Citrus Sinensis ID: 037703

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------48
MDKGLLGKDEVESREDLTVLLAKDEVECEEDLTVVMADVYIDEVKRLGSIAGPMVAVNLSQYFLQVISVMMVGHLGELFLSSTAIAISFSAVTGFSLLCFRLLYFLLQASCSYRIVARPISQQYRKLGTQMHTAMFCLLLACLPVSLLWANMGKLLILMGQDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQVQSLVTPMLISSCATVFFHIILCWALVLKFELNNIGAALAIGTSYWLNVLLLGLYMTFSSACAQTRVQVSMELFQGIKEFFLLAIPSAFMVCLEWWSFEFLTLLSGLLPNPELEASVLSVCLATITTLFTIPDGLGAAASTRVSNALGAGNPQAAIIAVRAVLFLTVLETVVVSSILYASRHVFGYIFSNDQEVVDYVTSMAPLICLCVILNGLQAVLSEGGSQNLGAYANLTAYYHFGIPVAAALGFWLKMRGEGLWIGIQVGAFVQIVLLFLITSCQNWKKQ
ccccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHEEEHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccc
ccccccccccccccccccccHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccHHHHccccHHHHHEEEEHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccc
mdkgllgkdevesREDLTVLLAKDEVECEEDLTVVMADVYIDEVKRLGSIAGPMVAVNLSQYFLQVISVMMVGHLGELFLSSTAIAISFSAVTGFSLLCFRLLYFLLQASCSYRIVARPISQQYRKLGTQMHTAMFCLLLACLPVSLLWANMGKLLILmgqdpaisseagkFTVWLIPalfgygtlqplVRYLQVQSLVTPMLISSCATVFFHIILCWALVLKFELNNIGAALAIGTSYWLNVLLLGLYMTFSSACAQTRVQVSMELFQGIKEFFLLAIPSAFMVCLEWWSFEFLTLLsgllpnpeleASVLSVCLATITtlftipdglgaaaSTRVsnalgagnpQAAIIAVRAVLFLTVLETVVVSSILYASRHVFGYIFSNDQEVVDYVTSMAPLICLCVILNGLQAVlseggsqnlgayANLTAYYHFGIPVAAALGFWLKMRGEGLWIGIQVGAFVQIVLLFLITSCQNWKKQ
mdkgllgkdevesredltvllakdeveceedlTVVMADVYIDEVKRLGSIAGPMVAVNLSQYFLQVISVMMVGHLGELFLSSTAIAISFSAVTGFSLLCFRLLYFLLQASCSYRIVARPISQQYRKLGTQMHTAMFCLLLACLPVSLLWANMGKLLILMGQDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQVQSLVTPMLISSCATVFFHIILCWALVLKFELNNIGAALAIGTSYWLNVLLLGLYMTFSSACAQTRVQVSMELFQGIKEFFLLAIPSAFMVCLEWWSFEFLTLLSGLLPNPELEASVLSVCLATITTLFTIPDGLGAAASTRVSNALGAGNPQAAIIAVRAVLFLTVLETVVVSSILYASRHVFGYIFSNDQEVVDYVTSMAPLICLCVILNGLQAVLSEGGSQNLGAYANLTAYYHFGIPVAAALGFWLKMRGEGLWIGIQVGAFVQIVLLFLITscqnwkkq
MDKGLLGKDEVESREDLTVLLAKDEVECEEDLTVVMADVYIDEVKRLGSIAGPMVAVNLSQYFLQVISVMMVGHLGELFLSSTAIAISFSAVTGfsllcfrllyfllQASCSYRIVARPISQQYRKLGTQMHTAMFClllaclpvsllWANMGKLLILMGQDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQVQSLVTPMLISSCATVFFHIILCWALVLKFELNNIGAALAIGTSYWLNVLLLGLYMTFSSACAQTRVQVSMELFQGIKEFFLLAIPSAFMVCLEWWSFEFLTLLSGLLPNPELEASVLSVCLATITTLFTIPDGLGAAASTRVSNALGAGNPQAAIIAVRAvlfltvletvvvSSILYASRHVFGYIFSNDQEVVDYVTSMAPLICLCVILNGLQAVLSEGGSQNLGAYANLTAYYHFGIPVAAALGFWLKMRGEGLWIGIQVGAFVQIVLLFLITSCQNWKKQ
****************LTVLLAKDEVECEEDLTVVMADVYIDEVKRLGSIAGPMVAVNLSQYFLQVISVMMVGHLGELFLSSTAIAISFSAVTGFSLLCFRLLYFLLQASCSYRIVARPISQQYRKLGTQMHTAMFCLLLACLPVSLLWANMGKLLILMGQDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQVQSLVTPMLISSCATVFFHIILCWALVLKFELNNIGAALAIGTSYWLNVLLLGLYMTFSSACAQTRVQVSMELFQGIKEFFLLAIPSAFMVCLEWWSFEFLTLLSGLLPNPELEASVLSVCLATITTLFTIPDGLGAAASTRVSNALGAGNPQAAIIAVRAVLFLTVLETVVVSSILYASRHVFGYIFSNDQEVVDYVTSMAPLICLCVILNGLQAVLSEGGSQNLGAYANLTAYYHFGIPVAAALGFWLKMRGEGLWIGIQVGAFVQIVLLFLITSCQNW***
