Citrus Sinensis ID: 037730

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80---
Protein Sequence
MSAKGKAWMVAASVGAVEALKDQGFVRRNYSLRFLKQRAETNLRSMVQANKLSLSSAMALSKVRDDKMNESVESLRKVMYSSC
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHccccccccHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHEEEEcc
Coil and Loop (DISEMBL)
MSAKGKAWMVAASVGAVEALKDQGFVRRNYSLRFLKQRAETNLRSMVQANKLSLSSAMALSKVRDDKMNESVESLRKVMYSSC
Flexible Loop (DISEMBL)
MSAKGKAWMVAASVGavealkdqgfvRRNYSLRFLKQRAETNLRSMVQANKLSLSSAMalskvrddkmneSVESLrkvmyssc
Low Complexity Region (SEG)
MSAKGKAWMVAASVGAVEALKDQGFVRRNYSLRFLKQRAETNLRSMVQANKlslssamalsKVRDDKMNESVESLRKVMYSSC
Disordered region (IsUnstruct)
******AWMVAASVGAVEALKDQGFVRRNYSLRFLKQ**********************************************
Disordered Region (DISOPRED)
******A*MVAASVGAVEALKDQGFVRRNYSLRFLK****************************************KVMYSSC
Disordered Region (DISEMBL)
MSAKGKAWMVAASVGAVEALKDQGFVRRNYSLRFLKQRAETNLRSMVQANKLSLSSAMALSKVRDDKMNESVESLRKVMYSSC
Disordered Region (DISPRO)
*****KAWMVAASVGAVEALKDQGFVRRNYSLRFLKQRAETNLRSMV*************************ESLRKVMYSSC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSAKGKAWMVAASVGAVEALKDQGFVRRNYSLRFLKQRAETNLRSMVQANKLSLSSAMALSKVRDDKMNESVESLRKVMYSSC
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	83
225447649	88	PREDICTED: uncharacterized protein LOC10	1.0	0.943	0.690	1e-19
225447653	88	PREDICTED: uncharacterized protein LOC10	1.0	0.943	0.678	5e-19
225447651	88	PREDICTED: uncharacterized protein LOC10	1.0	0.943	0.678	5e-19
225447667	88	PREDICTED: uncharacterized protein LOC10	1.0	0.943	0.678	1e-18
225447663	88	PREDICTED: uncharacterized protein LOC10	1.0	0.943	0.678	2e-18
225447665	87	PREDICTED: uncharacterized protein LOC10	1.0	0.954	0.650	3e-18
225447657	88	PREDICTED: uncharacterized protein LOC10	1.0	0.943	0.666	3e-17
225447661	88	PREDICTED: uncharacterized protein LOC10	1.0	0.943	0.654	5e-17
225447659	88	PREDICTED: uncharacterized protein LOC10	1.0	0.943	0.654	1e-16
449438062	85	PREDICTED: uncharacterized protein LOC10	0.963	0.941	0.578	3e-16

>gi|225447649|ref|XP_002274919.1| PREDICTED: uncharacterized protein LOC100261290 [Vitis vinifera]

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/84 (69%), Positives = 65/84 (77%), Gaps = 1/84 (1%)

Query: 1  MSAKGKAWMVAASVGAVEALKDQGFVRRNYSLRFLKQRAETNLRSMVQANKL-SLSSAMA 59
          MS  GKAW+VAASVGAVEALKDQGF R NY+LR + Q A+TNLRS  QA KL S SSAM 
Sbjct: 1  MSHMGKAWIVAASVGAVEALKDQGFCRWNYTLRSIHQHAKTNLRSFTQAKKLSSSSSAMV 60

Query: 60 LSKVRDDKMNESVESLRKVMYSSC 83
           S+VRD+K  +S ESLR VMY SC
Sbjct: 61 SSRVRDEKAKQSEESLRTVMYLSC 84

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447653|ref|XP_002275082.1| PREDICTED: uncharacterized protein LOC100251039 [Vitis vinifera] gi|225447655|ref|XP_002275274.1| PREDICTED: uncharacterized protein LOC100245897 [Vitis vinifera]

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 57/84 (67%), Positives = 65/84 (77%), Gaps = 1/84 (1%)

Query: 1  MSAKGKAWMVAASVGAVEALKDQGFVRRNYSLRFLKQRAETNLRSMVQANKL-SLSSAMA 59
          MS  GKAW+VAASVGAVEALKDQGF R NY+LR + Q A+TNLRS  QA KL S SSAM 
Sbjct: 1  MSHMGKAWLVAASVGAVEALKDQGFCRWNYTLRSIHQHAKTNLRSFAQAKKLSSSSSAMV 60

