Citrus Sinensis ID: 037723

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710----
Protein Sequence
RESGNNLQYNYREASNTQLMRYCLSGRQKTSPRNCFQMAIGQQMRDVLILSMAVDSKNASEQSTRVHISDTEVIDALKDVDESDNVGHSLVNILDSAISLLAKDVLAEEPPSPFFNLQCDIDELSNDGSLFLSDSTDNDGSVLENSWEGYEDDLFQNVFDKKDERSCIAGFVFEKGGTSGIIIKLGHKFKDEFQFRTAVDIQAMRDGIKLCVMENTSTFISCECSDLMCDWKVSAAKVRKSNVFVLKEITPNYTCKRRTYKFPLGRKWNAAKFLHLWVQNPNIDFHRLRYEIETYSGFKYPTWKLEAIDKTAKLWLRTYHNYGYERLFQYKNEMLTVNSNNIVIIQKKTFDDPDLAVFDRMFVLFADCSHAFKITCRRLVIVDGWEIDSPYKSVMLVAVFRDANNAILPIAFCEVQEENFDSWSFFLKNLYEGLCMDYMDYGKGICIMCDRDNGVDEAVSDLYNKLKEQFPLAPVYSLFWAACSRTNKVTFQQHMMLLQDRNKDCYGWLINREYHCWALYCMPEWAKSTDITISAAEQLRSWLLKYLDMNVANRFTAITRETVKIFEKSYLAGWDWVRDNITPAARQQTIQNVIEGDRWNIHSGANSNILTVTMNGLSFVVNKELSVCSCCLWQLSGIPCSHACQCIIRWAGGYHDFVHVSMKIDVYRSTYGPGMKELPEICKWTPQLIDIVQPPPKRLVDPMNGDDKTEVTCN
Secondary Structure (PSIPRED)
cccccccEEEEccccccHHHHHHHcccccccccccEEEEcccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccEEEEccEEccHHHHHHHHHHHHHHccEEEEEEEEcccEEEEEEcccccccEEEEEEEccccEEEEEEEcccEEEEccccccccccccHHHHHHHEEcccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccEEEEEEccccccccccEEEEEEEccccccHHHcccEEEEEEccEEEccccEEEEEEEEEEccccccccccccccccccccHHHHHHHHHHHHcccccccccccEEEEEccccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHcccccEEEEcccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccEEEEEccccEEEEEEEccEEEEEcccccEEEcccccccccccHHHHHHHHHHHccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEHcccccEEEEEEEEEEEcccHHHccHHHHHcccHcHEEccHHHHHHccccccccccEEEcccccccEcccccccccccccccccccccccccHHccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccEEEEcEEcccHHHHHHHHHHHHHHccccEEEEEccccEEEEEEccccccEEEEEEEcccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHcccEEcHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccHHHHHEEEHHHHHHHHHHccccEEEEEccEEccccccEEEEEEEEcccccEEEEEEEEEEccccHHHHHHHHHHHHHHccccccccccEEEEEcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHcccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccEEEEEccccEEEEEEEcccEEEEEEcccEEcccccccccccHHHHHHHHHHccccHHHHHHHHccHHHHHHHHccccccccccccccccccccccccccccccccccccccEEccc
Coil and Loop (DISEMBL)
resgnnlqynyrEASNTQLMRYCLsgrqktsprncFQMAIGQQMRDVLILSMAVdsknaseqstrvhisDTEVIDAlkdvdesdnvGHSLVNILDSAISLLAKdvlaeeppspffnlqcdidelsndgslflsdstdndgsvlenswegyeddlfqnvfdkkdersciagfvfekggtsgIIIKLGhkfkdefqfRTAVDIQAMRDGIKLCVMEntstfiscecsDLMCDWKVSAAKVRKSNVFVlkeitpnytckrrtykfplgrkwNAAKFLHLWvqnpnidfhrLRYEIetysgfkyptwklEAIDKTAKLWLRTYHNYGYERLFQYKNEMLTVNSNNIVIIqkktfddpdlavFDRMFVLFADCSHAFKITCRRLVIVdgweidspyKSVMLVAVFRdannailpiafcevqeenfDSWSFFLKNLYEGLCMDYMDYGKGICimcdrdngvdEAVSDLYNKLKeqfplapvysLFWAACSRTNKVTFQQHMMLLQDRNKDCYGWLINREYHCWALycmpewakstDITISAAEQLRSWLLKYLDMNVANRFTAITRETVKIFEKSYLAGWDWVRDNITPAARQQTIQNVIEgdrwnihsgansNILTVTMNGLSFVVNKELSVCScclwqlsgipcshacQCIIRwaggyhdfVHVSMKIDvyrstygpgmkelpeickwtpqlidivqpppkrlvdpmngddktevtcn
Flexible Loop (DISEMBL)
resgnnlqynyreaSNTQLMRYCLSGRQKTSPRNCFQMAIGQQMRDVLILSMAVDSknaseqstrvhisdtEVIDALKDVDESDNVGHSLVNILDSAISLLAKDVLAEEPPSPFFNLQCDIDELSNDGSLFLSDSTDNDGSVLENSWEGYEDDLFQNVFDKKDERSCIAGfvfekggtsgIIIKLGHKFKDEFQFRTAVDIQAMRDGIKLCVMENTSTFISCECSDLMCDWKVSAAkvrksnvfvlkeitpnytckrrtyKFPLGRKWNAAKFLHLWVQNPNIDFHRLRYEIETYsgfkyptwkLEAIDKTAKLWLRTYHNYGYERLFQYKNEMLTVNSNNIVIIQKKTFDDPDLAVFDRMFVLFADCSHAFKITCRRLVIVDGWEIDSPYKSVMLVAVFRDANNAILPIAFCEVQEENFDSWSFFLKNLYEGLCMDYMDYGKGICIMCDRDNGVDEAVSDLYNKLKEQFPLAPVYSLFWAACSRTNKVTFQQHMMLLQDRNKDCYGWLINREYHCWALYCMPEWAKSTDITISAAEQLRSWLLKYLDMNVANRFTAITRETVKIFEKSYLAGWDWVRDNITPAARQQTIQNVIEGDRWNIHSGANSNILTVTMNGLSFVVNKELSVCSCCLWQLSGIPCSHACQCIIRWAGGYHDFVHVSMKIDVYRSTYGPGMKELPEICKWTPQLIDIvqpppkrlvdpmngddktevtcn
Low Complexity Region (SEG)
RESGNNLQYNYREASNTQLMRYCLSGRQKTSPRNCFQMAIGQQMRDVLILSMAVDSKNASEQSTRVHISDTEVIDALKDVDESDNVGHSLVNILDSAISLLAKDVLAEEPPSPFFNLQCDIDELSNDGSLFLSDSTDNDGSVLENSWEGYEDDLFQNVFDKKDERSCIAGFVFEKGGTSGIIIKLGHKFKDEFQFRTAVDIQAMRDGIKLCVMENTSTFISCECSDLMCDWKVSAAKVRKSNVFVLKEITPNYTCKRRTYKFPLGRKWNAAKFLHLWVQNPNIDFHRLRYEIETYSGFKYPTWKLEAIDKTAKLWLRTYHNYGYERLFQYKNEMLTVNSNNIVIIQKKTFDDPDLAVFDRMFVLFADCSHAFKITCRRLVIVDGWEIDSPYKSVMLVAVFRDANNAILPIAFCEVQEENFDSWSFFLKNLYEGLCMDYMDYGKGICIMCDRDNGVDEAVSDLYNKLKEQFPLAPVYSLFWAACSRTNKVTFQQHMMLLQDRNKDCYGWLINREYHCWALYCMPEWAKSTDITISAAEQLRSWLLKYLDMNVANRFTAITRETVKIFEKSYLAGWDWVRDNITPAARQQTIQNVIEGDRWNIHSGANSNILTVTMNGLSFVVNKELSVCSCCLWQLSGIPCSHACQCIIRWAGGYHDFVHVSMKIDVYRSTYGPGMKELPEICKWTPQLIDIVQPPPKRLVDPMNGDDKTEVTCN
Disordered region (IsUnstruct)
*****************QLMRYCLSG******RNCFQMAIGQQMRDVLILSMAV***************DTEVIDALKDVDESDNVGHSLVNILDSAISLLAKDVLAEEPPSPFFNLQCDIDELSNDGSLFL*********VLENSWEGYEDDLFQNVFDKKDERSCIAGFVFEKGGTSGIIIKLGHKFKDEFQFRTAVDIQAMRDGIKLCVMENTSTFISCECSDLMCDWKVSAAKVRKSNVFVLKEITPNYTCKRRTYKFPLGRKWNAAKFLHLWVQNPNIDFHRLRYEIETYSGFKYPTWKLEAIDKTAKLWLRTYHNYGYERLFQYKNEMLTVNSNNIVIIQKKTFDDPDLAVFDRMFVLFADCSHAFKITCRRLVIVDGWEIDSPYKSVMLVAVFRDANNAILPIAFCEVQEENFDSWSFFLKNLYEGLCMDYMDYGKGICIMCDRDNGVDEAVSDLYNKLKEQFPLAPVYSLFWAACSRTNKVTFQQHMMLLQDRNKDCYGWLINREYHCWALYCMPEWAKSTDITISAAEQLRSWLLKYLDMNVANRFTAITRETVKIFEKSYLAGWDWVRDNITPAARQQTIQNVIEGDRWNIHSGANSNILTVTMNGLSFVVNKELSVCSCCLWQLSGIPCSHACQCIIRWAGGYHDFVHVSMKIDVYRSTYGPGMKELPEICKWTPQLIDIV**********************
Disordered Region (DISOPRED)
**********YREASNTQLMRYCLSG*Q******CFQMAIGQQMRDVLI******************************************************************NLQCDIDE**********************************************GFVFEKGGTSGIIIKLGHKFKDEFQFRTAVDIQAMRDGIKLCVMENTSTFISCECSDLMCDWKVSAAKVRKSNVFVLKEITPNYTCKRRTYKFPLGRKWNAAKFLHLWVQNPNIDFHRLRYEIETYSGFKYPTWKLEAIDKTAKLWLRTYHNYGYERLFQYKNEMLTVNSNNIVIIQKKTFDDPDLAVFDRMFVLFADCSHAFKITCRRLVIVDGWEIDSPYKSVMLVAVFRDANNAILPIAFCEVQEENFDSWSFFLKNLYEGLCMDYMDYGKGICIMCDRDNGVDEAVSDLYNKLKEQFPLAPVYSLFWAACSRTNKVTFQQHMMLLQDRNKDCYGWLINREYHCWALYCMPEWAKSTDITISAAEQLRSWLLKYLDMNVANRFTAITRETVKIFEKSYLAGWDWVRDNITPAARQQTIQNVIEGDRWNIHSGANSNILTVTMNGLSFVVNKELSVCSCCLWQLSGIPCSHACQCIIRWAGGYHDFVHVSMKIDVYRSTYGPGMKELPEICKWTPQLIDIVQ*********************
Disordered Region (DISEMBL)
********YNYREASNTQLMRYCLSGRQKTSPRNCFQMAIGQQMRDVLILSMAVD***********HISDTEVIDALKDVDESDNVGHSLVNILDSAISLLAKDVLAEEPPSPFFNLQCDIDELSNDGSLFLSDSTDNDGSVLENSWEGYEDDLFQNVFDKKDERSCIAGFVFEKGGTSGIIIKLGHKFKDEFQFRTAVDIQAMRDGIKLCVMENTSTFISCECSDLMCDWKVSAAKVRKSNVFVLKEITPNYTCKRRTYKFPLGRKWNAAKFLHLWVQNPNIDFHRLRYEIETYSGFKYPTWKLEAIDKTAKLWLRTYHNYGYERLFQYKNEMLTVNSNNIVIIQKKTFDDPDLAVFDRMFVLFADCSHAFKITCRRLVIVDGWEIDSPYKSVMLVAVFRDANNAILPIAFCEVQEENFDSWSFFLKNLYEGLCMDYMDYGKGICIMCDRDNGVDEAVSDLYNKLKEQFPLAPVYSLFWAACSRTNKVTFQQHMMLLQDRNKDCYGWLINREYHCWALYCMPEWAKSTDITISAAEQLRSWLLKYLDMNVANRFTAITRETVKIFEKSYLAGWDWVRDNITPAARQQTIQNVIEGDRWNIHSGANSNILTVTMNGLSFVVNKELSVCSCCLWQLSGIPCSHACQCIIRWAGGYHDFVHVSMKIDVYRSTYGPGMKELPEICKWTPQLIDIVQPPPKRLVDPMNG*********
Disordered Region (DISPRO)
****NNLQYNYREASNTQLMRYCLSGRQKTSPRNCFQMAIGQQMRDVLILSMAVDSKN******RVH*****VIDALKD*************************************************************************************RSCIAGFVFEKGGTSGIIIKLGHKFKDEFQFRTAVDIQAMRDGIKLCVMENTSTFISCECSDLMCDWKVSAAKVRKSNVFVLKEITPNYTCKRRTYKFPLGRKWNAAKFLHLWVQNPNIDFHRLRYEIETYSGFKYPTWKLEAIDKTAKLWLRTYHNYGYERLFQYKNEMLTVNSNNIVIIQKKTFDDPDLAVFDRMFVLFADCSHAFKITCRRLVIVDGWEIDSPYKSVMLVAVFRDANNAILPIAFCEVQEENFDSWSFFLKNLYEGLCMDYMDYGKGICIMCDRDNGVDEAVSDLYNKLKEQFPLAPVYSLFWAACSRTNKVTFQQHMMLLQDRNKDCYGWLINREYHCWALYCMPEWAKSTDITISAAEQLRSWLLKYLDMNVANRFTAITRETVKIFEKSYLAGWDWVRDNITPAARQQTIQNVIEGDRWNIHSGANSNILTVTMNGLSFVVNKELSVCSCCLWQLSGIPCSHACQCIIRWAGGYHDFVHVSMKIDVYRSTYGPGMKELPEICKWTPQLIDIVQPPPKR****************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
RESGNNLQYNYREASNTQLMRYCLSGRQKTSPRNCFQMAIGQQMRDVLILSMAVDSKNASEQSTRVHISDTEVIDALKDVDESDNVGHSLVNILDSAISLLAKDVLAEEPPSPFFNLQCDIDELSNDGSLFLSDSTDNDGSVLENSWEGYEDDLFQNVFDKKDERSCIAGFVFEKGGTSGIIIKLGHKFKDEFQFRTAVDIQAMRDGIKLCVMENTSTFISCECSDLMCDWKVSAAKVRKSNVFVLKEITPNYTCKRRTYKFPLGRKWNAAKFLHLWVQNPNIDFHRLRYEIETYSGFKYPTWKLEAIDKTAKLWLRTYHNYGYERLFQYKNEMLTVNSNNIVIIQKKTFDDPDLAVFDRMFVLFADCSHAFKITCRRLVIVDGWEIDSPYKSVMLVAVFRDANNAILPIAFCEVQEENFDSWSFFLKNLYEGLCMDYMDYGKGICIMCDRDNGVDEAVSDLYNKLKEQFPLAPVYSLFWAACSRTNKVTFQQHMMLLQDRNKDCYGWLINREYHCWALYCMPEWAKSTDITISAAEQLRSWLLKYLDMNVANRFTAITRETVKIFEKSYLAGWDWVRDNITPAARQQTIQNVIEGDRWNIHSGANSNILTVTMNGLSFVVNKELSVCSCCLWQLSGIPCSHACQCIIRWAGGYHDFVHVSMKIDVYRSTYGPGMKELPEICKWTPQLIDIVQPPPKRLVDPMNGDDKTEVTCN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	714
356576716	750	PREDICTED: uncharacterized protein LOC10	0.791	0.753	0.211	2e-35
357132996	748	PREDICTED: uncharacterized protein LOC10	0.711	0.679	0.212	3e-34
224115958	572	predicted protein [Populus trichocarpa]	0.712	0.889	0.213	4e-34
356535187	752	PREDICTED: uncharacterized protein LOC10	0.795	0.755	0.211	9e-33
115489412	749	Os12g0597300 [Oryza sativa Japonica Grou	0.719	0.686	0.215	1e-32
224125676	581	predicted protein [Populus trichocarpa]	0.712	0.876	0.208	1e-32
125537276	747	hypothetical protein OsI_38982 [Oryza sa	0.719	0.688	0.215	1e-32
308081269	796	uncharacterized protein LOC100501908 [Ze	0.712	0.639	0.212	2e-32
225452988	749	PREDICTED: uncharacterized protein LOC10	0.710	0.676	0.212	3e-32
293337036	751	uncharacterized protein LOC100382497 [Ze	0.708	0.673	0.212	3e-32

