCGGGGGGGG------------------GCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccccceeccccccccccccccc------------------cccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            88888888887764321 1121                  56777777777777642211  12355667777665

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=1.7e-14  Score=98.80  Aligned_cols=142  Identities=25%  Similarity=0.319  Sum_probs=112.3

Q ss_pred             cccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhc
Q 037699            5 FGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGR   84 (203)
Q Consensus         5 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~   84 (203)
                      +..+++|++|++++|.+++. + .+.++++|++|++++|.     ... .+ .+..++.|+.+++++|.....  ..+..
T Consensus        58 l~~l~nL~~L~Ls~N~l~~~-~-~l~~l~~L~~L~l~~n~-----~~~-~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~  126 (199)
T d2omxa2          58 VEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQ-----IAD-IT-PLANLTNLTGLTLFNNQITDI--DPLKN  126 (199)
T ss_dssp             GGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSC-----CCC-CG-GGTTCTTCSEEECCSSCCCCC--GGGTT
T ss_pred             cccCCCcCcCccccccccCc-c-cccCCcccccccccccc-----ccc-cc-ccccccccccccccccccccc--cccch
Confidence            44567999999999999853 3 38899999999999995     433 33 378899999999999988732  34778


Q ss_pred             cCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCc
Q 037699           85 LCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNS  164 (203)
Q Consensus        85 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~  164 (203)
                      +++|+.+++++|.+....  .+.                  .+++++.|++.+|.+++ .+  .++++++|+.|++++|+
T Consensus       127 l~~L~~L~l~~n~l~~~~--~l~------------------~~~~L~~L~l~~n~l~~-l~--~l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         127 LTNLNRLELSSNTISDIS--ALS------------------GLTSLQQLNFSSNQVTD-LK--PLANLTTLERLDISSNK  183 (199)
T ss_dssp             CTTCSEEECCSSCCCCCG--GGT------------------TCTTCSEEECCSSCCCC-CG--GGTTCTTCCEEECCSSC
T ss_pred             hhhhHHhhhhhhhhcccc--ccc------------------ccccccccccccccccC-Cc--cccCCCCCCEEECCCCC
Confidence            999999999999876421  122                  57899999999999964 33  47899999999999999


Q ss_pred             cccccCCCCCCCCCccEE
Q 037699          165 LTLNVSPDWIPPFQLKEL  182 (203)
Q Consensus       165 ~~~~~~~~l~~~~~L~~L  182 (203)
                      ++. + +.+..+++|++|
T Consensus       184 i~~-i-~~l~~L~~L~~L  199 (199)
T d2omxa2         184 VSD-I-SVLAKLTNLESL  199 (199)
T ss_dssp             CCC-C-GGGGGCTTCSEE
T ss_pred             CCC-C-ccccCCCCCCcC
Confidence            985 3 346778888875

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=7.4e-15  Score=103.50  Aligned_cols=181  Identities=14%  Similarity=0.139  Sum_probs=122.3

Q ss_pred             CCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccc-cccccCCCCCCCEEEccc-cccCccchhhhhcc
Q 037699            8 SDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGT-FSSSVGNLTSIQTLDLSF-NNLEGKIATSFGRL   85 (203)
Q Consensus         8 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~l   85 (203)
                      .+++++|++++|.++...+..|.++++|++|++++|.     .... .+..+..++.++++.+.. +.+....+..+..+
T Consensus        28 ~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~-----~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l  102 (242)
T d1xwdc1          28 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND-----VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNL  102 (242)
T ss_dssp             CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCT-----TCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECC
T ss_pred             CCCCCEEECcCCcCCccChhHhhccchhhhhhhcccc-----ccceeecccccccccccccccccccccccccccccccc
Confidence            3589999999999986556678999999999999996     5443 345677889999998764 56665666778999


Q ss_pred             CCccEEEccCCcCCcchhhh-hhhc---cccccCCccccccccc---c-CCCCCEEEccCCccccccchhhhccCCCccE
Q 037699           86 CKLRSVFLSHSNMNQEISKI-LNIF---STCILDGLEVLEMTEW---Q-LSSLDSVNLSNNTLFGSLFEIHFAKLSKLKY  157 (203)
Q Consensus        86 ~~L~~L~l~~n~~~~~~~~~-~~~~---~~~~~~~l~~l~~~~~---~-~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~  157 (203)
                      ++|+++++.+|.+....+.. ...+   ......+.....++..   . ...++.+++.+|.+. .++...+ ...++..
T Consensus       103 ~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~-~i~~~~~-~~~~l~~  180 (242)
T d1xwdc1         103 PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNCAF-NGTQLDE  180 (242)
T ss_dssp             TTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTTT-TTCCEEE
T ss_pred             ccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc-ccccccc-cchhhhc
Confidence            99999999999876543221 1111   1111112111222211   2 246888999998885 4444333 3444444


Q ss_pred             -EEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchh
Q 037699          158 -FDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSW  197 (203)
Q Consensus       158 -L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~  197 (203)
                       +++++|.++......+..+++|++|++++|+|  ..+|.+
T Consensus       181 ~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l--~~l~~~  219 (242)
T d1xwdc1         181 LNLSDNNNLEELPNDVFHGASGPVILDISRTRI--HSLPSY  219 (242)
T ss_dssp             EECTTCTTCCCCCTTTTTTSCCCSEEECTTSCC--CCCCSS
T ss_pred             cccccccccccccHHHhcCCCCCCEEECCCCcC--CccCHH
Confidence             45677888854455678889999999999998  455543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=1.5e-14  Score=91.41  Aligned_cols=79  Identities=25%  Similarity=0.375  Sum_probs=55.1

Q ss_pred             cEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCccEE
Q 037699           12 VFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSV   91 (203)
Q Consensus        12 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L   91 (203)
                      |.|++++|.++ .++ .+..+.+|++|++++|.     +. .+|+.+..+++|++|++++|.++ .++ .+..+++|+++
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~-----l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L   70 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNR-----LR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQEL   70 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSC-----CC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEE
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCc-----cC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeE
Confidence            56788888887 344 46778888888888884     43 45666777777888888877776 333 36677777777


Q ss_pred             EccCCcCCc
Q 037699           92 FLSHSNMNQ  100 (203)
Q Consensus        92 ~l~~n~~~~  100 (203)
                      ++++|++..
T Consensus        71 ~l~~N~i~~   79 (124)
T d1dcea3          71 LLCNNRLQQ   79 (124)
T ss_dssp             ECCSSCCCS
T ss_pred             ECCCCccCC
Confidence            777776654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=4e-15  Score=107.44  Aligned_cols=182  Identities=16%  Similarity=0.154  Sum_probs=125.3