Query: 60 LSKVRDDKMNESVESLRKVMYSSC 83
           S+VR++K  +S ESLR VMY SC
Sbjct: 61 SSRVREEKAKQSEESLRTVMYLSC 84

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447651|ref|XP_002274988.1| PREDICTED: uncharacterized protein LOC100256196 [Vitis vinifera]

 Score = 98.2 bits (243), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 57/84 (67%), Positives = 65/84 (77%), Gaps = 1/84 (1%)

Query: 1  MSAKGKAWMVAASVGAVEALKDQGFVRRNYSLRFLKQRAETNLRSMVQANKL-SLSSAMA 59
          MS  GKAW+VAASVGAVEALKDQGF R NY+LR + Q A+TNLRS  QA KL S SSAM 
Sbjct: 1  MSHVGKAWLVAASVGAVEALKDQGFCRWNYTLRSIHQHAKTNLRSFAQAKKLSSSSSAMV 60

Query: 60 LSKVRDDKMNESVESLRKVMYSSC 83
           S+VR++K  +S ESLR VMY SC
Sbjct: 61 SSRVREEKAKQSEESLRTVMYLSC 84

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447667|ref|XP_002275551.1| PREDICTED: uncharacterized protein LOC100242538 [Vitis vinifera]

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/84 (67%), Positives = 65/84 (77%), Gaps = 1/84 (1%)

Query: 1  MSAKGKAWMVAASVGAVEALKDQGFVRRNYSLRFLKQRAETNLRSMVQANKL-SLSSAMA 59
          MS  GKAWMVAASVGAVEALKDQGF R NY++R + Q A+TNLRS  +A KL S SSAM 
Sbjct: 1  MSHMGKAWMVAASVGAVEALKDQGFCRWNYTMRSIHQHAKTNLRSFSRAKKLSSSSSAMV 60

Query: 60 LSKVRDDKMNESVESLRKVMYSSC 83
           S+VRD+K  +S ESLR VMY SC
Sbjct: 61 SSRVRDEKAKQSEESLRTVMYLSC 84

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447663|ref|XP_002275464.1| PREDICTED: uncharacterized protein LOC100252779 [Vitis vinifera]

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/84 (67%), Positives = 64/84 (76%), Gaps = 1/84 (1%)

Query: 1  MSAKGKAWMVAASVGAVEALKDQGFVRRNYSLRFLKQRAETNLRSMVQANKL-SLSSAMA 59
          MS  GKAW+VAASVGAVEALKDQGF R NY+LR + Q A+ NLRS  QA KL S SSAM 
Sbjct: 1  MSHMGKAWIVAASVGAVEALKDQGFCRWNYTLRSIHQHAKNNLRSFSQAKKLSSSSSAMV 60

Query: 60 LSKVRDDKMNESVESLRKVMYSSC 83
           S+VRD+K  +S ESLR VMY SC
Sbjct: 61 SSRVRDEKAKQSEESLRTVMYLSC 84

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447665|ref|XP_002275507.1| PREDICTED: uncharacterized protein LOC100247673 [Vitis vinifera]

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 54/83 (65%), Positives = 62/83 (74%)

Query: 1  MSAKGKAWMVAASVGAVEALKDQGFVRRNYSLRFLKQRAETNLRSMVQANKLSLSSAMAL 60
          MS  GKAW+VAASVGAVEALKDQGF R NY++R + Q A  +LRS  Q  KLS SSAM  
Sbjct: 1  MSHMGKAWIVAASVGAVEALKDQGFCRWNYTMRSIHQHARNSLRSFSQVKKLSSSSAMVS 60

Query: 61 SKVRDDKMNESVESLRKVMYSSC 83
          S+VRD+K  +S ESLR VMY SC
Sbjct: 61 SRVRDEKAKQSEESLRTVMYLSC 83

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447657|ref|XP_002275343.1| PREDICTED: uncharacterized protein LOC100240803 [Vitis vinifera]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/84 (66%), Positives = 64/84 (76%), Gaps = 1/84 (1%)

Query: 1  MSAKGKAWMVAASVGAVEALKDQGFVRRNYSLRFLKQRAETNLRSMVQANKL-SLSSAMA 59
          MS  GKAW+VA S+GAVEALKDQGF R NY++R L Q A+ NLRS  QA KL S SSAMA
Sbjct: 1  MSHMGKAWIVATSMGAVEALKDQGFCRWNYTMRSLHQHAKNNLRSFSQAKKLSSSSSAMA 60