>gi|356576716|ref|XP_003556476.1| PREDICTED: uncharacterized protein LOC100811471 isoform 1 [Glycine max] gi|356576718|ref|XP_003556477.1| PREDICTED: uncharacterized protein LOC100811471 isoform 2 [Glycine max]

 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 129/610 (21%), Positives = 251/610 (41%), Gaps = 45/610 (7%)

Query: 124 LSNDGSLFLSDSTDNDG----SVLENSWEGYEDDLFQNVFDKKDERSCIAGFVFEKGGTS 179
           LS +  L +S++ + D     + ++NS  G +     N  D +  +  +   +  +  + 
Sbjct: 116 LSENNDLTVSENQELDENMGLAAVQNSEMGIDS---ANDMDVQQSQLVVPPIIQARTASP 172

Query: 180 GIIIKLGHKFKDEFQFRTAVDIQAMRDGIKLCVMENTSTFISCECSDLMCDWKVSAAKVR 239
              + +G +F D    R A+   A+    ++  +++  T  + +C+   C W++ AAK+ 
Sbjct: 173 SYELSVGQEFPDVKSCRRALRDTAIALHFEMQTIKSDKTRFTAKCASEGCPWRIHAAKLP 232

Query: 240 KSNVFVLKEITPNYTCKRRTYKFPLGRK-----WNAAKFLHLWVQNPNIDFHRLRYEIET 294
               F ++ I  N+TC   ++   LG +     W A        +NPN     +  EI  
Sbjct: 233 GVPTFTIRTIHENHTCGGISH---LGHQQASVQWVANSVEQRLKENPNCKPKEILEEIHR 289

Query: 295 YSGFKYPTWKLEAIDKTAKLWLRTYHNYGYERLFQYKNEMLTVNSNNIVIIQKKTFDDPD 354
             G      +     +     +R     GY  L QY  ++   N  +I  +    + +P 
Sbjct: 290 VHGITLSYKQAWRGKERIMAAMRGSFEEGYRLLPQYCEQVKRTNPGSIASV----YGNPA 345

Query: 355 LAVFDRMFVLFADCSHAFKITCRRLVIVDGWEIDSPYKSVMLVAVFRDANNAILPIAFCE 414
              F R+F+ F    + F   CR L+ +D   + S Y   +L+A   D + A+ P+AF  
Sbjct: 346 DGCFQRLFISFQASIYGFLNPCRPLLGLDRTYLKSKYLGTLLLATGFDGDGALFPLAFGV 405

Query: 415 VQEENFDSWSFFLKNLYEGLCMDYMDYGKGICIMCDRDNGVDEAVS-------------D 461
           V EEN D+W +FL  L+  L +   +  + + I+ DR  G+ + V               
Sbjct: 406 VDEENDDNWMWFLSELHNLLEIHTENMPR-LTILSDRQKGIVDGVEANFPTAFHGFCMRH 464

Query: 462 LYNKLKEQFPLAPVYSLFWAACSRTNKVTFQQHMMLLQDRNKDCYGWLINREYHCWALYC 521
           L +  +++F    + +L W A +    + F+  ++ +++ ++D   W+       WA   
Sbjct: 465 LSDSFRKEFNNTMLVNLLWEAANALTVIEFEAKILEIEEISQDAAYWIRRIPPRLWATAY 524

Query: 522 MPEWAKSTDITISAAEQLRSWLLKYLDMNVANRFTAITRETVKIFEKSYLAGWDWVRDNI 581
             E  +   +T +  E L +W+L+   + +      I R+ +  F +       W    +
Sbjct: 525 F-EGHRFGHLTANIVESLNTWILEASGLPIIQMMECIRRQLMTWFNERRETSMQWT-SIL 582

Query: 582 TPAARQQTIQNVIEGDRWNIHSGANSNILTVTMNGLSFVVNKELSVCSCCLWQLSGIPCS 641
            P+A ++  + +     + +    ++    +T  G + +V+     C C  WQL G+PC+
Sbjct: 583 VPSAERRVAEALDRARTYQVLRANDAEFEVITHEGTN-IVDIRNRCCLCRGWQLYGLPCA 641

Query: 642 HACQCIIRWAGGYHDFVHVSMKIDVYRSTYGPGMKELPEICKW---------TPQLIDIV 692
           HA   ++      H F      +  YR TY   +  +P+   W           +  ++V
Sbjct: 642 HAVAALLSCRQNVHRFTESCFTVATYRKTYSQTIHPIPDKSLWKELSEGDANVSKATEVV 701

Query: 693 QPPPKRLVDP 702
             PPK L  P
Sbjct: 702 INPPKSLRPP 711

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357132996|ref|XP_003568114.1| PREDICTED: uncharacterized protein LOC100835098 isoform 1 [Brachypodium distachyon] gi|357132998|ref|XP_003568115.1| PREDICTED: uncharacterized protein LOC100835098 isoform 2 [Brachypodium distachyon]

 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 117/550 (21%), Positives = 231/550 (42%), Gaps = 42/550 (7%)

Query: 183 IKLGHKFKDEFQFRTAVDIQAMRDGIKLCVMENTSTFISCECSDLMCDWKVSAAKVRKSN 242
           + +G +F D    R A+   A+    ++  +++  T  + +C+   C W++ AAK+    
Sbjct: 172 LAVGQEFPDVMSCRRAIRDTAIACHFEIQTVKSDKTRFTAKCAAEGCPWRIHAAKLPGVP 231

Query: 243 VFVLKEITPNYTCKRRTYKFPLGRK-----WNAAKFLHLWVQNPNIDFHRLRYEIETYSG 297
            F ++ I  N++C    +   LG +     W A+       +NP+     +  EI    G
Sbjct: 232 TFSIRTILDNHSCVGINH---LGHQQASVQWVASTVEERLRENPHCKPKEILEEIHKSHG 288

Query: 298 FKYPTWKLEAIDKTAKLWLRTYHNYGYERLFQYKNEMLTVNSNNIVIIQKKTFDDPDLAV 357
                 +     +     +R     GY  L +Y  ++   N  +I  I    + +PD   
Sbjct: 289 ITLSYKQAWRGKERIMATVRGSFEEGYRLLPEYCRQIERTNPGSIARI----YGNPDDNC 344

Query: 358 FDRMFVLFADCSHAFKITCRRLVIVDGWEIDSPYKSVMLVAVFRDANNAILPIAFCEVQE 417
           F R+F+ F    + F   CR L+ +D   + + Y   + +A   D + A+ P+AF  V +
Sbjct: 345 FRRLFISFYASIYGFVNACRPLIGLDKTTLKNKYLGTLFLATAFDGDGALFPLAFGVVDD 404

Query: 418 ENFDSWSFFLKNLYEGLCMDYMDYGKGICIMCDRDNGVDEAVS-------------DLYN 464
           EN ++W +FL  L+E L  +  +  + + I+ DR  G+ + V               L  
Sbjct: 405 ENDENWIWFLSELHELLEKNTENMPR-LTILSDRRKGIVDGVDINFPTAFHGYCMRHLSE 463

Query: 465 KLKEQFPLAPVYSLFWAACSRTNKVTFQQHMMLLQDRNKDCYGWLINREYHCW--ALYCM 522
             +++F  + + +L W A S      F+  ++ ++D +++   W+       W  A +  
Sbjct: 464 TFRKEFNNSVLVNLLWEAASVLTATDFETKLLEIEDTSQEAVAWIREIPPRLWATAFFDG 523

Query: 523 PEWAKSTDITISAAEQLRSWLLKYLDMNVANRFTAITRETVKIFEKSYLAGWDWVRDNIT 582
           P + +   +T +  E L SW+L    + +      + R+ +  F +   A   W    + 
Sbjct: 524 PRYGQ---LTANITESLNSWILDASSLPINQMMECLRRQLMTWFNERREASMQWT-TILV 579

Query: 583 PAARQQTIQNVIEGDRWNIHSGANSNILTVTMNGLSFVVNKELSVCSCCLWQLSGIPCSH 642
           P A ++  + +     + +   + +    ++ +  + VV+    VC C  WQL G+PC+H
Sbjct: 580 PTAERRVQEAIERAQNYRVARASEAEFEVISPHEGTNVVDIRNRVCLCRGWQLYGMPCAH 639

Query: 643 ACQCIIRWAGGYHDFVHVSMKIDVYRSTYGPGMKELPEICKW--TPQ--------LIDIV 692
               ++      H +      I +YR TY   +  +P+   W  TP+         ++++
Sbjct: 640 GVAALLSCRQNVHRYTESFFTIAMYRKTYSQTIHPIPDKTHWNETPEDQGEAEQGRLEVI 699

Query: 693 QPPPKRLVDP 702
             PPK L  P
Sbjct: 700 INPPKSLRPP 709

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115958|ref|XP_002332013.1| predicted protein [Populus trichocarpa] gi|222875238|gb|EEF12369.1| predicted protein [Populus trichocarpa]

 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 117/547 (21%), Positives = 226/547 (41%), Gaps = 38/547 (6%)

Query: 183 IKLGHKFKDEFQFRTAVDIQAMRDGIKLCVMENTSTFISCECSDLMCDWKVSAAKVRKSN 242
           + +G +F D F  R A+   A+    ++  +++  T  + +C+   C W++ AAK+    
Sbjct: 1   MAVGQEFPDVFSCRRALRDTAIALHFEMQTIKSDKTRFTAKCASEGCPWRIHAAKLPGVP 60

Query: 243 VFVLKEITPNYTCKRRTYKFPLGRK-----WNAAKFLHLWVQNPNIDFHRLRYEIETYSG 297
            F ++ I  ++TC   ++   LG +     W A        +NPN     +  EI    G
Sbjct: 61  TFTIRTIHESHTCGGISH---LGHQQASVQWVANSVEQRLKENPNYKPKEILEEIHRVHG 117

Query: 298 FKYPTWKLEAIDKTAKLWLRTYHNYGYERLFQYKNEMLTVNSNNIVIIQKKTFDDPDLAV 357
                 +     +     +R     GY  L QY +++   N  +I  +    + +P    
Sbjct: 118 ITLSYKQAWRGKERIMAAMRGSFEEGYRLLPQYCDQVKRTNPGSIASV----YGNPTDNC 173

Query: 358 FDRMFVLFADCSHAFKITCRRLVIVDGWEIDSPYKSVMLVAVFRDANNAILPIAFCEVQE 417
           F R+F+ F    + F   CR L+ +D   + S Y   + +A   D + A+ P+AF  V E
Sbjct: 174 FQRLFISFQASIYGFLNACRPLLGLDRTFLKSKYLGTLFLATGFDGDGALFPLAFGVVDE 233

Query: 418 ENFDSWSFFLKNLYEGLCMDYMDYGKGICIMCDRDNGVDEAVS-------------DLYN 464
           E  ++W +FL  L+  L ++  +  + + I+ DR  G+ + V               L  
Sbjct: 234 ETEENWMWFLSELHSLLEINTENMPR-LTILSDRQKGIVDGVEANFPTAFHGFCMRHLSE 292

Query: 465 KLKEQFPLAPVYSLFWAACSRTNKVTFQQHMMLLQDRNKDCYGWLINREYHCWALYCMPE 524
             +++F    + +L W A      + F+  ++ +++ ++D   W+       WA     E
Sbjct: 293 SFRKEFNNTMLVNLLWEAAHALTVIEFEAKILEIEEISQDAAYWIRRIPPRLWATAYF-E 351

Query: 525 WAKSTDITISAAEQLRSWLLKYLDMNVANRFTAITRETVKIFEKSYLAGWDWVRDNITPA 584
             +   +T +  E L +W+L+   + +      I R+ +  F +       W    + P+
Sbjct: 352 GTRFGHLTANIVESLNTWILEASGLPIIQMMECIRRQLMTWFNERRETSMQWT-SILVPS 410

Query: 585 ARQQTIQNVIEGDRWNIHSGANSNILTVTMNGLSFVVNKELSVCSCCLWQLSGIPCSHAC 644
           A ++  + +     + +     +    ++  G + +V+     C C  WQL G+PC+HA 
Sbjct: 411 AERRVAEALERARTYQVLRANEAEFEVISHEGTN-IVDIRNRCCLCRGWQLYGLPCAHAV 469

Query: 645 QCIIRWAGGYHDFVHVSMKIDVYRSTYGPGMKELPEICKWTP---------QLIDIVQPP 695
             ++      H F      +  YR TY   +  +P+   WT          + I++V  P
Sbjct: 470 AALLSCRQNVHRFTESCFTVATYRKTYSQTIHPIPDKSLWTELSDGDPNSNKAIEVVINP 529

Query: 696 PKRLVDP 702
           PK L  P
Sbjct: 530 PKSLRPP 536

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535187|ref|XP_003536130.1| PREDICTED: uncharacterized protein LOC100786116 [Glycine max]

 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 129/610 (21%), Positives = 247/610 (40%), Gaps = 42/610 (6%)