Q ss_pred             CcccEEecCCCccCCC-CCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEcccc-ccCcc-chhhhhcc
Q 037699            9 DHLVFLDLSLNNFQGP-IPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFN-NLEGK-IATSFGRL   85 (203)
Q Consensus         9 ~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~-~~~~~~~l   85 (203)
                      ..|+.|++++|.++.. +...+..+++|++|+++++.     +.+..+..+..+++|++|++++| .+++. +...+..+
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~-----l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~  120 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-----LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC  120 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-----CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccC-----CCcHHHHHHhcCCCCcCccccccccccccccchhhHHH
Confidence            4899999999987643 34556789999999999996     66667777888999999999986 45532 23334678


Q ss_pred             CCccEEEccCCc-CCcchh-hhhhhccccccCCccccccc------------c--ccCCCCCEEEccCCc-cccccchhh
Q 037699           86 CKLRSVFLSHSN-MNQEIS-KILNIFSTCILDGLEVLEMT------------E--WQLSSLDSVNLSNNT-LFGSLFEIH  148 (203)
Q Consensus        86 ~~L~~L~l~~n~-~~~~~~-~~~~~~~~~~~~~l~~l~~~------------~--~~~~~L~~L~l~~n~-l~~~~~~~~  148 (203)
                      ++|++|+++++. +.+... ......    ...++.+.+.            .  ..+++|++|++++|. +++.... .
T Consensus       121 ~~L~~L~ls~c~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~-~  195 (284)
T d2astb2         121 SRLDELNLSWCFDFTEKHVQVAVAHV----SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ-E  195 (284)
T ss_dssp             TTCCEEECCCCTTCCHHHHHHHHHHS----CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-G
T ss_pred             Hhccccccccccccccccchhhhccc----ccccchhhhcccccccccccccccccccccccccccccccCCCchhhh-h
Confidence            999999999864 433222 111110    1222222211            1  157899999999874 5544444 6


Q ss_pred             hccCCCccEEEccCC-ccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhcc
Q 037699          149 FAKLSKLKYFDVSQN-SLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQ  201 (203)
Q Consensus       149 l~~~~~L~~L~l~~n-~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~  201 (203)
                      +..+++|++|++++| .++......+..+++|+.|++.++ ++++.++.....+
T Consensus       196 l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~l  248 (284)
T d2astb2         196 FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEAL  248 (284)
T ss_dssp             GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHS
T ss_pred             hcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhC
Confidence            778999999999996 577655566788899999999987 6455554443333

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.2e-15  Score=98.96  Aligned_cols=129  Identities=21%  Similarity=0.220  Sum_probs=99.2

Q ss_pred             cccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhhh
Q 037699           28 GLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILN  107 (203)
Q Consensus        28 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  107 (203)
                      .+....++++|++++|.     +... +..+..+++|++|++++|.++ .+ ..+..+++|++|++++|.+....+..+.
T Consensus        13 ~~~n~~~lr~L~L~~n~-----I~~i-~~~~~~l~~L~~L~Ls~N~i~-~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~   84 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYK-----IPVI-ENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQ   84 (162)
T ss_dssp             EEECTTSCEEEECTTSC-----CCSC-CCGGGGTTCCSEEECCSSCCC-EE-CCCCCCSSCCEEECCSSCCCEECSCHHH
T ss_pred             hccCcCcCcEEECCCCC-----CCcc-CccccccccCCEEECCCCCCC-cc-CCcccCcchhhhhcccccccCCCccccc
Confidence            34567789999999996     4443 666677889999999999998 44 3578899999999999999876554444


Q ss_pred             hccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCC----CCCCCCCccEEE
Q 037699          108 IFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSP----DWIPPFQLKELN  183 (203)
Q Consensus       108 ~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~----~l~~~~~L~~L~  183 (203)
                                        .+++|+.|++++|.+.+......+..+++|+.+++++|.++.. +.    .+..+++|+.||
T Consensus        85 ------------------~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~-~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          85 ------------------ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             ------------------HCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEET
T ss_pred             ------------------cccccccceeccccccccccccccccccccchhhcCCCccccc-cchHHHHHHHCCCcCeeC
Confidence                              5788999999999986322223678899999999999998742 22    355678888876

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=5.5e-14  Score=105.13  Aligned_cols=178  Identities=21%  Similarity=0.235  Sum_probs=118.6

Q ss_pred             cccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhc
Q 037699            5 FGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGR   84 (203)
Q Consensus         5 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~   84 (203)
                      +..+++++.+++++|.+++..+  +....+|+.+++++|.     +.. + +.+..+++++.+++++|.+++. + .+..
T Consensus       193 ~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~-----l~~-~-~~l~~l~~L~~L~l~~n~l~~~-~-~~~~  261 (384)
T d2omza2         193 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ-----LKD-I-GTLASLTNLTDLDLANNQISNL-A-PLSG  261 (384)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSC-----CCC-C-GGGGGCTTCSEEECCSSCCCCC-G-GGTT
T ss_pred             cccccccceeeccCCccCCCCc--ccccCCCCEEECCCCC-----CCC-c-chhhcccccchhccccCccCCC-C-cccc
Confidence            3445678888999888875433  4567888999999885     443 2 3467788899999999888743 2 3677


Q ss_pred             cCCccEEEccCCcCCcchhh-hhhhccccccCCccccccc-cccCCCCCEEEccCCccccccchhhhccCCCccEEEccC
Q 037699           85 LCKLRSVFLSHSNMNQEISK-ILNIFSTCILDGLEVLEMT-EWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQ  162 (203)
Q Consensus        85 l~~L~~L~l~~n~~~~~~~~-~~~~~~~~~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~  162 (203)
                      +++|++++++.+.+....+- ....+..........-.++ ...+++++.+++++|.+.+ .+  .+..+++|+.|++++
T Consensus       262 ~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~-l~--~l~~l~~L~~L~L~~  338 (384)
T d2omza2         262 LTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD-IS--PVSSLTKLQRLFFAN  338 (384)
T ss_dssp             CTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSC-CG--GGGGCTTCCEEECCS
T ss_pred             cccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCC-Cc--ccccCCCCCEEECCC
Confidence            88899999988887654321 1111111111111111111 1267788999999998864 32  367888999999999


