Citrus Sinensis ID: 037735
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 329 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FKD0 | 362 | Probable S-adenosylmethio | no | no | 0.990 | 0.900 | 0.406 | 6e-65 | |
| Q9FKC8 | 362 | Probable S-adenosylmethio | no | no | 0.990 | 0.900 | 0.412 | 2e-64 | |
| Q9FKR0 | 361 | Probable S-adenosylmethio | no | no | 0.990 | 0.903 | 0.399 | 2e-64 | |
| Q9LS10 | 359 | Probable S-adenosylmethio | no | no | 0.914 | 0.838 | 0.417 | 1e-63 | |
| Q9SPV4 | 359 | Salicylate O-methyltransf | N/A | no | 0.936 | 0.857 | 0.344 | 1e-44 | |
| Q9FYZ9 | 364 | Benzoate carboxyl methylt | N/A | no | 0.914 | 0.826 | 0.335 | 1e-43 | |
| Q68CM3 | 365 | Probable caffeine synthas | N/A | no | 0.908 | 0.819 | 0.331 | 2e-43 | |
| Q9FZN8 | 369 | Caffeine synthase 1 OS=Ca | N/A | no | 0.899 | 0.802 | 0.319 | 5e-39 | |
| Q9AVK0 | 372 | 7-methylxanthosine syntha | N/A | no | 0.887 | 0.784 | 0.326 | 9e-39 | |
| A4GE69 | 372 | 7-methylxanthosine syntha | N/A | no | 0.887 | 0.784 | 0.326 | 1e-38 |
| >sp|Q9FKD0|MT797_ARATH Probable S-adenosylmethionine-dependent methyltransferase At5g37970 OS=Arabidopsis thaliana GN=At5g37970 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 248 bits (632), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 144/354 (40%), Positives = 203/354 (57%), Gaps = 28/354 (7%)
Query: 1 MVGGDGAHSYASNSAYQSIQVYILRYDPRTAVTD------LGTNAVPNTFRIADFGCSTG 54
M GGDG HSY NS+YQ + + ++ A+ + L N+ N RI DFGCS G
Sbjct: 10 MNGGDGPHSYIHNSSYQKVAIDGVKERTSEAILEKLDLEFLNRNSEENILRIVDFGCSIG 69
Query: 55 PNTFIAVQNIIDSVELKFQHECPSAI----EFQVFFNDHSDNDFNTLFKSLP--QSRSYY 108
PNTF VQNIID+V+ K E + I EFQV FND +NDFNTLF++ P + Y+
Sbjct: 70 PNTFDVVQNIIDTVKQKRLKENKTYIGAPLEFQVCFNDQPNNDFNTLFRTQPFFSRKEYF 129
Query: 109 AAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVP------KVDGVEGS-IQTRRFVNEVM 161
+ GVPGSF+ + PK+SLH H+SYTLHWLS VP K + S IQ V+EV
Sbjct: 130 SVGVPGSFHGRVLPKNSLHIGHTSYTLHWLSNVPQHVCDKKSPALNKSYIQCNNLVDEVT 189
Query: 162 EAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVEL 221
+AY QF DF FL RA+ELV GGL L +PDGIP G + G CL++L
Sbjct: 190 KAYKIQFRKDFGGFLEARAEELVSGGLMILSGQCLPDGIPKALTWQGVVIDMIGDCLMDL 249
Query: 222 TKMGILSKEKM-------YNPTPKELEGIIQRNGNFTIERMEKMTNPKQQVLCSASDLAV 274
K+GI SKEK+ Y P E + I++N NF +E ME++++P + + +
Sbjct: 250 AKLGITSKEKIELFSLPTYIPHISEFKANIEQNENFNVETMEEISHPMDYMPLTNDFITS 309
Query: 275 AMRAVYEGLVKEHFGDEFVDKIFNHFATKAEENISIIGQRVQDSMMDLFILLKR 328
RA+ +++EHFG+ V+++F+ A + ++ I +R + ++ FI+LKR
Sbjct: 310 MFRAILNTIIEEHFGEGVVNELFSRLAKRLDK-YPIDFKRCK-KYVNYFIVLKR 361
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Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q9FKC8|MT799_ARATH Probable S-adenosylmethionine-dependent methyltransferase At5g37990 OS=Arabidopsis thaliana GN=At5g37990 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 246 bits (628), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 146/354 (41%), Positives = 196/354 (55%), Gaps = 28/354 (7%)
Query: 1 MVGGDGAHSYASNSAYQSIQVYILRYDPRTAVTD------LGTNAVPNTFRIADFGCSTG 54
M GGDG HSY NS+YQ + + + A+ L N+ N RIADFGCS G
Sbjct: 10 MNGGDGPHSYIHNSSYQKVAIDGAKEKTSEAILKNLDLELLNRNSDENILRIADFGCSIG 69
Query: 55 PNTFIAVQNIIDSVELKFQHE----CPSAIEFQVFFNDHSDNDFNTLFKSLPQS--RSYY 108
PNTF VQNIID+V+ K E + +EFQV FND +NDFNTLF++ P S ++Y
Sbjct: 70 PNTFEVVQNIIDTVKQKNLKENNAYIGAPLEFQVCFNDQPNNDFNTLFRTQPISSKQAYL 129
Query: 109 AAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVP------KVDGVEGS-IQTRRFVNEVM 161
+ GVPGSF+ + PK+SLH H +Y LHWLS VP K + S IQ V EV
Sbjct: 130 SVGVPGSFHGRVLPKNSLHIGHITYALHWLSTVPQHVCDKKSPALNKSYIQCNNLVEEVT 189
Query: 162 EAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVEL 221
EAY QF D FL RA+ELV GGL L +PDG+P G + G CL+++
Sbjct: 190 EAYRVQFKKDMGDFLGARAEELVSGGLMILSGQCLPDGVPKALTWQGVVIDMIGDCLMDM 249
Query: 222 TKMGILSKEK-------MYNPTPKELEGIIQRNGNFTIERMEKMTNPKQQVLCSASDLAV 274
K GI +KEK +Y P E + I+RN NF+IE MEK+++P + +
Sbjct: 250 AKQGITTKEKIELFSLPIYIPHISEFKAEIERNENFSIETMEKISHPMDYKPLTNDFITS 309
Query: 275 AMRAVYEGLVKEHFGDEFVDKIFNHFATKAEENISIIGQRVQDSMMDLFILLKR 328
RA+ +++EHFGD V+++F+ FA K N I + ++ FI+LKR
Sbjct: 310 MFRAILNTIIEEHFGDGVVNELFDRFAKKL--NKYPIDFKRCKKYVNYFIVLKR 361
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9FKR0|MT878_ARATH Probable S-adenosylmethionine-dependent methyltransferase At5g38780 OS=Arabidopsis thaliana GN=At5g38780 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 246 bits (627), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 141/353 (39%), Positives = 203/353 (57%), Gaps = 27/353 (7%)
Query: 1 MVGGDGAHSYASNSAYQSIQVYILRYDPRTAVTD----LGTNAVPNTFRIADFGCSTGPN 56
M GGD HSY NS+YQ + ++ R + + L N +TF IADFGCS GPN
Sbjct: 10 MSGGDDQHSYIHNSSYQKAGIDGVQEKARQYILENLDLLNMNPNLSTFTIADFGCSIGPN 69
Query: 57 TFIAVQNIIDSVELKFQHECP-----SAIEFQVFFNDHSDNDFNTLFKSLPQS--RSYYA 109
TF AVQNIID V+LK E + +EFQV+FND +NDFNTLF++ P S + Y++
Sbjct: 70 TFHAVQNIIDIVKLKHLKESQEDSRVAPLEFQVYFNDLPNNDFNTLFRTQPPSSKQEYFS 129
Query: 110 AGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGS-------IQTRRFVNEVME 162
GVPGSFY + P++S+H ++S+T HWLSKVP+ + S I + EV E
Sbjct: 130 VGVPGSFYGRVLPRNSIHIGNTSFTTHWLSKVPEEVCDKNSLAWNKNYIHCNNLIEEVTE 189
Query: 163 AYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELT 222
AY QF D FL RA+ELVPGGL + +PDG+ + +G +T G CL ++
Sbjct: 190 AYKVQFEKDMGVFLKARAEELVPGGLMITLGQCLPDGVAMYETWSGIVKDTIGDCLQDMA 249
Query: 223 KMGILSKEKM-------YNPTPKELEGIIQRNGNFTIERMEKMTNPKQQVLCSASDLAVA 275
+G+ ++EK+ Y P EL+G I++N FTIE ME +++P + V S + +
Sbjct: 250 TLGVTTEEKIEMFNLPVYFPQVSELKGAIEQNIRFTIEMMEIVSHPLEAVQLSNNFITSM 309
Query: 276 MRAVYEGLVKEHFGDEFVDKIFNHFATKAEENISIIGQRVQDSMMDLFILLKR 328
RA+ +++ HFG VD++F FA K E+ I ++ + M+ I+LKR
Sbjct: 310 YRAILSTVIERHFGGSVVDELFRQFAKKLSEH-PIDFEKCKKQMV-YHIVLKR 360
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9LS10|MT810_ARATH Probable S-adenosylmethionine-dependent methyltransferase At5g38100 OS=Arabidopsis thaliana GN=At5g38100 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 243 bits (621), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 137/328 (41%), Positives = 186/328 (56%), Gaps = 27/328 (8%)
Query: 1 MVGGDGAHSYASNSAYQSIQVYILRYDPRTAV---TDLGTNAVPNTFRIADFGCSTGPNT 57
M G HSY NS+YQ + R + DL ++ TFRIADFGCS GPNT
Sbjct: 10 MSSGHDQHSYIHNSSYQKAAISSAVEKTRRCIFEKLDLQLSSDFGTFRIADFGCSIGPNT 69
Query: 58 FIAVQNIIDSVELKFQHECPS----AIEFQVFFNDHSDNDFNTLFKSLPQS--RSYYAAG 111
F Q+IID+V+ K E +EFQVFFND NDFNTLF++ P S R Y++ G
Sbjct: 70 FHVAQSIIDTVKSKRLEESTENSLVPLEFQVFFNDQPTNDFNTLFRTQPLSPEREYFSVG 129
Query: 112 VPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGV---------EGSIQTRRFVNEVME 162
VPGSFY + P++S+H H+SYT HWLSKVP D V + IQ + EV +
Sbjct: 130 VPGSFYGRVLPRNSIHIGHTSYTTHWLSKVP--DNVCDKKSMAWNKNYIQCNNLLEEVTK 187
Query: 163 AYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELT 222
AY QF D + FL+ RA+ELVPGGL ++ +PDG+ L G +T G CL+++
Sbjct: 188 AYKVQFIKDMEIFLDARAEELVPGGLMIVIGECLPDGVSLYETWQGYVMDTIGDCLMDMA 247
Query: 223 KMGILSKEKM-------YNPTPKELEGIIQRNGNFTIERMEKMTNPKQQVLCSASDLAVA 275
K GI S+EK+ Y P EL+G I++NG+FTIE ME ++P + + +
Sbjct: 248 KSGITSEEKIDLFSLPVYFPQFSELKGEIEKNGSFTIELMETTSHPLEGKPLTNDFITST 307
Query: 276 MRAVYEGLVKEHFGDEFVDKIFNHFATK 303
RA ++++HFGD VD++F A K
Sbjct: 308 FRAFLTTIIEKHFGDGVVDELFYRLAKK 335
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9SPV4|SAMT_CLABR Salicylate O-methyltransferase OS=Clarkia breweri GN=SAMT PE=1 SV=1 | Back alignment and function description |
|---|
Score = 180 bits (457), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 115/334 (34%), Positives = 170/334 (50%), Gaps = 26/334 (7%)
Query: 1 MVGGDGAHSYASNSAYQSIQVYILRYDPRTAVTDL-GTNAVPNTFRIADFGCSTGPNTFI 59
M GG G +SYA NS Q + I + A+T L + V IAD GCS+GPN
Sbjct: 9 MKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGCSSGPNALF 68
Query: 60 AVQNIIDSVE-LKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSY----YAAGVPG 114
AV +I +VE L+ + ++ E+Q+F ND NDFN +F+SLP + GVPG
Sbjct: 69 AVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPG 128
Query: 115 SFYSSLFPKSSLHFVHSSYTLHWLSKVP-KVDGVEGSI-QTRRFVNEVMEAYAAQFNNDF 172
SFY LFP+++LHF+HSSY+L WLS+VP ++ +G+I V+ AY QF D
Sbjct: 129 SFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDH 188
Query: 173 QTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKM 232
FL RAQE+VPGG L + + + L ++ G++ +EKM
Sbjct: 189 ALFLRCRAQEVVPGGRMVLTILGRRSE-DRASTECCLIWQLLAMALNQMVSEGLIEEEKM 247
Query: 233 -------YNPTPKELEGIIQRNGNFTIERME----------KMTNPKQQVLCSASDLAVA 275
Y P+P E+E I + G+F I+ +E K + V ++A
Sbjct: 248 DKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCTKDGDGGGSVEEEGYNVARC 307
Query: 276 MRAVYEGLVKEHFGDEFVDKIFNHFATKAEENIS 309
MRAV E L+ +HFG+ ++ +F+ + E +S
Sbjct: 308 MRAVAEPLLLDHFGEAIIEDVFHRYKLLIIERMS 341
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Catalyzes the methylation of the free carboxyl end of the plant hormone salicylic acid (SA). Converts SA to SA methyl ester (MSA). The volatile compound MSA is hypothesized to act as an airborne signal that triggers defense responses in uninfected plants. MSA is an important chemoattractant for moth pollinated flowering plants. Clarkia breweri (taxid: 36903) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: n EC: 9 |
| >sp|Q9FYZ9|BAMT_ANTMA Benzoate carboxyl methyltransferase OS=Antirrhinum majus GN=BAMT PE=1 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (448), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 116/346 (33%), Positives = 180/346 (52%), Gaps = 45/346 (13%)
Query: 2 VGGDGAHSYASNSAYQSIQVYILRYDPRTAVTDLGTNAV--PNTFRIADFGCSTGPNTFI 59
+ GDG SYA+NS Q + + + + D+ + V P F++ D GCS+GPN +
Sbjct: 12 IAGDGETSYANNSGLQKVMMSKSLHVLDETLKDIIGDHVGFPKCFKMMDMGCSSGPNALL 71
Query: 60 AVQNIIDSVE-LKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP-QSRSYYAAGVPGSFY 117
+ II+++E L + EF+VF ND DNDFN LFK L ++ + + G+PGSFY
Sbjct: 72 VMSGIINTIEDLYTEKNINELPEFEVFLNDLPDNDFNNLFKLLSHENGNCFVYGLPGSFY 131
Query: 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVN-----EVMEAYAAQFNNDF 172
L PK SLHF +SSY++HWLS+VP +G+E + + ++ EV +AYA Q+ DF
Sbjct: 132 GRLLPKKSLHFAYSSYSIHWLSQVP--EGLEDNNRQNIYMATESPPEVYKAYAKQYERDF 189
Query: 173 QTFLNTRAQELVPGGLAALVM--FSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKE 230
TFL R +E+VPGG L SV D P + F LV++ G++ +
Sbjct: 190 STFLKLRGEEIVPGGRMVLTFNGRSVED--PSSKDDLAIF-TLLAKTLVDMVAEGLVKMD 246
Query: 231 KM-------YNPTPKELEGIIQRNGNFTIERME---------------KMTNP----KQQ 264
+ Y+P +E+E I G+FT++R+E +P KQ+
Sbjct: 247 DLYSFNIPIYSPCTREVEAAILSEGSFTLDRLEVFRVCWDASDYTDDDDQQDPSIFGKQR 306
Query: 265 VLCSASDLAVAMRAVYEGLVKEHFGDEFVDKIFNHFATKAEENISI 310
S +A +RA+ E ++ HFG +D +F +A K E++S+
Sbjct: 307 ---SGKFVADCVRAITEPMLASHFGSTIMDLLFGKYAKKIVEHLSV 349
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Converts benzoic acid into the volatile ester methyl benzoates. This scent, mostly produced in a rhythmical, diurnal manner, attracts the pollinators. Antirrhinum majus (taxid: 4151) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q68CM3|TCS2_CAMSI Probable caffeine synthase 2 OS=Camellia sinensis GN=TCS2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 176 bits (446), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 110/332 (33%), Positives = 168/332 (50%), Gaps = 33/332 (9%)
Query: 1 MVGGDGAHSYASNSAYQSIQVYILRYDPRTAVTDLGTN--AVPNTFRIADFGCSTGPNTF 58
M G+G SYA NS++ + AV L + + D GC+ GP TF
Sbjct: 10 MNKGEGESSYAQNSSFTQTVTSMTMPVLENAVETLFSKDFHLLQALNAVDLGCAAGPTTF 69
Query: 59 IAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--------QSRSYYAA 110
+ I +E K + +E QV+ ND NDFNTLFK LP + S Y
Sbjct: 70 TVISTIKRMMEKKCRELNCQTLELQVYLNDLPGNDFNTLFKGLPSKVVGNKCEEVSCYVV 129
Query: 111 GVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPK----VDGV---EGSIQTRRFVNEVM-E 162
GVPGSF+ LFP++SLH VHS Y++HWL++ PK +G+ +G I + V+ E
Sbjct: 130 GVPGSFHGRLFPRNSLHLVHSCYSVHWLTQAPKGLTSKEGLALNKGKIYISKTSPPVVRE 189
Query: 163 AYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSF-YNTFGSCLVEL 221
AY +QF+ DF FLN+R+QE+VP G L++ P ++ F + + EL
Sbjct: 190 AYLSQFHEDFTMFLNSRSQEVVPNGCMVLILRGRLSSDP--SDMGSCFTWELLAVAIAEL 247
Query: 222 TKMGILSKEKM-------YNPTPKELEGIIQRNGNFTIERME--KMTNPKQQ---VLCSA 269
G++ ++K+ Y P+ +E++ I++RNG+FTI+ ME ++ +P+ Q
Sbjct: 248 VSQGLIDEDKLDTFNVPSYFPSLEEVKDIVERNGSFTIDHMEGFELDSPEMQENDKWVRG 307
Query: 270 SDLAVAMRAVYEGLVKEHFGDEFVDKIFNHFA 301
A RA E ++ FG E +DK++ F
Sbjct: 308 EKFATVARAFTEPIISNQFGHEIMDKLYEKFT 339
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May be involved in the biosynthesis of caffeine. Catalyzes the conversion of 7-methylxanthine (7mX) to theobromine and of theobromine to caffeine. Has 1-N-methylation activity. Camellia sinensis (taxid: 4442) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 0 |
| >sp|Q9FZN8|TCS1_CAMSI Caffeine synthase 1 OS=Camellia sinensis GN=TCS1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 162 bits (409), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 106/332 (31%), Positives = 167/332 (50%), Gaps = 36/332 (10%)
Query: 1 MVGGDGAHSYASNSAYQSIQVYILRYDPRTAVTDLGTNAVP-NTFRIADFGCSTGPNTFI 59
M G+G SYA NS++ + + AV L + AD GC+ GPNTF
Sbjct: 15 MNRGEGESSYAQNSSFTQQVASMAQPALENAVETLFSRDFHLQALNAADLGCAAGPNTFA 74
Query: 60 AVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--------QSRSYYAAG 111
+ I +E K + +E QV+ ND NDFNTLFK L + Y G
Sbjct: 75 VISTIKRMMEKKCRELNCQTLELQVYLNDLFGNDFNTLFKGLSSEVIGNKCEEVPCYVMG 134
Query: 112 VPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPK-VDGVEGSI--QTRRFVNE-----VMEA 163
VPGSF+ LFP++SLH VHSSY++HWL++ PK + EG + + ++++ V EA
Sbjct: 135 VPGSFHGRLFPRNSLHLVHSSYSVHWLTQAPKGLTSREGLALNKGKIYISKTSPPVVREA 194
Query: 164 YAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSF-YNTFGSCLVELT 222
Y +QF+ DF FLN R+QE+VP G L++ P ++ F + + EL
Sbjct: 195 YLSQFHEDFTMFLNARSQEVVPNGCMVLILRGRQCSDP--SDMQSCFTWELLAMAIAELV 252
Query: 223 KMGILSKEKM-------YNPTPKELEGIIQRNGNFTIERME-------KMTNPKQQVLCS 268
G++ ++K+ Y + +E++ I++R+G+FTI+ +E +M + V
Sbjct: 253 SQGLIDEDKLDTFNIPSYFASLEEVKDIVERDGSFTIDHIEGFDLDSVEMQENDKWV--R 310
Query: 269 ASDLAVAMRAVYEGLVKEHFGDEFVDKIFNHF 300
+RA E ++ FG E +DK+++ F
Sbjct: 311 GEKFTKVVRAFTEPIISNQFGPEIMDKLYDKF 342
|
Involved in the biosynthesis of caffeine. Catalyzes the conversion of 7-methylxanthine (7mX) to theobromine and of theobromine to caffeine. Has 3-N- and 1-N-methylation activity. Camellia sinensis (taxid: 4442) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 6 EC: 0 |
| >sp|Q9AVK0|XMT1_COFAR 7-methylxanthosine synthase 1 OS=Coffea arabica GN=XMT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 160 bits (406), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 114/349 (32%), Positives = 174/349 (49%), Gaps = 57/349 (16%)
Query: 1 MVGGDGAHSYASNSAYQSIQVYILRYDPRTAVTDLGTNAVPN---TFRIADFGCSTGPNT 57
M GG+G SYA NSAY + + ++ V +L +PN ++AD GC++GPNT
Sbjct: 9 MNGGEGDTSYAKNSAYNQLVLAKVKPVLEQCVRELLRANLPNINKCIKVADLGCASGPNT 68
Query: 58 FIAVQNIIDSVELKFQHECPSAIE---FQVFFNDHSDNDFNTLFKSLP------------ 102
+ V++I+ S++ K E + +E Q+F ND NDFN++FK LP
Sbjct: 69 LLTVRDIVQSID-KVGQEKKNELERPTIQIFLNDLFPNDFNSVFKLLPSFYRKLEKENGR 127
Query: 103 QSRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPK-------VDGVEGSIQTRR 155
+ S +PGSFYS LFP+ S+HF+HS Y L WLS+VP + +GSI + +
Sbjct: 128 KIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLQWLSQVPSGLVTELGISTNKGSIYSSK 187
Query: 156 FVN-EVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPL-VNNAAGSFYNT 213
V +AY QF DF TFL ++EL G +++ + G+ L NA
Sbjct: 188 ASRLPVQKAYLDQFTKDFTTFLRIHSEELFSHG--RMLLTCICKGVELDARNAIDLLEMA 245
Query: 214 FGSCLVELTKMGILSKEKM-------YNPTPKELEGIIQRNGNFTIERMEKMTNPKQQVL 266
+VE G L +EK+ Y P+ +E++ I++ G+F I +E +VL
Sbjct: 246 INDLVVE----GHLEEEKLDSFNLPVYIPSAEEVKCIVEEEGSFEILYLETF-----KVL 296
Query: 267 -----------CSASDLAVAMRAVYEGLVKEHFGDEFVDKIFNHFATKA 304
A +A ++RAVYE ++ HFG+ + IF+ FA A
Sbjct: 297 YDAGFSIDDEHIKAEYVASSVRAVYEPILASHFGEAIIPDIFHRFAKHA 345
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Involved in the biosynthesis of caffeine. Specific for xanthosine and could not use xanthosine 5'-monophosphate (XMP) as substrate. Catalyzes the 7-N-methylation activity of xanthosine, but does not have 1-N- or 3-N-methylation activity. Coffea arabica (taxid: 13443) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 8 |
| >sp|A4GE69|XMT1_COFCA 7-methylxanthosine synthase 1 OS=Coffea canephora GN=XMT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 160 bits (405), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 114/349 (32%), Positives = 174/349 (49%), Gaps = 57/349 (16%)
Query: 1 MVGGDGAHSYASNSAYQSIQVYILRYDPRTAVTDLGTNAVPN---TFRIADFGCSTGPNT 57
M GG+G SYA NSAY + + ++ V +L +PN ++AD GC++GPNT
Sbjct: 9 MNGGEGDTSYAKNSAYNQLVLAKVKPVLEQCVRELLRANLPNINKCIKVADLGCASGPNT 68
Query: 58 FIAVQNIIDSVELKFQHECPSAIE---FQVFFNDHSDNDFNTLFKSLP------------ 102
+ V++I+ S++ K E + +E Q+F ND NDFN++FK LP
Sbjct: 69 LLTVRDIVQSID-KVGQEKKNELERPTIQIFLNDLFPNDFNSVFKLLPSFYRKLEKENGR 127
Query: 103 QSRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPK-------VDGVEGSIQTRR 155
+ S +PGSFYS LFP+ S+HF+HS Y L WLS+VP + +GSI + +
Sbjct: 128 KIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLQWLSQVPSGLVTELGIGTNKGSIYSSK 187
Query: 156 FVN-EVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPL-VNNAAGSFYNT 213
V +AY QF DF TFL ++EL G +++ + G+ L NA
Sbjct: 188 ASRLPVQKAYLDQFTKDFTTFLRIHSEELFSHG--RMLLTCICKGVELDARNAIDLLEMA 245
Query: 214 FGSCLVELTKMGILSKEKM-------YNPTPKELEGIIQRNGNFTIERMEKMTNPKQQVL 266
+VE G L +EK+ Y P+ +E++ I++ G+F I +E +VL
Sbjct: 246 INDLVVE----GHLEEEKLDSFNLPVYIPSAEEVKCIVEEEGSFEILYLETF-----KVL 296
Query: 267 -----------CSASDLAVAMRAVYEGLVKEHFGDEFVDKIFNHFATKA 304
A +A ++RAVYE ++ HFG+ + IF+ FA A
Sbjct: 297 YDAGFSIDDEHIKAEYVASSVRAVYEPILASHFGEAIIPDIFHRFAKHA 345
|
Involved in the biosynthesis of caffeine. Specific for xanthosine. Cannot use xanthosine 5'-monophosphate (XMP) as substrate. Directly produces 7-methylxanthine, and therefore the methyl transfer and nucleoside cleavage may be coupled. Catalyzes the 7-N-methylation of xanthosine, but does not have 1-N- or 3-N-methylation activity. Coffea canephora (taxid: 49390) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 329 | ||||||
| 224069525 | 370 | predicted protein [Populus trichocarpa] | 0.990 | 0.881 | 0.484 | 3e-82 | |
| 224144825 | 351 | predicted protein [Populus trichocarpa] | 0.996 | 0.934 | 0.444 | 8e-77 | |
| 147833899 | 521 | hypothetical protein VITISV_030502 [Viti | 0.993 | 0.627 | 0.451 | 5e-76 | |
| 225462819 | 377 | PREDICTED: probable S-adenosylmethionine | 0.993 | 0.867 | 0.451 | 2e-75 | |
| 296087219 | 806 | unnamed protein product [Vitis vinifera] | 0.993 | 0.405 | 0.451 | 2e-75 | |
| 224111418 | 357 | predicted protein [Populus trichocarpa] | 0.984 | 0.907 | 0.421 | 1e-69 | |
| 225462821 | 355 | PREDICTED: probable S-adenosylmethionine | 0.984 | 0.912 | 0.432 | 5e-68 | |
| 225456081 | 369 | PREDICTED: probable S-adenosylmethionine | 0.993 | 0.886 | 0.433 | 6e-68 | |
| 147833898 | 358 | hypothetical protein VITISV_030501 [Viti | 0.984 | 0.905 | 0.432 | 1e-67 | |
| 158426688 | 371 | loganic acid methyltransferase [Catharan | 0.990 | 0.878 | 0.406 | 3e-66 |
| >gi|224069525|ref|XP_002302990.1| predicted protein [Populus trichocarpa] gi|222844716|gb|EEE82263.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 311 bits (796), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 172/355 (48%), Positives = 224/355 (63%), Gaps = 29/355 (8%)
Query: 1 MVGGDGAHSYASNSAYQSIQVYILRYDPRTAVTD------LGTNAVPNTFRIADFGCSTG 54
MVGGDG SY NSAYQ V + + D LG ++ +TFRIADFGCS G
Sbjct: 15 MVGGDGPQSYTQNSAYQKGVVDASKEKVTEGIKDKLDFKSLGFDSSNDTFRIADFGCSVG 74
Query: 55 PNTFIAVQNIIDSVELK----FQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAA 110
PNTF AV+NII++VE K FQ P +EFQVFFND + NDFNTLFK+L +R Y+AA
Sbjct: 75 PNTFFAVENIIEAVEQKYQAQFQKSPPLELEFQVFFNDVTTNDFNTLFKTLHSNRKYFAA 134
Query: 111 GVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPK--VDGV-----EGSIQTRRFVNEVMEA 163
G+PG+FY L PKS+LHF +SSY L WLSKVPK VD +GSIQ EV +A
Sbjct: 135 GLPGTFYGRLLPKSTLHFAYSSYCLQWLSKVPKEVVDSKSPAWNKGSIQCDGLKKEVTKA 194
Query: 164 YAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTK 223
Y+AQF +D TFLN RAQE+V GGL ++M +PDGI + G +Y GSCLV++ K
Sbjct: 195 YSAQFQSDMNTFLNARAQEIVGGGLMVIIMAGLPDGIFMSQAGVGMYYELLGSCLVDMAK 254
Query: 224 MGILSKEK-------MYNPTPKELEGIIQRNGNFTIERMEKMTNPKQQVLCSASDLAVAM 276
+G +S+EK +Y + E+E II+ NGNF IE M+ +++ + S++ V++
Sbjct: 255 LGEISEEKVDSFNLPLYYSSSTEIEEIIKENGNFNIEIMDSLSHQIWKT-SKKSNIEVSV 313
Query: 277 ---RAVYEGLVKEHFGDEFVDKIFNHFATKAEENISIIGQRVQDSMMDLFILLKR 328
RAV++GLV+EHFG E V+K F HFA K +N SI + +D FILLKR
Sbjct: 314 SGGRAVFQGLVEEHFGSEVVEKTFEHFAKKLVDNFSIFDGAAHEH-IDHFILLKR 367
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224144825|ref|XP_002336178.1| predicted protein [Populus trichocarpa] gi|222875362|gb|EEF12493.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 293 bits (750), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 156/351 (44%), Positives = 217/351 (61%), Gaps = 23/351 (6%)
Query: 1 MVGGDGAHSYASNSAYQSIQVYILR-------YDPRTAVTDLGTNAVPNTFRIADFGCST 53
MVGGDG SYA NS+YQ + I+ D ++ ++ TFRIADFGCS
Sbjct: 1 MVGGDGPRSYAQNSSYQRGGLVIVNELMNEGIKDKLEFISPCSDSSNICTFRIADFGCSA 60
Query: 54 GPNTFIAVQNIIDSVELKF--QHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAG 111
GPNTF+A++ II++VE K+ Q + +EFQVFFND + NDFNTLFK+LP + Y+AAG
Sbjct: 61 GPNTFLAMEKIIEAVEQKYHAQFKNSPPLEFQVFFNDVTTNDFNTLFKTLPLYQKYFAAG 120
Query: 112 VPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPK--VDGV-----EGSIQTRRFVNEVMEAY 164
VPG+FY LFPKS+L +SSY+LHWLSKVP+ VD +GSIQ EV +AY
Sbjct: 121 VPGTFYGRLFPKSTLRLAYSSYSLHWLSKVPEEVVDTKSPAWNKGSIQCSGTAKEVAKAY 180
Query: 165 AAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKM 224
+AQF D FLN RAQE++ GGL +++ +PDGI L AG Y FGSCL+++ K+
Sbjct: 181 SAQFKTDMDNFLNARAQEIIGGGLMVIIILGLPDGILLSQTVAGKSYELFGSCLIDMAKL 240
Query: 225 GILSKEK-------MYNPTPKELEGIIQRNGNFTIERMEKMTNPKQQVLCSASDLAVAMR 277
G++S+EK +Y + KELE II+ +G+F IER+ + +P + R
Sbjct: 241 GVISEEKVDTFNLPLYYSSAKELEEIIKNHGHFCIERLNMLNHPMMKRKIDVQSHISQFR 300
Query: 278 AVYEGLVKEHFGDEFVDKIFNHFATKAEENISIIGQRVQDSMMDLFILLKR 328
++++GL++ HFG + VDKI + A K EN + + ++ FILLKR
Sbjct: 301 SIFQGLLEAHFGRDDVDKILEYHAKKLAENYDSVFNVAKHQHVEHFILLKR 351
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147833899|emb|CAN73170.1| hypothetical protein VITISV_030502 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 157/348 (45%), Positives = 208/348 (59%), Gaps = 21/348 (6%)
Query: 1 MVGGDGAHSYASNSAYQSIQVYILRYDPRTAVTD-LGTN----AVPNTFRIADFGCSTGP 55
M GDG +SYA S+YQ V + A++D L N NT RIAD GCS GP
Sbjct: 145 MNSGDGPYSYAKYSSYQKAIVDAAKKMLVEAISDNLDINNPSFGSSNTLRIADMGCSIGP 204
Query: 56 NTFIAVQNIIDSVELKFQ--HECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVP 113
N FIAVQNI+++V LK+Q + P A+EF VFFNDH NDFN LF+SLP SR Y+A GVP
Sbjct: 205 NAFIAVQNIVEAVTLKYQSMQQKPQALEFHVFFNDHXANDFNALFRSLPPSRPYFAVGVP 264
Query: 114 GSFYSSLFPKSSLHFVHSSYTLHWLSKVPK------VDGVEGSIQTRRFVNEVMEAYAAQ 167
GSF+ LFPKSSLH VHSSY LHWLSKVPK G++ EV+E +++Q
Sbjct: 265 GSFHGRLFPKSSLHIVHSSYALHWLSKVPKEVMEJNFLGLKNGRNYSTTDEEVLEVFSSQ 324
Query: 168 FNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGIL 227
+ D Q+FL RAQELV GGL L++ + +G +G +N FGSCL+++ G++
Sbjct: 325 YKRDMQSFLTARAQELVGGGLMVLLVTGMQNGAIFSKTCSGMVFNLFGSCLMDMANAGLV 384
Query: 228 SKEKMYN-------PTPKELEGIIQRNGNFTIERMEKMTNPKQQVLCSASDLAVAMRAVY 280
S EK+Y+ TPKELE +I+ NG F IER+E + P + L + +RA
Sbjct: 385 SNEKVYSFHFPLYYTTPKELEALIETNGYFNIERIEILARPLEHELPDYRICSFHLRAAM 444
Query: 281 EGLVKEHFGDEFVDKIFNHFATKAEENISIIGQRVQDSMMDLFILLKR 328
EGLV+EHFG E ++ +F + K EN I + + LF+ L+R
Sbjct: 445 EGLVEEHFGKEIIEDLFERYTNKLGENSFIFDEEYRKE-THLFVFLRR 491
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225462819|ref|XP_002266476.1| PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g37990 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 289 bits (739), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 157/348 (45%), Positives = 208/348 (59%), Gaps = 21/348 (6%)
Query: 1 MVGGDGAHSYASNSAYQSIQVYILRYDPRTAVTD-LGTN----AVPNTFRIADFGCSTGP 55
M GDG +SYA S+YQ V + A++D L N NT RIAD GCS GP
Sbjct: 1 MNSGDGPYSYAKYSSYQKAIVDAAKKMLVEAISDNLDINNPSFGSSNTLRIADMGCSIGP 60
Query: 56 NTFIAVQNIIDSVELKFQ--HECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVP 113
N FIAVQNI+++V LK+Q + P A+EF VFFNDH NDFN LF+SLP SR Y+A GVP
Sbjct: 61 NAFIAVQNIVEAVTLKYQSMQQKPQALEFHVFFNDHIANDFNALFRSLPPSRPYFAVGVP 120
Query: 114 GSFYSSLFPKSSLHFVHSSYTLHWLSKVPK------VDGVEGSIQTRRFVNEVMEAYAAQ 167
GSF+ LFPKSSLH VHSSY LHWLSKVPK G++ EV+E +++Q
Sbjct: 121 GSFHGRLFPKSSLHIVHSSYALHWLSKVPKEVMEINFLGLKNGRNYSTTDEEVLEVFSSQ 180
Query: 168 FNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGIL 227
+ D Q+FL RAQELV GGL L++ + +G +G +N FGSCL+++ G++
Sbjct: 181 YKRDMQSFLTARAQELVGGGLMVLLVTGMQNGAIFSKTCSGMVFNLFGSCLMDMANAGLV 240
Query: 228 SKEKMYN-------PTPKELEGIIQRNGNFTIERMEKMTNPKQQVLCSASDLAVAMRAVY 280
S EK+Y+ TPKELE +I+ NG F IER+E + P + L + +RA
Sbjct: 241 SNEKVYSFHFPLYYTTPKELEALIETNGYFNIERIEILARPLEHELPDYRICSFHLRAAM 300
Query: 281 EGLVKEHFGDEFVDKIFNHFATKAEENISIIGQRVQDSMMDLFILLKR 328
EGLV+EHFG E ++ +F + K EN I + + LF+ L+R
Sbjct: 301 EGLVEEHFGKEIIEDLFERYTNKLGENSFIFDEEYRKE-THLFVFLRR 347
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296087219|emb|CBI33593.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 157/348 (45%), Positives = 208/348 (59%), Gaps = 21/348 (6%)
Query: 1 MVGGDGAHSYASNSAYQSIQVYILRYDPRTAVTD-LGTN----AVPNTFRIADFGCSTGP 55
M GDG +SYA S+YQ V + A++D L N NT RIAD GCS GP
Sbjct: 430 MNSGDGPYSYAKYSSYQKAIVDAAKKMLVEAISDNLDINNPSFGSSNTLRIADMGCSIGP 489
Query: 56 NTFIAVQNIIDSVELKFQ--HECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVP 113
N FIAVQNI+++V LK+Q + P A+EF VFFNDH NDFN LF+SLP SR Y+A GVP
Sbjct: 490 NAFIAVQNIVEAVTLKYQSMQQKPQALEFHVFFNDHIANDFNALFRSLPPSRPYFAVGVP 549
Query: 114 GSFYSSLFPKSSLHFVHSSYTLHWLSKVPK------VDGVEGSIQTRRFVNEVMEAYAAQ 167
GSF+ LFPKSSLH VHSSY LHWLSKVPK G++ EV+E +++Q
Sbjct: 550 GSFHGRLFPKSSLHIVHSSYALHWLSKVPKEVMEINFLGLKNGRNYSTTDEEVLEVFSSQ 609
Query: 168 FNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGIL 227
+ D Q+FL RAQELV GGL L++ + +G +G +N FGSCL+++ G++
Sbjct: 610 YKRDMQSFLTARAQELVGGGLMVLLVTGMQNGAIFSKTCSGMVFNLFGSCLMDMANAGLV 669
Query: 228 SKEKMYN-------PTPKELEGIIQRNGNFTIERMEKMTNPKQQVLCSASDLAVAMRAVY 280
S EK+Y+ TPKELE +I+ NG F IER+E + P + L + +RA
Sbjct: 670 SNEKVYSFHFPLYYTTPKELEALIETNGYFNIERIEILARPLEHELPDYRICSFHLRAAM 729
Query: 281 EGLVKEHFGDEFVDKIFNHFATKAEENISIIGQRVQDSMMDLFILLKR 328
EGLV+EHFG E ++ +F + K EN I + + LF+ L+R
Sbjct: 730 EGLVEEHFGKEIIEDLFERYTNKLGENSFIFDEEYRKE-THLFVFLRR 776
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224111418|ref|XP_002315848.1| predicted protein [Populus trichocarpa] gi|222864888|gb|EEF02019.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 150/356 (42%), Positives = 213/356 (59%), Gaps = 32/356 (8%)
Query: 1 MVGGDGAHSYASNSAYQSIQVYILRYDPRTAVT---DLGT-NAVPNTFRIADFGCSTGPN 56
M GG+G +SYA NS Q +R A+ D+ T + +F IADFGCSTGPN
Sbjct: 5 MNGGNGTYSYAKNSTLQRKSANAVREKIDEAIAEKLDMETLCSSGKSFHIADFGCSTGPN 64
Query: 57 TFIAVQNIIDSVELKFQHECPSAI--EFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPG 114
TFIA+QNI++SVE K++ +CP+ EFQ FFND + NDFNTLF +LP R Y+ AGVPG
Sbjct: 65 TFIAMQNILESVERKYKSQCPTRQIPEFQAFFNDQASNDFNTLFTTLPLDRQYFVAGVPG 124
Query: 115 SFYSSLFPKSSLHFVHSSYTLHWLSKVPK--VDGVEGSIQTRRF-----VNEVMEAYAAQ 167
SF+ LFP SSLHF +SS LHWLSKVP+ +D S R +++V++AY++Q
Sbjct: 125 SFHGRLFPDSSLHFAYSSTALHWLSKVPEELLDKNSPSFNKGRIYYSNTLDKVVDAYSSQ 184
Query: 168 FNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGIL 227
F D + FL+ RA+ELV GG+ + M P+GIP G + SC +++ GI+
Sbjct: 185 FAKDMEIFLDARAKELVAGGMLVMTMPGQPNGIPCCQTGMGMTIDYLESCFLDMVNEGII 244
Query: 228 SKEK-------MYNPTPKELEGIIQRNGNFTIERMEKM-----TNPKQQVLCSASDLAVA 275
S+ K MY+ T +E++ +IQRNG+F +E+ME +NP+ S L +
Sbjct: 245 SEAKVDSFNLPMYSATLEEMKELIQRNGSFNVEKMELTMANGESNPQSYSSYSGRMLQMH 304
Query: 276 MRAVYEGLVKEHFGDEFVDKIFNHFATKAEENISIIGQRVQDSMMD---LFILLKR 328
+RA E ++ +HFG E +D +F+ +A KAE+ R+Q S LF++LKR
Sbjct: 305 LRAGIEEIISKHFGTEIIDDLFDRYAMKAED----FSHRLQSSERKGALLFVVLKR 356
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225462821|ref|XP_002266547.1| PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g38780-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 264 bits (674), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 151/349 (43%), Positives = 208/349 (59%), Gaps = 25/349 (7%)
Query: 1 MVGGDGAHSYASNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIA 60
M GG+G +SY NS+ Q V + AV + F IAD GCS GPNTFI
Sbjct: 8 MNGGNGQYSYTRNSSIQRWGVEASKALIGEAVWEKLDTNFSTLFNIADLGCSVGPNTFIV 67
Query: 61 VQNIIDSVELKFQHECPSA--IEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYS 118
V+NII+SV+LK+ P++ IEFQVFFND + NDFNTL++SLP+ R Y A+ VPGSF+
Sbjct: 68 VENIIESVKLKYPSPNPNSEGIEFQVFFNDLASNDFNTLYRSLPRDREYAASIVPGSFHG 127
Query: 119 SLFPKSSLHFVHSSYTLHWLSKVPK--VD-----GVEGSIQTRRFVNEVMEAYAAQFNND 171
LFPKSSLHF+HSSYTLHWLSKVPK +D +G I NEV++AY+AQF D
Sbjct: 128 RLFPKSSLHFIHSSYTLHWLSKVPKELLDKNSPAWNKGRISYGSAPNEVVQAYSAQFAKD 187
Query: 172 FQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEK 231
+FL RAQELV GGL AL++ +P + + G L+++ +MG++S+ K
Sbjct: 188 MGSFLKARAQELVHGGLMALIIPCLPVDTSPSECPLIAVMDLLGDSLMDMARMGLISEAK 247
Query: 232 M-------YNPTPKELEGIIQRNGNFTIERMEKMTNPKQQVLCSASDLAVAM-----RAV 279
+ Y PT EL+ +I+RNG F+I+R T P Q A DL + RA
Sbjct: 248 VDSFNFPKYYPTQHELKTLIERNGYFSIDR----TEPLAQSTTHARDLNFQIFISHTRAA 303
Query: 280 YEGLVKEHFGDEFVDKIFNHFATKAEENISIIGQRVQDSMMDLFILLKR 328
+EG++K HFG + +D +F+ F K + +I + + ++F+LLKR
Sbjct: 304 WEGVIKMHFGSDIIDGLFDRFMKKVLKFSPLISRHSSKQIAEIFVLLKR 352
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456081|ref|XP_002277876.1| PREDICTED: probable S-adenosylmethionine-dependent methyltransferase At5g38780 [Vitis vinifera] gi|297734281|emb|CBI15528.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 263 bits (673), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 153/353 (43%), Positives = 213/353 (60%), Gaps = 26/353 (7%)
Query: 1 MVGGDGAHSYASNSAYQSIQVYILRYDPRTAVT---DLGTNAVPNTFRIADFGCSTGPNT 57
M GDG +SY++NS Q + + A+ D+ + T R+AD GCS GPNT
Sbjct: 16 MKSGDGLYSYSNNSYLQRGVMNAAKQIVSEAIVENLDILKFSPSTTVRVADLGCSVGPNT 75
Query: 58 FIAVQNIIDSVELKFQHE-CPSAI-EFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGS 115
F AVQNI++++EL+ Q++ S I EFQVFFNDH+ NDFN+LF SLP +R Y+AAGVPGS
Sbjct: 76 FFAVQNILEAIELECQNQGLDSQIPEFQVFFNDHTSNDFNSLFSSLPPNRRYHAAGVPGS 135
Query: 116 FYSSLFPKSSLHFVHSSYTLHWLSKVPK--VDGV-----EGSIQTRRFVNEVMEAYAAQF 168
FYS LFP SLH VHSS + WLS+VPK VD +G I +EV+EAY+AQ
Sbjct: 136 FYSRLFPNRSLHIVHSSCAIQWLSRVPKKVVDRSSQAWNKGRIYYPSAADEVVEAYSAQC 195
Query: 169 NNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILS 228
D FL RAQE+ GGL L+ + PD IP A ++ G CL+++ K GI+S
Sbjct: 196 AEDMARFLQARAQEIADGGLMILIFAARPDEIPHSQLVANIMHDMLGCCLMDMAKKGIVS 255
Query: 229 KEK-------MYNPTPKELEGIIQRNGNFTIERMEKM--TNPKQQVLCSASDLAVAM--- 276
+EK +Y+ + +ELE ++RNG F+IERME + + Q L S A A+
Sbjct: 256 EEKVDMFNLPVYHMSDQELEAAVERNGCFSIERMESLPPISSTLQSLVSTRHKAQAISFH 315
Query: 277 -RAVYEGLVKEHFGDEFVDKIFNHFATKAEENISIIGQRVQDSMMDLFILLKR 328
RA E L+K HFG+E +D++F+ ++ K E+ S+I + S ++L +LKR
Sbjct: 316 VRAAMEDLIKAHFGEEILDQLFDSYSKKLEQEYSLI-ESAGTSALNLCAVLKR 367
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147833898|emb|CAN73169.1| hypothetical protein VITISV_030501 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 151/349 (43%), Positives = 207/349 (59%), Gaps = 25/349 (7%)
Query: 1 MVGGDGAHSYASNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIA 60
M GG+G +SY NS+ Q V + AV + F IAD GCS GPNTFI
Sbjct: 11 MNGGNGQYSYTRNSSIQXWGVEASKALIGEAVWEKLDTNFSTLFNIADLGCSVGPNTFIV 70
Query: 61 VQNIIDSVELKFQHECPSA--IEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYS 118
V+NII+SV+LK+ P++ IEFQVFFND + NDFNTL +SLP+ R Y A+ VPGSF+
Sbjct: 71 VENIIESVKLKYPSPNPNSEGIEFQVFFNDLASNDFNTLXRSLPRDREYAASIVPGSFHG 130
Query: 119 SLFPKSSLHFVHSSYTLHWLSKVPK--VD-----GVEGSIQTRRFVNEVMEAYAAQFNND 171
LFPKSSLHF+HSSYTLHWLSKVPK +D +G I NEV++AY+AQF D
Sbjct: 131 RLFPKSSLHFIHSSYTLHWLSKVPKELLDKNSPAWNKGRISYGSAPNEVVQAYSAQFAKD 190
Query: 172 FQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEK 231
+FL RAQELV GGL AL++ +P + + G L+++ +MG++S+ K
Sbjct: 191 MGSFLKARAQELVHGGLMALIIPCLPVDTSPSECPLIAVMDLLGDSLMDMARMGLISEAK 250
Query: 232 M-------YNPTPKELEGIIQRNGNFTIERMEKMTNPKQQVLCSASDLAVAM-----RAV 279
+ Y PT EL+ +I+RNG F+I+R T P Q A DL + RA
Sbjct: 251 VDSFNFPKYYPTQHELKTLIERNGYFSIDR----TEPLAQSTTHARDLNFQIFISHTRAA 306
Query: 280 YEGLVKEHFGDEFVDKIFNHFATKAEENISIIGQRVQDSMMDLFILLKR 328
+EG++K HFG + +D +F+ F K + +I + + ++F+LLKR
Sbjct: 307 WEGVIKMHFGSDIIDGLFDRFMKKVLKFSPLISRHSSKQIAEIFVLLKR 355
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|158426688|gb|ABW38009.1| loganic acid methyltransferase [Catharanthus roseus] | Back alignment and taxonomy information |
|---|
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 142/349 (40%), Positives = 208/349 (59%), Gaps = 23/349 (6%)
Query: 1 MVGGDGAHSYASNSAYQSIQVYILRYDPRTAVT---DLGTNAVPNT---FRIADFGCSTG 54
M GGD +HSY+ NS YQ + + AV DL N + + FRIADFGCSTG
Sbjct: 22 MKGGDDSHSYSQNSCYQKGVIDAAKAVIVEAVNEKLDLENNPIFDPIKPFRIADFGCSTG 81
Query: 55 PNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPG 114
PNTF A+QNI++SVE K++ EF VFFNDH +NDFN LF+SLP +R ++AAGVPG
Sbjct: 82 PNTFHAMQNIVESVETKYK-SLQKTPEFHVFFNDHVNNDFNVLFRSLPPNREFFAAGVPG 140
Query: 115 SFYSSLFPKSSLHFVHSSYTLHWLSKVPK-------VDGVEGSIQTRRFVNEVMEAYAAQ 167
SFY+ +FPK+S+HF H SY LHWLSKVPK + +G I V++AY Q
Sbjct: 141 SFYTRVFPKNSIHFAHCSYALHWLSKVPKEIQDKNSLAYNKGRIHYTGTEKHVVKAYFGQ 200
Query: 168 FNNDFQTFLNTRAQELVPGGLAALVMFSVPDG-IPLVNNAAGSFYNTFGSCLVELTKMGI 226
F DF+ FL RAQE+V GGL + + +P G + AG + G+ L+EL GI
Sbjct: 201 FQRDFEGFLKARAQEIVVGGLMVIQIPGLPSGEVLFSRTGAGLLHFLLGTSLMELVNKGI 260
Query: 227 LSKEKM-------YNPTPKELEGIIQRNGNFTIERMEKMTNPKQQVLCSASDLAVAMRAV 279
+++E + Y+P+ ++LE +I+ N FTIER+ + +P + + ++ +RA+
Sbjct: 261 INEESVDSFNLPQYHPSVEDLEMVIEMNDCFTIERVGTLPHPMKNLPFDVQRTSLQVRAI 320
Query: 280 YEGLVKEHFGDEFVDKIFNHFATKAEENISIIGQRVQDSMMDLFILLKR 328
E ++ EHFG+ +D +F + +EN + + ++ DL+++LKR
Sbjct: 321 MECILTEHFGENILDPLFEIYTKNLQENFHVFDKEIRKD-ADLYLVLKR 368
|
Source: Catharanthus roseus Species: Catharanthus roseus Genus: Catharanthus Family: Apocynaceae Order: Gentianales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 329 | ||||||
| TAIR|locus:504956193 | 351 | AT1G15125 [Arabidopsis thalian | 0.987 | 0.925 | 0.411 | 9.3e-59 | |
| TAIR|locus:2144461 | 359 | AT5G38100 [Arabidopsis thalian | 0.984 | 0.902 | 0.402 | 1.5e-58 | |
| TAIR|locus:2082157 | 348 | AT3G44840 [Arabidopsis thalian | 0.993 | 0.939 | 0.398 | 1.1e-57 | |
| TAIR|locus:2166640 | 361 | AT5G38780 [Arabidopsis thalian | 0.878 | 0.800 | 0.417 | 1.4e-55 | |
| TAIR|locus:2033389 | 352 | AT1G66720 [Arabidopsis thalian | 0.984 | 0.920 | 0.395 | 1.4e-55 | |
| TAIR|locus:2082117 | 379 | AT3G44870 "AT3G44870" [Arabido | 0.978 | 0.849 | 0.389 | 2.3e-55 | |
| TAIR|locus:2033409 | 353 | PXMT1 [Arabidopsis thaliana (t | 0.990 | 0.923 | 0.388 | 2.3e-55 | |
| TAIR|locus:2082112 | 348 | FAMT "farnesoic acid carboxyl- | 0.984 | 0.931 | 0.391 | 4.8e-55 | |
| TAIR|locus:2033414 | 353 | AT1G66690 "AT1G66690" [Arabido | 0.990 | 0.923 | 0.376 | 4.9e-53 | |
| TAIR|locus:2200186 | 363 | AT1G68040 [Arabidopsis thalian | 0.784 | 0.710 | 0.418 | 9.5e-50 |
| TAIR|locus:504956193 AT1G15125 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
Identities = 144/350 (41%), Positives = 206/350 (58%)
Query: 1 MVGGDGAHSYASNSAYQ--SIQVY--ILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPN 56
M GGDGA SYA NS+YQ +I+ +LR + + D+ TN ++F IADFGCS+GPN
Sbjct: 1 MNGGDGASSYARNSSYQRGAIEAAEALLRNEINARL-DI-TNHSFSSFTIADFGCSSGPN 58
Query: 57 TFIAVQNIIDSVELKFQHECPSAI--EFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPG 114
T IAV II ++ KF P+ +FQVFFND S DFN LF LP R Y+ AGVPG
Sbjct: 59 TVIAVDIIIQALYHKFTSSLPNTTTPQFQVFFNDVSHTDFNALFALLPPQRPYFVAGVPG 118
Query: 115 SFYSSLFPKSSLHFVHSSYTLHWLSKVP-KVDGVEGSIQTRRFVN------EVMEAYAAQ 167
SFY +LFPK+ L+ +SS L WLS +P ++ R ++ EV +AY++Q
Sbjct: 119 SFYGNLFPKAHLNLAYSSCALCWLSDLPSELTDTSSPAYNRGRIHYTGASAEVAQAYSSQ 178
Query: 168 FNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAA-GSFYNTFGSCLVELTKMGI 226
+ D + FL+ R+QEL GL AL++ VPDG A+ GS ++ GSCL+++ K GI
Sbjct: 179 YKKDIKLFLHARSQELAENGLMALIVPGVPDGFLDCQEASTGSEFDLLGSCLMDMAKEGI 238
Query: 227 LSKEKM-------YNPTPKELEGIIQRNGNFTIERMEKMTN-PKQQVLCSASDLAVAMRA 278
+ +E++ Y TPKELE II+ NG I++ME + + Q + + +RA
Sbjct: 239 IEEEEVNSFNLPIYYTTPKELEDIIRSNGELKIDKMETLGSMDAQDTMPDLESRVLYLRA 298
Query: 279 VYEGLVKEHFGDEFVDKIFNHFATKAEENISIIGQRVQDSMMDLFILLKR 328
V EGLV+ HFG + +D +F+ +A K + I+ + S+M +F LL R
Sbjct: 299 VLEGLVRTHFGHQILDDLFDRYALKLAHSSFILQPQTHKSIM-IFALLSR 347
|
|
| TAIR|locus:2144461 AT5G38100 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
Identities = 142/353 (40%), Positives = 196/353 (55%)
Query: 1 MVGGDGAHSYASNSAYQSIQVYILRYDPRTAV---TDLGTNAVPNTFRIADFGCSTGPNT 57
M G HSY NS+YQ + R + DL ++ TFRIADFGCS GPNT
Sbjct: 10 MSSGHDQHSYIHNSSYQKAAISSAVEKTRRCIFEKLDLQLSSDFGTFRIADFGCSIGPNT 69
Query: 58 FIAVQNIIDSVELKFQHECPS----AIEFQVFFNDHSDNDFNTLFKSLPQS--RSYYAAG 111
F Q+IID+V+ K E +EFQVFFND NDFNTLF++ P S R Y++ G
Sbjct: 70 FHVAQSIIDTVKSKRLEESTENSLVPLEFQVFFNDQPTNDFNTLFRTQPLSPEREYFSVG 129
Query: 112 VPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGV---------EGSIQTRRFVNEVME 162
VPGSFY + P++S+H H+SYT HWLSKVP D V + IQ + EV +
Sbjct: 130 VPGSFYGRVLPRNSIHIGHTSYTTHWLSKVP--DNVCDKKSMAWNKNYIQCNNLLEEVTK 187
Query: 163 AYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELT 222
AY QF D + FL+ RA+ELVPGGL ++ +PDG+ L G +T G CL+++
Sbjct: 188 AYKVQFIKDMEIFLDARAEELVPGGLMIVIGECLPDGVSLYETWQGYVMDTIGDCLMDMA 247
Query: 223 KMGILSKEKM-------YNPTPKELEGIIQRNGNFTIERMEKMTNPKQQVLCSASDLAVA 275
K GI S+EK+ Y P EL+G I++NG+FTIE ME ++P + + +
Sbjct: 248 KSGITSEEKIDLFSLPVYFPQFSELKGEIEKNGSFTIELMETTSHPLEGKPLTNDFITST 307
Query: 276 MRAVYEGLVKEHFGDEFVDKIFNHFATKAEENISIIGQRVQDSMMDLFILLKR 328
RA ++++HFGD VD++F A K + I ++ + I+LKR
Sbjct: 308 FRAFLTTIIEKHFGDGVVDELFYRLAKKLSNHP--IDFEMRKKQVVYCIVLKR 358
|
|
| TAIR|locus:2082157 AT3G44840 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 137/344 (39%), Positives = 192/344 (55%)
Query: 1 MVGGDGAHSYASNSAYQSIQVYILRYDPRTAV-TDLGTNAVPNTFRIADFGCSTGPNTFI 59
M+GG+G SY +S YQ + A+ T L + N IADFGCSTGPNTF
Sbjct: 7 MIGGEGPESYRQHSKYQGGLLEAATEKINEAISTKLNIDLASNLVNIADFGCSTGPNTFR 66
Query: 60 AVQNIIDSVELKFQHECP-SAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYS 118
AVQ IID+VE K+Q E IEFQVFFND S+NDFNTLFK+LP +R Y+A GVP SF+
Sbjct: 67 AVQTIIDAVEHKYQQENNLEEIEFQVFFNDSSNNDFNTLFKTLPPARKYFATGVPASFFG 126
Query: 119 SLFPKSSLHFVHSSYTLHWLSKVPK-VDGVEG-----SIQTRRFVNEVMEAYAAQFNNDF 172
+ P+SSLH SSY+LH+LSK+PK + + I F EV+ AY Q+ D
Sbjct: 127 RVLPRSSLHVGVSSYSLHFLSKIPKKIKDCDSHAWNKDIHCTGFSKEVVRAYLDQYKIDM 186
Query: 173 QTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKM 232
++FL RAQELV GGL L+ +P+G+ + G + GS L ++ K G++ +EK+
Sbjct: 187 ESFLTARAQELVSGGLLFLLGSCLPNGVQMSETLNGMMIDCIGSSLNDIAKQGLIDQEKL 246
Query: 233 -------YNPTPKELEGIIQRNGNFTIERMEKMTNPKQQVLCSASDLAVAMRAVYEGLVK 285
Y E++ II+ N +TIER + ++ +++ L V+ + G+V
Sbjct: 247 DTFKLPIYVAYAGEIKQIIEDNVYYTIERFDIISQENEEIPLDPEFLTVSFKVTVGGIVA 306
Query: 286 EHFGDEFVDKIFNHFATKAEENISIIGQRVQDSMMDLFILLKRI 329
HFG ++K F TK +E + + M I+LKRI
Sbjct: 307 SHFGQHVMEKTFEVVKTKTQEMLPQLANAKPG--MQYLIVLKRI 348
|
|
| TAIR|locus:2166640 AT5G38780 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
Identities = 131/314 (41%), Positives = 186/314 (59%)
Query: 38 NAVPN--TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECP-----SAIEFQVFFNDHS 90
N PN TF IADFGCS GPNTF AVQNIID V+LK E + +EFQV+FND
Sbjct: 49 NMNPNLSTFTIADFGCSIGPNTFHAVQNIIDIVKLKHLKESQEDSRVAPLEFQVYFNDLP 108
Query: 91 DNDFNTLFKSLPQS--RSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVE 148
+NDFNTLF++ P S + Y++ GVPGSFY + P++S+H ++S+T HWLSKVP+ +
Sbjct: 109 NNDFNTLFRTQPPSSKQEYFSVGVPGSFYGRVLPRNSIHIGNTSFTTHWLSKVPEEVCDK 168
Query: 149 GS-------IQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIP 201
S I + EV EAY QF D FL RA+ELVPGGL + +PDG+
Sbjct: 169 NSLAWNKNYIHCNNLIEEVTEAYKVQFEKDMGVFLKARAEELVPGGLMITLGQCLPDGVA 228
Query: 202 LVNNAAGSFYNTFGSCLVELTKMGILSKEK--MYN-----PTPKELEGIIQRNGNFTIER 254
+ +G +T G CL ++ +G+ ++EK M+N P EL+G I++N FTIE
Sbjct: 229 MYETWSGIVKDTIGDCLQDMATLGVTTEEKIEMFNLPVYFPQVSELKGAIEQNIRFTIEM 288
Query: 255 MEKMTNPKQQVLCSASDLAVAMRAVYEGLVKEHFGDEFVDKIFNHFATKAEENISIIGQR 314
ME +++P + V S + + RA+ +++ HFG VD++F FA K E+ I ++
Sbjct: 289 MEIVSHPLEAVQLSNNFITSMYRAILSTVIERHFGGSVVDELFRQFAKKLSEH-PIDFEK 347
Query: 315 VQDSMMDLFILLKR 328
+ M+ I+LKR
Sbjct: 348 CKKQMV-YHIVLKR 360
|
|
| TAIR|locus:2033389 AT1G66720 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
Identities = 137/346 (39%), Positives = 196/346 (56%)
Query: 1 MVGGDGAHSYASNSAYQSIQVYILRYDPRTAV--TDLGTNAVPNTFRIADFGCSTGPNTF 58
MVGG+G SY +S+YQ + + D AV T+L N + N F +ADFGC++GPNTF
Sbjct: 9 MVGGEGPESYKQHSSYQRDLLKAAK-DKINAVISTNLSLNLISNRFSVADFGCASGPNTF 67
Query: 59 IAVQNIIDSVELKFQHEC---PSA-IEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPG 114
+AVQNIID+VE K+ E P IEFQV FND S+NDFNTLF+ LP R YY+A +PG
Sbjct: 68 VAVQNIIDAVEEKYLRETGQNPDDNIEFQVLFNDLSNNDFNTLFQGLPSGRRYYSAAIPG 127
Query: 115 SFYSSLFPKSSLHFVHSSYTLHWLSKVPK-VDGVEGSIQTRR-----FVNEVMEAYAAQF 168
SF+ + PK S+H +Y + SK+PK + + R F N+V +AY QF
Sbjct: 128 SFFDRVLPKHSIHIGVMNYAFQFTSKIPKGISDRNSPLWNRDMHCTGFNNKVKKAYLDQF 187
Query: 169 NNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILS 228
+ D + L+ RA+ELVP GL L+ + DGI + G + G+ L +L + G++
Sbjct: 188 SLDSKNILDARAEELVPEGLMLLLGSCLRDGIKMSETYRGIVLDLIGASLNDLAQQGVIE 247
Query: 229 KEKM--YNPT-----PKELEGIIQRNGNFTIERMEKMTNPKQQVLCSASDLAVAMRAVYE 281
K+K+ +N T EL II+ NG FTIE E + P + L LAV++++ +
Sbjct: 248 KDKVESFNITLYIAEEGELRQIIEENGKFTIEAFEDIIQPNGESL-DPKILAVSLKSAFG 306
Query: 282 GLVKEHFGDEFVDKIFNHFATKAEENISIIGQRVQDSMMDLFILLK 327
G++ HFG E + K F KA + S + Q + +M L +L K
Sbjct: 307 GILSAHFGAEAMMKAFELVEAKAHQEFSRL-QNAKPTMQYLIVLRK 351
|
|
| TAIR|locus:2082117 AT3G44870 "AT3G44870" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
Identities = 132/339 (38%), Positives = 191/339 (56%)
Query: 1 MVGGDGAHSYASNSAYQSIQVYILRYDPRTAV-TDLGTNAVPNTFRIADFGCSTGPNTFI 59
M+GG+G +SY +S YQ V + A+ T L + N IADFGCS+GPNTF
Sbjct: 7 MIGGEGPNSYRDHSKYQGALVEAAKEKINEAISTKLDIDFTSNLVNIADFGCSSGPNTFT 66
Query: 60 AVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSS 119
AVQ +ID+VE K++ E S IEFQVFFND S+NDFNTLFK+LP +R Y+A+GVPGSF+
Sbjct: 67 AVQTLIDAVENKYKKE--SNIEFQVFFNDSSNNDFNTLFKTLPPARLYFASGVPGSFFGR 124
Query: 120 LFPKSSLHFVHSSYTLHWLSKVPK-VDGVEGSIQTRRF-----VNEVMEAYAAQFNNDFQ 173
+ P++SLH S+Y+LH++SK+PK V + + + EV + Y Q+ D
Sbjct: 125 VLPRNSLHLGVSAYSLHFISKIPKEVKDRDSPVWNKDIHCSGSSKEVAKLYLGQYKIDVG 184
Query: 174 TFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKM- 232
+FLN RAQELV GGL L+ P+G+ + G + G+ L E+ G++ ++K+
Sbjct: 185 SFLNARAQELVSGGLLLLLGSCRPNGVQMFETVEGMMIDFIGASLNEIANQGLIDQQKLD 244
Query: 233 ------YNPTPKELEGIIQRNGNFTIERMEKMTNPKQQVLCSASDLAVAMRAVYEGLVKE 286
Y P EL+ II+ NG FTIE E + + K + L V+ + G V
Sbjct: 245 TFKLPIYAPQADELKQIIEDNGCFTIEVFENIIHAKGEYPLDPEFLTVSFKVTVGGSVAS 304
Query: 287 HFGDEFVDKIFNHFATKAEENISIIGQRVQDSMMDLFIL 325
FG + ++K F K +E + I + + M L +L
Sbjct: 305 LFGQDGMEKTFELVKEKTQEMLPQIA-KAKPGMQYLIVL 342
|
|
| TAIR|locus:2033409 PXMT1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
Identities = 134/345 (38%), Positives = 190/345 (55%)
Query: 1 MVGGDGAHSYASNSAYQSIQVYILRYDPRTAVT-DLGTNAVPNTFRIADFGCSTGPNTFI 59
M+GGDG SY S+YQ + + A++ +L + + N F +ADFGC++GPNTF+
Sbjct: 9 MIGGDGPESYNQQSSYQRALLEATKDKMTKAISANLDLDLISNRFIVADFGCASGPNTFV 68
Query: 60 AVQNIIDSVELKFQHEC---PSA-IEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGS 115
AVQNIID+VE K++ E P+ IEFQV FND S NDFNTLF++LP R Y++AGVPGS
Sbjct: 69 AVQNIIDAVEEKYRRETGQNPADNIEFQVLFNDFSLNDFNTLFQTLPPGRRYFSAGVPGS 128
Query: 116 FYSSLFPKSSLHFVHSSYTLHWLSKVPK--VDGVEG----SIQTRRFVNEVMEAYAAQFN 169
F+ + PK S H SY H+ SK+PK +D +Q F V +AY Q++
Sbjct: 129 FFERVLPKESFHIGVMSYAFHFTSKIPKGIMDRDSPLWNKDMQCTGFNPAVKKAYLDQYS 188
Query: 170 NDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSK 229
D + L+ RA+ELVPGGL L+ + DG+ + G+ + G L +L K G+ +
Sbjct: 189 IDTKILLDARAEELVPGGLMLLLGSCLRDGVKMSETPKGTVMDFIGESLSDLAKQGVTEQ 248
Query: 230 EKM-------YNPTPKELEGIIQRNGNFTIERMEKMTNPKQQVLCSASDLAVAMRAVYEG 282
EK+ Y E+ II+ NG FTIE E + + K + LA++ +A Y
Sbjct: 249 EKVDTFRTSIYFAEQGEIRQIIEENGKFTIEAFEDIIHAKNEFPFDPKTLAISFKAFYGA 308
Query: 283 LVKEHFGDEFVDKIFNHFATKAEENISIIGQRVQDSMMDLFILLK 327
+ HFG E + K F KA E IS + + M L +L K
Sbjct: 309 FISAHFGVEVMRKAFELVEVKAREQISRL-HNSKPGMQYLIVLRK 352
|
|
| TAIR|locus:2082112 FAMT "farnesoic acid carboxyl-O-methyltransferase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
Identities = 133/340 (39%), Positives = 190/340 (55%)
Query: 1 MVGGDGAHSYASNSAYQSIQVYILRYDPRTAV-TDLGTNAVPNTFRIADFGCSTGPNTFI 59
M+GG+G +SY +S YQ V + A+ T L + N IADFGCS+GPNTF
Sbjct: 7 MIGGEGPNSYREHSKYQGALVIAAKEKINEAISTKLDIDFTSNLVNIADFGCSSGPNTFT 66
Query: 60 AVQNIIDSVELKFQHECP-SAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYS 118
AVQ +ID+VE K++ E IEFQVFFND S+NDFNTLFK+LP +R Y+A+GVPGSF+
Sbjct: 67 AVQTLIDAVENKYKKESNIEGIEFQVFFNDSSNNDFNTLFKTLPPARLYFASGVPGSFFG 126
Query: 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVN------EVMEAYAAQFNNDF 172
+ PK+SLH SSY+LH++SKVPK S+ + ++ EV++ Y Q+ D
Sbjct: 127 RVLPKNSLHVGVSSYSLHFVSKVPKEIKDRDSLVWNKDIHCSGSSKEVVKLYLGQYKIDV 186
Query: 173 QTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKM 232
+FL RAQELV GGL L+ P G+ + G + GS L E+ G++ ++K+
Sbjct: 187 GSFLTARAQELVSGGLLLLLGSCRPTGVQMFETVEGMMIDFIGSSLNEIANQGLIDQQKL 246
Query: 233 -------YNPTPKELEGIIQRNGNFTIERMEKMTNPKQQVLCSASDLAVAMRAVYEGLVK 285
Y P EL+ II+ N FTIE EK+++ K + L A + G V
Sbjct: 247 DTFKLPIYAPNVDELKQIIEDNKCFTIEAFEKISHAKGEYPLDPEYLTSAFKVTVGGSVA 306
Query: 286 EHFGDEFVDKIFNHFATKAEENISIIGQRVQDSMMDLFIL 325
FG + ++K + K +E + I + + M L +L
Sbjct: 307 SLFGQDGMEKTYELVKEKTQEMLPQIA-KAKPGMQYLIVL 345
|
|
| TAIR|locus:2033414 AT1G66690 "AT1G66690" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
Identities = 130/345 (37%), Positives = 189/345 (54%)
Query: 1 MVGGDGAHSYASNSAYQSIQVYILRYDPRTAVT-DLGTNAVPNTFRIADFGCSTGPNTFI 59
M+GG G SY S+YQ + + A++ +L + + N F +ADFGC++GPNTF+
Sbjct: 9 MIGGYGPESYNQQSSYQRALLEAAKDKMTEAISANLDLDLISNRFIVADFGCASGPNTFV 68
Query: 60 AVQNIIDSVELKFQHEC---PSA-IEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGS 115
AVQNIID+VE K+ E P IEFQV FND NDFNTLF++LP R Y++AGVPGS
Sbjct: 69 AVQNIIDAVEEKYLRETGQNPEDNIEFQVLFNDLRINDFNTLFQTLPPGRRYFSAGVPGS 128
Query: 116 FYSSLFPKSSLHFVHSSYTLHWLSKVPK--VDGVEG----SIQTRRFVNEVMEAYAAQFN 169
F++ + PK S H SY + SK+PK +D +Q F V +AY Q++
Sbjct: 129 FFNRVLPKQSFHIAVMSYAFLFTSKIPKGIMDRDSPLWNKDMQCTGFNPAVKKAYLEQYS 188
Query: 170 NDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSK 229
D + L+ RA+EL+PGGL L+ + DG+ + G+ + G L +L + G+ +
Sbjct: 189 IDTKNLLDARAEELMPGGLMLLLGSCMRDGVKMSETLKGTVMDFIGESLNDLAQKGVTEQ 248
Query: 230 EKM-------YNPTPKELEGIIQRNGNFTIERMEKMTNPKQQVLCSASDLAVAMRAVYEG 282
EK+ Y E+ II+ NG FTIE E + + K + LA++ +A+Y
Sbjct: 249 EKVDTFKTSIYFAEQGEIRQIIEENGKFTIEAFEDIIHSKNEFPLDPKTLAISFKALYGA 308
Query: 283 LVKEHFGDEFVDKIFNHFATKAEENISIIGQRVQDSMMDLFILLK 327
+ HFG E + K F KA E IS + +V+ M L +L K
Sbjct: 309 FISAHFGIEVMRKAFELVEVKAREQISRL-HKVKPGMQYLIVLRK 352
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| TAIR|locus:2200186 AT1G68040 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 518 (187.4 bits), Expect = 9.5e-50, P = 9.5e-50
Identities = 116/277 (41%), Positives = 156/277 (56%)
Query: 1 MVGGDGAHSYASNSAYQSIQVYILRYD-PRTAVTDLGTNAV----PNTFRIADFGCSTGP 55
M GGDG +SY+ NS Q +L+ + + L + NTFRIAD GC+TGP
Sbjct: 13 MSGGDGPNSYSKNSHLQRKTTSLLKEKIDKLVLEKLNAKTLISSDSNTFRIADLGCATGP 72
Query: 56 NTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGS 115
NTF V NII S+E + S EF VFFND NDFNTLF SLPQ RSY A GVPGS
Sbjct: 73 NTFFLVDNIIKSIETSLRKSNSSKPEFLVFFNDLPQNDFNTLFTSLPQDRSYLAVGVPGS 132
Query: 116 FYSSLFPKSSLHFVHSSYTLHWLSKVPK--VDGV-----EGSIQTRRFVNEVMEAYAAQF 168
FY + P+SS+H V + HWLS VPK +D +G + +EV++AY QF
Sbjct: 133 FYGRVLPQSSVHIVVTMGATHWLSSVPKEVLDKSSKAWNKGKVHYSNAADEVVKAYRDQF 192
Query: 169 NNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILS 228
D + FL RA E+V GGL + M +P G+P N A Y + L ++ G++S
Sbjct: 193 GRDMEKFLEARATEIVSGGLLVVGMCGIPKGMPFSNLADSIMYTSMADVLTQMHSEGLIS 252
Query: 229 KEKM-------YNPTPKELEGIIQRNGNFTIERMEKM 258
+E++ Y+ TP+E+ ++ +NG FT+E ME M
Sbjct: 253 EEQVDTFNIPIYSATPEEVTVLVVKNGCFTVESMELM 289
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 2.1.1.141 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.2047.2.1 | hypothetical protein (351 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 329 | |||
| pfam03492 | 331 | pfam03492, Methyltransf_7, SAM dependent carboxyl | 1e-114 | |
| PLN02668 | 386 | PLN02668, PLN02668, indole-3-acetate carboxyl meth | 2e-50 |
| >gnl|CDD|217591 pfam03492, Methyltransf_7, SAM dependent carboxyl methyltransferase | Back alignment and domain information |
|---|
Score = 332 bits (854), Expect = e-114
Identities = 142/327 (43%), Positives = 194/327 (59%), Gaps = 36/327 (11%)
Query: 35 LGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSA-IEFQVFFNDHSDND 93
L N PN+ +IAD GCS+GPNTF+AV NIID+VE K+Q E EFQVFFND ND
Sbjct: 9 LLRNLFPNSIKIADLGCSSGPNTFLAVSNIIDTVEKKYQKENILEPPEFQVFFNDLPSND 68
Query: 94 FNTLFKSLPQS----RSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVE- 148
FNTLFK LP RSY+ +GVPGSFY LFP++SLHFVHSSY+LHWLS+VPK G+E
Sbjct: 69 FNTLFKLLPPFQKKKRSYFVSGVPGSFYGRLFPRNSLHFVHSSYSLHWLSQVPK--GLED 126
Query: 149 --------GSIQTRRFVN-EVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDG 199
G+I EV +AY QF DF FL RA+ELV GGL L P
Sbjct: 127 KESPAWNKGNIYISGASPEEVYKAYLDQFKKDFSLFLRARAEELVSGGLMVLTFLGRPSV 186
Query: 200 IPLVNNAAGSFYNTFGSCLVELTKMGILSKEKM-------YNPTPKELEGIIQRNGNFTI 252
P G F++ G L +L G++ +EK+ Y P+P+E++ II++ G+FTI
Sbjct: 187 DPS-ETECGIFWDLLGDALNDLVSEGLIEEEKLDSFNIPIYAPSPEEVKEIIEKEGSFTI 245
Query: 253 ERMEKMTNPKQQVLCSASD----------LAVAMRAVYEGLVKEHFGDEFVDKIFNHFAT 302
ER+E + +P +V SD +A ++RAV E ++ HFG++ +DK+F+ +A
Sbjct: 246 ERLEIIKHPNGEVPWDESDSEDKVEDGRFVASSVRAVVEPMLVAHFGEDIMDKLFDRYAK 305
Query: 303 KAEENISIIGQRVQDSMMDLFILLKRI 329
K E++S Q + ++ + + L R
Sbjct: 306 KLSEHLSKELQNAKKTIN-VVVSLSRK 331
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This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesised through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyzes the second step to produce theobromine. Length = 331 |
| >gnl|CDD|178273 PLN02668, PLN02668, indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Score = 171 bits (435), Expect = 2e-50
Identities = 107/343 (31%), Positives = 164/343 (47%), Gaps = 39/343 (11%)
Query: 1 MVGGDGAHSYASNSAYQSIQVYILRYDPRTAVTDLGTNAVPNT-FRIADFGCSTGPNTFI 59
M GG G SYA+NS Q++ + + + ++ N+ P F D GCS+G NT
Sbjct: 21 MKGGKGEGSYANNSQAQALHARSMLHLLEETLDNVHLNSSPEVPFTAVDLGCSSGSNTIH 80
Query: 60 AVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---------------- 103
+ I+ + +++ EF FF+D NDFNTLF+ LP
Sbjct: 81 IIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASG 140
Query: 104 SRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSI---QTRRFVNEV 160
RSY+AAGVPGSFY LFP S+ HS+++LHWLS+VP+ + S + R F++
Sbjct: 141 HRSYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGA 200
Query: 161 ME----AYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNT-FG 215
E AY QF D FL RAQE+ GG LV P AG + T F
Sbjct: 201 SESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQ 260
Query: 216 SCLVELTKMGILSKEK-------MYNPTPKELEGIIQRNGNFTIERMEKMTNPKQQVLCS 268
+L + G+++ EK +Y P+ ++ + +++ NG+F I+++E V+
Sbjct: 261 DAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFAIDKLEVFKGGSPLVVNE 320
Query: 269 ASD-------LAVAMRAVYEGLVKEHFGDEFVDKIFNHFATKA 304
D +A + R+V LV H G+E +++F +A
Sbjct: 321 PDDAAEVGRAMANSCRSVAGVLVDAHIGEELSNELFLRVERRA 363
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Length = 386 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 329 | |||
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 100.0 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 100.0 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.78 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.7 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.68 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.67 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.45 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.44 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.39 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.38 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.33 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.33 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.32 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.31 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.29 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.26 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.23 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.18 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.14 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.13 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.12 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.12 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.12 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.09 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.09 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.08 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 99.07 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.07 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.05 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.03 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.02 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.0 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 98.99 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 98.93 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 98.89 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.88 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 98.87 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 98.86 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 98.84 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 98.82 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 98.79 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 98.78 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 98.77 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 98.75 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 98.74 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 98.72 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.72 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 98.67 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 98.66 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 98.64 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 98.64 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 98.62 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 98.62 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 98.57 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 98.57 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 98.56 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 98.56 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.53 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 98.52 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 98.51 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 98.48 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 98.44 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 98.43 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 98.4 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 98.4 | |
| PRK04266 | 226 | fibrillarin; Provisional | 98.37 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 98.35 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 98.32 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.31 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 98.31 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 98.29 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 98.29 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 98.29 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 98.26 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.25 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 98.24 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 98.22 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.22 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 98.21 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 98.21 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 98.2 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.2 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.19 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.16 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.15 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.12 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 98.12 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 98.11 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.08 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 98.08 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.05 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.02 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.01 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 97.96 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 97.95 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.95 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 97.9 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 97.89 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 97.88 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 97.88 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 97.87 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 97.86 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 97.85 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 97.83 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 97.78 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 97.77 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 97.76 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 97.74 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 97.68 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 97.68 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 97.66 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 97.63 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 97.62 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 97.6 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 97.58 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 97.57 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 97.56 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 97.56 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 97.56 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 97.48 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 97.45 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.42 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.38 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 97.37 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 97.36 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 97.33 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 97.3 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 97.26 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 97.25 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 97.19 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 97.18 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 97.17 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 97.16 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 97.08 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 97.08 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.06 | |
| PLN02366 | 308 | spermidine synthase | 97.04 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 97.02 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 96.97 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 96.94 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 96.87 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 96.83 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 96.77 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 96.75 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 96.73 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 96.67 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 96.67 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 96.61 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 96.53 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 96.52 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 96.39 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 96.38 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 96.38 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 96.35 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 96.34 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 96.32 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 96.27 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 96.17 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 96.15 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 96.11 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 96.0 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 95.94 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 95.83 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 95.8 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 95.76 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 95.57 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 95.49 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 95.48 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 95.34 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 95.32 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 95.31 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 95.14 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 94.94 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 94.92 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 94.8 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 94.76 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 94.75 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 94.72 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 94.56 | |
| PLN02476 | 278 | O-methyltransferase | 94.45 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 94.19 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 94.18 | |
| PLN02823 | 336 | spermine synthase | 93.83 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 93.59 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 93.56 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 93.24 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 93.21 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 93.07 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 92.38 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 92.09 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 91.72 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 91.04 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 90.93 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 90.22 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 89.82 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 89.29 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 87.86 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 87.16 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 87.08 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 86.69 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 84.65 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 83.88 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 83.82 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 83.23 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 81.29 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 80.86 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 80.82 |
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-87 Score=653.27 Aligned_cols=325 Identities=32% Similarity=0.563 Sum_probs=291.5
Q ss_pred CCCCCCCcchHHHhHHHHHHHHHhHhhHHHHHhhcccCCCC-CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCC
Q 037735 1 MVGGDGAHSYASNSAYQSIQVYILRYDPRTAVTDLGTNAVP-NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSA 79 (329)
Q Consensus 1 m~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~-~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~ 79 (329)
|+||+|++||++||.+|+.++..++|+|+++|+++.....+ ++++|||||||+|+||+.+++.||++|+++|.+.+.+.