Query: 60 LSKVRDDKMNESVESLRKVMYSSC 83
           S+VR+DK  +S ESLR VMY SC
Sbjct: 61 SSRVREDKAKKSEESLRAVMYLSC 84

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447661|ref|XP_002275421.1| PREDICTED: uncharacterized protein LOC100257932 [Vitis vinifera]

 Score = 91.7 bits (226), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/84 (65%), Positives = 63/84 (75%), Gaps = 1/84 (1%)

Query: 1  MSAKGKAWMVAASVGAVEALKDQGFVRRNYSLRFLKQRAETNLRSMVQANKL-SLSSAMA 59
          MS   KAW+VAASVGAVEALKDQGF R NY++R + Q A+ NLRS  QA KL S SSAM 
Sbjct: 1  MSHMRKAWIVAASVGAVEALKDQGFCRWNYTMRSIHQHAKNNLRSFSQAKKLSSSSSAMV 60

Query: 60 LSKVRDDKMNESVESLRKVMYSSC 83
           S+VRD+K  +S ESLR VMY SC
Sbjct: 61 SSRVRDEKAKQSEESLRTVMYLSC 84

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447659|ref|XP_002275321.1| PREDICTED: uncharacterized protein LOC100263064 [Vitis vinifera]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/84 (65%), Positives = 63/84 (75%), Gaps = 1/84 (1%)

Query: 1  MSAKGKAWMVAASVGAVEALKDQGFVRRNYSLRFLKQRAETNLRSMVQANKL-SLSSAMA 59
          MS   KAW+VAASVGAVEALKDQGF R NY+LR + Q A+ NLRS  QA KL S SSAM 
Sbjct: 1  MSHMRKAWVVAASVGAVEALKDQGFCRWNYTLRSIHQHAKNNLRSFSQARKLSSSSSAMV 60

Query: 60 LSKVRDDKMNESVESLRKVMYSSC 83
           S++RD+K  +S ESLR VMY SC
Sbjct: 61 SSRMRDEKAKQSEESLRTVMYLSC 84

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438062|ref|XP_004136809.1| PREDICTED: uncharacterized protein LOC101202743 [Cucumis sativus] gi|449493098|ref|XP_004159192.1| PREDICTED: uncharacterized LOC101202743 [Cucumis sativus]

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/83 (57%), Positives = 59/83 (71%), Gaps = 3/83 (3%)

Query: 1  MSAKGKAWMVAASVGAVEALKDQGFVRRNYSLRFLKQRAETNLRSMVQANKLSLSSAMAL 60
          MS   K W+VAASVG VEALKDQG  R N+++R L+Q A+ ++RS+ QA KLS  SA A+
Sbjct: 1  MSCCRKGWVVAASVGVVEALKDQGICRWNHTIRSLQQYAKNHVRSISQAKKLSSPSAAAV 60

Query: 61 SKVRDDKMNESVESLRKVMYSSC 83
          S   D K N+S ESLR VMY SC
Sbjct: 61 S---DHKWNQSEESLRTVMYLSC 80

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	83
TAIR|locus:1005716386	83	AT4G10265 "AT4G10265" [Arabido	0.939	0.939	0.488	1.2e-12
TAIR|locus:2122799	90	AT4G10270 "AT4G10270" [Arabido	1.0	0.922	0.441	3.9e-12
TAIR|locus:2134188	95	AT4G33560 "AT4G33560" [Arabido	0.987	0.863	0.305	9e-06

TAIR|locus:1005716386 AT4G10265 "AT4G10265" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 41/84 (48%), Positives = 48/84 (57%)

Query:     1 MSAKGKAWMVAASVGAVEALKDQ-GFVRRNYSLRFLKQRAETNLRSMVQANKXXXXXXXX 59
             MS+  K WMVAAS+GAVEALKDQ G  R NY +R   Q    NLRS+ QA K        
Sbjct:     1 MSSASKTWMVAASIGAVEALKDQLGVCRWNYVIRSANQYLRNNLRSVSQAKKLSSSSIDY 60

Query:    60 XXKVRDDKMNESVESLRKVMYSSC 83
               K +     ++ ESLR VMY SC
Sbjct:    61 TNKTK-----QAEESLRTVMYLSC 79

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009611 "response to wounding" evidence=ISS