Q ss_pred             CccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhcc
Q 037699          163 NSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQ  201 (203)
Q Consensus       163 n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~  201 (203)
                      |.++. + +.+..+++|++|++++|.++  .++. +..+
T Consensus       339 n~l~~-l-~~l~~l~~L~~L~l~~N~l~--~l~~-l~~l  372 (384)
T d2omza2         339 NKVSD-V-SSLANLTNINWLSAGHNQIS--DLTP-LANL  372 (384)
T ss_dssp             SCCCC-C-GGGGGCTTCCEEECCSSCCC--BCGG-GTTC
T ss_pred             CCCCC-C-hhHcCCCCCCEEECCCCcCC--CChh-hccC
Confidence            98874 3 35778889999999999883  3443 4444

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=7.2e-14  Score=104.47  Aligned_cols=167  Identities=20%  Similarity=0.276  Sum_probs=117.3

Q ss_pred             ccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhcc
Q 037699            6 GLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRL   85 (203)
Q Consensus         6 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l   85 (203)
                      ...++|+.+++++|.++. + +.+..+++++.+++++|.     +.+..  .+..+++|++++++++.+++. + .+..+
T Consensus       216 ~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~-----l~~~~--~~~~~~~L~~L~l~~~~l~~~-~-~~~~~  284 (384)
T d2omza2         216 GILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQ-----ISNLA--PLSGLTKLTELKLGANQISNI-S-PLAGL  284 (384)
T ss_dssp             GGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSC-----CCCCG--GGTTCTTCSEEECCSSCCCCC-G-GGTTC
T ss_pred             cccCCCCEEECCCCCCCC-c-chhhcccccchhccccCc-----cCCCC--cccccccCCEeeccCcccCCC-C-ccccc
Confidence            344689999999998873 3 467788999999999986     55433  267788999999998888733 2 35667


Q ss_pred             CCccEEEccCCcCCcchh-hhhhhccccccCCccccccc-cccCCCCCEEEccCCccccccchhhhccCCCccEEEccCC
Q 037699           86 CKLRSVFLSHSNMNQEIS-KILNIFSTCILDGLEVLEMT-EWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQN  163 (203)
Q Consensus        86 ~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n  163 (203)
                      +.++.+.+..|.+..... .....+....+.+.+.-+++ ...+++|+.|++++|.++ .++  .+..+++|+.|++++|
T Consensus       285 ~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~-~l~--~l~~l~~L~~L~l~~N  361 (384)
T d2omza2         285 TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVS-DVS--SLANLTNINWLSAGHN  361 (384)
T ss_dssp             TTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCC-CCG--GGGGCTTCCEEECCSS
T ss_pred             cccccccccccccccccccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCC-CCh--hHcCCCCCCEEECCCC
Confidence            777788887777654321 11111111112222211222 237899999999999986 343  4788999999999999


Q ss_pred             ccccccCCCCCCCCCccEEEcCCCC
Q 037699          164 SLTLNVSPDWIPPFQLKELNLESCN  188 (203)
Q Consensus       164 ~~~~~~~~~l~~~~~L~~L~l~~n~  188 (203)
                      ++++..+  +..+++|++|+|++|.
T Consensus       362 ~l~~l~~--l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         362 QISDLTP--LANLTRITQLGLNDQA  384 (384)
T ss_dssp             CCCBCGG--GTTCTTCSEEECCCEE
T ss_pred             cCCCChh--hccCCCCCEeeCCCCc
Confidence            9986443  7889999999999873

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=1.2e-13  Score=96.37  Aligned_cols=165  Identities=24%  Similarity=0.277  Sum_probs=115.2

Q ss_pred             cccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhc
Q 037699            5 FGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGR   84 (203)
Q Consensus         5 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~   84 (203)
                      +..+++|+.+++++|.+++..  .+..+++++.+++++|.     ... + +.+.++++|+.+.++++...+.  ..+..
T Consensus        59 l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~-----~~~-i-~~l~~l~~L~~l~l~~~~~~~~--~~~~~  127 (227)
T d1h6ua2          59 VQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNP-----LKN-V-SAIAGLQSIKTLDLTSTQITDV--TPLAG  127 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCC-----CSC-C-GGGTTCTTCCEEECTTSCCCCC--GGGTT
T ss_pred             HhcCCCCcEeecCCceeeccc--ccccccccccccccccc-----ccc-c-cccccccccccccccccccccc--chhcc
Confidence            456789999999999988433  38889999999999985     433 3 3477889999999998877632  23556


Q ss_pred             cCCccEEEccCCcCCcchhh-hhhhccccccCCccccccc-cccCCCCCEEEccCCccccccchhhhccCCCccEEEccC
Q 037699           85 LCKLRSVFLSHSNMNQEISK-ILNIFSTCILDGLEVLEMT-EWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQ  162 (203)
Q Consensus        85 l~~L~~L~l~~n~~~~~~~~-~~~~~~~~~~~~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~  162 (203)
                      .+.+..+.+..+.+....+. ....+....+.+....+.. ...+++|+.|++++|.+. .++  .+..+++|+.|++++
T Consensus       128 ~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~-~l~--~l~~l~~L~~L~Ls~  204 (227)
T d1h6ua2         128 LSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKIS-DIS--PLASLPNLIEVHLKN  204 (227)
T ss_dssp             CTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC-CCG--GGGGCTTCCEEECTT
T ss_pred             ccchhhhhchhhhhchhhhhccccccccccccccccccchhhcccccceecccCCCccC-CCh--hhcCCCCCCEEECcC
Confidence            67777777777766543221 1111111112222111111 127789999999999986 443  478899999999999


Q ss_pred             CccccccCCCCCCCCCccEEEcC
Q 037699          163 NSLTLNVSPDWIPPFQLKELNLE  185 (203)
Q Consensus       163 n~~~~~~~~~l~~~~~L~~L~l~  185 (203)
                      |++++. + .+..+++|++|+++
T Consensus       205 N~lt~i-~-~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         205 NQISDV-S-PLANTSNLFIVTLT  225 (227)
T ss_dssp             SCCCBC-G-GGTTCTTCCEEEEE
T ss_pred             CcCCCC-c-ccccCCCCCEEEee
Confidence            999853 3 37889999999986

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=1.4e-13  Score=86.78  Aligned_cols=104  Identities=24%  Similarity=0.268  Sum_probs=70.1