**********************************VMADVYIDEVKRLGSIAGPMVAVNLSQYFLQVISVMMVGHLGELFLSSTAIAISFSAVTGFSLLCFRLLYFLLQASCSYRIVARPISQQYRKLGTQMHTAMFCLLLACLPVSLLWANMGKLLILMGQDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQVQSLVTPMLISSCATVFFHIILCWALVLKFELNNIGAALAIGTSYWLNVLLLGLYMTFSSACAQTRVQVSMELFQGIKEFFLLAIPSAFMVCLEWWSFEFLTLLSGLLPNPELEASVLSVCLATITTLFTIPDGLGAAASTRVSNALGAGNPQAAIIAVRAVLFLTVLETVVVSSILYASRHVFGYIFSNDQEVVDYVTSMAPLICLCVILNGLQAVLSEGGSQNLGAYANLTAYYHFGIPVAAALGFWLKMRGEGLWIGIQVGAFVQIVLLFLITSCQNWKK*
MDKGLLGKDEVESREDLTVLLAKDEVECEEDLTVVMADVYIDEVKRLGSIAGPMVAVNLSQYFLQVISVMMVGHLGELFLSSTAIAISFSAVTGFSLLCFRLLYFLLQASCSYRIVARPISQQYRKLGTQMHTAMFCLLLACLPVSLLWANMGKLLILMGQDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQVQSLVTPMLISSCATVFFHIILCWALVLKFELNNIGAALAIGTSYWLNVLLLGLYMTFSSACAQTRVQVSMELFQGIKEFFLLAIPSAFMVCLEWWSFEFLTLLSGLLPNPELEASVLSVCLATITTLFTIPDGLGAAASTRVSNALGAGNPQAAIIAVRAVLFLTVLETVVVSSILYASRHVFGYIFSNDQEVVDYVTSMAPLICLCVILNGLQAVLSEGGSQNLGAYANLTAYYHFGIPVAAALGFWLKMRGEGLWIGIQVGAFVQIVLLFLITSCQNWKKQ
******************************DLTVVMADVYIDEVKRLGSIAGPMVAVNLSQYFLQVISVMMVGHLGELFLSSTAIAISFSAVTGFSLLCFRLLYFLLQASCSYRIVARPISQQYRKLGTQMHTAMFCLLLACLPVSLLWANMGKLLILMGQDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQVQSLVTPMLISSCATVFFHIILCWALVLKFELNNIGAALAIGTSYWLNVLLLGLYMTFSSACAQTRVQVSMELFQGIKEFFLLAIPSAFMVCLEWWSFEFLTLLSGLLPNPELEASVLSVCLATITTLFTIPDGLGAAASTRVSNALGAGNPQAAIIAVRAVLFLTVLETVVVSSILYASRHVFGYIFSNDQEVVDYVTSMAPLICLCVILNGLQAVLSEGGSQNLGAYANLTAYYHFGIPVAAALGFWLKMRGEGLWIGIQVGAFVQIVLLFLITSCQNWK**
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MDKGLLGKDEVESREDLTVLLAKDEVECEEDLTVVMADVYIDEVKRLGSIAGPMVAVNLSQYFLQVISVMMVGHLGELFLSSTAIAISFSAVTGFSLLCFRLLYFLLQASCSYRIVARPISQQYRKLGTQMHTAMFCLLLACLPVSLLWANMGKLLILMGQDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQVQSLVTPMLISSCATVFFHIILCWALVLKFELNNIGAALAIGTSYWLNVLLLGLYMTFSSACAQTRVQVSMELFQGIKEFFLLAIPSAFMVCLEWWSFEFLTLLSGLLPNPELEASVLSVCLATITTLFTIPDGLGAAASTRVSNALGAGNPQAAIIAVRAVLFLTVLETVVVSSILYASRHVFGYIFSNDQEVVDYVTSMAPLICLCVILNGLQAVLSEGGSQNLGAYANLTAYYHFGIPVAAALGFWLKMRGEGLWIGIQVGAFVQIVLLFLITSCQNWKKQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query478 2.2.26 [Sep-21-2011]
Q8RWF5483 MATE efflux family protei no no 0.905 0.896 0.480 1e-107
Q9SIA1477 MATE efflux family protei no no 0.905 0.907 0.476 1e-107
Q9SIA5476 MATE efflux family protei no no 0.945 0.949 0.451 1e-105
Q9SIA4476 MATE efflux family protei no no 0.941 0.945 0.468 1e-105
Q8GXM8476 MATE efflux family protei no no 0.941 0.945 0.453 1e-105
Q9SIA3476 MATE efflux family protei no no 0.939 0.943 0.454 1e-102
Q9LUH3469 MATE efflux family protei no no 0.939 0.957 0.344 4e-59
Q9LUH2477 MATE efflux family protei no no 0.956 0.958 0.322 2e-58
Q9LYT3507 Protein TRANSPARENT TESTA no no 0.893 0.842 0.331 8e-58
Q5RFD2 570 Multidrug and toxin extru yes no 0.899 0.754 0.323 3e-49
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1 Back     alignment and function desciption
 Score =  389 bits (1000), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 213/443 (48%), Positives = 285/443 (64%), Gaps = 10/443 (2%)