TAIR|locus:2122799 AT4G10270 "AT4G10270" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 38/86 (44%), Positives = 47/86 (54%)

Query:     1 MSAKGKAWMVAASVGAVEALKDQ-GFVRRNYSLRFLKQRAETNLRSMVQANKXXXXXXXX 59
             MS+  KAW VA S+GAVEALKDQ G  R NY LR + Q    N+RS+ Q  +        
Sbjct:     1 MSSTSKAWTVAVSIGAVEALKDQLGLCRWNYILRSVNQHLRNNVRSVSQGKRFSSSSVSA 60

Query:    60 X--XKVRDDKMNESVESLRKVMYSSC 83
                     +K  ++ ESLR VMY SC
Sbjct:    61 AVTSSGESEKAKKAEESLRTVMYLSC 86

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009611 "response to wounding" evidence=ISS

TAIR|locus:2134188 AT4G33560 "AT4G33560" [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
 Identities = 26/85 (30%), Positives = 39/85 (45%)

Query:     2 SAKGKAWMVAASVGAVEALKDQGFVRRNYSLRFLKQRAETNLRSM-VQANKXXXXXXXXX 60
             + K  +W VA ++ AVE LKDQG  R NY  R L + A   +R++ V +           
Sbjct:     3 AGKQASWAVATAIAAVEVLKDQGVARWNYLFRLLHKEAMARVRTITVPSRPSPPTSSSSA 62

Query:    61 XKVRDDKMNESV--ESLRKVMYSSC 83
               +R   ++ +    S  K M  SC
Sbjct:    63 TSIRSKPLSTTPFETSFEKAMGLSC 87


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.124   0.337    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       83        73   0.00091  102 3  10 22  0.45    28
                                                     29  0.45    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  529 (56 KB)
  Total size of DFA:  112 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.48u 0.12s 9.60t   Elapsed:  00:00:00
  Total cpu time:  9.48u 0.12s 9.60t   Elapsed:  00:00:00
  Start:  Thu May  9 21:05:30 2013   End:  Thu May  9 21:05:30 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00029187001 SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (88 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	83
PLN00165	88	PLN00165, PLN00165, hypothetical protein; Provisio	2e-26
pfam12609	78	pfam12609, DUF3774, Wound-induced protein	1e-16

>gnl|CDD|165732 PLN00165, PLN00165, hypothetical protein; Provisional

 Score = 92.5 bits (229), Expect = 2e-26
 Identities = 56/84 (66%), Positives = 64/84 (76%), Gaps = 1/84 (1%)

Query: 1  MSAKGKAWMVAASVGAVEALKDQGFVRRNYSLRFLKQRAETNLRSMVQANKL-SLSSAMA 59
          MS  GKAW+VAASVGAVEALKDQGF R NY+LR + Q A+ NLRS  QA KL S SSAM 
Sbjct: 1  MSHMGKAWIVAASVGAVEALKDQGFCRWNYTLRSIHQHAKNNLRSFSQAKKLSSSSSAMV 60

Query: 60 LSKVRDDKMNESVESLRKVMYSSC 83
           S+VR++K  +S ESLR VMY SC
Sbjct: 61 SSRVREEKAKQSEESLRTVMYLSC 84

Length = 88

>gnl|CDD|221661 pfam12609, DUF3774, Wound-induced protein

 Score = 67.1 bits (164), Expect = 1e-16
 Identities = 43/75 (57%), Positives = 50/75 (66%), Gaps = 1/75 (1%)

Query: 10 VAASVGAVEALKDQGFVRRNYSLRFLKQRAETNL-RSMVQANKLSLSSAMALSKVRDDKM 68
          VAASVGAVEALKDQG  R NY+LR L Q A+ N  RS  QA K S SS+ A +   + K 
Sbjct: 1  VAASVGAVEALKDQGLCRWNYALRSLHQAAKANARRSASQAGKSSSSSSSASAAAAEVKA 60

Query: 69 NESVESLRKVMYSSC 83
           ++ ESLR VMY SC
Sbjct: 61 KQAEESLRTVMYLSC 75

This family of proteins is found in eukaryotes. Proteins in this family are typically between 81 and 97 amino acids in length. The proteins in the family are often annotated as wound-induced proteins however there is little accompanying literature to confirm this. Length = 78

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	83
PLN00165	88	hypothetical protein; Provisional	100.0
PF12609	79	DUF3774: Wound-induced protein; InterPro: IPR02225	100.0