Q ss_pred             cEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhhhhccccccC
Q 037699           36 RYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILD  115 (203)
Q Consensus        36 ~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~  115 (203)
                      +.|++++|.     +.. ++ .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.... . +.        
T Consensus         1 R~L~Ls~n~-----l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l~-~-~~--------   62 (124)
T d1dcea3           1 RVLHLAHKD-----LTV-LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-G-VA--------   62 (124)
T ss_dssp             SEEECTTSC-----CSS-CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-G-GT--------
T ss_pred             CEEEcCCCC-----CCC-Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccccC-c-cc--------
Confidence            467778775     443 33 3677778888888888887 56667777888888888888776531 1 21        


Q ss_pred             CccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCcccc
Q 037699          116 GLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTL  167 (203)
Q Consensus       116 ~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~  167 (203)
                                .+++|+.+++++|.+.+......+..+++|+.+++++|.++.
T Consensus        63 ----------~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          63 ----------NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             ----------TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             ----------cccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence                      567778888888777532222356677777777777777763

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4.1e-13  Score=96.72  Aligned_cols=180  Identities=17%  Similarity=0.174  Sum_probs=121.6

Q ss_pred             ccEEecCCCccCCCCCccccCCCCccEEeCCCCccccccccc-ccccccCCCCCCCEEEccccccCccchhhhhccCCcc
Q 037699           11 LVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSG-TFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLR   89 (203)
Q Consensus        11 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~   89 (203)
                      +..+.++........ .......+|++|+++++.     +.. .+...+..+++|++|++.+|.+++..+..+..+++|+
T Consensus        25 ~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~-----i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~   98 (284)
T d2astb2          25 VIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSV-----IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLV   98 (284)
T ss_dssp             CSEEECTTCEECSCC-CSCCCCBCCCEEECTTCE-----ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCS
T ss_pred             ceEeeccccccccch-hhhccCCCCCEEECCCCc-----cCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCc
Confidence            344555555444222 223345689999999986     432 3445577889999999999999877888889999999


Q ss_pred             EEEccCC-cCCcchhhh-hhhccccccCCcccccccc--------------ccCCCCCEEEccCC--ccccccchhhhcc
Q 037699           90 SVFLSHS-NMNQEISKI-LNIFSTCILDGLEVLEMTE--------------WQLSSLDSVNLSNN--TLFGSLFEIHFAK  151 (203)
Q Consensus        90 ~L~l~~n-~~~~~~~~~-~~~~~~~~~~~l~~l~~~~--------------~~~~~L~~L~l~~n--~l~~~~~~~~l~~  151 (203)
                      +|+++++ .+++..... ...     ++.++.+.+..              ...+.|+.|+++++  .+.+......+..
T Consensus        99 ~L~Ls~c~~itd~~l~~l~~~-----~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~  173 (284)
T d2astb2          99 RLNLSGCSGFSEFALQTLLSS-----CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR  173 (284)
T ss_dssp             EEECTTCBSCCHHHHHHHHHH-----CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH
T ss_pred             CccccccccccccccchhhHH-----HHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccc
Confidence            9999986 454332221 111     33444444321              13578999999875  3433333334567


Q ss_pred             CCCccEEEccCC-ccccccCCCCCCCCCccEEEcCCC-CCCCCCCchhhhccc
Q 037699          152 LSKLKYFDVSQN-SLTLNVSPDWIPPFQLKELNLESC-NLVGNRFPSWLLSQK  202 (203)
Q Consensus       152 ~~~L~~L~l~~n-~~~~~~~~~l~~~~~L~~L~l~~n-~l~~~~~p~~~~~~~  202 (203)
                      +++|++|++++| .+++.....+..+++|++|++++| .+ ++.....+.+++
T Consensus       174 ~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i-~~~~l~~L~~~~  225 (284)
T d2astb2         174 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI-IPETLLELGEIP  225 (284)
T ss_dssp             CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC-CGGGGGGGGGCT
T ss_pred             cccccccccccccCCCchhhhhhcccCcCCEEECCCCCCC-ChHHHHHHhcCC
Confidence            899999999987 577666677888999999999996 46 444555566654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.43  E-value=2.4e-15  Score=102.85  Aligned_cols=149  Identities=20%  Similarity=0.186  Sum_probs=107.9

Q ss_pred             cccEEecCCCc--cCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCC
Q 037699           10 HLVFLDLSLNN--FQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCK   87 (203)
Q Consensus        10 ~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~   87 (203)
                      .++.+++++..  +. .++..+..+.+|++|++++|.     +.. ++ .+..+++|++|++++|.++ .++..+..++.
T Consensus        24 ~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~-----I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~   94 (198)
T d1m9la_          24 EAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNN-----IEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT   94 (198)
T ss_dssp             TCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEE-----ESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHH
T ss_pred             ccceeeeecccCchh-hhhhHHhcccccceeECcccC-----CCC-cc-cccCCccccChhhcccccc-ccccccccccc
Confidence            34556665542  22 455678889999999999986     544 33 4778899999999999987 56666666778


Q ss_pred             ccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCcccc
Q 037699           88 LRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTL  167 (203)
Q Consensus        88 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~  167 (203)
                      |++|++++|.+.... . +.                  .+++|+.|++++|.+.+......+..+++|+.|++++|.+..
T Consensus        95 L~~L~l~~N~i~~l~-~-~~------------------~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_          95 LEELWISYNQIASLS-G-IE------------------KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             CCEEECSEEECCCHH-H-HH------------------HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             ccccccccccccccc-c-cc------------------ccccccccccccchhccccccccccCCCccceeecCCCcccc
Confidence            999999999887532 1 22                  467899999999998632222367889999999999999875


Q ss_pred             ccCCC----------CCCCCCccEEEcCCCCC
Q 037699          168 NVSPD----------WIPPFQLKELNLESCNL  189 (203)
Q Consensus       168 ~~~~~----------l~~~~~L~~L~l~~n~l  189 (203)
                      ..+..          +..+++|+.||  +..+
T Consensus       155 ~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I  184 (198)
T d1m9la_         155 DYKENNATSEYRIEVVKRLPNLKKLD--GMPV  184 (198)
T ss_dssp             HHCTTTTHHHHHHHHHHHCSSCCEES--SGGG
T ss_pred             CcccccchhhHHHHHHHHCCCcCEeC--CccC
Confidence            44332          34578899876  4445

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.7e-12  Score=84.14  Aligned_cols=50  Identities=12%  Similarity=0.123  Sum_probs=25.0