T Consensus 21 M~gG~g~~SYa~nS~~Q~~~~~~~k~~leeai~~~~~~~~p~~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~ 100 (386)
T PLN02668 21 MKGGKGEGSYANNSQAQALHARSMLHLLEETLDNVHLNSSPEVPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDP 100 (386)
T ss_pred cCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCC
Confidence 99999999999999999999999999999999877432113 68999999999999999999999999999998876678
Q ss_pred ccceEEecCCCcchHHhhhhcCCCC----------------cceeeeccccccccccCCCCceeEEEeccceecccCCCC
Q 037735 80 IEFQVFFNDHSDNDFNTLFKSLPQS----------------RSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPK 143 (329)
Q Consensus 80 pe~~v~~nDLp~ndfn~lf~~l~~~----------------~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~ 143 (329)
||+|||+||||.||||++|++|++. ++||++|||||||+||||++|+||+||++||||||++|+
T Consensus 101 pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~ 180 (386)
T PLN02668 101 PEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRSYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPE 180 (386)
T ss_pred CcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCceEEEecCccccccccCCCceEEEEeeccceecccCch
Confidence 8999999999999999999999742 249999999999999999999999999999999999998
Q ss_pred C--C-----CCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCCcccCCcccchHHH-HH
Q 037735 144 V--D-----GVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNT-FG 215 (329)
Q Consensus 144 ~--~-----~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~-l~ 215 (329)
. | ||||+||+++++|+|.+||++||++||..||++||+||+|||+|+++++||++.++......+.+|+. +.
T Consensus 181 ~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~ 260 (386)
T PLN02668 181 SVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQ 260 (386)
T ss_pred hhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHH
Confidence 7 2 79999999999999999999999999999999999999999999999999987665544335667777 99
Q ss_pred HHHHHHHhcCCcCCCc-------ccCCCHHHHHHHHHhCCceEEeEEEEeecCcc---ccc----ccHHHHhhhHhhhhh
Q 037735 216 SCLVELTKMGILSKEK-------MYNPTPKELEGIIQRNGNFTIERMEKMTNPKQ---QVL----CSASDLAVAMRAVYE 281 (329)
Q Consensus 216 ~a~~~l~~eG~i~~~~-------~y~ps~eE~~~~i~~~g~f~i~~~e~~~~~~~---~~~----~~~~~~~~~iRa~~e 281 (329)
++|++||.||+|++|+ +|+||++|++++|+++|+|+|+++|.++..|. +.+ ..+..+++++||+.|
T Consensus 261 ~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~I~~le~~~~~~~~~~~~~~d~~~~g~~~a~~~RA~~E 340 (386)
T PLN02668 261 DAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFAIDKLEVFKGGSPLVVNEPDDAAEVGRAMANSCRSVAG 340 (386)
T ss_pred HHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEEeeeeEEeeccCcccccCcccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 99999999999999999999999999875432 111 135679999999999
Q ss_pred hHHhhhcChHHHHHHHHHHHHHHHHhhhhhhhhcCCCceEEEEEEE
Q 037735 282 GLVKEHFGDEFVDKIFNHFATKAEENISIIGQRVQDSMMDLFILLK 327 (329)
Q Consensus 282 ~~~~~~~g~~~~d~~f~ry~~~~~~~~~~~~~~~~~~~~~~~~~L~ 327 (329)
|++.+|||++++|+||+||+++++++.+.. .++.+..+++++|.
T Consensus 341 ~ll~~HFG~~i~D~lF~r~~~~v~~~~~~~--~~~~~~~~~~~sL~ 384 (386)
T PLN02668 341 VLVDAHIGEELSNELFLRVERRATSHAKEL--LEKLQFFHIVASLS 384 (386)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHhh--cccCceEEEEEEEe
Confidence 999999999999999999999999988863 35667788888875
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-82 Score=608.06 Aligned_cols=300 Identities=42% Similarity=0.741 Sum_probs=248.3
Q ss_pred HHHHHhhccc-CCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcC-CCCccceEEecCCCcchHHhhhhcCCCC-
Q 037735 28 PRTAVTDLGT-NAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHEC-PSAIEFQVFFNDHSDNDFNTLFKSLPQS- 104 (329)
Q Consensus 28 l~~ai~~i~~-~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~-~~~pe~~v~~nDLp~ndfn~lf~~l~~~- 104 (329)
|++||.++.. ...+++++|||||||+|+||+.+++.||++|+++|.+.+ .++||+||||||||.||||+||++|+..
T Consensus 1 ~~~ai~~~~~~~~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~ 80 (334)
T PF03492_consen 1 LEEAIKELYNSSNNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQ 80 (334)
T ss_dssp -HHHHHHHHHSTTTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHH
T ss_pred ChHHHHHHHhcCCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhh
Confidence 3566666543 236789999999999999999999999999999998776 6789999999999999999999999865
Q ss_pred ------cceeeeccccccccccCCCCceeEEEeccceecccCCCCC--C-----CCccceeec-CCcHHHHHHHHHHHhh
Q 037735 105 ------RSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKV--D-----GVEGSIQTR-RFVNEVMEAYAAQFNN 170 (329)
Q Consensus 105 ------~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~--~-----~n~g~i~~~-~~~~~~~~ay~~q~~~ 170 (329)
++||++|||||||+||||++|+||+||++||||||++|+. + ||||+||++ +++++|.+||++||++
T Consensus 81 ~~~~~~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~ 160 (334)
T PF03492_consen 81 QSLKKFRNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQK 160 (334)
T ss_dssp HHHHHTTSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHH
T ss_pred hccCCCceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999988 4 899999999 7899999999999999
Q ss_pred cHHHHHHHHHHHhccCceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCc-------ccCCCHHHHHHH
Q 037735 171 DFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEK-------MYNPTPKELEGI 243 (329)
Q Consensus 171 D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~-------~y~ps~eE~~~~ 243 (329)
||.+||++||+||+|||+|+++++|+++..+. +.+.+.+|++|+++|++||.||+|++++ +|+||.+|++++
T Consensus 161 D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~-~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~ 239 (334)
T PF03492_consen 161 DFSSFLKARAEELVPGGRMVLTFLGRDEEDPS-STGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAI 239 (334)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEEE-STSSTT-STTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHH
T ss_pred HHHHHHHHhhheeccCcEEEEEEeeccccccc-cCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHH
Confidence 99999999999999999999999999985543 3456689999999999999999999999 999999999999
Q ss_pred HHhCCceEEeEEEEeecC-cccc---------cccHHHHhhhHhhhhhhHHhhhcChHHHHHHHHHHHHHHHHhhhhhhh
Q 037735 244 IQRNGNFTIERMEKMTNP-KQQV---------LCSASDLAVAMRAVYEGLVKEHFGDEFVDKIFNHFATKAEENISIIGQ 313 (329)
Q Consensus 244 i~~~g~f~i~~~e~~~~~-~~~~---------~~~~~~~~~~iRa~~e~~~~~~~g~~~~d~~f~ry~~~~~~~~~~~~~ 313 (329)
|+++|+|+|+++|.+... |... ..+++.+++++||++||++++|||++++|+||+||+++++++++.. .
T Consensus 240 I~~~gsF~I~~le~~~~~~~~~~~~~~~~~d~~~~~~~~~~~iRA~~e~~l~~hfG~ei~D~LF~r~~~~v~~~~~~~-~ 318 (334)
T PF03492_consen 240 IEEEGSFEIEKLELFEQPWWSVPDDESWKEDAKEYARNVANYIRAVFEPLLKAHFGEEIMDELFERYAKKVAEHLEKE-K 318 (334)
T ss_dssp HHHHTSEEEEEEEEEEEETCCTCTTT-STTTHHCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHT-H
T ss_pred HhcCCCEEEEEEEEEeecccccchhhhcccchhhhHHHHHHhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh-h
Confidence 999999999999988633 2211 1257899999999999999999999999999999999999999865 3
Q ss_pred hcCCCceEEEEEEEeC
Q 037735 314 RVQDSMMDLFILLKRI 329 (329)
Q Consensus 314 ~~~~~~~~~~~~L~r~ 329 (329)
+..++.++++++|+||
T Consensus 319 ~~~~~~~~i~~~L~Rk 334 (334)
T PF03492_consen 319 SRNMKFVNIVVSLTRK 334 (334)
T ss_dssp TT-BEEEEEEEEEEE-
T ss_pred ccCCCcEEEEEEEeeC
Confidence 3457899999999997
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.7e-18 Score=156.21 Aligned_cols=210 Identities=13% Similarity=0.121 Sum_probs=150.4
Q ss_pred CcchHHHhHHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEe
Q 037735 7 AHSYASNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFF 86 (329)
Q Consensus 7 ~~sY~~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~ 86 (329)
+.+|++++.+|+.++..+...+. ..+..+|+|+|||+|.+|..+.. . ..+++.
T Consensus 17 a~~Y~~~~~~q~~~a~~l~~~l~----------~~~~~~vLDiGcG~G~~~~~l~~--------~---------~~~v~~ 69 (251)
T PRK10258 17 AAHYEQHAELQRQSADALLAMLP----------QRKFTHVLDAGCGPGWMSRYWRE--------R---------GSQVTA 69 (251)
T ss_pred HHhHhHHHHHHHHHHHHHHHhcC----------ccCCCeEEEeeCCCCHHHHHHHH--------c---------CCeEEE
Confidence 45899999999999999877665 13457899999999998876642 1 148999
Q ss_pred cCCCcchHHhhhhcCCCCcceeeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHH
Q 037735 87 NDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAA 166 (329)
Q Consensus 87 nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~ 166 (329)
.|+...+....-+..+. ..|+.+ ++..-.+|++++|+|+|+.++||+.++
T Consensus 70 ~D~s~~~l~~a~~~~~~--~~~~~~---d~~~~~~~~~~fD~V~s~~~l~~~~d~------------------------- 119 (251)
T PRK10258 70 LDLSPPMLAQARQKDAA--DHYLAG---DIESLPLATATFDLAWSNLAVQWCGNL------------------------- 119 (251)
T ss_pred EECCHHHHHHHHhhCCC--CCEEEc---CcccCcCCCCcEEEEEECchhhhcCCH-------------------------
Confidence 99988776655444332 234444 564445889999999999999997654
Q ss_pred HHhhcHHHHHHHHHHHhccCceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHh
Q 037735 167 QFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQR 246 (329)
Q Consensus 167 q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~ 246 (329)
..+|....+.|+|||.+++++++.++. ..+.++|..+-..+ ...-+++.+|+.+.+..
T Consensus 120 ------~~~l~~~~~~Lk~gG~l~~~~~~~~~~------------~el~~~~~~~~~~~----~~~~~~~~~~l~~~l~~ 177 (251)
T PRK10258 120 ------STALRELYRVVRPGGVVAFTTLVQGSL------------PELHQAWQAVDERP----HANRFLPPDAIEQALNG 177 (251)
T ss_pred ------HHHHHHHHHHcCCCeEEEEEeCCCCch------------HHHHHHHHHhccCC----ccccCCCHHHHHHHHHh
Confidence 377999999999999999999997752 34566666542111 01556799999999986
Q ss_pred CCceEEeEEEEeecCcccccccHHHHhhhHhhhhhhHH-----hhhcChHHHHHHHHHHH
Q 037735 247 NGNFTIERMEKMTNPKQQVLCSASDLAVAMRAVYEGLV-----KEHFGDEFVDKIFNHFA 301 (329)
Q Consensus 247 ~g~f~i~~~e~~~~~~~~~~~~~~~~~~~iRa~~e~~~-----~~~~g~~~~d~~f~ry~ 301 (329)
.+ +++ ..+.+.. .|+ ++..+.+++|.++.... ...+++..+.++.+.|.
T Consensus 178 ~~-~~~-~~~~~~~-~f~---~~~~~l~~lk~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (251)
T PRK10258 178 WR-YQH-HIQPITL-WFD---DALSAMRSLKGIGATHLHEGRDPRILTRSQLQRLQLAWP 231 (251)
T ss_pred CC-cee-eeeEEEE-ECC---CHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHHHhcc
Confidence 53 554 3333333 244 48999999999887543 34577777777766663
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-15 Score=138.23 Aligned_cols=217 Identities=16% Similarity=0.200 Sum_probs=157.1
Q ss_pred CCcchHHHhHHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEE
Q 037735 6 GAHSYASNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVF 85 (329)
Q Consensus 6 g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~ 85 (329)
...+|++.+..|+.+...+.+.+.... ..++.+|+|+|||+|.++..+.. . .|..+++
T Consensus 5 ~~~~y~~~~~~q~~~~~~l~~~~~~~~-------~~~~~~vLDlG~G~G~~~~~l~~--------~-------~~~~~~~ 62 (240)
T TIGR02072 5 AAKTYDRHAKIQREMAKRLLALLKEKG-------IFIPASVLDIGCGTGYLTRALLK--------R-------FPQAEFI 62 (240)
T ss_pred hhhchhHHHHHHHHHHHHHHHHhhhhc-------cCCCCeEEEECCCccHHHHHHHH--------h-------CCCCcEE
Confidence 457899999999999999888887431 13457899999999998887764 2 2345799
Q ss_pred ecCCCcchHHhhhhcCCCCcceeeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHH
Q 037735 86 FNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYA 165 (329)
Q Consensus 86 ~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~ 165 (329)
..|+..++.+...+.+++ +..|+.+ ++.+..+|++++|+++++.++||+.+.
T Consensus 63 ~~D~~~~~~~~~~~~~~~-~~~~~~~---d~~~~~~~~~~fD~vi~~~~l~~~~~~------------------------ 114 (240)
T TIGR02072 63 ALDISAGMLAQAKTKLSE-NVQFICG---DAEKLPLEDSSFDLIVSNLALQWCDDL------------------------ 114 (240)
T ss_pred EEeChHHHHHHHHHhcCC-CCeEEec---chhhCCCCCCceeEEEEhhhhhhccCH------------------------
Confidence 999988777666655543 2234443 565666889999999999999997543
Q ss_pred HHHhhcHHHHHHHHHHHhccCceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHH
Q 037735 166 AQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQ 245 (329)
Q Consensus 166 ~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~ 245 (329)
..+|....+.|+|||.++++.++.++. ..+..++.. .+ ..+++.+++.+++.
T Consensus 115 -------~~~l~~~~~~L~~~G~l~~~~~~~~~~------------~~~~~~~~~---~~------~~~~~~~~~~~~l~ 166 (240)
T TIGR02072 115 -------SQALSELARVLKPGGLLAFSTFGPGTL------------HELRQSFGQ---HG------LRYLSLDELKALLK 166 (240)
T ss_pred -------HHHHHHHHHHcCCCcEEEEEeCCccCH------------HHHHHHHHH---hc------cCCCCHHHHHHHHH
Confidence 378999999999999999998776542 123333322 23 56789999999998
Q ss_pred hCCceEEeEEEEeecC-cccccccHHHHhhhHhhhhhhHH-hhhcChHHHHHHHHHHHHHHH
Q 037735 246 RNGNFTIERMEKMTNP-KQQVLCSASDLAVAMRAVYEGLV-KEHFGDEFVDKIFNHFATKAE 305 (329)
Q Consensus 246 ~~g~f~i~~~e~~~~~-~~~~~~~~~~~~~~iRa~~e~~~-~~~~g~~~~d~~f~ry~~~~~ 305 (329)
.. |....++..... .+. ++..+.+++|..+.... ...++++...++.+.|.+.+.
T Consensus 167 ~~--f~~~~~~~~~~~~~~~---~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (240)
T TIGR02072 167 NS--FELLTLEEELITLSFD---DPLDVLRHLKKTGANGLSSGRTSRKQLKAFLERYEQEFQ 223 (240)
T ss_pred Hh--cCCcEEEEEEEEEeCC---CHHHHHHHHHHhccCcCCCCCCCHHHHHHHHHHHHHhhc
Confidence 76 877666543222 233 37888999999766433 344788888888888877664
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.3e-15 Score=138.62 Aligned_cols=247 Identities=15% Similarity=0.163 Sum_probs=157.7
Q ss_pred CcchHHHhHHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEe
Q 037735 7 AHSYASNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFF 86 (329)
Q Consensus 7 ~~sY~~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~ 86 (329)
+..|++++..|.+....++..+. ..+..+|+|+|||+|..+..+.+ + .|..+|+.
T Consensus 6 ~~~Y~~~~~~~~~~~~~ll~~~~----------~~~~~~vLDiGcG~G~~~~~la~--------~-------~~~~~v~g 60 (258)
T PRK01683 6 PSLYLKFEDERTRPARDLLARVP----------LENPRYVVDLGCGPGNSTELLVE--------R-------WPAARITG 60 (258)
T ss_pred HHHHHHHHHHhhcHHHHHHhhCC----------CcCCCEEEEEcccCCHHHHHHHH--------H-------CCCCEEEE
Confidence 45799999999888777665443 23457999999999999987764 2 23468999
Q ss_pred cCCCcchHHhhhhcCCCCcceeeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHH
Q 037735 87 NDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAA 166 (329)
Q Consensus 87 nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~ 166 (329)
.|+...+....-+.++. .-|..+ ++ ..+.|++++|+++|+.++||+.+.
T Consensus 61 vD~s~~~i~~a~~~~~~--~~~~~~---d~-~~~~~~~~fD~v~~~~~l~~~~d~------------------------- 109 (258)
T PRK01683 61 IDSSPAMLAEARSRLPD--CQFVEA---DI-ASWQPPQALDLIFANASLQWLPDH------------------------- 109 (258)
T ss_pred EECCHHHHHHHHHhCCC--CeEEEC---ch-hccCCCCCccEEEEccChhhCCCH-------------------------
Confidence 99988776665444432 223433 45 345677899999999999997543
Q ss_pred HHhhcHHHHHHHHHHHhccCceEEEEecccCCCCcccCCcccchHHHHH--HHHHHHHhcCCcCCCcccCCCHHHHHHHH
Q 037735 167 QFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFG--SCLVELTKMGILSKEKMYNPTPKELEGII 244 (329)
Q Consensus 167 q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~--~a~~~l~~eG~i~~~~~y~ps~eE~~~~i 244 (329)
..+|+...+.|+|||.+++.+.+... ... . ..+..+. .-|.......- ....++++++++...+
T Consensus 110 ------~~~l~~~~~~LkpgG~~~~~~~~~~~--~~~---~-~~~~~~~~~~~w~~~~~~~~--~~~~~~~~~~~~~~~l 175 (258)
T PRK01683 110 ------LELFPRLVSLLAPGGVLAVQMPDNLD--EPS---H-VLMREVAENGPWEQNLPDRG--ARRAPLPPPHAYYDAL 175 (258)
T ss_pred ------HHHHHHHHHhcCCCcEEEEECCCCCC--CHH---H-HHHHHHHccCchHHHhcccc--ccCcCCCCHHHHHHHH
Confidence 37799999999999999998643211 110 0 0111110 01222211110 0014668999999999
Q ss_pred HhCCceEEeEEEEeecCcccccccHHHHhhhHhhhhhhHHhhhcChHHHHHHHHHHHHHHHHhhh--hhhhhcCCCceEE
Q 037735 245 QRNGNFTIERMEKMTNPKQQVLCSASDLAVAMRAVYEGLVKEHFGDEFVDKIFNHFATKAEENIS--IIGQRVQDSMMDL 322 (329)
Q Consensus 245 ~~~g~f~i~~~e~~~~~~~~~~~~~~~~~~~iRa~~e~~~~~~~g~~~~d~~f~ry~~~~~~~~~--~~~~~~~~~~~~~ 322 (329)
...| +.+...+......+. +++.+.+++++++-..+-.+++++..++|.+.|.+.+.+... .-|. -...+.-+
T Consensus 176 ~~~g-~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~f~~~~~~~~~~~~~~~~~g~-~~~~~~~~ 250 (258)
T PRK01683 176 APAA-CRVDIWHTTYYHPMP---SAQAIVEWVKGTGLRPFLDPLTESEQAAFLAAYLARIAEAYPLQADGK-VLLAFPRL 250 (258)
T ss_pred HhCC-CceeeeeeeeeeecC---CchhhhhhhhhccHHHHHhhCCHHHHHHHHHHHHHHHHHHCCCCCCCc-EEcccceE
Confidence 9886 555443332111232 367889999986543344789999999999999998877632 1110 12344555
Q ss_pred EEEEEe
Q 037735 323 FILLKR 328 (329)
Q Consensus 323 ~~~L~r 328 (329)
+++-+|
T Consensus 251 ~~~~~~ 256 (258)
T PRK01683 251 FIVARR 256 (258)
T ss_pred EEEEEe
Confidence 665554
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.2e-15 Score=138.18 Aligned_cols=226 Identities=15% Similarity=0.153 Sum_probs=147.7
Q ss_pred CcchHHHhHHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEe
Q 037735 7 AHSYASNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFF 86 (329)
Q Consensus 7 ~~sY~~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~ 86 (329)
...|.+++..|.+.+..+++.+. .....+|+|+|||+|..+..+.. + .|..+|+.
T Consensus 4 ~~~y~~~~~~~~~~~~~ll~~l~----------~~~~~~vLDlGcG~G~~~~~l~~--------~-------~p~~~v~g 58 (255)
T PRK14103 4 PDVYLAFADHRGRPFYDLLARVG----------AERARRVVDLGCGPGNLTRYLAR--------R-------WPGAVIEA 58 (255)
T ss_pred HHHHHHHHhHhhCHHHHHHHhCC----------CCCCCEEEEEcCCCCHHHHHHHH--------H-------CCCCEEEE
Confidence 45799999999988877655544 23458999999999998887754 2 23468999
Q ss_pred cCCCcchHHhhhhcCCCCcceeeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHH
Q 037735 87 NDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAA 166 (329)
Q Consensus 87 nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~ 166 (329)
.|+..++....-.. ..-|.. +++ +.+.|++++|+|+|+.++||+.+.
T Consensus 59 vD~s~~~~~~a~~~----~~~~~~---~d~-~~~~~~~~fD~v~~~~~l~~~~d~------------------------- 105 (255)
T PRK14103 59 LDSSPEMVAAARER----GVDART---GDV-RDWKPKPDTDVVVSNAALQWVPEH------------------------- 105 (255)
T ss_pred EECCHHHHHHHHhc----CCcEEE---cCh-hhCCCCCCceEEEEehhhhhCCCH-------------------------
Confidence 99987665543221 122343 355 456678899999999999997543
Q ss_pred HHhhcHHHHHHHHHHHhccCceEEEEecccCCCCcccCCcccchHHHHH--HHHHHHHhcCCcCCCcccCCCHHHHHHHH
Q 037735 167 QFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFG--SCLVELTKMGILSKEKMYNPTPKELEGII 244 (329)
Q Consensus 167 q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~--~a~~~l~~eG~i~~~~~y~ps~eE~~~~i 244 (329)
..+|+.-++.|+|||.+++.+.+..+. +. ......+. ..|...... .-.....++.+++++.+++
T Consensus 106 ------~~~l~~~~~~LkpgG~l~~~~~~~~~~-~~-----~~~~~~~~~~~~w~~~~~~-~~~~~~~~~~~~~~~~~~l 172 (255)
T PRK14103 106 ------ADLLVRWVDELAPGSWIAVQVPGNFDA-PS-----HAAVRALARREPWAKLLRD-IPFRVGAVVQTPAGYAELL 172 (255)
T ss_pred ------HHHHHHHHHhCCCCcEEEEEcCCCcCC-hh-----HHHHHHHhccCchhHHhcc-cccccCcCCCCHHHHHHHH
Confidence 377999999999999999987663221 10 01111111 224333211 0000004567999999999
Q ss_pred HhCCceEEeEEEEeecCcccccccHHHHhhhHhhhh-hhHHhhhcChHHHHHHHHHHHHHHHHhh
Q 037735 245 QRNGNFTIERMEKMTNPKQQVLCSASDLAVAMRAVY-EGLVKEHFGDEFVDKIFNHFATKAEENI 308 (329)
Q Consensus 245 ~~~g~f~i~~~e~~~~~~~~~~~~~~~~~~~iRa~~-e~~~~~~~g~~~~d~~f~ry~~~~~~~~ 308 (329)
++.| |++...+........ ....+..+++++. .+++ +.++++..++|-+.+.+.+.++.
T Consensus 173 ~~aG-f~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~l~~~~ 232 (255)
T PRK14103 173 TDAG-CKVDAWETTYVHQLT---GEDPVLDWITGTALRPVR-ERLSDDSWEQFRAELIPLLREAY 232 (255)
T ss_pred HhCC-CeEEEEeeeeeeeCC---Cchhhhhhhhccchhhhh-hhCCHHHHHHHHHHHHHHHHHHC
Confidence 9995 987665543211111 2455777777644 3344 47888888999899988887663
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-12 Score=122.03 Aligned_cols=161 Identities=17% Similarity=0.194 Sum_probs=105.3
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC------CCcceeeeccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP------QSRSYYAAGVPGS 115 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~------~~~~~f~~gvpgs 115 (329)
+..+|+|+|||||..+..+...+ .|..+|+..|+..++....-+..+ ..+-.|..+ +
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~--------------~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~---d 135 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKV--------------GSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEG---D 135 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHh--------------CCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEc---c
Confidence 45799999999999887765421 234589999999988876543322 011234444 5
Q ss_pred cccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 116 FYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 116 Fy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
..+-.+|++|+|++++++++||+.+. ..+|++.++.|+|||++++..++
T Consensus 136 ~~~lp~~~~sfD~V~~~~~l~~~~d~-------------------------------~~~l~ei~rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 136 ATDLPFDDCYFDAITMGYGLRNVVDR-------------------------------LKAMQEMYRVLKPGSRVSILDFN 184 (261)
T ss_pred cccCCCCCCCEeEEEEecccccCCCH-------------------------------HHHHHHHHHHcCcCcEEEEEECC
Confidence 64445899999999999999997543 47899999999999999999998
Q ss_pred cCCCCcccCCcccchHHH-HHHHHHHHH-hcCCcCCCc-------ccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 196 VPDGIPLVNNAAGSFYNT-FGSCLVELT-KMGILSKEK-------MYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~-l~~a~~~l~-~eG~i~~~~-------~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
+++.... ..+++. +...+.-+. .-|. .++- ..+++.+|+.+.++..| |++.+...
T Consensus 185 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~y~~l~~s~~~f~s~~el~~ll~~aG-F~~~~~~~ 248 (261)
T PLN02233 185 KSTQPFT-----TSMQEWMIDNVVVPVATGYGL-AKEYEYLKSSINEYLTGEELEKLALEAG-FSSAKHYE 248 (261)
T ss_pred CCCcHHH-----HHHHHHHHhhhhhHHHHHhCC-hHHHHHHHHHHHhcCCHHHHHHHHHHCC-CCEEEEEE
Confidence 7653210 011111 111111110 0121 0100 23689999999999884 98776544
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-12 Score=120.52 Aligned_cols=160 Identities=21% Similarity=0.258 Sum_probs=115.6
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCc---ceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSR---SYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~---~~f~~gvpgsFy~ 118 (329)
+..+|||+|||||..++.+.+.+ ++.+|+..|...+|++..-+.+.... -.|+.| ++.+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~---------------g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~---dAe~ 112 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSV---------------GTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVG---DAEN 112 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhc---------------CCceEEEEECCHHHHHHHHHHhhccCccceEEEEe---chhh
Confidence 57999999999999999998633 14689999999999998777665422 235554 7977
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCC
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
.+||++|+|++.+++.||++.+.+ +.|++.+|.|+|||++++.=+++++
T Consensus 113 LPf~D~sFD~vt~~fglrnv~d~~-------------------------------~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 113 LPFPDNSFDAVTISFGLRNVTDID-------------------------------KALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred CCCCCCccCEEEeeehhhcCCCHH-------------------------------HHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 779999999999999999998777 5599999999999999999998876
Q ss_pred CCcccCCcccchHH-----------HHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 199 GIPLVNNAAGSFYN-----------TFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 199 ~~~~~~~~~~~~~~-----------~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
..+.........+. .-.++++-|+..+ -.+|+.+++.+.+++. +|+.+..+.
T Consensus 162 ~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi------~~~p~~~~l~~~~~~~-gf~~i~~~~ 224 (238)
T COG2226 162 NPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESI------RRFPDQEELKQMIEKA-GFEEVRYEN 224 (238)
T ss_pred chhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHH------HhCCCHHHHHHHHHhc-CceEEeeEe
Confidence 43321100000011 0011222222222 5679999999999998 488766443
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.7e-12 Score=115.41 Aligned_cols=167 Identities=16% Similarity=0.127 Sum_probs=104.4
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~f~~gvpgsFy~ 118 (329)
...+|+|+|||+|..+..+.+.+ .|..+++..|+..++....-+.+. ..+--++. +++..
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~--------------~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~---~d~~~ 107 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAV--------------GPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVH---GNAME 107 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHh--------------CCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEE---echhc
Confidence 34799999999999998887522 344689999998776554333221 11122343 35655
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCC
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
-.+|++++|+|+++.++||+++. ..+|+...+.|+|||++++...+.++
T Consensus 108 ~~~~~~~fD~V~~~~~l~~~~~~-------------------------------~~~l~~~~~~Lk~gG~l~~~~~~~~~ 156 (231)
T TIGR02752 108 LPFDDNSFDYVTIGFGLRNVPDY-------------------------------MQVLREMYRVVKPGGKVVCLETSQPT 156 (231)
T ss_pred CCCCCCCccEEEEecccccCCCH-------------------------------HHHHHHHHHHcCcCeEEEEEECCCCC
Confidence 45788999999999999997543 37799999999999999988777654
Q ss_pred CCcccCCcccchHHHHHHHHHHHHhcCCc-----CCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 199 GIPLVNNAAGSFYNTFGSCLVELTKMGIL-----SKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~a~~~l~~eG~i-----~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
....... ....+..+--.+..+...+.. .+....+|+.+|+++.+++.| |++.+++.+
T Consensus 157 ~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG-f~~~~~~~~ 219 (231)
T TIGR02752 157 IPGFKQL-YFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAG-FKDVEVKSY 219 (231)
T ss_pred ChHHHHH-HHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC-CCeeEEEEc
Confidence 3211000 000000000011111110000 000056799999999999985 998887765
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-11 Score=111.12 Aligned_cols=215 Identities=15% Similarity=0.249 Sum_probs=143.9
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeecccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~l 120 (329)
..+.+|.|||||+|.-|.++.+ ++ |..++..-|-...|.......+|+. -|.-| +. ...
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~--------Rw-------P~A~i~GiDsS~~Mla~Aa~rlp~~--~f~~a---Dl-~~w 87 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLAR--------RW-------PDAVITGIDSSPAMLAKAAQRLPDA--TFEEA---DL-RTW 87 (257)
T ss_pred cccceeeecCCCCCHHHHHHHH--------hC-------CCCeEeeccCCHHHHHHHHHhCCCC--ceecc---cH-hhc
Confidence 4578999999999999999986 53 5679999999999999988888761 22222 12 455
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCC
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGI 200 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~ 200 (329)
-|....|+++|+.+||||.+=| ..|..--.+|.|||+|++.+++ |..
T Consensus 88 ~p~~~~dllfaNAvlqWlpdH~-------------------------------~ll~rL~~~L~Pgg~LAVQmPd--N~d 134 (257)
T COG4106 88 KPEQPTDLLFANAVLQWLPDHP-------------------------------ELLPRLVSQLAPGGVLAVQMPD--NLD 134 (257)
T ss_pred CCCCccchhhhhhhhhhccccH-------------------------------HHHHHHHHhhCCCceEEEECCC--ccC
Confidence 7999999999999999976654 5588888999999999999954 443
Q ss_pred cccCCcccchHHHHHHHHH-----H-HHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEeecCcccccc-cHHHHh
Q 037735 201 PLVNNAAGSFYNTFGSCLV-----E-LTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMTNPKQQVLC-SASDLA 273 (329)
Q Consensus 201 ~~~~~~~~~~~~~l~~a~~-----~-l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~~~~~~~~~-~~~~~~ 273 (329)
+.+ +..+.+..+ + |.+-|+ . .--.+++.-+-+++... +-+|.--++.-.+ ++ +.+.++
T Consensus 135 eps-------H~~mr~~A~~~p~~~~l~~~~~-~--r~~v~s~a~Yy~lLa~~-~~rvDiW~T~Y~h----~l~~a~aIv 199 (257)
T COG4106 135 EPS-------HRLMRETADEAPFAQELGGRGL-T--RAPLPSPAAYYELLAPL-ACRVDIWHTTYYH----QLPGADAIV 199 (257)
T ss_pred chh-------HHHHHHHHhcCchhhhhCcccc-c--cCCCCCHHHHHHHhCcc-cceeeeeeeeccc----cCCCccchh
Confidence 332 222222221 1 111121 0 03346888888888766 3444433333111 11 356789
Q ss_pred hhHhhhhh-hHHhhhcChHHHHHHHHHHHHHHHHhhhhhhhhcCC----CceEEEEEEEe
Q 037735 274 VAMRAVYE-GLVKEHFGDEFVDKIFNHFATKAEENISIIGQRVQD----SMMDLFILLKR 328 (329)
Q Consensus 274 ~~iRa~~e-~~~~~~~g~~~~d~~f~ry~~~~~~~~~~~~~~~~~----~~~~~~~~L~r 328 (329)
.|+|++.- |.+.. ++++--..|.++|..++.++.... .+. .+--+|||-+|
T Consensus 200 dWvkgTgLrP~L~~-L~e~~~~~FL~~Y~~~l~~aYP~~---~dGr~ll~FpRlFiVA~~ 255 (257)
T COG4106 200 DWVKGTGLRPYLDR-LDEEERQRFLDRYLALLAEAYPPR---ADGRVLLAFPRLFIVATR 255 (257)
T ss_pred hheeccccceeccc-cCHHHHHHHHHHHHHHHHHhCCCc---cCCcEEeecceEEEEEec
Confidence 99999664 55544 777777889999999986655422 222 34456666655
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1e-10 Score=109.76 Aligned_cols=195 Identities=12% Similarity=0.134 Sum_probs=122.4
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC-cceeeeccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS-RSYYAAGVPGSFYSS 119 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~-~~~f~~gvpgsFy~~ 119 (329)
.+..+|+|+|||+|..+..+.. .+ ..+|+..|+..++....-+..+.. +..|.. +++...
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~--------~~--------~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~---~D~~~~ 111 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINE--------KY--------GAHVHGVDICEKMVNIAKLRNSDKNKIEFEA---NDILKK 111 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHh--------hc--------CCEEEEEECCHHHHHHHHHHcCcCCceEEEE---CCcccC
Confidence 3457999999999998877753 11 258999999887766544433321 223444 467666
Q ss_pred cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCC
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDG 199 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~ 199 (329)
.+|++++|+|+|..++++++. .|...+|+..++.|+|||+++++-+...+.
T Consensus 112 ~~~~~~FD~V~s~~~l~h~~~-----------------------------~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~ 162 (263)
T PTZ00098 112 DFPENTFDMIYSRDAILHLSY-----------------------------ADKKKLFEKCYKWLKPNGILLITDYCADKI 162 (263)
T ss_pred CCCCCCeEEEEEhhhHHhCCH-----------------------------HHHHHHHHHHHHHcCCCcEEEEEEeccccc
Confidence 689999999999888766431 144588999999999999999987765432
Q ss_pred CcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEeecCcccccccHHHHhhhHhhh
Q 037735 200 IPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMTNPKQQVLCSASDLAVAMRAV 279 (329)
Q Consensus 200 ~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~~~~~~~~~~~~~~~~~iRa~ 279 (329)
.. .-+.+...+. ..+ ..+++++++.++++.. +|+.+..+.....|... -..+...+++-
T Consensus 163 ~~--------~~~~~~~~~~---~~~------~~~~~~~~~~~~l~~a-GF~~v~~~d~~~~~~~~---~~~~~~~~~~~ 221 (263)
T PTZ00098 163 EN--------WDEEFKAYIK---KRK------YTLIPIQEYGDLIKSC-NFQNVVAKDISDYWLEL---LQVELKKLEEK 221 (263)
T ss_pred cC--------cHHHHHHHHH---hcC------CCCCCHHHHHHHHHHC-CCCeeeEEeCcHHHHHH---HHHHHHHHHHh
Confidence 11 1112222221 123 4568999999999998 49988877653322110 01111222221
Q ss_pred hhhHHhhhcChHHHHHHHHHHHHHHH
Q 037735 280 YEGLVKEHFGDEFVDKIFNHFATKAE 305 (329)
Q Consensus 280 ~e~~~~~~~g~~~~d~~f~ry~~~~~ 305 (329)
+.-+.+.+|++-.+.+-.-+...+.
T Consensus 222 -~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (263)
T PTZ00098 222 -KEEFLKLYSEKEYNSLKDGWTRKIK 246 (263)
T ss_pred -HHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 1234445787777776666655543
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.7e-11 Score=116.68 Aligned_cols=180 Identities=15% Similarity=0.128 Sum_probs=113.4
Q ss_pred HHhHHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCc
Q 037735 12 SNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSD 91 (329)
Q Consensus 12 ~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ 91 (329)
.+...|...++.++..+.- .. .......+|+|+|||+|.++..+.+ ++ ..+|+..|+..
T Consensus 93 ~~~~aq~~~~~~~l~~~~~--~~---~~~~~~~~VLDiGCG~G~~~~~La~--------~~--------g~~v~gvD~s~ 151 (340)
T PLN02244 93 DHRQAQIRMIEESLAWAGV--PD---DDEKRPKRIVDVGCGIGGSSRYLAR--------KY--------GANVKGITLSP 151 (340)
T ss_pred cHHHHHHHHHHHHHHhcCC--Cc---ccCCCCCeEEEecCCCCHHHHHHHH--------hc--------CCEEEEEECCH
Confidence 3556666666555444320 00 0013457899999999999988875 21 24789999987
Q ss_pred chHHhhhhcCC---C-CcceeeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHH
Q 037735 92 NDFNTLFKSLP---Q-SRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQ 167 (329)
Q Consensus 92 ndfn~lf~~l~---~-~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q 167 (329)
++....-+... . .+-.|..+ ++.+..||++++|+|+|..++|++.+
T Consensus 152 ~~i~~a~~~~~~~g~~~~v~~~~~---D~~~~~~~~~~FD~V~s~~~~~h~~d--------------------------- 201 (340)
T PLN02244 152 VQAARANALAAAQGLSDKVSFQVA---DALNQPFEDGQFDLVWSMESGEHMPD--------------------------- 201 (340)
T ss_pred HHHHHHHHHHHhcCCCCceEEEEc---CcccCCCCCCCccEEEECCchhccCC---------------------------
Confidence 76554332211 1 12235544 56566689999999999999988643
Q ss_pred HhhcHHHHHHHHHHHhccCceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCC---CHHHHHHHH
Q 037735 168 FNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNP---TPKELEGII 244 (329)
Q Consensus 168 ~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~p---s~eE~~~~i 244 (329)
...+|+..++.|+|||+++++.....+..+... . +...-...+..+.. + .|+| +.+|+.+++
T Consensus 202 ----~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~-~---l~~~~~~~~~~i~~-~------~~~p~~~s~~~~~~~l 266 (340)
T PLN02244 202 ----KRKFVQELARVAAPGGRIIIVTWCHRDLEPGET-S---LKPDEQKLLDKICA-A------YYLPAWCSTSDYVKLA 266 (340)
T ss_pred ----HHHHHHHHHHHcCCCcEEEEEEecccccccccc-c---CCHHHHHHHHHHHh-h------ccCCCCCCHHHHHHHH
Confidence 347899999999999999999876544322100 0 00011112222211 2 3333 899999999
Q ss_pred HhCCceEEeEEEEe
Q 037735 245 QRNGNFTIERMEKM 258 (329)
Q Consensus 245 ~~~g~f~i~~~e~~ 258 (329)
++.| |+.++.+.+
T Consensus 267 ~~aG-f~~v~~~d~ 279 (340)
T PLN02244 267 ESLG-LQDIKTEDW 279 (340)
T ss_pred HHCC-CCeeEeeeC
Confidence 9885 998776654
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-12 Score=120.70 Aligned_cols=159 Identities=21% Similarity=0.266 Sum_probs=77.4
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---Ccceeeeccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---SRSYYAAGVPGSFY 117 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~~~~f~~gvpgsFy 117 (329)
.+..+|+|+|||||..|..+...+ .|..+|+..|+..+|....-+.+.. .+--|+.| ++.
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~--------------~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~---da~ 108 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRV--------------GPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQG---DAE 108 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGS--------------S---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE----BTT
T ss_pred CCCCEEEEeCCChHHHHHHHHHHC--------------CCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEc---CHH
Confidence 446799999999999999886422 3456899999999998876554432 12335654 676
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
+-.||++|+|.+++++.+|-+.+. .+.|++..|.|+|||++++.=++++
T Consensus 109 ~lp~~d~sfD~v~~~fglrn~~d~-------------------------------~~~l~E~~RVLkPGG~l~ile~~~p 157 (233)
T PF01209_consen 109 DLPFPDNSFDAVTCSFGLRNFPDR-------------------------------ERALREMYRVLKPGGRLVILEFSKP 157 (233)
T ss_dssp B--S-TT-EEEEEEES-GGG-SSH-------------------------------HHHHHHHHHHEEEEEEEEEEEEEB-
T ss_pred HhcCCCCceeEEEHHhhHHhhCCH-------------------------------HHHHHHHHHHcCCCeEEEEeeccCC
Confidence 666999999999999999986543 4779999999999999999999887
Q ss_pred CCCcccCCcccchHHHHHHHHHH-HH--hcCCcCCCc----------ccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 198 DGIPLVNNAAGSFYNTFGSCLVE-LT--KMGILSKEK----------MYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~a~~~-l~--~eG~i~~~~----------~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
+... +..+-..|-. .+ -..++.++. .-+|+.+|+.+.+++.| |+..+.+.
T Consensus 158 ~~~~---------~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~G-f~~v~~~~ 220 (233)
T PF01209_consen 158 RNPL---------LRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAG-FKNVEYRP 220 (233)
T ss_dssp SSHH---------HHHHHHH-----------------------------------------------------
T ss_pred CCch---------hhceeeeeecccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 6321 1111111111 00 112334332 45689999999999884 88765554
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.7e-10 Score=116.49 Aligned_cols=186 Identities=15% Similarity=0.227 Sum_probs=123.4
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--Ccceeeeccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--SRSYYAAGVPGSFYSS 119 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--~~~~f~~gvpgsFy~~ 119 (329)
+..+|+|+|||+|..+..+.+ . ...+++..|+........-+.... .+..|..+ ++...
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~--------~--------~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~---d~~~~ 326 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAE--------N--------FDVHVVGIDLSVNMISFALERAIGRKCSVEFEVA---DCTKK 326 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHH--------h--------cCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEc---CcccC
Confidence 456899999999998876653 1 125799999987665543332211 12234443 67666
Q ss_pred cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCC
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDG 199 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~ 199 (329)
.+|++++|+|+|..+++|+.+. ..+|+..++.|+|||+++++.+.+...
T Consensus 327 ~~~~~~fD~I~s~~~l~h~~d~-------------------------------~~~l~~~~r~LkpgG~l~i~~~~~~~~ 375 (475)
T PLN02336 327 TYPDNSFDVIYSRDTILHIQDK-------------------------------PALFRSFFKWLKPGGKVLISDYCRSPG 375 (475)
T ss_pred CCCCCCEEEEEECCcccccCCH-------------------------------HHHHHHHHHHcCCCeEEEEEEeccCCC
Confidence 7889999999999999997543 378999999999999999999876543
Q ss_pred CcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEeecCcccccccHHHHhhhHhhh
Q 037735 200 IPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMTNPKQQVLCSASDLAVAMRAV 279 (329)
Q Consensus 200 ~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~~~~~~~~~~~~~~~~~iRa~ 279 (329)
.+. ..+... +...| .++++.+++.+++++. ||++...+.+..+ +..+++.+
T Consensus 376 ~~~---------~~~~~~---~~~~g------~~~~~~~~~~~~l~~a-GF~~i~~~d~~~~----------~~~~~~~~ 426 (475)
T PLN02336 376 TPS---------PEFAEY---IKQRG------YDLHDVQAYGQMLKDA-GFDDVIAEDRTDQ----------FLQVLQRE 426 (475)
T ss_pred CCc---------HHHHHH---HHhcC------CCCCCHHHHHHHHHHC-CCeeeeeecchHH----------HHHHHHHH
Confidence 221 011111 22335 6678999999999998 5999877655322 23333222
Q ss_pred hhh------HHhhhcChHHHHHHHHHHHHHHHH
Q 037735 280 YEG------LVKEHFGDEFVDKIFNHFATKAEE 306 (329)
Q Consensus 280 ~e~------~~~~~~g~~~~d~~f~ry~~~~~~ 306 (329)
.+. -+...+|++..+.+...+...+..
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 459 (475)
T PLN02336 427 LDAVEKEKDEFISDFSEEDYNDIVGGWKAKLVR 459 (475)
T ss_pred HHHHHhCHHHHHHhcCHHHHHHHHHhHHHHHhh
Confidence 222 223456777777776666666543
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.9e-12 Score=96.14 Aligned_cols=95 Identities=26% Similarity=0.287 Sum_probs=72.3
Q ss_pred EeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccCCCCce
Q 037735 47 ADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLFPKSSL 126 (329)
Q Consensus 47 aDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lfp~~s~ 126 (329)
||+|||+|.++..+.+ .+...++..|.........-+.......-+..+ ++..-.||++|+
T Consensus 1 LdiG~G~G~~~~~l~~----------------~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~---d~~~l~~~~~sf 61 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAK----------------RGGASVTGIDISEEMLEQARKRLKNEGVSFRQG---DAEDLPFPDNSF 61 (95)
T ss_dssp EEET-TTSHHHHHHHH----------------TTTCEEEEEES-HHHHHHHHHHTTTSTEEEEES---BTTSSSS-TT-E
T ss_pred CEecCcCCHHHHHHHh----------------ccCCEEEEEeCCHHHHHHHHhcccccCchheee---hHHhCccccccc
Confidence 7999999999999986 223689999998877676666554432225544 676667999999
Q ss_pred eEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEE
Q 037735 127 HFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAAL 191 (329)
Q Consensus 127 dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~ 191 (329)
|+++++.++||+ + |...+|++.+|.|+|||++++
T Consensus 62 D~v~~~~~~~~~---~----------------------------~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 62 DVVFSNSVLHHL---E----------------------------DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EEEEEESHGGGS---S----------------------------HHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccccceeec---c----------------------------CHHHHHHHHHHHcCcCeEEeC
Confidence 999999999998 2 456899999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.3e-12 Score=107.42 Aligned_cols=136 Identities=22% Similarity=0.285 Sum_probs=94.0
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccc--c
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFY--S 118 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy--~ 118 (329)
.+..+|+|+|||+|.++..+.. .+ .+++..|....+... ... ++..|. .
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~----------------~~-~~~~g~D~~~~~~~~--~~~----------~~~~~~~~~ 71 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAK----------------RG-FEVTGVDISPQMIEK--RNV----------VFDNFDAQD 71 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHH----------------TT-SEEEEEESSHHHHHH--TTS----------EEEEEECHT
T ss_pred CCCCEEEEEcCCCCHHHHHHHH----------------hC-CEEEEEECCHHHHhh--hhh----------hhhhhhhhh
Confidence 4568999999999988777743 12 489999997655433 110 111232 3
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCC
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
..+|++++|+|+|+.+|||+.+ +..+|+...+-|+|||+++++++.+..
T Consensus 72 ~~~~~~~fD~i~~~~~l~~~~d-------------------------------~~~~l~~l~~~LkpgG~l~~~~~~~~~ 120 (161)
T PF13489_consen 72 PPFPDGSFDLIICNDVLEHLPD-------------------------------PEEFLKELSRLLKPGGYLVISDPNRDD 120 (161)
T ss_dssp HHCHSSSEEEEEEESSGGGSSH-------------------------------HHHHHHHHHHCEEEEEEEEEEEEBTTS
T ss_pred hhccccchhhHhhHHHHhhccc-------------------------------HHHHHHHHHHhcCCCCEEEEEEcCCcc
Confidence 4478999999999999999764 348899999999999999999998753
Q ss_pred CCcccCCcccchHHHHHHHHHHHHhcCCcCCC-c-ccCCCHHHHHHHHHhCCceEEeE
Q 037735 199 GIPLVNNAAGSFYNTFGSCLVELTKMGILSKE-K-MYNPTPKELEGIIQRNGNFTIER 254 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~-~-~y~ps~eE~~~~i~~~g~f~i~~ 254 (329)
.. ...+... ...... . ..+-+.++++.++++.| |+|++
T Consensus 121 ~~--------------~~~~~~~---~~~~~~~~~~~~~~~~~~~~ll~~~G-~~iv~ 160 (161)
T PF13489_consen 121 PS--------------PRSFLKW---RYDRPYGGHVHFFSPDELRQLLEQAG-FEIVE 160 (161)
T ss_dssp HH--------------HHHHHHC---CGTCHHTTTTEEBBHHHHHHHHHHTT-EEEEE
T ss_pred hh--------------hhHHHhc---CCcCccCceeccCCHHHHHHHHHHCC-CEEEE
Confidence 10 0001111 111110 1 55679999999999995 99864
|
... |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.6e-09 Score=96.47 Aligned_cols=220 Identities=16% Similarity=0.114 Sum_probs=127.9
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--CCcceeeecccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--QSRSYYAAGVPGSFYS 118 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~~~~~f~~gvpgsFy~ 118 (329)
....+|+|+|||+|..+..+.... .|..+++..|+..+.....-+... .....|..+ ++..
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~--------------~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~---d~~~ 80 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRV--------------GPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRG---DADG 80 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhc--------------CCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEec---cccc
Confidence 345799999999999888776522 234589999998766554433311 111224433 4544
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCC
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
..++++++|++++..++||+.+. ..+|+..++.|+|||.+++..+..+.
T Consensus 81 ~~~~~~~~D~v~~~~~~~~~~~~-------------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~ 129 (241)
T PRK08317 81 LPFPDGSFDAVRSDRVLQHLEDP-------------------------------ARALAEIARVLRPGGRVVVLDTDWDT 129 (241)
T ss_pred CCCCCCCceEEEEechhhccCCH-------------------------------HHHHHHHHHHhcCCcEEEEEecCCCc
Confidence 45788999999999999997643 37799999999999999998754322
Q ss_pred CCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEeecCcccccccHHHHhhhHhh
Q 037735 199 GIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMTNPKQQVLCSASDLAVAMRA 278 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~~~~~~~~~~~~~~~~~iRa 278 (329)
... .......+..+...|.. .+ .-..+..++.+.+++. +|+...++....... ...+......+..
T Consensus 130 ~~~--~~~~~~~~~~~~~~~~~---~~------~~~~~~~~~~~~l~~a-Gf~~~~~~~~~~~~~--~~~~~~~~~~l~~ 195 (241)
T PRK08317 130 LVW--HSGDRALMRKILNFWSD---HF------ADPWLGRRLPGLFREA-GLTDIEVEPYTLIET--DLKEADKGFGLIR 195 (241)
T ss_pred eee--cCCChHHHHHHHHHHHh---cC------CCCcHHHHHHHHHHHc-CCCceeEEEEEEecc--CcchhhHHHHHHH
Confidence 110 00111122233333332 11 1223457899999988 598887776532210 0012222333333
Q ss_pred hhhhHH-hhhcChHHHHHHHHHHHHHHHHhhhhhhhhcCCCceEEEEEEEeC
Q 037735 279 VYEGLV-KEHFGDEFVDKIFNHFATKAEENISIIGQRVQDSMMDLFILLKRI 329 (329)
Q Consensus 279 ~~e~~~-~~~~g~~~~d~~f~ry~~~~~~~~~~~~~~~~~~~~~~~~~L~r~ 329 (329)
....+. ...++++-+++++...++..... ..+-.+.++++..||
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~k 240 (241)
T PRK08317 196 AARRAVEAGGISADEADAWLADLAQLARAG-------EFFFSVTGFLVVGRK 240 (241)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhcC-------CEEEEEEEEEEEEeC
Confidence 222222 23356677788888777654321 112246666666554
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-10 Score=107.49 Aligned_cols=153 Identities=17% Similarity=0.192 Sum_probs=97.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---C-cceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---S-RSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~-~~~f~~gvpgsFy 117 (329)
+..+|+|+|||+|.++..+.+.+ ..|..+++..|+..++....-+.+.. . +--|.. +++.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~-------------~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~---~d~~ 116 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNI-------------NQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILC---NDIR 116 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhc-------------CCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEE---CChh
Confidence 44689999999999998887522 13557899999988776665444322 1 112443 4674
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
.-.+| +.|+++|++++||++. .|...+|+...+.|+|||.++++-....
T Consensus 117 ~~~~~--~~d~v~~~~~l~~~~~-----------------------------~~~~~~l~~i~~~LkpgG~l~i~d~~~~ 165 (239)
T TIGR00740 117 HVEIK--NASMVILNFTLQFLPP-----------------------------EDRIALLTKIYEGLNPNGVLVLSEKFRF 165 (239)
T ss_pred hCCCC--CCCEEeeecchhhCCH-----------------------------HHHHHHHHHHHHhcCCCeEEEEeecccC
Confidence 43344 5789999999999752 1345889999999999999999865443
Q ss_pred CCCcccCCcccchHHHHHHHHHHHH-hcCCcCCCc-----------ccCCCHHHHHHHHHhCCceE
Q 037735 198 DGIPLVNNAAGSFYNTFGSCLVELT-KMGILSKEK-----------MYNPTPKELEGIIQRNGNFT 251 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~a~~~l~-~eG~i~~~~-----------~y~ps~eE~~~~i~~~g~f~ 251 (329)
+... ..+.+...+.... ..|. +.++ ....|++|+.+++++.| |.
T Consensus 166 ~~~~--------~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aG-F~ 221 (239)
T TIGR00740 166 EDTK--------INHLLIDLHHQFKRANGY-SELEISQKRTALENVMRTDSIETHKARLKNVG-FS 221 (239)
T ss_pred CCHh--------HHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHhccCCCCCHHHHHHHHHHcC-Cc
Confidence 3221 1122333333332 2342 2211 33357788888877774 65
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=5e-09 Score=103.44 Aligned_cols=147 Identities=14% Similarity=0.162 Sum_probs=97.4
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccC
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLF 121 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lf 121 (329)
+..+|+|+|||+|.++..+.+ ++ ..+|+..|+..++....-+.......-+.. +++ ..+
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~--------~~--------g~~V~giDlS~~~l~~A~~~~~~l~v~~~~---~D~-~~l- 225 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAE--------HY--------GVSVVGVTISAEQQKLAQERCAGLPVEIRL---QDY-RDL- 225 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHH--------HC--------CCEEEEEeCCHHHHHHHHHHhccCeEEEEE---Cch-hhc-
Confidence 346999999999999887764 21 257999999887766654444321111222 233 233
Q ss_pred CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCCc
Q 037735 122 PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIP 201 (329)
Q Consensus 122 p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~ 201 (329)
++++|.|+|..+++|+.. +++..+|+...+.|+|||.+++..++.+....
T Consensus 226 -~~~fD~Ivs~~~~ehvg~-----------------------------~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~ 275 (383)
T PRK11705 226 -NGQFDRIVSVGMFEHVGP-----------------------------KNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDT 275 (383)
T ss_pred -CCCCCEEEEeCchhhCCh-----------------------------HHHHHHHHHHHHHcCCCcEEEEEEccCCCCCC
Confidence 578999999999998532 24558899999999999999999988765321
Q ss_pred ccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 202 LVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 202 ~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
... .| +...+--| -++|+++++...++. +|++..++.+
T Consensus 276 ~~~-----~~------i~~yifp~------g~lps~~~i~~~~~~--~~~v~d~~~~ 313 (383)
T PRK11705 276 NVD-----PW------INKYIFPN------GCLPSVRQIAQASEG--LFVMEDWHNF 313 (383)
T ss_pred CCC-----CC------ceeeecCC------CcCCCHHHHHHHHHC--CcEEEEEecC
Confidence 100 00 00000001 357999999998763 4998887765
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.6e-10 Score=104.41 Aligned_cols=155 Identities=16% Similarity=0.252 Sum_probs=100.7
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---C-cceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---S-RSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~-~~~f~~gvpgsF 116 (329)
..+.+|+|+|||+|..+..+.. . ..+|+..|+..++....-+.+.. . +-.|+.+ ++
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~--------~---------g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~---d~ 102 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAE--------L---------GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHC---AA 102 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHH--------c---------CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEc---CH
Confidence 4467999999999999888864 1 14799999988776654443321 1 1234443 44
Q ss_pred cccc-CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 117 YSSL-FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 117 y~~l-fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
.+-. ++++++|+|++..++||+.+++ .+|+..++.|+|||++++.+..