Query: 124 LSNDGSLFLSDSTDNDG----SVLENSWEGYEDDLFQNVFDKKDERSCIAGFVFEKGGTS 179
           LS +  L +S++ D D     SV++NS  G +     +V   +         +  +  + 
Sbjct: 115 LSENNDLTVSENQDLDENTALSVVQNSDMGIDSANDMDVQHPQLVAVSTPPIIQARTASP 174

Query: 180 GIIIKLGHKFKDEFQFRTAVDIQAMRDGIKLCVMENTSTFISCECSDLMCDWKVSAAKVR 239
              + +G +F D    R A+   A+    ++  +++  T  + +C+   C W++ AAK+ 
Sbjct: 175 SYELSVGQEFPDVKSCRRALRDTAIALHFEMQTIKSDKTRFTAKCASEGCPWRIHAAKLP 234

Query: 240 KSNVFVLKEITPNYTCKRRTYKFPLGRK-----WNAAKFLHLWVQNPNIDFHRLRYEIET 294
               F ++ I  N+TC   ++   LG +     W A        +NPN     +  EI  
Sbjct: 235 GVPTFTIRTIHENHTCGGISH---LGHQQASVQWVANSVEQRLKENPNCKPKEILEEIHR 291

Query: 295 YSGFKYPTWKLEAIDKTAKLWLRTYHNYGYERLFQYKNEMLTVNSNNIVIIQKKTFDDPD 354
             G      +     +     +R     GY  L QY  ++   N  +I  +     D   
Sbjct: 292 VHGITLSYKQAWRGKERIMAAMRGSFEEGYRLLPQYCEQVKRTNPGSIASVYGNQAD--- 348

Query: 355 LAVFDRMFVLFADCSHAFKITCRRLVIVDGWEIDSPYKSVMLVAVFRDANNAILPIAFCE 414
              F R+F+ F    + F    R L+ +D   + S Y   +L+A   D + A+ P+AF  
Sbjct: 349 -GCFQRLFISFQASIYGFLNAFRPLLGLDRTYLKSKYLGTLLLATGFDGDGALFPLAFGV 407

Query: 415 VQEENFDSWSFFLKNLYEGLCMDYMDYGKGICIMCDRDNGVDEAV-------------SD 461
           V EEN D+W +FL  L+  L +   +  + + I+ DR  G+ + V               
Sbjct: 408 VDEENDDNWMWFLSELHNLLEIHTENMLR-LTILSDRQKGIVDGVEASFPTAFHGFCMQH 466

Query: 462 LYNKLKEQFPLAPVYSLFWAACSRTNKVTFQQHMMLLQDRNKDCYGWLINREYHCWALYC 521
           L +  +++F    + +L W A +    + F+  ++ +++ ++D   W+       WA   
Sbjct: 467 LSDSFRKEFNNTMLVNLLWEAANALTVIEFEAKILEIEEISQDAAYWIRRIPPRLWATAY 526

Query: 522 MPEWAKSTDITISAAEQLRSWLLKYLDMNVANRFTAITRETVKIFEKSYLAGWDWVRDNI 581
             E  +   +T +  E L +W+L+   + +      I R+ +  F +       W    +
Sbjct: 527 F-EGHRFGHLTANIVESLNTWILEASGLPIIQMMECIRRQLMTWFNERRETSMQWT-SIL 584

Query: 582 TPAARQQTIQNVIEGDRWNIHSGANSNILTVTMNGLSFVVNKELSVCSCCLWQLSGIPCS 641
            P+A ++  + +     + +    ++    ++  G + +V+     C C  WQL G+PC+
Sbjct: 585 VPSAERRVAEALDRARTYQVLRANDAEFEVISHEGTN-IVDIRNRCCLCRGWQLYGLPCA 643

Query: 642 HACQCIIRWAGGYHDFVHVSMKIDVYRSTYGPGMKELPEICKW---------TPQLIDIV 692
           HA   ++      H F      +  YR TY   +  +P+   W           +  ++V
Sbjct: 644 HAVAALLSCRQNVHRFTESCFTVATYRKTYSQTIHPIPDKSLWKELSEGDANASKATEVV 703

Query: 693 QPPPKRLVDP 702
             PPK L  P
Sbjct: 704 INPPKSLRPP 713

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115489412|ref|NP_001067193.1| Os12g0597300 [Oryza sativa Japonica Group] gi|77556405|gb|ABA99201.1| transposon protein, putative, Mutator sub-class, expressed [Oryza sativa Japonica Group] gi|113649700|dbj|BAF30212.1| Os12g0597300 [Oryza sativa Japonica Group] gi|125579958|gb|EAZ21104.1| hypothetical protein OsJ_36747 [Oryza sativa Japonica Group]

 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 119/553 (21%), Positives = 228/553 (41%), Gaps = 39/553 (7%)

Query: 178 TSGIIIKLGHKFKDEFQFRTAVDIQAMRDGIKLCVMENTSTFISCECSDLMCDWKVSAAK 237
           +S   + +G +F D    R A+   A+    ++  +++  T  + +CS   C W++ AAK
Sbjct: 169 SSEFQLVVGQEFPDVMSCRRAIRNTAIACHFEIQTVKSDKTRFTAKCSADGCPWRIHAAK 228

Query: 238 VRKSNVFVLKEITPNYTCKRRTYKFPLGRK-----WNAAKFLHLWVQNPNIDFHRLRYEI 292
           +     F ++ I  N++C    +   LG +     W A        +NP+     +  EI
Sbjct: 229 LPGVPTFSIRTIHDNHSCVGINH---LGHQQASVQWVANTVEERLRENPHCKPKEILEEI 285

Query: 293 ETYSGFKYPTWKLEAIDKTAKLWLRTYHNYGYERLFQYKNEMLTVNSNNIVIIQKKTFDD 352
               G      +     +     +R     GY  L +Y  ++   N  +I     + + +
Sbjct: 286 HKSHGITLSYKQAWRGKERIMAAVRGSFEEGYRLLPEYCRQVERTNPGSIA----RVYGN 341

Query: 353 PDLAVFDRMFVLFADCSHAFKITCRRLVIVDGWEIDSPYKSVMLVAVFRDANNAILPIAF 412
           PD   F R+F+ F    + F   CR L+ +D   + + Y   + +A   D + A+ P+AF
Sbjct: 342 PDDNCFRRLFISFHASIYGFVNACRPLIGLDRTILKNKYLGTLFLATGFDGDGALFPLAF 401

Query: 413 CEVQEENFDSWSFFLKNLYEGLCMDYMDYGKGICIMCDRDNGVDEAV------------- 459
             V EE+ ++W +FL  L+E L  +  +  + + I+ DR  G+ + V             
Sbjct: 402 GVVDEESDENWIWFLSELHELLEKNTENMPR-LTILSDRRKGIIDGVDFNFPTAFHGHCM 460

Query: 460 SDLYNKLKEQFPLAPVYSLFWAACSRTNKVTFQQHMMLLQDRNKDCYGWLINREYHCWAL 519
             L    +++F  + + +L W A +    + F+  ++ ++D + +   W+       WA 
Sbjct: 461 RSLSETFRKEFNNSVLVNLLWEAANALTVIEFETKLLEIEDTSPEAVCWIRRLPPRLWAT 520

Query: 520 YCMPEWAKSTDITISAAEQLRSWLLKYLDMNVANRFTAITRETVKIFEKSYLAGWDWVRD 579
               E  +   +T +  E L SW+L    + +      I R+ +  F +   A   W   
Sbjct: 521 AYF-EGTRYGHLTANITESLNSWILDASGLPIIQMMECIRRQLMTWFNERREASMQWT-T 578

Query: 580 NITPAARQQTIQNVIEGDR-WNIHSGANSNILTVTMNGLSFVVNKELSVCSCCLWQLSGI 638
            + PAA ++ +Q  IE  R + +     +    ++ +  + +V+     C C  WQL G+
Sbjct: 579 ILVPAA-ERRVQEAIERARGYQVARANEAEFEVISPHEGTNIVDIRNRCCLCRGWQLYGV 637

Query: 639 PCSHACQCIIRWAGGYHDFVHVSMKIDVYRSTYGPGMKELPEICKWT---------PQLI 689
           PC+H    ++      H +      +  YR TY   +  +P+   W             +
Sbjct: 638 PCAHGVAALLSCRQNVHRYTESCFTVATYRKTYSQTIHPIPDKTLWNETSDQGQEEENKV 697

Query: 690 DIVQPPPKRLVDP 702
           D++  PPK L  P
Sbjct: 698 DVIINPPKSLRPP 710

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125676|ref|XP_002319648.1| predicted protein [Populus trichocarpa] gi|222858024|gb|EEE95571.1| predicted protein [Populus trichocarpa]

 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 114/547 (20%), Positives = 226/547 (41%), Gaps = 38/547 (6%)

Query: 183 IKLGHKFKDEFQFRTAVDIQAMRDGIKLCVMENTSTFISCECSDLMCDWKVSAAKVRKSN 242
           + +G +F D F  R A+   A+    ++  +++  T  + +C+   C W++ AAK+    
Sbjct: 7   LAVGQEFPDVFSCRRALRDTAIALHFEMQTIKSDKTRFTAKCATEGCPWRIHAAKLPGVP 66

Query: 243 VFVLKEITPNYTCKRRTYKFPLGRK-----WNAAKFLHLWVQNPNIDFHRLRYEIETYSG 297
            F ++ I  ++TC   ++   LG +     W A        +NPN     +  EI    G
Sbjct: 67  TFTIRTIHESHTCGGISH---LGHQQASVQWVANSVEQRLKENPNYRPKEILEEIHRVHG 123

Query: 298 FKYPTWKLEAIDKTAKLWLRTYHNYGYERLFQYKNEMLTVNSNNIVIIQKKTFDDPDLAV 357
                 +     +     +R     GY  L QY +++   N  +I  +    + +P    
Sbjct: 124 ITLSYKQAWRGKERIMAAMRGSFEEGYRLLPQYCDQVKRTNPGSIASV----YGNPTDNC 179

Query: 358 FDRMFVLFADCSHAFKITCRRLVIVDGWEIDSPYKSVMLVAVFRDANNAILPIAFCEVQE 417
           F  +F+ F    + F   CR L+ +D   + S Y   + +A   D + A+ P+AF  V E
Sbjct: 180 FQHLFISFQASIYGFLNACRPLLGLDRTFLKSKYLGTLFLATGFDGDGALFPLAFGVVDE 239

Query: 418 ENFDSWSFFLKNLYEGLCMDYMDYGKGICIMCDRDNGVDEAVS-------------DLYN 464
           EN ++W +FL  L+  L ++  +  + + I+ DR  G+ + V               L  
Sbjct: 240 ENDENWMWFLSELHNLLEINTENMPR-LTILSDRQKGIVDGVEANFPTAFHGFCMRHLSE 298

Query: 465 KLKEQFPLAPVYSLFWAACSRTNKVTFQQHMMLLQDRNKDCYGWLINREYHCWALYCMPE 524
             +++F    + +L W A      + F+  ++ +++ ++D   W+       WA     E
Sbjct: 299 SFRKEFNNTMLVNLLWEAAHALTVIEFEAKILEIEEVSQDAAYWIRRIPPRLWATAYF-E 357

Query: 525 WAKSTDITISAAEQLRSWLLKYLDMNVANRFTAITRETVKIFEKSYLAGWDWVRDNITPA 584
             +   +T +  E L +W+L+   + +      I R+ +  F +       W    + P+
Sbjct: 358 GTRFGHLTANIVESLNTWILEASGLPIIQMVECIRRQLMTWFNERRETSMQWT-SILVPS 416

Query: 585 ARQQTIQNVIEGDRWNIHSGANSNILTVTMNGLSFVVNKELSVCSCCLWQLSGIPCSHAC 644
           A ++  + +     + +     +    ++  G + +V+     C C  WQL G+PC+HA 
Sbjct: 417 AERRVAEALERARTYQVLRANEAEFEVISHEGTN-IVDIRNRCCLCRGWQLYGLPCAHAV 475

Query: 645 QCIIRWAGGYHDFVHVSMKIDVYRSTYGPGMKELPEICKW---------TPQLIDIVQPP 695
             ++      H F      +  YR TY   +  +P+   W         + + ++++  P
Sbjct: 476 AALLSCRQNVHRFTESCFTVATYRKTYSQTIHPIPDKSLWIEFSEGDPDSNKNVEVIINP 535

Query: 696 PKRLVDP 702
           PK L  P
Sbjct: 536 PKSLRPP 542

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125537276|gb|EAY83764.1| hypothetical protein OsI_38982 [Oryza sativa Indica Group]

 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 119/553 (21%), Positives = 228/553 (41%), Gaps = 39/553 (7%)

Query: 178 TSGIIIKLGHKFKDEFQFRTAVDIQAMRDGIKLCVMENTSTFISCECSDLMCDWKVSAAK 237
           +S   + +G +F D    R A+   A+    ++  +++  T  + +CS   C W++ AAK
Sbjct: 167 SSEFQLVVGQEFPDVMSCRRAIRNTAIACHFEIQTVKSDKTRFTAKCSADGCPWRIHAAK 226

Query: 238 VRKSNVFVLKEITPNYTCKRRTYKFPLGRK-----WNAAKFLHLWVQNPNIDFHRLRYEI 292
           +     F ++ I  N++C    +   LG +     W A        +NP+     +  EI
Sbjct: 227 LPGVPTFSIRTIHDNHSCVGINH---LGHQQASVQWVANTVEERLRENPHCKPKEILEEI 283

Query: 293 ETYSGFKYPTWKLEAIDKTAKLWLRTYHNYGYERLFQYKNEMLTVNSNNIVIIQKKTFDD 352
               G      +     +     +R     GY  L +Y  ++   N  +I     + + +
Sbjct: 284 HKSHGITLSYKQAWRGKERIMAAVRGSFEEGYRLLPEYCRQVERTNPGSIA----RVYGN 339

Query: 353 PDLAVFDRMFVLFADCSHAFKITCRRLVIVDGWEIDSPYKSVMLVAVFRDANNAILPIAF 412
           PD   F R+F+ F    + F   CR L+ +D   + + Y   + +A   D + A+ P+AF
Sbjct: 340 PDDNCFRRLFISFHASIYGFVNACRPLIGLDRTILKNKYLGTLFLATGFDGDGALFPLAF 399

Query: 413 CEVQEENFDSWSFFLKNLYEGLCMDYMDYGKGICIMCDRDNGVDEAV------------- 459
             V EE+ ++W +FL  L+E L  +  +  + + I+ DR  G+ + V             
Sbjct: 400 GVVDEESDENWIWFLSELHELLEKNTENMPR-LTILSDRRKGIIDGVDFNFPTAFHGHCM 458