Q ss_pred             ccccCCCCCCCEEEcccc-ccCccchhhhhccCCccEEEccCCcCCcchhh
Q 037699           55 SSSVGNLTSIQTLDLSFN-NLEGKIATSFGRLCKLRSVFLSHSNMNQEISK  104 (203)
Q Consensus        55 ~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  104 (203)
                      |..+..+++++.|++.++ .++...+..|..+++|+.|++++|.+....+.
T Consensus        24 p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~   74 (156)
T d2ifga3          24 LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD   74 (156)
T ss_dssp             TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT
T ss_pred             cccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccc
Confidence            444555555666665443 24433334455555555555555555444333

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3.3e-12  Score=89.60  Aligned_cols=177  Identities=19%  Similarity=0.119  Sum_probs=117.6

Q ss_pred             ccccCCcccEEecCCCccCCC-CCccccCCCCccEEeCCC-CcccccccccccccccCCCCCCCEEEccccccCccch-h
Q 037699            4 VFGLSDHLVFLDLSLNNFQGP-IPRGLGNLTSLRYLDLSA-NISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIA-T   80 (203)
Q Consensus         4 ~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~   80 (203)
                      .|..+++|+++++++|.+... .+..+..+..++++.+.. +.     .....+..+.++++|++++++++.+....+ .
T Consensus        48 ~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~-----l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~  122 (242)
T d1xwdc1          48 AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN-----LLYINPEAFQNLPNLQYLLISNTGIKHLPDVH  122 (242)
T ss_dssp             TTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTT-----CCEECTTSEECCTTCCEEEEESCCCCSCCCCT
T ss_pred             Hhhccchhhhhhhccccccceeecccccccccccccccccccc-----ccccccccccccccccccccchhhhccccccc
Confidence            567777999999999988753 456788899999998765 43     666777888999999999999998873322 2


Q ss_pred             hhhccCCccEEEccCCcCCcchhhhhhhcc----ccccC--CccccccccccCCCCCEEE-ccCCccccccchhhhccCC
Q 037699           81 SFGRLCKLRSVFLSHSNMNQEISKILNIFS----TCILD--GLEVLEMTEWQLSSLDSVN-LSNNTLFGSLFEIHFAKLS  153 (203)
Q Consensus        81 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~----~~~~~--~l~~l~~~~~~~~~L~~L~-l~~n~l~~~~~~~~l~~~~  153 (203)
                      .+..+..+..+....+.+.......+....    ...+.  .+..+.......+++..+. +++|.++ .++...|.+++
T Consensus       123 ~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~-~l~~~~f~~l~  201 (242)
T d1xwdc1         123 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLE-ELPNDVFHGAS  201 (242)
T ss_dssp             TTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCC-CCCTTTTTTSC
T ss_pred             ccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhccccccccccc-cccHHHhcCCC
Confidence            334455666666666665544333322111    11111  2222222233455555554 5667775 66665788999


Q ss_pred             CccEEEccCCccccccCCCCCCCCCccEEEcCC
Q 037699          154 KLKYFDVSQNSLTLNVSPDWIPPFQLKELNLES  186 (203)
Q Consensus       154 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~  186 (203)
                      +|+.|++++|+++...+..+..+++|+.+++.+
T Consensus       202 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         202 GPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             CCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             CCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            999999999999855455677777777766654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=5.4e-12  Score=82.65  Aligned_cols=108  Identities=18%  Similarity=0.068  Sum_probs=88.1

Q ss_pred             cccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCcc
Q 037699           10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLR   89 (203)
Q Consensus        10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~   89 (203)
                      ..+.++.+++.+. ..|..+..++++++|+++++.    .+....+..|..+++|+.|++++|.++...+..|..+++|+
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~----~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~   83 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQ----HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS   83 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCS----SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCc----cccccCchhhccccccCcceeeccccCCccccccccccccc
Confidence            4567888888887 577788899999999997653    15556667799999999999999999966678899999999


Q ss_pred             EEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccc
Q 037699           90 SVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLF  141 (203)
Q Consensus        90 ~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~  141 (203)
                      +|++++|.+....+..+.                   ...++.|++++|.+.
T Consensus        84 ~L~Ls~N~l~~l~~~~~~-------------------~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          84 RLNLSFNALESLSWKTVQ-------------------GLSLQELVLSGNPLH  116 (156)
T ss_dssp             EEECCSSCCSCCCSTTTC-------------------SCCCCEEECCSSCCC
T ss_pred             ceeccCCCCcccChhhhc-------------------cccccccccCCCccc
Confidence            999999999865554442                   346899999999884

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.33  E-value=3.6e-11  Score=88.39  Aligned_cols=59  Identities=36%  Similarity=0.446  Sum_probs=42.5

Q ss_pred             CCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCch
Q 037699          127 LSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPS  196 (203)
Q Consensus       127 ~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~  196 (203)
                      +++|++|++++|.+. .++.    .+++|+.|++++|+++ .+++.   +.+|++|++++|++  ..+|.
T Consensus       283 ~~~L~~L~Ls~N~l~-~lp~----~~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L--~~lp~  341 (353)
T d1jl5a_         283 PPSLEELNVSNNKLI-ELPA----LPPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPL--REFPD  341 (353)
T ss_dssp             CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCC--SSCCC
T ss_pred             CCCCCEEECCCCccC-cccc----ccCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcC--CCCCc
Confidence            357888888888875 4543    4678888888888887 44432   35789999999998  44554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.31  E-value=4.5e-14  Score=96.44  Aligned_cols=133  Identities=23%  Similarity=0.364  Sum_probs=99.8

Q ss_pred             ccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhh
Q 037699            4 VFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFG   83 (203)
Q Consensus         4 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~   83 (203)
                      .+..+++|+.|++++|.++. ++ .+..+++|+.|++++|.     +. .++.....++.|++|++++|.++. + ..+.
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~-----i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~  112 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNL-----IK-KIENLDAVADTLEELWISYNQIAS-L-SGIE  112 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEE-----EC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHH
T ss_pred             HHhcccccceeECcccCCCC-cc-cccCCccccChhhcccc-----cc-cccccccccccccccccccccccc-c-cccc
Confidence            35556799999999999984 44 58899999999999995     43 345544455689999999999983 3 4588