T Consensus 103 ~~l~~~~~~~fD~V~~~~vl~~~~~~~-------------------------------~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 103 QDIAQHLETPVDLILFHAVLEWVADPK-------------------------------SVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred HHHhhhcCCCCCEEEehhHHHhhCCHH-------------------------------HHHHHHHHHcCCCeEEEEEEEC
Confidence 3322 5678999999999999986543 6699999999999999988766
Q ss_pred cCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCc-----ccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 196 VPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEK-----MYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~-----~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
..... +-..+..-+. .+..|+...+. .+..+++++.++++.. +|+++...-
T Consensus 152 ~~~~~---------~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~a-Gf~~~~~~g 207 (255)
T PRK11036 152 ANGLL---------MHNMVAGNFD-YVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEA-GWQIMGKTG 207 (255)
T ss_pred ccHHH---------HHHHHccChH-HHHhcCccccccCCCCCCCCCHHHHHHHHHHC-CCeEeeeee
Confidence 44210 0001111111 12233322222 3445899999999988 499976554
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.5e-09 Score=98.42 Aligned_cols=160 Identities=19% Similarity=0.259 Sum_probs=103.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC----Ccceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ----SRSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~----~~~~f~~gvpgsFy 117 (329)
+..+|+|+|||+|..+..+.... .+..+++..|+..+.....-+.+.. ....|.. +++.
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~--------------~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~---~d~~ 113 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAV--------------GKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQ---GDAE 113 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHc--------------CCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEe---cccc
Confidence 34799999999999988886522 1136899999987665554333321 1122333 3565
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
+..++++++|++++++.+|++++++ .+|+...+-|+|||.+++..+..+
T Consensus 114 ~~~~~~~~~D~I~~~~~l~~~~~~~-------------------------------~~l~~~~~~L~~gG~li~~~~~~~ 162 (239)
T PRK00216 114 ALPFPDNSFDAVTIAFGLRNVPDID-------------------------------KALREMYRVLKPGGRLVILEFSKP 162 (239)
T ss_pred cCCCCCCCccEEEEecccccCCCHH-------------------------------HHHHHHHHhccCCcEEEEEEecCC
Confidence 5557788999999999999976543 779999999999999998876554
Q ss_pred CCCcccCCcccchHHHHHHHHHH--------HHhcCCcCCC---c--ccCCCHHHHHHHHHhCCceEEeEEEEee
Q 037735 198 DGIPLVNNAAGSFYNTFGSCLVE--------LTKMGILSKE---K--MYNPTPKELEGIIQRNGNFTIERMEKMT 259 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~a~~~--------l~~eG~i~~~---~--~y~ps~eE~~~~i~~~g~f~i~~~e~~~ 259 (329)
.... +..+...+.. .......... . .++++.+++..++++.| |++.+...+.
T Consensus 163 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~~ 227 (239)
T PRK00216 163 TNPP---------LKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAG-FERVRYRNLT 227 (239)
T ss_pred CchH---------HHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCC-Cceeeeeeee
Confidence 3211 1111111111 1111000000 0 35679999999999994 9988777653
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.6e-10 Score=108.35 Aligned_cols=150 Identities=17% Similarity=0.172 Sum_probs=102.0
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccC
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLF 121 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lf 121 (329)
...+|+|+|||+|.++..+.+ . .+..+++..|+..++....-+..+..+--++ .++..+..+
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~--------~-------~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i---~gD~e~lp~ 174 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVK--------H-------VDAKNVTILDQSPHQLAKAKQKEPLKECKII---EGDAEDLPF 174 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHH--------H-------CCCCEEEEEECCHHHHHHHHHhhhccCCeEE---eccHHhCCC
Confidence 357999999999998887764 2 1225899999988776655443321112233 346655557
Q ss_pred CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCCc
Q 037735 122 PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIP 201 (329)
Q Consensus 122 p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~ 201 (329)
+++++|+++|+.++|++.+. ...|++..+.|+|||++++.....++.
T Consensus 175 ~~~sFDvVIs~~~L~~~~d~-------------------------------~~~L~e~~rvLkPGG~LvIi~~~~p~~-- 221 (340)
T PLN02490 175 PTDYADRYVSAGSIEYWPDP-------------------------------QRGIKEAYRVLKIGGKACLIGPVHPTF-- 221 (340)
T ss_pred CCCceeEEEEcChhhhCCCH-------------------------------HHHHHHHHHhcCCCcEEEEEEecCcch--
Confidence 89999999999999986543 267999999999999998864322110
Q ss_pred ccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEeecCcc
Q 037735 202 LVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMTNPKQ 263 (329)
Q Consensus 202 ~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~~~~~ 263 (329)
+ +..-+.++ - ..+++.+|+.+++++. +|+.++++.+.+.|+
T Consensus 222 ---------~--~~r~~~~~---~------~~~~t~eEl~~lL~~a-GF~~V~i~~i~~~~~ 262 (340)
T PLN02490 222 ---------W--LSRFFADV---W------MLFPKEEEYIEWFTKA-GFKDVKLKRIGPKWY 262 (340)
T ss_pred ---------h--HHHHhhhh---h------ccCCCHHHHHHHHHHC-CCeEEEEEEcChhhc
Confidence 0 01101111 0 3468999999999988 599888877655554
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.3e-10 Score=107.91 Aligned_cols=154 Identities=16% Similarity=0.135 Sum_probs=101.3
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--C--Ccceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--Q--SRSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~--~~~~f~~gvpgsFy 117 (329)
+..+|+|+|||+|.++..+.. +..+|+.-|+...+.....+... . ..-.|..+ ++.
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~-----------------~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~---dae 190 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR-----------------MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCT---TAE 190 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH-----------------cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEec---CHH
Confidence 346899999999998886652 12589999999877665543321 1 11224443 554
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
+-.++++++|+|++..++||+.+++ .||+..++.|+|||+++++++.+.
T Consensus 191 ~l~~~~~~FD~Vi~~~vLeHv~d~~-------------------------------~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 191 KLADEGRKFDAVLSLEVIEHVANPA-------------------------------EFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred HhhhccCCCCEEEEhhHHHhcCCHH-------------------------------HHHHHHHHHcCCCcEEEEEECCcC
Confidence 4346788999999999999977543 789999999999999999998654
Q ss_pred CCCcccCCcccchHHHH-HHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 198 DGIPLVNNAAGSFYNTF-GSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~l-~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
... .....+ ..-+...+..|. ..-..+.+++|+...+++. +|++..+.-
T Consensus 240 ~~~--------~~~~i~~~eyi~~~lp~gt--h~~~~f~tp~eL~~lL~~a-Gf~i~~~~G 289 (322)
T PLN02396 240 MRA--------YASTIVGAEYILRWLPKGT--HQWSSFVTPEELSMILQRA-SVDVKEMAG 289 (322)
T ss_pred HHH--------HHHhhhhHHHHHhcCCCCC--cCccCCCCHHHHHHHHHHc-CCeEEEEee
Confidence 210 000000 011111122221 0003467999999999998 499987764
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.9e-10 Score=107.13 Aligned_cols=149 Identities=19% Similarity=0.203 Sum_probs=96.0
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHh---hhhcCCCC-cceeeecccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNT---LFKSLPQS-RSYYAAGVPGSFYS 118 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~---lf~~l~~~-~~~f~~gvpgsFy~ 118 (329)
..+|+|+|||+|..+..++. . .+. +|+..|....++.. .-+..... +-.|. ++++.+
T Consensus 123 g~~VLDIGCG~G~~~~~la~--------~-------g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~---~~d~e~ 183 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLG--------A-------GAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLL---PLGIEQ 183 (322)
T ss_pred CCEEEEeccCCcHHHHHHHH--------c-------CCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEE---eCCHHH
Confidence 46899999999999988764 1 232 69999977655432 11112111 12233 335533
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCC
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
-.+ ++++|+|+|..++||..+ ...+|+..++.|+|||.+++.++..+.
T Consensus 184 lp~-~~~FD~V~s~~vl~H~~d-------------------------------p~~~L~~l~~~LkpGG~lvl~~~~i~~ 231 (322)
T PRK15068 184 LPA-LKAFDTVFSMGVLYHRRS-------------------------------PLDHLKQLKDQLVPGGELVLETLVIDG 231 (322)
T ss_pred CCC-cCCcCEEEECChhhccCC-------------------------------HHHHHHHHHHhcCCCcEEEEEEEEecC
Confidence 333 788999999999998653 347799999999999999999875443
Q ss_pred CCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 199 GIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
.... .++. ...+..| .+. .+.||.+++..++++.| |+++++...
T Consensus 232 ~~~~------~l~p--~~~y~~~--~~~-----~~lps~~~l~~~L~~aG-F~~i~~~~~ 275 (322)
T PRK15068 232 DENT------VLVP--GDRYAKM--RNV-----YFIPSVPALKNWLERAG-FKDVRIVDV 275 (322)
T ss_pred CCcc------ccCc--hhHHhcC--ccc-----eeCCCHHHHHHHHHHcC-CceEEEEeC
Confidence 2110 0000 0001111 111 45689999999999995 998887754
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.8e-09 Score=94.75 Aligned_cols=159 Identities=19% Similarity=0.251 Sum_probs=101.2
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC-CCcceeeecccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP-QSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~-~~~~~f~~gvpgsFy~~l 120 (329)
+..+|+|+|||+|..+..+.... .+..+++..|+........-+.++ ..+..+.. +++.+..
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~--------------~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~---~d~~~~~ 101 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSA--------------PDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQ---ADAEALP 101 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhc--------------CCCceEEEEECCHHHHHHHHHHhccCCCceEEe---cchhcCC
Confidence 46799999999999988886421 111579999986555444433332 11122333 4565656
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCC
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGI 200 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~ 200 (329)
++++++|+++++..+|+..+. ..+|+..++.|+|||++++...-.+...
T Consensus 102 ~~~~~~D~i~~~~~~~~~~~~-------------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~ 150 (223)
T TIGR01934 102 FEDNSFDAVTIAFGLRNVTDI-------------------------------QKALREMYRVLKPGGRLVILEFSKPANA 150 (223)
T ss_pred CCCCcEEEEEEeeeeCCcccH-------------------------------HHHHHHHHHHcCCCcEEEEEEecCCCch
Confidence 788899999999999986543 3779999999999999998765433221
Q ss_pred cccCCcccchHHHHHHHHHH-HH--hcCCcCCCc----------ccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 201 PLVNNAAGSFYNTFGSCLVE-LT--KMGILSKEK----------MYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 201 ~~~~~~~~~~~~~l~~a~~~-l~--~eG~i~~~~----------~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
+ +..+.+.+.. +. ..+...... ..+++.+|+..++++.| |++...+..
T Consensus 151 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~ 211 (223)
T TIGR01934 151 L---------LKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKEAG-FEEVRYRSL 211 (223)
T ss_pred h---------hHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHHcC-Cccceeeee
Confidence 1 1222222221 11 011111111 23578999999999885 998877754
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.8e-10 Score=101.92 Aligned_cols=107 Identities=21% Similarity=0.282 Sum_probs=75.5
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---C-cceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---S-RSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~-~~~f~~gvpgsF 116 (329)
.+..+|+|+|||+|.++..+...+ . .|..+++..|+...+....-+.+.. . +.-+.. +++
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~--------~-----~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~---~d~ 118 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNI--------H-----HDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIE---GDI 118 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhc--------C-----CCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEe---CCh
Confidence 345789999999999988876422 1 3557899999988777665444321 1 122333 455
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
.+-.+ ...|++++++++||++. + +...+|+..++.|+|||.|+++-.
T Consensus 119 ~~~~~--~~~D~vv~~~~l~~l~~-~----------------------------~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 119 RDIAI--ENASMVVLNFTLQFLEP-S----------------------------ERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred hhCCC--CCCCEEehhhHHHhCCH-H----------------------------HHHHHHHHHHHhcCCCCEEEEEEe
Confidence 44333 35899999999999863 1 234789999999999999999863
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.3e-10 Score=100.19 Aligned_cols=199 Identities=18% Similarity=0.203 Sum_probs=133.5
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC--cceeeeccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS--RSYYAAGVPGSFYSS 119 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~--~~~f~~gvpgsFy~~ 119 (329)
..-..+|+|||-|..+..+...- . -+++..|....|..+....-.+. ..||+. += +.
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~---------------v-ekli~~DtS~~M~~s~~~~qdp~i~~~~~v~----DE-E~ 130 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG---------------V-EKLIMMDTSYDMIKSCRDAQDPSIETSYFVG----DE-EF 130 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc---------------h-hheeeeecchHHHHHhhccCCCceEEEEEec----ch-hc
Confidence 34567999999999999887522 2 26888898877766654432111 133432 22 55
Q ss_pred c-CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCC
Q 037735 120 L-FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 120 l-fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
| |-.||+|+++||.++||.+++|.. +..+...|||.|.++-+++|-++
T Consensus 131 Ldf~ens~DLiisSlslHW~NdLPg~-------------------------------m~~ck~~lKPDg~FiasmlggdT 179 (325)
T KOG2940|consen 131 LDFKENSVDLIISSLSLHWTNDLPGS-------------------------------MIQCKLALKPDGLFIASMLGGDT 179 (325)
T ss_pred ccccccchhhhhhhhhhhhhccCchH-------------------------------HHHHHHhcCCCccchhHHhcccc
Confidence 5 899999999999999999999944 88899999999999999999887
Q ss_pred CCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEeecC-cccccccHHHHhhhHh
Q 037735 199 GIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMTNP-KQQVLCSASDLAVAMR 277 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~~~-~~~~~~~~~~~~~~iR 277 (329)
..++ -++--+.+|-.+|-|+..---+-...++..++... +|....+.+-+.. -+. ..-++.-++|
T Consensus 180 LyEL----------R~slqLAelER~GGiSphiSPf~qvrDiG~LL~rA-GF~m~tvDtDEi~v~Yp---~mfeLm~dLq 245 (325)
T KOG2940|consen 180 LYEL----------RCSLQLAELEREGGISPHISPFTQVRDIGNLLTRA-GFSMLTVDTDEIVVGYP---RMFELMEDLQ 245 (325)
T ss_pred HHHH----------HHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhc-CcccceecccceeecCc---hHHHHHHHHH
Confidence 3321 12334677778887766543334567788888888 4887766543221 121 2345677888
Q ss_pred hhhhh--HHh--hhcChHHHHHHHHHHHHHHHH
Q 037735 278 AVYEG--LVK--EHFGDEFVDKIFNHFATKAEE 306 (329)
Q Consensus 278 a~~e~--~~~--~~~g~~~~d~~f~ry~~~~~~ 306 (329)
+.+|+ .+. +++.++.+=.--.-|.+.++.
T Consensus 246 ~MgEsn~~~~Rn~~l~Ret~vAaaAiY~smya~ 278 (325)
T KOG2940|consen 246 GMGESNAALNRNAILNRETMVAAAAIYQSMYAT 278 (325)
T ss_pred hhcccchhhccCccccHHHHHHHHHHHHHHhcC
Confidence 88875 222 345565554444556666654
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.3e-09 Score=98.47 Aligned_cols=142 Identities=15% Similarity=0.206 Sum_probs=91.6
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccCC
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLFP 122 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lfp 122 (329)
..+|||+|||||.++..+.+ ++ ..+|+.-|+..++....-.. .-++. +++....||
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~--------~~--------~~~v~gvD~S~~Ml~~a~~~-----~~~~~---~d~~~lp~~ 107 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKK--------VF--------KYYVVALDYAENMLKMNLVA-----DDKVV---GSFEALPFR 107 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHH--------hc--------CCEEEEECCCHHHHHHHHhc-----cceEE---echhhCCCC
Confidence 57999999999999887754 21 14799999998887654332 11333 467566689
Q ss_pred CCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCCcc
Q 037735 123 KSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPL 202 (329)
Q Consensus 123 ~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~ 202 (329)
++|+|+++|++++||+.+++ ..|++.++.|+|+ +++.-++.++..
T Consensus 108 d~sfD~v~~~~~l~~~~d~~-------------------------------~~l~e~~RvLkp~--~~ile~~~p~~~-- 152 (226)
T PRK05785 108 DKSFDVVMSSFALHASDNIE-------------------------------KVIAEFTRVSRKQ--VGFIAMGKPDNV-- 152 (226)
T ss_pred CCCEEEEEecChhhccCCHH-------------------------------HHHHHHHHHhcCc--eEEEEeCCCCcH--
Confidence 99999999999999976544 6799999999993 323334444321
Q ss_pred cCCcccchHHHHHHHHHHHH---hcCCcCCCc----------ccCCCHHHHHHHHHhCCce
Q 037735 203 VNNAAGSFYNTFGSCLVELT---KMGILSKEK----------MYNPTPKELEGIIQRNGNF 250 (329)
Q Consensus 203 ~~~~~~~~~~~l~~a~~~l~---~eG~i~~~~----------~y~ps~eE~~~~i~~~g~f 250 (329)
+...+-..|..-+ --++++... --+|+.+|+.+.+++.+.+
T Consensus 153 -------~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~~~ 206 (226)
T PRK05785 153 -------IKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYADI 206 (226)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHhCc
Confidence 1111111111110 112222222 4468999999999987433
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.2e-09 Score=94.41 Aligned_cols=143 Identities=17% Similarity=0.199 Sum_probs=96.9
Q ss_pred EEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC----Ccceeeecccccccccc
Q 037735 45 RIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ----SRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 45 ~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~----~~~~f~~gvpgsFy~~l 120 (329)
+|+|+|||+|..+..+.+ . .|..+++..|+..+.....-+.+.. .+.-|.. +++....
T Consensus 2 ~vLDiGcG~G~~~~~la~--------~-------~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~---~d~~~~~ 63 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAE--------R-------HPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFY---RDSAKDP 63 (224)
T ss_pred eEEEECCCCCHHHHHHHH--------H-------CCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEe---cccccCC
Confidence 699999999998887764 2 2335788999977665544333321 1112333 2443333
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCC
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGI 200 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~ 200 (329)
+| +++|+|+|..++|++.+ +..+|+..++.|+|||++++..+..+...
T Consensus 64 ~~-~~fD~I~~~~~l~~~~~-------------------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~ 111 (224)
T smart00828 64 FP-DTYDLVFGFEVIHHIKD-------------------------------KMDLFSNISRHLKDGGHLVLADFIANLLS 111 (224)
T ss_pred CC-CCCCEeehHHHHHhCCC-------------------------------HHHHHHHHHHHcCCCCEEEEEEcccccCc
Confidence 44 58999999999999643 34889999999999999999876543211
Q ss_pred cccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEeecC
Q 037735 201 PLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMTNP 261 (329)
Q Consensus 201 ~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~~~ 261 (329)
... . +....|+++.+++.+.+++. +|++.+.+.+..+
T Consensus 112 ~~~-------------------~----~~~~~~~~s~~~~~~~l~~~-Gf~~~~~~~~~~~ 148 (224)
T smart00828 112 AIE-------------------H----EETTSYLVTREEWAELLARN-NLRVVEGVDASLE 148 (224)
T ss_pred ccc-------------------c----cccccccCCHHHHHHHHHHC-CCeEEEeEECcHh
Confidence 100 0 00016789999999999988 5999888776443
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=3e-09 Score=99.65 Aligned_cols=152 Identities=12% Similarity=0.107 Sum_probs=98.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~f~~gvpgsFy~ 118 (329)
...+|+|+|||+|..++.+.... .+..+|+..|...++....-+... -.+--|.. +++..
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~--------------g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~---~d~~~ 139 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRV--------------GPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRL---GEIEA 139 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHh--------------CCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEE---cchhh
Confidence 45699999999998877665421 233579999998777665433221 11122333 45644
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCC
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
-.+|++++|+++|+.++||..+. ...|+...+.|+|||+|+++-+....
T Consensus 140 l~~~~~~fD~Vi~~~v~~~~~d~-------------------------------~~~l~~~~r~LkpGG~l~i~~~~~~~ 188 (272)
T PRK11873 140 LPVADNSVDVIISNCVINLSPDK-------------------------------ERVFKEAFRVLKPGGRFAISDVVLRG 188 (272)
T ss_pred CCCCCCceeEEEEcCcccCCCCH-------------------------------HHHHHHHHHHcCCCcEEEEEEeeccC
Confidence 44788999999999999995433 36689999999999999998664332
Q ss_pred CCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 199 GIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
.. .+.+...+.-..... ....+.+|+.++++..| |...++...
T Consensus 189 ~~----------~~~~~~~~~~~~~~~------~~~~~~~e~~~~l~~aG-f~~v~i~~~ 231 (272)
T PRK11873 189 EL----------PEEIRNDAELYAGCV------AGALQEEEYLAMLAEAG-FVDITIQPK 231 (272)
T ss_pred CC----------CHHHHHhHHHHhccc------cCCCCHHHHHHHHHHCC-CCceEEEec
Confidence 11 112222222111111 23468899999999884 887766543
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.3e-09 Score=95.28 Aligned_cols=161 Identities=15% Similarity=0.154 Sum_probs=99.5
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeecccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~l 120 (329)
.+..+|+|+|||+|.++..+.... ++. .|..+++..|+..++....-+.......-+..+.... ..
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~--------~~~---g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~---l~ 124 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWA--------RRD---GLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDE---LV 124 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHH--------HhC---CCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEeccc---cc
Confidence 456799999999999988776422 111 3446899999998876655443322111222222111 12
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCC
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGI 200 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~ 200 (329)
++++++|+++|+.++||+.+. ++..+|+..++.++ |.+++.-+.++..
T Consensus 125 ~~~~~fD~V~~~~~lhh~~d~-----------------------------~~~~~l~~~~r~~~--~~~~i~dl~~~~~- 172 (232)
T PRK06202 125 AEGERFDVVTSNHFLHHLDDA-----------------------------EVVRLLADSAALAR--RLVLHNDLIRSRL- 172 (232)
T ss_pred ccCCCccEEEECCeeecCChH-----------------------------HHHHHHHHHHHhcC--eeEEEeccccCHH-
Confidence 478899999999999998641 34578888888887 6666666665531
Q ss_pred cccCCcccchHHHHHHHHHHHHhcC-CcCCCc----ccCCCHHHHHHHHHhCCceEEeEEEEee
Q 037735 201 PLVNNAAGSFYNTFGSCLVELTKMG-ILSKEK----MYNPTPKELEGIIQRNGNFTIERMEKMT 259 (329)
Q Consensus 201 ~~~~~~~~~~~~~l~~a~~~l~~eG-~i~~~~----~y~ps~eE~~~~i~~~g~f~i~~~e~~~ 259 (329)
.+.... ........| .+..+. .-+++.+|+.+.+++ +|++.+...+.
T Consensus 173 ---------~~~~~~-~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~--Gf~~~~~~~~~ 224 (232)
T PRK06202 173 ---------AYALFW-AGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ--GWRVERQWPFR 224 (232)
T ss_pred ---------HHHHHH-HHHHHhccCceeeccchHHHHhhcCHHHHHHHhhC--CCeEEecccee
Confidence 111111 111111112 222222 456899999999997 69998877654
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.5e-09 Score=102.92 Aligned_cols=151 Identities=15% Similarity=0.140 Sum_probs=94.7
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhh---hhcCCCCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTL---FKSLPQSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~l---f~~l~~~~~~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|..+..++. . .+ -.|+.-|....+..+. -+.+.....+.+ .++++ +
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~--------~-------g~-~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~--~~~~i-e 181 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLG--------H-------GA-KSLVGIDPTVLFLCQFEAVRKLLDNDKRAIL--EPLGI-E 181 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHH--------c-------CC-CEEEEEcCCHHHHHHHHHHHHHhccCCCeEE--EECCH-H
Confidence 346999999999998877653 1 22 2688889776554431 111111111111 22344 4
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCC
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
.+-+.+++|+|+|+.+|+|+.++ ..+|+..++.|+|||.|++.++..+.
T Consensus 182 ~lp~~~~FD~V~s~gvL~H~~dp-------------------------------~~~L~el~r~LkpGG~Lvletl~i~g 230 (314)
T TIGR00452 182 QLHELYAFDTVFSMGVLYHRKSP-------------------------------LEHLKQLKHQLVIKGELVLETLVIDG 230 (314)
T ss_pred HCCCCCCcCEEEEcchhhccCCH-------------------------------HHHHHHHHHhcCCCCEEEEEEEEecC
Confidence 55455689999999999996543 36799999999999999999875432
Q ss_pred CCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 199 GIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
.... .+.. ..-...| .+. .+.||.+++..++++. ||+.+++...
T Consensus 231 ~~~~------~l~p--~~ry~k~--~nv-----~flpS~~~L~~~L~~a-GF~~V~i~~~ 274 (314)
T TIGR00452 231 DLNT------VLVP--KDRYAKM--KNV-----YFIPSVSALKNWLEKV-GFENFRILDV 274 (314)
T ss_pred cccc------ccCc--hHHHHhc--ccc-----ccCCCHHHHHHHHHHC-CCeEEEEEec
Confidence 1100 0000 0001111 011 5568999999999988 4998776643
|
Known examples to date are restricted to the proteobacteria. |
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.1e-09 Score=96.44 Aligned_cols=137 Identities=17% Similarity=0.281 Sum_probs=89.5
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--Ccc-eeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--SRS-YYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--~~~-~f~~gvpgsFy~ 118 (329)
...+|+|+|||+|.++..+.+ + ..+|+.-|+..+....+-+.... ..+ -+.. +++..
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~--------~---------g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~---~d~~~ 89 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAA--------N---------GFDVTAWDKNPMSIANLERIKAAENLDNLHTAV---VDLNN 89 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHH--------C---------CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEe---cChhh
Confidence 347899999999999988864 1 15799999987654443222211 011 1222 34533
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEE-EecccC
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAAL-VMFSVP 197 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~-~~~g~~ 197 (329)
..+ ++++|+|+|+.++||++. .|...+++..++-|+|||++++ ..+...
T Consensus 90 ~~~-~~~fD~I~~~~~~~~~~~-----------------------------~~~~~~l~~i~~~LkpgG~~~~~~~~~~~ 139 (197)
T PRK11207 90 LTF-DGEYDFILSTVVLMFLEA-----------------------------KTIPGLIANMQRCTKPGGYNLIVAAMDTA 139 (197)
T ss_pred CCc-CCCcCEEEEecchhhCCH-----------------------------HHHHHHHHHHHHHcCCCcEEEEEEEecCC
Confidence 223 467999999999999752 2456889999999999999654 444433
Q ss_pred CCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 198 DGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
+. +. ..|. .+..+.+|+.+.++ +|++.+.+.
T Consensus 140 ~~-~~--------------------~~~~-----~~~~~~~el~~~~~---~~~~~~~~~ 170 (197)
T PRK11207 140 DY-PC--------------------TVGF-----PFAFKEGELRRYYE---GWEMVKYNE 170 (197)
T ss_pred CC-CC--------------------CCCC-----CCccCHHHHHHHhC---CCeEEEeeC
Confidence 21 10 0111 34468899998887 499887753
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.2e-09 Score=93.80 Aligned_cols=138 Identities=14% Similarity=0.229 Sum_probs=89.3
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--CCcceeeeccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--QSRSYYAAGVPGSFYSS 119 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~~~~~f~~gvpgsFy~~ 119 (329)
++.+|+|+|||+|.++..+.+ + ..+|+.-|+..++...+-+... .....+.. +++ ..
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~--------~---------g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~---~d~-~~ 88 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSL--------A---------GYDVRAWDHNPASIASVLDMKARENLPLRTDA---YDI-NA 88 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHH--------C---------CCeEEEEECCHHHHHHHHHHHHHhCCCceeEe---ccc-hh
Confidence 357999999999999998874 1 1579999998776655432221 10111122 223 22
Q ss_pred cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCC
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDG 199 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~ 199 (329)
..+++++|+|+|+.++||++. .|+..+++..++-|+|||++++...-..+.
T Consensus 89 ~~~~~~fD~I~~~~~~~~~~~-----------------------------~~~~~~l~~~~~~LkpgG~lli~~~~~~~~ 139 (195)
T TIGR00477 89 AALNEDYDFIFSTVVFMFLQA-----------------------------GRVPEIIANMQAHTRPGGYNLIVAAMDTAD 139 (195)
T ss_pred ccccCCCCEEEEecccccCCH-----------------------------HHHHHHHHHHHHHhCCCcEEEEEEecccCC
Confidence 223468999999999999753 145588999999999999966654332221
Q ss_pred CcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 200 IPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 200 ~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
.+.. ..+ -|-.+++|+.+.+. .|++.+.+.
T Consensus 140 ~~~~-----~~~--------------------~~~~~~~el~~~f~---~~~~~~~~e 169 (195)
T TIGR00477 140 YPCH-----MPF--------------------SFTFKEDELRQYYA---DWELLKYNE 169 (195)
T ss_pred CCCC-----CCc--------------------CccCCHHHHHHHhC---CCeEEEeec
Confidence 1100 000 34578999999885 288887774
|
Part of a tellurite-reducing operon tehA and tehB |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.5e-09 Score=95.26 Aligned_cols=173 Identities=17% Similarity=0.190 Sum_probs=115.1
Q ss_pred CCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC-----CCC-cceeeeccc
Q 037735 40 VPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL-----PQS-RSYYAAGVP 113 (329)
Q Consensus 40 ~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l-----~~~-~~~f~~gvp 113 (329)
+.+..+++|++||||..|+.+++.+ ....+ .-+-+|+..|+..++.+---+.- ... +-.|++|
T Consensus 98 p~~~m~~lDvaGGTGDiaFril~~v--------~s~~~-~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~-- 166 (296)
T KOG1540|consen 98 PGKGMKVLDVAGGTGDIAFRILRHV--------KSQFG-DRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEG-- 166 (296)
T ss_pred CCCCCeEEEecCCcchhHHHHHHhh--------ccccC-CCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeC--
Confidence 3456899999999999999998744 11111 22468999999988877643322 111 1345554
Q ss_pred cccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 114 GSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 114 gsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
+.....||++++|...+++.+--+.+++ +-|++.+|.|||||++.+.-
T Consensus 167 -dAE~LpFdd~s~D~yTiafGIRN~th~~-------------------------------k~l~EAYRVLKpGGrf~cLe 214 (296)
T KOG1540|consen 167 -DAEDLPFDDDSFDAYTIAFGIRNVTHIQ-------------------------------KALREAYRVLKPGGRFSCLE 214 (296)
T ss_pred -CcccCCCCCCcceeEEEecceecCCCHH-------------------------------HHHHHHHHhcCCCcEEEEEE
Confidence 6866669999999999999999877766 44999999999999999999
Q ss_pred cccCCCCcccCCcccchHH---HHHHHHHHHHhcCCcCCCc-ccCCCHHHHHHHHHhCCceEEeE-EE
Q 037735 194 FSVPDGIPLVNNAAGSFYN---TFGSCLVELTKMGILSKEK-MYNPTPKELEGIIQRNGNFTIER-ME 256 (329)
Q Consensus 194 ~g~~~~~~~~~~~~~~~~~---~l~~a~~~l~~eG~i~~~~-~y~ps~eE~~~~i~~~g~f~i~~-~e 256 (329)
|..-+..++........++ .+.+.+......+..=.+. --+|+.||+...+++.| |.... .|
T Consensus 215 Fskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaG-F~~~~~ye 281 (296)
T KOG1540|consen 215 FSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAG-FSSVNGYE 281 (296)
T ss_pred ccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcC-Cccccccc
Confidence 8876633221111222222 2233333332333111111 55799999999999984 88775 54
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.9e-09 Score=93.68 Aligned_cols=140 Identities=20% Similarity=0.149 Sum_probs=100.3
Q ss_pred cchHHHhHH---HHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceE
Q 037735 8 HSYASNSAY---QSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQV 84 (329)
Q Consensus 8 ~sY~~nS~~---Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v 84 (329)
.-|.+|+.+ |..+.+++++++.- + .+++.-|||+|||||--+..+- .+.-++
T Consensus 21 ~kYt~nsri~~IQ~em~eRaLELLal--p------~~~~~~iLDIGCGsGLSg~vL~-----------------~~Gh~w 75 (270)
T KOG1541|consen 21 PKYTQNSRIVLIQAEMAERALELLAL--P------GPKSGLILDIGCGSGLSGSVLS-----------------DSGHQW 75 (270)
T ss_pred hhccccceeeeehHHHHHHHHHHhhC--C------CCCCcEEEEeccCCCcchheec-----------------cCCceE
Confidence 457888865 77777887777661 1 2357889999999998766653 334689
Q ss_pred EecCCCcchHHhhh-hcCCCCcceeeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHH
Q 037735 85 FFNDHSDNDFNTLF-KSLPQSRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEA 163 (329)
Q Consensus 85 ~~nDLp~ndfn~lf-~~l~~~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~a 163 (329)
+-.|....|....- +.+.. . ++.+.=| .+-.|+++++|-++|-+|+|||-+...+.-|.
T Consensus 76 iGvDiSpsML~~a~~~e~eg--d-lil~DMG--~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P--------------- 135 (270)
T KOG1541|consen 76 IGVDISPSMLEQAVERELEG--D-LILCDMG--EGLPFRPGTFDGVISISAVQWLCNADKSLHVP--------------- 135 (270)
T ss_pred EeecCCHHHHHHHHHhhhhc--C-eeeeecC--CCCCCCCCccceEEEeeeeeeecccCccccCh---------------
Confidence 99999988877755 33331 1 2222222 35569999999999999999987654331111
Q ss_pred HHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 164 YAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 164 y~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
++.+.+|+..-...|++|++-++.+.-..
T Consensus 136 -----~~Rl~~FF~tLy~~l~rg~raV~QfYpen 164 (270)
T KOG1541|consen 136 -----KKRLLRFFGTLYSCLKRGARAVLQFYPEN 164 (270)
T ss_pred -----HHHHHHHhhhhhhhhccCceeEEEecccc
Confidence 45678999999999999999999886443
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.7e-08 Score=94.87 Aligned_cols=102 Identities=23% Similarity=0.273 Sum_probs=72.4
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccC
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLF 121 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lf 121 (329)
...+|+|+|||+|..+..+.+.+ +. ....+++..|+..++....-+..+. ..|..+ +..+-.|
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~--------~~----~~~~~v~giD~s~~~l~~A~~~~~~--~~~~~~---d~~~lp~ 147 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADAL--------PE----ITTMQLFGLDISKVAIKYAAKRYPQ--VTFCVA---SSHRLPF 147 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhc--------cc----ccCCeEEEECCCHHHHHHHHHhCCC--CeEEEe---ecccCCC
Confidence 44689999999999998887522 11 1114799999998877766554432 234443 4545568
Q ss_pred CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCC
Q 037735 122 PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 122 p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
+++++|+|+|..+ |.. ++.-++.|+|||+|++..++..+
T Consensus 148 ~~~sfD~I~~~~~-------~~~-------------------------------~~e~~rvLkpgG~li~~~p~~~~ 186 (272)
T PRK11088 148 ADQSLDAIIRIYA-------PCK-------------------------------AEELARVVKPGGIVITVTPGPRH 186 (272)
T ss_pred cCCceeEEEEecC-------CCC-------------------------------HHHHHhhccCCCEEEEEeCCCcc
Confidence 8999999998754 322 56677899999999999887654
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.5e-09 Score=84.65 Aligned_cols=96 Identities=22% Similarity=0.222 Sum_probs=54.8
Q ss_pred EeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---CcceeeeccccccccccCCC
Q 037735 47 ADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---SRSYYAAGVPGSFYSSLFPK 123 (329)
Q Consensus 47 aDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~~~~f~~gvpgsFy~~lfp~ 123 (329)
+|+|||+|.++..++. . .|..+++..|....+....-+.+.. .....+.....+.. ...+.
T Consensus 1 LdiGcG~G~~~~~l~~--------~-------~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 64 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLE--------E-------LPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLF-DYDPP 64 (99)
T ss_dssp -EESTTTS-TTTTHHH--------H-------C-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS----CCC-
T ss_pred CEeCccChHHHHHHHH--------h-------CCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChh-hcccc
Confidence 6999999999999986 2 2447999999998887443333221 11112222222221 12233
Q ss_pred CceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceE
Q 037735 124 SSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLA 189 (329)
Q Consensus 124 ~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l 189 (329)
+++|+|+++.++||+ + |+..+|+..++-|+|||+|
T Consensus 65 ~~fD~V~~~~vl~~l---~----------------------------~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 65 ESFDLVVASNVLHHL---E----------------------------DIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---SEEEEE-TTS-----S-----------------------------HHHHHHHHTTT-TSS-EE
T ss_pred cccceehhhhhHhhh---h----------------------------hHHHHHHHHHHHcCCCCCC
Confidence 799999999999998 3 4568899999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.1e-09 Score=88.36 Aligned_cols=105 Identities=18% Similarity=0.233 Sum_probs=77.7
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhh---cCCCCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFK---SLPQSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~---~l~~~~~~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|..+..+.+.. .|..+++..|+...+.+..-+ ...-..-.|..+ ++.+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~--------------~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~---d~~~ 65 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKEL--------------NPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQG---DIED 65 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHS--------------TTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEES---BTTC
T ss_pred CCCEEEEecCcCcHHHHHHHHhc--------------CCCCEEEEEECcHHHHHHhhcccccccccccceEEe---ehhc
Confidence 45899999999999999987411 344689999999877666533 333323345655 4533
Q ss_pred --ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 119 --SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 119 --~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
+.++ +.+|+|+++.++||+.+ ...+|+...+-|++||.++++.+.
T Consensus 66 l~~~~~-~~~D~I~~~~~l~~~~~-------------------------------~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 66 LPQELE-EKFDIIISNGVLHHFPD-------------------------------PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp GCGCSS-TTEEEEEEESTGGGTSH-------------------------------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cccccC-CCeeEEEEcCchhhccC-------------------------------HHHHHHHHHHHcCCCcEEEEEECC
Confidence 1134 89999999999999653 347799999999999999999887
|
... |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.4e-08 Score=94.74 Aligned_cols=137 Identities=17% Similarity=0.244 Sum_probs=89.7
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--Ccceeeecccccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--SRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--~~~~f~~gvpgsFy~~l 120 (329)
+.+|+|+|||+|.++..+.+ + ..+|+.-|........+-+.... ..--+.. +++. ..
T Consensus 121 ~~~vLDlGcG~G~~~~~la~--------~---------g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~---~D~~-~~ 179 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLAL--------L---------GFDVTAVDINQQSLENLQEIAEKENLNIRTGL---YDIN-SA 179 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHH--------C---------CCEEEEEECCHHHHHHHHHHHHHcCCceEEEE---echh-cc
Confidence 35899999999999988864 1 25899999987665543322211 0111122 2332 22
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCC
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGI 200 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~ 200 (329)
-+++++|+|+|+.++|+++. .++..+|+...+.|+|||++++...-..+..
T Consensus 180 ~~~~~fD~I~~~~vl~~l~~-----------------------------~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~ 230 (287)
T PRK12335 180 SIQEEYDFILSTVVLMFLNR-----------------------------ERIPAIIKNMQEHTNPGGYNLIVCAMDTEDY 230 (287)
T ss_pred cccCCccEEEEcchhhhCCH-----------------------------HHHHHHHHHHHHhcCCCcEEEEEEecccccC
Confidence 23788999999999999752 2566889999999999999777554322211
Q ss_pred cccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 201 PLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 201 ~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
+.. .-+ .+..+.+|+++.+.. |+|.+.++
T Consensus 231 ~~~-----~p~--------------------~~~~~~~el~~~~~~---~~i~~~~e 259 (287)
T PRK12335 231 PCP-----MPF--------------------SFTFKEGELKDYYQD---WEIVKYNE 259 (287)
T ss_pred CCC-----CCC--------------------CcccCHHHHHHHhCC---CEEEEEec
Confidence 100 000 455789999998763 99988753
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.3e-07 Score=86.68 Aligned_cols=170 Identities=18% Similarity=0.230 Sum_probs=100.2
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CCC-cceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQS-RSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~~-~~~f~~gvpgsFy 117 (329)
+-.+|||+|||-|..++.+.+ +| ..+|....+..+....+-+.+ .-. +.-+..+ +|
T Consensus 62 ~G~~vLDiGcGwG~~~~~~a~--------~~--------g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~---D~- 121 (273)
T PF02353_consen 62 PGDRVLDIGCGWGGLAIYAAE--------RY--------GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQ---DY- 121 (273)
T ss_dssp TT-EEEEES-TTSHHHHHHHH--------HH----------EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES----G-
T ss_pred CCCEEEEeCCCccHHHHHHHH--------Hc--------CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEe---ec-
Confidence 347999999999999999886 33 157888888876655543222 211 1223333 44
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
..+ +. ++|-|+|--++.-+ + .+++..||+..++-|+|||++++..++..
T Consensus 122 ~~~-~~-~fD~IvSi~~~Ehv---g--------------------------~~~~~~~f~~~~~~LkpgG~~~lq~i~~~ 170 (273)
T PF02353_consen 122 RDL-PG-KFDRIVSIEMFEHV---G--------------------------RKNYPAFFRKISRLLKPGGRLVLQTITHR 170 (273)
T ss_dssp GG-----S-SEEEEESEGGGT---C--------------------------GGGHHHHHHHHHHHSETTEEEEEEEEEE-
T ss_pred ccc-CC-CCCEEEEEechhhc---C--------------------------hhHHHHHHHHHHHhcCCCcEEEEEecccc
Confidence 232 32 89999999887664 2 24677999999999999999999988766
Q ss_pred CCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEeecCcccccccHHHHhhhHh
Q 037735 198 DGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMTNPKQQVLCSASDLAVAMR 277 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~~~~~~~~~~~~~~~~~iR 277 (329)
+.....+.....-| ++.=+=-| -+.|+.+|+...+++. +|+|.+.+.. +..++.++|
T Consensus 171 ~~~~~~~~~~~~~~------i~kyiFPg------g~lps~~~~~~~~~~~-~l~v~~~~~~----------~~hY~~Tl~ 227 (273)
T PF02353_consen 171 DPPYHAERRSSSDF------IRKYIFPG------GYLPSLSEILRAAEDA-GLEVEDVENL----------GRHYARTLR 227 (273)
T ss_dssp -HHHHHCTTCCCHH------HHHHTSTT------S---BHHHHHHHHHHT-T-EEEEEEE-----------HHHHHHHHH
T ss_pred cccchhhcCCCceE------EEEeeCCC------CCCCCHHHHHHHHhcC-CEEEEEEEEc----------CcCHHHHHH
Confidence 53211000000000 12111123 4679999999988877 5999887766 456777888
Q ss_pred hhhhhHHh
Q 037735 278 AVYEGLVK 285 (329)
Q Consensus 278 a~~e~~~~ 285 (329)
+|.+.+.+
T Consensus 228 ~W~~~f~~ 235 (273)
T PF02353_consen 228 AWRENFDA 235 (273)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87776654
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.3e-08 Score=91.66 Aligned_cols=141 Identities=15% Similarity=0.092 Sum_probs=88.8
Q ss_pred HHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHH
Q 037735 16 YQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFN 95 (329)
Q Consensus 16 ~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn 95 (329)
+|+.+.....|.+-.........+.....+|+|+|||+|..|..+.+ . .|..+++..|....+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDiGcGtG~~~~~la~--------~-------~p~~~v~gVD~s~~~i~ 78 (202)
T PRK00121 14 GQQRAIEELWPRLSPAPLDWAELFGNDAPIHLEIGFGKGEFLVEMAK--------A-------NPDINFIGIEVHEPGVG 78 (202)
T ss_pred chhhhhcccchhhcCCCCCHHHHcCCCCCeEEEEccCCCHHHHHHHH--------H-------CCCccEEEEEechHHHH
Confidence 45555555555553221111111233567899999999999998864 2 24468999999887777
Q ss_pred hhhhcCC---CCcceeeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcH
Q 037735 96 TLFKSLP---QSRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDF 172 (329)
Q Consensus 96 ~lf~~l~---~~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~ 172 (329)
.+-+.+. ..+-.|..+..-..+.+.++++++|.+++++..+|....... . +.+.
T Consensus 79 ~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~~----~-------------------~~~~ 135 (202)
T PRK00121 79 KALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHHK----R-------------------RLVQ 135 (202)
T ss_pred HHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEECCCCCCCccccc----c-------------------ccCC
Confidence 6654331 112234554320112344788999999999988886532210 0 0123
Q ss_pred HHHHHHHHHHhccCceEEEEec
Q 037735 173 QTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 173 ~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
..||+.-++.|+|||.+++++.
T Consensus 136 ~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 136 PEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred HHHHHHHHHHcCCCCEEEEEcC
Confidence 5789999999999999999873
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.8e-08 Score=80.98 Aligned_cols=104 Identities=21% Similarity=0.235 Sum_probs=74.9
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---C-CCcceeeecccccc-c
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---P-QSRSYYAAGVPGSF-Y 117 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~-~~~~~f~~gvpgsF-y 117 (329)
..+|+|+|||+|..++.+.+ + .|..+++.-|.........-+.. . ..+-.|..+ ++ +
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~--------~-------~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~---d~~~ 63 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALAR--------L-------FPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQG---DAEF 63 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHH--------H-------HTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEES---CCHG
T ss_pred CCEEEEEcCcCCHHHHHHHh--------c-------CCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEEC---cccc
Confidence 36899999999999999985 2 24578999999887777765555 1 122335554 45 2
Q ss_pred cccCCCCceeEEEecc-ceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 118 SSLFPKSSLHFVHSSY-TLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~-alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
..- ..+.+|+++++. ++|++-.. .+..++|+...+.|+|||+|++..
T Consensus 64 ~~~-~~~~~D~v~~~~~~~~~~~~~----------------------------~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 64 DPD-FLEPFDLVICSGFTLHFLLPL----------------------------DERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GTT-TSSCEEEEEECSGSGGGCCHH----------------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred Ccc-cCCCCCEEEECCCccccccch----------------------------hHHHHHHHHHHHhcCCCcEEEEEE
Confidence 222 334599999999 77754321 255688999999999999999975
|
... |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.4e-08 Score=103.49 Aligned_cols=113 Identities=22% Similarity=0.157 Sum_probs=80.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC--cceeeecccccccc-
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS--RSYYAAGVPGSFYS- 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~--~~~f~~gvpgsFy~- 118 (329)
+..+|+|+|||+|..+..+.. + .|..+++..|++.++....-+.++.. +..++.| +...
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~--------~-------~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~g---Da~dL 479 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEE--------E-------TEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKG---DAINL 479 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHH--------h-------CCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEc---chHhC
Confidence 357999999999988877654 2 34579999999998877665443221 1223444 3322
Q ss_pred -ccCCCCceeEEEeccceecc-cCCCCC--CCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 119 -SLFPKSSLHFVHSSYTLHWL-SKVPKV--DGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 119 -~lfp~~s~dl~~Ss~alhWL-s~~p~~--~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
..||++++|++++++++||+ +.+|.. .++ .+|...+|+...+.|+|||.+++.-
T Consensus 480 p~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~---------------------~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 480 SSSFEKESVDTIVYSSILHELFSYIEYEGKKFN---------------------HEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred ccccCCCCEEEEEEchHHHhhhhhccccccccc---------------------HHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 23789999999999999965 445522 011 1467799999999999999999963
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.9e-07 Score=84.96 Aligned_cols=221 Identities=13% Similarity=0.160 Sum_probs=135.0
Q ss_pred HHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchH
Q 037735 15 AYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDF 94 (329)
Q Consensus 15 ~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndf 94 (329)
..|.+.++.+...+. -.+-.+|||||||-|..++.+++ +| ...|+..+|..|..
T Consensus 55 eAQ~~k~~~~~~kl~----------L~~G~~lLDiGCGWG~l~~~aA~--------~y--------~v~V~GvTlS~~Q~ 108 (283)
T COG2230 55 EAQRAKLDLILEKLG----------LKPGMTLLDIGCGWGGLAIYAAE--------EY--------GVTVVGVTLSEEQL 108 (283)
T ss_pred HHHHHHHHHHHHhcC----------CCCCCEEEEeCCChhHHHHHHHH--------Hc--------CCEEEEeeCCHHHH
Confidence 455555555444433 23458999999999999999886 33 26899999998887
Q ss_pred HhhhhcC---CCCcc--eeeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHh
Q 037735 95 NTLFKSL---PQSRS--YYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFN 169 (329)
Q Consensus 95 n~lf~~l---~~~~~--~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~ 169 (329)
...-+.+ .-..+ +-..+ + .- | ++.+|=|+|.=+++-+..
T Consensus 109 ~~~~~r~~~~gl~~~v~v~l~d----~-rd-~-~e~fDrIvSvgmfEhvg~----------------------------- 152 (283)
T COG2230 109 AYAEKRIAARGLEDNVEVRLQD----Y-RD-F-EEPFDRIVSVGMFEHVGK----------------------------- 152 (283)
T ss_pred HHHHHHHHHcCCCcccEEEecc----c-cc-c-ccccceeeehhhHHHhCc-----------------------------
Confidence 7654432 11111 11221 1 11 1 222888888888887653
Q ss_pred hcHHHHHHHHHHHhccCceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCc
Q 037735 170 NDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGN 249 (329)
Q Consensus 170 ~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~ 249 (329)
+-+..||+...+-|+|||+|++-.++..+.... . ..-| +..-+=-| -++|+..++.....+. +
T Consensus 153 ~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-~---~~~~------i~~yiFPg------G~lPs~~~i~~~~~~~-~ 215 (283)
T COG2230 153 ENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR-R---FPDF------IDKYIFPG------GELPSISEILELASEA-G 215 (283)
T ss_pred ccHHHHHHHHHhhcCCCceEEEEEecCCCcccc-c---chHH------HHHhCCCC------CcCCCHHHHHHHHHhc-C
Confidence 235699999999999999999999987653210 0 0011 12222223 5779999999998877 5
Q ss_pred eEEeEEEEeecCcccccccHHHHhhhHhhhhhhHHhhhcC---hHHHHHHHHHHHHHHHHhhhhhhhhcCCCceEEEEEE
Q 037735 250 FTIERMEKMTNPKQQVLCSASDLAVAMRAVYEGLVKEHFG---DEFVDKIFNHFATKAEENISIIGQRVQDSMMDLFILL 326 (329)
Q Consensus 250 f~i~~~e~~~~~~~~~~~~~~~~~~~iRa~~e~~~~~~~g---~~~~d~~f~ry~~~~~~~~~~~~~~~~~~~~~~~~~L 326 (329)
|.+...+.+. ..++.+++.|-+.+-. ++. ...-+.++.+|+..++.....+ +....-...++|
T Consensus 216 ~~v~~~~~~~----------~hYa~Tl~~W~~~f~~-~~~~a~~~~~e~~~r~w~~yl~~~~~~F---r~~~~~~~q~~~ 281 (283)
T COG2230 216 FVVLDVESLR----------PHYARTLRLWRERFEA-NRDEAIALYDERFYRMWELYLAACAAAF---RAGYIDVFQFTL 281 (283)
T ss_pred cEEehHhhhc----------HHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHh---ccCCceEEEEEe
Confidence 8887666553 3467777777765433 232 2233444555666666656555 333333333555
Q ss_pred Ee
Q 037735 327 KR 328 (329)
Q Consensus 327 ~r 328 (329)
+|
T Consensus 282 ~k 283 (283)
T COG2230 282 TK 283 (283)
T ss_pred eC
Confidence 43
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.4e-07 Score=83.74 Aligned_cols=153 Identities=18% Similarity=0.186 Sum_probs=93.3
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--C-cceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--S-RSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--~-~~~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|..+..+.+ . . ..++..|+........-+.+.. . ...|..+ ++-+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~--------~-------~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~---d~~~ 104 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLAR--------L-------G--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCT---SVED 104 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHh--------c-------C--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeC---CHHH
Confidence 467999999999998877653 1 1 3588899876654443332211 1 1223332 3422
Q ss_pred ccCC-CCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 119 SLFP-KSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 119 ~lfp-~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
...+ ++++|+++++.++|+..++ ..+|+...+-|+|||.++++...++
T Consensus 105 ~~~~~~~~~D~i~~~~~l~~~~~~-------------------------------~~~l~~~~~~L~~gG~l~i~~~~~~ 153 (224)
T TIGR01983 105 LAEKGAKSFDVVTCMEVLEHVPDP-------------------------------QAFIRACAQLLKPGGILFFSTINRT 153 (224)
T ss_pred hhcCCCCCccEEEehhHHHhCCCH-------------------------------HHHHHHHHHhcCCCcEEEEEecCCC
Confidence 2322 4789999999999986533 3789999999999999998876433
Q ss_pred CCCcccCCcccchHHHHHHHHHHHHhcCCcCCCc---ccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 198 DGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEK---MYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~---~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
... .+..+.. .++.. +...... ..+.+.+++.++++.. +|+|..+..+
T Consensus 154 ~~~---------~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~-G~~i~~~~~~ 204 (224)
T TIGR01983 154 PKS---------YLLAIVG--AEYIL-RIVPKGTHDWEKFIKPSELTSWLESA-GLRVKDVKGL 204 (224)
T ss_pred chH---------HHHHHHh--hhhhh-hcCCCCcCChhhcCCHHHHHHHHHHc-CCeeeeeeeE
Confidence 110 1111000 11111 1111111 2356889999999977 5999887754
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.4e-07 Score=85.17 Aligned_cols=191 Identities=17% Similarity=0.214 Sum_probs=108.5
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccc-----
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFY----- 117 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy----- 117 (329)
...+.|+|||+|..++.+.. . ++ +|+..|..+.+.+-+-+.-+. .|.- +|-++-
T Consensus 34 h~~a~DvG~G~Gqa~~~iae--------~--------~k-~VIatD~s~~mL~~a~k~~~~--~y~~--t~~~ms~~~~v 92 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAE--------H--------YK-EVIATDVSEAMLKVAKKHPPV--TYCH--TPSTMSSDEMV 92 (261)
T ss_pred cceEEEeccCCCcchHHHHH--------h--------hh-hheeecCCHHHHHHhhcCCCc--cccc--CCccccccccc
Confidence 34889999999965555543 2 22 799999999887744333221 1111 222222
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
..+=+++|||+|++.-|+||+ |+.+|++.-.+.|++.|-++....=++
T Consensus 93 ~L~g~e~SVDlI~~Aqa~HWF--------------------------------dle~fy~~~~rvLRk~Gg~iavW~Y~d 140 (261)
T KOG3010|consen 93 DLLGGEESVDLITAAQAVHWF--------------------------------DLERFYKEAYRVLRKDGGLIAVWNYND 140 (261)
T ss_pred cccCCCcceeeehhhhhHHhh--------------------------------chHHHHHHHHHHcCCCCCEEEEEEccC
Confidence 333469999999999999996 566999999999999997666665554
Q ss_pred CCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCc---eEEeEEEEeec--C-ccccc--ccH
Q 037735 198 DGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGN---FTIERMEKMTN--P-KQQVL--CSA 269 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~---f~i~~~e~~~~--~-~~~~~--~~~ 269 (329)
+... |.+.-.....+....+ -|+ ...+...+.+.-. |..+++..... + .+..+ +.-
T Consensus 141 d~v~---------~pE~dsv~~r~~~~~~-----p~~--r~~~~n~~fdgy~~~~F~~e~v~~~s~~~~~~l~~~~~lsl 204 (261)
T KOG3010|consen 141 DFVD---------WPEFDSVMLRLYDSTL-----PYW--RSPLRNLLFDGYKTIEFPFESVGMGSQGKPKTLEIPHTLSL 204 (261)
T ss_pred CCcC---------CHHHHHHHHHHhhccC-----chh--hhHHHHhhccccccccccccccCCCCCCCceeehhhHHHHH
Confidence 4332 2222223333333221 343 2223333332211 33333222110 0 11111 123
Q ss_pred HHHhhhHhhhhhhHHhhhcCh-HHHHHHHHHHHH
Q 037735 270 SDLAVAMRAVYEGLVKEHFGD-EFVDKIFNHFAT 302 (329)
Q Consensus 270 ~~~~~~iRa~~e~~~~~~~g~-~~~d~~f~ry~~ 302 (329)
..++.++|+|..-.-++|=|. .+.+.+-.+++.
T Consensus 205 ~~F~~~~rsws~~~~akek~~e~i~~~~I~e~~~ 238 (261)
T KOG3010|consen 205 EGFSGFLRSWSAYKEAKEKGLELIADIFIPEFEE 238 (261)
T ss_pred HHHHHHHhCcHHHHHHHhcChHHHHHHHHHHHHh
Confidence 558899999998777777664 344446555544
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.4e-07 Score=85.45 Aligned_cols=90 Identities=16% Similarity=0.139 Sum_probs=63.7
Q ss_pred hHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC
Q 037735 24 LRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ 103 (329)
Q Consensus 24 ~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~ 103 (329)
...++.+.+..+ ++..+|+|+|||+|.++..+.. . .|..+++..|+..++....-+.++.
T Consensus 30 ~~~~~~~~l~~~-----~~~~~VLDiGCG~G~~~~~L~~--------~-------~~~~~v~giDiS~~~l~~A~~~~~~ 89 (204)
T TIGR03587 30 KLAMFARALNRL-----PKIASILELGANIGMNLAALKR--------L-------LPFKHIYGVEINEYAVEKAKAYLPN 89 (204)
T ss_pred HHHHHHHHHHhc-----CCCCcEEEEecCCCHHHHHHHH--------h-------CCCCeEEEEECCHHHHHHHHhhCCC
Confidence 444555555443 3457899999999999988864 1 2346899999998887766554443
Q ss_pred CcceeeeccccccccccCCCCceeEEEeccceeccc
Q 037735 104 SRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLS 139 (329)
Q Consensus 104 ~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs 139 (329)
.-+.. +++.+ .+|++++|+|+++.+||+++
T Consensus 90 --~~~~~---~d~~~-~~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 90 --INIIQ---GSLFD-PFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred --CcEEE---eeccC-CCCCCCEEEEEECChhhhCC
Confidence 12333 35655 78999999999999998764
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.8e-07 Score=82.03 Aligned_cols=154 Identities=14% Similarity=0.124 Sum_probs=93.0
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--CCcceeeeccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--QSRSYYAAGVPGSFYSS 119 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~~~~~f~~gvpgsFy~~ 119 (329)
+..+|+|+|||+|..+..+.+ . ..+++..|+..+.....-+.+. ....-+..+ ++-..
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~--------~---------~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ 107 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMAR--------L---------GADVTGIDASEENIEVARLHALESGLKIDYRQT---TAEEL 107 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHH--------c---------CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEec---CHHHh
Confidence 457899999999998776643 1 1368888987665443322211 111112222 23222
Q ss_pred c-CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCC
Q 037735 120 L-FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 120 l-fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
+ .+++.+|+++++..+++..+. ..+|+...+-|+|||+|+++.+++..
T Consensus 108 ~~~~~~~fD~Ii~~~~l~~~~~~-------------------------------~~~l~~~~~~L~~gG~l~v~~~~~~~ 156 (233)
T PRK05134 108 AAEHPGQFDVVTCMEMLEHVPDP-------------------------------ASFVRACAKLVKPGGLVFFSTLNRNL 156 (233)
T ss_pred hhhcCCCccEEEEhhHhhccCCH-------------------------------HHHHHHHHHHcCCCcEEEEEecCCCh
Confidence 2 356899999999988885432 36799999999999999998775432
Q ss_pred CCcccCCcccchHHHHHHHHHHHHhcCCcCC-Cc-ccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 199 GIPLVNNAAGSFYNTFGSCLVELTKMGILSK-EK-MYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~-~~-~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
.. ..+.... .+.+..++-.. .. ..+.+++|+.++++.. +|+++.....
T Consensus 157 ~~--------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gf~~v~~~~~ 206 (233)
T PRK05134 157 KS--------YLLAIVG---AEYVLRMLPKGTHDYKKFIKPSELAAWLRQA-GLEVQDITGL 206 (233)
T ss_pred HH--------HHHHHhh---HHHHhhhcCcccCchhhcCCHHHHHHHHHHC-CCeEeeeeeE
Confidence 10 0111110 11111111111 11 4567899999999988 5999877643
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.7e-07 Score=87.15 Aligned_cols=153 Identities=10% Similarity=0.125 Sum_probs=92.6
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---Ccceeeeccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---SRSYYAAGVPGSFY 117 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~~~~f~~gvpgsFy 117 (329)
.+..+|+|+|||+|..+..+.+ + .|..+++.-|+| ......-+.+.. ...+ ..++|+|+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~--------~-------~p~~~~~~~D~~-~~~~~a~~~~~~~gl~~rv--~~~~~d~~ 209 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLK--------H-------FPELDSTILNLP-GAIDLVNENAAEKGVADRM--RGIAVDIY 209 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHH--------H-------CCCCEEEEEecH-HHHHHHHHHHHhCCccceE--EEEecCcc
Confidence 3457999999999998888875 3 356788888996 344333222211 1122 22456888
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
+..+|+ .|+++.+..+|-.++. +-..+|+..++.|+|||++++.=+-.+
T Consensus 210 ~~~~~~--~D~v~~~~~lh~~~~~-----------------------------~~~~il~~~~~~L~pgG~l~i~d~~~~ 258 (306)
T TIGR02716 210 KESYPE--ADAVLFCRILYSANEQ-----------------------------LSTIMCKKAFDAMRSGGRLLILDMVID 258 (306)
T ss_pred CCCCCC--CCEEEeEhhhhcCChH-----------------------------HHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 655664 5999888888842211 224679999999999999999855333
Q ss_pred CCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeE
Q 037735 198 DGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIER 254 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~ 254 (329)
+... ..+..+...+.. .|+... -..+++.+|+.+++++.| |+..+
T Consensus 259 ~~~~-------~~~~~~~~~~~~---~~~~~~-~~~~~~~~e~~~ll~~aG-f~~v~ 303 (306)
T TIGR02716 259 DPEN-------PNFDYLSHYILG---AGMPFS-VLGFKEQARYKEILESLG-YKDVT 303 (306)
T ss_pred CCCC-------chhhHHHHHHHH---cccccc-cccCCCHHHHHHHHHHcC-CCeeE
Confidence 2111 011222222111 121100 023466899999999984 87554
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=98.64 E-value=6.1e-08 Score=97.88 Aligned_cols=102 Identities=15% Similarity=0.108 Sum_probs=73.3
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC-cceeeeccccccc--cc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS-RSYYAAGVPGSFY--SS 119 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~-~~~f~~gvpgsFy--~~ 119 (329)
..+|+|+|||+|.+|..+.. .+ .+|+..|+..++.....+..+.. ...|+.+ ++. ..
T Consensus 38 ~~~vLDlGcG~G~~~~~la~--------~~---------~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~---d~~~~~~ 97 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAK--------KA---------GQVIALDFIESVIKKNESINGHYKNVKFMCA---DVTSPDL 97 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHh--------hC---------CEEEEEeCCHHHHHHHHHHhccCCceEEEEe---ccccccc
Confidence 45899999999999999874 11 37899998877665432211111 1234444 343 23
Q ss_pred cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
.+|++++|+|+|+.++||+++. ++..+|+..++.|+|||.|++.=
T Consensus 98 ~~~~~~fD~I~~~~~l~~l~~~-----------------------------~~~~~l~~~~r~Lk~gG~l~~~d 142 (475)
T PLN02336 98 NISDGSVDLIFSNWLLMYLSDK-----------------------------EVENLAERMVKWLKVGGYIFFRE 142 (475)
T ss_pred CCCCCCEEEEehhhhHHhCCHH-----------------------------HHHHHHHHHHHhcCCCeEEEEEe
Confidence 3788999999999999998541 35688999999999999998853
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.9e-07 Score=87.78 Aligned_cols=114 Identities=17% Similarity=0.287 Sum_probs=73.9
Q ss_pred CCceEEEeeeCCCCcc----cHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---------C--c
Q 037735 41 PNTFRIADFGCSTGPN----TFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---------S--R 105 (329)
Q Consensus 41 ~~~~~IaDlGCstG~n----T~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---------~--~ 105 (329)
..+.+|+|+|||||.- ++.+.+ .+... ..+.++|+..|+...+....-+...+ . .
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e--------~~~~~--~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~ 167 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAE--------TLPKA--REPDVKILATDIDLKALEKARAGIYPERELEDLPKALLA 167 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHH--------Hhhhc--CCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHh
Confidence 3569999999999974 333332 11110 12357999999998877665443321 0 1
Q ss_pred ceeeec----------------cccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHh
Q 037735 106 SYYAAG----------------VPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFN 169 (329)
Q Consensus 106 ~~f~~g----------------vpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~ 169 (329)
.||... ..++..+..+|.+++|+|+|.++|||+++.
T Consensus 168 ~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~---------------------------- 219 (264)
T smart00138 168 RYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEP---------------------------- 219 (264)
T ss_pred hhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHH----------------------------
Confidence 233211 011332333568899999999999998632
Q ss_pred hcHHHHHHHHHHHhccCceEEEEe
Q 037735 170 NDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 170 ~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
+..++|+.-++.|+|||+|+++-
T Consensus 220 -~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 220 -TQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred -HHHHHHHHHHHHhCCCeEEEEEC
Confidence 33478999999999999999753
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.9e-07 Score=82.77 Aligned_cols=111 Identities=18% Similarity=0.204 Sum_probs=73.8
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccc---
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSS--- 119 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~--- 119 (329)
..+|+|+|||||..|..+++.. .+.-+|+.-|+.. .+ .+++ -.++.| ++...
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~--------------~~~~~V~aVDi~~--~~----~~~~--v~~i~~---D~~~~~~~ 106 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQI--------------GDKGRVIACDILP--MD----PIVG--VDFLQG---DFRDELVL 106 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHc--------------CCCceEEEEeccc--cc----CCCC--cEEEec---CCCChHHH
Confidence 4689999999999998887522 2335899999854 11 1222 234443 56542
Q ss_pred -----cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 120 -----LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 120 -----lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
.++++++|+|+|+.+.||..... . +... + .......|+...+.|+|||.+++..+
T Consensus 107 ~~i~~~~~~~~~D~V~S~~~~~~~g~~~-~--------------d~~~----~-~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 107 KALLERVGDSKVQVVMSDMAPNMSGTPA-V--------------DIPR----A-MYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred HHHHHHhCCCCCCEEecCCCCccCCChH-H--------------HHHH----H-HHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 26788999999999999954211 0 0000 0 01135789999999999999999887
Q ss_pred ccCC
Q 037735 195 SVPD 198 (329)
Q Consensus 195 g~~~ 198 (329)
..+.
T Consensus 167 ~~~~ 170 (209)
T PRK11188 167 QGEG 170 (209)
T ss_pred cCcC
Confidence 6554
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.5e-08 Score=76.36 Aligned_cols=98 Identities=26% Similarity=0.333 Sum_probs=67.4
Q ss_pred EEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--CCcceeeeccccccccccCCC
Q 037735 46 IADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--QSRSYYAAGVPGSFYSSLFPK 123 (329)
Q Consensus 46 IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~~~~~f~~gvpgsFy~~lfp~ 123 (329)
|+|+|||+|.++..+... + +. .|+.+++.-|+..++....-+... ..+.-|+.+ ++-+-.++.
T Consensus 1 ILDlgcG~G~~~~~l~~~--------~-~~---~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~---D~~~l~~~~ 65 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARR--------F-DA---GPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQA---DARDLPFSD 65 (101)
T ss_dssp -EEET-TTSHHHHHHHHH--------S---------SEEEEEES-HHHHHHHHHHSHHTTTTSEEEES---CTTCHHHHS
T ss_pred CEEeecCCcHHHHHHHHH--------h-hh---cccceEEEEECCHHHHHHHHHhchhcCCceEEEEC---CHhHCcccC
Confidence 799999999999999863 2 11 244799999999988776655541 113345555 453333678
Q ss_pred CceeEEEeccc-eecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCc
Q 037735 124 SSLHFVHSSYT-LHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGG 187 (329)
Q Consensus 124 ~s~dl~~Ss~a-lhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG 187 (329)
+++|+++++.. +|++++ +++.++|+..++-|+|||
T Consensus 66 ~~~D~v~~~~~~~~~~~~-----------------------------~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 66 GKFDLVVCSGLSLHHLSP-----------------------------EELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSEEEEEE-TTGGGGSSH-----------------------------HHHHHHHHHHHHTEEEEE
T ss_pred CCeeEEEEcCCccCCCCH-----------------------------HHHHHHHHHHHHHhCCCC
Confidence 89999999655 998763 366799999999999998
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.6e-07 Score=81.13 Aligned_cols=150 Identities=17% Similarity=0.127 Sum_probs=91.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC----cceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS----RSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~----~~~f~~gvpgsFy 117 (329)
...+|+|+|||+|..+..+.. . ...++..|...++....-+.++.. +..|..+ ++.
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~--------~---------~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~~ 114 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAK--------R---------GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVN---DLL 114 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHH--------C---------CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEC---Chh
Confidence 467999999999998888753 1 147899999887766554444321 2234433 442
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
. + | +++|+++++..++++.. .++..+++..++-+++|+.+.++ +.
T Consensus 115 ~-~-~-~~fD~ii~~~~l~~~~~-----------------------------~~~~~~l~~i~~~~~~~~~i~~~---~~ 159 (219)
T TIGR02021 115 S-L-C-GEFDIVVCMDVLIHYPA-----------------------------SDMAKALGHLASLTKERVIFTFA---PK 159 (219)
T ss_pred h-C-C-CCcCEEEEhhHHHhCCH-----------------------------HHHHHHHHHHHHHhCCCEEEEEC---CC
Confidence 2 2 3 89999999999877531 13456677777777766554432 11
Q ss_pred CCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEee
Q 037735 198 DGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMT 259 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~ 259 (329)
+. .+.. ...+.+... +.-.....++++++|+.++++..| |++.+.+...
T Consensus 160 ~~----------~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~G-f~v~~~~~~~ 208 (219)
T TIGR02021 160 TA----------WLAF-LKMIGELFP-GSSRATSAYLHPMTDLERALGELG-WKIVREGLVS 208 (219)
T ss_pred ch----------HHHH-HHHHHhhCc-CcccccceEEecHHHHHHHHHHcC-ceeeeeeccc
Confidence 10 1111 111122111 100011177789999999999885 9999887653
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.7e-07 Score=80.21 Aligned_cols=142 Identities=16% Similarity=0.182 Sum_probs=84.1
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeecccccccccc--
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSL-- 120 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~l-- 120 (329)
..+|+|+|||+|.++..+.+ . ...+++.-|+...+....-+. ...++. +++...+
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~--------~--------~~~~~~giD~s~~~i~~a~~~----~~~~~~---~d~~~~l~~ 70 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRD--------E--------KQVRGYGIEIDQDGVLACVAR----GVNVIQ---GDLDEGLEA 70 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHh--------c--------cCCcEEEEeCCHHHHHHHHHc----CCeEEE---EEhhhcccc
Confidence 45899999999998766643 1 123567778876554433211 112333 3453322
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCC
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGI 200 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~ 200 (329)
++++++|+++|+.++||+.++. .+|+.-.+ ++|..++++.....