Query: 460 SDLYNKLKEQFPLAPVYSLFWAACSRTNKVTFQQHMMLLQDRNKDCYGWLINREYHCWAL 519
             L    +++F  + + +L W A +    + F+  ++ ++D + +   W+       WA 
Sbjct: 459 RSLSETFRKEFNNSVLVNLLWEAANALTVIEFETKLLEIEDTSPEAVCWIRRLPPRLWAT 518

Query: 520 YCMPEWAKSTDITISAAEQLRSWLLKYLDMNVANRFTAITRETVKIFEKSYLAGWDWVRD 579
               E  +   +T +  E L SW+L    + +      I R+ +  F +   A   W   
Sbjct: 519 AYF-EGTRYGHLTANITESLNSWILDASGLPIIQMMECIRRQLMTWFNERREASMQWT-T 576

Query: 580 NITPAARQQTIQNVIEGDR-WNIHSGANSNILTVTMNGLSFVVNKELSVCSCCLWQLSGI 638
            + PAA ++ +Q  IE  R + +     +    ++ +  + +V+     C C  WQL G+
Sbjct: 577 ILVPAA-ERRVQEAIERARGYQVARANEAEFEVISPHEGTNIVDIRNRCCLCRGWQLYGV 635

Query: 639 PCSHACQCIIRWAGGYHDFVHVSMKIDVYRSTYGPGMKELPEICKWT---------PQLI 689
           PC+H    ++      H +      +  YR TY   +  +P+   W             +
Sbjct: 636 PCAHGVAALLSCRQNVHRYTESCFTVATYRKTYSQTIHPIPDKTLWNETSDQGQEEENKV 695

Query: 690 DIVQPPPKRLVDP 702
           D++  PPK L  P
Sbjct: 696 DVIINPPKSLRPP 708

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|308081269|ref|NP_001183476.1| uncharacterized protein LOC100501908 [Zea mays] gi|238011782|gb|ACR36926.1| unknown [Zea mays]

 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 117/550 (21%), Positives = 222/550 (40%), Gaps = 41/550 (7%)

Query: 183 IKLGHKFKDEFQFRTAVDIQAMRDGIKLCVMENTSTFISCECSDLMCDWKVSAAKVRKSN 242
           + +G +F D    R A+   A+    ++  +++  T  + +C+   C W++ AAK+    
Sbjct: 219 LAVGQEFPDVMSCRRAIRSTAIACHFEIQTVKSDKTRFTAKCAAEGCPWRIHAAKLAGVP 278

Query: 243 VFVLKEITPNYTCKRRTYKFPLGRK-----WNAAKFLHLWVQNPNIDFHRLRYEIETYSG 297
            F ++ I   ++C   ++   LG +     W A        +NP      +  EI    G
Sbjct: 279 TFSIRTIHDTHSCVGISH---LGHQQASVQWVATTVEERLRENPQCKPKEILEEIHKAHG 335

Query: 298 FKYPTWKLEAIDKTAKLWLRTYHNYGYERLFQYKNEMLTVNSNNIVIIQKKTFDDPDLAV 357
                 +     +     +R     GY  L +Y  ++   N  +I     + + +PD + 
Sbjct: 336 ITLSYKQAWRGKERIMAAVRGSFEEGYRLLPEYCRQVERTNPGSIA----RVYGNPDDSC 391

Query: 358 FDRMFVLFADCSHAFKITCRRLVIVDGWEIDSPYKSVMLVAVFRDANNAILPIAFCEVQE 417
           F R+F+ F    + F   CR L+ +D   + + Y   + +A   D +  + P+AF  V E
Sbjct: 392 FRRLFISFNASIYGFINACRPLIGLDRTLLKNKYLGTLFLATGFDGDGDLFPLAFGVVDE 451

Query: 418 ENFDSWSFFLKNLYEGLCMDYMDYGKGICIMCDRDNGVDEAVS-------------DLYN 464
           E  ++W +FL  L+E L  +  +  + + I+ DR  G+ + V               +  
Sbjct: 452 ETDENWVWFLSELHELLEKNTENMPR-LTILSDRQKGITDGVEFNFPTAFHGYCMRHVSE 510

Query: 465 KLKEQFPLAPVYSLFWAACSRTNKVTFQQHMMLLQDRNKDCYGWLINREYHCWALYCMPE 524
             K++F    + +L W A      + F+  ++ ++D +++   W+ +     WA     E
Sbjct: 511 TFKKEFSNPVLVNLLWEAAHALTVIEFETKLLEIEDMSQEAAVWIRHLPPRLWATAYF-E 569

Query: 525 WAKSTDITISAAEQLRSWLLKYLDMNVANRFTAITRETVKIFEKSYLAGWDWVRDNITPA 584
             +   +T S  E L SW+L    + V      I R+ +  F +   A   W    I   
Sbjct: 570 GTRYGHLTASITESLSSWILDAAGLPVTQMMECIRRQLMTWFNERREASMQW--STILVP 627

Query: 585 ARQQTIQNVIEGDR-WNIHSGANSNILTVTMNGLSFVVNKELSVCSCCLWQLSGIPCSHA 643
           A ++ +Q  IE  R + +     +    V+ +  + +V+     C C  WQL G+PC+H 
Sbjct: 628 AAERRVQEAIERARGYQVARANEAEFEVVSAHEGTNIVDIRNRCCLCRGWQLYGVPCAHG 687

Query: 644 CQCIIRWAGGYHDFVHVSMKIDVYRSTYGPGMKELPEICKWTPQL-----------IDIV 692
              ++      H +      +  YR TY   +  +P+   W+               ++V
Sbjct: 688 VAALLSCRQNVHRYAESCFTVATYRKTYSQTIHPIPDKTLWSETADQDQGQDGEVKAEMV 747

Query: 693 QPPPKRLVDP 702
             PPK L  P
Sbjct: 748 INPPKSLRPP 757

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452988|ref|XP_002262784.1| PREDICTED: uncharacterized protein LOC100258751 [Vitis vinifera] gi|147858253|emb|CAN83921.1| hypothetical protein VITISV_011842 [Vitis vinifera]

 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 116/545 (21%), Positives = 223/545 (40%), Gaps = 38/545 (6%)

Query: 185 LGHKFKDEFQFRTAVDIQAMRDGIKLCVMENTSTFISCECSDLMCDWKVSAAKVRKSNVF 244
           +G +F D    R A+   A+    ++  +++  T  + +C+   C W++ AAK+     F
Sbjct: 177 VGQEFPDVKSCRRALRDTAIALHFEMQTIKSDKTRFTAKCASDGCPWRIHAAKLPGVPTF 236

Query: 245 VLKEITPNYTCKRRTYKFPLGRK-----WNAAKFLHLWVQNPNIDFHRLRYEIETYSGFK 299
            ++ I   +TC    +   LG +     W A        +NPN     +  EI    G  
Sbjct: 237 TIRTIHEAHTCGGIAH---LGHQQASVQWVANSVEQRLRENPNYKPKEILEEIHRVHGIT 293

Query: 300 YPTWKLEAIDKTAKLWLRTYHNYGYERLFQYKNEMLTVNSNNIVIIQKKTFDDPDLAVFD 359
               +     +     +R     GY  L QY +++   N  +I  +    + +P    F 
Sbjct: 294 LSYKQAWRGKERIMAAMRGSFEEGYRLLPQYCDQVKRTNPGSIASV----YGNPTDNCFQ 349

Query: 360 RMFVLFADCSHAFKITCRRLVIVDGWEIDSPYKSVMLVAVFRDANNAILPIAFCEVQEEN 419
           R+F+ F    + F   CR L+ +D   + S Y   +L A   D + A+ P+AF  V EEN
Sbjct: 350 RLFISFQASIYGFLNACRPLLGLDRTFLKSKYLGTLLFATGFDGDGALFPLAFGVVDEEN 409

Query: 420 FDSWSFFLKNLYEGLCMDYMDYGKGICIMCDRDNGVDEAVS-------------DLYNKL 466
            ++W +FL  L+  L ++  +  + + I+ DR  G+ + V               L +  
Sbjct: 410 DENWMWFLSELHNLLEVNTENMPR-LTILSDRQKGIVDGVEANFPTAFHGFCMRHLSDSF 468

Query: 467 KEQFPLAPVYSLFWAACSRTNKVTFQQHMMLLQDRNKDCYGWLINREYHCWALYCMPEWA 526
           +++F    + +L W A      + F+  ++ +++ ++D   W+       WA     E  
Sbjct: 469 RKEFNNTMLVNLLWEAAHALTVIEFEAKILEIEEISQDAAYWIRRIPPRLWATAYF-EGT 527

Query: 527 KSTDITISAAEQLRSWLLKYLDMNVANRFTAITRETVKIFEKSYLAGWDWVRDNITPAAR 586
           +   +T +  E L +W+L+   + +      I R+ +  F +       W    + P+A 
Sbjct: 528 RFGHLTANIVESLNTWILEASGLPIIQMMECIRRQLMTWFNERRETSMQWT-SILVPSAE 586

Query: 587 QQTIQNVIEGDRWNIHSGANSNILTVTMNGLSFVVNKELSVCSCCLWQLSGIPCSHACQC 646
           ++  + +     + +     +    ++  G + +V+     C C  WQL G+PC+HA   
Sbjct: 587 RRVAEALERARTYQVLRANEAEFEVISHEGTN-IVDIRNRCCLCRGWQLYGLPCAHAVAA 645

Query: 647 IIRWAGGYHDFVHVSMKIDVYRSTYGPGMKELPEICKWT---------PQLIDIVQPPPK 697
           ++      H F      +  YR TY   +  +P+   W           + ++I+  PPK
Sbjct: 646 LLSCRQNVHRFTESCFTVATYRKTYSQTIHPIPDKTLWKELSEGDPNGSKSVEIMINPPK 705

Query: 698 RLVDP 702
            L  P
Sbjct: 706 SLRPP 710

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|293337036|ref|NP_001168705.1| uncharacterized protein LOC100382497 [Zea mays] gi|223950329|gb|ACN29248.1| unknown [Zea mays] gi|224030155|gb|ACN34153.1| unknown [Zea mays]

 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 115/542 (21%), Positives = 222/542 (40%), Gaps = 36/542 (6%)

Query: 183 IKLGHKFKDEFQFRTAVDIQAMRDGIKLCVMENTSTFISCECSDLMCDWKVSAAKVRKSN 242
           + +G +F D    R A+   A+    ++  +++  +  + +C+   C W++ AAK+    
Sbjct: 179 LAVGQQFPDVVSCRRAIRNTAIACHFEIQTVKSDKSRFTAKCAAESCPWRIHAAKLPGVP 238

Query: 243 VFVLKEITPNYTCKRRTYKFPLGRK-----WNAAKFLHLWVQNPNIDFHRLRYEIETYSG 297
            F ++ I  N++C    +   LG +     W A        +NP      +  EI    G
Sbjct: 239 TFSIRTIHDNHSCVGINH---LGHQQASVQWVANTVEERLRENPEYKPKEILEEIHKAHG 295

Query: 298 FKYPTWKLEAIDKTAKLWLRTYHNYGYERLFQYKNEMLTVNSNNIVIIQKKTFDDPDLAV 357
                 +     +     +R     GY  L +Y  ++   N  +I     + + +PD   
Sbjct: 296 ITLSYKQAWRGKERIMAAVRGSFEEGYRLLPEYCRQVERTNPGSIA----RVYGNPDDNC 351

Query: 358 FDRMFVLFADCSHAFKITCRRLVIVDGWEIDSPYKSVMLVAVFRDANNAILPIAFCEVQE 417
           F R+F+ F+     F   CR L+ +D   + + Y   + +A   D + A+ P+AF  V E
Sbjct: 352 FRRLFISFSASIFGFVNACRPLIGLDRTLLKNKYLGTLFLATGFDGDGALFPLAFGVVDE 411

Query: 418 ENFDSWSFFLKNLYEGLCMDYMDYGKGICIMCDRDNGVDEAVS-------------DLYN 464
           E  ++W +FL  L+E L  +  +  + + I+ DR  G+ + V               +  
Sbjct: 412 ETDENWVWFLSELHELLEKNTENMPR-LTILSDRRKGITDGVEFNFPTAFHGYCMRHVSE 470

Query: 465 KLKEQFPLAPVYSLFWAACSRTNKVTFQQHMMLLQDRNKDCYGWLINREYHCWALYCMPE 524
             K++F    + +L W A      + F+  ++ ++D + +   W+ +     WA     E
Sbjct: 471 AFKKEFNNPVLANLLWEAAHALTVIEFETKLLEIEDASPEAVVWIRHLPSRLWATAYF-E 529

Query: 525 WAKSTDITISAAEQLRSWLLKYLDMNVANRFTAITRETVKIFEKSYLAGWDWVRDNITPA 584
             +   +T + AE L SW+L    + +      I R+ +  F +   A   W  + I   
Sbjct: 530 GTRYGHLTANIAESLNSWILDASGLPIVQMMECIRRQLMTWFNERREASMQW--NTILVP 587

Query: 585 ARQQTIQNVIEGDR-WNIHSGANSNILTVTMNGLSFVVNKELSVCSCCLWQLSGIPCSHA 643
           A ++ +Q  IE  R + +     +    ++ +  + VV+     C C  WQL G+PC+H 
Sbjct: 588 AAERRVQEAIERARGYQVARANEAEFEVISAHEGTNVVDIRNRCCLCRGWQLYGVPCAHG 647

Query: 644 CQCIIRWAGGYHDFVHVSMKIDVYRSTYGPGMKELPEICKWTPQL------IDIVQPPPK 697
              ++      H +      +  YR TY   +  +P+   W          ++++  PPK
Sbjct: 648 VAALLSCRQNVHRYTESCFTVATYRKTYSQTIHPIPDRTLWDETADQGQVKVEMIINPPK 707

Query: 698 RL 699
            L
Sbjct: 708 SL 709

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	714
TAIR|locus:2014230	719	AT1G64260 "AT1G64260" [Arabido	0.712	0.707	0.207	7.2e-16
TAIR|locus:2197122	785	AT1G49920 "AT1G49920" [Arabido	0.264	0.240	0.244	5.4e-15
TAIR|locus:1006230722	750	AT1G64255 [Arabidopsis thalian	0.456	0.434	0.226	1.2e-13

TAIR|locus:2014230 AT1G64260 "AT1G64260" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 7.2e-16, P = 7.2e-16
 Identities = 111/535 (20%), Positives = 210/535 (39%)

Query:   185 LGHKFKDEFQFRTAVDIQAMRDGIKLCVMENTSTFISCECSDLMCDWKVSAAKVRKSNVF 244
             LG  FKD  + + AVD   +R      V E      + EC    C W + AA++ +  + 
Sbjct:   187 LGLCFKDRDELKKAVDWWCIRRRRNCIVRETEKEMYTFECVRWKCKWSLRAARMEEHGLV 246