>PLN00165 hypothetical protein; Provisional

Probab=100.00  E-value=3.6e-48  Score=256.26  Aligned_cols=83  Identities=67%  Similarity=0.921  Sum_probs=76.0

Q ss_pred             CCcchhHHHHHHHHHHHHhhcccCcccchhhHHHHHHHHHHhhhhHHhhhccchh-hHHhhcccccccchhhhhhhhhhh
Q 037730            1 MSAKGKAWMVAASVGAVEALKDQGFVRRNYSLRFLKQRAETNLRSMVQANKLSLS-SAMALSKVRDDKMNESVESLRKVM   79 (83)
Q Consensus         1 Ms~~~~~w~vAaSvgaVEalKDQG~CRwn~alrSl~~~ak~~~~S~sqa~~ls~s-sa~~~~~~~~~k~kqaEEsLRtVM   79 (83)
                      ||+++++|||||||||||+|||||+|||||+|||||||+++|++|++|+++|+++ ++.++...+++|.||+||+|||||
T Consensus         1 Ms~~~r~w~vAaSvgaVEalkDQG~cRwny~lrS~~~~a~~~~~s~s~~~~lss~~~~~~s~~~~~~k~kq~EEsLRtVM   80 (88)
T PLN00165          1 MSHMGKAWIVAASVGAVEALKDQGFCRWNYTLRSIHQHAKNNLRSFSQAKKLSSSSSAMVSSRVREEKAKQSEESLRTVM   80 (88)
T ss_pred             CccchhHHHHHHHHHHHhhccccCeeehhhHHHHHHHHHHhccccccccccCCCcchhhhhhhhccccccchHHhhheee
Confidence            8999999999999999999999999999999999999999999999999999764 334445567788999999999999


Q ss_pred             cccC
Q 037730           80 YSSC   83 (83)
Q Consensus        80 yLSC   83 (83)
                      ||||
T Consensus        81 yLSC   84 (88)
T PLN00165         81 YLSC   84 (88)
T ss_pred             Eecc
Confidence            9999

>PF12609 DUF3774: Wound-induced protein; InterPro: IPR022251 This family of proteins is found in eukaryotes

Probab=100.00  E-value=2.3e-38  Score=204.76  Aligned_cols=74  Identities=55%  Similarity=0.728  Sum_probs=65.6

Q ss_pred             HHHHHHHHHhhccc-CcccchhhHHHHHHHHHHhh-hhHHhhhccchhhHHhhcccccccchhhhhhhhhhhcccC
Q 037730           10 VAASVGAVEALKDQ-GFVRRNYSLRFLKQRAETNL-RSMVQANKLSLSSAMALSKVRDDKMNESVESLRKVMYSSC   83 (83)
Q Consensus        10 vAaSvgaVEalKDQ-G~CRwn~alrSl~~~ak~~~-~S~sqa~~ls~ssa~~~~~~~~~k~kqaEEsLRtVMyLSC   83 (83)
                      ||+||||||+|||| |+|||||+|||+|+++++++ ++.+|+++++++++.......+++.||+||||||||||||
T Consensus         1 vAasvgavealKDq~g~crwn~alrs~~~~a~~~~~~s~~~~~~~~ss~~~~~~~~~~~~~k~aEEsLRtVMyLSC   76 (79)
T PF12609_consen    1 VAASVGAVEALKDQAGLCRWNYALRSLHQHAKANVRGSASQAKRLSSSSSSSSAAAEEEKRKQAEESLRTVMYLSC   76 (79)
T ss_pred             CchhHHHHhccccccccccccHHHHHHHHHhhhccccccccccccCcccccccccccccccchhhhhhceeEEEec
Confidence            68999999999999 99999999999999999998 8889999987643322445677899999999999999999

Proteins in this family are typically between 81 and 97 amino acids in length. The proteins in the family are often annotated as wound-induced proteins however there is little accompanying literature to confirm this.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	83
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 36.0 bits (82), Expect = 5e-04
 Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 24/98 (24%)

Query: 1   MSAKGKAWMVAASVGAVEALKDQGFVRRN----YSLRFLKQRAETNLRSMVQA------- 49
           +   GK W+        +         +     + L      +   +  M+Q        
Sbjct: 158 VLGSGKTWVAL------DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211

Query: 50  NKLSLSSAMALSKVRDDKMNESVESLRKVM----YSSC 83
           N  S S   +  K+R   ++     LR+++    Y +C
Sbjct: 212 NWTSRSDHSSNIKLR---IHSIQAELRRLLKSKPYENC 246

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00