Query: 40  YIDEVKRLGSIAGPMVAVNLSQYFLQVISVMMVGHLGELFLSSTAIAISFSAVTGFSLLC 99
           +  E+K L  +A PM  V ++QY L VISVM+ GH  EL LS  A+A SF+ V+GFS++ 
Sbjct: 27  FTAELKNLSRMALPMATVTVAQYLLPVISVMVAGHRSELQLSGVALATSFTNVSGFSVMF 86

Query: 100 FRLLYFLLQASCSYRIVARPISQQYRKLGTQMHTAMFCLLLACLPVSLLWANMGKLLILM 159
              L   L+  C     A+    QY K+GT   +A+   +   + +S+LW  M KL + +
Sbjct: 87  G--LAGALETLCGQAYGAK----QYAKIGTYTFSAIVSNVPIVVLISILWFYMDKLFVSL 140

Query: 160 GQDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQVQSLVTPMLISSCATVFFHIILCWA 219
           GQDP IS  AG + V LIPAL      QPL R+LQ Q LV P+L  +  T+ FHI +C  
Sbjct: 141 GQDPDISKVAGSYAVCLIPALLAQAVQQPLTRFLQTQGLVLPLLYCAITTLLFHIPVCLI 200

Query: 220 LVLKFELNNIGAALAIGTSYWLNVLLLGLYMTFSSACAQTRVQVSMELFQGIKEFFLLAI 279
           LV  F L + GAALAIG SYW NVL+L LY+ FSS+C +TR  VS +    +K+FF   I
Sbjct: 201 LVYAFGLGSNGAALAIGLSYWFNVLILALYVRFSSSCEKTRGFVSDDFVLSVKQFFQYGI 260

Query: 280 PSAFMVCLEWWSFEFLTLLSGLLPNPELEASVLSVCLATITTLFTIPDGLGAAASTRVSN 339
           PSA M  +EW  FEFL L SGLLPNP+LE SVLS+CL T +  + IP G+GAA S RVSN
Sbjct: 261 PSAAMTTIEWSLFEFLILSSGLLPNPKLETSVLSICLTTSSLHYVIPMGIGAAGSIRVSN 320

Query: 340 ALGAGNPQAAIIAVRAVLFLTVLETVVVSSILYASRHVFGYIFSNDQEVVDYVTSMAPLI 399
            LGAGNP+ A +AV A +FL  LE  + S++L+  R +FGY FSN +EVVDYVT ++PL+
Sbjct: 321 ELGAGNPEVARLAVFAGIFLWFLEATICSTLLFICRDIFGYAFSNSKEVVDYVTELSPLL 380

Query: 400 CLCVILNGLQAVLS----EGGSQNLGAYANLTAYYHFGIPVAAALGFWLKMRGEGLWIGI 455
           C+  +++G  AVL       G Q++GA+AN+ AYY  G PV   LGFW  M G+GLWIG+
Sbjct: 381 CISFLVDGFSAVLGGVARGSGWQHIGAWANVVAYYLLGAPVGLFLGFWCHMNGKGLWIGV 440

Query: 456 QVGAFVQIVLLFLITSCQNWKKQ 478
            VG+  Q ++L ++T+C +W +Q
Sbjct: 441 VVGSTAQGIILAIVTACMSWNEQ 463

Arabidopsis thaliana (taxid: 3702)
>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2 Back     alignment and function description
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1 Back     alignment and function description
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1 Back     alignment and function description
>sp|Q5RFD2|S47A1_PONAB Multidrug and toxin extrusion protein 1 OS=Pongo abelii GN=SLC47A1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query478
224108371482 predicted protein [Populus trichocarpa] 0.910 0.902 0.647 1e-158
255582923477 TRANSPARENT TESTA 12 protein, putative [ 0.901 0.903 0.634 1e-156
255582915476 TRANSPARENT TESTA 12 protein, putative [ 0.926 0.930 0.637 1e-154
255582919508 TRANSPARENT TESTA 12 protein, putative [ 0.951 0.895 0.606 1e-153
225424132481 PREDICTED: MATE efflux family protein 5 0.949 0.943 0.631 1e-153
147787625481 hypothetical protein VITISV_022104 [Viti 0.949 0.943 0.628 1e-152
449506364485 PREDICTED: LOW QUALITY PROTEIN: MATE eff 0.960 0.946 0.587 1e-149
357444623495 Protein TRANSPARENT TESTA [Medicago trun 0.968 0.935 0.571 1e-149
449434574485 PREDICTED: MATE efflux family protein 7- 0.960 0.946 0.585 1e-148
297838939481 predicted protein [Arabidopsis lyrata su 0.910 0.904 0.584 1e-148
>gi|224108371|ref|XP_002314825.1| predicted protein [Populus trichocarpa] gi|222863865|gb|EEF00996.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  566 bits (1458), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 288/445 (64%), Positives = 346/445 (77%), Gaps = 10/445 (2%)

Query: 38  DVYIDEVKRLGSIAGPMVAVNLSQYFLQVISVMMVGHLGELFLSSTAIAISFSAVTGFSL 97
            V+I EVKRLG IAGPMVAV L+QY LQVIS+MMVGHLGEL LSS A+A+S S VTGFSL
Sbjct: 27  GVFIQEVKRLGYIAGPMVAVILTQYSLQVISMMMVGHLGELALSSAAMALSLSGVTGFSL 86

Query: 98  LCFRLLYFLLQASCSYRIVARPISQQYRKLGTQMHTAMFCLLLACLPVSLLWANMGKLLI 157
           +    +   L+  C     A+    QY+KLGTQ +TA+FCL L C+P+S++W  MGK+L 
Sbjct: 87  M--MGMASALETLCGQAYGAK----QYKKLGTQTYTAIFCLNLVCIPLSVIWIYMGKILH 140