Query:   245 VLKEITPNYTCKRRTYKFPLGRKWNAAKFLHLWVQNPNIDFHRLRYEIETYSGFKYPTWK 304
              + + T  +TC    Y      ++ A +   +    P +    L+   +  +G++  T K
Sbjct:   247 EITKYTGPHTCSHE-YPNDFESEFAADEIERVVRIQPTLSIAELKKWWKEKTGYELQTSK 305

Query:   305 LEAIDKTAKLWLRTYHNYGYERLFQYKNEMLTVNSNNIVII-QKKTFDDPDLAVFDRMFV 363
             +   D   ++  R + +         K      +SN +++  Q   F +PD A F  +F 
Sbjct:   306 MR--DGKLEVIKRVFGDEDQSFRVMPKLISAFHSSNGLLVDWQYDLFPNPDFASFRGVFW 363

Query:   364 LFADCSHAFKITCRRLVIVDGWEIDSPYKSVMLVAVFRDANNAILPIAFCEVQEENFDSW 423
              F+     F+  CR L++VD   ++  Y+  +++A   DA N   P+AF   +E + DSW
Sbjct:   364 SFSQSIEGFQ-HCRPLIVVDTKSLNGKYQLKLMIASGVDAANKFFPLAFAVTKEVSTDSW 422

Query:   424 SFFLKNLYE------GLCMDYMDYGKGICIMCDRDNGVDEAVSD---LYNKLKEQF-PLA 473
              +F   + E       LC+        + ++ +  +   E  +      N L+ QF  + 
Sbjct:   423 RWFFTKIREKVTQRKDLCLISSPLRDIVAVVNEPGSLWQEPWAHHKFCLNHLRSQFLGVF 482

Query:   474 PVY---SLFWAACSRTNKVTFQQHMMLLQDRNKDCYGWLINREYHCWALYCMPEWAKSTD 530
               Y   SL   A S   K  F  +M  ++++N + + WL     H WAL       +   
Sbjct:   483 RDYNLESLVEQAGSTNQKEEFDSYMNDIKEKNPEAWKWLDQIPRHKWAL-AHDSGLRYGI 541

Query:   531 ITISAAEQLRSWL--LKYLDMNVANRFTAITRETVKIFEKSYLAGWDWVRDNI--TPAAR 586
             I I   E L +      Y  + +      +  E    F+KS  + +  +   +  T    
Sbjct:   542 IEIDR-EALFAVCRGFPYCTVAMTGGVMLMFDELRSSFDKSLSSIYSSLNRGVVYTEPFM 600

Query:   587 QQTIQNVIEGDRWNIHSGANSNI-LTVTMNGLSFVVNKELSVCSCCLWQLSGIPCSHACQ 645
              +  + + +   + I      +  ++ +     ++V   +S C+C  +Q    PC HA  
Sbjct:   601 DKLEEFMTDSIPYVITQLERDSFKVSESSEKEEWIVQLNVSTCTCRKFQSYKFPCLHALA 660

Query:   646 CIIRWAGGYHDFVHVSMKIDVYRSTYGPGMKELPEICKWTPQL-IDIVQPPPKRL 699
                +       +V     ++ Y  TY      +P++  W     +  + PP ++L
Sbjct:   661 VFEKLKINPLQYVDECYTVEQYCKTYAATFSPVPDVAAWPEDCRVPTLFPPSQQL 715

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2197122 AT1G49920 "AT1G49920" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 5.4e-15, Sum P(3) = 5.4e-15
 Identities = 54/221 (24%), Positives = 106/221 (47%)

Query:   324 YERLFQYKNEMLTV-NSNNIVIIQKKTFD----DPDLAVFDRMFVLFADCSHAFKITCRR 378
             +++ F+   ++++V +S+N +++  + +D    DP+ A F  +F  F+     F+  CR 
Sbjct:   323 WDQSFRLIPKLMSVLHSSNGLLVDWQ-YDSLTHDPEHASFRGLFWAFSQSIQGFQ-HCRP 380

Query:   379 LVIVDGWEIDSPYKSVMLVAVFRDANNAILPIAFCEVQEENFDSWSFFLKNLYEGLCMDY 438
             L++VD   +   YK  +++A   DA N   P+AF   +E + DSW +FL  + E +    
Sbjct:   381 LIVVDTKNLGGKYKMKLMIASAFDATNQYFPLAFAVTKEVSVDSWRWFLTRIREKVTQR- 439

Query:   439 MDYGKGICIMCDRDNGVDEAVSD---------------LYNKLKEQFPLAPV--YSLFWA 481
                 +GIC++   D  +   +++               LY+   +   ++P   Y++ + 
Sbjct:   440 ----QGICLISSPDPDILAVINEPGSQWKEPWAYHRFCLYHLCSKLCSVSPGFDYNMHFL 495

Query:   482 ---ACSRTNKVTFQQHMMLLQDRNKDCYGWLINREYHCWAL 519
                A S + K  F  +M  +++RN + + WL     H WAL
Sbjct:   496 VDEAGSSSQKEEFDSYMKEIKERNPEAWKWLDQFPPHQWAL 536

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:1006230722 AT1G64255 [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
 Identities = 81/358 (22%), Positives = 157/358 (43%)

Query:   183 IKLGHKFKDEFQFRTAVDIQAMRDGIKLCVMENTSTFISCECSDLMCDWKVSAAKVRKSN 242
             +++G  FKD  + + AVD  +++   K  V E        EC    C W + AA+++K  
Sbjct:   192 LRVGLCFKDGDELKKAVDWCSLKAQQKCVVRETAKDEYIFECIRWKCKWSLGAARMKKHG 251

Query:   243 VFVLKEITPNYTCKR---RTYK--FPLGRKWNAAKFLHLWVQNPNIDF--HRLRYEIETY 295
             +  + + T  +TC       +K  F       A +++     +    +   ++ YE+ET 
Sbjct:   252 LVEIIKYTGPHTCHPIVPEDFKSEFETDEIERAVRYMPTQTISELKKWWKKKIGYELET- 310

Query:   296 SGFKYPTWKLEAIDKTAKLWLRTYHNYGYERLFQYKNEMLTVNSNNIVIIQK-KTFDDPD 354
             S  +    K +AI +    W +++ ++   +L          +SN +++  K   F +P+
Sbjct:   311 SDVRLA--KEKAIKRVFGDWDQSFEDF--PKLMS-----ALCSSNGLLVDWKYDLFPNPN 361

Query:   355 LAVFDRMFVLFADCSHAFKITCRRLVIVDGWEIDSPYKSVMLVAVFRDANNAILPIAFCE 414
              A F  +F  F      F+  CR L++VD   ++  Y+  +++A   DA N   P+AF  
Sbjct:   362 FASFCGVFWAFPQSIEGFQ-HCRPLIVVDTKNLNCEYQLKLMIASGVDAANKYFPLAFAV 420

Query:   415 VQEENFDSWSFFLKNLYE------GLCMDYMDYGKGICIMCDRDNGVDE-------AVSD 461
              +E + D W +FL  + E      GLC+    +   I ++ +  +   E       +++ 
Sbjct:   421 TKEVSTDIWRWFLTGIREKVTQRKGLCLISSPHPDIIAVVNESGSQWQEPWAYHRFSLNH 480

Query:   462 LYNKLKEQFPLAPVYSLFWAACSRTNKVTFQQHMMLLQDRNKDCYGWLINREYHCWAL 519
              Y++    FP   + +    A S + K  F  +M  ++++N +   WL     + WAL
Sbjct:   481 FYSQFSRVFPSFCLGARIRRAGSTSQKDEFVSYMNDIKEKNPEARKWLDQFPQNRWAL 538

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: BRADI2G19940.1 annotation not avaliable (748 aa) (Brachypodium distachyon)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	714
pfam10551	88	pfam10551, MULE, MULE transposase domain	8e-07
pfam03108	67	pfam03108, DBD_Tnp_Mut, MuDR family transposase	6e-06
smart00575	28	smart00575, ZnF_PMZ, plant mutator transposase zin	7e-05

>gnl|CDD|220806 pfam10551, MULE, MULE transposase domain

 Score = 47.0 bits (112), Expect = 8e-07
 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 5/72 (6%)

Query: 392 KSVMLVAVFRDANNAILPIAFCEVQEENFDSWSFFLKNLYEGLCMDYMDYGKGICIMCDR 451
            +    AV  D +    P+AF  V +E+ +SW++FL+ L        +     + I+ D 
Sbjct: 5   TNKYKGAVGVDHHGQGFPLAFALVSDESEESWTWFLEGL-----KKALGGRPPLTIISDG 59

Query: 452 DNGVDEAVSDLY 463
           D G+ +A+ +++
Sbjct: 60  DKGLKKAIKEVF 71

This domain was identified by Babu and colleagues. Length = 88

>gnl|CDD|190526 pfam03108, DBD_Tnp_Mut, MuDR family transposase

 Score = 43.7 bits (104), Expect = 6e-06
 Identities = 19/66 (28%), Positives = 37/66 (56%)

Query: 180 GIIIKLGHKFKDEFQFRTAVDIQAMRDGIKLCVMENTSTFISCECSDLMCDWKVSAAKVR 239
           G  +++G  FK + +F+ AV   A+++  +  V ++  T    +C D  C W+V A+K++
Sbjct: 1   GPELEVGQVFKSKEEFKKAVRKYAIKNRFEFKVKKSDKTRYRAKCKDEGCPWRVRASKLK 60

Query: 240 KSNVFV 245
            S+ F 
Sbjct: 61  DSDTFQ 66

This region is found in plant proteins that are presumed to be the transposases for Mutator transposable elements. These transposons contain two ORFs. The molecular function of this region is unknown. Length = 67

>gnl|CDD|128845 smart00575, ZnF_PMZ, plant mutator transposase zinc finger

 Score = 39.8 bits (94), Expect = 7e-05
 Identities = 12/16 (75%), Positives = 13/16 (81%)

Query: 628 CSCCLWQLSGIPCSHA 643
           CSC  +QLSGIPC HA
Sbjct: 3   CSCRKFQLSGIPCRHA 18

Length = 28

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	714
PLN03097	846	FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis	100.0
PF03108	67	DBD_Tnp_Mut: MuDR family transposase; InterPro: IP	99.67
PF10551	93	MULE: MULE transposase domain; InterPro: IPR018289	99.55
PF00872	381	Transposase_mut: Transposase, Mutator family; Inte	99.49
COG3328	379	Transposase and inactivated derivatives [DNA repli	98.87
smart00575	28	ZnF_PMZ plant mutator transposase zinc finger.	98.84
PF08731	111	AFT: Transcription factor AFT; InterPro: IPR014842	98.54
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	98.37
PF04434	40	SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc f	98.07
cd06410	97	PB1_UP2 Uncharacterized protein 2. The PB1 domain	97.47
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	91.84
PF13610	140	DDE_Tnp_IS240: DDE domain	91.39
PF04684	496	BAF1_ABF1: BAF1 / ABF1 chromatin reorganising fact	91.24
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	88.22
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	81.69
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	81.55
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	81.08
PF00665	120	rve: Integrase core domain; InterPro: IPR001584 In	81.0
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	80.75

>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

Probab=100.00  E-value=2.9e-64  Score=584.36  Aligned_cols=449  Identities=13%  Similarity=0.131  Sum_probs=360.7

Q ss_pred             CcccccCceeCCHHHHHHHHHHHHHHcCeeEEEEeecce-------EEEEEecc--------------------------
Q 037723          180 GIIIKLGHKFKDEFQFRTAVDIQAMRDGIKLCVMENTST-------FISCECSD--------------------------  226 (714)
Q Consensus       180 ~~~~~vG~~F~s~ee~r~ai~~yAi~~~f~ir~~ks~~~-------r~~~~C~~--------------------------  226 (714)
                      +.++.+||+|.|.++++++|..||...||.+|+.++.+.       ..+++|++                          
T Consensus        71 ~~~P~vGMeF~S~eeA~~FYn~YA~~~GFsVRi~~srrsk~~~~ii~r~fvCsreG~~~~~~~~~~~~~~~~~k~~~~~~  150 (846)
T PLN03097         71 NLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQTKQDPENG  150 (846)
T ss_pred             CccCcCCCeECCHHHHHHHHHHHHhhcCceEEeeceeccCCCCcEEEEEEEEcCCCCCcccccccccccccccccCcccc
Confidence            445899999999999999999999999999988655432       23456654                          


Q ss_pred             --------CCCceEEEEEEecCCCeEEEeeeCCCCcccCccccCCcCchhhHHHHhhhhhcCCCCCHHHHHHHHHHhcC-
Q 037723          227 --------LMCDWKVSAAKVRKSNVFVLKEITPNYTCKRRTYKFPLGRKWNAAKFLHLWVQNPNIDFHRLRYEIETYSG-  297 (714)
Q Consensus       227 --------~gCpWri~as~~~~~~~~~V~~~~~~HnC~~~~~~~~~ss~~ia~~~~~~i~~~p~~~~~~I~~~l~~~~g-  297 (714)
                              +|||++|.+.+ ...+.|.|..++.+|||++...... +                 ...+.+...+....+ 
T Consensus       151 ~~rR~~tRtGC~A~m~Vk~-~~~gkW~V~~fv~eHNH~L~p~~~~-~-----------------~~~r~~~~~~~~~~~~  211 (846)
T PLN03097        151 TGRRSCAKTDCKASMHVKR-RPDGKWVIHSFVKEHNHELLPAQAV-S-----------------EQTRKMYAAMARQFAE  211 (846)
T ss_pred             cccccccCCCCceEEEEEE-cCCCeEEEEEEecCCCCCCCCcccc-c-----------------hhhhhhHHHHHhhhhc
Confidence                    47999999977 4568899999999999999865421 1                 011122222222111 


Q ss_pred             ---CCh-h------hhhhHHhhHHHHHHhhcchhhhHHHHHHHHHHHHhcCCCcEEEEEecccCCCCccccceeEEechH
Q 037723          298 ---FKY-P------TWKLEAIDKTAKLWLRTYHNYGYERLFQYKNEMLTVNSNNIVIIQKKTFDDPDLAVFDRMFVLFAD  367 (714)
Q Consensus       298 ---isy-k------~~rak~~~~~~~~~~~g~~~~~y~~L~~y~~~l~~~NPgs~~~v~~~~~~~~~~~~f~~lF~~~~~  367 (714)
                         +.. +      ..+.+++     + +   ..++.+.|..|+++++..||+|+|.+++|    ++ ++++++||+++.
T Consensus       212 ~~~v~~~~~d~~~~~~~~r~~-----~-~---~~gD~~~ll~yf~~~q~~nP~Ffy~~qlD----e~-~~l~niFWaD~~  277 (846)
T PLN03097        212 YKNVVGLKNDSKSSFDKGRNL-----G-L---EAGDTKILLDFFTQMQNMNSNFFYAVDLG----ED-QRLKNLFWVDAK  277 (846)
T ss_pred             cccccccchhhcchhhHHHhh-----h-c---ccchHHHHHHHHHHHHhhCCCceEEEEEc----cC-CCeeeEEeccHH
Confidence               111 0      0011111     1 1   23466789999999999999999999999    56 899999999999