T Consensus 71 ~~~~sfD~Vi~~~~l~~~~d~~-------------------------------~~l~e~~r---~~~~~ii~~p~~~~-- 114 (194)
T TIGR02081 71 FPDKSFDYVILSQTLQATRNPE-------------------------------EILDEMLR---VGRHAIVSFPNFGY-- 114 (194)
T ss_pred cCCCCcCEEEEhhHhHcCcCHH-------------------------------HHHHHHHH---hCCeEEEEcCChhH--
Confidence 6789999999999999976532 45655444 56666666533221
Q ss_pred cccCCcccchHHHHHHHHHHHHhcCCcC--CC---------cccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 201 PLVNNAAGSFYNTFGSCLVELTKMGILS--KE---------KMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 201 ~~~~~~~~~~~~~l~~a~~~l~~eG~i~--~~---------~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
+.. .+. +...|... +. ...+++.+|+.+.++.. +|++.....+
T Consensus 115 ----------~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~-Gf~v~~~~~~ 168 (194)
T TIGR02081 115 ----------WRV---RWS-ILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGEL-NLRILDRAAF 168 (194)
T ss_pred ----------HHH---HHH-HHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHC-CCEEEEEEEe
Confidence 111 001 11111111 00 03468999999999999 5999988765
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.6e-07 Score=86.66 Aligned_cols=114 Identities=17% Similarity=0.176 Sum_probs=80.3
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC-cceeeecccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS-RSYYAAGVPGSFYSSL 120 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~-~~~f~~gvpgsFy~~l 120 (329)
...+|+|+|||||..|..+++.. ....+++.-|+...+.....+.+... +..-+.++-|+|.+.+
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l--------------~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~ 128 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDAL--------------RQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPL 128 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhh--------------ccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchh
Confidence 34789999999999999998743 11268999999988877766655321 1121223345776533
Q ss_pred -CCCC----ceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 121 -FPKS----SLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 121 -fp~~----s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
+|.. ...++++.+++++++. .|..+||+..++.|+|||+|++.+-.
T Consensus 129 ~~~~~~~~~~~~~~~~gs~~~~~~~-----------------------------~e~~~~L~~i~~~L~pgG~~lig~d~ 179 (301)
T TIGR03438 129 ALPPEPAAGRRLGFFPGSTIGNFTP-----------------------------EEAVAFLRRIRQLLGPGGGLLIGVDL 179 (301)
T ss_pred hhhcccccCCeEEEEecccccCCCH-----------------------------HHHHHHHHHHHHhcCCCCEEEEeccC
Confidence 3433 4567778889999752 24568999999999999999998876
Q ss_pred cCC
Q 037735 196 VPD 198 (329)
Q Consensus 196 ~~~ 198 (329)
..+
T Consensus 180 ~~~ 182 (301)
T TIGR03438 180 VKD 182 (301)
T ss_pred CCC
Confidence 554
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.6e-07 Score=83.29 Aligned_cols=173 Identities=17% Similarity=0.175 Sum_probs=108.4
Q ss_pred HhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC
Q 037735 25 RYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS 104 (329)
Q Consensus 25 ~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~ 104 (329)
..+|.+..+.+.......+.+|+++|||.|....-+++.. +.|.+.+|+.|...+--+.+-++-.-.
T Consensus 54 R~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~-------------~n~~l~v~acDfsp~Ai~~vk~~~~~~ 120 (264)
T KOG2361|consen 54 RNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTS-------------PNNRLKVYACDFSPRAIELVKKSSGYD 120 (264)
T ss_pred hHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcC-------------CCCCeEEEEcCCChHHHHHHHhccccc
Confidence 4556665555433222234589999999999888887511 244589999999887655543332111
Q ss_pred -cc--eeeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHH
Q 037735 105 -RS--YYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQ 181 (329)
Q Consensus 105 -~~--~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~ 181 (329)
.. -|++-.-++=....++.+|+|+++.-+.| |-+++. -+.+-+....+
T Consensus 121 e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvL---SAi~pe--------------------------k~~~a~~nl~~ 171 (264)
T KOG2361|consen 121 ESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVL---SAIHPE--------------------------KMQSVIKNLRT 171 (264)
T ss_pred hhhhcccceeccchhccCCCCcCccceEEEEEEE---eccChH--------------------------HHHHHHHHHHH
Confidence 11 13322222223455677888888766664 444433 24466899999
Q ss_pred HhccCceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCc--------ccCCCHHHHHHHHHhCCceEEe
Q 037735 182 ELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEK--------MYNPTPKELEGIIQRNGNFTIE 253 (329)
Q Consensus 182 eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~--------~y~ps~eE~~~~i~~~g~f~i~ 253 (329)
-|+|||.|+|-=.|+.+.... +-. .+-.|++.- .|+-+.+|+.+++.+. ||..+
T Consensus 172 llKPGG~llfrDYg~~Dlaql----------------RF~-~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~a-gf~~~ 233 (264)
T KOG2361|consen 172 LLKPGGSLLFRDYGRYDLAQL----------------RFK-KGQCISENFYVRGDGTRAYFFTEEELDELFTKA-GFEEV 233 (264)
T ss_pred HhCCCcEEEEeecccchHHHH----------------hcc-CCceeecceEEccCCceeeeccHHHHHHHHHhc-ccchh
Confidence 999999999999998874321 000 111122111 6888999999999998 48877
Q ss_pred EEEE
Q 037735 254 RMEK 257 (329)
Q Consensus 254 ~~e~ 257 (329)
+++.
T Consensus 234 ~~~~ 237 (264)
T KOG2361|consen 234 QLEV 237 (264)
T ss_pred cccc
Confidence 7664
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.8e-07 Score=83.71 Aligned_cols=114 Identities=16% Similarity=0.176 Sum_probs=76.9
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--Ccc-eeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--SRS-YYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--~~~-~f~~gvpgsFy~ 118 (329)
...+|+|+|||+|..+..+.. + .|+.+++..|+........-+.+.. ..+ .++.|..-.+..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~--------~-------~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~ 80 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAK--------Q-------NPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLD 80 (194)
T ss_pred CCceEEEeCCCccHHHHHHHH--------h-------CCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHH
Confidence 345899999999999988874 2 3557899999987776665444321 112 344442212223
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
.++|++++|.+++++..+|..+.. . +.++ ....||+..++.|+|||.+++.+
T Consensus 81 ~~~~~~~~d~v~~~~pdpw~k~~h-~---~~r~-------------------~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 81 KFFPDGSLSKVFLNFPDPWPKKRH-N---KRRI-------------------TQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred hhCCCCceeEEEEECCCcCCCCCc-c---cccc-------------------CCHHHHHHHHHHhCCCCEEEEEe
Confidence 346788999999999999954311 1 0000 01378999999999999999988
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.8e-06 Score=77.48 Aligned_cols=140 Identities=16% Similarity=0.162 Sum_probs=93.5
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---------------Ccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---------------SRS 106 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---------------~~~ 106 (329)
...+|||+|||.|.|+..+.+ + ..+|+..|+...-...+++.-.. .+-
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~--------~---------G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v 96 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAE--------Q---------GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNI 96 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHh--------C---------CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCce
Confidence 346999999999999999974 1 26899999998766655442110 011
Q ss_pred eeeeccccccccccC-CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q 037735 107 YYAAGVPGSFYSSLF-PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVP 185 (329)
Q Consensus 107 ~f~~gvpgsFy~~lf-p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~p 185 (329)
-|..| +|++.-. +...+|+++-..++|= +|.. +..++++...+-|+|
T Consensus 97 ~~~~~---D~~~~~~~~~~~fD~i~D~~~~~~---l~~~--------------------------~R~~~~~~l~~lLkp 144 (213)
T TIGR03840 97 EIFCG---DFFALTAADLGPVDAVYDRAALIA---LPEE--------------------------MRQRYAAHLLALLPP 144 (213)
T ss_pred EEEEc---cCCCCCcccCCCcCEEEechhhcc---CCHH--------------------------HHHHHHHHHHHHcCC
Confidence 12332 4544221 1346888888887773 4422 445789999999999
Q ss_pred CceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEee
Q 037735 186 GGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMT 259 (329)
Q Consensus 186 GG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~ 259 (329)
||++++.++..+.... .|- .|.-+++|+++.+... |+|..++..+
T Consensus 145 gG~~ll~~~~~~~~~~----------------------~gp-----p~~~~~~eL~~~f~~~--~~i~~~~~~~ 189 (213)
T TIGR03840 145 GARQLLITLDYDQSEM----------------------AGP-----PFSVSPAEVEALYGGH--YEIELLESRD 189 (213)
T ss_pred CCeEEEEEEEcCCCCC----------------------CCc-----CCCCCHHHHHHHhcCC--ceEEEEeecc
Confidence 9998888776543211 011 4557899999998754 9998888653
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.9e-07 Score=82.66 Aligned_cols=140 Identities=17% Similarity=0.253 Sum_probs=85.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccC
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLF 121 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lf 121 (329)
++-++||+|||.|.||+-|.+ + .+.|..-|....-...+.+.... ...=+...-.++-+.-+
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~--------~---------G~~VtAvD~s~~al~~l~~~a~~-~~l~i~~~~~Dl~~~~~ 91 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLAS--------Q---------GFDVTAVDISPVALEKLQRLAEE-EGLDIRTRVADLNDFDF 91 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHH--------T---------T-EEEEEESSHHHHHHHHHHHHH-TT-TEEEEE-BGCCBS-
T ss_pred CCCcEEEcCCCCcHHHHHHHH--------C---------CCeEEEEECCHHHHHHHHHHHhh-cCceeEEEEecchhccc
Confidence 467999999999999999985 1 27899999987665554332110 00001111124433334
Q ss_pred CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCCc
Q 037735 122 PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIP 201 (329)
Q Consensus 122 p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~ 201 (329)
++.+|+|+|..++|.|... .+..+++...+.++|||++++.++-.....+
T Consensus 92 -~~~yD~I~st~v~~fL~~~-----------------------------~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p 141 (192)
T PF03848_consen 92 -PEEYDFIVSTVVFMFLQRE-----------------------------LRPQIIENMKAATKPGGYNLIVTFMETPDYP 141 (192)
T ss_dssp -TTTEEEEEEESSGGGS-GG-----------------------------GHHHHHHHHHHTEEEEEEEEEEEEB--SSS-
T ss_pred -cCCcCEEEEEEEeccCCHH-----------------------------HHHHHHHHHHhhcCCcEEEEEEEecccCCCC
Confidence 4789999999999998631 3457789999999999999987664322211
Q ss_pred ccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 202 LVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 202 ~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
... -+ -+...+.|++.... .|+|.+.++
T Consensus 142 ~~~-----~~--------------------~f~~~~~EL~~~y~---dW~il~y~E 169 (192)
T PF03848_consen 142 CPS-----PF--------------------PFLLKPGELREYYA---DWEILKYNE 169 (192)
T ss_dssp -SS---------------------------S--B-TTHHHHHTT---TSEEEEEEE
T ss_pred CCC-----CC--------------------CcccCHHHHHHHhC---CCeEEEEEc
Confidence 100 00 34457889888766 399988764
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-06 Score=71.45 Aligned_cols=100 Identities=17% Similarity=0.097 Sum_probs=64.9
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CCCcceeeeccccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQSRSYYAAGVPGSFYSS 119 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~~~~~f~~gvpgsFy~~ 119 (329)
..+|+|+|||+|..+..+.+ + .|+.+++..|.........-+.+ .-.+..++.+ +....
T Consensus 20 ~~~vldlG~G~G~~~~~l~~--------~-------~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~ 81 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAAR--------L-------VPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEG---DAPEA 81 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHH--------H-------CCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEec---ccccc
Confidence 45999999999999998875 2 23468999999876655543222 1111223332 22111
Q ss_pred c-CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 120 L-FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 120 l-fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
+ ...+++|++++..+.+ ++..+++..++.|+|||.+++++.
T Consensus 82 ~~~~~~~~D~v~~~~~~~----------------------------------~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 82 LEDSLPEPDRVFIGGSGG----------------------------------LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred ChhhcCCCCEEEECCcch----------------------------------hHHHHHHHHHHHcCCCCEEEEEec
Confidence 1 2235788888754322 234789999999999999999863
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.2e-06 Score=74.36 Aligned_cols=121 Identities=13% Similarity=0.091 Sum_probs=73.8
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--Ccceeeeccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--SRSYYAAGVPGSFYSS 119 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--~~~~f~~gvpgsFy~~ 119 (329)
+..+|+|+|||+|..+..+.. . .+ +++..|+........-+++.. ....+.. +++++.
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~--------~-------~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~---~d~~~~ 78 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKG--------K-------GK--CILTTDINPFAVKELRENAKLNNVGLDVVM---TDLFKG 78 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHh--------c-------CC--EEEEEECCHHHHHHHHHHHHHcCCceEEEE---cccccc
Confidence 346899999999999888764 1 22 799999987665554433321 1112233 355553
Q ss_pred cCCCCceeEEEeccceecccCCCCC-CCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKV-DGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~-~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
+.+++|+++|+..+|........ +|.+-..+-.... ...+..||+...+.|+|||.+++...+
T Consensus 79 --~~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~Lk~gG~~~~~~~~ 142 (179)
T TIGR00537 79 --VRGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDG-----------RKVIDRFLDELPEILKEGGRVQLIQSS 142 (179)
T ss_pred --cCCcccEEEECCCCCCCcchhcccchhhhhhhcCCch-----------HHHHHHHHHhHHHhhCCCCEEEEEEec
Confidence 34589999999988866543211 1110000000000 112468899999999999999998744
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.3e-06 Score=80.02 Aligned_cols=150 Identities=16% Similarity=0.185 Sum_probs=88.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--------Ccceeeeccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--------SRSYYAAGVP 113 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--------~~~~f~~gvp 113 (329)
+..+|+|+|||+|.+++.+.+ + ..+|+..|+..++....-+.... ....|..+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~--------~---------g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~-- 204 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLAL--------E---------GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAN-- 204 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHH--------C---------CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEc--
Confidence 357999999999999988874 1 14799999998887654433221 11223332
Q ss_pred cccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 114 GSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 114 gsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
+. +. .++++|+|+|+.++|++.+. +...+++..+ .+.+||+ ++++
T Consensus 205 -Dl-~~--l~~~fD~Vv~~~vL~H~p~~-----------------------------~~~~ll~~l~-~l~~g~l-iIs~ 249 (315)
T PLN02585 205 -DL-ES--LSGKYDTVTCLDVLIHYPQD-----------------------------KADGMIAHLA-SLAEKRL-IISF 249 (315)
T ss_pred -ch-hh--cCCCcCEEEEcCEEEecCHH-----------------------------HHHHHHHHHH-hhcCCEE-EEEe
Confidence 22 22 26889999999998764321 1224454444 4555554 5544
Q ss_pred cccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEee
Q 037735 194 FSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMT 259 (329)
Q Consensus 194 ~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~ 259 (329)
.+... .++.++ .+.++.. |.......|+.+.+|++++++..| |++.+.+...
T Consensus 250 -~p~~~----------~~~~l~-~~g~~~~-g~~~~~r~y~~s~eel~~lL~~AG-f~v~~~~~~~ 301 (315)
T PLN02585 250 -APKTL----------YYDILK-RIGELFP-GPSKATRAYLHAEADVERALKKAG-WKVARREMTA 301 (315)
T ss_pred -CCcch----------HHHHHH-HHHhhcC-CCCcCceeeeCCHHHHHHHHHHCC-CEEEEEEEee
Confidence 33221 122222 1222211 110001156779999999999985 9998877654
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.7e-06 Score=78.27 Aligned_cols=131 Identities=8% Similarity=-0.022 Sum_probs=73.5
Q ss_pred hHHHhHHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCC
Q 037735 10 YASNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDH 89 (329)
Q Consensus 10 Y~~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDL 89 (329)
|-.=.+.+.+.++.++-=|+ .+. ..+-.+|||+|||+|..|..+.+.+ .++-.||..|+
T Consensus 107 yR~w~p~rSKlaa~i~~g~~----~l~---IkpG~~VLDLGaG~G~~t~~lAdiV--------------G~~G~VyAVD~ 165 (293)
T PTZ00146 107 YRVWNPFRSKLAAAIIGGVA----NIP---IKPGSKVLYLGAASGTTVSHVSDLV--------------GPEGVVYAVEF 165 (293)
T ss_pred eeeeCCcccHHHHHHHCCcc----eec---cCCCCEEEEeCCcCCHHHHHHHHHh--------------CCCCEEEEEEC
Confidence 44445555555544432222 121 1233689999999999998887633 23347999998
Q ss_pred CcchHHhhhhcCCC-CcceeeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHH
Q 037735 90 SDNDFNTLFKSLPQ-SRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQF 168 (329)
Q Consensus 90 p~ndfn~lf~~l~~-~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~ 168 (329)
..++...+.+.... ..-.++.+....-+.--++..++|+|++..+..|
T Consensus 166 s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~Dva~pd------------------------------- 214 (293)
T PTZ00146 166 SHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFADVAQPD------------------------------- 214 (293)
T ss_pred cHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEeCCCcc-------------------------------
Confidence 86533222221111 1123444331110001123458999999886322
Q ss_pred hhcHHHHHHHHHHHhccCceEEEEec
Q 037735 169 NNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 169 ~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
+...++.+..+.|+|||.|++..-
T Consensus 215 --q~~il~~na~r~LKpGG~~vI~ik 238 (293)
T PTZ00146 215 --QARIVALNAQYFLKNGGHFIISIK 238 (293)
T ss_pred --hHHHHHHHHHHhccCCCEEEEEEe
Confidence 112445567788999999999653
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.6e-06 Score=77.48 Aligned_cols=108 Identities=8% Similarity=0.037 Sum_probs=66.2
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcc-eeeecccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRS-YYAAGVPGSFYSSL 120 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~-~f~~gvpgsFy~~l 120 (329)
+..+|+|+|||+|..|..+.+.+ +.-.|+.-|+...+...+.+......+ .++.|.........
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v---------------~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~ 136 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIV---------------EEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYA 136 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhc---------------CCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhh
Confidence 34699999999999998876421 124799999988765544333221112 23343321110111
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
..++++|++++..+..| .-..+|+..++.|+|||.+++++..++
T Consensus 137 ~l~~~~D~i~~d~~~p~---------------------------------~~~~~L~~~~r~LKpGG~lvI~v~~~~ 180 (226)
T PRK04266 137 HVVEKVDVIYQDVAQPN---------------------------------QAEIAIDNAEFFLKDGGYLLLAIKARS 180 (226)
T ss_pred hccccCCEEEECCCChh---------------------------------HHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence 12356999986543222 012458889999999999999877643
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=8.8e-07 Score=86.34 Aligned_cols=105 Identities=16% Similarity=0.238 Sum_probs=73.0
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC--cceeeecccccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS--RSYYAAGVPGSFYSSL 120 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~--~~~f~~gvpgsFy~~l 120 (329)
.-+|+|+|||+|..+..+.+ + .|..+|+..|.........-+++... ..-+. +++.+..
T Consensus 197 ~g~VLDlGCG~G~ls~~la~--------~-------~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~---~~D~~~~- 257 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLAR--------H-------SPKIRLTLSDVSAAALESSRATLAANGLEGEVF---ASNVFSD- 257 (342)
T ss_pred CCeEEEeccCcCHHHHHHHH--------h-------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEE---Ecccccc-
Confidence 34899999999999888764 2 35578999999876665544333211 11122 2344442
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
.++++|+|+|+..+||.-... ..+...|++.-++.|+|||.|++..
T Consensus 258 -~~~~fDlIvsNPPFH~g~~~~--------------------------~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 258 -IKGRFDMIISNPPFHDGIQTS--------------------------LDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred -cCCCccEEEECCCccCCcccc--------------------------HHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 367899999999999842211 1245689999999999999998875
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.4e-06 Score=79.51 Aligned_cols=149 Identities=23% Similarity=0.232 Sum_probs=94.4
Q ss_pred eEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhc---CCCC-c--ce---eeecccc
Q 037735 44 FRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKS---LPQS-R--SY---YAAGVPG 114 (329)
Q Consensus 44 ~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~---l~~~-~--~~---f~~gvpg 114 (329)
.+|+|+|||+|-+|..|.. +. .+|...|+..-+-...-.. .|.. . .| |....
T Consensus 91 ~~ilDvGCGgGLLSepLAr---------lg--------a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~-- 151 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLAR---------LG--------AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTD-- 151 (282)
T ss_pred ceEEEeccCccccchhhHh---------hC--------CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcc--
Confidence 6799999999999999973 21 5889999875443332111 1211 1 11 33221
Q ss_pred ccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 115 SFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 115 sFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
- +-+-+. +|.|+++-.++-.. |...|+.+.++-|+|||.|++++.
T Consensus 152 -~-E~~~~~--fDaVvcsevleHV~-------------------------------dp~~~l~~l~~~lkP~G~lfitti 196 (282)
T KOG1270|consen 152 -V-EGLTGK--FDAVVCSEVLEHVK-------------------------------DPQEFLNCLSALLKPNGRLFITTI 196 (282)
T ss_pred -h-hhcccc--cceeeeHHHHHHHh-------------------------------CHHHHHHHHHHHhCCCCceEeeeh
Confidence 2 223332 99999999888754 445999999999999999999998
Q ss_pred ccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEE
Q 037735 195 SVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERME 256 (329)
Q Consensus 195 g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e 256 (329)
-|.-.... +.+ .+.+-+..+|-.|.-.-+ =|++++|+..+++.+ ++.++.+.
T Consensus 197 nrt~lS~~-----~~i--~~~E~vl~ivp~Gth~~e--kfi~p~e~~~~l~~~-~~~v~~v~ 248 (282)
T KOG1270|consen 197 NRTILSFA-----GTI--FLAEIVLRIVPKGTHTWE--KFINPEELTSILNAN-GAQVNDVV 248 (282)
T ss_pred hhhHHHhh-----ccc--cHHHHHHHhcCCCCcCHH--HcCCHHHHHHHHHhc-Ccchhhhh
Confidence 77632111 011 122222335555632222 247999999999988 47766554
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.8e-06 Score=85.18 Aligned_cols=105 Identities=17% Similarity=0.195 Sum_probs=72.2
Q ss_pred eEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC----CCC--cceeeeccccccc
Q 037735 44 FRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL----PQS--RSYYAAGVPGSFY 117 (329)
Q Consensus 44 ~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l----~~~--~~~f~~gvpgsFy 117 (329)
.+|+|+|||+|..++.+.+ + .|+.+|++.|.........-.++ +.. +--|.. ++.+
T Consensus 230 ~~VLDLGCGtGvi~i~la~--------~-------~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~---~D~l 291 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLD--------K-------NPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMI---NNAL 291 (378)
T ss_pred CeEEEEeccccHHHHHHHH--------h-------CCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEE---cccc
Confidence 5899999999999888764 2 46679999999865555543332 110 112332 3454
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
..+ ++.++|+|+|+--+|+...+.. . ...++|+.-.+.|+|||.|++..
T Consensus 292 ~~~-~~~~fDlIlsNPPfh~~~~~~~---------------~-----------ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 292 SGV-EPFRFNAVLCNPPFHQQHALTD---------------N-----------VAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred ccC-CCCCEEEEEECcCcccCccCCH---------------H-----------HHHHHHHHHHHhcccCCEEEEEE
Confidence 443 5678999999999998543321 1 12367888899999999999985
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.1e-06 Score=75.20 Aligned_cols=97 Identities=13% Similarity=0.110 Sum_probs=64.5
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhc---CCCCcceeeeccccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKS---LPQSRSYYAAGVPGSFYSS 119 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~---l~~~~~~f~~gvpgsFy~~ 119 (329)
..+|+|+|||+|..|..+.. . .|..+|+.-|...++...+-+. ..-.+--++.| +.. .
T Consensus 43 ~~~vLDiGcGtG~~s~~la~--------~-------~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~---d~~-~ 103 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAI--------A-------RPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNG---RAE-D 103 (181)
T ss_pred CCeEEEecCCCCccHHHHHH--------H-------CCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEec---chh-h
Confidence 57999999999999998853 1 2336899999987754433222 22112224444 453 3
Q ss_pred cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
+.+.+++|+|+|.. +++ + ..+++...+-|+|||.+++..
T Consensus 104 ~~~~~~fD~I~s~~-~~~---~-------------------------------~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 104 FQHEEQFDVITSRA-LAS---L-------------------------------NVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred ccccCCccEEEehh-hhC---H-------------------------------HHHHHHHHHhcCCCCEEEEEc
Confidence 44578999999865 332 2 255777788899999999763
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=98.29 E-value=2e-06 Score=77.14 Aligned_cols=105 Identities=18% Similarity=0.236 Sum_probs=71.2
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcc-eeeeccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRS-YYAAGVPGSFYSS 119 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~-~f~~gvpgsFy~~ 119 (329)
+...+++|+|||.|.+|..|.. +| -.+...|+...-....-+.+..... -|..+ +. -+
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~--------rC---------d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~---dv-p~ 100 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAP--------RC---------DRLLAVDISPRALARARERLAGLPHVEWIQA---DV-PE 100 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGG--------GE---------EEEEEEES-HHHHHHHHHHTTT-SSEEEEES----T-TT
T ss_pred cccceeEecCCCccHHHHHHHH--------hh---------CceEEEeCCHHHHHHHHHhcCCCCCeEEEEC---cC-CC
Confidence 4567899999999999999974 43 2678888876555554545543222 23332 12 23
Q ss_pred cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
..|++++|+++-+-.+++|++.+ |+.+++..-.+-|.|||.|++...
T Consensus 101 ~~P~~~FDLIV~SEVlYYL~~~~----------------------------~L~~~l~~l~~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 101 FWPEGRFDLIVLSEVLYYLDDAE----------------------------DLRAALDRLVAALAPGGHLVFGHA 147 (201)
T ss_dssp ---SS-EEEEEEES-GGGSSSHH----------------------------HHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCCeeEEEEehHhHcCCCHH----------------------------HHHHHHHHHHHHhCCCCEEEEEEe
Confidence 35999999999999999997533 778899999999999999999886
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.6e-06 Score=79.42 Aligned_cols=146 Identities=21% Similarity=0.241 Sum_probs=95.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC----CCCcceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL----PQSRSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l----~~~~~~f~~gvpgsFy 117 (329)
+-.+|||+||+.|..+..+.. + .| -.|+.-| |.-.|...|+-+ +....+|.. |-..
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~--------~-------GA-~~ViGiD-P~~lf~~QF~~i~~~lg~~~~~~~l--plgv- 174 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLG--------R-------GA-KSVIGID-PSPLFYLQFEAIKHFLGQDPPVFEL--PLGV- 174 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhh--------c-------CC-CEEEEEC-CChHHHHHHHHHHHHhCCCccEEEc--Ccch-
Confidence 346999999999999998874 1 23 3678888 545555555443 333344443 1123
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
+.|-+.+++|+|+|.-.|=-+.++= ..|..-...|+|||.|++-++..+
T Consensus 175 E~Lp~~~~FDtVF~MGVLYHrr~Pl-------------------------------~~L~~Lk~~L~~gGeLvLETlvi~ 223 (315)
T PF08003_consen 175 EDLPNLGAFDTVFSMGVLYHRRSPL-------------------------------DHLKQLKDSLRPGGELVLETLVID 223 (315)
T ss_pred hhccccCCcCEEEEeeehhccCCHH-------------------------------HHHHHHHHhhCCCCEEEEEEeeec
Confidence 5665578999999988776655432 448888999999999999998755
Q ss_pred CCCcccCCcccchHHHHHHHHHHHHhcCCcCCCc--ccCCCHHHHHHHHHhCCceEEeEEE
Q 037735 198 DGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEK--MYNPTPKELEGIIQRNGNFTIERME 256 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~--~y~ps~eE~~~~i~~~g~f~i~~~e 256 (329)
..... .|+-++.-.+-. .+.||..-+..+++..| |+-+++-
T Consensus 224 g~~~~-----------------~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~g-F~~v~~v 266 (315)
T PF08003_consen 224 GDENT-----------------VLVPEDRYAKMRNVWFIPSVAALKNWLERAG-FKDVRCV 266 (315)
T ss_pred CCCce-----------------EEccCCcccCCCceEEeCCHHHHHHHHHHcC-CceEEEe
Confidence 43211 011111111111 55699999999999995 8765544
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.5e-05 Score=72.94 Aligned_cols=139 Identities=18% Similarity=0.213 Sum_probs=89.2
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhc--CCC-------------Ccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKS--LPQ-------------SRS 106 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~--l~~-------------~~~ 106 (329)
+..+|+|+|||.|.|+..+.+ ...+|+..|+...-...+++. +.. .+-
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~-----------------~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v 99 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAE-----------------QGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEI 99 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHh-----------------CCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCce
Confidence 346999999999999999974 126899999987655554432 110 001
Q ss_pred eeeeccccccccccC-CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q 037735 107 YYAAGVPGSFYSSLF-PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVP 185 (329)
Q Consensus 107 ~f~~gvpgsFy~~lf-p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~p 185 (329)
-+..| ++++... +...+|+++-..++|=+ |. .+..++++.-++-|+|
T Consensus 100 ~~~~~---D~~~l~~~~~~~fd~v~D~~~~~~l---~~--------------------------~~R~~~~~~l~~lL~p 147 (218)
T PRK13255 100 TIYCG---DFFALTAADLADVDAVYDRAALIAL---PE--------------------------EMRERYVQQLAALLPA 147 (218)
T ss_pred EEEEC---cccCCCcccCCCeeEEEehHhHhhC---CH--------------------------HHHHHHHHHHHHHcCC
Confidence 12222 4443321 12467888888877743 31 2345779999999999
Q ss_pred CceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 186 GGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 186 GG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
||++++.++..+.... .|- .|.-+.+|+.+.+.. .|+|+.++..
T Consensus 148 gG~~~l~~~~~~~~~~----------------------~gP-----p~~~~~~el~~~~~~--~~~i~~~~~~ 191 (218)
T PRK13255 148 GCRGLLVTLDYPQEEL----------------------AGP-----PFSVSDEEVEALYAG--CFEIELLERQ 191 (218)
T ss_pred CCeEEEEEEEeCCccC----------------------CCC-----CCCCCHHHHHHHhcC--CceEEEeeec
Confidence 9986666655432110 121 355789999999863 3999988864
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=98.26 E-value=4e-06 Score=73.41 Aligned_cols=108 Identities=17% Similarity=0.255 Sum_probs=71.7
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--Ccceeeeccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--SRSYYAAGVPGSFYSS 119 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--~~~~f~~gvpgsFy~~ 119 (329)
...+|+|+|||+|..++.+.. + .|...|++.|...+.....-+++.. ...+ ..+..+.++.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~--------~-------~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v--~~~~~d~~~~ 93 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAK--------R-------GPDAKVTAVDINPDALELAKRNAERNGLENV--EVVQSDLFEA 93 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHH--------T-------STCEEEEEEESBHHHHHHHHHHHHHTTCTTE--EEEESSTTTT
T ss_pred cCCeEEEecCChHHHHHHHHH--------h-------CCCCEEEEEcCCHHHHHHHHHHHHhcCcccc--cccccccccc
Confidence 457899999999999998875 2 4556799999987666665444421 1212 2223466655
Q ss_pred cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
+. ++++|+|+|+-=+|+-.+.. ..-+..|++.-.+-|+|||.|++..
T Consensus 94 ~~-~~~fD~Iv~NPP~~~~~~~~--------------------------~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 94 LP-DGKFDLIVSNPPFHAGGDDG--------------------------LDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp CC-TTCEEEEEE---SBTTSHCH--------------------------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cc-ccceeEEEEccchhcccccc--------------------------hhhHHHHHHHHHHhccCCCEEEEEe
Confidence 44 78999999986655532100 1124588999999999999998865
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=8e-06 Score=77.13 Aligned_cols=119 Identities=13% Similarity=0.125 Sum_probs=76.6
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccCC
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLFP 122 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lfp 122 (329)
..+|+|+|||+|..++.+.. + .+..+|+..|+........-+.++. .-+.. +++.+ +.+
T Consensus 65 ~grVLDLGcGsGilsl~la~--------r-------~~~~~V~gVDisp~al~~Ar~n~~~--v~~v~---~D~~e-~~~ 123 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLH--------R-------CKPEKIVCVELNPEFARIGKRLLPE--AEWIT---SDVFE-FES 123 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHH--------h-------CCCCEEEEEECCHHHHHHHHHhCcC--CEEEE---Cchhh-hcc
Confidence 36899999999988887754 2 1225899999987666555444432 22344 35643 334
Q ss_pred CCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHH--HHHhh--cHHHHHHHHHHHhccCceEEEEecccC
Q 037735 123 KSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYA--AQFNN--DFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 123 ~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~--~q~~~--D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
..++|+|+|+-.++++......+| -+|. +...+ .+..|++..+.-|+|+|...+..-|++
T Consensus 124 ~~kFDlIIsNPPF~~l~~~d~~~~---------------~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~ 187 (279)
T PHA03411 124 NEKFDVVISNPPFGKINTTDTKDV---------------FEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRP 187 (279)
T ss_pred cCCCcEEEEcCCccccCchhhhhh---------------hhhccCccccccccHHHHHhhhHheecCCceEEEEEeccc
Confidence 578999999999999643221111 0110 00001 257899999999999998888865544
|
|
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.4e-06 Score=74.82 Aligned_cols=80 Identities=9% Similarity=0.027 Sum_probs=52.0
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---Cc-ceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---SR-SYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~~-~~f~~gvpgsFy 117 (329)
+..+|+|+|||+|..|..+.+.+ .+.-+|+..|...+.....-+++.. .. -.+.. +++.
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~--------------~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~---~d~~ 134 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAI--------------ERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYH---GDGK 134 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhc--------------CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE---CCcc
Confidence 34789999999999998876522 1224799999987665544333321 11 12343 3554
Q ss_pred cccCCCCceeEEEeccceecc
Q 037735 118 SSLFPKSSLHFVHSSYTLHWL 138 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWL 138 (329)
+-+.+.+++|.+++..+++++
T Consensus 135 ~~~~~~~~fD~Ii~~~~~~~~ 155 (205)
T PRK13944 135 RGLEKHAPFDAIIVTAAASTI 155 (205)
T ss_pred cCCccCCCccEEEEccCcchh
Confidence 444456799999999988763
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.2e-06 Score=75.66 Aligned_cols=98 Identities=15% Similarity=0.112 Sum_probs=66.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CCCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~~~~~f~~gvpgsFy~ 118 (329)
...+|+|+|||+|..++.+.. . .|..+|+.-|....+....-+.+ ....--|..+ +..+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~--------~-------~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~---d~~~ 106 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAI--------A-------RPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHG---RAEE 106 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHH--------H-------CCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEec---cHhh
Confidence 368999999999999988864 1 23468999999876554432222 1111223333 3433
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
+-+.+++|+++|... . ++..|++..++-|+|||.+++..
T Consensus 107 -~~~~~~fDlV~~~~~----~-------------------------------~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 107 -FGQEEKFDVVTSRAV----A-------------------------------SLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred -CCCCCCccEEEEccc----c-------------------------------CHHHHHHHHHHhcCCCeEEEEEe
Confidence 323678999998631 1 33478999999999999999875
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.5e-06 Score=75.71 Aligned_cols=98 Identities=10% Similarity=0.101 Sum_probs=63.2
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|.+|..+.... .++.+|+..|.........-+.+. -....++.| +..+
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~--------------~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~---d~~~ 139 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIV--------------GRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVG---DGTQ 139 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHh--------------CCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEEC---Cccc
Confidence 45799999999999998776522 223579999987665544333321 112234544 4544
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
-+.+.+.+|++++..+.+. +| ..-.+.|+|||+|++.+
T Consensus 140 ~~~~~~~fD~Ii~~~~~~~---~~----------------------------------~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 140 GWEPLAPYDRIYVTAAGPK---IP----------------------------------EALIDQLKEGGILVMPV 177 (215)
T ss_pred CCcccCCCCEEEEcCCccc---cc----------------------------------HHHHHhcCcCcEEEEEE
Confidence 4444578999998765433 22 22346799999999876
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.9e-05 Score=71.55 Aligned_cols=147 Identities=17% Similarity=0.274 Sum_probs=85.0
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC----Ccceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ----SRSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~----~~~~f~~gvpgsFy 117 (329)
+..+|+|+|||+|..+..+.+ . . .+++..|+..++....-+.... .+.-|..+ ++
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~--------~-------~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~- 121 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLAR--------R-------G--AKVVASDISPQMVEEARERAPEAGLAGNITFEVG---DL- 121 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHH--------c-------C--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEc---Cc-
Confidence 357899999999999888763 1 1 3599999987775554333221 12234443 22
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
+ .+++++|+++++.++|++++ .++...++..++-+ +||. ++++....
T Consensus 122 ~--~~~~~fD~v~~~~~l~~~~~-----------------------------~~~~~~l~~l~~~~-~~~~-~i~~~~~~ 168 (230)
T PRK07580 122 E--SLLGRFDTVVCLDVLIHYPQ-----------------------------EDAARMLAHLASLT-RGSL-IFTFAPYT 168 (230)
T ss_pred h--hccCCcCEEEEcchhhcCCH-----------------------------HHHHHHHHHHHhhc-CCeE-EEEECCcc
Confidence 2 34688999999999966432 13344555555533 3433 34432221
Q ss_pred CCCcccCCcccchHHHHHHHHHHHHhcCCcC---CCc-ccCCCHHHHHHHHHhCCceEEeEEEEeec
Q 037735 198 DGIPLVNNAAGSFYNTFGSCLVELTKMGILS---KEK-MYNPTPKELEGIIQRNGNFTIERMEKMTN 260 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~---~~~-~y~ps~eE~~~~i~~~g~f~i~~~e~~~~ 260 (329)
. .+..+. ++. +.+. ... .++.+.+++.+.++..| |++.+.+....
T Consensus 169 ~-----------~~~~~~-----~l~-~~~~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~~ 217 (230)
T PRK07580 169 P-----------LLALLH-----WIG-GLFPGPSRTTRIYPHREKGIRRALAAAG-FKVVRTERISS 217 (230)
T ss_pred H-----------HHHHHH-----Hhc-cccCCccCCCCccccCHHHHHHHHHHCC-CceEeeeeccc
Confidence 1 111111 111 1111 111 56679999999999884 99988876643
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.1e-06 Score=79.14 Aligned_cols=153 Identities=16% Similarity=0.136 Sum_probs=90.2
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC-CCcc-eeeeccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP-QSRS-YYAAGVPGSFYSS 119 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~-~~~~-~f~~gvpgsFy~~ 119 (329)
.-.+|+|+|||-|.+|..+.. -...|+..|+....-...-..-. ..-. =|..+ .-.+.
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr-----------------~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~---~~edl 118 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLAR-----------------LGASVTGIDASEKPIEVAKLHALESGVNIDYRQA---TVEDL 118 (243)
T ss_pred CCCeEEEecCCccHhhHHHHH-----------------CCCeeEEecCChHHHHHHHHhhhhccccccchhh---hHHHH
Confidence 347899999999988888763 12689999998655433221111 1001 02211 22233
Q ss_pred cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCC
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDG 199 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~ 199 (329)
....+++|+|+|.=.|+-+.++ ..|++.+++-++|||.|++++.-|.--
T Consensus 119 ~~~~~~FDvV~cmEVlEHv~dp-------------------------------~~~~~~c~~lvkP~G~lf~STinrt~k 167 (243)
T COG2227 119 ASAGGQFDVVTCMEVLEHVPDP-------------------------------ESFLRACAKLVKPGGILFLSTINRTLK 167 (243)
T ss_pred HhcCCCccEEEEhhHHHccCCH-------------------------------HHHHHHHHHHcCCCcEEEEeccccCHH
Confidence 3455899999988777764432 479999999999999999999886531
Q ss_pred CcccCCcccchHH--HHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 200 IPLVNNAAGSFYN--TFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 200 ~~~~~~~~~~~~~--~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
. .+.. ..+-.++ ++-.|. +.--=+-.++|+...+... .+++....-
T Consensus 168 a--------~~~~i~~ae~vl~-~vP~gT--H~~~k~irp~El~~~~~~~-~~~~~~~~g 215 (243)
T COG2227 168 A--------YLLAIIGAEYVLR-IVPKGT--HDYRKFIKPAELIRWLLGA-NLKIIDRKG 215 (243)
T ss_pred H--------HHHHHHHHHHHHH-hcCCcc--hhHHHhcCHHHHHHhcccC-CceEEeecc
Confidence 1 0110 1111222 222231 1101123678888887765 377666553
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.3e-06 Score=73.44 Aligned_cols=100 Identities=13% Similarity=0.144 Sum_probs=64.9
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---Ccceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---SRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~~~~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|..+..+.+ + .|..+++..|........+-++... ..--+..+ +. .
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~--------~-------~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~---d~-~ 91 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAAL--------Q-------FPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPG---EA-P 91 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHH--------H-------CCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEec---Cc-h
Confidence 456899999999999998874 2 2346899999976655554333211 11122322 33 1
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
..+ ++++|++++..+.+ .+..++....+.|+|||++++...+
T Consensus 92 ~~~-~~~~D~v~~~~~~~----------------------------------~~~~~l~~~~~~Lk~gG~lv~~~~~ 133 (187)
T PRK08287 92 IEL-PGKADAIFIGGSGG----------------------------------NLTAIIDWSLAHLHPGGRLVLTFIL 133 (187)
T ss_pred hhc-CcCCCEEEECCCcc----------------------------------CHHHHHHHHHHhcCCCeEEEEEEec
Confidence 222 35789998865432 1236688889999999999986643
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.2e-06 Score=82.61 Aligned_cols=110 Identities=15% Similarity=0.208 Sum_probs=77.2
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--Ccc-eeeeccccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--SRS-YYAAGVPGSFYSS 119 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--~~~-~f~~gvpgsFy~~ 119 (329)
.-.++|+|||+|..+..+.. + .|+..++.-|+.......+-+.... ..+ .++.|....+ -.
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~--------~-------~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~l-l~ 186 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAK--------N-------NPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLL-LE 186 (390)
T ss_pred CCeEEEEcCcccHHHHHHHH--------h-------CCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHh-hh
Confidence 34799999999999988875 2 4678999999988777776554321 123 3444432222 24
Q ss_pred cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
.+|++++|.++.++...|..+.. .++ -...||...++.|+|||.+.+.+
T Consensus 187 ~~~~~s~D~I~lnFPdPW~KkrH------RRl-------------------v~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 187 LLPSNSVEKIFVHFPVPWDKKPH------RRV-------------------ISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred hCCCCceeEEEEeCCCCccccch------hhc-------------------cHHHHHHHHHHHcCCCcEEEEEE
Confidence 58999999999988777732210 011 12488999999999999999988
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.4e-06 Score=63.67 Aligned_cols=99 Identities=25% Similarity=0.287 Sum_probs=66.8
Q ss_pred EEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhh---cCCCCcceeeecccccccccc-
Q 037735 45 RIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFK---SLPQSRSYYAAGVPGSFYSSL- 120 (329)
Q Consensus 45 ~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~---~l~~~~~~f~~gvpgsFy~~l- 120 (329)
+|+|+|||+|.++..+.. .+..+++..|+..+.....-+ ........+..+ ++....
T Consensus 1 ~ildig~G~G~~~~~~~~----------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 61 (107)
T cd02440 1 RVLDLGCGTGALALALAS----------------GPGARVTGVDISPVALELARKAAAALLADNVEVLKG---DAEELPP 61 (107)
T ss_pred CeEEEcCCccHHHHHHhc----------------CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEc---Chhhhcc
Confidence 589999999998877753 122578999987655444331 111112233333 343333
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEE
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALV 192 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~ 192 (329)
.+.+++|+++++..+++.+ .+...+++...+-|+|||.++++
T Consensus 62 ~~~~~~d~i~~~~~~~~~~------------------------------~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 62 EADESFDVIISDPPLHHLV------------------------------EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ccCCceEEEEEccceeehh------------------------------hHHHHHHHHHHHHcCCCCEEEEE
Confidence 3667899999999999851 13457788889999999999986
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=7.4e-06 Score=74.42 Aligned_cols=79 Identities=8% Similarity=-0.016 Sum_probs=51.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~f~~gvpgsFy~ 118 (329)
+..+|+|+|||||..|..+...+ .+..+|+.-|.-.+.....-+.+. ..+..++.| ++..
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~--------------~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~g---d~~~ 138 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIV--------------GKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVG---DGTL 138 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhc--------------CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEEC---Cccc
Confidence 45799999999999998776422 223478888887655544333332 112234444 5545
Q ss_pred ccCCCCceeEEEeccceec
Q 037735 119 SLFPKSSLHFVHSSYTLHW 137 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhW 137 (329)
-+.+.+.+|+|++..+++.
T Consensus 139 ~~~~~~~fD~I~~~~~~~~ 157 (212)
T PRK13942 139 GYEENAPYDRIYVTAAGPD 157 (212)
T ss_pred CCCcCCCcCEEEECCCccc
Confidence 5566788999999877543
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.4e-06 Score=72.65 Aligned_cols=105 Identities=16% Similarity=0.184 Sum_probs=66.8
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeecccccccc---
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYS--- 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~--- 118 (329)
+..+|+|+|||+|..|..+.... .+..+++..|+.... ..+. ..++.+ ++.+
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~--------------~~~~~v~~vDis~~~------~~~~--i~~~~~---d~~~~~~ 86 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQV--------------GGKGRVIAVDLQPMK------PIEN--VDFIRG---DFTDEEV 86 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHh--------------CCCceEEEEeccccc------cCCC--ceEEEe---eCCChhH
Confidence 45689999999999888887522 122468888886532 1111 123333 3322
Q ss_pred -----ccCCCCceeEEEecccee----cccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceE
Q 037735 119 -----SLFPKSSLHFVHSSYTLH----WLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLA 189 (329)
Q Consensus 119 -----~lfp~~s~dl~~Ss~alh----WLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l 189 (329)
..+|.+++|+++|..+.| |.-+.+ ....+...+|....+.|+|||++
T Consensus 87 ~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~------------------------~~~~~~~~~l~~~~~~LkpgG~l 142 (188)
T TIGR00438 87 LNKIRERVGDDKVDVVMSDAAPNISGYWDIDHL------------------------RSIDLVELALDIAKEVLKPKGNF 142 (188)
T ss_pred HHHHHHHhCCCCccEEEcCCCCCCCCCccccHH------------------------HHHHHHHHHHHHHHHHccCCCEE
Confidence 136778999999976532 321111 01134568899999999999999
Q ss_pred EEEecc
Q 037735 190 ALVMFS 195 (329)
Q Consensus 190 ~~~~~g 195 (329)
++..+.
T Consensus 143 vi~~~~ 148 (188)
T TIGR00438 143 VVKVFQ 148 (188)
T ss_pred EEEEcc
Confidence 997643
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.12 E-value=1e-05 Score=72.98 Aligned_cols=97 Identities=12% Similarity=0.106 Sum_probs=61.9
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---Ccceeeeccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---SRSYYAAGVPGSFY 117 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~~~~f~~gvpgsFy 117 (329)
.+..+|+|+|||+|..|..+.. . . .+++.-|...+....+-+.+.. ...-+.. +++.
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~-~--------------~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~---~d~~ 136 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAH-L--------------V--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRH---GDGW 136 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHH-H--------------h--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEE---CCcc
Confidence 3457999999999999985543 1 0 1577788776555444333321 1112333 3454
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
+-+.+.+++|++++..+++++ | ..-.+.|+|||+|++...
T Consensus 137 ~~~~~~~~fD~I~~~~~~~~~---~----------------------------------~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 137 KGWPAYAPFDRILVTAAAPEI---P----------------------------------RALLEQLKEGGILVAPVG 176 (212)
T ss_pred cCCCcCCCcCEEEEccCchhh---h----------------------------------HHHHHhcCCCcEEEEEEc
Confidence 444445889999998876653 3 122467999999999875
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=98.12 E-value=7.9e-06 Score=74.93 Aligned_cols=123 Identities=12% Similarity=0.148 Sum_probs=74.3
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|..+..+.. . .|..+++..|.........-+.+. ..+--+.. +++.+
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~--------~-------~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~---~d~~~ 148 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAK--------E-------RPDARVTAVDISPEALAVARKNAARLGLDNVTFLQ---SDWFE 148 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHH--------H-------CCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEE---Cchhc
Confidence 346899999999999888874 2 234689999998776665433321 11122333 35644
Q ss_pred ccCCCCceeEEEeccceecccCCCCC-----CCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKV-----DGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~-----~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
.++++++|+|+|+--.+..++.... .+........ ....-.++..|++...+.|+|||.+++..
T Consensus 149 -~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~----------~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 149 -PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFG----------GEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred -cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcC----------CCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 5678999999997544432221100 0000000000 01112356789999999999999998854
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.4e-05 Score=72.16 Aligned_cols=153 Identities=18% Similarity=0.116 Sum_probs=94.5
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC----CCcceeeecccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP----QSRSYYAAGVPGSFYS 118 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~----~~~~~f~~gvpgsFy~ 118 (329)
-.-+|++|||||+|=-..- -.|--.|++-|=..|+=.-+-++.. ..-.+|+.|.+ +
T Consensus 77 K~~vLEvgcGtG~Nfkfy~----------------~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~g----e 136 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYP----------------WKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADG----E 136 (252)
T ss_pred ccceEEecccCCCCccccc----------------CCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeech----h
Confidence 4567999999999954331 1355689999976666444444332 21245777643 3
Q ss_pred cc--CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 119 SL--FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 119 ~l--fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
++ +|++|+|.|+....|- |.- |-.+-|+.-.+-|+|||+++|.=-|+
T Consensus 137 ~l~~l~d~s~DtVV~TlvLC--Sve-----------------------------~~~k~L~e~~rlLRpgG~iifiEHva 185 (252)
T KOG4300|consen 137 NLPQLADGSYDTVVCTLVLC--SVE-----------------------------DPVKQLNEVRRLLRPGGRIIFIEHVA 185 (252)
T ss_pred cCcccccCCeeeEEEEEEEe--ccC-----------------------------CHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 44 3999999999987774 321 22356999999999999999998887
Q ss_pred CCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEeec
Q 037735 197 PDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMTN 260 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~~ 260 (329)
..... ...+++...+-+-.+...| ..-+.+ .-+.|+++ .|++...+.++.
T Consensus 186 ~~y~~-----~n~i~q~v~ep~~~~~~dG-------C~ltrd-~~e~Leda-~f~~~~~kr~~~ 235 (252)
T KOG4300|consen 186 GEYGF-----WNRILQQVAEPLWHLESDG-------CVLTRD-TGELLEDA-EFSIDSCKRFNF 235 (252)
T ss_pred ccchH-----HHHHHHHHhchhhheeccc-------eEEehh-HHHHhhhc-ccccchhhcccC
Confidence 75321 1112322222222344555 122333 34456665 598888776544
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.08 E-value=8.7e-06 Score=73.76 Aligned_cols=116 Identities=16% Similarity=0.244 Sum_probs=69.0
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeecccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~l 120 (329)
++..+|||+|||.+..+..+- ....|.-=||...+ ..+-+ .+.-.-.
T Consensus 71 ~~~~viaD~GCGdA~la~~~~------------------~~~~V~SfDLva~n-----------~~Vta----cdia~vP 117 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVP------------------NKHKVHSFDLVAPN-----------PRVTA----CDIANVP 117 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH--------------------S---EEEEESS-SS-----------TTEEE----S-TTS-S
T ss_pred CCCEEEEECCCchHHHHHhcc------------------cCceEEEeeccCCC-----------CCEEE----ecCccCc
Confidence 556899999999998774331 11467777886422 11111 1443455
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCC
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGI 200 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~ 200 (329)
++++|+|+++.+.+|.= .||..|+.+-.|.|+|||.|.+.=.-
T Consensus 118 L~~~svDv~VfcLSLMG--------------------------------Tn~~~fi~EA~RvLK~~G~L~IAEV~----- 160 (219)
T PF05148_consen 118 LEDESVDVAVFCLSLMG--------------------------------TNWPDFIREANRVLKPGGILKIAEVK----- 160 (219)
T ss_dssp --TT-EEEEEEES---S--------------------------------S-HHHHHHHHHHHEEEEEEEEEEEEG-----
T ss_pred CCCCceeEEEEEhhhhC--------------------------------CCcHHHHHHHHheeccCcEEEEEEec-----
Confidence 89999999999988753 37789999999999999999987432
Q ss_pred cccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 201 PLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 201 ~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
-.+.+.+++...++.- ||++...+..
T Consensus 161 -------------------------------SRf~~~~~F~~~~~~~-GF~~~~~d~~ 186 (219)
T PF05148_consen 161 -------------------------------SRFENVKQFIKALKKL-GFKLKSKDES 186 (219)
T ss_dssp -------------------------------GG-S-HHHHHHHHHCT-TEEEEEEE--
T ss_pred -------------------------------ccCcCHHHHHHHHHHC-CCeEEecccC
Confidence 2245678888889888 5999876643
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.2e-05 Score=71.13 Aligned_cols=105 Identities=21% Similarity=0.315 Sum_probs=74.0
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeecccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~l 120 (329)
.+..+|+|+|+|+|..+..++. + .|.++++.-|||.. ....-+ ..+--| +||+|+ .-
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~--------~-------~P~l~~~v~Dlp~v-~~~~~~---~~rv~~---~~gd~f-~~ 155 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALAR--------A-------YPNLRATVFDLPEV-IEQAKE---ADRVEF---VPGDFF-DP 155 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHH--------H-------STTSEEEEEE-HHH-HCCHHH---TTTEEE---EES-TT-TC
T ss_pred cCccEEEeccCcchHHHHHHHH--------H-------CCCCcceeeccHhh-hhcccc---cccccc---ccccHH-hh
Confidence 3456899999999999988875 3 57789999999952 122222 112222 567999 77
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccC--ceEEEEecccCC
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPG--GLAALVMFSVPD 198 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pG--G~l~~~~~g~~~ 198 (329)
+|. .|+++-+..||=.++ +|-..+|+..++.|+|| |++++.=.-.++
T Consensus 156 ~P~--~D~~~l~~vLh~~~d-----------------------------~~~~~iL~~~~~al~pg~~g~llI~e~~~~~ 204 (241)
T PF00891_consen 156 LPV--ADVYLLRHVLHDWSD-----------------------------EDCVKILRNAAAALKPGKDGRLLIIEMVLPD 204 (241)
T ss_dssp CSS--ESEEEEESSGGGS-H-----------------------------HHHHHHHHHHHHHSEECTTEEEEEEEEEECS
T ss_pred hcc--ccceeeehhhhhcch-----------------------------HHHHHHHHHHHHHhCCCCCCeEEEEeeccCC
Confidence 787 999999999983232 24458899999999999 999998776554
Q ss_pred C
Q 037735 199 G 199 (329)
Q Consensus 199 ~ 199 (329)
.
T Consensus 205 ~ 205 (241)
T PF00891_consen 205 D 205 (241)
T ss_dssp S
T ss_pred C
Confidence 3
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.05 E-value=4e-05 Score=71.26 Aligned_cols=94 Identities=16% Similarity=0.170 Sum_probs=58.4
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccC
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLF 121 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lf 121 (329)
+..+|+|+|||+|..+..+.. . .+ ..|+.-|.........-+++.... +.... -+
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~--------~-------g~-~~v~giDis~~~l~~A~~n~~~~~------~~~~~---~~ 173 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAK--------L-------GA-KKVLAVDIDPQAVEAARENAELNG------VELNV---YL 173 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHH--------c-------CC-CeEEEEECCHHHHHHHHHHHHHcC------CCceE---EE
Confidence 457899999999987765532 1 12 258999998766655444332100 00000 01
Q ss_pred CCC--ceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 122 PKS--SLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 122 p~~--s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
+.+ ++|+++++...+. +..++..-.+.|+|||.++++.+
T Consensus 174 ~~~~~~fD~Vvani~~~~----------------------------------~~~l~~~~~~~LkpgG~lilsgi 214 (250)
T PRK00517 174 PQGDLKADVIVANILANP----------------------------------LLELAPDLARLLKPGGRLILSGI 214 (250)
T ss_pred ccCCCCcCEEEEcCcHHH----------------------------------HHHHHHHHHHhcCCCcEEEEEEC
Confidence 112 7899998743222 23568888899999999999754
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.9e-05 Score=73.44 Aligned_cols=124 Identities=16% Similarity=0.190 Sum_probs=83.9
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC----Ccceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ----SRSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~----~~~~f~~gvpgsF 116 (329)
+...+|+|+|||+|..++.+.+ ++ ++.++...++-..+.....+++.- .+-.++.++=..|
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~--------r~-------~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~ 107 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQ--------RT-------EKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEF 107 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhc--------cC-------CCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHh
Confidence 4478999999999999999976 31 236788888877776666666532 1223344322222
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
....+.+++|+|+|+ +| +++-... .++.+..+..+-+..-++..+++..++-|+|||.+.+..
T Consensus 108 -~~~~~~~~fD~Ii~N--------PP---yf~~~~~--~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 108 -LKALVFASFDLIICN--------PP---YFKQGSR--LNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred -hhcccccccCEEEeC--------CC---CCCCccc--cCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence 333455689999986 44 1111111 234456666677778899999999999999999999887
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.3e-05 Score=69.66 Aligned_cols=103 Identities=14% Similarity=0.056 Sum_probs=66.1
Q ss_pred ccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 115 SFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 115 sFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
+...-.++++++|++++++++||+.+ ...+|++.++.|+|||.|++.-+
T Consensus 34 d~~~lp~~~~~fD~v~~~~~l~~~~d-------------------------------~~~~l~ei~rvLkpGG~l~i~d~ 82 (160)
T PLN02232 34 DAIDLPFDDCEFDAVTMGYGLRNVVD-------------------------------RLRAMKEMYRVLKPGSRVSILDF 82 (160)
T ss_pred chhhCCCCCCCeeEEEecchhhcCCC-------------------------------HHHHHHHHHHHcCcCeEEEEEEC
Confidence 56444578999999999999999753 34789999999999999999988
Q ss_pred ccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCc----------ccCCCHHHHHHHHHhCCceEEeEEE
Q 037735 195 SVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEK----------MYNPTPKELEGIIQRNGNFTIERME 256 (329)
Q Consensus 195 g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~----------~y~ps~eE~~~~i~~~g~f~i~~~e 256 (329)
++++.... ..++.... . .-+.--|.+.... ..+++++|+.+.+++.| |+..+..
T Consensus 83 ~~~~~~~~-----~~~~~~~~-~-~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aG-F~~~~~~ 146 (160)
T PLN02232 83 NKSNQSVT-----TFMQGWMI-D-NVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAG-FSSACHY 146 (160)
T ss_pred CCCChHHH-----HHHHHHHc-c-chHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcC-CCcceEE
Confidence 86542110 00000000 0 0000001111111 35689999999999885 8866544
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.3e-05 Score=74.51 Aligned_cols=100 Identities=12% Similarity=0.067 Sum_probs=64.8
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC---cce-eeecccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS---RSY-YAAGVPGSFYS 118 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~---~~~-f~~gvpgsFy~ 118 (329)
..+|+|+|||+|..++.+.. . .+ .+|+..|+........-+++... ..+ +..+ + .
T Consensus 160 g~~VLDvGcGsG~lai~aa~--------~-------g~-~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~---~--~ 218 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAALK--------L-------GA-AKVVGIDIDPLAVESARKNAELNQVSDRLQVKLI---Y--L 218 (288)
T ss_pred CCEEEEeCCChhHHHHHHHH--------c-------CC-CeEEEEECCHHHHHHHHHHHHHcCCCcceEEEec---c--c
Confidence 47899999999998876542 1 11 37999999876655543332110 011 1111 1 1
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
..++++++|+++++...+++ ..++....+-|+|||.++++.+...
T Consensus 219 ~~~~~~~fDlVvan~~~~~l----------------------------------~~ll~~~~~~LkpgG~li~sgi~~~ 263 (288)
T TIGR00406 219 EQPIEGKADVIVANILAEVI----------------------------------KELYPQFSRLVKPGGWLILSGILET 263 (288)
T ss_pred ccccCCCceEEEEecCHHHH----------------------------------HHHHHHHHHHcCCCcEEEEEeCcHh
Confidence 12456789999997644332 3568888999999999999876543
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=5e-05 Score=72.55 Aligned_cols=105 Identities=14% Similarity=0.132 Sum_probs=69.9
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC-----Ccceeeecccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ-----SRSYYAAGVPGSF 116 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~-----~~~~f~~gvpgsF 116 (329)
.+.+|||+|||.|+.|..++..- . .|..+++.-|......+..-+.+.. .+--|..+. .
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~------~-------~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~D---a 186 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKH------H-------LPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTAD---V 186 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHh------c-------CCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECc---h
Confidence 67899999999999887765311 1 3556788889876443332222211 123466553 2
Q ss_pred ccccC-CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 117 YSSLF-PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 117 y~~lf-p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
.+ +. +.+.+|+|++. ++|-.++.+. .+.|+.-++-|+|||.+++.+
T Consensus 187 ~~-~~~~l~~FDlVF~~-ALi~~dk~~k-----------------------------~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 187 MD-VTESLKEYDVVFLA-ALVGMDKEEK-----------------------------VKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred hh-cccccCCcCEEEEe-cccccccccH-----------------------------HHHHHHHHHhcCCCcEEEEec
Confidence 22 22 24789999999 7665543321 377999999999999999988
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.8e-05 Score=79.59 Aligned_cols=104 Identities=24% Similarity=0.315 Sum_probs=64.9
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhh--hcCCCCcceeeecccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLF--KSLPQSRSYYAAGVPGSFYS 118 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf--~~l~~~~~~f~~gvpgsFy~ 118 (329)
....++||+|||+|.++..+++.= -..+.+-.+|--. .+.++. +.+|. ..|+.|+ .
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r~--------------V~t~s~a~~d~~~-~qvqfaleRGvpa-----~~~~~~s--~ 173 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLERN--------------VTTMSFAPNDEHE-AQVQFALERGVPA-----MIGVLGS--Q 173 (506)
T ss_pred CceEEEEeccceeehhHHHHhhCC--------------ceEEEcccccCCc-hhhhhhhhcCcch-----hhhhhcc--c
Confidence 455667999999999999987511 1112222333221 112211 22332 1222233 4
Q ss_pred cc-CCCCceeEEEecccee-cccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 119 SL-FPKSSLHFVHSSYTLH-WLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 119 ~l-fp~~s~dl~~Ss~alh-WLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
|| ||++++|++||+-|+- |.++-- .+|-.--|.|+|||+++++.+-.
T Consensus 174 rLPfp~~~fDmvHcsrc~i~W~~~~g-------------------------------~~l~evdRvLRpGGyfv~S~ppv 222 (506)
T PF03141_consen 174 RLPFPSNAFDMVHCSRCLIPWHPNDG-------------------------------FLLFEVDRVLRPGGYFVLSGPPV 222 (506)
T ss_pred cccCCccchhhhhcccccccchhccc-------------------------------ceeehhhhhhccCceEEecCCcc
Confidence 55 9999999999999875 755321 45778889999999999988653
Q ss_pred C
Q 037735 197 P 197 (329)
Q Consensus 197 ~ 197 (329)
.
T Consensus 223 ~ 223 (506)
T PF03141_consen 223 Y 223 (506)
T ss_pred c
Confidence 3
|
; GO: 0008168 methyltransferase activity |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.2e-05 Score=72.00 Aligned_cols=143 Identities=19% Similarity=0.284 Sum_probs=90.3
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhh-cCCCCcceeeecccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFK-SLPQSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~-~l~~~~~~f~~gvpgsFy~~l 120 (329)
...+++|+|||||-....+-.-. -.+.--|+..||...... .+.. ..+. +.--.| ...
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~a-----------------~~ltGvDiS~nMl~kA~eKg~YD--~L~~-Aea~~F-l~~ 183 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDMA-----------------DRLTGVDISENMLAKAHEKGLYD--TLYV-AEAVLF-LED 183 (287)
T ss_pred ccceeeecccCcCcccHhHHHHH-----------------hhccCCchhHHHHHHHHhccchH--HHHH-HHHHHH-hhh
Confidence 36789999999999888775422 246678999999765321 1111 0011 100013 222
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCC
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGI 200 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~ 200 (329)
.-+..+|+|.+.-.|-+|-.+ ..++..-+.-|+|||.+.||.=--++..
T Consensus 184 ~~~er~DLi~AaDVl~YlG~L-------------------------------e~~~~~aa~~L~~gGlfaFSvE~l~~~~ 232 (287)
T COG4976 184 LTQERFDLIVAADVLPYLGAL-------------------------------EGLFAGAAGLLAPGGLFAFSVETLPDDG 232 (287)
T ss_pred ccCCcccchhhhhHHHhhcch-------------------------------hhHHHHHHHhcCCCceEEEEecccCCCC
Confidence 334668888888887776544 4779999999999999999985322211
Q ss_pred cccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEeec
Q 037735 201 PLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMTN 260 (329)
Q Consensus 201 ~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~~ 260 (329)
. | .+.-+ .-|..+..=|++.++.. +|+++.++....
T Consensus 233 ~---------f-~l~ps-------------~RyAH~~~YVr~~l~~~-Gl~~i~~~~tti 268 (287)
T COG4976 233 G---------F-VLGPS-------------QRYAHSESYVRALLAAS-GLEVIAIEDTTI 268 (287)
T ss_pred C---------e-ecchh-------------hhhccchHHHHHHHHhc-CceEEEeecccc
Confidence 0 0 00001 14556777788888888 599999886543
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=4e-05 Score=69.89 Aligned_cols=123 Identities=13% Similarity=-0.032 Sum_probs=71.2
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--CCcceeeecccccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--QSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~~~~~f~~gvpgsFy~~l 120 (329)
..+|+|+|||+|.++..+.. . +..+++..|+........-+++. .....+.. +++.. .
T Consensus 37 ~~~vLDlGcG~G~~~~~la~--------~--------~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~---~d~~~-~ 96 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAA--------A--------GAGSVTAVDISRRAVRSARLNALLAGVDVDVRR---GDWAR-A 96 (223)
T ss_pred CCeEEEecCCHHHHHHHHHH--------c--------CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEE---Cchhh-h
Confidence 36899999999999887753 1 11378999998766554333221 11112333 45644 4
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
++++++|+|+++--.+..+.....+......+..+.. -..++..|+..-.+-|+|||++++....
T Consensus 97 ~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 97 VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPD----------GRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCc----------HHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 6788999999985443322211000000000110000 1124568899999999999999976543
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=97.88 E-value=7.8e-05 Score=74.67 Aligned_cols=129 Identities=16% Similarity=0.099 Sum_probs=79.7
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCc-ceeeecccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSR-SYYAAGVPGSFYSSL 120 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~-~~f~~gvpgsFy~~l 120 (329)
+..+|+|+|||+|.-|..+...+ +..+|+.+|...+....+-+++.... ..-+..+.++...-.
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~---------------~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~ 302 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELA---------------PQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPS 302 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHc---------------CCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccc
Confidence 34789999999999999887522 13589999998888777655543211 111111123332222
Q ss_pred --CCCCceeEEEe---ccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 121 --FPKSSLHFVHS---SYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 121 --fp~~s~dl~~S---s~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
.+.+++|.|++ ++...-+.+.|+..|. .++..+.+.- +.-..+|..-++-|+|||.|+.++..
T Consensus 303 ~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~-------~~~~~~~~l~-----~lQ~~lL~~a~~~LkpgG~lvystcs 370 (426)
T TIGR00563 303 QWAENEQFDRILLDAPCSATGVIRRHPDIKWL-------RKPRDIAELA-----ELQSEILDAIWPLLKTGGTLVYATCS 370 (426)
T ss_pred ccccccccCEEEEcCCCCCCcccccCcchhhc-------CCHHHHHHHH-----HHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 25778999985 3444444455543222 1223332222 23358899999999999999999976
Q ss_pred cC
Q 037735 196 VP 197 (329)
Q Consensus 196 ~~ 197 (329)
-.
T Consensus 371 ~~ 372 (426)
T TIGR00563 371 VL 372 (426)
T ss_pred CC
Confidence 53
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=6.7e-05 Score=75.60 Aligned_cols=124 Identities=12% Similarity=0.064 Sum_probs=76.3
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---Ccceeeeccccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---SRSYYAAGVPGSFYSS 119 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~~~~f~~gvpgsFy~~ 119 (329)
..+|+|+|||+|..|..+...+ ....+|+..|+.......+-+++.. ..-.+..+ +. ..
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~--------------~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~---Da-~~ 312 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELM--------------QNRGQITAVDRYPQKLEKIRSHASALGITIIETIEG---DA-RS 312 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHh--------------CCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeC---cc-cc
Confidence 4689999999999998887522 1224899999998887766544421 11234444 33 23
Q ss_pred cCCCCceeEEEe----ccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 120 LFPKSSLHFVHS----SYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 120 lfp~~s~dl~~S----s~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
+.|++++|.|+. +.+-+|-. -|...| ..++..+ +. ..+.-..+|..-++-|+|||+|+.+++.
T Consensus 313 ~~~~~~fD~Vl~D~Pcsg~g~~~r-~p~~~~-------~~~~~~~-~~----l~~~q~~iL~~a~~~lkpgG~lvystcs 379 (445)
T PRK14904 313 FSPEEQPDAILLDAPCTGTGVLGR-RAELRW-------KLTPEKL-AE----LVGLQAELLDHAASLLKPGGVLVYATCS 379 (445)
T ss_pred cccCCCCCEEEEcCCCCCcchhhc-Ccchhh-------cCCHHHH-HH----HHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 347788999973 22222221 221101 1112222 21 2234457999999999999999999976
Q ss_pred cC
Q 037735 196 VP 197 (329)
Q Consensus 196 ~~ 197 (329)
..