Q ss_pred             ccCCccEEEccCCcCCcchh-hhhhhccccccCCccccccccccCCCCCEEEccCCccccccch---------hhhccCC
Q 037699           84 RLCKLRSVFLSHSNMNQEIS-KILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFE---------IHFAKLS  153 (203)
Q Consensus        84 ~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~---------~~l~~~~  153 (203)
                      .+++|++|++++|.+..... ..+.                  .+++|+.|++++|.+....+.         ..+..++
T Consensus       113 ~l~~L~~L~L~~N~i~~~~~~~~l~------------------~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp  174 (198)
T d1m9la_         113 KLVNLRVLYMSNNKITNWGEIDKLA------------------ALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP  174 (198)
T ss_dssp             HHHHSSEEEESEEECCCHHHHHHHT------------------TTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCS
T ss_pred             ccccccccccccchhcccccccccc------------------CCCccceeecCCCccccCcccccchhhHHHHHHHHCC
Confidence            89999999999999876432 2333                  688999999999987532221         1256789


Q ss_pred             CccEEEccCCccc
Q 037699          154 KLKYFDVSQNSLT  166 (203)
Q Consensus       154 ~L~~L~l~~n~~~  166 (203)
                      +|+.||  +..++
T Consensus       175 ~L~~LD--~~~I~  185 (198)
T d1m9la_         175 NLKKLD--GMPVD  185 (198)
T ss_dssp             SCCEES--SGGGT
T ss_pred             CcCEeC--CccCC
Confidence            999987  44444

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.15  E-value=2.4e-12  Score=95.01  Aligned_cols=182  Identities=20%  Similarity=0.134  Sum_probs=104.5

Q ss_pred             ccCCcccEEecCCCccCCC----CCccccCCCCccEEeCCCCccccccccccccc---------ccCCCCCCCEEEcccc
Q 037699            6 GLSDHLVFLDLSLNNFQGP----IPRGLGNLTSLRYLDLSANISILQYLSGTFSS---------SVGNLTSIQTLDLSFN   72 (203)
Q Consensus         6 ~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~---------~l~~~~~L~~L~l~~~   72 (203)
                      ...++|+.|++++|.++..    +...+...++|++|++++|....+. ...+..         .....+.++.+.+++|
T Consensus        90 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~-~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n  168 (344)
T d2ca6a1          90 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA-GAKIARALQELAVNKKAKNAPPLRSIICGRN  168 (344)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH-HHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             hhCCCcccccccccccccccccchhhhhcccccchheecccccccccc-cccccccccccccccccccCcccceeecccc
Confidence            3456899999999988754    3344556788999999988521110 000001         1124556777777777


Q ss_pred             ccCcc----chhhhhccCCccEEEccCCcCCcchhhh-h-hhccccccCCcccccccc---------------ccCCCCC
Q 037699           73 NLEGK----IATSFGRLCKLRSVFLSHSNMNQEISKI-L-NIFSTCILDGLEVLEMTE---------------WQLSSLD  131 (203)
Q Consensus        73 ~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~-~~~~~~~~~~l~~l~~~~---------------~~~~~L~  131 (203)
                      .++..    +...+...+.++.+++++|.+....... . ..+.  ....++.+.+..               ..+++|+
T Consensus       169 ~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~--~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~  246 (344)
T d2ca6a1         169 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA--YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR  246 (344)
T ss_dssp             CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG--GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCC
T ss_pred             cccccccccccchhhhhhhhcccccccccccccccccchhhhhc--chhhhcccccccccccccccccccccccccccch
Confidence            66532    2333455667777777777765432111 1 1010  122222222110               1567888


Q ss_pred             EEEccCCccccccchh---hhcc--CCCccEEEccCCcccccc----CCCCC-CCCCccEEEcCCCCCC
Q 037699          132 SVNLSNNTLFGSLFEI---HFAK--LSKLKYFDVSQNSLTLNV----SPDWI-PPFQLKELNLESCNLV  190 (203)
Q Consensus       132 ~L~l~~n~l~~~~~~~---~l~~--~~~L~~L~l~~n~~~~~~----~~~l~-~~~~L~~L~l~~n~l~  190 (203)
                      +|++++|.+.+.....   .+..  ...++.|++++|.++...    ...+. ..+.|+.|++++|.+.
T Consensus       247 ~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         247 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             hhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            9999998886432221   2222  356888999999886432    22222 3567899999999884

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.13  E-value=2.1e-11  Score=89.88  Aligned_cols=183  Identities=16%  Similarity=0.111  Sum_probs=114.9

Q ss_pred             cccCCcccEEecCCCccCCC----------CCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEcccccc
Q 037699            5 FGLSDHLVFLDLSLNNFQGP----------IPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNL   74 (203)
Q Consensus         5 ~~~~~~L~~L~l~~~~~~~~----------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~   74 (203)
                      +...+.|+.++++++.....          +...+...++|++|++++|.... .....+...+...++|++|++++|.+
T Consensus        55 l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~-~~~~~l~~~l~~~~~L~~L~l~~n~l  133 (344)
T d2ca6a1          55 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP-TAQEPLIDFLSKHTPLEHLYLHNNGL  133 (344)
T ss_dssp             TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT-TTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             HHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccc-ccccchhhhhcccccchheecccccc
Confidence            44567999999998765421          22345677899999999996111 11222444556788999999999987


Q ss_pred             Cccchh----h---------hhccCCccEEEccCCcCCcchhhhhh-hccccccCCccccccc----------------c
Q 037699           75 EGKIAT----S---------FGRLCKLRSVFLSHSNMNQEISKILN-IFSTCILDGLEVLEMT----------------E  124 (203)
Q Consensus        75 ~~~~~~----~---------~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~~~~~~l~~l~~~----------------~  124 (203)
                      ......    .         ....+.++.+++++|.+.......+. .+..  ...++.+.+.                .
T Consensus       134 ~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~--~~~L~~L~L~~n~i~~~g~~~~l~~~l  211 (344)
T d2ca6a1         134 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS--HRLLHTVKMVQNGIRPEGIEHLLLEGL  211 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH--CTTCCEEECCSSCCCHHHHHHHHHTTG
T ss_pred             cccccccccccccccccccccccCcccceeecccccccccccccccchhhh--hhhhcccccccccccccccccchhhhh
Confidence            632111    1         13457899999999988755433322 1111  1222222211                1


Q ss_pred             ccCCCCCEEEccCCccccccc---hhhhccCCCccEEEccCCccccccCC----CCC--CCCCccEEEcCCCCCC
Q 037699          125 WQLSSLDSVNLSNNTLFGSLF---EIHFAKLSKLKYFDVSQNSLTLNVSP----DWI--PPFQLKELNLESCNLV  190 (203)
Q Consensus       125 ~~~~~L~~L~l~~n~l~~~~~---~~~l~~~~~L~~L~l~~n~~~~~~~~----~l~--~~~~L~~L~l~~n~l~  190 (203)
                      ...++|+.|++++|.+.+...   ...+..++.|+.|++++|.++.....    .+.  ..+.|++|++++|.|.
T Consensus       212 ~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         212 AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             cchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCC
Confidence            156789999999998754321   12456788899999999988753222    222  2357899999999883