Q ss_pred             hhHHHhhhCCcEEEeeceeeccCCCcceeEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHhccccccCCCCcEEE
Q 037723          368 CSHAFKITCRRLVIVDGWEIDSPYKSVMLVAVFRDANNAILPIAFCEVQEENFDSWSFFLKNLYEGLCMDYMDYGKGICI  447 (714)
Q Consensus       368 s~~~f~~~~r~Vi~iD~T~~~~ky~g~Ll~avG~D~n~~~~plAfa~v~~E~~esw~WfL~~l~~~l~~~~~~~~~~~~i  447 (714)
                      |+.+|.+ |++||.||+||++|+|++||.++||+|+|+|+++|||||+.+|+.|+|.|+|++|+++|++     ..|.+|
T Consensus       278 sr~~Y~~-FGDvV~fDTTY~tN~y~~Pfa~FvGvNhH~qtvlfGcaLl~dEt~eSf~WLf~tfl~aM~g-----k~P~tI  351 (846)
T PLN03097        278 SRHDYGN-FSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGG-----QAPKVI  351 (846)
T ss_pred             HHHHHHh-cCCEEEEeceeeccccCcEEEEEEEecCCCCeEEEEEEEcccCchhhHHHHHHHHHHHhCC-----CCCceE
Confidence            9999999 9999999999999999999999999999999999999999999999999999999999985     689999


Q ss_pred             EcCCchHHHHHHHHHH-------------HHHHhhCC-----CchhhhHHHHHHh-hhhHHHHHHHHHHHhh-cCchhhh
Q 037723          448 MCDRDNGVDEAVSDLY-------------NKLKEQFP-----LAPVYSLFWAACS-RTNKVTFQQHMMLLQD-RNKDCYG  507 (714)
Q Consensus       448 isD~~~gl~~Ai~~vf-------------~n~~~~~~-----~~~l~~~~~~~~~-a~t~~eF~~~~~~l~~-~~~~~~~  507 (714)
                      |||++.+|.+||++||             +|..+++.     .+.|...|++|++ +.+++||+..|..|.+ ++.+.++
T Consensus       352 iTDqd~am~~AI~~VfP~t~Hr~C~wHI~~~~~e~L~~~~~~~~~f~~~f~~cv~~s~t~eEFE~~W~~mi~ky~L~~n~  431 (846)
T PLN03097        352 ITDQDKAMKSVISEVFPNAHHCFFLWHILGKVSENLGQVIKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDE  431 (846)
T ss_pred             EecCCHHHHHHHHHHCCCceehhhHHHHHHHHHHHhhHHhhhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccccH
Confidence            9999999999999999             33444432     3588899999887 6799999999999976 7899999


Q ss_pred             HHhcc--ccccceecccCCCcccccccCChhHHHHHHHhhh--hcCCHHHHHHHHHHHHHHHHHHhhhhhhh--------
Q 037723          508 WLINR--EYHCWALYCMPEWAKSTDITISAAEQLRSWLLKY--LDMNVANRFTAITRETVKIFEKSYLAGWD--------  575 (714)
Q Consensus       508 ~L~~~--~~~~Wa~a~~~~~~~~g~~TtN~~Es~N~~ik~~--r~~pi~~lve~i~~~~~~~f~r~k~~~~~--------  575 (714)
                      ||..+  .+++|+++|+++.++.|+.||+++||+|++|++.  +..+|..|++.+ .+++.......+...+        
T Consensus       432 WL~~LY~~RekWapaY~k~~F~agm~sTqRSES~Ns~fk~yv~~~tsL~~Fv~qy-e~~l~~~~ekE~~aD~~s~~~~P~  510 (846)
T PLN03097        432 WMQSLYEDRKQWVPTYMRDAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQY-ETILQDRYEEEAKADSDTWNKQPA  510 (846)
T ss_pred             HHHHHHHhHhhhhHHHhcccccCCcccccccccHHHHHHHHhCcCCCHHHHHHHH-HHHHHHHHHHHHHhhhhcccCCcc
Confidence            99996  7999999999999999999999999999999994  678899998887 4444322111111111        


Q ss_pred             ------hhc---cCCChHHHHHHHHHHHhcCccceEEeec-C---ceEEEEe--CCeEEEEecC----Cccccccccccc
Q 037723          576 ------WVR---DNITPAARQQTIQNVIEGDRWNIHSGAN-S---NILTVTM--NGLSFVVNKE----LSVCSCCLWQLS  636 (714)
Q Consensus       576 ------~~r---~~~tp~~~~~klq~~~~~s~~~~v~~~~-~---~~feV~~--~~~~~~V~l~----~~tCSC~~~q~~  636 (714)
                            .++   ..|||.+|+ +||+++..+..|.+...+ +   .+|.|.+  ....|.|..+    +.+|+|++|+..
T Consensus       511 l~t~~piEkQAs~iYT~~iF~-kFQ~El~~~~~~~~~~~~~dg~~~~y~V~~~~~~~~~~V~~d~~~~~v~CsC~kFE~~  589 (846)
T PLN03097        511 LKSPSPLEKSVSGVYTHAVFK-KFQVEVLGAVACHPKMESQDETSITFRVQDFEKNQDFTVTWNQTKLEVSCICRLFEYK  589 (846)
T ss_pred             cccccHHHHHHHHHhHHHHHH-HHHHHHHHhhheEEeeeccCCceEEEEEEEecCCCcEEEEEecCCCeEEeeccCeecC
Confidence                  111   129999999 999999999988876543 2   3788876  3456777553    689999999999


Q ss_pred             cCcccchhhHHHHhcC--Ccccccccceehhhhhh
Q 037723          637 GIPCSHACQCIIRWAG--GYHDFVHVSMKIDVYRS  669 (714)
Q Consensus       637 GiPC~Haiav~~~~~~--~~~~yV~~~yt~~~~~~  669 (714)
                      ||||+|||+|+...++  +|..||.++||+++-..
T Consensus       590 GILCrHaLkVL~~~~v~~IP~~YILkRWTKdAK~~  624 (846)
T PLN03097        590 GYLCRHALVVLQMCQLSAIPSQYILKRWTKDAKSR  624 (846)
T ss_pred             ccchhhHHHHHhhcCcccCchhhhhhhchhhhhhc
Confidence            9999999999999997  79999999999998654

>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ]

Probab=99.67  E-value=2e-16  Score=130.23  Aligned_cols=67  Identities=25%  Similarity=0.545  Sum_probs=64.7

Q ss_pred             CcccccCceeCCHHHHHHHHHHHHHHcCeeEEEEeecceEEEEEeccCCCceEEEEEEecCCCeEEE
Q 037723          180 GIIIKLGHKFKDEFQFRTAVDIQAMRDGIKLCVMENTSTFISCECSDLMCDWKVSAAKVRKSNVFVL  246 (714)
Q Consensus       180 ~~~~~vG~~F~s~ee~r~ai~~yAi~~~f~ir~~ks~~~r~~~~C~~~gCpWri~as~~~~~~~~~V  246 (714)
                      ||.|.+||+|+|++||+.||..||++++|++++.+|+++|++++|...||||+|+|++.++++.|+|
T Consensus         1 n~~l~~G~~F~~~~e~k~av~~yai~~~~~~~v~ksd~~r~~~~C~~~~C~Wrv~as~~~~~~~~~I   67 (67)
T PF03108_consen    1 NPELEVGQTFPSKEEFKEAVREYAIKNGFEFKVKKSDKKRYRAKCKDKGCPWRVRASKRKRSDTFQI   67 (67)
T ss_pred             CCccccCCEECCHHHHHHHHHHHHHhcCcEEEEeccCCEEEEEEEcCCCCCEEEEEEEcCCCCEEEC
Confidence            4679999999999999999999999999999999999999999999999999999999999999986

The function of these proteins is unknown. More information about these proteins can be found at Protein of the Month: Transposase [].

>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]

Probab=99.55  E-value=1.4e-14  Score=127.08  Aligned_cols=73  Identities=29%  Similarity=0.418  Sum_probs=69.8

Q ss_pred             ceeeccCCCcceeE---EEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHhccccccCCCCcEEEEcCCchHHHHHHH
Q 037723          384 GWEIDSPYKSVMLV---AVFRDANNAILPIAFCEVQEENFDSWSFFLKNLYEGLCMDYMDYGKGICIMCDRDNGVDEAVS  460 (714)
Q Consensus       384 ~T~~~~ky~g~Ll~---avG~D~n~~~~plAfa~v~~E~~esw~WfL~~l~~~l~~~~~~~~~~~~iisD~~~gl~~Ai~  460 (714)
                      |||++|+| |+++.   ++|+|++|+.+|+||+++++|+.++|.|||+.+++.++.     . |.+||||+++|+.+||+
T Consensus         1 ~T~~tn~~-~~l~~~~~~~~~d~~~~~~~v~~~l~~~e~~~~~~~~l~~~~~~~~~-----~-p~~ii~D~~~~~~~Ai~   73 (93)
T PF10551_consen    1 GTYKTNKY-GPLLYLMIAVGIDGNGRGFPVAFALVSSESEESYEWFLEKLKEAMPQ-----K-PKVIISDFDKALINAIK   73 (93)
T ss_pred             Cccccccc-cccceeceEEEEcCCCCEEEEEEEEEcCCChhhhHHHHHHhhhcccc-----C-ceeeeccccHHHHHHHH
Confidence            79999999 99886   999999999999999999999999999999999999874     4 99999999999999999


Q ss_pred             HHH
Q 037723          461 DLY  463 (714)
Q Consensus       461 ~vf  463 (714)
                      ++|
T Consensus        74 ~vf   76 (93)
T PF10551_consen   74 EVF   76 (93)
T ss_pred             HHC
Confidence            999

This domain is also found in a transposase for the insertion sequence element IS256 in transposon Tn4001 [].

>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=99.49  E-value=1.3e-14  Score=159.73  Aligned_cols=164  Identities=16%  Similarity=0.169  Sum_probs=136.6

Q ss_pred             CcEEEeeceeeccCCC-----cceeEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHhccccccCCCCcEEEEcCC
Q 037723          377 RRLVIVDGWEIDSPYK-----SVMLVAVFRDANNAILPIAFCEVQEENFDSWSFFLKNLYEGLCMDYMDYGKGICIMCDR  451 (714)
Q Consensus       377 r~Vi~iD~T~~~~ky~-----g~Ll~avG~D~n~~~~plAfa~v~~E~~esw~WfL~~l~~~l~~~~~~~~~~~~iisD~  451 (714)
                      -++|.+||+|.+.+.+     ..+++|+|+|.+|+..+||+.+.+.|+.++|.-||+.|++..-      ..|..||+|+
T Consensus       162 y~~l~iD~~~~kvr~~~~~~~~~~~v~iGi~~dG~r~vLg~~~~~~Es~~~W~~~l~~L~~RGl------~~~~lvv~Dg  235 (381)
T PF00872_consen  162 YPYLWIDGTYFKVREDGRVVKKAVYVAIGIDEDGRREVLGFWVGDRESAASWREFLQDLKERGL------KDILLVVSDG  235 (381)
T ss_pred             ccceeeeeeecccccccccccchhhhhhhhhcccccceeeeecccCCccCEeeecchhhhhccc------cccceeeccc
Confidence            4789999999998754     4689999999999999999999999999999999999998743      3589999999


Q ss_pred             chHHHHHHHHHH-------------HHHHhhCCC---chhhhHHHHHHhhhhHHHHHHHHHHHhh----cCchhhhHHhc
Q 037723          452 DNGVDEAVSDLY-------------NKLKEQFPL---APVYSLFWAACSRTNKVTFQQHMMLLQD----RNKDCYGWLIN  511 (714)
Q Consensus       452 ~~gl~~Ai~~vf-------------~n~~~~~~~---~~l~~~~~~~~~a~t~~eF~~~~~~l~~----~~~~~~~~L~~  511 (714)
                      ++||..||+.+|             +|+.++.+.   +.+...++.+..+.+.++..+.++.+.+    ..|.+.++|.+
T Consensus       236 ~~gl~~ai~~~fp~a~~QrC~vH~~RNv~~~v~~k~~~~v~~~Lk~I~~a~~~e~a~~~l~~f~~~~~~kyp~~~~~l~~  315 (381)
T PF00872_consen  236 HKGLKEAIREVFPGAKWQRCVVHLMRNVLRKVPKKDRKEVKADLKAIYQAPDKEEAREALEEFAEKWEKKYPKAAKSLEE  315 (381)
T ss_pred             cccccccccccccchhhhhheechhhhhccccccccchhhhhhccccccccccchhhhhhhhcccccccccchhhhhhhh
Confidence            999999999999             666666643   3666677777777777777666666543    57899999998


Q ss_pred             cccccceecccCCCcccccccCChhHHHHHHHhhh
Q 037723          512 REYHCWALYCMPEWAKSTDITISAAEQLRSWLLKY  546 (714)
Q Consensus       512 ~~~~~Wa~a~~~~~~~~g~~TtN~~Es~N~~ik~~  546 (714)
                      ...+.|+..-|+...+--+.|||.+||+|+.||+.
T Consensus       316 ~~~~~~tf~~fP~~~~~~i~TTN~iEsln~~irrr  350 (381)
T PF00872_consen  316 NWDELLTFLDFPPEHRRSIRTTNAIESLNKEIRRR  350 (381)
T ss_pred             ccccccceeeecchhccccchhhhccccccchhhh
Confidence            77788888778877666788999999999999983

Transposases have been grouped into various families [, , ]. The mutator family of transposases consists of a number of elements that include, mutator from maize, IsT2 from Thiobacillus ferrooxidans, Is256 from Staphylococcus aureus, Is1201 from Lactobacillus helveticus, Is1081 from Mycobacterium bovis, IsRm3 from Rhizobium meliloti and others. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=98.87  E-value=6.2e-09  Score=113.06  Aligned_cols=163  Identities=15%  Similarity=0.137  Sum_probs=122.4