Query: 158 LMGQDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQVQSLVTPMLISSCATVFFHIILC 217
             GQDPAIS EAGKF VWL+PALF Y TLQPLVRY Q QS + PMLISSCAT+ FHI LC
Sbjct: 141 FTGQDPAISHEAGKFIVWLVPALFAYATLQPLVRYFQTQSFIMPMLISSCATLCFHIPLC 200

Query: 218 WALVLKFELNNIGAALAIGTSYWLNVLLLGLYMTFSSACAQTRVQVSMELFQGIKEFFLL 277
           WALV K  L N+G+A+A+G SYWLNV+ LGLY+ +SSACA+TRV +  ELF G+ EFF  
Sbjct: 201 WALVYKSGLKNVGSAVAMGISYWLNVIFLGLYIKYSSACAKTRVPIYKELFYGVGEFFRF 260

Query: 278 AIPSAFMVCLEWWSFEFLTLLSGLLPNPELEASVLSVCLATITTLFTIPDGLGAAASTRV 337
           AIPSA M+CLEWWSFE L LLSG LPNP+LE SVLSVCL TI+TL+ IP GLGAAASTRV
Sbjct: 261 AIPSAVMICLEWWSFELLILLSGFLPNPQLETSVLSVCLMTISTLYGIPFGLGAAASTRV 320

Query: 338 SNALGAGNPQAAIIAVRAVLFLTVLETVVVSSILYASRHVFGYIFSNDQEVVDYVTSMAP 397
           +N LGAGNP+AA +AV A +FL V ET++V+S L+ASR VFGY+FSN++EV+DYVT+MAP
Sbjct: 321 ANELGAGNPRAARLAVYAAMFLAVSETIIVTSALFASRRVFGYLFSNEKEVIDYVTTMAP 380

Query: 398 LICLCVILNGLQAVLS---EG-GSQNLGAYANLTAYYHFGIPVAAALGFWLKMRGEGLWI 453
           L+CL VI++ LQ VLS    G G Q++GAY NL A+Y  GIP AA L FWL + G GLWI
Sbjct: 381 LVCLSVIMDSLQGVLSGVARGCGWQHIGAYINLGAFYLCGIPAAALLAFWLNLGGMGLWI 440

Query: 454 GIQVGAFVQIVLLFLITSCQNWKKQ 478
           GIQ GAF Q +LL ++TSC NW+KQ
Sbjct: 441 GIQTGAFTQTILLSIVTSCTNWEKQ 465

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255582923|ref|XP_002532233.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] gi|223528090|gb|EEF30164.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255582915|ref|XP_002532229.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] gi|223528086|gb|EEF30160.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255582919|ref|XP_002532231.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] gi|223528088|gb|EEF30162.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225424132|ref|XP_002280212.1| PREDICTED: MATE efflux family protein 5 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147787625|emb|CAN78227.1| hypothetical protein VITISV_022104 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449506364|ref|XP_004162729.1| PREDICTED: LOW QUALITY PROTEIN: MATE efflux family protein 7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357444623|ref|XP_003592589.1| Protein TRANSPARENT TESTA [Medicago truncatula] gi|355481637|gb|AES62840.1| Protein TRANSPARENT TESTA [Medicago truncatula] gi|388490870|gb|AFK33501.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|449434574|ref|XP_004135071.1| PREDICTED: MATE efflux family protein 7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297838939|ref|XP_002887351.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297333192|gb|EFH63610.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query478
TAIR|locus:2026311485 AT1G71140 "AT1G71140" [Arabido 0.910 0.896 0.559 2.9e-126
TAIR|locus:2037858481 AT1G15170 "AT1G15170" [Arabido 0.964 0.958 0.490 3.1e-115
TAIR|locus:2037723487 AT1G15150 "AT1G15150" [Arabido 0.899 0.882 0.490 3.5e-114
TAIR|locus:2037848487 AT1G15160 "AT1G15160" [Arabido 0.941 0.924 0.478 1.8e-112
TAIR|locus:2037868482 AT1G15180 "AT1G15180" [Arabido 0.966 0.958 0.479 2.2e-112
TAIR|locus:2050180476 AT2G04050 "AT2G04050" [Arabido 0.939 0.943 0.446 2e-97
TAIR|locus:2050230483 AT2G04100 "AT2G04100" [Arabido 0.899 0.890 0.461 2e-97
TAIR|locus:2010926502 AT1G64820 [Arabidopsis thalian 0.945 0.900 0.431 1.1e-96
TAIR|locus:2050185476 AT2G04080 "AT2G04080" [Arabido 0.937 0.941 0.434 1.2e-95
TAIR|locus:2033334482 AT1G66760 "AT1G66760" [Arabido 0.901 0.894 0.433 5.3e-95
TAIR|locus:2026311 AT1G71140 "AT1G71140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1240 (441.6 bits), Expect = 2.9e-126, P = 2.9e-126
 Identities = 249/445 (55%), Positives = 310/445 (69%)

Query:    38 DVYIDEVKRLGSIAGPMVAVNLSQYFLQVISVMMVGHLGELFLSSTAIAISFSAVTGXXX 97
             D ++ E K+L  IAGPM+AVN S Y LQVIS+MMVGHLGELFLSSTAIA+SF +VTG   
Sbjct:    21 DGFLRETKKLSYIAGPMIAVNSSMYVLQVISIMMVGHLGELFLSSTAIAVSFCSVTGFSV 80