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.1e-10  Score=88.53  Aligned_cols=163  Identities=17%  Similarity=0.092  Sum_probs=98.1

Q ss_pred             CCcccEEecCCCccCCC----CCccccCCCCccEEeCCCCcccccccccc----cccc-cCCCCCCCEEEccccccCccc
Q 037699            8 SDHLVFLDLSLNNFQGP----IPRGLGNLTSLRYLDLSANISILQYLSGT----FSSS-VGNLTSIQTLDLSFNNLEGKI   78 (203)
Q Consensus         8 ~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~----~~~~-l~~~~~L~~L~l~~~~~~~~~   78 (203)
                      ...++.+++++|.+...    ....+.....++.+++++|.     +...    +... ......|+.+++++|.++...
T Consensus       254 ~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~-----i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~  328 (460)
T d1z7xw1         254 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-----LGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC  328 (460)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-----CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc-----ccccccchhhccccccccccccccccccchhhhh
Confidence            34677777777765522    22233456667777777775     3221    1111 123456888888888776443


Q ss_pred             hh----hhhccCCccEEEccCCcCCcchhhhhh-hccccccCCccccccccccCCCCCEEEccCCccccccc---hhhhc
Q 037699           79 AT----SFGRLCKLRSVFLSHSNMNQEISKILN-IFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLF---EIHFA  150 (203)
Q Consensus        79 ~~----~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~---~~~l~  150 (203)
                      ..    .+...++|++|++++|.+.......+. .+..              ..+.|+.|++++|.+++...   ...+.
T Consensus       329 ~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~--------------~~~~L~~L~Ls~n~i~~~~~~~l~~~l~  394 (460)
T d1z7xw1         329 CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ--------------PGSVLRVLWLADCDVSDSSCSSLAATLL  394 (460)
T ss_dssp             HHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTS--------------TTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred             hhhcccccccccchhhhheeeecccCcccchhhhhhhc--------------ccCCCCEEECCCCCCChHHHHHHHHHHh
Confidence            22    334556788888888877654332221 1100              34678999999998864321   12456


Q ss_pred             cCCCccEEEccCCccccccCCC----CC-CCCCccEEEcCCCCC
Q 037699          151 KLSKLKYFDVSQNSLTLNVSPD----WI-PPFQLKELNLESCNL  189 (203)
Q Consensus       151 ~~~~L~~L~l~~n~~~~~~~~~----l~-~~~~L~~L~l~~n~l  189 (203)
                      .+++|++|++++|.++......    +. ....|+.|++.+|.+
T Consensus       395 ~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~  438 (460)
T d1z7xw1         395 ANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW  438 (460)
T ss_dssp             HCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred             cCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCC
Confidence            7789999999999987532221    22 234689999999888

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.85  E-value=7.2e-08  Score=70.28  Aligned_cols=74  Identities=20%  Similarity=0.192  Sum_probs=54.6

Q ss_pred             cccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCcc
Q 037699           10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLR   89 (203)
Q Consensus        10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~   89 (203)
                      ++++|+++++.++ .+|+.   .++|++|++++|.     +. .+|..   ..+|+.|++.+|.++ .++.   -.+.|+
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~-----l~-~lp~~---~~~L~~L~l~~n~l~-~l~~---lp~~L~  101 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNS-----LT-ELPEL---PQSLKSLLVDNNNLK-ALSD---LPPLLE  101 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSC-----CS-SCCCC---CTTCCEEECCSSCCS-CCCS---CCTTCC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCC-----Cc-ccccc---hhhhhhhhhhhcccc-hhhh---hccccc
Confidence            6889999999988 56753   5688999999985     44 45654   347889999998887 3322   124689


Q ss_pred             EEEccCCcCCc
Q 037699           90 SVFLSHSNMNQ  100 (203)
Q Consensus        90 ~L~l~~n~~~~  100 (203)
                      +|++++|.+..
T Consensus       102 ~L~L~~n~l~~  112 (353)
T d1jl5a_         102 YLGVSNNQLEK  112 (353)
T ss_dssp             EEECCSSCCSS
T ss_pred             ccccccccccc
Confidence            99999988764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=6.8e-09  Score=78.42  Aligned_cols=115  Identities=18%  Similarity=0.182  Sum_probs=74.1

Q ss_pred             CccEEeCCCCcccccccccc-cccccCCCCCCCEEEccccccCc----cchhhhhccCCccEEEccCCcCCcchhhhhh-
Q 037699           34 SLRYLDLSANISILQYLSGT-FSSSVGNLTSIQTLDLSFNNLEG----KIATSFGRLCKLRSVFLSHSNMNQEISKILN-  107 (203)
Q Consensus        34 ~L~~L~l~~~~~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-  107 (203)
                      +|+.|+++.+.     +.+. +...+..++++++|++.+|.++.    .++..+..+++|++|++++|.+.......+. 
T Consensus         3 ~l~~ld~~~~~-----i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~   77 (460)
T d1z7xw1           3 DIQSLDIQCEE-----LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ   77 (460)
T ss_dssp             EEEEEEEESCC-----CCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred             CCCEEEeeCCc-----CChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHH
Confidence            57888888886     4332 23334556778888888888773    3345567778888888888877643332221 


Q ss_pred             hccccccCCccccccccccCCCCCEEEccCCccccccc---hhhhccCCCccEEEccCCcccc
Q 037699          108 IFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLF---EIHFAKLSKLKYFDVSQNSLTL  167 (203)
Q Consensus       108 ~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~---~~~l~~~~~L~~L~l~~n~~~~  167 (203)
                      .+..              ...+|+.|++++|.+++...   ...+..+++|+.|++++|.++.
T Consensus        78 ~l~~--------------~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          78 GLQT--------------PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TTCS--------------TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             HHhc--------------CCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            1100              23468888888888764321   1245667888888888888764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=1.4e-08  Score=66.42  Aligned_cols=41  Identities=34%  Similarity=0.228  Sum_probs=21.0