T Consensus 380 ~~ 381 (445)
T PRK14904 380 IE 381 (445)
T ss_pred CC
Confidence 54
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=5e-05 Score=76.27 Aligned_cols=128 Identities=13% Similarity=0.088 Sum_probs=78.6
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC--cc-eeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS--RS-YYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~--~~-~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|.-|..+.... .+..+|+.+|+..+....+-+++... .+ .+..+....+ .
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~--------------~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l-~ 301 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELM--------------KDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERL-T 301 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHc--------------CCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhh-h
Confidence 34689999999999999987522 23358999999988777665444221 12 2444432221 1
Q ss_pred ccCCCCceeEEEe---ccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 119 SLFPKSSLHFVHS---SYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 119 ~lfp~~s~dl~~S---s~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
. +.++++|.|+. ++.+..+.+-|...|. .+++.. ....+.-...|..-++-|+|||.|+.++..
T Consensus 302 ~-~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~--------~~~~~~----~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 302 E-YVQDTFDRILVDAPCTSLGTARNHPEVLRR--------VNKEDF----KKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred h-hhhccCCEEEECCCCCCCccccCChHHHHh--------CCHHHH----HHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 1 23577999985 3444444444422111 111111 223334468899999999999999999987
Q ss_pred cC
Q 037735 196 VP 197 (329)
Q Consensus 196 ~~ 197 (329)
..
T Consensus 369 ~~ 370 (431)
T PRK14903 369 VT 370 (431)
T ss_pred CC
Confidence 44
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=97.86 E-value=5.1e-05 Score=68.66 Aligned_cols=157 Identities=18% Similarity=0.163 Sum_probs=96.0
Q ss_pred EEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhc-----CCCC-cceee--ecccccc
Q 037735 45 RIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKS-----LPQS-RSYYA--AGVPGSF 116 (329)
Q Consensus 45 ~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~-----l~~~-~~~f~--~gvpgsF 116 (329)
+|||+|||||--...+... .|.+++-=+|...+-+.++-.- +++- .+..+ +..+-+.
T Consensus 28 ~vLEiaSGtGqHa~~FA~~---------------lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~ 92 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQA---------------LPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPW 92 (204)
T ss_pred eEEEEcCCccHHHHHHHHH---------------CCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCcc
Confidence 7999999999988888652 4668888899988777665322 1111 11111 1000011
Q ss_pred c-cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 117 Y-SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 117 y-~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
- .-.++.+++|.++|.+.+|-.+-- .-..+|+.-++.|+|||.|++--+=
T Consensus 93 ~~~~~~~~~~~D~i~~~N~lHI~p~~-----------------------------~~~~lf~~a~~~L~~gG~L~~YGPF 143 (204)
T PF06080_consen 93 ELPAPLSPESFDAIFCINMLHISPWS-----------------------------AVEGLFAGAARLLKPGGLLFLYGPF 143 (204)
T ss_pred ccccccCCCCcceeeehhHHHhcCHH-----------------------------HHHHHHHHHHHhCCCCCEEEEeCCc
Confidence 0 011257799999999999984421 1237799999999999998876653
Q ss_pred cCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 196 VPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
..++...++ ++. .+-..|++-- - .+-+++.+++.++-...| ++.+....+
T Consensus 144 ~~~G~~ts~-SN~----~FD~sLr~rd-p------~~GiRD~e~v~~lA~~~G-L~l~~~~~M 193 (204)
T PF06080_consen 144 NRDGKFTSE-SNA----AFDASLRSRD-P------EWGIRDIEDVEALAAAHG-LELEEDIDM 193 (204)
T ss_pred ccCCEeCCc-HHH----HHHHHHhcCC-C------CcCccCHHHHHHHHHHCC-CccCccccc
Confidence 334433222 121 2233333221 0 155699999999888774 777655544
|
The function of this family is unknown. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00016 Score=63.15 Aligned_cols=119 Identities=13% Similarity=0.112 Sum_probs=69.4
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC----CCc-ceeeeccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP----QSR-SYYAAGVPGSFY 117 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~----~~~-~~f~~gvpgsFy 117 (329)
..+|+|+|||+|..+..+.. + ..+++..|...+.....-+++. ..+ ..+.. +++.
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~--------~---------~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~---~d~~ 83 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAK--------N---------GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIR---SDLF 83 (188)
T ss_pred CCEEEEEccccCHHHHHHHh--------h---------cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEe---cccc
Confidence 45899999999998887764 1 1478999988766655433321 111 22332 4565
Q ss_pred cccCCCCceeEEEeccceecccCCCCC-CCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKV-DGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~-~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
+. ++++++|+++++..+.+-...+.. +|-.-........ ...+..|++...+.|+|||.+++..
T Consensus 84 ~~-~~~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 84 EP-FRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDG-----------REVIDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred cc-ccccCceEEEECCCcCCCCchhhhhhhhhhhhccCcCh-----------HHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 54 456689999987655431111000 0000000000000 1235688999999999999998876
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.83 E-value=5.2e-05 Score=70.62 Aligned_cols=86 Identities=21% Similarity=0.280 Sum_probs=62.6
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeecccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~l 120 (329)
++.++|+|+|||.+..+.. .+ -.|+--||..-+ ..+-+ .+.-+-.
T Consensus 179 ~~~~vIaD~GCGEakiA~~-------------------~~-~kV~SfDL~a~~-----------~~V~~----cDm~~vP 223 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIASS-------------------ER-HKVHSFDLVAVN-----------ERVIA----CDMRNVP 223 (325)
T ss_pred cCceEEEecccchhhhhhc-------------------cc-cceeeeeeecCC-----------Cceee----ccccCCc
Confidence 6789999999999886651 11 256666775311 12322 2554555
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
++++|+|+++.+.+|.= .||..|+.+..|.|+|||.|.+.=
T Consensus 224 l~d~svDvaV~CLSLMg--------------------------------tn~~df~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 224 LEDESVDVAVFCLSLMG--------------------------------TNLADFIKEANRILKPGGLLYIAE 264 (325)
T ss_pred CccCcccEEEeeHhhhc--------------------------------ccHHHHHHHHHHHhccCceEEEEe
Confidence 89999999998877653 378899999999999999999875
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00016 Score=72.44 Aligned_cols=126 Identities=15% Similarity=0.116 Sum_probs=74.7
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC--cceeeeccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS--RSYYAAGVPGSFYSS 119 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~--~~~f~~gvpgsFy~~ 119 (329)
+..+|+|+|||+|..|..+.+.. +...|+..|+.......+-+++... ...+..+..... ..
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~---------------~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~-~~ 307 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELA---------------PQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDP-AQ 307 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHc---------------CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccc-hh
Confidence 34689999999999998887522 1247999999887766664444221 123444432211 12
Q ss_pred cCCCCceeEEEec---cceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 120 LFPKSSLHFVHSS---YTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 120 lfp~~s~dl~~Ss---~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
.++++++|.|++. +...-+.+-|...|. .. ++-.+ .+......+|..-++.|+|||.|++++..
T Consensus 308 ~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~-------~~-~~~l~----~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 308 WWDGQPFDRILLDAPCSATGVIRRHPDIKWL-------RR-PEDIA----ALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred hcccCCCCEEEECCCCCcccccccCcccccc-------CC-HHHHH----HHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 2456789999842 122111222322111 11 12111 22234468899999999999999999864
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=9.1e-05 Score=66.32 Aligned_cols=102 Identities=16% Similarity=0.162 Sum_probs=64.9
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---C-CCcceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---P-QSRSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~-~~~~~f~~gvpgsFy 117 (329)
...+|+|+|||+|..+..+.... .+..+|+..|........+-+++ . ...-.++.+ ++.
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~--------------~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~---d~~ 102 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLV--------------GETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKG---EAP 102 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHh--------------CCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEe---chh
Confidence 45789999999999998876422 23458999999766655432222 1 112233443 443
Q ss_pred cccC-CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 118 SSLF-PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 118 ~~lf-p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
+-+. .++++|.+++.... .++..+|+...+.|+|||++++...
T Consensus 103 ~~l~~~~~~~D~V~~~~~~----------------------------------~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (198)
T PRK00377 103 EILFTINEKFDRIFIGGGS----------------------------------EKLKEIISASWEIIKKGGRIVIDAI 146 (198)
T ss_pred hhHhhcCCCCCEEEECCCc----------------------------------ccHHHHHHHHHHHcCCCcEEEEEee
Confidence 3221 23578998875311 1334779999999999999997553
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00014 Score=73.15 Aligned_cols=123 Identities=12% Similarity=0.068 Sum_probs=73.2
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---Ccceeeeccccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---SRSYYAAGVPGSFYSS 119 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~~~~f~~gvpgsFy~~ 119 (329)
..+|+|+|||+|..|..+.+.. .+..+|+..|+..+....+-+++.. ..-.++.+ ++..-
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~--------------~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~---D~~~~ 313 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELL--------------KNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKAL---DARKV 313 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHh--------------CCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeC---Ccccc
Confidence 4689999999999999887522 2335899999987766655444321 11223444 34221
Q ss_pred --cCCCCceeEEEec---cceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 120 --LFPKSSLHFVHSS---YTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 120 --lfp~~s~dl~~Ss---~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
.++ +++|+|++. +....+.+-|...|.+ ++..+.+ ..+--..+|..-.+-|+|||.|+.++.
T Consensus 314 ~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~-------~~~~~~~-----l~~~q~~iL~~a~~~LkpGG~lvystc 380 (444)
T PRK14902 314 HEKFA-EKFDKILVDAPCSGLGVIRRKPDIKYNK-------TKEDIES-----LQEIQLEILESVAQYLKKGGILVYSTC 380 (444)
T ss_pred cchhc-ccCCEEEEcCCCCCCeeeccCcchhhcC-------CHHHHHH-----HHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence 133 789999864 2333333333221211 1112211 112224689999999999999998875
Q ss_pred c
Q 037735 195 S 195 (329)
Q Consensus 195 g 195 (329)
.
T Consensus 381 s 381 (444)
T PRK14902 381 T 381 (444)
T ss_pred C
Confidence 4
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=97.74 E-value=6.2e-05 Score=60.77 Aligned_cols=109 Identities=20% Similarity=0.277 Sum_probs=67.1
Q ss_pred eEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC----Ccceeeeccccccccc
Q 037735 44 FRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ----SRSYYAAGVPGSFYSS 119 (329)
Q Consensus 44 ~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~----~~~~f~~gvpgsFy~~ 119 (329)
.+|+|+|||+|..++.+.. . . ..+++..|+-..-.......++. .+.-+..+ ++..-
T Consensus 2 ~~vlD~~~G~G~~~~~~~~--------~-------~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~---D~~~~ 62 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALR--------R-------G-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVG---DARDL 62 (117)
T ss_dssp EEEEEETSTTCHHHHHHHH--------H-------C-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEES---HHHHH
T ss_pred CEEEEcCcchHHHHHHHHH--------H-------C-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEEC---chhhc
Confidence 5899999999998888875 2 1 25899999854222222222221 12334554 34333
Q ss_pred --cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 120 --LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 120 --lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
.++++++|+|+++-=.......+ ..-.++...|++...+-|+|||.+++.+.
T Consensus 63 ~~~~~~~~~D~Iv~npP~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 63 PEPLPDGKFDLIVTNPPYGPRSGDK-----------------------AALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp HHTCTTT-EEEEEE--STTSBTT---------------------------GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhccCceeEEEEECCCCccccccc-----------------------hhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 37889999999975443221111 01122567999999999999999999874
|
... |
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00014 Score=69.11 Aligned_cols=109 Identities=16% Similarity=0.153 Sum_probs=71.2
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--------CCcceeeecc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--------QSRSYYAAGV 112 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--------~~~~~f~~gv 112 (329)
+++.+|||+|||+|..+..+++ + .+.-+|...|+-.+.....-+.++ ..+--++.+.
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~--------~-------~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~D 139 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLK--------H-------PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGD 139 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHc--------C-------CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECc
Confidence 5678999999999999888864 1 122378888987665544433232 1123355665
Q ss_pred ccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEE
Q 037735 113 PGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALV 192 (329)
Q Consensus 113 pgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~ 192 (329)
+..|-.. +++++|+|++-.+-+|. |. ...|. ..|++...+-|+|||+|++.
T Consensus 140 a~~~l~~--~~~~yDvIi~D~~dp~~---~~-----------------~~l~t-------~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 140 GIKFVAE--TENSFDVIIVDSTDPVG---PA-----------------EGLFT-------KEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred hHHHHhh--CCCcccEEEECCCCCCC---ch-----------------hhhhH-------HHHHHHHHHhcCCCcEEEEe
Confidence 4444333 57889999997665551 10 01122 37899999999999999875
Q ss_pred e
Q 037735 193 M 193 (329)
Q Consensus 193 ~ 193 (329)
.
T Consensus 191 ~ 191 (283)
T PRK00811 191 S 191 (283)
T ss_pred C
Confidence 3
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00016 Score=68.63 Aligned_cols=121 Identities=17% Similarity=0.164 Sum_probs=71.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC----Ccceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ----SRSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~----~~~~f~~gvpgsFy 117 (329)
++.+|+|+|||+|..+..+.. + .|..+++..|+........-++... .+--|..+ +++
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~--------~-------~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~---D~~ 182 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAY--------A-------FPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQS---DLF 182 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHH--------H-------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC---chh
Confidence 346899999999999998875 2 2446899999987666554444321 11234443 554
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHH----HHHH--HHHhhcHHHHHHHHHHHhccCceEEE
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVM----EAYA--AQFNNDFQTFLNTRAQELVPGGLAAL 191 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~----~ay~--~q~~~D~~~FL~~ra~eL~pGG~l~~ 191 (329)
+. +|++++|+++|+ +|-...+. +...++++. .|.. +..-.....|++...+.|+|||++++
T Consensus 183 ~~-~~~~~fD~Iv~N--------PPy~~~~~----~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 183 AA-LPGRKYDLIVSN--------PPYVDAED----MADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV 249 (284)
T ss_pred hc-cCCCCccEEEEC--------CCCCCccc----hhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 43 466789999987 33110000 000111110 0000 00112345789999999999999987
Q ss_pred Ee
Q 037735 192 VM 193 (329)
Q Consensus 192 ~~ 193 (329)
-+
T Consensus 250 e~ 251 (284)
T TIGR03533 250 EV 251 (284)
T ss_pred EE
Confidence 65
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00016 Score=64.83 Aligned_cols=142 Identities=18% Similarity=0.244 Sum_probs=88.7
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHh-hhhcCCCCcceeeecccccccccc-
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNT-LFKSLPQSRSYYAAGVPGSFYSSL- 120 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~-lf~~l~~~~~~f~~gvpgsFy~~l- 120 (329)
-.||||+|||.|.+-..|.+ . ...+.+.-++-..-... +-+.++ + +-++..+-|
T Consensus 14 gsrVLDLGCGdG~LL~~L~~--------~--------k~v~g~GvEid~~~v~~cv~rGv~----V----iq~Dld~gL~ 69 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLKD--------E--------KQVDGYGVEIDPDNVAACVARGVS----V----IQGDLDEGLA 69 (193)
T ss_pred CCEEEecCCCchHHHHHHHH--------h--------cCCeEEEEecCHHHHHHHHHcCCC----E----EECCHHHhHh
Confidence 48999999999986555542 1 12456666654322222 222222 1 334555555
Q ss_pred -CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCC
Q 037735 121 -FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDG 199 (329)
Q Consensus 121 -fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~ 199 (329)
||++|+|.|+-|-|||=+.++. ..|++ -|+-|...+++++.=..
T Consensus 70 ~f~d~sFD~VIlsqtLQ~~~~P~-------------------------------~vL~E---mlRVgr~~IVsFPNFg~- 114 (193)
T PF07021_consen 70 DFPDQSFDYVILSQTLQAVRRPD-------------------------------EVLEE---MLRVGRRAIVSFPNFGH- 114 (193)
T ss_pred hCCCCCccEEehHhHHHhHhHHH-------------------------------HHHHH---HHHhcCeEEEEecChHH-
Confidence 8999999999999999876532 23443 36778888888853221
Q ss_pred CcccCCcccchHHHHHHHHHHHHhcCCcCCCc-----------ccCCCHHHHHHHHHhCCceEEeEEEEee
Q 037735 200 IPLVNNAAGSFYNTFGSCLVELTKMGILSKEK-----------MYNPTPKELEGIIQRNGNFTIERMEKMT 259 (329)
Q Consensus 200 ~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~-----------~y~ps~eE~~~~i~~~g~f~i~~~e~~~ 259 (329)
|. .-..|.-.|.....+ +.+.|..++++..++. +++|++-..+.
T Consensus 115 -----------W~----~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~~~-~i~I~~~~~~~ 169 (193)
T PF07021_consen 115 -----------WR----NRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCREL-GIRIEERVFLD 169 (193)
T ss_pred -----------HH----HHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHHHC-CCEEEEEEEEc
Confidence 21 112333446654443 4556999999999988 59988766654
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00034 Score=65.22 Aligned_cols=123 Identities=14% Similarity=0.195 Sum_probs=69.7
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|..+..+... .|..+++..|.........-+++. ..+..+..+ +++.
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~---------------~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~---d~~~ 169 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKE---------------RPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQG---DWFE 169 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHH---------------CCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEc---cccC
Confidence 4578999999999988888652 234689999998766555444332 112233333 4433
Q ss_pred ccCCCCceeEEEecccee---cccCCCCC--CCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 119 SLFPKSSLHFVHSSYTLH---WLSKVPKV--DGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alh---WLs~~p~~--~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
.++++++|+++|+--.. -...++.. ++..-.....+ ...-.++..|++...+-|+|||.+++..
T Consensus 170 -~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g----------~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 170 -PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGG----------EDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred -cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCC----------CCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 23468999999862110 00000000 00000000000 0012356688999999999999999844
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00022 Score=67.55 Aligned_cols=121 Identities=12% Similarity=0.088 Sum_probs=69.3
Q ss_pred eEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---C-Ccceeeeccccccccc
Q 037735 44 FRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---Q-SRSYYAAGVPGSFYSS 119 (329)
Q Consensus 44 ~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~-~~~~f~~gvpgsFy~~ 119 (329)
.+|+|+|||+|..++.+.. . .|..+++..|+........-++.. - .+-.|.. +++++.
T Consensus 116 ~~vLDlG~GsG~i~l~la~--------~-------~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~---~d~~~~ 177 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAY--------E-------FPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQ---SNLFEP 177 (284)
T ss_pred CEEEEEeccHhHHHHHHHH--------H-------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---Cchhcc
Confidence 6899999999998888864 2 234689999997665554444321 1 1123444 356553
Q ss_pred cCCCCceeEEEeccceecccC---CCCC-CCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 120 LFPKSSLHFVHSSYTLHWLSK---VPKV-DGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~---~p~~-~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
+|++++|+++|+--..--++ .|.. .+..... ..+.. + .-.+...+++.-.+.|+|||+|++-+
T Consensus 178 -~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~A-L~gg~-d--------gl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 178 -LAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLA-LVGGD-D--------GLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred -CcCCCccEEEECCCCCCcchhhcCCcccccCcHHH-hcCCC-c--------HHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 45568999999722111110 0100 0000000 00000 0 11256688999999999999998766
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00018 Score=69.58 Aligned_cols=113 Identities=12% Similarity=0.020 Sum_probs=68.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--Ccc-eeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--SRS-YYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--~~~-~f~~gvpgsFy~ 118 (329)
+..+|+|.|||||..+..... ....++..|.-..+....-.++.. ... .+.. +++.+
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~-----------------~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~---~D~~~ 241 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGL-----------------MGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKR---GDATK 241 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHH-----------------hCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEe---cchhc
Confidence 346899999999986544321 114799999987776654444321 112 1223 46654
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
..++++++|+++++--..--+..+ .. ....-...+|+.-++.|+|||++++.+...
T Consensus 242 l~~~~~~~D~Iv~dPPyg~~~~~~------------~~----------~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 242 LPLSSESVDAIATDPPYGRSTTAA------------GD----------GLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred CCcccCCCCEEEECCCCcCccccc------------CC----------chHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 446678999999852221100000 00 001123578999999999999999988654
|
This family is found exclusively in the Archaea. |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00041 Score=69.74 Aligned_cols=126 Identities=14% Similarity=0.097 Sum_probs=73.8
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---Ccceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---SRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~~~~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|..|..+.+.+ .+..+|+..|........+-+++.. ..-.++.+....+..
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~--------------~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~ 317 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELM--------------GDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLE 317 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHh--------------CCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccc
Confidence 34689999999999999887522 2235799999987776665444321 112344443222211
Q ss_pred cc-CCCCceeEEEeccceecccCCCCCCCCccce------eecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEE
Q 037735 119 SL-FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSI------QTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAAL 191 (329)
Q Consensus 119 ~l-fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i------~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~ 191 (329)
.. ++++++|.|+. ++||+ .-|.+ ....+ ++..+. ..+.-..+|..-++-|+|||.|+.
T Consensus 318 ~~~~~~~~fD~Vl~--------DaPCS--g~G~~~r~p~~~~~~~-~~~~~~----l~~~Q~~iL~~a~~~lkpgG~lvy 382 (434)
T PRK14901 318 LKPQWRGYFDRILL--------DAPCS--GLGTLHRHPDARWRQT-PEKIQE----LAPLQAELLESLAPLLKPGGTLVY 382 (434)
T ss_pred ccccccccCCEEEE--------eCCCC--cccccccCcchhhhCC-HHHHHH----HHHHHHHHHHHHHHhcCCCCEEEE
Confidence 11 34678998874 34443 00110 00111 222222 223346889999999999999999
Q ss_pred Eeccc
Q 037735 192 VMFSV 196 (329)
Q Consensus 192 ~~~g~ 196 (329)
++...
T Consensus 383 stcsi 387 (434)
T PRK14901 383 ATCTL 387 (434)
T ss_pred EeCCC
Confidence 88653
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00033 Score=69.90 Aligned_cols=120 Identities=18% Similarity=0.231 Sum_probs=68.9
Q ss_pred eEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--CcceeeeccccccccccC
Q 037735 44 FRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--SRSYYAAGVPGSFYSSLF 121 (329)
Q Consensus 44 ~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--~~~~f~~gvpgsFy~~lf 121 (329)
.+|+|+|||||..++.+.. . .|..+++..|+........-++... .+-.|+. +++.+..+
T Consensus 253 ~rVLDLGcGSG~IaiaLA~--------~-------~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~---gDl~e~~l 314 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVAL--------E-------RPDAFVRASDISPPALETARKNAADLGARVEFAH---GSWFDTDM 314 (423)
T ss_pred CEEEEEeChhhHHHHHHHH--------h-------CCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEE---cchhcccc
Confidence 5899999999999988764 1 2446899999987776655444321 1223444 45655444
Q ss_pred C-CCceeEEEeccceecccCCCCCCCCccceeecCCcHHH----HHHHHH--HHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 122 P-KSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEV----MEAYAA--QFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 122 p-~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~----~~ay~~--q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
| .+++|+++|+- |-....+ . ...++++ ..|... ---..+.++++.-.+.|+|||.+++-.
T Consensus 315 ~~~~~FDLIVSNP--------PYI~~~e--~--~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 315 PSEGKWDIIVSNP--------PYIENGD--K--HLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred ccCCCccEEEECC--------CCCCcch--h--hhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 4 46899999963 3110000 0 0000000 011100 000125578888889999999987644
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00019 Score=64.65 Aligned_cols=111 Identities=16% Similarity=0.274 Sum_probs=72.6
Q ss_pred EEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--CCcc-eeeeccccccccccC
Q 037735 45 RIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--QSRS-YYAAGVPGSFYSSLF 121 (329)
Q Consensus 45 ~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~~~~-~f~~gvpgsFy~~lf 121 (329)
.++|+|||.|.....+.. . .|+..++.-|...+-...+.+.+. ...+ .++.+....+...++
T Consensus 20 l~lEIG~G~G~~l~~~A~--------~-------~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~ 84 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAK--------R-------NPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLF 84 (195)
T ss_dssp EEEEET-TTSHHHHHHHH--------H-------STTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHS
T ss_pred eEEEecCCCCHHHHHHHH--------H-------CCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcc
Confidence 889999999999888864 2 577899999998766555444321 1223 466666666678889
Q ss_pred CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 122 PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 122 p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
|++|++-++=++-==|-.+-. .|-++.- ..||..-++.|+|||.+.+.|
T Consensus 85 ~~~~v~~i~i~FPDPWpK~rH----~krRl~~-------------------~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 85 PPGSVDRIYINFPDPWPKKRH----HKRRLVN-------------------PEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp TTTSEEEEEEES-----SGGG----GGGSTTS-------------------HHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCchheEEEeCCCCCcccch----hhhhcCC-------------------chHHHHHHHHcCCCCEEEEEe
Confidence 999999888776555522111 1111111 278999999999999998877
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00037 Score=67.05 Aligned_cols=114 Identities=12% Similarity=0.136 Sum_probs=68.7
Q ss_pred eEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC----Ccceeeeccccccccc
Q 037735 44 FRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ----SRSYYAAGVPGSFYSS 119 (329)
Q Consensus 44 ~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~----~~~~f~~gvpgsFy~~ 119 (329)
.+|+|+|||+|..++.+.. . .|..+|+..|+........-++... .+-.|..+ ++.+.
T Consensus 135 ~~VLDlG~GsG~iai~la~--------~-------~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~---D~~~~ 196 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAY--------A-------FPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIES---DLFAA 196 (307)
T ss_pred CEEEEEechhhHHHHHHHH--------H-------CCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEEC---chhhh
Confidence 6899999999999888864 2 3446899999987666554444321 12234443 55543
Q ss_pred cCCCCceeEEEecc------ce-----ecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCce
Q 037735 120 LFPKSSLHFVHSSY------TL-----HWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGL 188 (329)
Q Consensus 120 lfp~~s~dl~~Ss~------al-----hWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~ 188 (329)
+|++++|+++|+- .+ .|. .-|.. ... +... = -.....+++...+-|+|||+
T Consensus 197 -l~~~~fDlIvsNPPyi~~~~~~~l~~~~~-~eP~~------AL~-gg~d-G--------l~~~~~i~~~a~~~L~pgG~ 258 (307)
T PRK11805 197 -LPGRRYDLIVSNPPYVDAEDMADLPAEYR-HEPEL------ALA-AGDD-G--------LDLVRRILAEAPDYLTEDGV 258 (307)
T ss_pred -CCCCCccEEEECCCCCCccchhhcCHhhc-cCccc------eee-CCCc-h--------HHHHHHHHHHHHHhcCCCCE
Confidence 4667899999971 00 011 01100 000 0000 0 01234789999999999999
Q ss_pred EEEEe
Q 037735 189 AALVM 193 (329)
Q Consensus 189 l~~~~ 193 (329)
+++-+
T Consensus 259 l~~E~ 263 (307)
T PRK11805 259 LVVEV 263 (307)
T ss_pred EEEEE
Confidence 99864
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00025 Score=66.63 Aligned_cols=113 Identities=11% Similarity=0.070 Sum_probs=70.9
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC--CC--Ccceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL--PQ--SRSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l--~~--~~~~f~~gvpgsF 116 (329)
+.+.+|+|+|||+|..+..+.. + .|..+++..|+-.......-+.+ +. .+--+..|....|
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~--------~-------~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~ 129 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYT--------Y-------LPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEY 129 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHH--------h-------CCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHH
Confidence 4567899999999998887764 2 35568899999655544332222 21 1223455654455
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
..+. ++++|+|+... .+-- ..|.. -.-..|++...+-|+|||+++++..++
T Consensus 130 l~~~--~~~yD~I~~D~-~~~~-~~~~~-------------------------l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 130 IAVH--RHSTDVILVDG-FDGE-GIIDA-------------------------LCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred HHhC--CCCCCEEEEeC-CCCC-CCccc-------------------------cCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 4332 35799998752 2111 11211 001388999999999999999988765
Q ss_pred C
Q 037735 197 P 197 (329)
Q Consensus 197 ~ 197 (329)
+
T Consensus 181 ~ 181 (262)
T PRK04457 181 D 181 (262)
T ss_pred c
Confidence 4
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00069 Score=63.23 Aligned_cols=121 Identities=14% Similarity=0.175 Sum_probs=69.0
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccC-
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLF- 121 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lf- 121 (329)
+.+|+|+|||+|..++.+.+ . .|..+++..|.........-+++.....-|..+ ++.+.+.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~--------~-------~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~---D~~~~l~~ 148 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAA--------A-------LDGIELHAADIDPAAVRCARRNLADAGGTVHEG---DLYDALPT 148 (251)
T ss_pred CCEEEEecCchHHHHHHHHH--------h-------CCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEe---echhhcch
Confidence 46899999999999998875 2 233579999997766665554442211123333 4443221
Q ss_pred -CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHH-----HH--HHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 122 -PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEA-----YA--AQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 122 -p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~a-----y~--~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
..+++|+++|+ +|..... . ....++++.+. .. .....-+..++..-.+-|+|||++++.+
T Consensus 149 ~~~~~fDlVv~N--------PPy~~~~--~--~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 149 ALRGRVDILAAN--------APYVPTD--A--IALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred hcCCCEeEEEEC--------CCCCCch--h--hhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 13579999876 3311000 0 00112222110 00 0011124588888889999999999876
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0007 Score=60.36 Aligned_cols=43 Identities=16% Similarity=0.081 Sum_probs=31.2
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhh
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFK 99 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~ 99 (329)
...+|+|+|||+|..|..+.. . .|..+|+.-|+.......+-+
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~--------~-------~~~~~V~~vD~s~~~~~~a~~ 82 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGL--------L-------CPKGRVIAIERDEEVVNLIRR 82 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHH--------H-------CCCCEEEEEeCCHHHHHHHHH
Confidence 346899999999999988853 1 234689999997655554433
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00075 Score=69.46 Aligned_cols=150 Identities=14% Similarity=0.053 Sum_probs=88.4
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhh--cCC--------CCcceeee
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFK--SLP--------QSRSYYAA 110 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~--~l~--------~~~~~f~~ 110 (329)
+++.+|+|+|||+|..+..+++ + .+..++...|+-.+.....-+ .++ +.+--++.
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~--------~-------~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~ 360 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK--------Y-------PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVN 360 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh--------C-------CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEE
Confidence 4578999999999998877763 1 121478888887665554433 111 11223455
Q ss_pred ccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEE
Q 037735 111 GVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAA 190 (329)
Q Consensus 111 gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~ 190 (329)
++...|... .++++|+|++...-.|-.. ..+.|. ..|++...+.|+|||.++
T Consensus 361 ~Da~~~l~~--~~~~fDvIi~D~~~~~~~~-------------------~~~L~t-------~ef~~~~~~~L~pgG~lv 412 (521)
T PRK03612 361 DDAFNWLRK--LAEKFDVIIVDLPDPSNPA-------------------LGKLYS-------VEFYRLLKRRLAPDGLLV 412 (521)
T ss_pred ChHHHHHHh--CCCCCCEEEEeCCCCCCcc-------------------hhccch-------HHHHHHHHHhcCCCeEEE
Confidence 554444322 3468999999854433110 011122 267888889999999999
Q ss_pred EEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCc--ccCCCHHHHHHHHH
Q 037735 191 LVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEK--MYNPTPKELEGIIQ 245 (329)
Q Consensus 191 ~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~--~y~ps~eE~~~~i~ 245 (329)
+....+ ... -+.+.++.+.|.+.|. .-.. .+.||-.+|.=.+.
T Consensus 413 ~~~~~~-~~~----------~~~~~~i~~~l~~~gf-~v~~~~~~vps~g~w~f~~a 457 (521)
T PRK03612 413 VQSTSP-YFA----------PKAFWSIEATLEAAGL-ATTPYHVNVPSFGEWGFVLA 457 (521)
T ss_pred EecCCc-ccc----------hHHHHHHHHHHHHcCC-EEEEEEeCCCCcchhHHHee
Confidence 876322 111 1344555666666665 1111 56677777666555
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00043 Score=70.96 Aligned_cols=120 Identities=15% Similarity=0.159 Sum_probs=70.5
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC----Ccceeeecccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ----SRSYYAAGVPGSFYS 118 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~----~~~~f~~gvpgsFy~ 118 (329)
..+|+|+|||||..++.+.. . .|..+++..|+........-++... .+--++. +++++
T Consensus 139 ~~~VLDlG~GsG~iai~la~--------~-------~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~---~D~~~ 200 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLC--------E-------LPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIH---SNWFE 200 (506)
T ss_pred CCEEEEccCchhHHHHHHHH--------H-------CCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeee---cchhh
Confidence 46899999999999998865 2 2446899999976555544333211 1112333 45654
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHH------HHHH-HHHhhcHHHHHHHHHHHhccCceEEE
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVM------EAYA-AQFNNDFQTFLNTRAQELVPGGLAAL 191 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~------~ay~-~q~~~D~~~FL~~ra~eL~pGG~l~~ 191 (329)
. ++.+++|+++|+--....+..+.. .+++. +.+. +..-..+..+++.-.+-|+|||.+++
T Consensus 201 ~-~~~~~fDlIvsNPPYi~~~~~~~l------------~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l 267 (506)
T PRK01544 201 N-IEKQKFDFIVSNPPYISHSEKSEM------------AIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL 267 (506)
T ss_pred h-CcCCCccEEEECCCCCCchhhhhc------------CchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE
Confidence 3 466789999997543332222111 00010 0000 00112345788888999999999988
Q ss_pred Ee
Q 037735 192 VM 193 (329)
Q Consensus 192 ~~ 193 (329)
..
T Consensus 268 Ei 269 (506)
T PRK01544 268 EI 269 (506)
T ss_pred EE
Confidence 53
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00096 Score=62.62 Aligned_cols=125 Identities=13% Similarity=0.113 Sum_probs=71.8
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC--cc-eeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS--RS-YYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~--~~-~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|..|..+.+.+ .+.-.|+.+|........+-+++... .+ .+..+....+
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~--------------~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~-- 134 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALM--------------KNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVF-- 134 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHc--------------CCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHh--
Confidence 34689999999999999887522 11247999999887777665554221 12 2333321111
Q ss_pred ccCCCCceeEEEeccceecccCCCCC-C--CCcc-ceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKV-D--GVEG-SIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~-~--~n~g-~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
..+.+++|.|+. ++|+. . +.+. .+....++..+ .+..+.-..+|..-++-|+|||+|+.++.
T Consensus 135 -~~~~~~fD~Vl~--------D~Pcsg~G~~~~~p~~~~~~~~~~~-----~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 135 -GAAVPKFDAILL--------DAPCSGEGVIRKDPSRKKNWSEEDI-----QEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred -hhhccCCCEEEE--------cCCCCCCcccccChhhhhcCCHHHH-----HHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 123345888864 34444 0 1100 00000111111 12233345789999999999999999986
Q ss_pred cc
Q 037735 195 SV 196 (329)
Q Consensus 195 g~ 196 (329)
..
T Consensus 201 s~ 202 (264)
T TIGR00446 201 SL 202 (264)
T ss_pred CC
Confidence 54
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00043 Score=65.16 Aligned_cols=108 Identities=14% Similarity=0.103 Sum_probs=65.8
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC-------Ccceeeeccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ-------SRSYYAAGVP 113 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~-------~~~~f~~gvp 113 (329)
+++.+|+|+|||+|..+..+++ . .+..++...|+..+.....-+.++. .+--+..+.+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~--------~-------~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~ 135 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLK--------H-------KSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDG 135 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHh--------C-------CCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECch
Confidence 4566999999999998776653 1 1123688888876655444332221 1112333433
Q ss_pred cccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEE
Q 037735 114 GSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALV 192 (329)
Q Consensus 114 gsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~ 192 (329)
..|..+ .++++|+|++..+-.+- |.. ..|. ..|++..++-|+|||.+++.
T Consensus 136 ~~~l~~--~~~~yDvIi~D~~~~~~---~~~-----------------~l~~-------~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 136 FKFLAD--TENTFDVIIVDSTDPVG---PAE-----------------TLFT-------KEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred HHHHHh--CCCCccEEEEeCCCCCC---ccc-----------------chhH-------HHHHHHHHHHhCCCcEEEEc
Confidence 333333 25789999987654431 100 0111 37788999999999999987
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00026 Score=64.63 Aligned_cols=142 Identities=19% Similarity=0.321 Sum_probs=84.2
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHh-hhhcCCC----Ccceeeeccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNT-LFKSLPQ----SRSYYAAGVPGS 115 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~-lf~~l~~----~~~~f~~gvpgs 115 (329)
.+..+.+|.|||.|.-|..++... + -+|-+.|... .|-. +-+.+.. -..+|.+|.
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl~~-------f---------~~VDlVEp~~-~Fl~~a~~~l~~~~~~v~~~~~~gL--- 113 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLLPV-------F---------DEVDLVEPVE-KFLEQAKEYLGKDNPRVGEFYCVGL--- 113 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCCCC-----------------SEEEEEES-H-HHHHHHHHHTCCGGCCEEEEEES-G---
T ss_pred CCcceEEecccccchhHHHHHHHh-------c---------CEeEEeccCH-HHHHHHHHHhcccCCCcceEEecCH---
Confidence 457899999999999998776311 1 1444555433 3333 2223332 135666664
Q ss_pred cccccCCC-CceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 116 FYSSLFPK-SSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 116 Fy~~lfp~-~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
+..-|. +.+|+||.-+++..|++ .||-.||+++.+.|+|||++++==-
T Consensus 114 --Q~f~P~~~~YDlIW~QW~lghLTD-----------------------------~dlv~fL~RCk~~L~~~G~IvvKEN 162 (218)
T PF05891_consen 114 --QDFTPEEGKYDLIWIQWCLGHLTD-----------------------------EDLVAFLKRCKQALKPNGVIVVKEN 162 (218)
T ss_dssp --GG----TT-EEEEEEES-GGGS-H-----------------------------HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred --hhccCCCCcEeEEEehHhhccCCH-----------------------------HHHHHHHHHHHHhCcCCcEEEEEec
Confidence 444464 79999999888888764 4899999999999999998887321
Q ss_pred ccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCc-ccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 195 SVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEK-MYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 195 g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~-~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
...++. -.++++. --.||.+.++.+++++| +++++-+..
T Consensus 163 ~~~~~~------------------------~~~D~~DsSvTRs~~~~~~lF~~AG-l~~v~~~~Q 202 (218)
T PF05891_consen 163 VSSSGF------------------------DEFDEEDSSVTRSDEHFRELFKQAG-LRLVKEEKQ 202 (218)
T ss_dssp EESSSE------------------------EEEETTTTEEEEEHHHHHHHHHHCT--EEEEEEE-
T ss_pred CCCCCC------------------------cccCCccCeeecCHHHHHHHHHHcC-CEEEEeccc
Confidence 111110 0123333 55699999999999994 998877653
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00072 Score=65.51 Aligned_cols=78 Identities=12% Similarity=0.121 Sum_probs=47.9
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CCCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~~~~~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|.+|..+.+.. .+.-+|+.-|.........-+.+ +.....++.| ++.+
T Consensus 80 ~g~~VLDIG~GtG~~a~~LA~~~--------------~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~g---D~~~ 142 (322)
T PRK13943 80 KGMRVLEIGGGTGYNAAVMSRVV--------------GEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCG---DGYY 142 (322)
T ss_pred CCCEEEEEeCCccHHHHHHHHhc--------------CCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeC---Chhh
Confidence 34689999999999999886521 11125888888765544333222 2212234444 5545
Q ss_pred ccCCCCceeEEEecccee
Q 037735 119 SLFPKSSLHFVHSSYTLH 136 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alh 136 (329)
.+.+.+++|+|++..+++
T Consensus 143 ~~~~~~~fD~Ii~~~g~~ 160 (322)
T PRK13943 143 GVPEFAPYDVIFVTVGVD 160 (322)
T ss_pred cccccCCccEEEECCchH
Confidence 444556799999876543
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0011 Score=64.61 Aligned_cols=109 Identities=17% Similarity=0.216 Sum_probs=64.9
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CC----------Cccee
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQ----------SRSYY 108 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~----------~~~~f 108 (329)
+..+|||||||-|.-..-... . .+ -.++..|+...-........ .. ...-|
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~------------~---~i-~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f 125 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQK------------A---KI-KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEF 125 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHH------------T---T--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEE
T ss_pred CCCeEEEecCCCchhHHHHHh------------c---CC-CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhhe
Confidence 678999999999986544432 1 22 36777888754444433222 10 11223
Q ss_pred eeccccccc---cccCCCC--ceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHh
Q 037735 109 AAGVPGSFY---SSLFPKS--SLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQEL 183 (329)
Q Consensus 109 ~~gvpgsFy---~~lfp~~--s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL 183 (329)
+.+. .|- ...+++. .+|+|-+-+|||..=.- +.-.+.||+..++-|
T Consensus 126 ~~~D--~f~~~l~~~~~~~~~~FDvVScQFalHY~Fes---------------------------e~~ar~~l~Nvs~~L 176 (331)
T PF03291_consen 126 IAAD--CFSESLREKLPPRSRKFDVVSCQFALHYAFES---------------------------EEKARQFLKNVSSLL 176 (331)
T ss_dssp EEST--TCCSHHHCTSSSTTS-EEEEEEES-GGGGGSS---------------------------HHHHHHHHHHHHHTE
T ss_pred eccc--cccchhhhhccccCCCcceeehHHHHHHhcCC---------------------------HHHHHHHHHHHHHhc
Confidence 4332 222 2235554 99999999999985321 122358999999999
Q ss_pred ccCceEEEEecc
Q 037735 184 VPGGLAALVMFS 195 (329)
Q Consensus 184 ~pGG~l~~~~~g 195 (329)
+|||.++.+++.
T Consensus 177 k~GG~FIgT~~d 188 (331)
T PF03291_consen 177 KPGGYFIGTTPD 188 (331)
T ss_dssp EEEEEEEEEEE-
T ss_pred CCCCEEEEEecC
Confidence 999999999974
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0017 Score=62.18 Aligned_cols=99 Identities=17% Similarity=0.199 Sum_probs=61.7
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC--CCCc-ceeeeccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL--PQSR-SYYAAGVPGSFY 117 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l--~~~~-~~f~~gvpgsFy 117 (329)
.+..+++|+|||||-+++.... . -. ..++..|+=.---...+.+. ..-. ..++ ..|+
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~k---------L------GA-~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~----~~~~ 220 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAK---------L------GA-KKVVGVDIDPQAVEAARENARLNGVELLVQA----KGFL 220 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHH---------c------CC-ceEEEecCCHHHHHHHHHHHHHcCCchhhhc----cccc
Confidence 4678999999999999998863 1 11 36888887532222222221 1100 0111 1254
Q ss_pred cccCCCC-ceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 118 SSLFPKS-SLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 118 ~~lfp~~-s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
..-.|.+ .+|+|+.|- |-++ +..+...-.+.|+|||++++|-
T Consensus 221 ~~~~~~~~~~DvIVANI----LA~v------------------------------l~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 221 LLEVPENGPFDVIVANI----LAEV------------------------------LVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred chhhcccCcccEEEehh----hHHH------------------------------HHHHHHHHHHHcCCCceEEEEe
Confidence 5556664 899999876 2221 1255677788999999999987
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00058 Score=59.51 Aligned_cols=75 Identities=12% Similarity=0.017 Sum_probs=51.1
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcce-eeeccccccccccC
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSY-YAAGVPGSFYSSLF 121 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~-f~~gvpgsFy~~lf 121 (329)
..+|+|+|||+|..|..+++ + ..+++.-|+.......+-+.+....++ ++ -+++.+-.+
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~--------~---------~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii---~~D~~~~~~ 73 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLE--------R---------AARVTAIEIDPRLAPRLREKFAAADNLTVI---HGDALKFDL 73 (169)
T ss_pred cCEEEEECCCccHHHHHHHh--------c---------CCeEEEEECCHHHHHHHHHHhccCCCEEEE---ECchhcCCc
Confidence 45899999999999999975 1 136888898766655554444321122 33 357766667
Q ss_pred CCCceeEEEeccceec
Q 037735 122 PKSSLHFVHSSYTLHW 137 (329)
Q Consensus 122 p~~s~dl~~Ss~alhW 137 (329)
++.++|.++|+.-.|+
T Consensus 74 ~~~~~d~vi~n~Py~~ 89 (169)
T smart00650 74 PKLQPYKVVGNLPYNI 89 (169)
T ss_pred cccCCCEEEECCCccc
Confidence 7777899988765554
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0021 Score=61.41 Aligned_cols=105 Identities=19% Similarity=0.298 Sum_probs=65.8
Q ss_pred eEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC--CCCcc--eeeeccccccccc
Q 037735 44 FRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL--PQSRS--YYAAGVPGSFYSS 119 (329)
Q Consensus 44 ~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l--~~~~~--~f~~gvpgsFy~~ 119 (329)
.+|||+|||-|..+..+.+ . .|..++.+.|.-..-....-+++ ..... +|.+ +-|+.
T Consensus 160 ~~vlDlGCG~Gvlg~~la~--------~-------~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s----~~~~~ 220 (300)
T COG2813 160 GKVLDLGCGYGVLGLVLAK--------K-------SPQAKLTLVDVNARAVESARKNLAANGVENTEVWAS----NLYEP 220 (300)
T ss_pred CcEEEeCCCccHHHHHHHH--------h-------CCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEe----ccccc
Confidence 3899999999999999975 2 56789999997422211112222 11122 2322 45566
Q ss_pred cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
+.. ++|+|+|+==+|= .. .....+. .+++..-++.|++||.|.+..-|
T Consensus 221 v~~--kfd~IisNPPfh~--G~-------------~v~~~~~-----------~~~i~~A~~~L~~gGeL~iVan~ 268 (300)
T COG2813 221 VEG--KFDLIISNPPFHA--GK-------------AVVHSLA-----------QEIIAAAARHLKPGGELWIVANR 268 (300)
T ss_pred ccc--cccEEEeCCCccC--Cc-------------chhHHHH-----------HHHHHHHHHhhccCCEEEEEEcC
Confidence 655 8999998733330 00 0111111 27789999999999999998863
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00063 Score=61.95 Aligned_cols=99 Identities=11% Similarity=0.096 Sum_probs=56.0
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~f~~gvpgsFy~ 118 (329)
+-.+|||+|||||.+|..+..-+ .+...|+..|.-..-....-+.|. ..+..+..|. -+.
T Consensus 72 pg~~VLeIGtGsGY~aAlla~lv--------------g~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gd---g~~ 134 (209)
T PF01135_consen 72 PGDRVLEIGTGSGYQAALLAHLV--------------GPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGD---GSE 134 (209)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--------------STTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES----GGG
T ss_pred CCCEEEEecCCCcHHHHHHHHhc--------------CccceEEEECccHHHHHHHHHHHHHhccCceeEEEcc---hhh
Confidence 34799999999999999886422 222356666654322222222222 1123455554 333
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
-+-+...+|.|++..+. .++| ..--+-|++||+|++-+-
T Consensus 135 g~~~~apfD~I~v~~a~---~~ip----------------------------------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 135 GWPEEAPFDRIIVTAAV---PEIP----------------------------------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp TTGGG-SEEEEEESSBB---SS------------------------------------HHHHHTEEEEEEEEEEES
T ss_pred ccccCCCcCEEEEeecc---chHH----------------------------------HHHHHhcCCCcEEEEEEc
Confidence 33345679999999887 3566 122345999999998775
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0015 Score=60.31 Aligned_cols=112 Identities=16% Similarity=0.209 Sum_probs=77.1
Q ss_pred eEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--Ccce-eeecccccccccc
Q 037735 44 FRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--SRSY-YAAGVPGSFYSSL 120 (329)
Q Consensus 44 ~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--~~~~-f~~gvpgsFy~~l 120 (329)
-.++|||||.|.....+.. + .|+.-++.-+...+-...+.+.+.. -.++ .+++..-.+.+.+
T Consensus 50 pi~lEIGfG~G~~l~~~A~--------~-------nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~ 114 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAK--------K-------NPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYL 114 (227)
T ss_pred cEEEEECCCCCHHHHHHHH--------H-------CCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhc
Confidence 4679999999998887764 2 6777788888776655555444321 1133 4455544566777
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
+|++|+|=++=++.==|-- .--+|.+|-. ..||+.-++.|+|||.+.+.|
T Consensus 115 ~~~~sl~~I~i~FPDPWpK----kRH~KRRl~~-------------------~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 115 IPDGSLDKIYINFPDPWPK----KRHHKRRLTQ-------------------PEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCeeEEEEECCCCCCC----ccccccccCC-------------------HHHHHHHHHHccCCCEEEEEe
Confidence 8888999999887666622 2123334322 288999999999999999987
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0014 Score=59.50 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=18.8
Q ss_pred CCceEEEeeeCCCCcccHHHHH
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQ 62 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~ 62 (329)
.+..+|||+|||||.+|..+.+
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~ 92 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLAR 92 (209)
T ss_pred CCCCeEEEECCCchHHHHHHHH
Confidence 4568999999999999988754
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.012 Score=54.28 Aligned_cols=137 Identities=10% Similarity=0.054 Sum_probs=88.9
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---------------Ccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---------------SRS 106 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---------------~~~ 106 (329)
+..+|++.|||.|.+...|.+ + ..+|+..|+...-....|+..+. ..-
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~--------~---------G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i 105 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLS--------K---------GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDI 105 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHh--------C---------CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCce
Confidence 347999999999999999975 1 26899999997666666663211 011
Q ss_pred eeeeccccccccccCC---CCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHh
Q 037735 107 YYAAGVPGSFYSSLFP---KSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQEL 183 (329)
Q Consensus 107 ~f~~gvpgsFy~~lfp---~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL 183 (329)
-+.+ |+|++--.+ -+.+|+|+=..+|+=| | |+... ++.+..++-|
T Consensus 106 ~~~~---gD~f~l~~~~~~~~~fD~VyDra~~~Al---p---------------p~~R~-----------~Y~~~l~~lL 153 (226)
T PRK13256 106 EIYV---ADIFNLPKIANNLPVFDIWYDRGAYIAL---P---------------NDLRT-----------NYAKMMLEVC 153 (226)
T ss_pred EEEE---ccCcCCCccccccCCcCeeeeehhHhcC---C---------------HHHHH-----------HHHHHHHHHh
Confidence 2333 357653211 2467887777777654 2 33444 4467788899
Q ss_pred ccCceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 184 VPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 184 ~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
+|||.+++.++-.+.. + .++ -+.-+.+|+++.+... |+|+.++.
T Consensus 154 ~pgg~llll~~~~~~~-~-----~GP----------------------Pf~v~~~e~~~lf~~~--~~i~~l~~ 197 (226)
T PRK13256 154 SNNTQILLLVMEHDKK-S-----QTP----------------------PYSVTQAELIKNFSAK--IKFELIDS 197 (226)
T ss_pred CCCcEEEEEEEecCCC-C-----CCC----------------------CCcCCHHHHHHhccCC--ceEEEeee
Confidence 9999999999843211 0 011 2334688999988755 88877764
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0025 Score=65.41 Aligned_cols=138 Identities=10% Similarity=0.004 Sum_probs=88.8
Q ss_pred HHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchH
Q 037735 15 AYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDF 94 (329)
Q Consensus 15 ~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndf 94 (329)
..|++..+...|.+.-....+ +..+.-.++|+|||.|..+..+.. . .|+..++.-|...+-.
T Consensus 323 ~~q~~~~e~~~p~~~i~~ekl---f~~~~p~~lEIG~G~G~~~~~~A~--------~-------~p~~~~iGiE~~~~~~ 384 (506)
T PRK01544 323 GVQQNLLDNELPKYLFSKEKL---VNEKRKVFLEIGFGMGEHFINQAK--------M-------NPDALFIGVEVYLNGV 384 (506)
T ss_pred HHHHHHHHhhhhhhCCCHHHh---CCCCCceEEEECCCchHHHHHHHH--------h-------CCCCCEEEEEeeHHHH
Confidence 377887777777665222222 233456789999999999888864 2 5777888888876655
Q ss_pred HhhhhcCC--CCcceeeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcH
Q 037735 95 NTLFKSLP--QSRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDF 172 (329)
Q Consensus 95 n~lf~~l~--~~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~ 172 (329)
..+.+... ...++.+......+....||++|+|-++-++-==|-.+-. .|.++..
T Consensus 385 ~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh----~krRl~~------------------- 441 (506)
T PRK01544 385 ANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQ----KKKRIFN------------------- 441 (506)
T ss_pred HHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCC----ccccccC-------------------
Confidence 55444321 1123333211123346678999999999888777732211 2222211
Q ss_pred HHHHHHHHHHhccCceEEEEe
Q 037735 173 QTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 173 ~~FL~~ra~eL~pGG~l~~~~ 193 (329)
..||+.-++-|+|||.+.+.|
T Consensus 442 ~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 442 KERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred HHHHHHHHHhcCCCCEEEEEc
Confidence 278999999999999999877
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0025 Score=61.45 Aligned_cols=110 Identities=17% Similarity=0.196 Sum_probs=67.7
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC-------CCcceeeeccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP-------QSRSYYAAGVP 113 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~-------~~~~~f~~gvp 113 (329)
+++.+||++|||+|.....+++ . ++..+|...|+....-...-+.++ +.+--++.+.+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk--------~-------~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da 154 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIAR--------H-------SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDG 154 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHh--------C-------CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChH
Confidence 5678999999999997766653 1 122478888877543333222222 22334566654
Q ss_pred cccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 114 GSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 114 gsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
..|.+. .|++++|+|++-.+-+|- |. ...|. ..|++..++-|+|||+|+...
T Consensus 155 ~~~l~~-~~~~~yDvIi~D~~dp~~---~~-----------------~~L~t-------~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 155 VEFLKN-APEGTYDAIIVDSSDPVG---PA-----------------QELFE-------KPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred HHHHhh-ccCCCCCEEEEcCCCCCC---ch-----------------hhhhH-------HHHHHHHHHhcCCCcEEEECc
Confidence 455443 356789999986544441 10 11222 278999999999999987653
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0024 Score=62.78 Aligned_cols=110 Identities=16% Similarity=0.138 Sum_probs=65.7
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhh--cCC--------CCcceeee
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFK--SLP--------QSRSYYAA 110 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~--~l~--------~~~~~f~~ 110 (329)
+++.+||++|||+|.....+++ . .+..+|...|+-.......-+ .++ ..+--+..
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk--------~-------~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi 213 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLK--------Y-------ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHV 213 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHh--------c-------CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEE
Confidence 5678999999999986555542 1 223488999998765443222 111 11222445
Q ss_pred ccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEE
Q 037735 111 GVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAA 190 (329)
Q Consensus 111 gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~ 190 (329)
+.+..|... .++++|+|++... + |.. +.....|. ..|++...+-|+|||+|+
T Consensus 214 ~Da~~fL~~--~~~~YDVIIvDl~-----D-P~~-------------~~~~~LyT-------~EFy~~~~~~LkPgGV~V 265 (374)
T PRK01581 214 CDAKEFLSS--PSSLYDVIIIDFP-----D-PAT-------------ELLSTLYT-------SELFARIATFLTEDGAFV 265 (374)
T ss_pred CcHHHHHHh--cCCCccEEEEcCC-----C-ccc-------------cchhhhhH-------HHHHHHHHHhcCCCcEEE
Confidence 544444332 3567999998732 1 100 00122333 268999999999999998
Q ss_pred EEe
Q 037735 191 LVM 193 (329)
Q Consensus 191 ~~~ 193 (329)
+..
T Consensus 266 ~Qs 268 (374)
T PRK01581 266 CQS 268 (374)
T ss_pred Eec
Confidence 873
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0017 Score=61.61 Aligned_cols=112 Identities=18% Similarity=0.265 Sum_probs=66.1
Q ss_pred EEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---CcceeeeccccccccccC
Q 037735 45 RIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---SRSYYAAGVPGSFYSSLF 121 (329)
Q Consensus 45 ~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~~~~f~~gvpgsFy~~lf 121 (329)
+|+|+|||||..++.+.. . .|...|+..|+...-....-++... .+.+++.+ +.++.+-
T Consensus 113 ~ilDlGTGSG~iai~la~--------~-------~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~---dlf~~~~ 174 (280)
T COG2890 113 RILDLGTGSGAIAIALAK--------E-------GPDAEVIAVDISPDALALARENAERNGLVRVLVVQS---DLFEPLR 174 (280)
T ss_pred cEEEecCChHHHHHHHHh--------h-------CcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEee---ecccccC
Confidence 899999999999999975 2 3446899999976433333222211 11122322 5555554
Q ss_pred CCCceeEEEeccceecccCCCCCCCCccceeecC----CcHHHH------HHHHHH-HhhcHHHHHHHHHHHhccCceEE
Q 037735 122 PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRR----FVNEVM------EAYAAQ-FNNDFQTFLNTRAQELVPGGLAA 190 (329)
Q Consensus 122 p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~----~~~~~~------~ay~~q-~~~D~~~FL~~ra~eL~pGG~l~ 190 (329)
. .+|+++|| +| |+.. ..|++. ..+..- --...++|+..-.+-|+|||.++
T Consensus 175 ~--~fDlIVsN--------PP---------Yip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~ 235 (280)
T COG2890 175 G--KFDLIVSN--------PP---------YIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLI 235 (280)
T ss_pred C--ceeEEEeC--------CC---------CCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEE
Confidence 4 79999987 33 1111 111110 011110 11245688999999999999988
Q ss_pred EEe
Q 037735 191 LVM 193 (329)
Q Consensus 191 ~~~ 193 (329)
+-.
T Consensus 236 le~ 238 (280)
T COG2890 236 LEI 238 (280)
T ss_pred EEE
Confidence 765
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.021 Score=55.47 Aligned_cols=189 Identities=16% Similarity=0.167 Sum_probs=110.1
Q ss_pred CCCCCCcchHHHhHHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCcc
Q 037735 2 VGGDGAHSYASNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIE 81 (329)
Q Consensus 2 ~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe 81 (329)
-||-+..+|.-+-.+|+.....-.-..++.. +.+..+ ...-..+|.|-|.|..+..+++ + .|.
T Consensus 139 l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il-~~~~Gf-~~v~~avDvGgGiG~v~k~ll~--------~-------fp~ 201 (342)
T KOG3178|consen 139 LGGYGGADERFSKDFNGSMSFLSTLVMKKIL-EVYTGF-KGVNVAVDVGGGIGRVLKNLLS--------K-------YPH 201 (342)
T ss_pred hhhhcccccccHHHHHHHHHHHHHHHHHhhh-hhhccc-ccCceEEEcCCcHhHHHHHHHH--------h-------CCC
Confidence 3455566665555555554332222222211 111111 2356789999999999999886 3 566
Q ss_pred ceEEecCCCcchHHhhhhcC-CCCcceeeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHH
Q 037735 82 FQVFFNDHSDNDFNTLFKSL-PQSRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEV 160 (329)
Q Consensus 82 ~~v~~nDLp~ndfn~lf~~l-~~~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~ 160 (329)
+..+-=|+|.=.-. ...+ |+ +.=+.|+++.. .|++- ++|--+.||=+.+
T Consensus 202 ik~infdlp~v~~~--a~~~~~g-----V~~v~gdmfq~-~P~~d--aI~mkWiLhdwtD-------------------- 251 (342)
T KOG3178|consen 202 IKGINFDLPFVLAA--APYLAPG-----VEHVAGDMFQD-TPKGD--AIWMKWILHDWTD-------------------- 251 (342)
T ss_pred CceeecCHHHHHhh--hhhhcCC-----cceeccccccc-CCCcC--eEEEEeecccCCh--------------------
Confidence 78887788742211 1112 21 23355678888 88664 8887777763222
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCCcccC--CcccchHHHHHHHHHHHHhcCCcCCCcccCCCHH
Q 037735 161 MEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVN--NAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPK 238 (329)
Q Consensus 161 ~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~--~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~e 238 (329)
+|+.+||+.+++-|.|||.+++.=.-.+++...+. .......+.+..+.. .-|+ -++.+
T Consensus 252 ---------edcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~---~~Gk-------ert~~ 312 (342)
T KOG3178|consen 252 ---------EDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQT---SGGK-------ERTLK 312 (342)
T ss_pred ---------HHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHh---ccce-------eccHH
Confidence 47889999999999999999987653332111111 112222333332222 2253 38999
Q ss_pred HHHHHHHhCCceEEeEEEE
Q 037735 239 ELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 239 E~~~~i~~~g~f~i~~~e~ 257 (329)
|++..+..+ +|....+-.
T Consensus 313 e~q~l~~~~-gF~~~~~~~ 330 (342)
T KOG3178|consen 313 EFQALLPEE-GFPVCMVAL 330 (342)
T ss_pred HHHhcchhh-cCceeEEEe
Confidence 999998888 487765543
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0029 Score=58.40 Aligned_cols=105 Identities=14% Similarity=0.181 Sum_probs=61.7
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CC-Ccceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQ-SRSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~-~~~~f~~gvpgsF 116 (329)
.++.+|+|+|||+|.-++.+...+ .+..+++..|.........-+.+ +- .+.-+..|.....
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~--------------~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~ 132 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALAL--------------PEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA 132 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhC--------------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH
Confidence 357899999999999888876522 23468999998754333322222 11 1122344433333
Q ss_pred ccccC---CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 117 YSSLF---PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 117 y~~lf---p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
..++. ++.++|+++-- .++ .....++....+-|+|||++++-.
T Consensus 133 L~~l~~~~~~~~fD~VfiD--------a~k--------------------------~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 133 LDQLLNNDPKPEFDFAFVD--------ADK--------------------------PNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred HHHHHhCCCCCCCCEEEEC--------CCH--------------------------HHHHHHHHHHHHhcCCCeEEEEEc
Confidence 33332 24578888652 110 112245777788999999988754
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0027 Score=58.92 Aligned_cols=72 Identities=10% Similarity=0.115 Sum_probs=49.3
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccCC
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLFP 122 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lfp 122 (329)
..+|+|+|||+|..++.+...+ .. .+..+|+.-|+-.+.....-++++. ..+.. ++|.... +
T Consensus 50 ~grVLDlG~GSG~Lalala~~~--------~~----~~~~~V~aVEID~~Al~~Ar~n~~~--~~~~~---~D~~~~~-~ 111 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMM--------MY----AKPREIVCVELNHTYYKLGKRIVPE--ATWIN---ADALTTE-F 111 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhc--------cc----CCCcEEEEEECCHHHHHHHHhhccC--CEEEE---cchhccc-c
Confidence 4699999999999988876522 11 1236899999988777766665543 23444 3564333 3
Q ss_pred CCceeEEEec
Q 037735 123 KSSLHFVHSS 132 (329)
Q Consensus 123 ~~s~dl~~Ss 132 (329)
++++|+|+|+
T Consensus 112 ~~~FDlIIsN 121 (241)
T PHA03412 112 DTLFDMAISN 121 (241)
T ss_pred cCCccEEEEC
Confidence 5789999987
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0044 Score=55.36 Aligned_cols=104 Identities=16% Similarity=0.153 Sum_probs=64.2
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC--cceeeecccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS--RSYYAAGVPGSFYS 118 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~--~~~f~~gvpgsFy~ 118 (329)
.+-.+++|+|||||.-|..++. + .|.-++|.-|--..-...+-++...+ .++-+ +.|+.++
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~-~--------------~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~v--v~g~Ap~ 95 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWAL-A--------------GPSGRVIAIERDEEALELIERNAARFGVDNLEV--VEGDAPE 95 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHH-h--------------CCCceEEEEecCHHHHHHHHHHHHHhCCCcEEE--EeccchH
Confidence 3456999999999999999872 1 35568888887655555554443221 12222 2344543
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
-|- ++|.. ..|++.++. .+...|+...+-|+|||+|+.+..-.
T Consensus 96 ~L~------------------~~~~~----daiFIGGg~-------------~i~~ile~~~~~l~~ggrlV~naitl 138 (187)
T COG2242 96 ALP------------------DLPSP----DAIFIGGGG-------------NIEEILEAAWERLKPGGRLVANAITL 138 (187)
T ss_pred hhc------------------CCCCC----CEEEECCCC-------------CHHHHHHHHHHHcCcCCeEEEEeecH
Confidence 332 23311 235554431 33467899999999999999988543
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0054 Score=58.74 Aligned_cols=95 Identities=16% Similarity=0.201 Sum_probs=57.2
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhh-----hhcCCCCcceeeeccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTL-----FKSLPQSRSYYAAGVPGSFY 117 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~l-----f~~l~~~~~~f~~gvpgsFy 117 (329)
..+|+|+|||||-+++.... . -. -+|+..|.-..-.... .+.+.. .+.+. .+.+
T Consensus 162 g~~vLDvG~GSGILaiaA~k---------l------GA-~~v~a~DiDp~Av~~a~~N~~~N~~~~--~~~v~-~~~~-- 220 (295)
T PF06325_consen 162 GKRVLDVGCGSGILAIAAAK---------L------GA-KKVVAIDIDPLAVEAARENAELNGVED--RIEVS-LSED-- 220 (295)
T ss_dssp TSEEEEES-TTSHHHHHHHH---------T------TB-SEEEEEESSCHHHHHHHHHHHHTT-TT--CEEES-CTSC--
T ss_pred CCEEEEeCCcHHHHHHHHHH---------c------CC-CeEEEecCCHHHHHHHHHHHHHcCCCe--eEEEE-Eecc--
Confidence 46999999999999988863 1 12 3688888764322222 222222 22222 1112
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
.+...+|+|+++--.+= +........+-|+|||.|++|-+=
T Consensus 221 ---~~~~~~dlvvANI~~~v----------------------------------L~~l~~~~~~~l~~~G~lIlSGIl 261 (295)
T PF06325_consen 221 ---LVEGKFDLVVANILADV----------------------------------LLELAPDIASLLKPGGYLILSGIL 261 (295)
T ss_dssp ---TCCS-EEEEEEES-HHH----------------------------------HHHHHHHCHHHEEEEEEEEEEEEE
T ss_pred ---cccccCCEEEECCCHHH----------------------------------HHHHHHHHHHhhCCCCEEEEcccc
Confidence 34588999998754332 224566678889999999998754
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.02 Score=54.63 Aligned_cols=169 Identities=19% Similarity=0.223 Sum_probs=92.9
Q ss_pred HhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHh---hhh
Q 037735 23 ILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNT---LFK 99 (329)
Q Consensus 23 ~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~---lf~ 99 (329)
++..+|+++|..+.. ...+++|+|+=||+|.- +++++... + ..| .++.++|...-.... +.+
T Consensus 118 ~l~~~i~~ai~~L~~--~g~pvrIlDIAaG~GRY-------vlDal~~~-~----~~~-~~i~LrDys~~Nv~~g~~li~ 182 (311)
T PF12147_consen 118 HLEELIRQAIARLRE--QGRPVRILDIAAGHGRY-------VLDALEKH-P----ERP-DSILLRDYSPINVEKGRALIA 182 (311)
T ss_pred HHHHHHHHHHHHHHh--cCCceEEEEeccCCcHH-------HHHHHHhC-C----CCC-ceEEEEeCCHHHHHHHHHHHH
Confidence 355666777665532 46799999999999986 33444332 1 123 489999986432222 222
Q ss_pred c--CCCCcceeeecccccc--ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhc-HHH
Q 037735 100 S--LPQSRSYYAAGVPGSF--YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNND-FQT 174 (329)
Q Consensus 100 ~--l~~~~~~f~~gvpgsF--y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D-~~~ 174 (329)
. |.. -.-|..|...+. |..+-| ..|+++.|=-.--+++- | ..+
T Consensus 183 ~~gL~~-i~~f~~~dAfd~~~l~~l~p--~P~l~iVsGL~ElF~Dn-----------------------------~lv~~ 230 (311)
T PF12147_consen 183 ERGLED-IARFEQGDAFDRDSLAALDP--APTLAIVSGLYELFPDN-----------------------------DLVRR 230 (311)
T ss_pred HcCCcc-ceEEEecCCCCHhHhhccCC--CCCEEEEecchhhCCcH-----------------------------HHHHH
Confidence 2 111 113555543333 233334 34555555444443321 2 224
Q ss_pred HHHHHHHHhccCceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHh-cCCcCCCcccCCCHHHHHHHHHhCCceEEe
Q 037735 175 FLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTK-MGILSKEKMYNPTPKELEGIIQRNGNFTIE 253 (329)
Q Consensus 175 FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~-eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~ 253 (329)
-|+--+..|.|||.|+.+. .+-. | -.+.+..+|..--. +..+ |..+|..|+.++++.+| |+=.
T Consensus 231 sl~gl~~al~pgG~lIyTg--QPwH-P--------Qle~IAr~LtsHr~g~~Wv----MRrRsq~EmD~Lv~~aG-F~K~ 294 (311)
T PF12147_consen 231 SLAGLARALEPGGYLIYTG--QPWH-P--------QLEMIARVLTSHRDGKAWV----MRRRSQAEMDQLVEAAG-FEKI 294 (311)
T ss_pred HHHHHHHHhCCCcEEEEcC--CCCC-c--------chHHHHHHHhcccCCCceE----EEecCHHHHHHHHHHcC-Cchh
Confidence 4888899999999998765 2211 1 01233333332110 1111 77799999999999995 7643
Q ss_pred E
Q 037735 254 R 254 (329)
Q Consensus 254 ~ 254 (329)
+
T Consensus 295 ~ 295 (311)
T PF12147_consen 295 D 295 (311)
T ss_pred h
Confidence 3
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.002 Score=60.86 Aligned_cols=133 Identities=17% Similarity=0.089 Sum_probs=80.9
Q ss_pred hHHHhHHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCC
Q 037735 10 YASNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDH 89 (329)
Q Consensus 10 Y~~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDL 89 (329)
|++.|..=........|+..+.+... +.-..++|.|||-|.-+-. .|...++-.|+
T Consensus 18 Yd~ia~~fs~tr~~~Wp~v~qfl~~~-----~~gsv~~d~gCGngky~~~-------------------~p~~~~ig~D~ 73 (293)
T KOG1331|consen 18 YDKIATHFSATRAAPWPMVRQFLDSQ-----PTGSVGLDVGCGNGKYLGV-------------------NPLCLIIGCDL 73 (293)
T ss_pred HHHhhhhccccccCccHHHHHHHhcc-----CCcceeeecccCCcccCcC-------------------CCcceeeecch
Confidence 44444432222233344555544432 3357889999999874321 24456777777
Q ss_pred CcchHHhhhhcCCCCcceeeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHh
Q 037735 90 SDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFN 169 (329)
Q Consensus 90 p~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~ 169 (329)
..--... -+..... .... ++....++++.|+|...|.+.+||||.--.