Query:    98 XXXXXXXXXXQASCSYRIVARPISQQYRKLGTQMHTAMFCXXXXXXXXXXXWANMGKLLI 157
                       +  C     A+    QY KLG   +T +             W  +G +L 
Sbjct:    81 VFGLASAL--ETLCGQANGAK----QYEKLGVHTYTGIVSLFLVCIPLSLLWTYIGDILS 134

Query:   158 LMGQDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQVQSLVTPMLISSCATVFFHIILC 217
             L+GQD  ++ EAGKF  WLIPALFGY TLQPLVR+ Q QSL+ P+++SS +++  HI+LC
Sbjct:   135 LIGQDAMVAQEAGKFATWLIPALFGYATLQPLVRFFQAQSLILPLVMSSVSSLCIHIVLC 194

Query:   218 WALVLKFELNNIGAALAIGTSYWLNVLLLGLYMTFSSACAQTRVQVSMELFQGIKEFFLL 277
             W+LV KF L ++GAA+AIG SYWLNV +LGLYMTFSS+C+++R  +SM LF+G+ EFF  
Sbjct:   195 WSLVFKFGLGSLGAAIAIGVSYWLNVTVLGLYMTFSSSCSKSRATISMSLFEGMGEFFRF 254

Query:   278 AIPSAFMVCLEWWSFEFLTLLSGLLPNPELEASVLSVCLATITTLFTIPDGLGAAASTRV 337
              IPSA M+CLEWWSFEFL LLSG+LPNP+LEASVLSVCL+T ++L+ IP+ LGAAASTRV
Sbjct:   255 GIPSASMICLEWWSFEFLVLLSGILPNPKLEASVLSVCLSTQSSLYQIPESLGAAASTRV 314

Query:   338 SNALGAGNPQAAIIAVRAXXXXXXXXXXXXSSILYASRHVFGYIFSNDQEVVDYVTSMAP 397
             +N LGAGNP+ A +AV               +I++ +R+VFGY+FS++ EVVDYV SMAP
Sbjct:   315 ANELGAGNPKQARMAVYTAMVITGVESIMVGAIVFGARNVFGYLFSSETEVVDYVKSMAP 374

Query:   398 LICLCVILNGLQAVLS---EG-GSQNLGAYANLTAYYHFGIPVAAALGFWLKMRGEGLWI 453
             L+ L VI + L A LS    G G Q++GAY NL AYY FGIP A  L F  KMRG GLWI
Sbjct:   375 LLSLSVIFDALHAALSGVARGSGRQDIGAYVNLAAYYLFGIPTAILLAFGFKMRGRGLWI 434

Query:   454 GIQVGAFVQIVLLFLITSCQNWKKQ 478
             GI VG+ VQ VLL LI    NWKKQ
Sbjct:   435 GITVGSCVQAVLLGLIVILTNWKKQ 459
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0005774 "vacuolar membrane" evidence=IDA
TAIR|locus:2037858 AT1G15170 "AT1G15170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037723 AT1G15150 "AT1G15150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037848 AT1G15160 "AT1G15160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037868 AT1G15180 "AT1G15180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050180 AT2G04050 "AT2G04050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050230 AT2G04100 "AT2G04100" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010926 AT1G64820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050185 AT2G04080 "AT2G04080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2033334 AT1G66760 "AT1G66760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q10085YAO6_SCHPONo assigned EC number0.30640.88490.9296yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.X.6692.1
hypothetical protein (455 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_Genewise1_v1.C_LG_IX1583
hypothetical protein (460 aa)
  •     0.425

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query478
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-147
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 2e-50
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 1e-43
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 3e-39
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 1e-28
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 4e-23
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 6e-18
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 3e-17
pfam01554161 pfam01554, MatE, MatE 5e-16
pfam01554161 pfam01554, MatE, MatE 1e-14
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 2e-13
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 1e-12
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 3e-12
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 3e-12
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 7e-11
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 8e-09
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 7e-07
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 2e-06
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 0.003
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  426 bits (1099), Expect = e-147
 Identities = 193/440 (43%), Positives = 267/440 (60%), Gaps = 11/440 (2%)

Query: 43  EVKRLGSIAGPMVAVNLSQYFLQVISVMMVGHLGELFLSSTAIAISFSAVTGFSLLCFRL 102
           E K+L  +A P+V  +L QY L V+SV+ VGHLG+L L++ ++A SF+ VTGFS+L    
Sbjct: 1   EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLA 60

Query: 103 LYFLLQASCSYRIVARPISQQYRKLGTQMHTAMFCLLLACLPVSLLWANMGKLLILMGQD 162
                    ++       ++ Y+ +G  +  A+  LLL C+P+SLLW N   +L+L+GQD
Sbjct: 61  SALDTLCGQAFG------AKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQD 114

Query: 163 PAISSEAGKFTVWLIPALFGYGTLQPLVRYLQVQSLVTPMLISSCATVFFHIILCWALVL 222
           P I+  AG++  WLIP LF Y   +PL RYLQ Q +V P++  S   +  +I+L + LV 
Sbjct: 115 PEIARLAGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVF 174