Q ss_pred             cCCCCCEEEccCCccccccchhhhccCCCccEEEccCCcccc
Q 037699          126 QLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTL  167 (203)
Q Consensus       126 ~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~  167 (203)
                      .+++|+.|++++|.+. +++.........++.+++++|.+..
T Consensus        89 ~l~~L~~L~Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          89 KAPNLKILNLSGNELK-SERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HSTTCCCCCCTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             hCCcccccccccCccc-cchhhhhhhccccceeecCCCCcCc
Confidence            3556666666666664 2222122233346666666666653

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.47  E-value=3.7e-07  Score=59.74  Aligned_cols=118  Identities=12%  Similarity=0.053  Sum_probs=60.2

Q ss_pred             CCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCc----cchhhhhccCCccEEEccCCcCCcchhhhhh
Q 037699           32 LTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEG----KIATSFGRLCKLRSVFLSHSNMNQEISKILN  107 (203)
Q Consensus        32 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  107 (203)
                      .+.|++|+++++..........+...+...+.|++|++++|.+..    .+...+...+.|++|++++|.+.......+.
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            355666666653211111222234445566667777777776652    2333445566777777777776654433221


Q ss_pred             -hccccccCCccccccccccCCCCCEEEccCCccccc---c---chhhhccCCCccEEEccCCc
Q 037699          108 -IFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGS---L---FEIHFAKLSKLKYFDVSQNS  164 (203)
Q Consensus       108 -~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~---~---~~~~l~~~~~L~~L~l~~n~  164 (203)
                       .+.               ..++|++|++++|.....   .   ....+...+.|+.|+++.+.
T Consensus        94 ~aL~---------------~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          94 RSTL---------------VTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHTT---------------TTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHH---------------hCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence             111               345677777766643210   0   11133445566666665543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=2.8e-08  Score=64.97  Aligned_cols=87  Identities=20%  Similarity=0.163  Sum_probs=62.7

Q ss_pred             ccccCCCCCCCEEEccccccCcc--chhhhhccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCE
Q 037699           55 SSSVGNLTSIQTLDLSFNNLEGK--IATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDS  132 (203)
Q Consensus        55 ~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~  132 (203)
                      +.....++.|++|++++|.++..  ++..+..+++|+.|++++|.+.....-...                  ....++.
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l------------------~~~~L~~  119 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKI------------------KGLKLEE  119 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHH------------------TTCCCSS
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhh------------------hccccce
Confidence            33345688999999999999843  346678899999999999999865432211                  3456899


Q ss_pred             EEccCCccccccc------hhhhccCCCccEEE
Q 037699          133 VNLSNNTLFGSLF------EIHFAKLSKLKYFD  159 (203)
Q Consensus       133 L~l~~n~l~~~~~------~~~l~~~~~L~~L~  159 (203)
                      +++++|.+.....      ...+..+++|+.||
T Consensus       120 L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         120 LWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             CCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             eecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            9999998864322      12356788888875

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.12  E-value=1.1e-06  Score=57.39  Aligned_cols=116  Identities=9%  Similarity=0.069  Sum_probs=78.7

Q ss_pred             CCCCCCCEEEcccc-ccCcc----chhhhhccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEE
Q 037699           59 GNLTSIQTLDLSFN-NLEGK----IATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSV  133 (203)
Q Consensus        59 ~~~~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L  133 (203)
                      ...+.|+.|+++++ .++..    +...+...+.|++|++++|.+.......++....              ..+.|+.|
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~--------------~n~~L~~L   77 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIE--------------TSPSLRVL   77 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHH--------------HCSSCCEE
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhh--------------hcccccce
Confidence            45678999999874 46532    3445666788999999999887654433321100              45789999


Q ss_pred             EccCCccccccch---hhhccCCCccEEEccCCccccc-------cCCCCCCCCCccEEEcCCCC
Q 037699          134 NLSNNTLFGSLFE---IHFAKLSKLKYFDVSQNSLTLN-------VSPDWIPPFQLKELNLESCN  188 (203)
Q Consensus       134 ~l~~n~l~~~~~~---~~l~~~~~L~~L~l~~n~~~~~-------~~~~l~~~~~L~~L~l~~n~  188 (203)
                      ++++|.+.+....   ..+...+.|+.|++++|.+...       +...+...++|+.|+++.+.
T Consensus        78 ~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          78 NVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             ECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             eeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            9999998654322   2456667899999998865421       23344557789999987654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.11  E-value=2.6e-06  Score=55.49  Aligned_cols=72  Identities=11%  Similarity=0.053  Sum_probs=38.9

Q ss_pred             CCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCcc----chhhhhccCCccEEEccCCcCCcch
Q 037699           31 NLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGK----IATSFGRLCKLRSVFLSHSNMNQEI  102 (203)
Q Consensus        31 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~  102 (203)
                      ..+.|++|+++++..........+...+...++|++|++++|.++..    +...+...+.++.+++.++.+....
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g   90 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG   90 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchh
Confidence            44566666666532111122233444455666677777777766532    2334445566777777776665443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.81  E-value=3.5e-06  Score=54.82  Aligned_cols=122  Identities=13%  Similarity=0.093  Sum_probs=81.6

Q ss_pred             cccccCCCCCCCEEEccc-cccCc----cchhhhhccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCC
Q 037699           54 FSSSVGNLTSIQTLDLSF-NNLEG----KIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLS  128 (203)
Q Consensus        54 ~~~~l~~~~~L~~L~l~~-~~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~  128 (203)
                      +.....+.+.|++|++++ +.++.    .+...+...+.|++|++++|.+.......+.....              ..+
T Consensus         9 l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~--------------~~~   74 (166)
T d1io0a_           9 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLK--------------VNN   74 (166)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHH--------------HCS
T ss_pred             HHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHh--------------hcc
Confidence            334445678999999997 45663    23445667889999999999987655443321111              457


Q ss_pred             CCCEEEccCCccccccch---hhhccCCCccEEEc--cCCccccc----cCCCCCCCCCccEEEcCCCCC
Q 037699          129 SLDSVNLSNNTLFGSLFE---IHFAKLSKLKYFDV--SQNSLTLN----VSPDWIPPFQLKELNLESCNL  189 (203)
Q Consensus       129 ~L~~L~l~~n~l~~~~~~---~~l~~~~~L~~L~l--~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l  189 (203)
                      .++.+++++|.+.+....   ..+...+.++.++|  ++|.+...    +.+.+...+.|+.|++..+..
T Consensus        75 ~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          75 TLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             SCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             cchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            899999999988644322   24567788887666  45666532    233445677899999987654