T Consensus 74 c~~l~~~-ak~~~~~-~~~~----ad~l~~p~~~~s~d~~lsiavihhlsT~~R-------------------------- 121 (293)
T KOG1331|consen 74 CTGLLGG-AKRSGGD-NVCR----ADALKLPFREESFDAALSIAVIHHLSTRER-------------------------- 121 (293)
T ss_pred hhhhccc-cccCCCc-eeeh----hhhhcCCCCCCccccchhhhhhhhhhhHHH--------------------------
Confidence 6422111 1111110 1211 145577899999999999999999985321
Q ss_pred hcHHHHHHHHHHHhccCceEEEEecccCCCC
Q 037735 170 NDFQTFLNTRAQELVPGGLAALVMFSVPDGI 200 (329)
Q Consensus 170 ~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~ 200 (329)
=.+.++...++|+|||.+++..-+.....
T Consensus 122 --R~~~l~e~~r~lrpgg~~lvyvwa~~q~~ 150 (293)
T KOG1331|consen 122 --RERALEELLRVLRPGGNALVYVWALEQHQ 150 (293)
T ss_pred --HHHHHHHHHHHhcCCCceEEEEehhhccC
Confidence 12558999999999999999988865543
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.03 Score=51.28 Aligned_cols=139 Identities=23% Similarity=0.340 Sum_probs=85.7
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC------Cc---------
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ------SR--------- 105 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~------~~--------- 105 (329)
....+|+.-|||.|.....|.+ + ..+|+..|+...--...|+.-.. ..
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~--------~---------G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~ 98 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAE--------Q---------GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGR 98 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHH--------T---------TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSS
T ss_pred CCCCeEEEeCCCChHHHHHHHH--------C---------CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCc
Confidence 4457999999999999888874 1 26899999997665555543211 00
Q ss_pred ceeeeccccccccccCCC--CceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHh
Q 037735 106 SYYAAGVPGSFYSSLFPK--SSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQEL 183 (329)
Q Consensus 106 ~~f~~gvpgsFy~~lfp~--~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL 183 (329)
--+.+ |+||+ +-|. +++|+|+=-.+|+=| |. +..+ ++.+.-++-|
T Consensus 99 i~~~~---gDfF~-l~~~~~g~fD~iyDr~~l~Al---pp---------------~~R~-----------~Ya~~l~~ll 145 (218)
T PF05724_consen 99 ITIYC---GDFFE-LPPEDVGKFDLIYDRTFLCAL---PP---------------EMRE-----------RYAQQLASLL 145 (218)
T ss_dssp EEEEE---S-TTT-GGGSCHHSEEEEEECSSTTTS----G---------------GGHH-----------HHHHHHHHCE
T ss_pred eEEEE---ccccc-CChhhcCCceEEEEecccccC---CH---------------HHHH-----------HHHHHHHHHh
Confidence 11333 46876 2222 358999988888764 32 2333 4566788999
Q ss_pred ccCceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 184 VPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 184 ~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
+|||.+++.++-.+.... .++ -|.-+.+|+.+.+.. .|+|+.++..
T Consensus 146 ~p~g~~lLi~l~~~~~~~-----~GP----------------------Pf~v~~~ev~~l~~~--~f~i~~l~~~ 191 (218)
T PF05724_consen 146 KPGGRGLLITLEYPQGEM-----EGP----------------------PFSVTEEEVRELFGP--GFEIEELEEE 191 (218)
T ss_dssp EEEEEEEEEEEES-CSCS-----SSS----------------------S----HHHHHHHHTT--TEEEEEEEEE
T ss_pred CCCCcEEEEEEEcCCcCC-----CCc----------------------CCCCCHHHHHHHhcC--CcEEEEEecc
Confidence 999996555553222110 011 334578999999984 4999999974
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0068 Score=58.71 Aligned_cols=118 Identities=17% Similarity=0.236 Sum_probs=72.9
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC-C-Ccceeeecccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP-Q-SRSYYAAGVPGSFYS 118 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~-~-~~~~f~~gvpgsFy~ 118 (329)
+...+|+|+|||+|.=|..+++.+.. . ...+..+--|+.........+.|. . .+.+-+.|+-|+|..
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~----~-------~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALER----Q-------KKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDD 143 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHh----c-------CCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHH
Confidence 34568999999999999999876621 1 123689999999877777777776 2 223445566666743
Q ss_pred ccCCCCceeEEEeccceecccC--CCCCCCCccceee-----cCCcHHHHHHHHHHHhhcHHHHHHHHHH-HhccCceEE
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSK--VPKVDGVEGSIQT-----RRFVNEVMEAYAAQFNNDFQTFLNTRAQ-ELVPGGLAA 190 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~--~p~~~~n~g~i~~-----~~~~~~~~~ay~~q~~~D~~~FL~~ra~-eL~pGG~l~ 190 (329)
- ++||.+ .+.. +..+.. ...+|+.. ..||+.-++ .|.|||.|+
T Consensus 144 ~---------------l~~l~~~~~~~~---~r~~~flGSsiGNf~~~ea-----------~~fL~~~~~~~l~~~d~lL 194 (319)
T TIGR03439 144 G---------------LAWLKRPENRSR---PTTILWLGSSIGNFSRPEA-----------AAFLAGFLATALSPSDSFL 194 (319)
T ss_pred H---------------HhhcccccccCC---ccEEEEeCccccCCCHHHH-----------HHHHHHHHHhhCCCCCEEE
Confidence 2 333322 1100 001111 12233322 378888888 999999999
Q ss_pred EEecccCC
Q 037735 191 LVMFSVPD 198 (329)
Q Consensus 191 ~~~~g~~~ 198 (329)
+++=+..+
T Consensus 195 iG~D~~k~ 202 (319)
T TIGR03439 195 IGLDGCKD 202 (319)
T ss_pred EecCCCCC
Confidence 98855544
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0076 Score=66.69 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=70.8
Q ss_pred eEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC-------------------C
Q 037735 44 FRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ-------------------S 104 (329)
Q Consensus 44 ~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~-------------------~ 104 (329)
.+|+|+|||+|..++.+.. + .|..+|+..|+.........+++.. .
T Consensus 120 ~~VLDlG~GSG~Iai~La~--------~-------~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~ 184 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAE--------K-------WLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLD 184 (1082)
T ss_pred CEEEEEecchHHHHHHHHH--------H-------CCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccc
Confidence 5899999999999999875 2 2335899999987776665444311 0
Q ss_pred cceeeeccccccccccCCC--CceeEEEeccceecccCCCCCCCCccceeecC-----CcHHHHHH-----------HHH
Q 037735 105 RSYYAAGVPGSFYSSLFPK--SSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRR-----FVNEVMEA-----------YAA 166 (329)
Q Consensus 105 ~~~f~~gvpgsFy~~lfp~--~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~-----~~~~~~~a-----------y~~ 166 (329)
+--|+. ++.++.+ +. ..+|+|+|+ +| |+.. -+++|.+- |..
T Consensus 185 rV~f~~---sDl~~~~-~~~~~~fDlIVSN--------PP---------YI~~~e~~~l~~eV~~~ep~~~~~~~~p~~A 243 (1082)
T PLN02672 185 RVEFYE---SDLLGYC-RDNNIELDRIVGC--------IP---------QILNPNPEAMSKLVTENASEEFLYSLSNYCA 243 (1082)
T ss_pred cEEEEE---Cchhhhc-cccCCceEEEEEC--------CC---------cCCCcchhhcChhhhhccccccccccCcccc
Confidence 123443 3554443 32 269999985 34 2221 12223210 111
Q ss_pred HHh----h----cHHHHHHHHHHHhccCceEEEEecc
Q 037735 167 QFN----N----DFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 167 q~~----~----D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
.+. . ...+++..-.+.|+|||+|+|-+-.
T Consensus 244 L~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~ 280 (1082)
T PLN02672 244 LQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGG 280 (1082)
T ss_pred ccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc
Confidence 110 1 1367888888999999999988754
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0053 Score=61.89 Aligned_cols=105 Identities=10% Similarity=0.040 Sum_probs=62.5
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--C-Ccceeeeccccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--Q-SRSYYAAGVPGSFYSS 119 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~-~~~~f~~gvpgsFy~~ 119 (329)
..+|+|+|||+|..|+.+.... .+|+..|....+....-+++. . ..--|..|.--++...
T Consensus 298 ~~~VLDlgcGtG~~sl~la~~~-----------------~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~ 360 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLARQA-----------------AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTD 360 (443)
T ss_pred CCEEEEEeccCCHHHHHHHHhC-----------------CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhh
Confidence 4689999999999999886411 378999998777666544431 1 1223555432222111
Q ss_pred -cCCCCceeEEEec-------cceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHH
Q 037735 120 -LFPKSSLHFVHSS-------YTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFL 176 (329)
Q Consensus 120 -lfp~~s~dl~~Ss-------~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL 176 (329)
.++++++|++++. -.++|+.++. .+.|.+.+..|.. +++|+..+.
T Consensus 361 ~~~~~~~fD~Vi~dPPr~g~~~~~~~l~~~~-----~~~ivyvSCnp~t-------laRDl~~L~ 413 (443)
T PRK13168 361 QPWALGGFDKVLLDPPRAGAAEVMQALAKLG-----PKRIVYVSCNPAT-------LARDAGVLV 413 (443)
T ss_pred hhhhcCCCCEEEECcCCcChHHHHHHHHhcC-----CCeEEEEEeChHH-------hhccHHHHh
Confidence 2456789999864 3456666542 2344444445543 456777664
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0071 Score=57.73 Aligned_cols=116 Identities=15% Similarity=0.240 Sum_probs=67.9
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---------C--cceeee
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---------S--RSYYAA 110 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---------~--~~~f~~ 110 (329)
.++||...|||||-=.=.+.=-+. +..... ...++|+..|+..+.....-+...+ . ..||.-
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~----e~~~~~---~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~ 187 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLA----DTLGTA---PGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMR 187 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHH----Hhhccc---CCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHccc
Confidence 469999999999953322221111 111110 1148999999987666654333321 1 134532
Q ss_pred c---ccc------------ccc--cc---cC-CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHh
Q 037735 111 G---VPG------------SFY--SS---LF-PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFN 169 (329)
Q Consensus 111 g---vpg------------sFy--~~---lf-p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~ 169 (329)
. ..| .|- +- .+ |.+.+|+|+|-+.|..++..
T Consensus 188 ~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~---------------------------- 239 (287)
T PRK10611 188 GTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKT---------------------------- 239 (287)
T ss_pred ccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHH----------------------------
Confidence 1 011 111 11 12 25789999998888876532
Q ss_pred hcHHHHHHHHHHHhccCceEEEEe
Q 037735 170 NDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 170 ~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
+-.+.++.-++.|+|||+|+++-
T Consensus 240 -~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 240 -TQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred -HHHHHHHHHHHHhCCCcEEEEeC
Confidence 23477999999999999886643
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0044 Score=59.68 Aligned_cols=109 Identities=17% Similarity=0.262 Sum_probs=70.3
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCc---chHHhhhhcCCC------Ccceeeecc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSD---NDFNTLFKSLPQ------SRSYYAAGV 112 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~---ndfn~lf~~l~~------~~~~f~~gv 112 (329)
+--.++|||||-|.--+-.-. . .+ -+++..|.+. |+...-++.+.. +...|++|.
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~k------------A---gI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~D 180 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDK------------A---GI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAAD 180 (389)
T ss_pred cccccceeccCCcccHhHhhh------------h---cc-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEec
Confidence 345678999999986444432 1 12 2567777763 444443443321 235677775
Q ss_pred cccccccc---C--CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCc
Q 037735 113 PGSFYSSL---F--PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGG 187 (329)
Q Consensus 113 pgsFy~~l---f--p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG 187 (329)
+|+++| + ++-++|++=|=+|+|+.=... .-...+|+.-++.|+|||
T Consensus 181 --c~~~~l~d~~e~~dp~fDivScQF~~HYaFete---------------------------e~ar~~l~Nva~~LkpGG 231 (389)
T KOG1975|consen 181 --CFKERLMDLLEFKDPRFDIVSCQFAFHYAFETE---------------------------ESARIALRNVAKCLKPGG 231 (389)
T ss_pred --cchhHHHHhccCCCCCcceeeeeeeEeeeeccH---------------------------HHHHHHHHHHHhhcCCCc
Confidence 787665 3 455599999999999732110 112477999999999999
Q ss_pred eEEEEecc
Q 037735 188 LAALVMFS 195 (329)
Q Consensus 188 ~l~~~~~g 195 (329)
.++-+++-
T Consensus 232 ~FIgTiPd 239 (389)
T KOG1975|consen 232 VFIGTIPD 239 (389)
T ss_pred EEEEecCc
Confidence 99988854
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0059 Score=53.70 Aligned_cols=110 Identities=17% Similarity=0.134 Sum_probs=59.2
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC-----Ccceeee--ccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ-----SRSYYAA--GVP 113 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~-----~~~~f~~--gvp 113 (329)
....+|+|||||+|-.++.+... .....|++.|++. =...+-.++.. ...+-+. -.+
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~---------------~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg 107 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKL---------------FGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWG 107 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT----------------T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TT
T ss_pred cCCceEEEECCccchhHHHHHhc---------------cCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEec
Confidence 35679999999999888888642 0124899999986 32333333211 1111111 111
Q ss_pred cccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 114 GSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 114 gsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
-......+.++++|+|+.+=++.+= +.+..+++.-.+-|+|+|.++++.
T Consensus 108 ~~~~~~~~~~~~~D~IlasDv~Y~~-------------------------------~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 108 DELDSDLLEPHSFDVILASDVLYDE-------------------------------ELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp S-HHHHHHS-SSBSEEEEES--S-G-------------------------------GGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred CcccccccccccCCEEEEecccchH-------------------------------HHHHHHHHHHHHHhCCCCEEEEEe
Confidence 1122233455678888887776652 234578888899999999977777
Q ss_pred cccC
Q 037735 194 FSVP 197 (329)
Q Consensus 194 ~g~~ 197 (329)
.-|.
T Consensus 157 ~~R~ 160 (173)
T PF10294_consen 157 KRRR 160 (173)
T ss_dssp E-S-
T ss_pred CEec
Confidence 6664
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.024 Score=56.49 Aligned_cols=113 Identities=14% Similarity=0.090 Sum_probs=67.7
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--C---Ccceeeeccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--Q---SRSYYAAGVPGSFY 117 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~---~~~~f~~gvpgsFy 117 (329)
..+|||+|||||..++..+. ....+|+..|+.......+-+++. . .+-.++.|.--++.
T Consensus 221 g~rVLDlfsgtG~~~l~aa~----------------~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l 284 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALM----------------GGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLL 284 (396)
T ss_pred CCeEEEeccCCCHHHHHHHh----------------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHH
Confidence 36899999999998765432 111378999998766555433331 1 12235555422222
Q ss_pred cccC-CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 118 SSLF-PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 118 ~~lf-p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
.++- ...++|+|++ ++|.- ..+.... ....+++..++..-.+-|+|||.+++.+
T Consensus 285 ~~~~~~~~~fDlVil--------DPP~f---------~~~k~~l-----~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 285 RTYRDRGEKFDVIVM--------DPPKF---------VENKSQL-----MGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred HHHHhcCCCCCEEEE--------CCCCC---------CCChHHH-----HHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 2221 3457999984 45522 1111111 1345577788888899999999998766
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.051 Score=49.70 Aligned_cols=123 Identities=21% Similarity=0.243 Sum_probs=85.3
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccC
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLF 121 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lf 121 (329)
...++||+||=+..|...- .+-+.|..-||-+.+ . .+.- -+|.++.+
T Consensus 51 ~~lrlLEVGals~~N~~s~------------------~~~fdvt~IDLns~~-~----------~I~q----qDFm~rpl 97 (219)
T PF11968_consen 51 PKLRLLEVGALSTDNACST------------------SGWFDVTRIDLNSQH-P----------GILQ----QDFMERPL 97 (219)
T ss_pred ccceEEeecccCCCCcccc------------------cCceeeEEeecCCCC-C----------Ccee----eccccCCC
Confidence 4699999999988776543 223678888986422 1 1111 27889887
Q ss_pred C---CCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCce-----EEEEe
Q 037735 122 P---KSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGL-----AALVM 193 (329)
Q Consensus 122 p---~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~-----l~~~~ 193 (329)
| .+++|+|.+|..|.. +|.+ ++=-.-|+...+-|+|+|. |++.+
T Consensus 98 p~~~~e~FdvIs~SLVLNf---VP~p-------------------------~~RG~Ml~r~~~fL~~~g~~~~~~LFlVl 149 (219)
T PF11968_consen 98 PKNESEKFDVISLSLVLNF---VPDP-------------------------KQRGEMLRRAHKFLKPPGLSLFPSLFLVL 149 (219)
T ss_pred CCCcccceeEEEEEEEEee---CCCH-------------------------HHHHHHHHHHHHHhCCCCccCcceEEEEe
Confidence 5 789999999999999 5533 0111448888899999999 99988
Q ss_pred cccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 194 FSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 194 ~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
+-+.-. + -.|-+.+-++++++.-| |...+.+.
T Consensus 150 P~~Cv~-------------------------N------SRy~~~~~l~~im~~LG-f~~~~~~~ 181 (219)
T PF11968_consen 150 PLPCVT-------------------------N------SRYMTEERLREIMESLG-FTRVKYKK 181 (219)
T ss_pred CchHhh-------------------------c------ccccCHHHHHHHHHhCC-cEEEEEEe
Confidence 643310 0 23466788888888874 88776654
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0046 Score=58.26 Aligned_cols=67 Identities=12% Similarity=-0.002 Sum_probs=44.9
Q ss_pred cchHHHhHHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEec
Q 037735 8 HSYASNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFN 87 (329)
Q Consensus 8 ~sY~~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~n 87 (329)
.+|.+|-..+..++..+...+. ..+..+|+|+|||+|..|..+.+ + .+ +|+.-
T Consensus 18 k~~gq~fl~~~~i~~~i~~~l~----------~~~~~~VLEiG~G~G~lt~~L~~--------~-------~~--~v~av 70 (272)
T PRK00274 18 KSLGQNFLIDENILDKIVDAAG----------PQPGDNVLEIGPGLGALTEPLLE--------R-------AA--KVTAV 70 (272)
T ss_pred cccCcCcCCCHHHHHHHHHhcC----------CCCcCeEEEeCCCccHHHHHHHH--------h-------CC--cEEEE
Confidence 4566665566666655544432 23446899999999999999975 2 12 68888
Q ss_pred CCCcchHHhhhhcC
Q 037735 88 DHSDNDFNTLFKSL 101 (329)
Q Consensus 88 DLp~ndfn~lf~~l 101 (329)
|.-..+...+-+.+
T Consensus 71 E~d~~~~~~~~~~~ 84 (272)
T PRK00274 71 EIDRDLAPILAETF 84 (272)
T ss_pred ECCHHHHHHHHHhh
Confidence 98877766654444
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0047 Score=55.70 Aligned_cols=118 Identities=20% Similarity=0.338 Sum_probs=60.3
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhh---------hcCCCC--cceee
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLF---------KSLPQS--RSYYA 109 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf---------~~l~~~--~~~f~ 109 (329)
..+++|...|||||-=.-.+.=-+- +..... ..-.++++..|+...-....- +.+|+. ..||.
T Consensus 30 ~~~lrIWSagCStGeE~YSlAmll~----e~~~~~--~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~ 103 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAMLLL----ELLPGA--LGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFT 103 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHHHHH----HHH-S---TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEE
T ss_pred CCCeEEEECCCCCChhHHHHHHHHH----HHhccc--CCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhcc
Confidence 4789999999999954333321111 111111 122589999999765444422 222221 24553
Q ss_pred ecccccc-----------------ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcH
Q 037735 110 AGVPGSF-----------------YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDF 172 (329)
Q Consensus 110 ~gvpgsF-----------------y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~ 172 (329)
...++.| .+...|.+.+|+|+|-+.|-.++... =
T Consensus 104 ~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~-----------------------------~ 154 (196)
T PF01739_consen 104 ERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPET-----------------------------Q 154 (196)
T ss_dssp EE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHH-----------------------------H
T ss_pred ccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHH-----------------------------H
Confidence 3222211 12234677899999999888876321 1
Q ss_pred HHHHHHHHHHhccCceEEEEe
Q 037735 173 QTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 173 ~~FL~~ra~eL~pGG~l~~~~ 193 (329)
.+.++.-++.|+|||+|+++-
T Consensus 155 ~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 155 QRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp HHHHHHHGGGEEEEEEEEE-T
T ss_pred HHHHHHHHHHcCCCCEEEEec
Confidence 367899999999999998864
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.024 Score=49.65 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=59.5
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccc-----c
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGS-----F 116 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgs-----F 116 (329)
+..+++|+|||+|..|..+++.. .+...|+..|+...+ . ++ ...++.|..-+ -
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~--------------~~~~~v~avDl~~~~--~----~~--~~~~i~~d~~~~~~~~~ 80 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRG--------------GPAGRVVAVDLGPMD--P----LQ--NVSFIQGDITNPENIKD 80 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTST--------------TTEEEEEEEESSSTG--S-----T--TEEBTTGGGEEEEHSHH
T ss_pred cccEEEEcCCcccceeeeeeecc--------------cccceEEEEeccccc--c----cc--ceeeeecccchhhHHHh
Confidence 57999999999999999998521 233689999998651 0 01 01111111110 1
Q ss_pred ccccCCC--CceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 117 YSSLFPK--SSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 117 y~~lfp~--~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
....++. ..+|+++|=.+..+..+.- . ......+. ...-|..--+.|+|||.|++-++
T Consensus 81 i~~~~~~~~~~~dlv~~D~~~~~~g~~~-~-----------d~~~~~~l--------~~~~l~~a~~~L~~gG~~v~K~~ 140 (181)
T PF01728_consen 81 IRKLLPESGEKFDLVLSDMAPNVSGDRN-I-----------DEFISIRL--------ILSQLLLALELLKPGGTFVIKVF 140 (181)
T ss_dssp GGGSHGTTTCSESEEEE-------SSHH-S-----------SHHHHHHH--------HHHHHHHHHHHHCTTEEEEEEES
T ss_pred hhhhccccccCcceeccccccCCCCchh-h-----------HHHHHHHH--------HHHHHHHHHhhhcCCCEEEEEec
Confidence 1233333 6899999877655533210 0 00001111 11224455577999999999888
Q ss_pred ccC
Q 037735 195 SVP 197 (329)
Q Consensus 195 g~~ 197 (329)
...
T Consensus 141 ~~~ 143 (181)
T PF01728_consen 141 KGP 143 (181)
T ss_dssp SST
T ss_pred cCc
Confidence 733
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.008 Score=56.18 Aligned_cols=97 Identities=10% Similarity=-0.016 Sum_probs=60.4
Q ss_pred chHHHhHHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecC
Q 037735 9 SYASNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFND 88 (329)
Q Consensus 9 sY~~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nD 88 (329)
+|-||=...+.++..+...+. ..+..+|+|+|||+|..|..+.+ + . .+++.-|
T Consensus 6 ~~GQnfl~d~~~~~~iv~~~~----------~~~~~~VLEIG~G~G~lt~~L~~--------~--------~-~~v~~vE 58 (258)
T PRK14896 6 KLGQHFLIDDRVVDRIVEYAE----------DTDGDPVLEIGPGKGALTDELAK--------R--------A-KKVYAIE 58 (258)
T ss_pred cCCccccCCHHHHHHHHHhcC----------CCCcCeEEEEeCccCHHHHHHHH--------h--------C-CEEEEEE
Confidence 444555555555555444332 13347899999999999999975 1 1 3688888
Q ss_pred CCcchHHhhhhcCCCCcc-eeeeccccccccccCCCCceeEEEeccceec
Q 037735 89 HSDNDFNTLFKSLPQSRS-YYAAGVPGSFYSSLFPKSSLHFVHSSYTLHW 137 (329)
Q Consensus 89 Lp~ndfn~lf~~l~~~~~-~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhW 137 (329)
+-......+-+.+....+ -++.| ++.+-.+| .+|.++|+...++
T Consensus 59 id~~~~~~l~~~~~~~~~v~ii~~---D~~~~~~~--~~d~Vv~NlPy~i 103 (258)
T PRK14896 59 LDPRLAEFLRDDEIAAGNVEIIEG---DALKVDLP--EFNKVVSNLPYQI 103 (258)
T ss_pred CCHHHHHHHHHHhccCCCEEEEEe---ccccCCch--hceEEEEcCCccc
Confidence 887666665544432122 23443 56543344 4799999877766
|
|
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0054 Score=59.55 Aligned_cols=103 Identities=18% Similarity=0.251 Sum_probs=66.4
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCc--chHHhhhhcCCCCcceeeeccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSD--NDFNTLFKSLPQSRSYYAAGVPGSFYSS 119 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~--ndfn~lf~~l~~~~~~f~~gvpgsFy~~ 119 (329)
+.-+|+|.|||||.+|+.-+++= + ..|+.-|-.. +.-.++++.- ....+ +--+.|.-.+-
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG---------------A-~~V~aVe~S~ia~~a~~iv~~N-~~~~i-i~vi~gkvEdi 121 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG---------------A-RKVYAVEASSIADFARKIVKDN-GLEDV-ITVIKGKVEDI 121 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC---------------c-ceEEEEechHHHHHHHHHHHhc-Cccce-EEEeecceEEE
Confidence 45689999999999998876411 1 3566666431 1111122211 11111 22244566566
Q ss_pred cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEE
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAA 190 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~ 190 (329)
.+|-..+|+++|-|-=.||- ++.=|.+.|-+|=+-|+|||.++
T Consensus 122 ~LP~eKVDiIvSEWMGy~Ll----------------------------~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 122 ELPVEKVDIIVSEWMGYFLL----------------------------YESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred ecCccceeEEeehhhhHHHH----------------------------HhhhhhhhhhhhhhccCCCceEc
Confidence 68888999999998888864 23345577999999999999985
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.026 Score=60.28 Aligned_cols=113 Identities=10% Similarity=0.091 Sum_probs=68.7
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--C---Ccceeeeccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--Q---SRSYYAAGVPGSFY 117 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~---~~~~f~~gvpgsFy 117 (329)
..+|||+|||||..|+.+.. . .. .+|+..|+........-+++. . .+--|+.+..-.+.
T Consensus 539 g~rVLDlf~gtG~~sl~aa~--------~-------Ga-~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l 602 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAAL--------G-------GA-KSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWL 602 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHH--------C-------CC-CEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHH
Confidence 36899999999999999874 1 11 269999998766665544331 1 12234554322232
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
.++ .+++|+|++. +|.-... .....+ ....+|+..++..-.+-|+|||.+++++
T Consensus 603 ~~~--~~~fDlIilD--------PP~f~~~-------~~~~~~-----~~~~~~y~~l~~~a~~lL~~gG~l~~~~ 656 (702)
T PRK11783 603 KEA--REQFDLIFID--------PPTFSNS-------KRMEDS-----FDVQRDHVALIKDAKRLLRPGGTLYFSN 656 (702)
T ss_pred HHc--CCCcCEEEEC--------CCCCCCC-------Cccchh-----hhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 232 5689999875 4421000 000011 1234566778888899999999998875
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.061 Score=50.87 Aligned_cols=117 Identities=20% Similarity=0.334 Sum_probs=72.6
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC----------CCC--cceee
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL----------PQS--RSYYA 109 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l----------~~~--~~~f~ 109 (329)
+++||.-.|||||-=.=.+.-.+.+ ..... ....++|+..|+-..-....-... +.. +.||.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e----~~~~~--~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~ 169 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLE----ALGKL--AGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFE 169 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHH----Hhccc--cCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEe
Confidence 5899999999999644433322222 22110 134599999999765544432222 211 35776
Q ss_pred eccccccc--------------cccC---CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcH
Q 037735 110 AGVPGSFY--------------SSLF---PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDF 172 (329)
Q Consensus 110 ~gvpgsFy--------------~~lf---p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~ 172 (329)
-+..|+|- +.+. ..+-+|+|+|=+.|=.+++.-.
T Consensus 170 ~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q----------------------------- 220 (268)
T COG1352 170 RGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQ----------------------------- 220 (268)
T ss_pred ecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHH-----------------------------
Confidence 65544332 1111 3355888888888888765321
Q ss_pred HHHHHHHHHHhccCceEEEEe
Q 037735 173 QTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 173 ~~FL~~ra~eL~pGG~l~~~~ 193 (329)
.+.++.-+.-|+|||.|++.-
T Consensus 221 ~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 221 ERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred HHHHHHHHHHhCCCCEEEEcc
Confidence 267888999999999998754
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.059 Score=50.23 Aligned_cols=85 Identities=12% Similarity=0.258 Sum_probs=52.2
Q ss_pred CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCCc
Q 037735 122 PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIP 201 (329)
Q Consensus 122 p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~ 201 (329)
-..-+|+|.+-+--.|.. ..... .-+.+||+..++-|.|||+|++-=
T Consensus 163 ~~~~fDiIlcLSiTkWIH-------------LNwgD------------~GL~~ff~kis~ll~pgGiLvvEP-------- 209 (288)
T KOG2899|consen 163 IQPEFDIILCLSITKWIH-------------LNWGD------------DGLRRFFRKISSLLHPGGILVVEP-------- 209 (288)
T ss_pred ccccccEEEEEEeeeeEe-------------ccccc------------HHHHHHHHHHHHhhCcCcEEEEcC--------
Confidence 344678888877777743 22222 247799999999999999998731
Q ss_pred ccCCcccchHHHHHHHHHHHHhcCCcCCCcccCC---CHHHHHHHHHhCC-ceE
Q 037735 202 LVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNP---TPKELEGIIQRNG-NFT 251 (329)
Q Consensus 202 ~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~p---s~eE~~~~i~~~g-~f~ 251 (329)
+ -|+.-..+-+-+-.-+. .|++ .++....++-+.+ +|+
T Consensus 210 --Q-----pWksY~kaar~~e~~~~-----ny~~i~lkp~~f~~~l~q~~vgle 251 (288)
T KOG2899|consen 210 --Q-----PWKSYKKAARRSEKLAA-----NYFKIFLKPEDFEDWLNQIVVGLE 251 (288)
T ss_pred --C-----chHHHHHHHHHHHHhhc-----CccceecCHHHHHhhhhhhhhhee
Confidence 1 24444444333311121 5554 7888888876652 454
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.036 Score=53.33 Aligned_cols=70 Identities=11% Similarity=-0.017 Sum_probs=43.9
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcceeeeccccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSYYAAGVPGSFYSS 119 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~f~~gvpgsFy~~ 119 (329)
..+|+|+|||+|..|+.+.+ + ..+|+..|.........-++.. -.+--|..| ++.+-
T Consensus 174 ~~~VLDl~cG~G~~sl~la~--------~---------~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~---D~~~~ 233 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCAT--------P---------GMQLTGIEISAEAIACAKQSAAELGLTNVQFQAL---DSTQF 233 (315)
T ss_pred CCEEEEccCCCCHHHHHHHh--------c---------CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEc---CHHHH
Confidence 47899999999999988864 1 1479999998776655433321 112235554 34222
Q ss_pred cC-CCCceeEEEec
Q 037735 120 LF-PKSSLHFVHSS 132 (329)
Q Consensus 120 lf-p~~s~dl~~Ss 132 (329)
+. +.+.+|+++..
T Consensus 234 ~~~~~~~~D~Vv~d 247 (315)
T PRK03522 234 ATAQGEVPDLVLVN 247 (315)
T ss_pred HHhcCCCCeEEEEC
Confidence 21 34568888865
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.065 Score=47.90 Aligned_cols=140 Identities=15% Similarity=0.129 Sum_probs=79.3
Q ss_pred HhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC
Q 037735 23 ILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP 102 (329)
Q Consensus 23 ~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~ 102 (329)
.+++.|++...++.. ..+.-.+|+|||||--|-.+.+.+ .|....+..|+-.--.+.-.++..
T Consensus 27 lLlDaLekd~~eL~~---~~~~i~lEIG~GSGvvstfL~~~i--------------~~~~~~latDiNp~A~~~Tl~TA~ 89 (209)
T KOG3191|consen 27 LLLDALEKDAAELKG---HNPEICLEIGCGSGVVSTFLASVI--------------GPQALYLATDINPEALEATLETAR 89 (209)
T ss_pred HHHHHHHHHHHHHhh---cCceeEEEecCCcchHHHHHHHhc--------------CCCceEEEecCCHHHHHHHHHHHH
Confidence 356667777666532 236677999999999999998755 345677888884322221111110
Q ss_pred CCcceeeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcH-----HHHHHHH--HHHhhcHHHH
Q 037735 103 QSRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVN-----EVMEAYA--AQFNNDFQTF 175 (329)
Q Consensus 103 ~~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~-----~~~~ay~--~q~~~D~~~F 175 (329)
.. .+-+--|-.|+..-|-+ +++|+.+=+ +| |...++. ....||+ +--+.=..+|
T Consensus 90 ~n-~~~~~~V~tdl~~~l~~-~~VDvLvfN--------PP---------YVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~l 150 (209)
T KOG3191|consen 90 CN-RVHIDVVRTDLLSGLRN-ESVDVLVFN--------PP---------YVPTSDEEIGDEGIASAWAGGKDGREVTDRL 150 (209)
T ss_pred hc-CCccceeehhHHhhhcc-CCccEEEEC--------CC---------cCcCCcccchhHHHHHHHhcCcchHHHHHHH
Confidence 00 00011122245444444 777776533 22 1111111 1234444 3334446688
Q ss_pred HHHHHHHhccCceEEEEecccCC
Q 037735 176 LNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 176 L~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
|..--.-|.|.|++++.+.-++.
T Consensus 151 l~~v~~iLSp~Gv~Ylv~~~~N~ 173 (209)
T KOG3191|consen 151 LPQVPDILSPRGVFYLVALRANK 173 (209)
T ss_pred HhhhhhhcCcCceEEeeehhhcC
Confidence 99999999999999998866554
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.094 Score=49.73 Aligned_cols=127 Identities=14% Similarity=0.175 Sum_probs=69.1
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhc-----CCCCcceeee--ccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKS-----LPQSRSYYAA--GVPGS 115 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~-----l~~~~~~f~~--gvpgs 115 (329)
...|+|+|||||.-|+.++..+ |.-.++..|...---.-.-.+ +.. .+.+. -.-++
T Consensus 149 ~~~ildlgtGSGaIslsll~~L---------------~~~~v~AiD~S~~Ai~La~eN~qr~~l~g--~i~v~~~~me~d 211 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGL---------------PQCTVTAIDVSKAAIKLAKENAQRLKLSG--RIEVIHNIMESD 211 (328)
T ss_pred cceEEEecCCccHHHHHHHhcC---------------CCceEEEEeccHHHHHHHHHHHHHHhhcC--ceEEEecccccc
Confidence 3479999999999999998643 345788888763221111111 111 11110 01134
Q ss_pred ccccc-CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHh--------hcHHHHHHHHHHHhccC
Q 037735 116 FYSSL-FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFN--------NDFQTFLNTRAQELVPG 186 (329)
Q Consensus 116 Fy~~l-fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~--------~D~~~FL~~ra~eL~pG 186 (329)
.|... .+.+.+|+++|+=-.=-=. | |.+ ..|+|. .|..-.+ .-+..|+.-..+-|+||
T Consensus 212 ~~~~~~l~~~~~dllvsNPPYI~~d-----D-~~~------l~~eV~-~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~g 278 (328)
T KOG2904|consen 212 ASDEHPLLEGKIDLLVSNPPYIRKD-----D-NRQ------LKPEVR-LYEPKLALDGGLEGYDNLVHYWLLATRMLQPG 278 (328)
T ss_pred cccccccccCceeEEecCCCccccc-----c-hhh------cCchhe-ecCchhhhccccchhHHHHHHHHhhHhhcccC
Confidence 44444 6788899998862111100 1 110 011110 0000000 01347788889999999
Q ss_pred ceEEEEecccCCC
Q 037735 187 GLAALVMFSVPDG 199 (329)
Q Consensus 187 G~l~~~~~g~~~~ 199 (329)
|.+.|.+.+++..
T Consensus 279 g~~~le~~~~~~~ 291 (328)
T KOG2904|consen 279 GFEQLELVERKEH 291 (328)
T ss_pred CeEEEEecccccC
Confidence 9999999988654
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.026 Score=57.11 Aligned_cols=129 Identities=16% Similarity=0.207 Sum_probs=69.8
Q ss_pred HHhHHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCc
Q 037735 12 SNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSD 91 (329)
Q Consensus 12 ~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ 91 (329)
++...|+++..++.+.....-. ..+..+|+|+|||+|+++...++..-.. .-..+||.-.--.
T Consensus 162 KY~~Ye~AI~~al~D~~~~~~~------~~~~~vVldVGAGrGpL~~~al~A~~~~-----------~~a~~VyAVEkn~ 224 (448)
T PF05185_consen 162 KYDQYERAIEEALKDRVRKNSY------SSKDKVVLDVGAGRGPLSMFALQAGARA-----------GGAVKVYAVEKNP 224 (448)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-S------EETT-EEEEES-TTSHHHHHHHHTTHHH-----------CCESEEEEEESST
T ss_pred HHHHHHHHHHHHHHhhhhhccc------cccceEEEEeCCCccHHHHHHHHHHHHh-----------CCCeEEEEEcCCH
Confidence 4455666665555555542100 1135789999999999998887633111 1125788877655
Q ss_pred chHHhhhhcC--CC--CcceeeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHH
Q 037735 92 NDFNTLFKSL--PQ--SRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQ 167 (329)
Q Consensus 92 ndfn~lf~~l--~~--~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q 167 (329)
|-.-++-+.+ .. ..-.. +.|+. +.+-++..+|+++|= ||=..-. ....|
T Consensus 225 ~A~~~l~~~v~~n~w~~~V~v---i~~d~-r~v~lpekvDIIVSE----lLGsfg~----------nEl~p--------- 277 (448)
T PF05185_consen 225 NAVVTLQKRVNANGWGDKVTV---IHGDM-REVELPEKVDIIVSE----LLGSFGD----------NELSP--------- 277 (448)
T ss_dssp HHHHHHHHHHHHTTTTTTEEE---EES-T-TTSCHSS-EEEEEE-------BTTBT----------TTSHH---------
T ss_pred hHHHHHHHHHHhcCCCCeEEE---EeCcc-cCCCCCCceeEEEEe----ccCCccc----------cccCH---------
Confidence 5554442221 11 12222 33455 666666789999994 4322111 11222
Q ss_pred HhhcHHHHHHHHHHHhccCceEE
Q 037735 168 FNNDFQTFLNTRAQELVPGGLAA 190 (329)
Q Consensus 168 ~~~D~~~FL~~ra~eL~pGG~l~ 190 (329)
..|..|-+-|+|||.++
T Consensus 278 ------E~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 278 ------ECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ------HHHHHGGGGEEEEEEEE
T ss_pred ------HHHHHHHhhcCCCCEEe
Confidence 33788889999999875
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.1 Score=48.16 Aligned_cols=39 Identities=31% Similarity=0.244 Sum_probs=30.8
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHh
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNT 96 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~ 96 (329)
+..+++|+|||||.+|..+++ + .. -+|+.-|...++...
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~--------~-------ga-~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQ--------K-------GA-KEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHH--------c-------CC-CEEEEEeCCHHHHHH
Confidence 446899999999999998875 1 11 379999999877665
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.083 Score=41.27 Aligned_cols=103 Identities=21% Similarity=0.214 Sum_probs=61.1
Q ss_pred EEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCcc-ceEEecCCCcchHHhhhhcCCCCc---ceeeecccccccc--c
Q 037735 46 IADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIE-FQVFFNDHSDNDFNTLFKSLPQSR---SYYAAGVPGSFYS--S 119 (329)
Q Consensus 46 IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe-~~v~~nDLp~ndfn~lf~~l~~~~---~~f~~gvpgsFy~--~ 119 (329)
++|+|||+|..+ .+.. . .++ .+++..|................. ..+..+ +... .
T Consensus 52 ~ld~~~g~g~~~-~~~~-~--------------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 112 (257)
T COG0500 52 VLDIGCGTGRLA-LLAR-L--------------GGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVA---DALGGVL 112 (257)
T ss_pred eEEecCCcCHHH-HHHH-h--------------CCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEe---ccccCCC
Confidence 999999999988 2211 1 111 356666776544443211111010 122222 2333 2
Q ss_pred cCCC-CceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCC
Q 037735 120 LFPK-SSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 120 lfp~-~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
-+++ ..+|++.+...+||.. + ...+....+.|+|||.+++.......
T Consensus 113 ~~~~~~~~d~~~~~~~~~~~~--~------------------------------~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 113 PFEDSASFDLVISLLVLHLLP--P------------------------------AKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred CCCCCCceeEEeeeeehhcCC--H------------------------------HHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 2444 4899996666666654 1 26688999999999999999987665
Q ss_pred C
Q 037735 199 G 199 (329)
Q Consensus 199 ~ 199 (329)
.
T Consensus 161 ~ 161 (257)
T COG0500 161 L 161 (257)
T ss_pred C
Confidence 3
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.036 Score=50.10 Aligned_cols=70 Identities=16% Similarity=0.091 Sum_probs=38.5
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---Ccceeeeccccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---SRSYYAAGVPGSFYSS 119 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~~~~f~~gvpgsFy~~ 119 (329)
..+|+|+|||+|..++.+++ + .. .+|++.|.-..-...+-+++.. .+.-+..+ ++.+-
T Consensus 54 ~~~vLDl~~GsG~l~l~~ls--------r-------~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~---D~~~~ 114 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALS--------R-------YA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNT---NALSF 114 (199)
T ss_pred CCEEEEcCCCccHHHHHHHH--------c-------CC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEc---hHHHH
Confidence 35899999999999987654 1 11 3688878754333333333211 11123333 44332
Q ss_pred cC-CCCceeEEEe
Q 037735 120 LF-PKSSLHFVHS 131 (329)
Q Consensus 120 lf-p~~s~dl~~S 131 (329)
+. +..++|+|++
T Consensus 115 l~~~~~~fDlV~~ 127 (199)
T PRK10909 115 LAQPGTPHNVVFV 127 (199)
T ss_pred HhhcCCCceEEEE
Confidence 21 2346888875
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.017 Score=53.68 Aligned_cols=74 Identities=16% Similarity=0.042 Sum_probs=43.7
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcc-eeeecccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRS-YYAAGVPGSFYSSL 120 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~-~f~~gvpgsFy~~l 120 (329)
+..+|+|+|||+|..|..+.+ + .+ +++.-|.-......+-..+....+ .++. +++.+-.
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~--------~-------~~--~v~~iE~d~~~~~~l~~~~~~~~~v~v~~---~D~~~~~ 88 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLK--------R-------AK--KVTAIEIDPRLAEILRKLLSLYERLEVIE---GDALKVD 88 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHH--------h-------CC--cEEEEECCHHHHHHHHHHhCcCCcEEEEE---CchhcCC
Confidence 457899999999999999975 2 12 477777765554444333321112 2233 3554333
Q ss_pred CCCCcee---EEEeccceec
Q 037735 121 FPKSSLH---FVHSSYTLHW 137 (329)
Q Consensus 121 fp~~s~d---l~~Ss~alhW 137 (329)
++ ++| +++|+...|+
T Consensus 89 ~~--~~d~~~~vvsNlPy~i 106 (253)
T TIGR00755 89 LP--DFPKQLKVVSNLPYNI 106 (253)
T ss_pred hh--HcCCcceEEEcCChhh
Confidence 33 455 7777766665
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.072 Score=51.82 Aligned_cols=112 Identities=17% Similarity=0.168 Sum_probs=68.9
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCc-ceeeeccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSR-SYYAAGVPGSFYSS 119 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~-~~f~~gvpgsFy~~ 119 (329)
-.-..|+|.|||+|.+|+..++.= -..||...- +||-...-+.+.... .--+.-+||-..+-
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAG----------------A~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdi 238 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAG----------------AKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDI 238 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhC----------------cceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccc
Confidence 345678999999999999887511 135665553 456554444333210 11234478888444
Q ss_pred cCCCCceeEEEeccceecccCCCCC--CCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKV--DGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~--~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
-+| +.+|+++|- |-. -.| ++=++++|.+| +-|+|.|.|+ -++|+=
T Consensus 239 eLP-Ek~DviISE---------PMG~mL~N---------------------ERMLEsYl~Ar-k~l~P~GkMf-PT~gdi 285 (517)
T KOG1500|consen 239 ELP-EKVDVIISE---------PMGYMLVN---------------------ERMLESYLHAR-KWLKPNGKMF-PTVGDI 285 (517)
T ss_pred cCc-hhccEEEec---------cchhhhhh---------------------HHHHHHHHHHH-hhcCCCCccc-Ccccce
Confidence 455 669999872 433 012 23466889999 9999999986 445655
Q ss_pred CCCcc
Q 037735 198 DGIPL 202 (329)
Q Consensus 198 ~~~~~ 202 (329)
...|.
T Consensus 286 HlAPF 290 (517)
T KOG1500|consen 286 HLAPF 290 (517)
T ss_pred eeccc
Confidence 55454
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.037 Score=50.22 Aligned_cols=105 Identities=13% Similarity=0.173 Sum_probs=62.9
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhh---hhcCCC-Ccceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTL---FKSLPQ-SRSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~l---f~~l~~-~~~~f~~gvpgsFy 117 (329)
++.+|+|+||++|.-|+.+...+ ++..+|+--|.-....... |+..+- .+--+..|.+..+.
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l--------------~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l 110 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEAL--------------PEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVL 110 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTS--------------TTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHH
T ss_pred CCceEEEeccccccHHHHHHHhh--------------cccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhH
Confidence 56899999999999999988633 2335788888754322221 222121 12335666555665
Q ss_pred cccCCC---CceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 118 SSLFPK---SSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 118 ~~lfp~---~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
.+|.+. +.+||||-=. . | .+...+|....+-|+|||.+++-..
T Consensus 111 ~~l~~~~~~~~fD~VFiDa--------~-----K---------------------~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 111 PELANDGEEGQFDFVFIDA--------D-----K---------------------RNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp HHHHHTTTTTSEEEEEEES--------T-----G---------------------GGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred HHHHhccCCCceeEEEEcc--------c-----c---------------------cchhhHHHHHhhhccCCeEEEEccc
Confidence 666554 4688887422 1 1 1223445555679999999998654
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.1 Score=52.31 Aligned_cols=69 Identities=10% Similarity=0.067 Sum_probs=42.4
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---Ccceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---SRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~~~~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|..|+.+.+.. ..|+..|.........-+++.. ..--|+.| ++.+
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~-----------------~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~---d~~~ 351 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQA-----------------KSVVGIEVVPESVEKAQQNAELNGIANVEFLAG---TLET 351 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhC-----------------CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeC---CHHH
Confidence 34689999999999999886411 2688899876666554443311 11234544 3422
Q ss_pred ---cc-CCCCceeEEE
Q 037735 119 ---SL-FPKSSLHFVH 130 (329)
Q Consensus 119 ---~l-fp~~s~dl~~ 130 (329)
.+ +.++++|+++
T Consensus 352 ~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 352 VLPKQPWAGQIPDVLL 367 (431)
T ss_pred HHHHHHhcCCCCCEEE
Confidence 11 3345788877
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.062 Score=49.34 Aligned_cols=105 Identities=16% Similarity=0.211 Sum_probs=67.1
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcce-eeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSY-YAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~-f~~gvpgsF 116 (329)
.++-+|+|+|.+.|.-|+.+...+ +.+.+++-.|.........-+++. -...+ .+.| |+.
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l--------------~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~--gda 121 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALAL--------------PDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLG--GDA 121 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhC--------------CCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec--CcH
Confidence 467899999999999998887643 225689999987765554444432 22222 2232 344
Q ss_pred cccc--CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 117 YSSL--FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 117 y~~l--fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
-+.| +..+++||+|= ... +.+...||...-+-|+|||++++=..
T Consensus 122 l~~l~~~~~~~fDliFI----------Dad------------------------K~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 122 LDVLSRLLDGSFDLVFI----------DAD------------------------KADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred HHHHHhccCCCccEEEE----------eCC------------------------hhhCHHHHHHHHHHhCCCcEEEEeec
Confidence 3333 46788888873 111 11223677777788999999998665
Q ss_pred c
Q 037735 195 S 195 (329)
Q Consensus 195 g 195 (329)
-
T Consensus 168 l 168 (219)
T COG4122 168 L 168 (219)
T ss_pred c
Confidence 3
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.48 Score=44.79 Aligned_cols=174 Identities=17% Similarity=0.172 Sum_probs=79.6
Q ss_pred hHhhHHHHHhhcccCCCCCceEEEeeeCC--CCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhh---h
Q 037735 24 LRYDPRTAVTDLGTNAVPNTFRIADFGCS--TGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTL---F 98 (329)
Q Consensus 24 ~~~~l~~ai~~i~~~~~~~~~~IaDlGCs--tG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~l---f 98 (329)
....|..+++.+.. ..+....+||||| |-.|+-.+.+.+ .|+..|++.|- |=-.+ -
T Consensus 52 nR~Fl~RaVr~la~--~~GIrQFLDlGsGlPT~~nvHevAq~~--------------~P~aRVVYVD~---DPvv~ah~r 112 (267)
T PF04672_consen 52 NRAFLRRAVRYLAE--EAGIRQFLDLGSGLPTAGNVHEVAQRV--------------APDARVVYVDN---DPVVLAHAR 112 (267)
T ss_dssp HHHHHHHHHHHHHC--TT---EEEEET--S--SS-HHHHHHHH---------------TT-EEEEEES---SHHHHHCCH
T ss_pred HHHHHHHHHHHHHH--hcCcceEEEcccCCCCCCCHhHHHHhh--------------CCCceEEEECC---CchHHHHHH
Confidence 34444555554321 2256779999999 445666666544 57788988884 42221 1
Q ss_pred hcCCCCc---ceeeecccc---cccc-----ccC-CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHH
Q 037735 99 KSLPQSR---SYYAAGVPG---SFYS-----SLF-PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAA 166 (329)
Q Consensus 99 ~~l~~~~---~~f~~gvpg---sFy~-----~lf-p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~ 166 (329)
..|.... .-|+.|.-. +..+ +++ .+.-+ -+.-...|||+.+-.
T Consensus 113 alL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPV-avll~~vLh~v~D~~------------------------ 167 (267)
T PF04672_consen 113 ALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFDRPV-AVLLVAVLHFVPDDD------------------------ 167 (267)
T ss_dssp HHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TTS---EEEECT-GGGS-CGC------------------------
T ss_pred hhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCe-eeeeeeeeccCCCcc------------------------
Confidence 1122211 334444222 1111 222 22323 244566789986532
Q ss_pred HHhhcHHHHHHHHHHHhccCceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHh
Q 037735 167 QFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQR 246 (329)
Q Consensus 167 q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~ 246 (329)
|-...++.-...|.||.+|+++-...+.. +. ..+.+...+.+ .|. ..+.+|.+|+.+.+.
T Consensus 168 ----dp~~iv~~l~d~lapGS~L~ish~t~d~~-p~-------~~~~~~~~~~~---~~~----~~~~Rs~~ei~~~f~- 227 (267)
T PF04672_consen 168 ----DPAGIVARLRDALAPGSYLAISHATDDGA-PE-------RAEALEAVYAQ---AGS----PGRPRSREEIAAFFD- 227 (267)
T ss_dssp ----THHHHHHHHHCCS-TT-EEEEEEEB-TTS-HH-------HHHHHHHHHHH---CCS--------B-HHHHHHCCT-
T ss_pred ----CHHHHHHHHHHhCCCCceEEEEecCCCCC-HH-------HHHHHHHHHHc---CCC----CceecCHHHHHHHcC-
Confidence 33466777788999999999999976532 10 11233333322 121 178899999999876
Q ss_pred CCceEEeEEEEeecC-cc
Q 037735 247 NGNFTIERMEKMTNP-KQ 263 (329)
Q Consensus 247 ~g~f~i~~~e~~~~~-~~ 263 (329)
+|++..=-....+ |-
T Consensus 228 --g~elvePGlv~~~~Wr 243 (267)
T PF04672_consen 228 --GLELVEPGLVPVPRWR 243 (267)
T ss_dssp --TSEE-TT-SEEGGGSS
T ss_pred --CCccCCCceecccccC
Confidence 5887654433333 54
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.081 Score=49.73 Aligned_cols=97 Identities=15% Similarity=0.155 Sum_probs=67.0
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccC
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLF 121 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lf 121 (329)
+..+++|+|.|.|.-|..+.... -+|+..+....|=..|-+. .|=+..+ -+..+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f-----------------~~v~aTE~S~~Mr~rL~~k-----g~~vl~~-~~w~~--- 147 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF-----------------KEVYATEASPPMRWRLSKK-----GFTVLDI-DDWQQ--- 147 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc-----------------ceEEeecCCHHHHHHHHhC-----CCeEEeh-hhhhc---
Confidence 56789999999999999986422 2588888887775555331 1111110 01111
Q ss_pred CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 122 PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 122 p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
-+..+|+|.+.+-|-=+.++- +.|+...+.|+|+|++++++.=
T Consensus 148 ~~~~fDvIscLNvLDRc~~P~-------------------------------~LL~~i~~~l~p~G~lilAvVl 190 (265)
T PF05219_consen 148 TDFKFDVISCLNVLDRCDRPL-------------------------------TLLRDIRRALKPNGRLILAVVL 190 (265)
T ss_pred cCCceEEEeehhhhhccCCHH-------------------------------HHHHHHHHHhCCCCEEEEEEEe
Confidence 124699999888887766532 7799999999999999999863
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.26 Score=46.18 Aligned_cols=99 Identities=18% Similarity=0.235 Sum_probs=68.2
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhh-hhcCCC----Ccceeeecccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTL-FKSLPQ----SRSYYAAGVPGSF 116 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~l-f~~l~~----~~~~f~~gvpgsF 116 (329)
+-.+|+|.|.|||..|..+...+ .|+-+|+--|.-. ||-.. .+++.. ++..+.. |+.
T Consensus 94 pg~rVlEAGtGSG~lt~~La~~v--------------g~~G~v~tyE~r~-d~~k~A~~Nl~~~~l~d~v~~~~---~Dv 155 (256)
T COG2519 94 PGSRVLEAGTGSGALTAYLARAV--------------GPEGHVTTYEIRE-DFAKTARENLSEFGLGDRVTLKL---GDV 155 (256)
T ss_pred CCCEEEEcccCchHHHHHHHHhh--------------CCCceEEEEEecH-HHHHHHHHHHHHhccccceEEEe---ccc
Confidence 45799999999999999998644 4556788888764 55443 333321 1122233 567
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
.+-.++. .+|.++- ++|.+ | +.+...+..|+|||.+++-++.
T Consensus 156 ~~~~~~~-~vDav~L--------Dmp~P-W---------------------------~~le~~~~~Lkpgg~~~~y~P~ 197 (256)
T COG2519 156 REGIDEE-DVDAVFL--------DLPDP-W---------------------------NVLEHVSDALKPGGVVVVYSPT 197 (256)
T ss_pred ccccccc-ccCEEEE--------cCCCh-H---------------------------HHHHHHHHHhCCCcEEEEEcCC
Confidence 7777776 7888763 45643 3 5599999999999998887744
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.13 Score=52.40 Aligned_cols=126 Identities=13% Similarity=0.175 Sum_probs=75.3
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC--cce-eeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS--RSY-YAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~--~~~-f~~gvpgsFy~ 118 (329)
...+|+|++||.|.=|..+.+.+ ..+-.|+.||...+-...+-.++... .++ .....+..+ .
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l--------------~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~-~ 177 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALM--------------NNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVF-G 177 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHc--------------CCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhh-h
Confidence 45789999999999999987632 12247999999877777766555321 222 223333322 2
Q ss_pred ccCCCCceeEEEeccceecccCCCCC-C--CCcc-ceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKV-D--GVEG-SIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~-~--~n~g-~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
..+| +.+|.|. -|+||+ . +-|. .+...-++..+.+.-..| ..+|..-++-|+|||.|+-+|.
T Consensus 178 ~~~~-~~fD~IL--------vDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ-----~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 178 AALP-ETFDAIL--------LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQ-----RELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred hhch-hhcCeEE--------EcCCCCCCcccccCHHHhhhCCHHHHHHHHHHH-----HHHHHHHHHHcCCCcEEEEECC
Confidence 2233 4567665 345665 1 1111 011111333344433344 3789999999999999999997
Q ss_pred cc
Q 037735 195 SV 196 (329)
Q Consensus 195 g~ 196 (329)
.-
T Consensus 244 T~ 245 (470)
T PRK11933 244 TL 245 (470)
T ss_pred CC
Confidence 63
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.13 Score=48.90 Aligned_cols=39 Identities=13% Similarity=0.092 Sum_probs=28.9
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcch
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDND 93 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~nd 93 (329)
.++-+|+|+||++|.-|+.+...+ .+..+++--|.....
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al--------------~~~G~V~TiE~d~e~ 155 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVL--------------PESGCLVACERDSNS 155 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhC--------------CCCCEEEEEECCHHH
Confidence 357899999999999999887532 234568888876533
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.026 Score=53.98 Aligned_cols=76 Identities=17% Similarity=0.100 Sum_probs=47.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---Ccc-eeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---SRS-YYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~~~-~f~~gvpgsFy 117 (329)
...+|+|+|||+|..|..++... .+|+.-|+-......+-+.+.. ..+ -++. +++.
T Consensus 36 ~~~~VLEIG~G~G~LT~~Ll~~~-----------------~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~---~Dal 95 (294)
T PTZ00338 36 PTDTVLEIGPGTGNLTEKLLQLA-----------------KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIE---GDAL 95 (294)
T ss_pred CcCEEEEecCchHHHHHHHHHhC-----------------CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEE---CCHh
Confidence 34689999999999999887511 2578888776555554433321 111 2333 3564
Q ss_pred cccCCCCceeEEEeccceeccc
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLS 139 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs 139 (329)
+.-++ .+|.++++.-.+|-+
T Consensus 96 ~~~~~--~~d~VvaNlPY~Ist 115 (294)
T PTZ00338 96 KTEFP--YFDVCVANVPYQISS 115 (294)
T ss_pred hhccc--ccCEEEecCCcccCc
Confidence 43333 578888887777644
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.19 Score=46.95 Aligned_cols=37 Identities=14% Similarity=0.134 Sum_probs=28.2
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSD 91 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ 91 (329)
.++.+|+|+|+++|.-|+.+...+ +++.+++--|...
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al--------------~~~g~v~tiE~~~ 114 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALAL--------------PEDGKILAMDINR 114 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhC--------------CCCCEEEEEeCCH
Confidence 357899999999999998887532 3346788888764
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.23 Score=48.55 Aligned_cols=111 Identities=14% Similarity=0.107 Sum_probs=64.3
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC-------CCcceeeeccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP-------QSRSYYAAGVP 113 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~-------~~~~~f~~gvp 113 (329)
+++.+||.+|+|.|.....+++ . .+.-++...|+-.......-+.++ +.+--.+.+++
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~--------~-------~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da 166 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLR--------H-------KTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDA 166 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHh--------C-------CCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChh
Confidence 4678999999999987776653 1 122367888886554443333332 11223445554
Q ss_pred cccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHH-HHHHHhccCceEEEE
Q 037735 114 GSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLN-TRAQELVPGGLAALV 192 (329)
Q Consensus 114 gsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~-~ra~eL~pGG~l~~~ 192 (329)
..|-++ .++++|+|+.-.+=.|-. .++ ..-|.. .|++ ...+-|+|||++++.
T Consensus 167 ~~~L~~--~~~~yDvIi~D~~dp~~~----------------~~~--~~Lyt~-------eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 167 RAELEK--RDEKFDVIIGDLADPVEG----------------GPC--YQLYTK-------SFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred HHHHhh--CCCCccEEEecCCCcccc----------------Ccc--hhhccH-------HHHHHHHHHhcCCCcEEEEe
Confidence 455433 356788888764311210 000 112222 6777 778999999998875
Q ss_pred e
Q 037735 193 M 193 (329)
Q Consensus 193 ~ 193 (329)
.
T Consensus 220 ~ 220 (336)
T PLN02823 220 A 220 (336)
T ss_pred c
Confidence 4
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.11 Score=50.51 Aligned_cols=76 Identities=5% Similarity=0.039 Sum_probs=46.5
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---C-cce--eeeccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---S-RSY--YAAGVPGS 115 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~-~~~--f~~gvpgs 115 (329)
...+|+|+|||+|.....+.. + .+..+++..|+-..-....-+++.. . ..+ .....+++
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~--------~-------~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~ 178 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGV--------H-------EYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKA 178 (321)
T ss_pred CCceEEEecCCccHHHHHHHh--------h-------CCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhh
Confidence 468999999999976666643 2 2336899999865444443333211 1 111 22334455
Q ss_pred ccccc-CCCCceeEEEec
Q 037735 116 FYSSL-FPKSSLHFVHSS 132 (329)
Q Consensus 116 Fy~~l-fp~~s~dl~~Ss 132 (329)
++..+ .+.+.+|+++|+
T Consensus 179 i~~~i~~~~~~fDlivcN 196 (321)
T PRK11727 179 IFKGIIHKNERFDATLCN 196 (321)
T ss_pred hhhcccccCCceEEEEeC
Confidence 55444 477899999987
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.6 Score=48.05 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=31.2
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHh
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNT 96 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~ 96 (329)
...+|+|.|||+|.+...++..+.. . ......+..++..|.-..-...
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~----~---~~~~~~~~~i~g~DId~~a~~~ 78 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEE----I---NYFKEVELNIYFADIDKTLLKR 78 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHh----c---CCcccceeeeeeechhHHHHHH
Confidence 5679999999999998888765421 0 0001134678888886544333
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=93.24 E-value=2.1 Score=40.55 Aligned_cols=91 Identities=19% Similarity=0.274 Sum_probs=58.1
Q ss_pred eccccccccccCCC---CceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccC
Q 037735 110 AGVPGSFYSSLFPK---SSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPG 186 (329)
Q Consensus 110 ~gvpgsFy~~lfp~---~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pG 186 (329)
..+.|+|.+---++ ++.|.|++.+=+- . ++++-.+|....+-|+||
T Consensus 147 sm~aGDF~e~y~~~~~~~~~d~VvT~FFID----T---------------------------A~Ni~~Yi~tI~~lLkpg 195 (270)
T PF07942_consen 147 SMCAGDFLEVYGPDENKGSFDVVVTCFFID----T---------------------------AENIIEYIETIEHLLKPG 195 (270)
T ss_pred eEecCccEEecCCcccCCcccEEEEEEEee----c---------------------------hHHHHHHHHHHHHHhccC
Confidence 34557885444444 5888888874322 1 235568899999999999
Q ss_pred ceEEEEecccCCCCcccCCcccchHHHHHHHHHHH--HhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 187 GLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVEL--TKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 187 G~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l--~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
| +...+||=--.. .++ ..+. ---.|.||++.+++.- ||++++-+.
T Consensus 196 G--~WIN~GPLlyh~-----------------~~~~~~~~~------sveLs~eEi~~l~~~~-GF~~~~~~~ 242 (270)
T PF07942_consen 196 G--YWINFGPLLYHF-----------------EPMSIPNEM------SVELSLEEIKELIEKL-GFEIEKEES 242 (270)
T ss_pred C--EEEecCCccccC-----------------CCCCCCCCc------ccCCCHHHHHHHHHHC-CCEEEEEEE
Confidence 9 556666532110 001 0011 2236899999999998 599988776
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=93.21 E-value=1.2 Score=42.09 Aligned_cols=82 Identities=21% Similarity=0.293 Sum_probs=43.3
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHh---hhhcCCCCcceeeeccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNT---LFKSLPQSRSYYAAGVPGSFY 117 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~---lf~~l~~~~~~f~~gvpgsFy 117 (329)
-.|.+|+|+|||.|.-+..+.+ .++. . .+++.-|....+-+- +++..+...... ....++
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~--------~~~~-----~-~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~---~~~~~~ 94 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAARE--------VWPS-----L-KEYTCVDRSPEMLELAKRLLRAGPNNRNAE---WRRVLY 94 (274)
T ss_pred CCCceEEEecCChHHHHHHHHH--------HhcC-----c-eeeeeecCCHHHHHHHHHHHhcccccccch---hhhhhh
Confidence 4678999999999975443322 2321 1 367888876555332 233222211100 112233
Q ss_pred cccCCCCceeEEEeccceeccc
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLS 139 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs 139 (329)
....+-..-||++++++|-=|.
T Consensus 95 ~~~~~~~~~DLvi~s~~L~EL~ 116 (274)
T PF09243_consen 95 RDFLPFPPDDLVIASYVLNELP 116 (274)
T ss_pred cccccCCCCcEEEEehhhhcCC
Confidence 2222222339999999986543
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.26 Score=48.99 Aligned_cols=71 Identities=10% Similarity=-0.002 Sum_probs=47.0
Q ss_pred CCcchHHHhHHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEE
Q 037735 6 GAHSYASNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVF 85 (329)
Q Consensus 6 g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~ 85 (329)
+.-.|+-|...-+.+...+...+.. ..+..+|+|++||+|..++.+.... .. ..|+
T Consensus 30 ~~vFyqp~~~~nrdl~~~v~~~~~~---------~~~~~~vLDl~aGsG~~~l~~a~~~--------------~~-~~V~ 85 (382)
T PRK04338 30 APVFYNPRMELNRDISVLVLRAFGP---------KLPRESVLDALSASGIRGIRYALET--------------GV-EKVT 85 (382)
T ss_pred CCeeeCccccchhhHHHHHHHHHHh---------hcCCCEEEECCCcccHHHHHHHHHC--------------CC-CEEE
Confidence 4567888877777666665555431 1123689999999999999987521 11 3799
Q ss_pred ecCCCcchHHhhhhc
Q 037735 86 FNDHSDNDFNTLFKS 100 (329)
Q Consensus 86 ~nDLp~ndfn~lf~~ 100 (329)
.+|.-.+-...+-++
T Consensus 86 a~Din~~Av~~a~~N 100 (382)
T PRK04338 86 LNDINPDAVELIKKN 100 (382)
T ss_pred EEeCCHHHHHHHHHH
Confidence 999976554444433
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.62 Score=43.60 Aligned_cols=100 Identities=15% Similarity=0.151 Sum_probs=57.6
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhh-hcC---CCCcce-eeecccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLF-KSL---PQSRSY-YAAGVPGSF 116 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf-~~l---~~~~~~-f~~gvpgsF 116 (329)
.-.+|+|-|.|+|..|..+...+ .|.-.|+--|.-. ||-... +++ .-..++ +.. ++.
T Consensus 40 pG~~VlEaGtGSG~lt~~l~r~v--------------~p~G~v~t~E~~~-~~~~~A~~n~~~~gl~~~v~~~~---~Dv 101 (247)
T PF08704_consen 40 PGSRVLEAGTGSGSLTHALARAV--------------GPTGHVYTYEFRE-DRAEKARKNFERHGLDDNVTVHH---RDV 101 (247)
T ss_dssp TT-EEEEE--TTSHHHHHHHHHH--------------TTTSEEEEEESSH-HHHHHHHHHHHHTTCCTTEEEEE---S-G
T ss_pred CCCEEEEecCCcHHHHHHHHHHh--------------CCCeEEEccccCH-HHHHHHHHHHHHcCCCCCceeEe---cce
Confidence 34799999999999999998765 4555777777653 443322 121 111111 222 234
Q ss_pred ccccCC---CCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHh-ccCceEEEE
Q 037735 117 YSSLFP---KSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQEL-VPGGLAALV 192 (329)
Q Consensus 117 y~~lfp---~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL-~pGG~l~~~ 192 (329)
++--|+ ++.+|.+|- |+|.+ | ..+..-.+.| +|||.+++-
T Consensus 102 ~~~g~~~~~~~~~DavfL--------Dlp~P-w---------------------------~~i~~~~~~L~~~gG~i~~f 145 (247)
T PF08704_consen 102 CEEGFDEELESDFDAVFL--------DLPDP-W---------------------------EAIPHAKRALKKPGGRICCF 145 (247)
T ss_dssp GCG--STT-TTSEEEEEE--------ESSSG-G---------------------------GGHHHHHHHE-EEEEEEEEE
T ss_pred ecccccccccCcccEEEE--------eCCCH-H---------------------------HHHHHHHHHHhcCCceEEEE
Confidence 333332 356777763 46644 3 2278888999 999998887
Q ss_pred ecc
Q 037735 193 MFS 195 (329)
Q Consensus 193 ~~g 195 (329)
.++
T Consensus 146 sP~ 148 (247)
T PF08704_consen 146 SPC 148 (247)
T ss_dssp ESS
T ss_pred CCC
Confidence 754
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.9 Score=42.25 Aligned_cols=143 Identities=17% Similarity=0.207 Sum_probs=85.9
Q ss_pred CCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC-----cceeeecccc
Q 037735 40 VPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS-----RSYYAAGVPG 114 (329)
Q Consensus 40 ~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~-----~~~f~~gvpg 114 (329)
..+-.+++|+|+|||.+|.-+++ + .. -.||.-|.-.|..--=++.-|.- .+. =...|.
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~lLq--------~-------gA-k~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~-r~l~~~ 139 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDVLLQ--------R-------GA-KHVYAVDVGYGQLHWKLRNDPRVIVLERTNV-RYLTPE 139 (245)
T ss_pred CCCCCEEEEecCCCccHHHHHHH--------c-------CC-cEEEEEEccCCccCHhHhcCCcEEEEecCCh-hhCCHH
Confidence 45668899999999999999986 2 11 37999998876544434333310 011 011233
Q ss_pred ccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 115 SFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 115 sFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
.|.+ -+||+++--++== +...|..-...++|||-+++-+
T Consensus 140 ~~~~------~~d~~v~DvSFIS----------------------------------L~~iLp~l~~l~~~~~~~v~Lv- 178 (245)
T COG1189 140 DFTE------KPDLIVIDVSFIS----------------------------------LKLILPALLLLLKDGGDLVLLV- 178 (245)
T ss_pred Hccc------CCCeEEEEeehhh----------------------------------HHHHHHHHHHhcCCCceEEEEe-
Confidence 4433 3456555433322 2355888889999999877665
Q ss_pred ccCCCCcccCCcccchHHHHHHHHHHHH-hcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 195 SVPDGIPLVNNAAGSFYNTFGSCLVELT-KMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 195 g~~~~~~~~~~~~~~~~~~l~~a~~~l~-~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
.+. |+.= ++.+ ..|++...+..-+..+++....... +|.+..+...