Query: 223 KFELNNIGAALAIGTSYWLNVLLLGLYMTFSSACAQTRVQVSMELFQGIKEFFLLAIPSA 282
              L  IGAALA   SYWL V+LL LY+ FS     T    S E F+G   F  LAIPSA
Sbjct: 175 VLGLGFIGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSA 234

Query: 283 FMVCLEWWSFEFLTLLSGLLPNPELEASVLSVCLATITTLFTIPDGLGAAASTRVSNALG 342
            M+CLEWW+FE L LL+GLLP   +  +  S+CL T + L+ IP G+  AAS RV N LG
Sbjct: 235 LMLCLEWWAFEILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELG 293

Query: 343 AGNPQAAIIAVRAVLFLTVLETVVVSSILYASRHVFGYIFSNDQEVVDYVTSMAPLICLC 402
           AGNP+ A +A    L L+++  VVV+ +L   R V+ Y+F++D+EV+  V  + P++ L 
Sbjct: 294 AGNPKRAKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPILALF 353

Query: 403 VILNGLQAVLSE----GGSQNLGAYANLTAYYHFGIPVAAALGFWLKMRGEGLWIGIQVG 458
            I +GLQAVLS      G Q LGAY NL AYY  G+PV   L F L +  +GLWIG+  G
Sbjct: 354 QIFDGLQAVLSGVLRGCGRQKLGAYVNLVAYYLIGLPVGLLLAFVLGLGLKGLWIGLIAG 413

Query: 459 AFVQIVLLFLITSCQNWKKQ 478
             +Q V+L LI    +W K+
Sbjct: 414 LILQAVILLLIILRTDWDKE 433

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 478
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.98
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.97
PRK10459492 colanic acid exporter; Provisional 99.93
COG2244480 RfbX Membrane protein involved in the export of O- 99.91
PRK00187464 multidrug efflux protein NorA; Provisional 99.89
PRK10189 478 MATE family multidrug exporter; Provisional 99.88
PRK01766456 multidrug efflux protein; Reviewed 99.88
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.87
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 99.86
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 99.86
TIGR01695502 mviN integral membrane protein MviN. This model re 99.82
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.75
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.73
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.72
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.71
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.71
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.71
PRK10459492 colanic acid exporter; Provisional 99.68
PRK15099416 O-antigen translocase; Provisional 99.68
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.67
COG2244480 RfbX Membrane protein involved in the export of O- 99.58
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.44
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.18
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.89
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 98.85
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.62
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 98.53
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.45
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 98.14
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 97.83
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 97.49
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 97.06
PF07260 345 ANKH: Progressive ankylosis protein (ANKH); InterP 96.79
COG4267467 Predicted membrane protein [Function unknown] 95.28
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=8.4e-58  Score=455.15  Aligned_cols=429  Identities=23%  Similarity=0.309  Sum_probs=406.0

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhccCCc
Q 037703           40 YIDEVKRLGSIAGPMVAVNLSQYFLQVISVMMVGHLGELFLSSTAIAISFSAVTGFSLLCFRLLYFLLQASCSYRIVARP  119 (478)
Q Consensus        40 ~~~~~k~l~~~~~p~~~~~~~~~~~~~~d~~~i~~~G~~~~a~~~~~~~i~~~~~~~~~~gl~~~~a~~~~vs~~~g~~~  119 (478)
                      .++..|+++++++|++++++.+.+++++|+.++||+|++++|+.++++++..++ ..+..|++  .+.++.++|++|   
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~--~g~~~liaq~~G---   85 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLG--TGTTVLVAQAIG---   85 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHH--HhHHHHHHHHHc---
Confidence            467899999999999999999999999999999999999999999999999986 89999999  999999999999   


Q ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCc
Q 037703          120 ISQQYRKLGTQMHTAMFCLLLACLPVSLL-WANMGKLLILMGQDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQVQSL  198 (478)
Q Consensus       120 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~  198 (478)
                       +||++++++..++++.++..++++.+++ ++++++++.+++.++|+.+.+.+|+++..++.|+..+...+.+.+|+.|+
T Consensus        86 -a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~  164 (455)
T COG0534          86 -AGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGD  164 (455)
T ss_pred             -CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence             9999999999999999999999888887 99999999999998889999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhh-cC-CCcchhHHHHHHHHHHHHHHHHHHHHhcccc-hhhcccccHHHHHhHHHHH
Q 037703          199 VTPMLISSCATVFFHIILCWALVLK-FE-LNNIGAALAIGTSYWLNVLLLGLYMTFSSAC-AQTRVQVSMELFQGIKEFF  275 (478)
Q Consensus       199 ~~~~~~~~i~~~~~~i~l~~~li~~-~~-~Gi~g~a~a~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  275 (478)
                      ++.+++.++++.++|+++|++|+++ .+ +|+.|+|+||.+++++..++..++++++++. ...+.+..+.+++.+|+++
T Consensus       165 ~~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  244 (455)
T COG0534         165 TKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEIL  244 (455)
T ss_pred             CchhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHH
Confidence            9999999999999999999999998 57 9999999999999999999999999887752 2222344456678899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 037703          276 LLAIPSAFMVCLEWWSFEFLTLLSGLLPNPELEASVLSVCLATITTLFTIPDGLGAAASTRVSNALGAGNPQAAIIAVRA  355 (478)
Q Consensus       276 ~~~lp~~~~~~~~~~~~~i~~~~~~~lg~~~~~~aa~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~  355 (478)
                      ++|+|.++++......+...+.+++++|+  .++|+|+++.++.++.++++.|++++.++++++++|+||+|++++..+.
T Consensus       245 ~lG~p~~~~~~~~~~~~~~~~~~~~~~G~--~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~  322 (455)
T COG0534         245 RLGLPIFLESLSESLGFLLLTLFVARLGT--VALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARL  322 (455)
T ss_pred             HhcccHHHHHHHHHHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999999999999999999999998  5789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhchhHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHH----HHHhccCcchhhHHHHHHHHHH
Q 037703          356 VLFLTVLETVVVSSILYASRHVFGYIFSNDQEVVDYVTSMAPLICLCVILNGLQ----AVLSEGGSQNLGAYANLTAYYH  431 (478)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~i~~~~~~~~~~~----~~l~~~g~~~~~~~~~~~~~~~  431 (478)
                      +.++++.+++..+++++.+++++..+|++|+|+.+.+..++++....+++++++    +.+||.||+|.++..+++++|+
T Consensus       323 ~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~  402 (455)
T COG0534         323 ALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWG  402 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999874    6788899999999999999999