Q ss_pred             CCcEEEeeceeeccC--CCcceeEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHhccccccCCCCcEEEEcCCch
Q 037723          376 CRRLVIVDGWEIDSP--YKSVMLVAVFRDANNAILPIAFCEVQEENFDSWSFFLKNLYEGLCMDYMDYGKGICIMCDRDN  453 (714)
Q Consensus       376 ~r~Vi~iD~T~~~~k--y~g~Ll~avG~D~n~~~~plAfa~v~~E~~esw~WfL~~l~~~l~~~~~~~~~~~~iisD~~~  453 (714)
                      ..+++.+||+|++.+  -+.++++|+|++.+|+...+++.+-+.|+ ..|.-||..|+...-      .....+++|.++
T Consensus       144 ~~~~v~~D~~~~k~r~v~~~~~~ia~Gv~~eG~reilg~~~~~~e~-~~w~~~l~~l~~rgl------~~v~l~v~Dg~~  216 (379)
T COG3328         144 DYPYVYLDAKYVKVRSVRNKAVYIAIGVTEEGRREILGIWVGVRES-KFWLSFLLDLKNRGL------SDVLLVVVDGLK  216 (379)
T ss_pred             CceEEEEecceeehhhhhhheeeeeeccCcccchhhhceeeecccc-hhHHHHHHHHHhccc------cceeEEecchhh
Confidence            578999999999998  45679999999999999999999999999 999988888887733      235677889999


Q ss_pred             HHHHHHHHHH-------------HHHHhhCCCc---hhhhHHHHHHhhhhHHH----HHHHHHHHhhcCchhhhHHhccc
Q 037723          454 GVDEAVSDLY-------------NKLKEQFPLA---PVYSLFWAACSRTNKVT----FQQHMMLLQDRNKDCYGWLINRE  513 (714)
Q Consensus       454 gl~~Ai~~vf-------------~n~~~~~~~~---~l~~~~~~~~~a~t~~e----F~~~~~~l~~~~~~~~~~L~~~~  513 (714)
                      ||.+||..+|             +|+..+.+.+   .....+..+..+.+.++    |+...+.+....|...+|+.+.-
T Consensus       217 gl~~aI~~v~p~a~~Q~C~vH~~Rnll~~v~~k~~d~i~~~~~~I~~a~~~e~~~~~~~~~~~~w~~~yP~i~~~~~~~~  296 (379)
T COG3328         217 GLPEAISAVFPQAAVQRCIVHLVRNLLDKVPRKDQDAVLSDLRSIYIAPDAEEALLALLAFSELWGKRYPAILKSWRNAL  296 (379)
T ss_pred             hhHHHHHHhccHhhhhhhhhHHHhhhhhhhhhhhhHHHHhhhhhhhccCCcHHHHHHHHHHHHhhhhhcchHHHHHHHHH
Confidence            9999999999             4444444433   22233333333444443    44444444556788888888876


Q ss_pred             cccceecccCCCcccccccCChhHHHHHHHhh
Q 037723          514 YHCWALYCMPEWAKSTDITISAAEQLRSWLLK  545 (714)
Q Consensus       514 ~~~Wa~a~~~~~~~~g~~TtN~~Es~N~~ik~  545 (714)
                      .+.|...-|+...+--+.|||..|++|+.++.
T Consensus       297 ~~~~~F~~fp~~~r~~i~ttN~IE~~n~~ir~  328 (379)
T COG3328         297 EELLPFFAFPSEIRKIIYTTNAIESLNKLIRR  328 (379)
T ss_pred             HHhcccccCcHHHHhHhhcchHHHHHHHHHHH
Confidence            67777666665544568899999999998875

>smart00575 ZnF_PMZ plant mutator transposase zinc finger

Probab=98.84  E-value=1e-09  Score=73.77  Aligned_cols=27  Identities=48%  Similarity=0.843  Sum_probs=25.1

Q ss_pred             ccccccccccccCcccchhhHHHHhcC
Q 037723          626 SVCSCCLWQLSGIPCSHACQCIIRWAG  652 (714)
Q Consensus       626 ~tCSC~~~q~~GiPC~Haiav~~~~~~  652 (714)
                      ++|||++||..||||+|+|+|+...++
T Consensus         1 ~~CsC~~~~~~gipC~H~i~v~~~~~~   27 (28)
T smart00575        1 KTCSCRKFQLSGIPCRHALAAAIHIGL   27 (28)
T ss_pred             CcccCCCcccCCccHHHHHHHHHHhCC
Confidence            489999999999999999999998875

>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis

Probab=98.54  E-value=4.5e-07  Score=80.13  Aligned_cols=69  Identities=14%  Similarity=0.286  Sum_probs=65.4

Q ss_pred             eCCHHHHHHHHHHHHHHcCeeEEEEeecceEEEEEecc------------------------------------------
Q 037723          189 FKDEFQFRTAVDIQAMRDGIKLCVMENTSTFISCECSD------------------------------------------  226 (714)
Q Consensus       189 F~s~ee~r~ai~~yAi~~~f~ir~~ks~~~r~~~~C~~------------------------------------------  226 (714)
                      |.+++|++..|+.++...|++|.+.+||...+.++|..                                          
T Consensus         1 F~~k~~ikpwlq~~~~~~Gi~iVIerSd~~ki~FkCk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~t~srk   80 (111)
T PF08731_consen    1 FDDKDEIKPWLQKIFYPQGIGIVIERSDKKKIVFKCKNGKRYRHKKKKKGQAQAQQKESTSGNKNKSSKKKKKKRTKSRK   80 (111)
T ss_pred             CCchHHHHHHHHHHhhhcCceEEEEecCCceEEEEEecCCCcccccccccccccccccccccccccccccccCCcccccc
Confidence            78999999999999999999999999999999999984                                          


Q ss_pred             CCCceEEEEEEecCCCeEEEeeeCCCCcccC
Q 037723          227 LMCDWKVSAAKVRKSNVFVLKEITPNYTCKR  257 (714)
Q Consensus       227 ~gCpWri~as~~~~~~~~~V~~~~~~HnC~~  257 (714)
                      ..|||+|+|......+.|.|+.+++.|+|++
T Consensus        81 ~~CPFriRA~yS~k~k~W~lvvvnn~HnH~l  111 (111)
T PF08731_consen   81 NTCPFRIRANYSKKNKKWTLVVVNNEHNHPL  111 (111)
T ss_pred             cCCCeEEEEEEEecCCeEEEEEecCCcCCCC
Confidence            1699999999999999999999999999985

This entry includes the paralogous pair of transcription factors AFT1 and AFT2.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=98.37  E-value=8.7e-07  Score=77.33  Aligned_cols=61  Identities=10%  Similarity=0.154  Sum_probs=54.0

Q ss_pred             HHHHHHHHHcCeeEEEEeecce-------EEEEEecc----------------------CCCceEEEEEEecCCCeEEEe
Q 037723          197 TAVDIQAMRDGIKLCVMENTST-------FISCECSD----------------------LMCDWKVSAAKVRKSNVFVLK  247 (714)
Q Consensus       197 ~ai~~yAi~~~f~ir~~ks~~~-------r~~~~C~~----------------------~gCpWri~as~~~~~~~~~V~  247 (714)
                      ++|..||...||.++..++.+.       ++.++|+.                      .||||+|.+.+.. .+.|.|.
T Consensus         1 ~fy~~yA~~~GF~vr~~~s~~~~~~~~~~~~~~~C~r~G~~~~~~~~~~~~~r~~~s~ktgC~a~i~v~~~~-~~~w~v~   79 (91)
T PF03101_consen    1 DFYNSYARRHGFSVRKSSSRKSKKNGEIKRVTFVCSRGGKYKSKKKNEEKRRRNRPSKKTGCKARINVKRRK-DGKWRVT   79 (91)
T ss_pred             CHHHHhcCcCCeEEEEeeeEeCCCCceEEEEEEEECCcccccccccccccccccccccccCCCEEEEEEEcc-CCEEEEE
Confidence            4789999999999999876654       78899997                      3899999999877 9999999


Q ss_pred             eeCCCCcccCc
Q 037723          248 EITPNYTCKRR  258 (714)
Q Consensus       248 ~~~~~HnC~~~  258 (714)
                      .+..+|||++.
T Consensus        80 ~~~~~HNH~L~   90 (91)
T PF03101_consen   80 SFVLEHNHPLC   90 (91)
T ss_pred             ECcCCcCCCCC
Confidence            99999999975

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.07  E-value=2.1e-06  Score=62.95  Aligned_cols=30  Identities=33%  Similarity=0.723  Sum_probs=27.4

Q ss_pred             EecCCccccccccccccCcccchhhHHHHh
Q 037723          621 VNKELSVCSCCLWQLSGIPCSHACQCIIRW  650 (714)
Q Consensus       621 V~l~~~tCSC~~~q~~GiPC~Haiav~~~~  650 (714)
                      +++...+|||..|+..|.||+|++|++...
T Consensus        10 ~~~~~~~CsC~~~~~~~~~CkHi~av~~~~   39 (40)
T PF04434_consen   10 VSIEQASCSCPYFQFRGGPCKHIVAVLLAL   39 (40)
T ss_pred             ccccccEeeCCCccccCCcchhHHHHHHhh
Confidence            667789999999999999999999999764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the SWIM (SWI2/SNF2 and MuDR) zinc-binding domain, which is found in a variety of prokaryotic and eukaryotic proteins, such as mitogen-activated protein kinase kinase kinase 1 (or MEKK1). It is also found in the related protein MEX (MEKK1-related protein X), a testis-expressed protein that acts as an E3 ubiquitin ligase through the action of E2 ubiquitin-conjugating enzymes in the proteasome degradation pathway; the SWIM domain is critical for MEX ubiquitination []. SWIM domains are also found in the homologous recombination protein Sws1 [], as well as in several hypothetical proteins. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding

>cd06410 PB1_UP2 Uncharacterized protein 2

Probab=97.47  E-value=5.9e-05  Score=66.41  Aligned_cols=61  Identities=7%  Similarity=0.009  Sum_probs=53.3

Q ss_pred             cCCCCchhhhHhhccchHHHHHHHhhhccccCCCceEEEeeccccccc-cccCCcCCCccchHHH
Q 037723           29 KTSPRNCFQMAIGQQMRDVLILSMAVDSKNASEQSTRVHISDTEVIDA-LKDVDESDNVGHSLVN   92 (714)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   92 (714)
                      .+|.|.+.  +|.++||+.||++|+++.++++.+ ++++|+.|+..-+ |.++.+|+++.+|+.+
T Consensus        20 ~GG~tr~i--~V~r~~s~~el~~kl~~~~~~~~~-~~lky~Lp~edld~Lisv~~DeDl~~M~~e   81 (97)
T cd06410          20 VGGETRIV--SVDRSISFKELVSKLSELFGAGVV-VTLKYQLPDEDLDALISVSNDEDLKNMMEE   81 (97)
T ss_pred             cCCceEEE--EEcCCCCHHHHHHHHHHHhCCCCc-eEEEEEcCCCCcceeEEecCcHHHHHHHHh
Confidence            46667766  999999999999999999999988 9999999887755 9999999999888755

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=91.84  E-value=0.35  Score=38.78  Aligned_cols=40  Identities=10%  Similarity=0.060  Sum_probs=32.9

Q ss_pred             ceEEEEEeccCCCceEEEEEEecCCCeEEEeeeCCCCccc
Q 037723          217 STFISCECSDLMCDWKVSAAKVRKSNVFVLKEITPNYTCK  256 (714)
Q Consensus       217 ~~r~~~~C~~~gCpWri~as~~~~~~~~~V~~~~~~HnC~  256 (714)
                      -.|--++|+..+||++-.+.+..++....+.++..+|||+
T Consensus        20 ~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen   20 YPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             CEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             eeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            3567799999999999999988878888899999999997

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>PF13610 DDE_Tnp_IS240: DDE domain

Probab=91.39  E-value=0.067  Score=50.59  Aligned_cols=78  Identities=19%  Similarity=0.085  Sum_probs=65.1

Q ss_pred             CcEEEeeceeeccCCCcceeEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHhccccccCCCCcEEEEcCCchHHH
Q 037723          377 RRLVIVDGWEIDSPYKSVMLVAVFRDANNAILPIAFCEVQEENFDSWSFFLKNLYEGLCMDYMDYGKGICIMCDRDNGVD  456 (714)
Q Consensus       377 r~Vi~iD~T~~~~ky~g~Ll~avG~D~n~~~~plAfa~v~~E~~esw~WfL~~l~~~l~~~~~~~~~~~~iisD~~~gl~  456 (714)
                      ++.+.+|-||.+.+-+ ..+..-.+|.+++  .|++-|.+.-+...=..||..+.+...      ..|..|+||+.++..
T Consensus         1 ~~~w~~DEt~iki~G~-~~yl~~aiD~~~~--~l~~~ls~~Rd~~aA~~Fl~~~l~~~~------~~p~~ivtDk~~aY~   71 (140)
T PF13610_consen    1 GDSWHVDETYIKIKGK-WHYLWRAIDAEGN--ILDFYLSKRRDTAAAKRFLKRALKRHR------GEPRVIVTDKLPAYP   71 (140)
T ss_pred             CCEEEEeeEEEEECCE-EEEEEEeeccccc--chhhhhhhhcccccceeeccccceeec------cccceeecccCCccc
Confidence            3678999999987654 3445778899999  899999999999999999988887764      369999999999999


Q ss_pred             HHHHHHH
Q 037723          457 EAVSDLY  463 (714)
Q Consensus       457 ~Ai~~vf  463 (714)
                      .|++++.
T Consensus        72 ~A~~~l~   78 (140)
T PF13610_consen   72 AAIKELN   78 (140)
T ss_pred             hhhhhcc
Confidence            9997665

>PF04684 BAF1_ABF1: BAF1 / ABF1 chromatin reorganising factor; InterPro: IPR006774 ABF1 is a sequence-specific DNA binding protein involved in transcription activation, gene silencing and initiation of DNA replication

Probab=91.24  E-value=0.35  Score=53.29  Aligned_cols=57  Identities=9%  Similarity=0.158  Sum_probs=51.1

Q ss_pred             cccCceeCCHHHHHHHHHHHHHHcCeeEEEEeecc-eEEEEEeccCCCceEEEEEEec
Q 037723          183 IKLGHKFKDEFQFRTAVDIQAMRDGIKLCVMENTS-TFISCECSDLMCDWKVSAAKVR  239 (714)
Q Consensus       183 ~~vG~~F~s~ee~r~ai~~yAi~~~f~ir~~ks~~-~r~~~~C~~~gCpWri~as~~~  239 (714)
                      -..+..|++.++-..+|..|....+..|..+.|-+ +.+++.|.-..|||+|.++..+
T Consensus        22 ~~~~~~f~tl~~wy~v~ndyefq~rcpiilknsh~nkhftfachlk~c~fkillsy~g   79 (496)
T PF04684_consen   22 SAQARKFPTLEAWYNVINDYEFQSRCPIILKNSHRNKHFTFACHLKNCPFKILLSYCG   79 (496)
T ss_pred             cccccCCCcHHHHHHHHhhhhhhhcCceeecccccccceEEEeeccCCCceeeeeecc
Confidence            44578899999999999999999999999988864 6899999999999999998654