T Consensus 179 -KPQ------------FEag----r~~v~kkGvv~d~~~~~~v~~~i~~~~~~~-g~~~~gl~~S 225 (245)
T COG1189 179 -KPQ------------FEAG----REQVGKKGVVRDPKLHAEVLSKIENFAKEL-GFQVKGLIKS 225 (245)
T ss_pred -cch------------hhhh----hhhcCcCceecCcchHHHHHHHHHHHHhhc-CcEEeeeEcc
Confidence 221 1111 2333 4566666655556677888877777 5988877643
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=91.72 E-value=0.26 Score=46.34 Aligned_cols=82 Identities=21% Similarity=0.214 Sum_probs=55.4
Q ss_pred ceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCCcccC
Q 037735 125 SLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVN 204 (329)
Q Consensus 125 s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~ 204 (329)
..|.++|+++|.=.++-+ + .+.+-+++-+.-|+|||.|++......+....++
T Consensus 158 ~~D~v~s~fcLE~a~~d~-------------------~--------~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~ 210 (256)
T PF01234_consen 158 KFDCVISSFCLESACKDL-------------------D--------EYRRALRNISSLLKPGGHLILAGVLGSTYYMVGG 210 (256)
T ss_dssp SEEEEEEESSHHHH-SSH-------------------H--------HHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETT
T ss_pred chhhhhhhHHHHHHcCCH-------------------H--------HHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECC
Confidence 599999999998876533 1 2345588889999999999999876554322110
Q ss_pred CcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 205 NAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 205 ~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
..+. ...-+.+.++++|+++ +|+|...+.
T Consensus 211 ---~~F~--------------------~l~l~ee~v~~al~~a-G~~i~~~~~ 239 (256)
T PF01234_consen 211 ---HKFP--------------------CLPLNEEFVREALEEA-GFDIEDLEK 239 (256)
T ss_dssp ---EEEE-----------------------B-HHHHHHHHHHT-TEEEEEEEG
T ss_pred ---Eecc--------------------cccCCHHHHHHHHHHc-CCEEEeccc
Confidence 0000 3335889999999999 599998883
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=91.04 E-value=1.3 Score=40.15 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=14.7
Q ss_pred hcHHHHHHHHHHHhccCceEE
Q 037735 170 NDFQTFLNTRAQELVPGGLAA 190 (329)
Q Consensus 170 ~D~~~FL~~ra~eL~pGG~l~ 190 (329)
.|+..-|..+..+|++|-+++
T Consensus 135 ~~l~~~L~~~~~~lk~G~~II 155 (205)
T PF08123_consen 135 PDLNLALAELLLELKPGARII 155 (205)
T ss_dssp HHHHHHHHHHHTTS-TT-EEE
T ss_pred HHHHHHHHHHHhcCCCCCEEE
Confidence 456677889999999887754
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=90.93 E-value=0.48 Score=40.01 Aligned_cols=57 Identities=11% Similarity=0.102 Sum_probs=36.5
Q ss_pred HHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCc
Q 037735 22 YILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSD 91 (329)
Q Consensus 22 ~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ 91 (329)
+++..+|...++... ....+.+|+|+|||.|++|+.+...+ ... .+..+|+.-|.-.
T Consensus 7 ~~~~~~i~~~~~~~~--~~~~~~~vvD~GsG~GyLs~~La~~l--------~~~---~~~~~v~~iD~~~ 63 (141)
T PF13679_consen 7 ERMAELIDSLCDSVG--ESKRCITVVDLGSGKGYLSRALAHLL--------CNS---SPNLRVLGIDCNE 63 (141)
T ss_pred HHHHHHHHHHHHHhh--ccCCCCEEEEeCCChhHHHHHHHHHH--------Hhc---CCCCeEEEEECCc
Confidence 445555555443311 13567899999999999999997522 111 2457888888753
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=90.22 E-value=1.9 Score=40.90 Aligned_cols=128 Identities=16% Similarity=0.195 Sum_probs=64.4
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhc--CCCC-cc--eeeeccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKS--LPQS-RS--YYAAGVPGS 115 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~--l~~~-~~--~f~~gvpgs 115 (329)
....+|+|-.||+|.+-..++..+.+.- .. .++.+++..|+-.........+ +... .. .... ++
T Consensus 45 ~~~~~VlDPacGsG~fL~~~~~~i~~~~-~~-------~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~---~d 113 (311)
T PF02384_consen 45 KKGDSVLDPACGSGGFLVAAMEYIKEKR-NK-------IKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQ---GD 113 (311)
T ss_dssp -TTEEEEETT-TTSHHHHHHHHHHHTCH-HH-------HCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEE---S-
T ss_pred cccceeechhhhHHHHHHHHHHhhcccc-cc-------cccceeEeecCcHHHHHHHHhhhhhhccccccccccc---cc
Confidence 4457899999999998877776443221 11 2457899999854433221111 1110 11 1222 23
Q ss_pred cccc-cCC-CCceeEEEec--ccee-cccCCCCC--CCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCce
Q 037735 116 FYSS-LFP-KSSLHFVHSS--YTLH-WLSKVPKV--DGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGL 188 (329)
Q Consensus 116 Fy~~-lfp-~~s~dl~~Ss--~alh-WLs~~p~~--~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~ 188 (329)
.+.. ... ...+|+|+++ +... |-...... .|.++ ..... ..|+ .|+...-+-|++||+
T Consensus 114 ~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~--~~~~~------------~~~~-~Fi~~~l~~Lk~~G~ 178 (311)
T PF02384_consen 114 SLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKY--FPPKS------------NAEY-AFIEHALSLLKPGGR 178 (311)
T ss_dssp TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTC--SSSTT------------EHHH-HHHHHHHHTEEEEEE
T ss_pred cccccccccccccccccCCCCcccccccccccccccccccc--CCCcc------------chhh-hhHHHHHhhcccccc
Confidence 3333 333 5789999987 2222 41111000 02111 00011 1122 489999999999999
Q ss_pred EEEEec
Q 037735 189 AALVMF 194 (329)
Q Consensus 189 l~~~~~ 194 (329)
+++.++
T Consensus 179 ~~~Ilp 184 (311)
T PF02384_consen 179 AAIILP 184 (311)
T ss_dssp EEEEEE
T ss_pred eeEEec
Confidence 999886
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.82 E-value=1.5 Score=40.26 Aligned_cols=19 Identities=21% Similarity=0.125 Sum_probs=16.3
Q ss_pred ceEEEeeeCCCCcccHHHH
Q 037735 43 TFRIADFGCSTGPNTFIAV 61 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~ 61 (329)
-.+.||+|.|||.+|-.+.
T Consensus 83 G~s~LdvGsGSGYLt~~~~ 101 (237)
T KOG1661|consen 83 GASFLDVGSGSGYLTACFA 101 (237)
T ss_pred CcceeecCCCccHHHHHHH
Confidence 4778999999999997765
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.29 E-value=0.79 Score=43.20 Aligned_cols=52 Identities=17% Similarity=0.201 Sum_probs=39.8
Q ss_pred ceEEEeeeCCCCcccHHHHH------------HHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhh
Q 037735 43 TFRIADFGCSTGPNTFIAVQ------------NIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLF 98 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~------------~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf 98 (329)
.-+|+|+|+|.|.+|..+++ .++..++++.. ....++|+..|--.=||..++
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~----~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA----PYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc----cccceEEEeCchhcCcchhhc
Confidence 57899999999999999994 45566666543 134588999998888888643
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=87.86 E-value=0.2 Score=41.10 Aligned_cols=43 Identities=16% Similarity=0.295 Sum_probs=32.0
Q ss_pred eeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 126 LHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 126 ~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
+|+|.+.+..-|.. .... ..-+.+||+..++-|+|||.|++--
T Consensus 2 yDvilclSVtkWIH-------------Ln~G------------D~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 2 YDVILCLSVTKWIH-------------LNWG------------DEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp EEEEEEES-HHHHH-------------HHHH------------HHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred ccEEEEEEeeEEEE-------------ecCc------------CHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 68999999988942 2222 2346799999999999999999854
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=87.16 E-value=6.9 Score=38.45 Aligned_cols=129 Identities=18% Similarity=0.165 Sum_probs=79.3
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC--cc-eeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS--RS-YYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~--~~-~f~~gvpgsFy~ 118 (329)
...+|+|+=++-|.=|.++.... . .....|+.+|....=...+..++... .+ ..+..+ ++.+.
T Consensus 156 pge~VlD~cAAPGGKTthla~~~--------~-----~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d-~~~~~ 221 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELM--------E-----NEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKD-ARRLA 221 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhc--------C-----CCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecc-ccccc
Confidence 34899999999999999988633 1 11246799999887777776665321 22 122222 22223
Q ss_pred ccCCCC-ceeEEEeccceecccCCCCC-C--CCcc-ceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 119 SLFPKS-SLHFVHSSYTLHWLSKVPKV-D--GVEG-SIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 119 ~lfp~~-s~dl~~Ss~alhWLs~~p~~-~--~n~g-~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
...+.. .+|-|. =+.||+ . +.+. .+....++..+.+.-.-|. ++|..-.+-|+|||.|+-+|
T Consensus 222 ~~~~~~~~fD~iL--------lDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~-----~iL~~a~~~lk~GG~LVYST 288 (355)
T COG0144 222 ELLPGGEKFDRIL--------LDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQK-----EILAAALKLLKPGGVLVYST 288 (355)
T ss_pred ccccccCcCcEEE--------ECCCCCCCcccccCccccccCCHHHHHHHHHHHH-----HHHHHHHHhcCCCCEEEEEc
Confidence 333333 366663 467777 1 2111 2333334444544444453 78999999999999999999
Q ss_pred cccC
Q 037735 194 FSVP 197 (329)
Q Consensus 194 ~g~~ 197 (329)
....
T Consensus 289 CS~~ 292 (355)
T COG0144 289 CSLT 292 (355)
T ss_pred cCCc
Confidence 8754
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=87.08 E-value=1.2 Score=44.02 Aligned_cols=101 Identities=16% Similarity=0.206 Sum_probs=65.4
Q ss_pred eEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhh--hh-----cCCCCcceeeecccccc
Q 037735 44 FRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTL--FK-----SLPQSRSYYAAGVPGSF 116 (329)
Q Consensus 44 ~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~l--f~-----~l~~~~~~f~~gvpgsF 116 (329)
..++|+||+-|+-+...-. ++. .+++-.|. |.+.-. .. .+.. ..-++. +.|
T Consensus 112 ~~~~~~~~g~~~~~~~i~~---------f~~-------~~~~Gl~~--n~~e~~~~~~~~~~~~l~~-k~~~~~---~~~ 169 (364)
T KOG1269|consen 112 SKVLDVGTGVGGPSRYIAV---------FKK-------AGVVGLDN--NAYEAFRANELAKKAYLDN-KCNFVV---ADF 169 (364)
T ss_pred ccccccCcCcCchhHHHHH---------hcc-------CCccCCCc--CHHHHHHHHHHHHHHHhhh-hcceeh---hhh
Confidence 4789999999998877632 111 23444444 333221 11 1111 112333 468
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
-..+|+++.+|++.+.-+.+..++. ...+++-.++++|||+.+.--+.+
T Consensus 170 ~~~~fedn~fd~v~~ld~~~~~~~~-------------------------------~~~y~Ei~rv~kpGG~~i~~e~i~ 218 (364)
T KOG1269|consen 170 GKMPFEDNTFDGVRFLEVVCHAPDL-------------------------------EKVYAEIYRVLKPGGLFIVKEWIK 218 (364)
T ss_pred hcCCCCccccCcEEEEeecccCCcH-------------------------------HHHHHHHhcccCCCceEEeHHHHH
Confidence 7888999999999999998885532 355777788899999998877654
Q ss_pred C
Q 037735 197 P 197 (329)
Q Consensus 197 ~ 197 (329)
.
T Consensus 219 ~ 219 (364)
T KOG1269|consen 219 T 219 (364)
T ss_pred h
Confidence 3
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=86.69 E-value=0.36 Score=43.45 Aligned_cols=39 Identities=18% Similarity=0.176 Sum_probs=26.9
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHh
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNT 96 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~ 96 (329)
+..+|+|+|||||.+++...- + .| -.|+.-|+-......
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~---------l------Ga-~~V~~vdiD~~a~ei 83 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAAL---------L------GA-SRVLAVDIDPEALEI 83 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHh---------c------CC-cEEEEEecCHHHHHH
Confidence 445799999999999988752 1 23 268888876544333
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=84.65 E-value=2.3 Score=36.09 Aligned_cols=35 Identities=14% Similarity=0.105 Sum_probs=24.5
Q ss_pred CceEEEeeeCCCCc-ccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcch
Q 037735 42 NTFRIADFGCSTGP-NTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDND 93 (329)
Q Consensus 42 ~~~~IaDlGCstG~-nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~nd 93 (329)
+..+|+|+|||+|. .+..+.+ -...|+..|.-.+-
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~-----------------~G~~ViaIDi~~~a 51 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKE-----------------SGFDVIVIDINEKA 51 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHH-----------------CCCEEEEEECCHHH
Confidence 34789999999997 5555542 12578888886654
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.88 E-value=1.4 Score=41.13 Aligned_cols=55 Identities=20% Similarity=0.251 Sum_probs=40.9
Q ss_pred ccccccccc--CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceE
Q 037735 112 VPGSFYSSL--FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLA 189 (329)
Q Consensus 112 vpgsFy~~l--fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l 189 (329)
+.|+.|+-+ |+++|+|+++ .++|.- +- ..+.|.+ .|..+-+|.|+|||+|
T Consensus 190 ilGD~~e~V~~~~D~sfDaIi--------HDPPRf------------S~-AgeLYse-------efY~El~RiLkrgGrl 241 (287)
T COG2521 190 ILGDAYEVVKDFDDESFDAII--------HDPPRF------------SL-AGELYSE-------EFYRELYRILKRGGRL 241 (287)
T ss_pred ecccHHHHHhcCCccccceEe--------eCCCcc------------ch-hhhHhHH-------HHHHHHHHHcCcCCcE
Confidence 457888777 9999999986 467733 11 1267776 7889999999999999
Q ss_pred EEEec
Q 037735 190 ALVMF 194 (329)
Q Consensus 190 ~~~~~ 194 (329)
+=-+-
T Consensus 242 FHYvG 246 (287)
T COG2521 242 FHYVG 246 (287)
T ss_pred EEEeC
Confidence 76553
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=83.82 E-value=4.6 Score=35.90 Aligned_cols=108 Identities=17% Similarity=0.130 Sum_probs=65.5
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccc-----
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFY----- 117 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy----- 117 (329)
-.-|+|+|-|||..|..+++.- . .|+ .++.-.- +-||-.+.+.+.+..++ +- |+.+
T Consensus 49 glpVlElGPGTGV~TkaIL~~g--------v-----~~~-~L~~iE~-~~dF~~~L~~~~p~~~i-i~---gda~~l~~~ 109 (194)
T COG3963 49 GLPVLELGPGTGVITKAILSRG--------V-----RPE-SLTAIEY-SPDFVCHLNQLYPGVNI-IN---GDAFDLRTT 109 (194)
T ss_pred CCeeEEEcCCccHhHHHHHhcC--------C-----Ccc-ceEEEEe-CHHHHHHHHHhCCCccc-cc---cchhhHHHH
Confidence 3579999999999999988511 0 222 2332222 24777766655443332 22 2333
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
--.++..-+|.++|..-+ |+ .|. ...- +.|+.--.-|.+||.++.-+.|+-
T Consensus 110 l~e~~gq~~D~viS~lPl--l~-~P~---------------~~~i-----------aile~~~~rl~~gg~lvqftYgp~ 160 (194)
T COG3963 110 LGEHKGQFFDSVISGLPL--LN-FPM---------------HRRI-----------AILESLLYRLPAGGPLVQFTYGPL 160 (194)
T ss_pred HhhcCCCeeeeEEecccc--cc-CcH---------------HHHH-----------HHHHHHHHhcCCCCeEEEEEecCC
Confidence 223677788999886433 22 231 1111 456666777999999999999965
Q ss_pred C
Q 037735 198 D 198 (329)
Q Consensus 198 ~ 198 (329)
+
T Consensus 161 s 161 (194)
T COG3963 161 S 161 (194)
T ss_pred C
Confidence 4
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=83.23 E-value=3.3 Score=38.66 Aligned_cols=21 Identities=14% Similarity=0.118 Sum_probs=19.0
Q ss_pred CceEEEeeeCCCCcccHHHHH
Q 037735 42 NTFRIADFGCSTGPNTFIAVQ 62 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~ 62 (329)
+...|+|+|.|+|..|..+.+
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~ 50 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLK 50 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHH
T ss_pred CCCEEEEeCCCCccchhhHhc
Confidence 468899999999999999985
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=81.29 E-value=1.6 Score=43.05 Aligned_cols=37 Identities=11% Similarity=0.064 Sum_probs=27.3
Q ss_pred eEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhh
Q 037735 44 FRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTL 97 (329)
Q Consensus 44 ~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~l 97 (329)
.+|+|+|||+|..|+.+.+ + ..+|+.-|.........
T Consensus 235 ~~vLDL~cG~G~~~l~la~--------~---------~~~v~~vE~~~~av~~a 271 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAG--------P---------DTQLTGIEIESEAIACA 271 (374)
T ss_pred CEEEEccCCccHHHHHHhh--------c---------CCeEEEEECCHHHHHHH
Confidence 5899999999999988874 1 13688888875554433
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=80.86 E-value=3.7 Score=38.99 Aligned_cols=126 Identities=19% Similarity=0.159 Sum_probs=70.0
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC--cceeee-cccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS--RSYYAA-GVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~--~~~f~~-gvpgsFy~ 118 (329)
...+|+|+-+|.|.-|..+.+.+ ...-.++.+|...+-+..+-.++... .++-+. +..+.+ .
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~--------------~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~-~ 149 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELM--------------GNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKL-D 149 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHT--------------TTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHH-H
T ss_pred ccccccccccCCCCceeeeeecc--------------cchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccc-c
Confidence 34679999999999999887522 11358999999887777765543211 122111 221222 1
Q ss_pred ccCCCCceeEEEeccceecccCCCCC-C--CCcc-ceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHh----ccCceEE
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKV-D--GVEG-SIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQEL----VPGGLAA 190 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~-~--~n~g-~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL----~pGG~l~ 190 (329)
.-.+...+|.|. -++||+ . +.+. .+-...++..+.+.=.-| ...|..-++-+ +|||+|+
T Consensus 150 ~~~~~~~fd~Vl--------vDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q-----~~iL~~a~~~~~~~~k~gG~lv 216 (283)
T PF01189_consen 150 PKKPESKFDRVL--------VDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQ-----REILDNAAKLLNIDFKPGGRLV 216 (283)
T ss_dssp HHHHTTTEEEEE--------EECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHH-----HHHHHHHHHCEHHHBEEEEEEE
T ss_pred ccccccccchhh--------cCCCccchhhhhhccchhhcccccccchHHHHH-----HHHHHHHHHhhcccccCCCeEE
Confidence 112333466664 356666 1 1111 011111222222211222 36788888999 9999999
Q ss_pred EEecc
Q 037735 191 LVMFS 195 (329)
Q Consensus 191 ~~~~g 195 (329)
-+|..
T Consensus 217 YsTCS 221 (283)
T PF01189_consen 217 YSTCS 221 (283)
T ss_dssp EEESH
T ss_pred EEecc
Confidence 99965
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=80.82 E-value=7.6 Score=36.66 Aligned_cols=95 Identities=8% Similarity=-0.010 Sum_probs=58.8
Q ss_pred CCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC-------Ccceeeecc
Q 037735 40 VPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ-------SRSYYAAGV 112 (329)
Q Consensus 40 ~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~-------~~~~f~~gv 112 (329)
.++|.+||=+|=|.|...+.+++ -|+ +|.+.|+=...-...-+-+|. .+--.+.
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLk----------------h~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-- 130 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFK----------------YDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-- 130 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHC----------------cCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee--
Confidence 46789999999999998888874 233 788888865433332222432 1111110
Q ss_pred ccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEE
Q 037735 113 PGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALV 192 (329)
Q Consensus 113 pgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~ 192 (329)
++.. -+.+++|+|+.=++ +. ..|.+...+.|+|||.|+..
T Consensus 131 ---~~~~-~~~~~fDVIIvDs~-------~~-----------------------------~~fy~~~~~~L~~~Gi~v~Q 170 (262)
T PRK00536 131 ---QLLD-LDIKKYDLIICLQE-------PD-----------------------------IHKIDGLKRMLKEDGVFISV 170 (262)
T ss_pred ---hhhh-ccCCcCCEEEEcCC-------CC-----------------------------hHHHHHHHHhcCCCcEEEEC
Confidence 1111 12356777665532 21 27789999999999999886
Q ss_pred e
Q 037735 193 M 193 (329)
Q Consensus 193 ~ 193 (329)
.
T Consensus 171 s 171 (262)
T PRK00536 171 A 171 (262)
T ss_pred C
Confidence 4
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 329 | ||||
| 1m6e_X | 359 | Crystal Structure Of Salicylic Acid Carboxyl Methyl | 8e-46 | ||
| 2eg5_A | 372 | The Structure Of Xanthosine Methyltransferase Lengt | 8e-40 | ||
| 3b5i_A | 374 | Crystal Structure Of Indole-3-Acetic Acid Methyltra | 1e-38 | ||
| 2efj_A | 384 | The Structure Of 1,7 Dimethylxanthine Methyltransfe | 1e-37 |
| >pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl Methyltransferase (Samt) Length = 359 | Back alignment and structure |
|
| >pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid Methyltransferase Length = 374 | Back alignment and structure |
|
| >pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase Length = 384 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} Length = 374 | Back alignment and structure |
|---|
Score = 246 bits (628), Expect = 2e-79
Identities = 103/348 (29%), Positives = 158/348 (45%), Gaps = 39/348 (11%)
Query: 1 MVGGDGAHSYASNSAYQSIQVYILRYDPRTAVTDL--GTNAVPNTFRIADFGCSTGPNTF 58
M GG G SYA+NS Q++ + + + ++ ++A P F D GCS+G NT
Sbjct: 9 MKGGKGQDSYANNSLAQAMHARSMLHLLEETLENVHLNSSASPPPFTAVDLGCSSGANTV 68
Query: 59 IAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--------------- 103
+ I+ + +F EF FF+D NDFNTLF+ LP
Sbjct: 69 HIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADG 128
Query: 104 SRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPK-------VDGVEGSIQTRRF 156
+RSY+ AGVPGSFY LFP ++ F HS+++LHWLS+VP+ G +
Sbjct: 129 NRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGA 188
Query: 157 VNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAG-SFYNTFG 215
+ AY QF D FL RA E+ GG LV P AG F F
Sbjct: 189 GEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQ 248
Query: 216 SCLVELTKMGILSKEKM-------YNPTPKELEGIIQRNGNFTIERMEKMTNPKQQVLCS 268
+L + G+++ EK Y P+ ++ + ++ NG+F I+++ V+
Sbjct: 249 DAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAIDKLVVYKGGSPLVVNE 308
Query: 269 ASD-------LAVAMRAVYEGLVKEHFGDEFVDKIFNHFATKAEENIS 309
D A + R+V LV+ H G+E +K+F+ ++A +
Sbjct: 309 PDDASEVGRAFASSCRSVAGVLVEAHIGEELSNKLFSRVESRATSHAK 356
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 Length = 359 | Back alignment and structure |
|---|
Score = 235 bits (600), Expect = 1e-75
Identities = 114/353 (32%), Positives = 174/353 (49%), Gaps = 30/353 (8%)
Query: 1 MVGGDGAHSYASNSAYQSIQVYILRYDPRTAVTDLGTNAV-PNTFRIADFGCSTGPNTFI 59
M GG G +SYA NS Q + I + A+T L + IAD GCS+GPN
Sbjct: 9 MKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGCSSGPNALF 68
Query: 60 AVQNIIDSVELKFQ-HECPSAIEFQVFFNDHSDNDFNTLFKSLPQ----SRSYYAAGVPG 114
AV +I +VE + ++ E+Q+F ND NDFN +F+SLP + GVPG
Sbjct: 69 AVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPG 128
Query: 115 SFYSSLFPKSSLHFVHSSYTLHWLSKVPK-VDGVEGSIQ-TRRFVNEVMEAYAAQFNNDF 172
SFY LFP+++LHF+HSSY+L WLS+VP ++ +G+I V+ AY QF D
Sbjct: 129 SFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDH 188
Query: 173 QTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKM 232
FL RAQE+VPGG L + + + L ++ G++ +EKM
Sbjct: 189 ALFLRCRAQEVVPGGRMVLTILGRRSEDR-ASTECCLIWQLLAMALNQMVSEGLIEEEKM 247
Query: 233 -------YNPTPKELEGIIQRNGNFTIERMEKMT----------NPKQQVLCSASDLAVA 275
Y P+P E+E I + G+F I+ +E + V ++A
Sbjct: 248 DKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCTKDGDGGGSVEEEGYNVARC 307
Query: 276 MRAVYEGLVKEHFGDEFVDKIFNHFATKAEENISIIGQRVQDSMMDLFILLKR 328
MRAV E L+ +HFG+ ++ +F+ + E +S + + +++ + L R
Sbjct: 308 MRAVAEPLLLDHFGEAIIEDVFHRYKLLIIERMS----KEKTKFINVIVSLIR 356
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* Length = 384 | Back alignment and structure |
|---|
Score = 224 bits (571), Expect = 6e-71
Identities = 105/381 (27%), Positives = 168/381 (44%), Gaps = 65/381 (17%)
Query: 1 MVGGDGAHSYASNSAYQSIQVYILRYDP--RTAVTDLGTNAVP---NTFRIADFGCSTGP 55
M GG+G SYA NS+Y ++R P + +L +P F++ D GC++GP
Sbjct: 9 MNGGEGDTSYAKNSSYNLF---LIRVKPVLEQCIQELLRANLPNINKCFKVGDLGCASGP 65
Query: 56 NTFIAVQNIIDSVELKFQHECPSA--IEFQVFFNDHSDNDFNTLFKSLPQ---------- 103
NTF V++I+ S++ Q + Q+F ND NDFN++FK LP
Sbjct: 66 NTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENG 125
Query: 104 --SRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPK-------VDGVEGSIQTR 154
S +PGSFYS LFP+ S+HF+HS Y LHWLS+VP + +G I +
Sbjct: 126 RKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSS 185
Query: 155 RFVN-EVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNT 213
+ + +AY QF DF TFL ++EL+ G L D N +
Sbjct: 186 KASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKEDEFDHPN-----SMDL 240
Query: 214 FGSCLVELTKMGILSKEKM-------YNPTPKELEGIIQRNGNFTIERMEKMTNPKQQVL 266
+ +L G L +EK+ Y P+ +E++ I++ G+F I +E P
Sbjct: 241 LEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLETFNAPYDAGF 300
Query: 267 C-------------------SASDLAVAMRAVYEGLVKEHFGDEFVDKIFNHFATKAEEN 307
A+ +A +R++YE ++ HFG+ + + + A A +
Sbjct: 301 SIDDDYQGRSHSPVSCDEHARAAHVASVVRSIYEPILASHFGEAILPDLSHRIAKNAAKV 360
Query: 308 ISIIGQRVQDSMMDLFILLKR 328
+ + + I L +
Sbjct: 361 LR----SGKGFYDSVIISLAK 377
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 1e-06
Identities = 48/379 (12%), Positives = 86/379 (22%), Gaps = 135/379 (35%)
Query: 27 DPRTAVTDLGTNAVPNTFR---IADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQ 83
D T + + F + +F C + ++I+ E+ A+
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQD---MPKSILSKEEIDHIIMSKDAVS-G 63
Query: 84 VFFNDHSDNDFNTLFKSL--PQSRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKV 141
LF +L Q F + L +Y +L
Sbjct: 64 TLR----------LFWTLLSKQEEMVQK-----------FVEEVLR---INYK--FLMSP 97
Query: 142 PKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTF-------------LNTRAQELVP--- 185
K + + S+ TR ++ + Y ND Q F L EL P
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLY-----NDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 186 ------GG-----LAALVMFSV------PDGIPLVNNAAGSFYNTFGSC----------- 217
G +A V S I F+ +C
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI---------FWLNLKNCNSPETVLEMLQ 203
Query: 218 --LVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMT--------NPKQ---- 263
L ++ + N + I + + N K
Sbjct: 204 KLLYQIDPNWTSRSDHSSNI-KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262
Query: 264 ----QVLCSASDLAVAMRAVYEGLVKEHFGDEFVDKIFNH------FATKAEEN------ 307
++L + V H + +
Sbjct: 263 NLSCKILLTTRFKQVT--DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 308 ---------ISIIGQRVQD 317
+SII + ++D
Sbjct: 321 EVLTTNPRRLSIIAESIRD 339
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 329 | |||
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 100.0 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 100.0 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 100.0 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.7 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.7 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.64 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.55 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.49 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.48 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.45 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.44 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.44 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.43 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.43 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.42 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.4 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.4 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.4 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.4 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.38 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.37 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.36 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.35 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.34 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.32 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.31 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.31 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.3 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.3 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.3 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.3 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.28 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.26 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.26 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.25 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.24 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.23 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.23 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.21 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.21 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.2 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.2 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.2 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.19 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.19 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.19 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.18 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.17 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.16 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.15 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.15 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.15 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.14 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.13 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.13 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.11 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.1 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.1 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.1 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.09 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.07 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.07 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.07 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.06 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.06 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.06 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.06 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.05 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.04 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.03 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.03 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.02 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.02 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.0 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.0 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 98.98 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 98.97 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 98.96 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 98.95 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 98.94 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 98.94 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 98.93 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 98.93 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 98.92 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 98.91 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 98.91 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 98.91 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 98.9 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 98.9 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 98.89 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 98.88 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 98.88 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 98.87 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 98.87 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.86 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 98.85 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 98.84 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 98.81 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 98.8 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 98.76 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.76 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 98.75 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 98.75 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 98.73 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 98.73 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 98.72 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 98.71 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 98.7 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 98.69 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 98.66 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 98.65 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 98.62 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 98.61 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 98.6 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 98.59 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 98.58 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 98.57 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 98.57 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 98.57 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 98.56 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 98.55 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 98.55 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 98.54 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.53 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 98.52 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 98.51 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 98.51 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 98.49 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 98.48 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 98.46 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 98.45 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 98.45 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 98.44 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 98.44 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 98.43 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 98.43 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 98.42 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 98.39 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 98.36 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 98.36 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 98.34 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 98.34 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 98.33 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 98.33 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 98.33 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 98.31 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.31 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 98.31 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 98.3 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 98.3 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 98.3 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.3 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 98.29 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 98.29 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 98.28 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 98.28 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.28 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 98.27 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 98.27 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 98.27 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.26 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 98.25 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 98.25 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 98.25 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 98.24 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 98.24 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 98.23 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 98.22 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.22 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 98.21 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 98.2 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 98.2 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 98.19 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.19 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 98.18 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 98.17 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 98.17 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.16 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.15 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 98.15 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 98.14 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 98.14 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.13 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 98.13 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 98.12 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 98.11 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.11 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.11 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.09 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.09 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.08 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 98.07 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.06 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 98.06 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.05 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 98.04 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.04 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 98.03 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.02 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 98.02 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.02 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.01 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.0 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 98.0 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 97.98 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 97.98 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 97.98 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 97.97 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 97.96 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 97.94 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 97.94 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 97.93 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 97.93 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 97.93 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 97.92 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 97.89 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 97.88 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 97.87 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 97.86 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 97.82 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 97.81 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 97.79 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 97.78 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 97.77 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 97.77 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 97.75 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 97.75 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 97.71 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 97.68 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 97.61 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 97.57 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 97.56 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 97.56 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 97.54 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 97.51 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 97.5 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 97.41 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 97.39 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 97.38 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 97.26 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 97.24 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 97.18 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 97.14 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 97.13 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 97.12 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 97.09 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 97.09 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 97.08 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 97.02 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 97.01 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 96.99 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 96.95 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 96.93 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 96.93 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 96.9 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 96.87 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 96.86 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 96.72 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 96.65 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 96.65 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 96.53 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 96.48 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 96.23 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 96.13 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 96.12 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 96.03 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 95.9 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 95.9 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 95.87 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 95.85 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 95.83 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 95.62 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 95.5 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 95.49 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 95.47 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 95.46 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 95.39 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 94.93 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 94.32 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 92.24 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 91.47 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 90.47 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 89.82 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 89.53 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 89.38 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 88.78 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 86.58 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 85.94 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 85.19 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 84.59 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 84.42 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 81.53 |
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-86 Score=644.12 Aligned_cols=324 Identities=35% Similarity=0.592 Sum_probs=295.5
Q ss_pred CCCCCCCcchHHHhHHHHHHHHHhHhhHHHHHhhcccCC-CCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCC-C
Q 037735 1 MVGGDGAHSYASNSAYQSIQVYILRYDPRTAVTDLGTNA-VPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECP-S 78 (329)
Q Consensus 1 m~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~i~~~~-~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~-~ 78 (329)
|+||+|++||++||.+|++++..++|++++||.++.... .+++++|||||||+|+||+.+++.||++|+++|.+.+. +
T Consensus 9 m~gg~G~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~ 88 (359)
T 1m6e_X 9 MKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGREN 88 (359)
T ss_dssp CCCCTTSTTTTSSCHHHHHHHHHTHHHHHHHHHHHHSSSSSSSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSS
T ss_pred cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999999999876543 56789999999999999999999999999999977654 6
Q ss_pred CccceEEecCCCcchHHhhhhcCCCC----cceeeeccccccccccCCCCceeEEEeccceecccCCCCC-CCCccceee
Q 037735 79 AIEFQVFFNDHSDNDFNTLFKSLPQS----RSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKV-DGVEGSIQT 153 (329)
Q Consensus 79 ~pe~~v~~nDLp~ndfn~lf~~l~~~----~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~-~~n~g~i~~ 153 (329)
.||+|||+||||.||||++|++|+.. ++||++|||||||+||||++|+|++||++||||||++|+. .-|||+||+
T Consensus 89 ~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~ 168 (359)
T 1m6e_X 89 SPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYM 168 (359)
T ss_dssp CCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSS
T ss_pred CCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEe
Confidence 88999999999999999999999852 5799999999999999999999999999999999999988 349999999
Q ss_pred cC-CcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCc-
Q 037735 154 RR-FVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEK- 231 (329)
Q Consensus 154 ~~-~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~- 231 (329)
++ +|++|.+||++||++||..||++|++||+|||+|+++++|+++..+.++ +.+.+|+.|.++|++|+.+|+|++++
T Consensus 169 ~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~-~~~~~~~~l~~al~~mv~eGli~~ek~ 247 (359)
T 1m6e_X 169 ANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRAST-ECCLIWQLLAMALNQMVSEGLIEEEKM 247 (359)
T ss_dssp CSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEECSSSSSSST-TTSTTTHHHHHHHHHHHHTTCSCCSTT
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEecCCCCCcccc-chHHHHHHHHHHHHHHHHccccchhhh
Confidence 86 5677999999999999999999999999999999999999999876644 46678999999999999999999987
Q ss_pred ------ccCCCHHHHHHHHHhCCceEEeEEEEeecCcccc----------cccHHHHhhhHhhhhhhHHhhhcChHHHHH
Q 037735 232 ------MYNPTPKELEGIIQRNGNFTIERMEKMTNPKQQV----------LCSASDLAVAMRAVYEGLVKEHFGDEFVDK 295 (329)
Q Consensus 232 ------~y~ps~eE~~~~i~~~g~f~i~~~e~~~~~~~~~----------~~~~~~~~~~iRa~~e~~~~~~~g~~~~d~ 295 (329)
+|+||++|++++|+++|+|+|+++|.++..|... ...++.+++++||+.+|++.+|||++++|+
T Consensus 248 d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e~~~~~~~~~~~~~d~~~~~~~~g~~~a~~~Ra~~e~ll~~hfG~~i~d~ 327 (359)
T 1m6e_X 248 DKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCTKDGDGGGSVEEEGYNVARCMRAVAEPLLLDHFGEAIIED 327 (359)
T ss_dssp GGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEEEEETTCCSSCTTCCSSTTTTTTHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred hccCCCccCCCHHHHHHHHHHcCCceEEEEEEEeeccCcccchhhhhhhhhHhHhHhhhhhhhhcchhhHHhccHHHHHH
Confidence 9999999999999999999999999887665421 124678999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhcCCCceEEEEEEEeC
Q 037735 296 IFNHFATKAEENISIIGQRVQDSMMDLFILLKRI 329 (329)
Q Consensus 296 ~f~ry~~~~~~~~~~~~~~~~~~~~~~~~~L~r~ 329 (329)
+|+||++++++++.. ...++++++++|+|+
T Consensus 328 lf~ry~~~~~~~~~~----~~~~~~~~~~~L~k~ 357 (359)
T 1m6e_X 328 VFHRYKLLIIERMSK----EKTKFINVIVSLIRK 357 (359)
T ss_dssp HHHHHHHHHHHHHHS----SCCEEEEEEEEEEBC
T ss_pred HHHHHHHHHHHHHhh----CCCceEEEEEEEEeC
Confidence 999999999998873 456689999999996
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-84 Score=631.43 Aligned_cols=317 Identities=32% Similarity=0.574 Sum_probs=277.0
Q ss_pred CCCCCCCcchHHHhHHHHHHHHHhHhhHHHHHhhcccCCCCC---ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhh--c
Q 037735 1 MVGGDGAHSYASNSAYQSIQVYILRYDPRTAVTDLGTNAVPN---TFRIADFGCSTGPNTFIAVQNIIDSVELKFQH--E 75 (329)
Q Consensus 1 m~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~~---~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~--~ 75 (329)
|+||+|++||++||. |++++..++|++++||+.+.....++ +++|||||||+|+||+.+++.||++|+++|.+ .
T Consensus 9 M~gg~G~~sY~~nS~-Q~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~ 87 (384)
T 2efj_A 9 MNGGEGDTSYAKNSS-YNLFLIRVKPVLEQCIQELLRANLPNINKCFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKN 87 (384)
T ss_dssp CCC----CCHHHHCC-TTTTHHHHHHHHHHHHHHHHHTTCTTTTTEEEEEEETCCSSHHHHHHHHHHHHHHTCC------
T ss_pred cCCCCChhhHHHhHH-HHHHHHHHHHHHHHHHHHhhhcccCCcCCceEEEecCCCCCchHHHHHHHHHHHHHHHhhhccc
Confidence 999999999999999 99999999999999999776543344 89999999999999999999999999999865 3
Q ss_pred CCCCccceEEecCCCcchHHhhhhcCCC------------CcceeeeccccccccccCCCCceeEEEeccceecccCCCC
Q 037735 76 CPSAIEFQVFFNDHSDNDFNTLFKSLPQ------------SRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPK 143 (329)
Q Consensus 76 ~~~~pe~~v~~nDLp~ndfn~lf~~l~~------------~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~ 143 (329)
+.+.||+|||+||||.||||+||++||. .++||++|||||||+||||++|+|++||++||||||++|+
T Consensus 88 ~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~ 167 (384)
T 2efj_A 88 ELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPS 167 (384)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCC
T ss_pred CCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceEEEecchhhhhccCCCCceEEEEecceeeecCCCch
Confidence 4457899999999999999999999974 2479999999999999999999999999999999999997
Q ss_pred C--C-----CCccceeecC-CcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCC--CcccCCcccchHHH
Q 037735 144 V--D-----GVEGSIQTRR-FVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDG--IPLVNNAAGSFYNT 213 (329)
Q Consensus 144 ~--~-----~n~g~i~~~~-~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~--~~~~~~~~~~~~~~ 213 (329)
. + ||||+||+++ +||+|.++|++||++||..||++|++||+|||+|+++++|+++. .+.+ .++
T Consensus 168 ~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra~eL~pGG~mvl~~~gr~~~~~~~~~-------~~~ 240 (384)
T 2efj_A 168 GLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICKEDEFDHPNS-------MDL 240 (384)
T ss_dssp C------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECCCTTTCCCCH-------HHH
T ss_pred hhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCCcccCccc-------HHH
Confidence 7 3 8999999985 67889999999999999999999999999999999999999987 5432 138
Q ss_pred HHHHHHHHHhcCCcCCCc-------ccCCCHHHHHHHHHhCCceEEeEEEEeecCcccc----c---------------c
Q 037735 214 FGSCLVELTKMGILSKEK-------MYNPTPKELEGIIQRNGNFTIERMEKMTNPKQQV----L---------------C 267 (329)
Q Consensus 214 l~~a~~~l~~eG~i~~~~-------~y~ps~eE~~~~i~~~g~f~i~~~e~~~~~~~~~----~---------------~ 267 (329)
+.++|++|+.+|+|++++ +|+||++|++++|+++|+|+|.++|.++..|... . .
T Consensus 241 l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 320 (384)
T 2efj_A 241 LEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLETFNAPYDAGFSIDDDYQGRSHSPVSCDEHA 320 (384)
T ss_dssp HHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEEEEEEETTTTCCC---------CCSHHHHHH
T ss_pred HHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEEEEeecccccccccccccccccccccchHhH
Confidence 999999999999999996 9999999999999999999999999987665421 1 1
Q ss_pred cHHHHhhhHhhhhhhHHhhhcChHHHHHHHHHHHHHHHHhhhhhhhhcCCCceEEEEEEEeC
Q 037735 268 SASDLAVAMRAVYEGLVKEHFGDEFVDKIFNHFATKAEENISIIGQRVQDSMMDLFILLKRI 329 (329)
Q Consensus 268 ~~~~~~~~iRa~~e~~~~~~~g~~~~d~~f~ry~~~~~~~~~~~~~~~~~~~~~~~~~L~r~ 329 (329)
.++.+++++||+++|++.+|||++++|++|+||+++++++++. ...++++++++|+|+
T Consensus 321 ~g~~~a~~iRa~~epll~~hfG~~i~d~lF~ry~~~~~~~~~~----~~~~~~~~~~~L~k~ 378 (384)
T 2efj_A 321 RAAHVASVVRSIYEPILASHFGEAILPDLSHRIAKNAAKVLRS----GKGFYDSVIISLAKK 378 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHHHHHH----TCCEEEEEEEEEEEC
T ss_pred hHHHhhhhhHHhhhhhhHHhccHHHHHHHHHHHHHHHHHHHhh----CCCceEEEEEEEEEc
Confidence 3578999999999999999999999999999999999998874 356789999999996
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-83 Score=624.82 Aligned_cols=325 Identities=31% Similarity=0.553 Sum_probs=278.2
Q ss_pred CCCCCCCcchHHHhHHHHHHHHHhHhhHHHHHhhcccCC--CCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCC
Q 037735 1 MVGGDGAHSYASNSAYQSIQVYILRYDPRTAVTDLGTNA--VPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPS 78 (329)
Q Consensus 1 m~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~i~~~~--~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~ 78 (329)
|+||+|+.||++||.+|++++..++|+++++|+.+.... .+++++|||||||+|+||+.+++.||++|+++|.+.+.+
T Consensus 9 m~gg~g~~sY~~nS~~Q~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~ 88 (374)
T 3b5i_A 9 MKGGKGQDSYANNSLAQAMHARSMLHLLEETLENVHLNSSASPPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGID 88 (374)
T ss_dssp -----------------CTTHHHHHHHHHHHHHTSCCCCSSSCCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCcchHHHhhHHHHHHHHHHHHHHHHHHHHhhccccCCCCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999999999999999999876543 356899999999999999999999999999999877767
Q ss_pred CccceEEecCCCcchHHhhhhcCCCC---------------cceeeeccccccccccCCCCceeEEEeccceecccCCCC
Q 037735 79 AIEFQVFFNDHSDNDFNTLFKSLPQS---------------RSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPK 143 (329)
Q Consensus 79 ~pe~~v~~nDLp~ndfn~lf~~l~~~---------------~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~ 143 (329)
+||+||++||||.||||+||++|+.. ++||++|||||||+||||++|+|+|||++||||||++|+
T Consensus 89 ~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~ 168 (374)
T 3b5i_A 89 PPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPE 168 (374)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCG
T ss_pred CCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCceEEEecChhhhcccCCCcceEEEEecceeeeeccCch
Confidence 89999999999999999999999863 359999999999999999999999999999999999997
Q ss_pred C--C-----CCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCCcccCCcccchH-HHHH
Q 037735 144 V--D-----GVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFY-NTFG 215 (329)
Q Consensus 144 ~--~-----~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~-~~l~ 215 (329)
. + ||||+||+++++|+|.+||++||++||..||++|++||+|||+|+++++|+++..+.++.+.+.+| +.|.
T Consensus 169 ~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~ 248 (374)
T 3b5i_A 169 SVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQ 248 (374)
T ss_dssp GGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHH
T ss_pred hhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCCccccccchhhHHHHHHH
Confidence 6 3 899999999888889999999999999999999999999999999999999998776666667788 9999
Q ss_pred HHHHHHHhcCCcCCCc-------ccCCCHHHHHHHHHhCCceEEeEEEEeecCcc---cc----cccHHHHhhhHhhhhh
Q 037735 216 SCLVELTKMGILSKEK-------MYNPTPKELEGIIQRNGNFTIERMEKMTNPKQ---QV----LCSASDLAVAMRAVYE 281 (329)
Q Consensus 216 ~a~~~l~~eG~i~~~~-------~y~ps~eE~~~~i~~~g~f~i~~~e~~~~~~~---~~----~~~~~~~~~~iRa~~e 281 (329)
++|++|+.+|+|++++ +|+||++|++++|+++|+|+|++++.++.+|. +. ...++.+++++||+.+
T Consensus 249 ~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~I~~le~~~~~~~~~~~~~~~~~~~g~~~a~~~Ra~~e 328 (374)
T 3b5i_A 249 DAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAIDKLVVYKGGSPLVVNEPDDASEVGRAFASSCRSVAG 328 (374)
T ss_dssp HHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEEEEEEEEEECCCCCCCSSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCCcEEEEEEEEeecCCccccccchhHHHHHHHHHHHHHhcc
Confidence 9999999999999985 99999999999999888999999999876542 11 1136889999999999
Q ss_pred hHHhhhcChHHHHHHHHHHHHHHHHhhhhhhhhcCCC--ceEEEEEEE
Q 037735 282 GLVKEHFGDEFVDKIFNHFATKAEENISIIGQRVQDS--MMDLFILLK 327 (329)
Q Consensus 282 ~~~~~~~g~~~~d~~f~ry~~~~~~~~~~~~~~~~~~--~~~~~~~L~ 327 (329)
|++.+|||++++|++|+||+++++++++.+ .+..+ .++++++|+
T Consensus 329 ~ll~~hfg~~i~d~lf~ry~~~~~~~~~~~--~~~~~~~~~~~~~~l~ 374 (374)
T 3b5i_A 329 VLVEAHIGEELSNKLFSRVESRATSHAKDV--LVNLQFFHIVASLSFT 374 (374)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHHHTCHHH--HTTCCCEEEEEEEEEC
T ss_pred chhHhhccHHHHHHHHHHHHHHHHHhHHHh--hhccccceEEEEEEeC
Confidence 999999999999999999999999999876 34555 688888885
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-16 Score=144.47 Aligned_cols=223 Identities=13% Similarity=0.169 Sum_probs=150.4
Q ss_pred CcchHHHhHHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEe
Q 037735 7 AHSYASNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFF 86 (329)
Q Consensus 7 ~~sY~~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~ 86 (329)
+..|++.+..|.+.+..++..+. ..+..+|+|+|||+|..+..+.... |..+++.
T Consensus 8 ~~~y~~~~~~~~~~~~~l~~~~~----------~~~~~~vLdiG~G~G~~~~~l~~~~---------------~~~~v~~ 62 (259)
T 2p35_A 8 AQQYLKFEDERTRPARDLLAQVP----------LERVLNGYDLGCGPGNSTELLTDRY---------------GVNVITG 62 (259)
T ss_dssp CGGGBCCCCGGGHHHHHHHTTCC----------CSCCSSEEEETCTTTHHHHHHHHHH---------------CTTSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC----------CCCCCEEEEecCcCCHHHHHHHHhC---------------CCCEEEE
Confidence 46788888888877765544332 2345799999999999998887521 2358999
Q ss_pred cCCCcchHHhhhhcCCCCcceeeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHH
Q 037735 87 NDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAA 166 (329)
Q Consensus 87 nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~ 166 (329)
.|+...+....-+..+. ..|..+ ++.+-. |++++|+|+|+.++||+.+
T Consensus 63 ~D~s~~~~~~a~~~~~~--~~~~~~---d~~~~~-~~~~fD~v~~~~~l~~~~~-------------------------- 110 (259)
T 2p35_A 63 IDSDDDMLEKAADRLPN--TNFGKA---DLATWK-PAQKADLLYANAVFQWVPD-------------------------- 110 (259)
T ss_dssp EESCHHHHHHHHHHSTT--SEEEEC---CTTTCC-CSSCEEEEEEESCGGGSTT--------------------------
T ss_pred EECCHHHHHHHHHhCCC--cEEEEC---ChhhcC-ccCCcCEEEEeCchhhCCC--------------------------
Confidence 99988777666554332 234443 554433 8899999999999999743
Q ss_pred HHhhcHHHHHHHHHHHhccCceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCc----CC---CcccCCCHHH
Q 037735 167 QFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGIL----SK---EKMYNPTPKE 239 (329)
Q Consensus 167 q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i----~~---~~~y~ps~eE 239 (329)
...+|+..++.|+|||+|++++++..+. + .. ..+.++...+.. .. ....+++.++
T Consensus 111 -----~~~~l~~~~~~L~pgG~l~~~~~~~~~~-~--------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (259)
T 2p35_A 111 -----HLAVLSQLMDQLESGGVLAVQMPDNLQE-P--------TH----IAMHETADGGPWKDAFSGGGLRRKPLPPPSD 172 (259)
T ss_dssp -----HHHHHHHHGGGEEEEEEEEEEEECCTTS-H--------HH----HHHHHHHHHSTTGGGC-------CCCCCHHH
T ss_pred -----HHHHHHHHHHhcCCCeEEEEEeCCCCCc-H--------HH----HHHHHHhcCcchHHHhccccccccCCCCHHH
Confidence 3478999999999999999999764321 0 11 112222221100 00 0156789999
Q ss_pred HHHHHHhCCceEEeEEEEeecCcccccccHHHHhhhHhhhhhhHHhhhcChHHHHHHHHHHHHHHHHhh
Q 037735 240 LEGIIQRNGNFTIERMEKMTNPKQQVLCSASDLAVAMRAVYEGLVKEHFGDEFVDKIFNHFATKAEENI 308 (329)
Q Consensus 240 ~~~~i~~~g~f~i~~~e~~~~~~~~~~~~~~~~~~~iRa~~e~~~~~~~g~~~~d~~f~ry~~~~~~~~ 308 (329)
+.+++++. +|++...+......+. +++.+..++++++...+...++++..++|.+++.+.+.++.
T Consensus 173 ~~~~l~~a-Gf~v~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (259)
T 2p35_A 173 YFNALSPK-SSRVDVWHTVYNHPMK---DADSIVEWVKGTGLRPYLAAAGEENREAFLADYTRRIAAAY 237 (259)
T ss_dssp HHHHHGGG-EEEEEEEEEEEEEEES---CHHHHHHHHTTTTTTHHHHTTCGGGHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhc-CCceEEEEEEeeeccC---CchHHhhhhhcCcchHHHHhCCHHHHHHHHHHHHHHHHHhC
Confidence 99999988 5987655543211222 47888899998654333346888888999888988887654
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.70 E-value=3e-16 Score=144.75 Aligned_cols=222 Identities=16% Similarity=0.168 Sum_probs=145.2
Q ss_pred CcchHHHhHHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEe
Q 037735 7 AHSYASNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFF 86 (329)
Q Consensus 7 ~~sY~~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~ 86 (329)
+..|++++..|......+...+. ..+..+|+|+|||+|..+..+.. +..+|+.
T Consensus 32 a~~y~~~~~~~~~~~~~l~~~l~----------~~~~~~vLDiGcG~G~~~~~l~~-----------------~~~~v~g 84 (279)
T 3ccf_A 32 ATLYQDKHSFVWQYGEDLLQLLN----------PQPGEFILDLGCGTGQLTEKIAQ-----------------SGAEVLG 84 (279)
T ss_dssp ---------CCSSSCCHHHHHHC----------CCTTCEEEEETCTTSHHHHHHHH-----------------TTCEEEE
T ss_pred HHHHhhcchHHHHHHHHHHHHhC----------CCCCCEEEEecCCCCHHHHHHHh-----------------CCCeEEE
Confidence 45677776666555444443332 23457999999999999988863 2258999
Q ss_pred cCCCcchHHhhhhcCCCCcceeeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHH
Q 037735 87 NDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAA 166 (329)
Q Consensus 87 nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~ 166 (329)
.|+...+....-+.++. ..|..+ ++.. +.+++++|+|+|+.++||+.+
T Consensus 85 vD~s~~~~~~a~~~~~~--~~~~~~---d~~~-~~~~~~fD~v~~~~~l~~~~d-------------------------- 132 (279)
T 3ccf_A 85 TDNAATMIEKARQNYPH--LHFDVA---DARN-FRVDKPLDAVFSNAMLHWVKE-------------------------- 132 (279)
T ss_dssp EESCHHHHHHHHHHCTT--SCEEEC---CTTT-CCCSSCEEEEEEESCGGGCSC--------------------------
T ss_pred EECCHHHHHHHHhhCCC--CEEEEC---Chhh-CCcCCCcCEEEEcchhhhCcC--------------------------
Confidence 99988777665554432 234443 4533 434689999999999999754
Q ss_pred HHhhcHHHHHHHHHHHhccCceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCc-CCCc--ccCCCHHHHHHH
Q 037735 167 QFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGIL-SKEK--MYNPTPKELEGI 243 (329)
Q Consensus 167 q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i-~~~~--~y~ps~eE~~~~ 243 (329)
...+|+..++.|+|||++++.+++.++.. .+.+.+...+... |.- .... .++++.+++.++
T Consensus 133 -----~~~~l~~~~~~LkpgG~l~~~~~~~~~~~--------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 196 (279)
T 3ccf_A 133 -----PEAAIASIHQALKSGGRFVAEFGGKGNIK--------YILEALYNALETL---GIHNPQALNPWYFPSIGEYVNI 196 (279)
T ss_dssp -----HHHHHHHHHHHEEEEEEEEEEEECTTTTH--------HHHHHHHHHHHHH---TCCCGGGGCCCCCCCHHHHHHH
T ss_pred -----HHHHHHHHHHhcCCCcEEEEEecCCcchH--------HHHHHHHHHHHhc---CCccccCcCceeCCCHHHHHHH
Confidence 34789999999999999999998765421 1233333333332 321 1111 577899999999
Q ss_pred HHhCCceEEeEEEEeecC-cccccccHHHHhhhHhhhhhhHHhhhcChHHHHHHHHHHHHHHHHh
Q 037735 244 IQRNGNFTIERMEKMTNP-KQQVLCSASDLAVAMRAVYEGLVKEHFGDEFVDKIFNHFATKAEEN 307 (329)
Q Consensus 244 i~~~g~f~i~~~e~~~~~-~~~~~~~~~~~~~~iRa~~e~~~~~~~g~~~~d~~f~ry~~~~~~~ 307 (329)
+++.| |+++.++....+ .+. .+++.+..+++++..+.+. .++++..+++.+++.+.+...
T Consensus 197 l~~aG-f~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 257 (279)
T 3ccf_A 197 LEKQG-FDVTYAALFNRPTTLA--EGEFGMANWIQMFASAFLV-GLTPDQQVQLIRKVEATLQDK 257 (279)
T ss_dssp HHHHT-EEEEEEEEEECCEECS--SGGGHHHHHHHHHCHHHHT-TCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHcC-CEEEEEEEeccccccc--CCHHHHHHHHHHhhHHHhc-cCCHHHHHHHHHHHHHHHHhh
Confidence 99985 999988876544 222 1356677888877665554 478888888888888877664
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-15 Score=136.76 Aligned_cols=251 Identities=13% Similarity=0.108 Sum_probs=155.0
Q ss_pred cchHHHhHHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEec
Q 037735 8 HSYASNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFN 87 (329)
Q Consensus 8 ~sY~~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~n 87 (329)
..|++....+......+...+.+.... ..+..+|+|+|||+|..+..+.. . ..+++..
T Consensus 10 ~~y~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~vLDiG~G~G~~~~~l~~--------~---------~~~v~~v 67 (263)
T 2yqz_A 10 YAYDRLRAHPPEVAGQIATAMASAVHP-----KGEEPVFLELGVGTGRIALPLIA--------R---------GYRYIAL 67 (263)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHCCC-----SSSCCEEEEETCTTSTTHHHHHT--------T---------TCEEEEE
T ss_pred HHHhhhcccChHHHHHHHHHHHHhhcC-----CCCCCEEEEeCCcCCHHHHHHHH--------C---------CCEEEEE
Confidence 356665555555555555444321111 23457999999999999988864 1 1479999
Q ss_pred CCCcchHHhhhhcCCC--CcceeeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHH
Q 037735 88 DHSDNDFNTLFKSLPQ--SRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYA 165 (329)
Q Consensus 88 DLp~ndfn~lf~~l~~--~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~ 165 (329)
|+..++....-+.+.. .+..|..+ ++..-.+|++++|+|+++.++||+.+.
T Consensus 68 D~s~~~~~~a~~~~~~~~~~~~~~~~---d~~~~~~~~~~fD~v~~~~~l~~~~~~------------------------ 120 (263)
T 2yqz_A 68 DADAAMLEVFRQKIAGVDRKVQVVQA---DARAIPLPDESVHGVIVVHLWHLVPDW------------------------ 120 (263)
T ss_dssp ESCHHHHHHHHHHTTTSCTTEEEEES---CTTSCCSCTTCEEEEEEESCGGGCTTH------------------------
T ss_pred ECCHHHHHHHHHHhhccCCceEEEEc---ccccCCCCCCCeeEEEECCchhhcCCH------------------------
Confidence 9988777666555411 12234443 565545789999999999999997543
Q ss_pred HHHhhcHHHHHHHHHHHhccCceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHH
Q 037735 166 AQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQ 245 (329)
Q Consensus 166 ~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~ 245 (329)
..+|+..++.|+|||++++.....+. .. ...+.+.+...+..+ |.-.....++.+.+++.+.++
T Consensus 121 -------~~~l~~~~~~L~pgG~l~~~~~~~~~-~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~ 184 (263)
T 2yqz_A 121 -------PKVLAEAIRVLKPGGALLEGWDQAEA-SP-----EWTLQERWRAFAAEE---GFPVERGLHAKRLKEVEEALR 184 (263)
T ss_dssp -------HHHHHHHHHHEEEEEEEEEEEEEECC-CH-----HHHHHHHHHHHHHHH---TCCCCCCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHCCCCcEEEEEecCCCc-cH-----HHHHHHHHHHHHHHh---CCCcccccccCCHHHHHHHHH
Confidence 47899999999999999999333311 11 001122333333322 311111144568999999999
Q ss_pred hCCceEEeEEEEeecCcccccccHHHHhhhHhhhhhhHHhhhcChHHHHHHHHHHHHHHHHhhhhhhhhcCCCceEEEEE
Q 037735 246 RNGNFTIERMEKMTNPKQQVLCSASDLAVAMRAVYEGLVKEHFGDEFVDKIFNHFATKAEENISIIGQRVQDSMMDLFIL 325 (329)
Q Consensus 246 ~~g~f~i~~~e~~~~~~~~~~~~~~~~~~~iRa~~e~~~~~~~g~~~~d~~f~ry~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (329)
..| |++...+...-. ...+++.+..++++.+.+.. .+++++..+++.+++++.+.++.... +....-...++++
T Consensus 185 ~~G-f~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~ 258 (263)
T 2yqz_A 185 RLG-LKPRTREVARWR---EERTPREALEALSERLYSFT-QGLPEPVHARVMERLWAWAEAELGDL-DRPFPVEKRFLLR 258 (263)
T ss_dssp HTT-CCCEEEEEEEEE---EEECHHHHHHHHHTTCSGGG-SSSCHHHHHHHHHHHHHHHHHHSSCT-TSCEEEEEEEEEE
T ss_pred HcC-CCcceEEEeeee---cCCCHHHHHHHHHHhhcccc-cCCCHHHHHHHHHHHHHHHHHhcCCc-CccccccceeEEE
Confidence 985 998776554211 11246778888876554443 46888888998888888887654321 1112234555566
Q ss_pred EEeC
Q 037735 326 LKRI 329 (329)
Q Consensus 326 L~r~ 329 (329)
.-||
T Consensus 259 ~~rk 262 (263)
T 2yqz_A 259 VSRL 262 (263)
T ss_dssp EEEC
T ss_pred eeec
Confidence 6554
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.9e-13 Score=122.73 Aligned_cols=193 Identities=17% Similarity=0.162 Sum_probs=124.9
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC----CCcceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP----QSRSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~----~~~~~f~~gvpgsF 116 (329)
.+..+|+|+|||+|..+..+.+ ++ ..+|+..|+........-+.+. ..+..|.. +++
T Consensus 60 ~~~~~vLDiGcG~G~~~~~l~~--------~~--------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~---~d~ 120 (273)
T 3bus_A 60 RSGDRVLDVGCGIGKPAVRLAT--------AR--------DVRVTGISISRPQVNQANARATAAGLANRVTFSY---ADA 120 (273)
T ss_dssp CTTCEEEEESCTTSHHHHHHHH--------HS--------CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE---CCT
T ss_pred CCCCEEEEeCCCCCHHHHHHHH--------hc--------CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEE---Ccc
Confidence 3457999999999999988874 21 2589999998766555433321 11223444 467
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
.+..+|++++|+|+|+.++||+.+. ..+|+..++.|+|||++++..+..
T Consensus 121 ~~~~~~~~~fD~v~~~~~l~~~~~~-------------------------------~~~l~~~~~~L~pgG~l~i~~~~~ 169 (273)
T 3bus_A 121 MDLPFEDASFDAVWALESLHHMPDR-------------------------------GRALREMARVLRPGGTVAIADFVL 169 (273)
T ss_dssp TSCCSCTTCEEEEEEESCTTTSSCH-------------------------------HHHHHHHHTTEEEEEEEEEEEEEE
T ss_pred ccCCCCCCCccEEEEechhhhCCCH-------------------------------HHHHHHHHHHcCCCeEEEEEEeec
Confidence 5555889999999999999997532 478999999999999999999876
Q ss_pred CCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEeecCcccccccHHHHhhhH
Q 037735 197 PDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMTNPKQQVLCSASDLAVAM 276 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~~~~~~~~~~~~~~~~~i 276 (329)
.+.... .....+...+.. ..+ .++++.+++.+.+++.| |++++++.+...+.. .-..+...+
T Consensus 170 ~~~~~~------~~~~~~~~~~~~--~~~------~~~~~~~~~~~~l~~aG-f~~~~~~~~~~~~~~---~~~~~~~~~ 231 (273)
T 3bus_A 170 LAPVEG------AKKEAVDAFRAG--GGV------LSLGGIDEYESDVRQAE-LVVTSTVDISAQARP---SLVKTAEAF 231 (273)
T ss_dssp SSCCCH------HHHHHHHHHHHH--HTC------CCCCCHHHHHHHHHHTT-CEEEEEEECHHHHTT---HHHHHHHHH
T ss_pred cCCCCh------hHHHHHHHHHhh--cCc------cCCCCHHHHHHHHHHcC-CeEEEEEECcHhHHH---HHHHHHHHH
Confidence 542210 001111111111 112 56799999999999985 999888876433111 122333333
Q ss_pred hhhhhhHHhhhcChHHHHHHHHHHHH
Q 037735 277 RAVYEGLVKEHFGDEFVDKIFNHFAT 302 (329)
Q Consensus 277 Ra~~e~~~~~~~g~~~~d~~f~ry~~ 302 (329)
++.... +...+|++..+.+.+.++.
T Consensus 232 ~~~~~~-~~~~~~~~~~~~~~~~~~~ 256 (273)
T 3bus_A 232 ENARSQ-VEPFMGAEGLDRMIATFRG 256 (273)
T ss_dssp HHTHHH-HHHHHCHHHHHHHHHHHHH
T ss_pred HHhHHH-HHhhcCHHHHHHHHHHHHH
Confidence 333222 3456788777777766655
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.7e-13 Score=120.18 Aligned_cols=161 Identities=14% Similarity=0.091 Sum_probs=115.4
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCc-ceeeeccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSR-SYYAAGVPGSFYSS 119 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~-~~f~~gvpgsFy~~ 119 (329)
.+..+|+|+|||+|..+..+.. . .|..+++..|+........-+.+.... .-|.. +++.+.
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~--------~-------~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~---~d~~~~ 104 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLME--------K-------YPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIE---ADYSKY 104 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHH--------H-------CTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEE---SCTTTC
T ss_pred CCCCeEEEecCCCCHHHHHHHH--------h-------CCCCeEEEEECCHHHHHHHHHhhccCCCEEEEe---Cchhcc
Confidence 4568999999999999988875 2 234689999998877776665554322 23444 466444
Q ss_pred cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCC
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDG 199 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~ 199 (329)
.++ +++|+|+++.++||+++. +...+|+..++.|+|||+++++.+..++.
T Consensus 105 ~~~-~~fD~v~~~~~l~~~~~~-----------------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 154 (234)
T 3dtn_A 105 DFE-EKYDMVVSALSIHHLEDE-----------------------------DKKELYKRSYSILKESGIFINADLVHGET 154 (234)
T ss_dssp CCC-SCEEEEEEESCGGGSCHH-----------------------------HHHHHHHHHHHHEEEEEEEEEEEECBCSS
T ss_pred CCC-CCceEEEEeCccccCCHH-----------------------------HHHHHHHHHHHhcCCCcEEEEEEecCCCC
Confidence 455 999999999999997431 23468999999999999999999877653
Q ss_pred CcccCCcccchHHHHHHHHHHHHhcCCcCCCc----------ccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 200 IPLVNNAAGSFYNTFGSCLVELTKMGILSKEK----------MYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 200 ~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~----------~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
.. ........|.....++-++.++ .+.++.+|+.+++++.| |+++++...
T Consensus 155 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG-F~~v~~~~~ 214 (234)
T 3dtn_A 155 AF--------IENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAG-FRDVSCIYK 214 (234)
T ss_dssp HH--------HHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHHHHHHHTT-CEEEEEEEE
T ss_pred hh--------hhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHHHHHHHcC-CCceeeeee
Confidence 21 2334455666665544334332 45679999999999995 998877644
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.8e-12 Score=118.56 Aligned_cols=169 Identities=14% Similarity=0.117 Sum_probs=109.6
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---C-cceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---S-RSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~-~~~f~~gvpgsF 116 (329)
.+..+|||+|||+|..+..+.+.. + .+|+..|+..+.....-+.+.. . +-.+..+ ++
T Consensus 71 ~~~~~vLDiGcG~G~~~~~la~~~---------------~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~ 131 (302)
T 3hem_A 71 EPGMTLLDIGCGWGSTMRHAVAEY---------------D-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQ---GW 131 (302)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHH---------------C-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEEC---CG
T ss_pred CCcCEEEEeeccCcHHHHHHHHhC---------------C-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEC---CH
Confidence 345799999999999999887522 2 5899999988776655443321 1 2234444 45
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
..+ ++++|+|+|+.++|++.+.... .-.+++..+|+...+.|+|||+|++..+..
T Consensus 132 -~~~--~~~fD~v~~~~~~~~~~d~~~~----------------------~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 186 (302)
T 3hem_A 132 -EEF--DEPVDRIVSLGAFEHFADGAGD----------------------AGFERYDTFFKKFYNLTPDDGRMLLHTITI 186 (302)
T ss_dssp -GGC--CCCCSEEEEESCGGGTTCCSSC----------------------CCTTHHHHHHHHHHHSSCTTCEEEEEEEEC
T ss_pred -HHc--CCCccEEEEcchHHhcCccccc----------------------cchhHHHHHHHHHHHhcCCCcEEEEEEEec
Confidence 233 7899999999999998765100 001367799999999999999999999987
Q ss_pred CCCCcccCCcccchHH--HHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEeec
Q 037735 197 PDGIPLVNNAAGSFYN--TFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMTN 260 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~--~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~~ 260 (329)
++............++ ....-+...+--| .++|+++++.+.+++. +|+++.++.+..
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~------~~~~s~~~~~~~l~~a-Gf~~~~~~~~~~ 245 (302)
T 3hem_A 187 PDKEEAQELGLTSPMSLLRFIKFILTEIFPG------GRLPRISQVDYYSSNA-GWKVERYHRIGA 245 (302)
T ss_dssp CCHHHHHHHTCCCCHHHHHHHHHHHHHTCTT------CCCCCHHHHHHHHHHH-TCEEEEEEECGG
T ss_pred cCccchhhccccccccccchHHHHHHhcCCC------CCCCCHHHHHHHHHhC-CcEEEEEEeCch
Confidence 6532100000000000 0001112222223 4679999999999998 499998877643
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.45 E-value=6.1e-13 Score=122.80 Aligned_cols=192 Identities=15% Similarity=0.182 Sum_probs=115.4
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeecccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~l 120 (329)
+...+|+|+|||+|..|..+.. + -.+|+..|+..++....-+ .+ +-.|..| ++..-.