Q ss_pred             HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHccCCCCC
Q 037703          432 FGIPVAAALGFWLKMRGEGLWIGIQVGAFVQIVLLFLITSCQNWKKQ  478 (478)
Q Consensus       432 v~i~~~~~~~~~~~~g~~g~~~a~~i~~~v~~~~~~~~~~~~~w~~~  478 (478)
                      +.+|+.+++.+.. +|..|+|++..+++.+..+...+++++.+|+++
T Consensus       403 ~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (455)
T COG0534         403 FRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRK  448 (455)
T ss_pred             HHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            9999999999876 899999999999999999999999999999864

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query478
3mkt_A460 Structure Of A Cation-Bound Multidrug And Toxin Com 4e-10
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460 Back     alignment and structure 
Iteration: 1

 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 131/322 (40%), Gaps = 31/322 (9%)
Query: 159 MGQDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQVQSLVTPMLISSCATVFFHIILCW 218
           M  + A++++   +   +I A+  Y   Q L  +    SL  P ++     +  +I L W
Sbjct: 119 MDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNW 178
Query: 219 ALVL-KF---ELNNIGAALAIGTSYWLNVLLLGLYMTFSSACAQTRVQVSMELFQGIK-- 272
             V  KF   EL  +G  +A    YW+ +LLL  Y+  S   A  +V    E F   +  
Sbjct: 179 IFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKV---FETFHKPQPK 235
Query: 273 ---EFFLLAIPSAFMVCLEWWSFEFLTLLSGLLPNPELEASVLSVCLATITTLFTIPDGL 329
                F L  P A  +  E   F  + LL   L +  + A  +++  +++  +F  P  +
Sbjct: 236 ELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMF--PMSI 293
Query: 330 GAAASTRVSNALGAGNPQAAIIAVRAXXXXXXXXXXXXSSILYASRHVFGYIFSNDQEVV 389
           GAA S RV + LG  + + A IA               + +    R     +++ +Q VV
Sbjct: 294 GAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVV 353
Query: 390 DYVTSMAPLICLCVILNGLQAVLSEGGSQNLGAYANLTAYYH--------FGIPVAAALG 441
                +     +   ++ +Q V     + +L  Y ++TA +H         G+P    LG
Sbjct: 354 ALAMQLLLFAAIYQCMDAVQVV----AAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILG 409
Query: 442 F--WL---KMRGEGLWIGIQVG 458
              WL    +  +G W+G  +G
Sbjct: 410 MTNWLTEQPLGAKGFWLGFIIG 431

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query478
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 1e-71
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  233 bits (596), Expect = 1e-71
 Identities = 91/445 (20%), Positives = 175/445 (39%), Gaps = 26/445 (5%)

Query: 40  YIDEVKRLGSIAGPMVAVNLSQYFLQVISVMMVGHLGELFLSSTAIAISFSAVTGFSLLC 99
           Y  E   L  +A P++  +++Q  +  +  +M G +  + +++ +IA S        L  
Sbjct: 7   YKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIW------LPS 60

Query: 100 FRLLYFLLQASCSYRIVARPI-SQQYRKLGTQMHTAMFCLLLACLPVSLLWANMGKLLIL 158
                 LL A     +VA+   + +  K+  ++H  +   LL  +P+  +      ++  
Sbjct: 61  ILFGVGLLMALVP--VVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRF 118

Query: 159 MGQDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQVQSLVTPMLISSCATVFFHIILCW 218
           M  + A++++   +   +I A+  Y   Q L  +    SL  P ++     +  +I L W
Sbjct: 119 MDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNW 178

Query: 219 ALVLKF----ELNNIGAALAIGTSYWLNVLLLGLYMTFSSACAQTRVQVSMEL--FQGIK 272
             V       EL  +G  +A    YW+ +LLL  Y+  S   A  +V  +      + + 
Sbjct: 179 IFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELI 238

Query: 273 EFFLLAIPSAFMVCLEWWSFEFLTLLSGLLPNPELEASVLSVCLATITTLFTIPDGLGAA 332
             F L  P A  +  E   F  + LL   L +  + A    V L   + +F  P  +GAA
Sbjct: 239 RLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAA--HQVALNFSSLVFMFPMSIGAA 296