ABF1 is known to remodel chromatin, and it is proposed that it mediates its effects on transcription and gene expression by modifying local chromatin architecture []. These functions require a conserved stretch of 20 amino acids in the C-terminal region of ABF1 (amino acids 639 to 662 Saccharomyces cerevisiae (P14164 from SWISSPROT)) []. The N-terminal two thirds of the protein are necessary for DNA binding, and the N terminus (amino acids 9 to 91 in S. cerevisiae) is thought to contain a novel zinc-finger motif which may stabilise the protein structure [].; GO: 0003677 DNA binding, 0006338 chromatin remodeling, 0005634 nucleus

>smart00666 PB1 PB1 domain

Probab=88.22  E-value=0.28  Score=41.51  Aligned_cols=35  Identities=11%  Similarity=0.092  Sum_probs=31.2

Q ss_pred             hhHhhccchHHHHHHHhhhccccCCCceEEEeecc
Q 037723           37 QMAIGQQMRDVLILSMAVDSKNASEQSTRVHISDT   71 (714)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (714)
                      .+.+..++||.++++|+..++++..++++++|.++
T Consensus        14 ~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~De   48 (81)
T smart00666       14 RLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDE   48 (81)
T ss_pred             EEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECC
Confidence            34677899999999999999999999999999964

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=81.69  E-value=2.6  Score=33.14  Aligned_cols=46  Identities=11%  Similarity=0.091  Sum_probs=24.7

Q ss_pred             cCeeEEEEeecceEEEEEeccC---CCceEEEEEEecCCCeEEEeeeCCCCcc
Q 037723          206 DGIKLCVMENTSTFISCECSDL---MCDWKVSAAKVRKSNVFVLKEITPNYTC  255 (714)
Q Consensus       206 ~~f~ir~~ks~~~r~~~~C~~~---gCpWri~as~~~~~~~~~V~~~~~~HnC  255 (714)
                      .|+.|...+.........|...   +|+++|...  .+.  ..|.....+|||
T Consensus        14 ~Gy~y~~~~~~~~~~~WrC~~~~~~~C~a~~~~~--~~~--~~~~~~~~~HnH   62 (62)
T PF04500_consen   14 DGYRYYFNKRNDGKTYWRCSRRRSHGCRARLITD--AGD--GRVVRTNGEHNH   62 (62)
T ss_dssp             TTEEEEEEEE-SS-EEEEEGGGTTS----EEEEE----T--TEEEE-S---SS
T ss_pred             CCeEEECcCCCCCcEEEEeCCCCCCCCeEEEEEE--CCC--CEEEECCCccCC
Confidence            4777777777788889999975   899999987  222  334455578887

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>smart00774 WRKY DNA binding domain

Probab=81.55  E-value=2.1  Score=34.18  Aligned_cols=38  Identities=13%  Similarity=0.037  Sum_probs=31.6

Q ss_pred             eEEEEEecc-CCCceEEEEEEecCCCeEEEeeeCCCCcc
Q 037723          218 TFISCECSD-LMCDWKVSAAKVRKSNVFVLKEITPNYTC  255 (714)
Q Consensus       218 ~r~~~~C~~-~gCpWri~as~~~~~~~~~V~~~~~~HnC  255 (714)
                      .|--++|+. .|||++=.+.+..++....+.++..+|||
T Consensus        21 pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774       21 PRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             cceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            456789998 89999888887766667778899999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=81.08  E-value=0.54  Score=39.80  Aligned_cols=41  Identities=2%  Similarity=0.052  Sum_probs=35.8

Q ss_pred             hhhhHhhccchHHHHHHHhhhccccCCCceEEEeecccccc
Q 037723           35 CFQMAIGQQMRDVLILSMAVDSKNASEQSTRVHISDTEVID   75 (714)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (714)
                      ++-|-|..+++|++...|++++|.+..+.+++.|.++..-+
T Consensus        12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~s~~   52 (80)
T cd06406          12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEASGE   52 (80)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCCCCC
Confidence            56677899999999999999999999999999999765444

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known

Probab=81.00  E-value=16  Score=32.57  Aligned_cols=76  Identities=16%  Similarity=-0.018  Sum_probs=55.3

Q ss_pred             CCcEEEeeceeecc-CCCcceeEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHhccccccCCCCcEEEEcCCchH
Q 037723          376 CRRLVIVDGWEIDS-PYKSVMLVAVFRDANNAILPIAFCEVQEENFDSWSFFLKNLYEGLCMDYMDYGKGICIMCDRDNG  454 (714)
Q Consensus       376 ~r~Vi~iD~T~~~~-ky~g~Ll~avG~D~n~~~~plAfa~v~~E~~esw~WfL~~l~~~l~~~~~~~~~~~~iisD~~~g  454 (714)
                      ...++.+|.++... ..++..+..+.+|..-.. .+++.+-..++.+.+.-+|.......+.     ..|.+|+||+.++
T Consensus         5 p~~~~~~D~~~~~~~~~~~~~~~~~~iD~~S~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~p~~i~tD~g~~   78 (120)
T PF00665_consen    5 PGERWQIDFTPMPIPDKGGRVYLLVFIDDYSRF-IYAFPVSSKETAEAALRALKRAIEKRGG-----RPPRVIRTDNGSE   78 (120)
T ss_dssp             TTTEEEEEEEEETGGCTT-CEEEEEEEETTTTE-EEEEEESSSSHHHHHHHHHHHHHHHHS------SE-SEEEEESCHH
T ss_pred             CCCEEEEeeEEEecCCCCccEEEEEEEECCCCc-EEEEEeeccccccccccccccccccccc-----ccceecccccccc
Confidence            45689999997763 455688888999977654 5678888887888888888766666542     1289999999998


Q ss_pred             HHH
Q 037723          455 VDE  457 (714)
Q Consensus       455 l~~  457 (714)
                      ...
T Consensus        79 f~~   81 (120)
T PF00665_consen   79 FTS   81 (120)
T ss_dssp             HHS
T ss_pred             ccc
Confidence            764

However, the manner in which the N-terminal, catalytic, and C-terminal domains interact in the holoenzyme remains obscure. Numerous studies indicate that the enzyme functions as a multimer, minimally a dimer. The integrase proteins from Human immunodeficiency virus 1 (HIV-1) and Avian sarcoma virus (ASV) have been studied most carefully with respect to the structural basis of catalysis. Although the active site of ASV integrase does not undergo significant conformational changes on binding the required metal cofactor, that of HIV-1 does. This active site-mediated conformational change in HIV-1 reorganises the catalytic core and C-terminal domains and appears to promote an interaction that is favourable for catalysis []. Retroviral integrase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The presence of retrovirus integrase-related gene sequences in eukaryotes is known. Bacterial transposases involved in the transposition of the insertion sequence also belong to this group. HIV integrase catalyses the incorporation of virally derived DNA into the human genome. This unique step in the virus life cycle provides a variety of points for intervention and hence is an attractive target for the development of new therapeutics for the treatment of AIDS []. Substrate recognition by the retroviral integrase enzyme is critical for retroviral integration. To catalyse this recombination event, integrase must recognise and act on two types of substrates, viral DNA and host DNA, yet the necessary interactions exhibit markedly different degrees of specificity [].; GO: 0015074 DNA integration; PDB: 3AO3_A 3OVN_A 3AO5_A 3AO4_A 3AO1_A 1C6V_D 3HPG_A 3HPH_A 3OYD_A 3OYF_B ....

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=80.75  E-value=0.66  Score=39.89  Aligned_cols=50  Identities=14%  Similarity=0.124  Sum_probs=39.3

Q ss_pred             chhhhHhhccchHHHHHHHhhhccccCCCceEEEeeccccccccccCCcCC
Q 037723           34 NCFQMAIGQQMRDVLILSMAVDSKNASEQSTRVHISDTEVIDALKDVDESD   84 (714)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (714)
                      .+..|.|+-.++|++|..|+.+++++. +.+++-|-|+-++=.+-+.+|++
T Consensus        12 Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDEGD~iti~sq~DLd   61 (86)
T cd06408          12 DTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDDGDMITMGDQDDLD   61 (86)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcCCCCccccCHHHHH
Confidence            456678999999999999999999996 78999998775444555555443

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	714
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 6e-07
 Identities = 66/433 (15%), Positives = 122/433 (28%), Gaps = 118/433 (27%)

Query: 23  CLS-GRQKTSPRNCFQMAIGQQMRDVLILSM--------AVDSKNASEQSTRVHISDTEV 73
           CLS   Q       F + +        +L M          +  + S+ S+ + +    +
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 74  IDALKDVDESDNVGHSLVNILDSAISLLAKDVLAEEPPSPFFNLQCDIDELSNDGSLFLS 133
              L+ + +S    + L+ +L         +V   +  +  FNL C I   +    +   
Sbjct: 231 QAELRRLLKSKPYENCLL-VLL--------NVQNAKAWNA-FNLSCKILLTTRFKQVTDF 280

Query: 134 DSTDNDGSV-LENSWEGYEDD----LFQNVFDKKDER-------------SCIAGFVFEK 175
            S      + L++       D    L     D + +              S IA  + + 
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340

Query: 176 GGTS-----------GIIIKLG----------HKFKDEFQFRTAVDIQAMRDGIKLCVM- 213
             T              II+              F     F  +  I  +     L ++ 
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL----LSLIW 396

Query: 214 ----ENTSTFISCEC---SDLMCDWKVSA---------AKVRKSNVFVL-KEITPNYTCK 256
               ++    +  +    S +    K S           KV+  N + L + I  +Y   
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP 456

Query: 257 RRTYKFPLGRKWN---AAKFL--HLWVQNPNIDFHRLRYEIETYSGFKYPTWKLEA-IDK 310
           +      L   +        +  HL            R     +  F++    LE  I  
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR---MVFLDFRF----LEQKIRH 509

Query: 311 TAKLW------------LRTYHNY------GYERL------FQYKNEMLTVNSNNIVIIQ 346
            +  W            L+ Y  Y       YERL      F  K E   + S    +++
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569

Query: 347 KKTFDDPDLAVFD 359
                  D A+F+
Sbjct: 570 -IALMAEDEAIFE 581

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 2e-06
 Identities = 66/452 (14%), Positives = 129/452 (28%), Gaps = 139/452 (30%)

Query: 187 HKFKD---EFQ--FRTAVDIQAMRDGIKLCVMENTSTFISCECSDLMCD----------- 230
           +++KD    F+  F    D + ++D  K       S     E   ++             
Sbjct: 16  YQYKDILSVFEDAFVDNFDCKDVQDMPK-------SILSKEEIDHIIMSKDAVSGTLRLF 68

Query: 231 WKVSAAKVRKSNVFVLKEITPNY--------------TCKRRTYKFPLGRKWNA----AK 272
           W + + +      FV + +  NY              +   R Y     R +N     AK
Sbjct: 69  WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128

Query: 273 F----------LHLWVQ----NPNIDFH-------------RLR-YEIETYSGFK-YPTW 303
           +          L   +       N+                    Y+++    FK +  W
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF--W 186

Query: 304 --------KLEAIDKTAKLWLRTYHNYGYERLFQYKNEMLTVNSNNIV---IIQKKTFDD 352
                       ++   KL  +   N+   R     N  L ++S       +++ K +++
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNW-TSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 353 PDLAVFDRMFVLFADCSHAFKITCRRLVIVDGWEIDSPYKSVMLVAVFRDANNAILPIAF 412
             L V     V  A   +AF ++C+ L+        + +K V          + +     
Sbjct: 246 -CLLVLLN--VQNAKAWNAFNLSCKILLT-------TRFKQVT---------DFLSAATT 286

Query: 413 CEVQEENFDSWSFFLKNLYEGLCMDYMDYGKGICIMCDRDNGVDEAVSDLYNKLKEQFPL 472
             +  ++          L         D  K + +       +D    DL  ++    P 
Sbjct: 287 THISLDHHS------MTLTP-------DEVKSLLLKY-----LDCRPQDLPREVLTTNPR 328

Query: 473 APVYSLFWAACSRTNKVTFQQHMMLLQDR----NKDCYGWL---INREYHCWALYCMPEW 525
               S+   +  R    T+     +  D+     +     L     R+     L   P  
Sbjct: 329 R--LSIIAESI-RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF-DRLSVFPP- 383

Query: 526 AKSTDITISAAEQLRSW--LLKYLDMNVANRF 555
             S  I       +  W  ++K   M V N+ 
Sbjct: 384 --SAHIPTILLSLI--WFDVIKSDVMVVVNKL 411

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	714
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	89.58
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	89.57

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=89.58  E-value=0.63  Score=37.85  Aligned_cols=40  Identities=10%  Similarity=0.101  Sum_probs=35.0

Q ss_pred             EEEEEeccCCCceEEEEEEecCCCeEEEeeeCCCCcccCc
Q 037723          219 FISCECSDLMCDWKVSAAKVRKSNVFVLKEITPNYTCKRR  258 (714)
Q Consensus       219 r~~~~C~~~gCpWri~as~~~~~~~~~V~~~~~~HnC~~~  258 (714)
                      |--++|+..|||++-.+.+..++....+.++...|||+..
T Consensus        35 RsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p   74 (76)
T 2ayd_A           35 RSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP   74 (76)
T ss_dssp             EEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCC
T ss_pred             eeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCC
Confidence            5668999999999999998777777888999999999864

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=89.57  E-value=0.66  Score=37.92  Aligned_cols=40  Identities=8%  Similarity=0.059  Sum_probs=34.6

Q ss_pred             EEEEEeccCCCceEEEEEEecCCCeEEEeeeCCCCcccCc
Q 037723          219 FISCECSDLMCDWKVSAAKVRKSNVFVLKEITPNYTCKRR  258 (714)
Q Consensus       219 r~~~~C~~~gCpWri~as~~~~~~~~~V~~~~~~HnC~~~  258 (714)
                      |--++|+..|||++-.+.+...+....+.++...|||+..
T Consensus        38 RsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p   77 (78)
T 1wj2_A           38 RSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   77 (78)
T ss_dssp             EEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             eEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence            5568999999999999998877777778899999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	714
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	92.71

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.71  E-value=0.1  Score=39.90  Aligned_cols=40  Identities=8%  Similarity=0.059  Sum_probs=35.1

Q ss_pred             EEEEEeccCCCceEEEEEEecCCCeEEEeeeCCCCcccCc
Q 037723          219 FISCECSDLMCDWKVSAAKVRKSNVFVLKEITPNYTCKRR  258 (714)
Q Consensus       219 r~~~~C~~~gCpWri~as~~~~~~~~~V~~~~~~HnC~~~  258 (714)
                      |--++|+..||+++=.+.+..++....+.++..+|||+..
T Consensus        31 RsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~P   70 (71)
T d1wj2a_          31 RSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   70 (71)
T ss_dssp             EEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             eEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCC
Confidence            6678999999999999998887777888899999999763