Query: 333 ASTRVSNALGAGNPQAAIIAVRAVLFLTVLETVVVSSILYASRHVFGYIFSNDQEVVDYV 392
            S RV + LG  + + A IA    L   +    + + +    R     +++ +Q VV   
Sbjct: 297 VSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALA 356

Query: 393 TSMAPLICLCVILNGLQAVLSEG----GSQNLGAYANLTAYYHFGIPVAAALGF-----W 443
             +     +   ++ +Q V +             +    +Y+  G+P    LG       
Sbjct: 357 MQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTE 416

Query: 444 LKMRGEGLWIGIQVGAFVQIVLLFL 468
             +  +G W+G  +G     ++L  
Sbjct: 417 QPLGAKGFWLGFIIGLSAAALMLGQ 441

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query478
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 99.84
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=7.3e-48  Score=388.68  Aligned_cols=429  Identities=20%  Similarity=0.295  Sum_probs=391.5

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhccCC
Q 037703           39 VYIDEVKRLGSIAGPMVAVNLSQYFLQVISVMMVGHLGELFLSSTAIAISFSAVTGFSLLCFRLLYFLLQASCSYRIVAR  118 (478)
Q Consensus        39 ~~~~~~k~l~~~~~p~~~~~~~~~~~~~~d~~~i~~~G~~~~a~~~~~~~i~~~~~~~~~~gl~~~~a~~~~vs~~~g~~  118 (478)
                      ..++..|++++.++|.+++++...+.+++|+.+++++|++++|+++.+.++..+. ..+..|++  .+..+.++|++|  
T Consensus         6 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~--~~~~~~is~~~g--   80 (460)
T 3mkt_A            6 RYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLL--MALVPVVAQLNG--   80 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHH--HHHGGGCTTTTS--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHc--
Confidence            3467899999999999999999999999999999999999999999999998875 77788888  999999999999  


Q ss_pred             cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCc
Q 037703          119 PISQQYRKLGTQMHTAMFCLLLACLPVSLLWANMGKLLILMGQDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQVQSL  198 (478)
Q Consensus       119 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~  198 (478)
                        ++|+++.++..+.++.+...++++.+++.++.++++.+++.+++..+.+..|+++++++.++..+.....+++|+.++
T Consensus        81 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~  158 (460)
T 3mkt_A           81 --AGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSL  158 (460)
T ss_dssp             --SSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSC
T ss_pred             --CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence              999999999999999999999999877777889999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhh----cCCCcchhHHHHHHHHHHHHHHHHHHHHhcccchhhc--ccccHHHHHhHH
Q 037703          199 VTPMLISSCATVFFHIILCWALVLK----FELNNIGAALAIGTSYWLNVLLLGLYMTFSSACAQTR--VQVSMELFQGIK  272 (478)
Q Consensus       199 ~~~~~~~~i~~~~~~i~l~~~li~~----~~~Gi~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  272 (478)
                      .+++.+.++++.++|+++++++++.    |++|+.|+++++.+++++..++..++++++++.++.+  .++.+.+++.+|
T Consensus       159 ~~~~~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (460)
T 3mkt_A          159 TKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELI  238 (460)
T ss_dssp             CTTTHHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTT
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHH
Confidence            9999999999999999999999975    4799999999999999999999888887665432211  222344567789


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHH
Q 037703          273 EFFLLAIPSAFMVCLEWWSFEFLTLLSGLLPNPELEASVLSVCLATITTLFTIPDGLGAAASTRVSNALGAGNPQAAIIA  352 (478)
Q Consensus       273 ~~~~~~lp~~~~~~~~~~~~~i~~~~~~~lg~~~~~~aa~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~~~~~~  352 (478)
                      ++++.++|..+++...+....+++.+++++|+  .++++|++++++.++..+++.+++++..|.+++++|+||.+++++.
T Consensus       239 ~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~--~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~  316 (460)
T 3mkt_A          239 RLFRLGFPVAAALFFEVTLFAVVALLVAPLGS--TVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIA  316 (460)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTH
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            99999999999999999999999999999987  4678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhchhHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHH----HHHhccCcchhhHHHHHHH
Q 037703          353 VRAVLFLTVLETVVVSSILYASRHVFGYIFSNDQEVVDYVTSMAPLICLCVILNGLQ----AVLSEGGSQNLGAYANLTA  428 (478)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~i~~~~~~~~~~~----~~l~~~g~~~~~~~~~~~~  428 (478)
                      .+++.++...++++.+++++++++++..+|++|+++.+.+..++++.....++++++    +.+++.||+|.+++.++++
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~  396 (460)
T 3mkt_A          317 ANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFIS  396 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence            999999999999999999999999999999999888888999999999999888874    6778899999999999999


Q ss_pred             HHHHHHHHHHHHHHh----cC-CchhHHHHHHHHHHHHHHHHHHHHHHccCCC
Q 037703          429 YYHFGIPVAAALGFW----LK-MRGEGLWIGIQVGAFVQIVLLFLITSCQNWK  476 (478)
Q Consensus       429 ~~~v~i~~~~~~~~~----~~-~g~~g~~~a~~i~~~v~~~~~~~~~~~~~w~  476 (478)
                      .|++++|+.+++...    ++ +|+.|+|+++.+++.+..++..++++|..++
T Consensus       397 ~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~~~  449 (460)
T 3mkt_A          397 YWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQKQ  449 (460)
T ss_dssp             HHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSCCS
T ss_pred             HHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            889999999999887    66 8999999999999999999998887765443
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00