T Consensus 38 ~~~~~vLDvGcGtG~~~~~l~~--------~---------~~~v~gvD~s~~ml~~a~~-~~--~v~~~~~---~~e~~~ 94 (257)
T 4hg2_A 38 PARGDALDCGCGSGQASLGLAE--------F---------FERVHAVDPGEAQIRQALR-HP--RVTYAVA---PAEDTG 94 (257)
T ss_dssp SCSSEEEEESCTTTTTHHHHHT--------T---------CSEEEEEESCHHHHHTCCC-CT--TEEEEEC---CTTCCC
T ss_pred CCCCCEEEEcCCCCHHHHHHHH--------h---------CCEEEEEeCcHHhhhhhhh-cC--Cceeehh---hhhhhc
Confidence 3456899999999999998864 1 1479999998877554322 11 2234443 575556
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCC
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGI 200 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~ 200 (329)
+|++|+|+|+|+.++||++ . ..||++.++.|+|||+|++...+.....
T Consensus 95 ~~~~sfD~v~~~~~~h~~~-~-------------------------------~~~~~e~~rvLkpgG~l~~~~~~~~~~~ 142 (257)
T 4hg2_A 95 LPPASVDVAIAAQAMHWFD-L-------------------------------DRFWAELRRVARPGAVFAAVTYGLTRVD 142 (257)
T ss_dssp CCSSCEEEEEECSCCTTCC-H-------------------------------HHHHHHHHHHEEEEEEEEEEEECCCBCC
T ss_pred ccCCcccEEEEeeehhHhh-H-------------------------------HHHHHHHHHHcCCCCEEEEEECCCCCCC
Confidence 8999999999999999963 2 3789999999999999999998876533
Q ss_pred cccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHH-HHHHHHhCCceEEeEEEEeecCcccccccHHHHhhhHhhh
Q 037735 201 PLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKE-LEGIIQRNGNFTIERMEKMTNPKQQVLCSASDLAVAMRAV 279 (329)
Q Consensus 201 ~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE-~~~~i~~~g~f~i~~~e~~~~~~~~~~~~~~~~~~~iRa~ 279 (329)
+ .+...+..+..+-+- -|.+.... +....+ .-.|....++.... ......+.+.+..++|++
T Consensus 143 ~-----------~~~~~~~~~~~~~~~----~~~~~~~~~~~~~y~-~l~~pf~~~~~~~~-~~~~~~tl~~~~~~l~T~ 205 (257)
T 4hg2_A 143 P-----------EVDAVVDRLYHGLLA----RDWPPERVHVESGYR-TLPFPFPELEAPPL-EIEERWPMDAFLGYLGTW 205 (257)
T ss_dssp H-----------HHHHHHHHHHHTTTG----GGCCSCCHHHHTTTT-TSCCCSCEECCCCC-EEEEEECHHHHHHHHTTS
T ss_pred H-----------HHHHHHHHHHhcccc----cccchhhhHHHhhhh-hCCCCCccceeeEE-EEEEEecHHHHHHHHHHH
Confidence 2 334444444332210 22222111 111111 10111111111100 111122467788999987
Q ss_pred hh-hHHhhhcChHHHHHHHHHHHHHH
Q 037735 280 YE-GLVKEHFGDEFVDKIFNHFATKA 304 (329)
Q Consensus 280 ~e-~~~~~~~g~~~~d~~f~ry~~~~ 304 (329)
+. ......-+++.++++.+++++.+
T Consensus 206 S~~~~~~~~~~~d~l~~~~~~l~~~~ 231 (257)
T 4hg2_A 206 SAVTAHRRRTGADPLAEIAPALRAAW 231 (257)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHhc
Confidence 64 23344457777777777776554
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=6e-12 Score=113.67 Aligned_cols=153 Identities=14% Similarity=0.183 Sum_probs=110.4
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC-cceeeeccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS-RSYYAAGVPGSFYSS 119 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~-~~~f~~gvpgsFy~~ 119 (329)
.+..+|+|+|||+|..+..+.. ++ ..+|+..|+..+.....-+..... +..|..+ ++...
T Consensus 54 ~~~~~vLdiG~G~G~~~~~l~~--------~~--------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~---d~~~~ 114 (266)
T 3ujc_A 54 NENSKVLDIGSGLGGGCMYINE--------KY--------GAHTHGIDICSNIVNMANERVSGNNKIIFEAN---DILTK 114 (266)
T ss_dssp CTTCEEEEETCTTSHHHHHHHH--------HH--------CCEEEEEESCHHHHHHHHHTCCSCTTEEEEEC---CTTTC
T ss_pred CCCCEEEEECCCCCHHHHHHHH--------Hc--------CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEEC---ccccC
Confidence 3457999999999999988875 21 148999999887766655554331 2234443 56555
Q ss_pred cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCC
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDG 199 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~ 199 (329)
.+|++++|+|+|+.++||++. .|...+|+..++.|+|||++++..+..++.
T Consensus 115 ~~~~~~fD~v~~~~~l~~~~~-----------------------------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~ 165 (266)
T 3ujc_A 115 EFPENNFDLIYSRDAILALSL-----------------------------ENKNKLFQKCYKWLKPTGTLLITDYCATEK 165 (266)
T ss_dssp CCCTTCEEEEEEESCGGGSCH-----------------------------HHHHHHHHHHHHHEEEEEEEEEEEEEESCG
T ss_pred CCCCCcEEEEeHHHHHHhcCh-----------------------------HHHHHHHHHHHHHcCCCCEEEEEEeccCCc
Confidence 688999999999999999731 256689999999999999999999876652
Q ss_pred CcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEee
Q 037735 200 IPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMT 259 (329)
Q Consensus 200 ~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~ 259 (329)
.+. ...+...+ ...| ..+++.+++.+.++.. +|++++.+.+.
T Consensus 166 ~~~--------~~~~~~~~---~~~~------~~~~~~~~~~~~l~~~-Gf~~~~~~~~~ 207 (266)
T 3ujc_A 166 ENW--------DDEFKEYV---KQRK------YTLITVEEYADILTAC-NFKNVVSKDLS 207 (266)
T ss_dssp GGC--------CHHHHHHH---HHHT------CCCCCHHHHHHHHHHT-TCEEEEEEECH
T ss_pred ccc--------hHHHHHHH---hcCC------CCCCCHHHHHHHHHHc-CCeEEEEEeCC
Confidence 221 11122111 2234 5678999999999998 49998887663
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=4.4e-12 Score=114.56 Aligned_cols=207 Identities=16% Similarity=0.111 Sum_probs=132.4
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC----Ccceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ----SRSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~----~~~~f~~gvpgsFy 117 (329)
+..+|+|+|||+|..+..+.. . .+ .+|+..|+........-+.+.. .+..|..+ ++.
T Consensus 46 ~~~~vLDiG~G~G~~~~~l~~--------~-------~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~---d~~ 106 (257)
T 3f4k_A 46 DDAKIADIGCGTGGQTLFLAD--------Y-------VK-GQITGIDLFPDFIEIFNENAVKANCADRVKGITG---SMD 106 (257)
T ss_dssp TTCEEEEETCTTSHHHHHHHH--------H-------CC-SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC---CTT
T ss_pred CCCeEEEeCCCCCHHHHHHHH--------h-------CC-CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEEC---Chh
Confidence 456999999999999998875 2 23 2899999987666654333211 11234444 564
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
.-.+|++++|+|+|+.++||+ +. ..+|+...+.|+|||+++++.+...
T Consensus 107 ~~~~~~~~fD~v~~~~~l~~~-~~-------------------------------~~~l~~~~~~L~pgG~l~~~~~~~~ 154 (257)
T 3f4k_A 107 NLPFQNEELDLIWSEGAIYNI-GF-------------------------------ERGMNEWSKYLKKGGFIAVSEASWF 154 (257)
T ss_dssp SCSSCTTCEEEEEEESCSCCC-CH-------------------------------HHHHHHHHTTEEEEEEEEEEEEEES
T ss_pred hCCCCCCCEEEEEecChHhhc-CH-------------------------------HHHHHHHHHHcCCCcEEEEEEeecc
Confidence 445788999999999999997 22 2679999999999999999987633
Q ss_pred CCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEeecC-cccccccHHHHhhhH
Q 037735 198 DGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMTNP-KQQVLCSASDLAVAM 276 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~~~-~~~~~~~~~~~~~~i 276 (329)
..... ..+...|.... ..+++.+++.+.+++.| |+++........ |.+. +...+
T Consensus 155 ~~~~~---------~~~~~~~~~~~---------~~~~~~~~~~~~l~~aG-f~~v~~~~~~~~~w~~~------~~~~~ 209 (257)
T 3f4k_A 155 TSERP---------AEIEDFWMDAY---------PEISVIPTCIDKMERAG-YTPTAHFILPENCWTEH------YFAPQ 209 (257)
T ss_dssp SSCCC---------HHHHHHHHHHC---------TTCCBHHHHHHHHHHTT-EEEEEEEECCGGGTCCC------CCHHH
T ss_pred CCCCh---------HHHHHHHHHhC---------CCCCCHHHHHHHHHHCC-CeEEEEEECChhhHHHH------HHHHH
Confidence 32111 12333344321 23579999999999985 999887766443 5322 22333
Q ss_pred hhhhhhHHhhhcChHHHHHHHHHHHHHHHHhhhhhhhhcCCCceEEEEEEEeC
Q 037735 277 RAVYEGLVKEHFGDEFVDKIFNHFATKAEENISIIGQRVQDSMMDLFILLKRI 329 (329)
Q Consensus 277 Ra~~e~~~~~~~g~~~~d~~f~ry~~~~~~~~~~~~~~~~~~~~~~~~~L~r~ 329 (329)
+...+.....+-+....+++.++.++....+ ..+ ...+--.+++++|+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~g~~~~v~~k~ 257 (257)
T 3f4k_A 210 DEVRETFMKEHAGNKTAMDFMKGQQYERSLY-SKY----KDYYGYVFYIGQKR 257 (257)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HHH----TTTEEEEEEEEEEC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHh----CCccceEEEEEecC
Confidence 3444444555556666666666655544433 222 12234566777775
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.43 E-value=5.2e-12 Score=116.91 Aligned_cols=150 Identities=14% Similarity=0.069 Sum_probs=105.5
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CC-Ccceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQ-SRSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~-~~~~f~~gvpgsF 116 (329)
.+..+|||+|||+|..+..+.+.. ..+++..|+........-+.+ .. .+--|.. +++
T Consensus 81 ~~~~~vLDiGcG~G~~~~~l~~~~----------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~---~d~ 141 (297)
T 2o57_A 81 QRQAKGLDLGAGYGGAARFLVRKF----------------GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKY---GSF 141 (297)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHH----------------CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEE---CCT
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHh----------------CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEE---cCc
Confidence 345799999999999999887521 147999999876655543322 11 1223444 367
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
.+-.+|++++|+|++..++||+.+ ...+|+..++.|+|||+|+++.+..
T Consensus 142 ~~~~~~~~~fD~v~~~~~l~~~~~-------------------------------~~~~l~~~~~~LkpgG~l~~~~~~~ 190 (297)
T 2o57_A 142 LEIPCEDNSYDFIWSQDAFLHSPD-------------------------------KLKVFQECARVLKPRGVMAITDPMK 190 (297)
T ss_dssp TSCSSCTTCEEEEEEESCGGGCSC-------------------------------HHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred ccCCCCCCCEeEEEecchhhhcCC-------------------------------HHHHHHHHHHHcCCCeEEEEEEecc
Confidence 665688999999999999999754 2488999999999999999999876
Q ss_pred CCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 197 PDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
.+..+.. .+...+... +. ..+++.+++.+++++.| |++++++.+
T Consensus 191 ~~~~~~~---------~~~~~~~~~---~~-----~~~~~~~~~~~~l~~aG-f~~~~~~~~ 234 (297)
T 2o57_A 191 EDGIDKS---------SIQPILDRI---KL-----HDMGSLGLYRSLAKECG-LVTLRTFSR 234 (297)
T ss_dssp CTTCCGG---------GGHHHHHHH---TC-----SSCCCHHHHHHHHHHTT-EEEEEEEEC
T ss_pred CCCCchH---------HHHHHHHHh---cC-----CCCCCHHHHHHHHHHCC-CeEEEEEEC
Confidence 6532210 111112222 11 34579999999999984 999888765
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.43 E-value=4e-13 Score=118.64 Aligned_cols=153 Identities=19% Similarity=0.211 Sum_probs=107.6
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccC
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLF 121 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lf 121 (329)
+..+|+|+|||+|.++..+.. + ..+++..|+........-+.++ .+.-|.. +++.+-.+
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~--------~---------~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~---~d~~~~~~ 103 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLL--------A---------GRTVYGIEPSREMRMIAKEKLP-KEFSITE---GDFLSFEV 103 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHH--------T---------TCEEEEECSCHHHHHHHHHHSC-TTCCEES---CCSSSCCC
T ss_pred CCCeEEEeCCCCCHHHHHHHh--------C---------CCeEEEEeCCHHHHHHHHHhCC-CceEEEe---CChhhcCC
Confidence 457999999999999888864 1 1589999998877666655554 1223444 35655456
Q ss_pred CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCCc
Q 037735 122 PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIP 201 (329)
Q Consensus 122 p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~ 201 (329)
+ +++|+|+++.++||+.+.. ...+|+..++.|+|||.++++.+...+.
T Consensus 104 ~-~~fD~v~~~~~l~~~~~~~-----------------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~-- 151 (220)
T 3hnr_A 104 P-TSIDTIVSTYAFHHLTDDE-----------------------------KNVAIAKYSQLLNKGGKIVFADTIFADQ-- 151 (220)
T ss_dssp C-SCCSEEEEESCGGGSCHHH-----------------------------HHHHHHHHHHHSCTTCEEEEEEECBSSH--
T ss_pred C-CCeEEEEECcchhcCChHH-----------------------------HHHHHHHHHHhcCCCCEEEEEeccccCh--
Confidence 6 9999999999999975321 2358999999999999999998655431
Q ss_pred ccCCcccchHHHHHHHHHHHHhcCCcCCCc----ccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 202 LVNNAAGSFYNTFGSCLVELTKMGILSKEK----MYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 202 ~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~----~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
......+..+...|...... .++++.+++.+.+++.| |+++..+..
T Consensus 152 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~v~~~~~~ 201 (220)
T 3hnr_A 152 ----------DAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNG-FHVTFTRLN 201 (220)
T ss_dssp ----------HHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTT-EEEEEEECS
T ss_pred ----------HHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCC-CEEEEeecc
Confidence 12223333444444321111 67889999999999995 998887754
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-12 Score=120.42 Aligned_cols=156 Identities=10% Similarity=0.084 Sum_probs=100.3
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccce--EEecCCCcchHHhhhhcCCC---Ccce-eeecccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQ--VFFNDHSDNDFNTLFKSLPQ---SRSY-YAAGVPG 114 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~--v~~nDLp~ndfn~lf~~l~~---~~~~-f~~gvpg 114 (329)
.+..+|||+|||+|..|..++..+. .+ .|... ++..|...++....-+.+.. ..++ |.. ..+
T Consensus 51 ~~~~~VLDiG~GtG~~~~~~l~~l~----~~-------~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~-~~~ 118 (292)
T 2aot_A 51 KSEIKILSIGGGAGEIDLQILSKVQ----AQ-------YPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAW-HKE 118 (292)
T ss_dssp CSEEEEEEETCTTSHHHHHHHHHHH----HH-------STTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEE-ECS
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHHH----hh-------CCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEE-Eec
Confidence 3567999999999988877665431 12 23343 49999998887765443311 1111 111 112
Q ss_pred ccccc------cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCce
Q 037735 115 SFYSS------LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGL 188 (329)
Q Consensus 115 sFy~~------lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~ 188 (329)
+.... -|+++++|+|+++.++||+.++ ..+|+..++.|+|||+
T Consensus 119 ~~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~d~-------------------------------~~~l~~~~r~LkpgG~ 167 (292)
T 2aot_A 119 TSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDI-------------------------------PATLKFFHSLLGTNAK 167 (292)
T ss_dssp CHHHHHHHHHTTTCCCCEEEEEEESCGGGCSCH-------------------------------HHHHHHHHHTEEEEEE
T ss_pred chhhhhhhhccccCCCceeEEEEeeeeeecCCH-------------------------------HHHHHHHHHHcCCCcE
Confidence 33221 2578999999999999997643 4789999999999999
Q ss_pred EEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCc-ccCCCHHHHHHHHHhCCceEEeEEE
Q 037735 189 AALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEK-MYNPTPKELEGIIQRNGNFTIERME 256 (329)
Q Consensus 189 l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~-~y~ps~eE~~~~i~~~g~f~i~~~e 256 (329)
+++.....+. .|. ..|..... . +.... ..+++++++.+++++.| |++....
T Consensus 168 l~i~~~~~~~-----------~~~---~~~~~~~~-~-~~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~ 219 (292)
T 2aot_A 168 MLIIVVSGSS-----------GWD---KLWKKYGS-R-FPQDDLCQYITSDDLTQMLDNLG-LKYECYD 219 (292)
T ss_dssp EEEEEECTTS-----------HHH---HHHHHHGG-G-SCCCTTCCCCCHHHHHHHHHHHT-CCEEEEE
T ss_pred EEEEEecCCc-----------cHH---HHHHHHHH-h-ccCCCcccCCCHHHHHHHHHHCC-CceEEEE
Confidence 9999765432 111 12232211 1 01111 56689999999999985 9887644
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=8.8e-12 Score=113.79 Aligned_cols=208 Identities=16% Similarity=0.095 Sum_probs=130.4
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---C-Ccceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---Q-SRSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~-~~~~f~~gvpgsF 116 (329)
.+..+|+|+|||+|..+..+.. .+..+|+..|+........-+.+. - .+.-|..+ ++
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~----------------~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~ 105 (267)
T 3kkz_A 45 TEKSLIADIGCGTGGQTMVLAG----------------HVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVG---SM 105 (267)
T ss_dssp CTTCEEEEETCTTCHHHHHHHT----------------TCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC---CT
T ss_pred CCCCEEEEeCCCCCHHHHHHHh----------------ccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEc---Ch
Confidence 4568999999999999988864 234589999998776665443321 1 12334443 56
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
.+-.+|++++|+|+|+.++|++ +. ..+|+...+.|+|||+++++.+..
T Consensus 106 ~~~~~~~~~fD~i~~~~~~~~~-~~-------------------------------~~~l~~~~~~LkpgG~l~~~~~~~ 153 (267)
T 3kkz_A 106 DDLPFRNEELDLIWSEGAIYNI-GF-------------------------------ERGLNEWRKYLKKGGYLAVSECSW 153 (267)
T ss_dssp TSCCCCTTCEEEEEESSCGGGT-CH-------------------------------HHHHHHHGGGEEEEEEEEEEEEEE
T ss_pred hhCCCCCCCEEEEEEcCCceec-CH-------------------------------HHHHHHHHHHcCCCCEEEEEEeee
Confidence 4444789999999999999997 32 378999999999999999998864
Q ss_pred CCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEeecC-cccccccHHHHhhh
Q 037735 197 PDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMTNP-KQQVLCSASDLAVA 275 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~~~-~~~~~~~~~~~~~~ 275 (329)
...... ..+...|..- . ..+++.+++.+.+++.| |+++..+.+... |.+ .+...
T Consensus 154 ~~~~~~---------~~~~~~~~~~---~------~~~~~~~~~~~~l~~aG-f~~v~~~~~~~~~w~~------~~~~~ 208 (267)
T 3kkz_A 154 FTDERP---------AEINDFWMDA---Y------PEIDTIPNQVAKIHKAG-YLPVATFILPENCWTD------HYFTP 208 (267)
T ss_dssp SSSCCC---------HHHHHHHHHH---C------TTCEEHHHHHHHHHHTT-EEEEEEEECCGGGTTT------TTHHH
T ss_pred cCCCCh---------HHHHHHHHHh---C------CCCCCHHHHHHHHHHCC-CEEEEEEECCHhHHHH------HHHHH
Confidence 332111 1233334321 1 35689999999999985 999988776443 532 23333
Q ss_pred HhhhhhhHHhhhcChHHHHHHHHHHHHHHHHhhhhhhhhcCCCceEEEEEEEeC
Q 037735 276 MRAVYEGLVKEHFGDEFVDKIFNHFATKAEENISIIGQRVQDSMMDLFILLKRI 329 (329)
Q Consensus 276 iRa~~e~~~~~~~g~~~~d~~f~ry~~~~~~~~~~~~~~~~~~~~~~~~~L~r~ 329 (329)
+..+...+...+-....+.++.+...+.... ...+ ...+...|.+++|+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~y----~~~~~~~f~~~~~~ 257 (267)
T 3kkz_A 209 KVAAQKIFLTKYAGNKIAEEFSMLQSIEEEL-YHKY----KEYYGYTFFIAKKI 257 (267)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH-HHHH----TTTEEEEEEEEEEC
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH-HHHh----ccccCeEeehhhHH
Confidence 4444444444433444444544443322221 2212 11245556666653
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-12 Score=116.85 Aligned_cols=173 Identities=12% Similarity=0.070 Sum_probs=114.2
Q ss_pred cchHHHhHHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEec
Q 037735 8 HSYASNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFN 87 (329)
Q Consensus 8 ~sY~~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~n 87 (329)
..|.......+.....+...+...+.. ..+..+|||+|||+|..+..+.+ . ..+|+..
T Consensus 12 ~~y~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~vLDiGcG~G~~~~~l~~--------~---------~~~v~gv 69 (240)
T 3dli_A 12 DYYFLFEEKFRGSRELVKARLRRYIPY-----FKGCRRVLDIGCGRGEFLELCKE--------E---------GIESIGV 69 (240)
T ss_dssp CHHHHHHHHHTCCHHHHHHHHGGGGGG-----TTTCSCEEEETCTTTHHHHHHHH--------H---------TCCEEEE
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhh-----hcCCCeEEEEeCCCCHHHHHHHh--------C---------CCcEEEE
Confidence 345555554443333333333322222 23457999999999999877653 1 1468999
Q ss_pred CCCcchHHhhhhcCCCCcceeeeccccccccc--cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHH
Q 037735 88 DHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSS--LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYA 165 (329)
Q Consensus 88 DLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~--lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~ 165 (329)
|+........-+. .-++. +++.+- .+|++++|+|+|+.++||+.+
T Consensus 70 D~s~~~~~~a~~~-----~~~~~---~d~~~~~~~~~~~~fD~i~~~~~l~~~~~------------------------- 116 (240)
T 3dli_A 70 DINEDMIKFCEGK-----FNVVK---SDAIEYLKSLPDKYLDGVMISHFVEHLDP------------------------- 116 (240)
T ss_dssp CSCHHHHHHHHTT-----SEEEC---SCHHHHHHTSCTTCBSEEEEESCGGGSCG-------------------------
T ss_pred ECCHHHHHHHHhh-----cceee---ccHHHHhhhcCCCCeeEEEECCchhhCCc-------------------------
Confidence 9987665554333 11232 344332 578999999999999999752
Q ss_pred HHHhhcHHHHHHHHHHHhccCceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHH
Q 037735 166 AQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQ 245 (329)
Q Consensus 166 ~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~ 245 (329)
.|+..+|+..++.|+|||+|++.+++..+. . .+...+ +.....++.+.+++.++++
T Consensus 117 ----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~-----------~-~~~~~~--------~~~~~~~~~~~~~l~~~l~ 172 (240)
T 3dli_A 117 ----ERLFELLSLCYSKMKYSSYIVIESPNPTSL-----------Y-SLINFY--------IDPTHKKPVHPETLKFILE 172 (240)
T ss_dssp ----GGHHHHHHHHHHHBCTTCCEEEEEECTTSH-----------H-HHHHHT--------TSTTCCSCCCHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHcCCCcEEEEEeCCcchh-----------H-HHHHHh--------cCccccccCCHHHHHHHHH
Confidence 256789999999999999999999875531 1 111111 1111156789999999999
Q ss_pred hCCceEEeEEEEeec
Q 037735 246 RNGNFTIERMEKMTN 260 (329)
Q Consensus 246 ~~g~f~i~~~e~~~~ 260 (329)
+.| |++...+.+.+
T Consensus 173 ~aG-f~~~~~~~~~~ 186 (240)
T 3dli_A 173 YLG-FRDVKIEFFEE 186 (240)
T ss_dssp HHT-CEEEEEEEECC
T ss_pred HCC-CeEEEEEEecc
Confidence 984 99988887754
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.9e-11 Score=112.58 Aligned_cols=160 Identities=15% Similarity=0.188 Sum_probs=102.9
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC----Ccceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ----SRSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~----~~~~f~~gvpgsF 116 (329)
.+..+|+|+|||+|..+..+.+.. + .+|+..|+..+.....-+.+.. .+.-+..+ ++
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~~---------------~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~---d~ 123 (287)
T 1kpg_A 63 QPGMTLLDVGCGWGATMMRAVEKY---------------D-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLA---GW 123 (287)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHH---------------C-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEES---CG
T ss_pred CCcCEEEEECCcccHHHHHHHHHc---------------C-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEEC---Ch
Confidence 345799999999999998887421 1 3899999987776654443221 12234443 45
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
.. +| +++|+|+|..++|++.. .|...+|+..++.|+|||++++..+..
T Consensus 124 -~~-~~-~~fD~v~~~~~l~~~~~-----------------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 171 (287)
T 1kpg_A 124 -EQ-FD-EPVDRIVSIGAFEHFGH-----------------------------ERYDAFFSLAHRLLPADGVMLLHTITG 171 (287)
T ss_dssp -GG-CC-CCCSEEEEESCGGGTCT-----------------------------TTHHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred -hh-CC-CCeeEEEEeCchhhcCh-----------------------------HHHHHHHHHHHHhcCCCCEEEEEEecC
Confidence 22 35 89999999999999742 145688999999999999999999886
Q ss_pred CCCCcccCCcccchHH--HHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 197 PDGIPLVNNAAGSFYN--TFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~--~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
.+.......+....+. ....-+..-.-.| ..+|+++++.+.+++. +|++++.+..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~s~~~~~~~l~~a-Gf~~~~~~~~ 228 (287)
T 1kpg_A 172 LHPKEIHERGLPMSFTFARFLKFIVTEIFPG------GRLPSIPMVQECASAN-GFTVTRVQSL 228 (287)
T ss_dssp CCHHHHTTTTCSCHHHHHHHHHHHHHHTSTT------CCCCCHHHHHHHHHTT-TCEEEEEEEC
T ss_pred CCccccccccccccccccchhhhHHheeCCC------CCCCCHHHHHHHHHhC-CcEEEEEEeC
Confidence 5421100000000000 0111111111112 3568999999999988 5999888765
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.40 E-value=4.8e-13 Score=121.61 Aligned_cols=153 Identities=14% Similarity=0.167 Sum_probs=105.4
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcceeeeccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSYYAAGVPGSFY 117 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~f~~gvpgsFy 117 (329)
.+..+|+|+|||+|..+..+.. + . .+++..|+...+....-+.+. ..+.-|.. +++.
T Consensus 36 ~~~~~vLDiGcG~G~~~~~l~~--------~-------~--~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~---~d~~ 95 (260)
T 1vl5_A 36 KGNEEVLDVATGGGHVANAFAP--------F-------V--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQ---GDAE 95 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHGG--------G-------S--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEE---CCC-
T ss_pred CCCCEEEEEeCCCCHHHHHHHH--------h-------C--CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEE---ecHH
Confidence 3567999999999998887753 1 1 279999998777665443321 11223444 3565
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
...+|++++|+|+|+.++||+.+. ..+|+..++.|+|||++++.....+
T Consensus 96 ~l~~~~~~fD~V~~~~~l~~~~d~-------------------------------~~~l~~~~r~LkpgG~l~~~~~~~~ 144 (260)
T 1vl5_A 96 QMPFTDERFHIVTCRIAAHHFPNP-------------------------------ASFVSEAYRVLKKGGQLLLVDNSAP 144 (260)
T ss_dssp CCCSCTTCEEEEEEESCGGGCSCH-------------------------------HHHHHHHHHHEEEEEEEEEEEEEBC
T ss_pred hCCCCCCCEEEEEEhhhhHhcCCH-------------------------------HHHHHHHHHHcCCCCEEEEEEcCCC
Confidence 555889999999999999997543 3789999999999999999876654
Q ss_pred CCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEee
Q 037735 198 DGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMT 259 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~ 259 (329)
+.. .+..+...+..+...+ ...+.+.+++.+++++. +|++..++...
T Consensus 145 ~~~---------~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~a-Gf~~~~~~~~~ 191 (260)
T 1vl5_A 145 END---------AFDVFYNYVEKERDYS-----HHRAWKKSDWLKMLEEA-GFELEELHCFH 191 (260)
T ss_dssp SSH---------HHHHHHHHHHHHHCTT-----CCCCCBHHHHHHHHHHH-TCEEEEEEEEE
T ss_pred CCH---------HHHHHHHHHHHhcCcc-----ccCCCCHHHHHHHHHHC-CCeEEEEEEee
Confidence 321 1222222223222111 14567999999999988 49998888764
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.8e-12 Score=117.13 Aligned_cols=192 Identities=14% Similarity=0.121 Sum_probs=119.5
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeecccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~l 120 (329)
.+..+|+|+|||+|..+..+.+ +..+|+..|+...+....-+. + +--|.. +++..-.
T Consensus 33 ~~~~~vLDiGcG~G~~~~~l~~-----------------~~~~v~gvD~s~~~~~~a~~~-~--~~~~~~---~d~~~~~ 89 (261)
T 3ege_A 33 PKGSVIADIGAGTGGYSVALAN-----------------QGLFVYAVEPSIVMRQQAVVH-P--QVEWFT---GYAENLA 89 (261)
T ss_dssp CTTCEEEEETCTTSHHHHHHHT-----------------TTCEEEEECSCHHHHHSSCCC-T--TEEEEC---CCTTSCC
T ss_pred CCCCEEEEEcCcccHHHHHHHh-----------------CCCEEEEEeCCHHHHHHHHhc-c--CCEEEE---CchhhCC
Confidence 4568999999999999888862 336899999987554432221 1 223444 3565545
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCC
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGI 200 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~ 200 (329)
+|++++|+|+|+.++||+. |+..+|+..++.|+ ||++++..+.++...
T Consensus 90 ~~~~~fD~v~~~~~l~~~~-------------------------------~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~ 137 (261)
T 3ege_A 90 LPDKSVDGVISILAIHHFS-------------------------------HLEKSFQEMQRIIR-DGTIVLLTFDIRLAQ 137 (261)
T ss_dssp SCTTCBSEEEEESCGGGCS-------------------------------SHHHHHHHHHHHBC-SSCEEEEEECGGGCC
T ss_pred CCCCCEeEEEEcchHhhcc-------------------------------CHHHHHHHHHHHhC-CcEEEEEEcCCchhH
Confidence 7899999999999999974 44588999999999 999999988765432
Q ss_pred cccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEeecC---c--ccccc--cHHHHh
Q 037735 201 PLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMTNP---K--QQVLC--SASDLA 273 (329)
Q Consensus 201 ~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~~~---~--~~~~~--~~~~~~ 273 (329)
.. .....+..+ .. ..+ .++++.+++. .+++. ||++++.+.+..+ | +.+.. .+..+.
T Consensus 138 ~~---~~~~~~~~~---~~---~~~------~~~~~~~~~~-~l~~a-GF~~v~~~~~~~p~~~~~~~~~~~~~~~~~~~ 200 (261)
T 3ege_A 138 RI---WLYDYFPFL---WE---DAL------RFLPLDEQIN-LLQEN-TKRRVEAIPFLLPHDLSDLFAAAAWRRPELYL 200 (261)
T ss_dssp CC---GGGGTCHHH---HH---HHH------TSCCHHHHHH-HHHHH-HCSEEEEEECCEETTCSBCCTTTTTTCGGGGG
T ss_pred HH---HHHHHHHHH---hh---hhh------hhCCCHHHHH-HHHHc-CCCceeEEEecCCCcCcchhhHHhccCchhhc
Confidence 11 111111111 11 112 5678999999 88888 5998888876332 2 11110 122222
Q ss_pred hhHhhhhhhHHhhhcChHHHHHHHHHHHHHHH
Q 037735 274 VAMRAVYEGLVKEHFGDEFVDKIFNHFATKAE 305 (329)
Q Consensus 274 ~~iRa~~e~~~~~~~g~~~~d~~f~ry~~~~~ 305 (329)
..........+ ..++++-++.+.++.++.+.
T Consensus 201 ~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~l~ 231 (261)
T 3ege_A 201 KAEVRAGISSF-ALANQDLVEKGLELLTADLN 231 (261)
T ss_dssp SHHHHHTSHHH-HHSCHHHHHHHHHHHHHHHH
T ss_pred Ccchhccccce-eecCHHHHHHHHHHHHHHHh
Confidence 22222111111 23467777777777665553
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.4e-12 Score=112.31 Aligned_cols=163 Identities=17% Similarity=0.161 Sum_probs=111.2
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCc--------ceeeecc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSR--------SYYAAGV 112 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~--------~~f~~gv 112 (329)
++..+|+|+|||+|..+..+.. . ..+++..|+........-+.+.... .-|..+
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~--------~---------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~- 90 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELAS--------K---------GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVE- 90 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHH--------T---------TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEEC-
T ss_pred CCCCeEEEECCCCCHHHHHHHh--------C---------CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEe-
Confidence 3467999999999999988864 1 2589999998777666555443211 123443
Q ss_pred ccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEE
Q 037735 113 PGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALV 192 (329)
Q Consensus 113 pgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~ 192 (329)
++..-.+|++++|+|+++.++|++.+.. +...+|+...+.|+|||+|+++
T Consensus 91 --d~~~~~~~~~~~D~v~~~~~l~~~~~~~----------------------------~~~~~l~~~~~~L~pgG~l~~~ 140 (235)
T 3sm3_A 91 --NASSLSFHDSSFDFAVMQAFLTSVPDPK----------------------------ERSRIIKEVFRVLKPGAYLYLV 140 (235)
T ss_dssp --CTTSCCSCTTCEEEEEEESCGGGCCCHH----------------------------HHHHHHHHHHHHEEEEEEEEEE
T ss_pred --cccccCCCCCceeEEEEcchhhcCCCHH----------------------------HHHHHHHHHHHHcCCCeEEEEE
Confidence 4545457899999999999999975422 3447899999999999999999
Q ss_pred ecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCC-------c--ccCCCHHHHHHHHHhCCceEEeEEEEee
Q 037735 193 MFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKE-------K--MYNPTPKELEGIIQRNGNFTIERMEKMT 259 (329)
Q Consensus 193 ~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~-------~--~y~ps~eE~~~~i~~~g~f~i~~~e~~~ 259 (329)
.+++....+. +.......+......|..... . .++.+.+|+.+++++. ||+++.++...
T Consensus 141 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~a-Gf~~~~~~~~~ 208 (235)
T 3sm3_A 141 EFGQNWHLKL-------YRKRYLHDFPITKEEGSFLARDPETGETEFIAHHFTEKELVFLLTDC-RFEIDYFRVKE 208 (235)
T ss_dssp EEBCCTTSHH-------HHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBCHHHHHHHHHTT-TEEEEEEEEEE
T ss_pred ECCcchhHHH-------HHHHhhhhccchhhhcceEecccccCCcceeeEeCCHHHHHHHHHHc-CCEEEEEEecc
Confidence 9987653221 112222222222222321111 1 4678999999999998 59999988653
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.9e-12 Score=116.62 Aligned_cols=153 Identities=16% Similarity=0.214 Sum_probs=104.5
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcceeeeccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSYYAAGVPGSFY 117 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~f~~gvpgsFy 117 (329)
.+..+|+|+|||+|..+..+.. . . .+++..|+...+....-+.+. ...-.|..+ ++.
T Consensus 20 ~~~~~vLDiGcG~G~~~~~l~~--------~-------~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~---d~~ 79 (239)
T 1xxl_A 20 RAEHRVLDIGAGAGHTALAFSP--------Y-------V--QECIGVDATKEMVEVASSFAQEKGVENVRFQQG---TAE 79 (239)
T ss_dssp CTTCEEEEESCTTSHHHHHHGG--------G-------S--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEEC---BTT
T ss_pred CCCCEEEEEccCcCHHHHHHHH--------h-------C--CEEEEEECCHHHHHHHHHHHHHcCCCCeEEEec---ccc
Confidence 4567999999999999887753 1 1 279999998776655433321 111234443 564
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
...++++++|+|+++.++||+.+ ...+|+..++.|+|||++++.....+
T Consensus 80 ~~~~~~~~fD~v~~~~~l~~~~~-------------------------------~~~~l~~~~~~LkpgG~l~~~~~~~~ 128 (239)
T 1xxl_A 80 SLPFPDDSFDIITCRYAAHHFSD-------------------------------VRKAVREVARVLKQDGRFLLVDHYAP 128 (239)
T ss_dssp BCCSCTTCEEEEEEESCGGGCSC-------------------------------HHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred cCCCCCCcEEEEEECCchhhccC-------------------------------HHHHHHHHHHHcCCCcEEEEEEcCCC
Confidence 54578899999999999999754 34789999999999999999877654
Q ss_pred CCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEee
Q 037735 198 DGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMT 259 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~ 259 (329)
+.. ..+.+...+..+. .+ ....+.+.+++.+++++.| |++..+....
T Consensus 129 ~~~---------~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~ll~~aG-f~~~~~~~~~ 175 (239)
T 1xxl_A 129 EDP---------VLDEFVNHLNRLR-DP----SHVRESSLSEWQAMFSANQ-LAYQDIQKWN 175 (239)
T ss_dssp SSH---------HHHHHHHHHHHHH-CT----TCCCCCBHHHHHHHHHHTT-EEEEEEEEEE
T ss_pred CCh---------hHHHHHHHHHHhc-cc----cccCCCCHHHHHHHHHHCC-CcEEEEEeec
Confidence 321 1222222222221 11 0134568999999999985 9998887764
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.35 E-value=5.6e-12 Score=116.17 Aligned_cols=157 Identities=16% Similarity=0.263 Sum_probs=107.0
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC----Ccceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ----SRSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~----~~~~f~~gvpgsF 116 (329)
.++.+|+|+|||+|..+..+.. . ..+++..|+...+....-+.+.. .+.-|+.+ ++
T Consensus 67 ~~~~~vLDiGcG~G~~~~~l~~--------~---------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~ 126 (285)
T 4htf_A 67 PQKLRVLDAGGGEGQTAIKMAE--------R---------GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHC---AA 126 (285)
T ss_dssp SSCCEEEEETCTTCHHHHHHHH--------T---------TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEES---CG
T ss_pred CCCCEEEEeCCcchHHHHHHHH--------C---------CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEc---CH
Confidence 4467999999999999888864 1 25899999987776665444321 11224444 56
Q ss_pred cccc-CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 117 YSSL-FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 117 y~~l-fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
.+.. ++++++|+|+++.++||+.+ ...+|+..++.|+|||++++..+.
T Consensus 127 ~~~~~~~~~~fD~v~~~~~l~~~~~-------------------------------~~~~l~~~~~~LkpgG~l~~~~~~ 175 (285)
T 4htf_A 127 QDVASHLETPVDLILFHAVLEWVAD-------------------------------PRSVLQTLWSVLRPGGVLSLMFYN 175 (285)
T ss_dssp GGTGGGCSSCEEEEEEESCGGGCSC-------------------------------HHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred HHhhhhcCCCceEEEECchhhcccC-------------------------------HHHHHHHHHHHcCCCeEEEEEEeC
Confidence 4444 68899999999999999753 347899999999999999999987
Q ss_pred cCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCc-----ccCCCHHHHHHHHHhCCceEEeEEEEee
Q 037735 196 VPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEK-----MYNPTPKELEGIIQRNGNFTIERMEKMT 259 (329)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~-----~y~ps~eE~~~~i~~~g~f~i~~~e~~~ 259 (329)
+.... ....+...|..+ ..+...... .++.+++|+.++++.. ||+++..+.+.
T Consensus 176 ~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~a-Gf~v~~~~~~~ 233 (285)
T 4htf_A 176 AHGLL---------MHNMVAGNFDYV-QAGMPKKKKRTLSPDYPRDPTQVYLWLEEA-GWQIMGKTGVR 233 (285)
T ss_dssp HHHHH---------HHHHHTTCHHHH-HTTCCCC----CCCSCCBCHHHHHHHHHHT-TCEEEEEEEES
T ss_pred CchHH---------HHHHHhcCHHHH-hhhccccccccCCCCCCCCHHHHHHHHHHC-CCceeeeeeEE
Confidence 54310 001111112222 222211111 4667999999999999 59999888764
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.6e-11 Score=112.30 Aligned_cols=161 Identities=15% Similarity=0.197 Sum_probs=106.7
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CCCcceeeeccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQSRSYYAAGVPGSFY 117 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~~~~~f~~gvpgsFy 117 (329)
.+..+|+|+|||+|..+..+.. . .|..+++..|+..+.....-+.+ ......|..+ ++.
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~--------~-------~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~---d~~ 97 (276)
T 3mgg_A 36 PPGAKVLEAGCGIGAQTVILAK--------N-------NPDAEITSIDISPESLEKARENTEKNGIKNVKFLQA---NIF 97 (276)
T ss_dssp CTTCEEEETTCTTSHHHHHHHH--------H-------CTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEEC---CGG
T ss_pred CCCCeEEEecCCCCHHHHHHHH--------h-------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEc---ccc
Confidence 4567999999999999988864 2 24468999999877666544332 1112234443 565
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
...+|++++|+|+++.++||+.+. ..+|+...+.|+|||++++......
T Consensus 98 ~~~~~~~~fD~v~~~~~l~~~~~~-------------------------------~~~l~~~~~~L~pgG~l~~~~~~~~ 146 (276)
T 3mgg_A 98 SLPFEDSSFDHIFVCFVLEHLQSP-------------------------------EEALKSLKKVLKPGGTITVIEGDHG 146 (276)
T ss_dssp GCCSCTTCEEEEEEESCGGGCSCH-------------------------------HHHHHHHHHHEEEEEEEEEEEECGG
T ss_pred cCCCCCCCeeEEEEechhhhcCCH-------------------------------HHHHHHHHHHcCCCcEEEEEEcCCC
Confidence 666889999999999999997543 3789999999999999999886543
Q ss_pred CCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEee
Q 037735 198 DGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMT 259 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~ 259 (329)
+...... ..................| ....+.+++..++++. ||++++++...
T Consensus 147 ~~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~l~~a-Gf~~v~~~~~~ 199 (276)
T 3mgg_A 147 SCYFHPE--GKKAIEAWNCLIRVQAYMK------GNSLVGRQIYPLLQES-GFEKIRVEPRM 199 (276)
T ss_dssp GCEEESC--CHHHHHHHHHHHHHHHHTT------CCTTGGGGHHHHHHHT-TCEEEEEEEEE
T ss_pred CceECCC--cHHHHHHHHHHHHHHHhcC------CCcchHHHHHHHHHHC-CCCeEEEeeEE
Confidence 3211000 0111111111111122223 3345778999999999 49999888653
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.32 E-value=9.3e-12 Score=110.83 Aligned_cols=146 Identities=16% Similarity=0.126 Sum_probs=102.7
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccC
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLF 121 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lf 121 (329)
+..+|||+|||+|..+..+.. . .+ +++..|+........-+..+. .--|..+ ++ +.++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~--------~-------~~--~v~gvD~s~~~~~~a~~~~~~-~v~~~~~---d~-~~~~ 99 (250)
T 2p7i_A 42 RPGNLLELGSFKGDFTSRLQE--------H-------FN--DITCVEASEEAISHAQGRLKD-GITYIHS---RF-EDAQ 99 (250)
T ss_dssp CSSCEEEESCTTSHHHHHHTT--------T-------CS--CEEEEESCHHHHHHHHHHSCS-CEEEEES---CG-GGCC
T ss_pred CCCcEEEECCCCCHHHHHHHH--------h-------CC--cEEEEeCCHHHHHHHHHhhhC-CeEEEEc---cH-HHcC
Confidence 346899999999999887753 1 22 689999988776666555543 2334443 55 3447
Q ss_pred CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHH-HHhccCceEEEEecccCCCC
Q 037735 122 PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRA-QELVPGGLAALVMFSVPDGI 200 (329)
Q Consensus 122 p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra-~eL~pGG~l~~~~~g~~~~~ 200 (329)
|++++|+|+++.++|++.+. ..+|+..+ +.|+|||+|+++.+.....
T Consensus 100 ~~~~fD~v~~~~~l~~~~~~-------------------------------~~~l~~~~~~~LkpgG~l~i~~~~~~~~- 147 (250)
T 2p7i_A 100 LPRRYDNIVLTHVLEHIDDP-------------------------------VALLKRINDDWLAEGGRLFLVCPNANAV- 147 (250)
T ss_dssp CSSCEEEEEEESCGGGCSSH-------------------------------HHHHHHHHHTTEEEEEEEEEEEECTTCH-
T ss_pred cCCcccEEEEhhHHHhhcCH-------------------------------HHHHHHHHHHhcCCCCEEEEEcCChHHH-
Confidence 89999999999999997533 47899999 9999999999998765431
Q ss_pred cccCCcccchHHHHHHHHHHHHhcCCcCCC----------c-ccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 201 PLVNNAAGSFYNTFGSCLVELTKMGILSKE----------K-MYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 201 ~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~----------~-~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
..... . ..|..... . ..+.+.+++.+++++.| |++++.+.+
T Consensus 148 ----------~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~ 199 (250)
T 2p7i_A 148 ----------SRQIA-V-----KMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAG-LQVTYRSGI 199 (250)
T ss_dssp ----------HHHHH-H-----HTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTT-CEEEEEEEE
T ss_pred ----------HHHHH-H-----HcCccccchhcccccccccccccCCHHHHHHHHHHCC-CeEEEEeee
Confidence 10100 0 11222111 0 35579999999999984 999988865
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.5e-11 Score=115.27 Aligned_cols=151 Identities=11% Similarity=0.090 Sum_probs=105.1
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---C-Ccceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---Q-SRSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~-~~~~f~~gvpgsF 116 (329)
.+..+|+|+|||+|..+..+.+. + ..+|+..|+........-+.+. - .+.-|..+ ++
T Consensus 116 ~~~~~vLDiGcG~G~~~~~la~~--------~--------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~ 176 (312)
T 3vc1_A 116 GPDDTLVDAGCGRGGSMVMAHRR--------F--------GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVC---NM 176 (312)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHH--------H--------CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC---CT
T ss_pred CCCCEEEEecCCCCHHHHHHHHH--------c--------CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEEC---Ch
Confidence 34579999999999999888752 1 1479999998766555433321 1 12334544 56
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
.+-.+|++++|+|+++.++||+. . ..+|+..++.|+|||++++.....
T Consensus 177 ~~~~~~~~~fD~V~~~~~l~~~~-~-------------------------------~~~l~~~~~~LkpgG~l~~~~~~~ 224 (312)
T 3vc1_A 177 LDTPFDKGAVTASWNNESTMYVD-L-------------------------------HDLFSEHSRFLKVGGRYVTITGCW 224 (312)
T ss_dssp TSCCCCTTCEEEEEEESCGGGSC-H-------------------------------HHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred hcCCCCCCCEeEEEECCchhhCC-H-------------------------------HHHHHHHHHHcCCCcEEEEEEccc
Confidence 55457899999999999999973 2 378999999999999999999876
Q ss_pred CCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEee
Q 037735 197 PDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMT 259 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~ 259 (329)
.+.... ....+..+...+ . ..+++.+++.+++++. ||+++.++.+.
T Consensus 225 ~~~~~~----~~~~~~~~~~~~------~------~~~~s~~~~~~~l~~a-Gf~~~~~~~~~ 270 (312)
T 3vc1_A 225 NPRYGQ----PSKWVSQINAHF------E------CNIHSRREYLRAMADN-RLVPHTIVDLT 270 (312)
T ss_dssp CTTTCS----CCHHHHHHHHHH------T------CCCCBHHHHHHHHHTT-TEEEEEEEECH
T ss_pred cccccc----hhHHHHHHHhhh------c------CCCCCHHHHHHHHHHC-CCEEEEEEeCC
Confidence 653211 011121111111 1 3568999999999988 59999888763
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-11 Score=111.84 Aligned_cols=163 Identities=15% Similarity=0.154 Sum_probs=105.6
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccC
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLF 121 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lf 121 (329)
+..+|||+|||+|..+..+.+ . .+ -+++..|+........-+........|..+ ++..-.+
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~--------~-------~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~---d~~~~~~ 104 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAE--------H-------GA-KKVLGIDLSERMLTEAKRKTTSPVVCYEQK---AIEDIAI 104 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHH--------T-------TC-SEEEEEESCHHHHHHHHHHCCCTTEEEEEC---CGGGCCC
T ss_pred CCCEEEEECCCCCHHHHHHHH--------c-------CC-CEEEEEECCHHHHHHHHHhhccCCeEEEEc---chhhCCC
Confidence 568999999999998888864 1 12 279999998777666555544222334444 5655457
Q ss_pred CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCCc
Q 037735 122 PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIP 201 (329)
Q Consensus 122 p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~ 201 (329)
|++++|+|+++.++||+. |...+|+..++.|+|||++++++..+.....
T Consensus 105 ~~~~fD~v~~~~~l~~~~-------------------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 153 (253)
T 3g5l_A 105 EPDAYNVVLSSLALHYIA-------------------------------SFDDICKKVYINLKSSGSFIFSVEHPVFTAD 153 (253)
T ss_dssp CTTCEEEEEEESCGGGCS-------------------------------CHHHHHHHHHHHEEEEEEEEEEEECHHHHSS
T ss_pred CCCCeEEEEEchhhhhhh-------------------------------hHHHHHHHHHHHcCCCcEEEEEeCCCccccC
Confidence 899999999999999974 3458899999999999999999764321000
Q ss_pred c------cCCcccchHHHHHHHHHHHHhcCCcC-----CCc-ccCCCHHHHHHHHHhCCceEEeEEEEeec
Q 037735 202 L------VNNAAGSFYNTFGSCLVELTKMGILS-----KEK-MYNPTPKELEGIIQRNGNFTIERMEKMTN 260 (329)
Q Consensus 202 ~------~~~~~~~~~~~l~~a~~~l~~eG~i~-----~~~-~y~ps~eE~~~~i~~~g~f~i~~~e~~~~ 260 (329)
. ...+....+ .|.....++... +.. .|.+|.+|+.+++++.| |+++.++...+
T Consensus 154 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~aG-F~~~~~~e~~~ 218 (253)
T 3g5l_A 154 GRQDWYTDETGNKLHW-----PVDRYFNESMRTSHFLGEDVQKYHRTVTTYIQTLLKNG-FQINSVIEPEP 218 (253)
T ss_dssp SSCSCEECSSCCEEEE-----EECCTTCCCEEEEEETTEEEEEECCCHHHHHHHHHHTT-EEEEEEECCCC
T ss_pred ccccceeccCCceEEE-----EeccccccceEEEeeccccCccEecCHHHHHHHHHHcC-CeeeeeecCCC
Confidence 0 000000000 000000111100 011 56679999999999995 99998886544
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.6e-11 Score=108.22 Aligned_cols=145 Identities=14% Similarity=0.131 Sum_probs=105.3
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcceeeeccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSYYAAGVPGSFY 117 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~f~~gvpgsFy 117 (329)
.+..+|+|+|||+|.++..+.... .|..+++..|+........-+.+. ..+-.|..+ ++.
T Consensus 36 ~~~~~vLDiG~G~G~~~~~l~~~~--------------~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~---d~~ 98 (219)
T 3dh0_A 36 KEGMTVLDVGTGAGFYLPYLSKMV--------------GEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKS---EEN 98 (219)
T ss_dssp CTTCEEEESSCTTCTTHHHHHHHH--------------TTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEEC---BTT
T ss_pred CCCCEEEEEecCCCHHHHHHHHHh--------------CCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEec---ccc
Confidence 345799999999999999987522 345689999998776655544331 112234443 565
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
...++++++|+|+++.++||+.+ ...+|+..++.|+|||.+++..+...
T Consensus 99 ~~~~~~~~fD~v~~~~~l~~~~~-------------------------------~~~~l~~~~~~LkpgG~l~i~~~~~~ 147 (219)
T 3dh0_A 99 KIPLPDNTVDFIFMAFTFHELSE-------------------------------PLKFLEELKRVAKPFAYLAIIDWKKE 147 (219)
T ss_dssp BCSSCSSCEEEEEEESCGGGCSS-------------------------------HHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred cCCCCCCCeeEEEeehhhhhcCC-------------------------------HHHHHHHHHHHhCCCeEEEEEEeccc
Confidence 55588999999999999999743 34789999999999999999987765
Q ss_pred CCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEeec
Q 037735 198 DGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMTN 260 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~~ 260 (329)
...... . .....+.+++...+++.| |++++......
T Consensus 148 ~~~~~~---------------------~-----~~~~~~~~~~~~~l~~~G-f~~~~~~~~~~ 183 (219)
T 3dh0_A 148 ERDKGP---------------------P-----PEEVYSEWEVGLILEDAG-IRVGRVVEVGK 183 (219)
T ss_dssp CCSSSC---------------------C-----GGGSCCHHHHHHHHHHTT-CEEEEEEEETT
T ss_pred ccccCC---------------------c-----hhcccCHHHHHHHHHHCC-CEEEEEEeeCC
Confidence 432100 0 034568999999999995 99988776543
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.8e-11 Score=108.06 Aligned_cols=149 Identities=15% Similarity=0.188 Sum_probs=104.7
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeecccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~l 120 (329)
++..+|+|+|||+|.++..+.. . ..+++..|+........-+.....+..|..+ ++.+..
T Consensus 52 ~~~~~vLDiG~G~G~~~~~l~~--------~---------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~---d~~~~~ 111 (242)
T 3l8d_A 52 KKEAEVLDVGCGDGYGTYKLSR--------T---------GYKAVGVDISEVMIQKGKERGEGPDLSFIKG---DLSSLP 111 (242)
T ss_dssp CTTCEEEEETCTTSHHHHHHHH--------T---------TCEEEEEESCHHHHHHHHTTTCBTTEEEEEC---BTTBCS
T ss_pred CCCCeEEEEcCCCCHHHHHHHH--------c---------CCeEEEEECCHHHHHHHHhhcccCCceEEEc---chhcCC
Confidence 3457999999999999988864 1 1479999998766665544432222334444 565555
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCC
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGI 200 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~ 200 (329)
+|++++|+|+++.++||+.+ ...+|+..++.|+|||+++++.+++....
T Consensus 112 ~~~~~fD~v~~~~~l~~~~~-------------------------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~~ 160 (242)
T 3l8d_A 112 FENEQFEAIMAINSLEWTEE-------------------------------PLRALNEIKRVLKSDGYACIAILGPTAKP 160 (242)
T ss_dssp SCTTCEEEEEEESCTTSSSC-------------------------------HHHHHHHHHHHEEEEEEEEEEEECTTCGG
T ss_pred CCCCCccEEEEcChHhhccC-------------------------------HHHHHHHHHHHhCCCeEEEEEEcCCcchh
Confidence 78999999999999999743 34789999999999999999998766432
Q ss_pred cccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 201 PLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 201 ~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
... .+ ..+..... .....+++++..++++. +|++++.+.+
T Consensus 161 ~~~------~~-------~~~~~~~~----~~~~~~~~~~~~~l~~~-Gf~~~~~~~~ 200 (242)
T 3l8d_A 161 REN------SY-------PRLYGKDV----VCNTMMPWEFEQLVKEQ-GFKVVDGIGV 200 (242)
T ss_dssp GGG------GG-------GGGGTCCC----SSCCCCHHHHHHHHHHT-TEEEEEEEEE
T ss_pred hhh------hh-------hhhccccc----cccCCCHHHHHHHHHHc-CCEEEEeecc
Confidence 110 00 11111110 04557899999999998 4999988765
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.1e-11 Score=111.47 Aligned_cols=159 Identities=16% Similarity=0.205 Sum_probs=104.9
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---C-cceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---S-RSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~-~~~f~~gvpgsF 116 (329)
.+..+|+|+|||||..|..+.+ ++. .|..+|+..|+...+....-+.+.. . +--|+.| ++
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~--------~~~-----~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~---D~ 132 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRR--------NIH-----HDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEG---DI 132 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHH--------TCC-----SSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEES---CT
T ss_pred CCCCEEEEEeCCCCHHHHHHHH--------hcC-----CCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeec---cc
Confidence 3457999999999999988875 211 3557899999998887765444321 1 2235554 45
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
.+ +|.+++|+++|+++|||+.. .|...+|+..++.|+|||+|+++-...
T Consensus 133 ~~--~~~~~~d~v~~~~~l~~~~~-----------------------------~~~~~~l~~i~~~LkpGG~lii~e~~~ 181 (261)
T 4gek_A 133 RD--IAIENASMVVLNFTLQFLEP-----------------------------SERQALLDKIYQGLNPGGALVLSEKFS 181 (261)
T ss_dssp TT--CCCCSEEEEEEESCGGGSCH-----------------------------HHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred cc--ccccccccceeeeeeeecCc-----------------------------hhHhHHHHHHHHHcCCCcEEEEEeccC
Confidence 33 35567999999999999742 245578999999999999999987654
Q ss_pred CCCCcccCCcccchHHHHHHHHHHHH-hcCCcCCCc----------ccCCCHHHHHHHHHhCCceEEeEE
Q 037735 197 PDGIPLVNNAAGSFYNTFGSCLVELT-KMGILSKEK----------MYNPTPKELEGIIQRNGNFTIERM 255 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~l~~a~~~l~-~eG~i~~~~----------~y~ps~eE~~~~i~~~g~f~i~~~ 255 (329)
..... ..+.+...+.+.. ..|.-..+- +...|.+|+.+.+++.| |+.+.+
T Consensus 182 ~~~~~--------~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s~~~~~~~L~~AG-F~~ve~ 242 (261)
T 4gek_A 182 FEDAK--------VGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAG-FEHSEL 242 (261)
T ss_dssp CSSHH--------HHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBCHHHHHHHHHHHT-CSEEEE
T ss_pred CCCHH--------HHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCCHHHHHHHHHHcC-CCeEEE
Confidence 43211 1222333333332 234322221 34468999999999985 876543
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.2e-10 Score=109.05 Aligned_cols=161 Identities=12% Similarity=0.147 Sum_probs=103.5
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC----Ccceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ----SRSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~----~~~~f~~gvpgsF 116 (329)
.+..+|+|+|||+|..+..+.+ .+ ..+|+..|+........-+.+.. ...-+..+ ++
T Consensus 89 ~~~~~vLDiGcG~G~~~~~la~--------~~--------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~ 149 (318)
T 2fk8_A 89 KPGMTLLDIGCGWGTTMRRAVE--------RF--------DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQ---GW 149 (318)
T ss_dssp CTTCEEEEESCTTSHHHHHHHH--------HH--------CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEES---CG
T ss_pred CCcCEEEEEcccchHHHHHHHH--------HC--------CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEC---Ch
Confidence 3457999999999999888875 21 14799999987776655443321 11234443 44
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
..+ | +++|+|+|+.++|++.. .|...+|+...+.|+|||++++..+..
T Consensus 150 -~~~-~-~~fD~v~~~~~l~~~~~-----------------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~ 197 (318)
T 2fk8_A 150 -EDF-A-EPVDRIVSIEAFEHFGH-----------------------------ENYDDFFKRCFNIMPADGRMTVQSSVS 197 (318)
T ss_dssp -GGC-C-CCCSEEEEESCGGGTCG-----------------------------GGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred -HHC-C-CCcCEEEEeChHHhcCH-----------------------------HHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 222 4 89999999999999742 256688999999999999999999987
Q ss_pred CCCCcccCCcccchHH--HHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEee
Q 037735 197 PDGIPLVNNAAGSFYN--TFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMT 259 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~--~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~ 259 (329)
.+............+. ....-+....-.| .++|+.+++.+.+++. +|++++.+.+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~s~~~~~~~l~~a-Gf~~~~~~~~~ 255 (318)
T 2fk8_A 198 YHPYEMAARGKKLSFETARFIKFIVTEIFPG------GRLPSTEMMVEHGEKA-GFTVPEPLSLR 255 (318)
T ss_dssp CCHHHHHTTCHHHHHHHHHHHHHHHHHTSTT------CCCCCHHHHHHHHHHT-TCBCCCCEECH
T ss_pred CCchhhhhccccccccccchhhHHHHhcCCC------CcCCCHHHHHHHHHhC-CCEEEEEEecc
Confidence 6522110000000000 0111111111122 4668999999999998 49998777653
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.7e-11 Score=108.37 Aligned_cols=139 Identities=14% Similarity=0.162 Sum_probs=103.3
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC----cceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS----RSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~----~~~f~~gvpgsFy 117 (329)
++.+|||+|||+|.++..+.. +..+|+..|+........-+.+... +--|..+ ++.
T Consensus 66 ~~~~vLDiGcG~G~~~~~l~~-----------------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~~ 125 (235)
T 3lcc_A 66 PLGRALVPGCGGGHDVVAMAS-----------------PERFVVGLDISESALAKANETYGSSPKAEYFSFVKE---DVF 125 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHCB-----------------TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECC---CTT
T ss_pred CCCCEEEeCCCCCHHHHHHHh-----------------CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEEC---chh
Confidence 346999999999999887742 2368999999887766665554331 1234443 563
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
.+.|++++|+|+++.++||+.. .|...+|+..++.|+|||+|++..+...
T Consensus 126 -~~~~~~~fD~v~~~~~l~~~~~-----------------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 175 (235)
T 3lcc_A 126 -TWRPTELFDLIFDYVFFCAIEP-----------------------------EMRPAWAKSMYELLKPDGELITLMYPIT 175 (235)
T ss_dssp -TCCCSSCEEEEEEESSTTTSCG-----------------------------GGHHHHHHHHHHHEEEEEEEEEEECCCS
T ss_pred -cCCCCCCeeEEEEChhhhcCCH-----------------------------HHHHHHHHHHHHHCCCCcEEEEEEeccc
Confidence 4557889999999999999741 2556889999999999999999887655
Q ss_pred CCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEee
Q 037735 198 DGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMT 259 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~ 259 (329)
.... |. .|..+.+++.+++++. +|+++.++...
T Consensus 176 ~~~~-----------------------~~-----~~~~~~~~~~~~l~~~-Gf~~~~~~~~~ 208 (235)
T 3lcc_A 176 DHVG-----------------------GP-----PYKVDVSTFEEVLVPI-GFKAVSVEENP 208 (235)
T ss_dssp CCCS-----------------------CS-----SCCCCHHHHHHHHGGG-TEEEEEEEECT
T ss_pred ccCC-----------------------CC-----CccCCHHHHHHHHHHc-CCeEEEEEecC
Confidence 3210 11 4557899999999988 49999988764
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.7e-11 Score=104.75 Aligned_cols=142 Identities=16% Similarity=0.108 Sum_probs=105.7
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccCC
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLFP 122 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lfp 122 (329)
..+|+|+|||+|.++..+.. . ..+++..|+...+....-+..+. .-|.. +++.+-.+|
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~--------~---------~~~v~gvD~s~~~~~~a~~~~~~--~~~~~---~d~~~~~~~ 99 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLAS--------L---------GHQIEGLEPATRLVELARQTHPS--VTFHH---GTITDLSDS 99 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHH--------T---------TCCEEEECCCHHHHHHHHHHCTT--SEEEC---CCGGGGGGS
T ss_pred CCeEEEecCCCCHHHHHHHh--------c---------CCeEEEEeCCHHHHHHHHHhCCC--CeEEe---CcccccccC
Confidence 57899999999999888864 1 14799999987776665554432 23444 356554578
Q ss_pred CCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCCcc
Q 037735 123 KSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPL 202 (329)
Q Consensus 123 ~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~ 202 (329)
++++|+|+++.++||+.. .|...+|+..++.|+|||+++++.+..+.....
T Consensus 100 ~~~fD~v~~~~~l~~~~~-----------------------------~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~ 150 (203)
T 3h2b_A 100 PKRWAGLLAWYSLIHMGP-----------------------------GELPDALVALRMAVEDGGGLLMSFFSGPSLEPM 150 (203)
T ss_dssp CCCEEEEEEESSSTTCCT-----------------------------TTHHHHHHHHHHTEEEEEEEEEEEECCSSCEEE
T ss_pred CCCeEEEEehhhHhcCCH-----------------------------HHHHHHHHHHHHHcCCCcEEEEEEccCCchhhh
Confidence 899999999999999752 255688999999999999999999877653221
Q ss_pred cCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEee
Q 037735 203 VNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMT 259 (329)
Q Consensus 203 ~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~ 259 (329)
... ... .++.+.+++.+++++.| |+++.++...
T Consensus 151 ~~~-----------------~~~------~~~~~~~~~~~~l~~~G-f~~~~~~~~~ 183 (203)
T 3h2b_A 151 YHP-----------------VAT------AYRWPLPELAQALETAG-FQVTSSHWDP 183 (203)
T ss_dssp CCS-----------------SSC------EEECCHHHHHHHHHHTT-EEEEEEEECT
T ss_pred hch-----------------hhh------hccCCHHHHHHHHHHCC-CcEEEEEecC
Confidence 100 001 56689999999999984 9999988764
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=4.9e-11 Score=104.45 Aligned_cols=152 Identities=13% Similarity=0.070 Sum_probs=101.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccC
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLF 121 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lf 121 (329)
...+|+|+|||+|.++..+... ..+++..|+........-+ ....+..|..+ ++.. ++
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~-----------------~~~v~~~D~s~~~~~~a~~-~~~~~~~~~~~---d~~~-~~ 103 (218)
T 3ou2_A 46 IRGDVLELASGTGYWTRHLSGL-----------------ADRVTALDGSAEMIAEAGR-HGLDNVEFRQQ---DLFD-WT 103 (218)
T ss_dssp SCSEEEEESCTTSHHHHHHHHH-----------------SSEEEEEESCHHHHHHHGG-GCCTTEEEEEC---CTTS-CC
T ss_pred CCCeEEEECCCCCHHHHHHHhc-----------------CCeEEEEeCCHHHHHHHHh-cCCCCeEEEec---cccc-CC
Confidence 3459999999999999888641 1479999998766555544 22112334443 5643 48
Q ss_pred CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCCc
Q 037735 122 PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIP 201 (329)
Q Consensus 122 p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~ 201 (329)
|++++|+|+++.++||+.+ .++..+|+..++.|+|||.++++.++++....
T Consensus 104 ~~~~~D~v~~~~~l~~~~~-----------------------------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~ 154 (218)
T 3ou2_A 104 PDRQWDAVFFAHWLAHVPD-----------------------------DRFEAFWESVRSAVAPGGVVEFVDVTDHERRL 154 (218)
T ss_dssp CSSCEEEEEEESCGGGSCH-----------------------------HHHHHHHHHHHHHEEEEEEEEEEEECCCC---
T ss_pred CCCceeEEEEechhhcCCH-----------------------------HHHHHHHHHHHHHcCCCeEEEEEeCCCCcccc
Confidence 9999999999999999653 13558899999999999999999998753211
Q ss_pred ccCCcccchHHHHHHHHHHHHhc---CCcCCCc-----ccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 202 LVNNAAGSFYNTFGSCLVELTKM---GILSKEK-----MYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 202 ~~~~~~~~~~~~l~~a~~~l~~e---G~i~~~~-----~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
. ..+...... ..+.... ..+++++|+.++++.. +|+++..+..
T Consensus 155 ~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a-Gf~v~~~~~~ 205 (218)
T 3ou2_A 155 E-------------QQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTAL-GWSCSVDEVH 205 (218)
T ss_dssp ----------------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHT-TEEEEEEEEE
T ss_pred c-------------hhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHC-CCEEEeeecc
Confidence 0 000100000 1111111 2367999999999998 4998777654
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.9e-11 Score=106.78 Aligned_cols=141 Identities=9% Similarity=0.084 Sum_probs=99.1
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---------------Cc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---------------SR 105 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---------------~~ 105 (329)
++..+|||+|||+|.++..+.+ + ..+|+..|+...+.....+.... .+
T Consensus 21 ~~~~~vLD~GCG~G~~~~~la~--------~---------g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 83 (203)
T 1pjz_A 21 VPGARVLVPLCGKSQDMSWLSG--------Q---------GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPG 83 (203)
T ss_dssp CTTCEEEETTTCCSHHHHHHHH--------H---------CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSS
T ss_pred CCCCEEEEeCCCCcHhHHHHHH--------C---------CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCc
Confidence 3457999999999999998864 1 15899999999887776554321 12
Q ss_pred ceeeeccccccccccCCC-CceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhc
Q 037735 106 SYYAAGVPGSFYSSLFPK-SSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELV 184 (329)
Q Consensus 106 ~~f~~gvpgsFy~~lfp~-~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~ 184 (329)
--|..| ++.+-.+++ +++|+|++..++|++.. .|...+++..++.|+
T Consensus 84 v~~~~~---d~~~l~~~~~~~fD~v~~~~~l~~l~~-----------------------------~~~~~~l~~~~r~Lk 131 (203)
T 1pjz_A 84 IEIWCG---DFFALTARDIGHCAAFYDRAAMIALPA-----------------------------DMRERYVQHLEALMP 131 (203)
T ss_dssp SEEEEE---CCSSSTHHHHHSEEEEEEESCGGGSCH-----------------------------HHHHHHHHHHHHHSC
T ss_pred cEEEEC---ccccCCcccCCCEEEEEECcchhhCCH-----------------------------HHHHHHHHHHHHHcC
Confidence 234444 565444554 79999999999999641 144578999999999
Q ss_pred cCceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEee
Q 037735 185 PGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMT 259 (329)
Q Consensus 185 pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~ 259 (329)
|||++++.++..+... ..|. .+..+.+|+.+.++. +|++..++...
T Consensus 132 pgG~~~l~~~~~~~~~----------------------~~~~-----~~~~~~~el~~~~~~--gf~i~~~~~~~ 177 (203)
T 1pjz_A 132 QACSGLLITLEYDQAL----------------------LEGP-----PFSVPQTWLHRVMSG--NWEVTKVGGQD 177 (203)
T ss_dssp SEEEEEEEEESSCSSS----------------------SSSC-----CCCCCHHHHHHTSCS--SEEEEEEEESS
T ss_pred CCcEEEEEEEecCccc----------------------cCCC-----CCCCCHHHHHHHhcC--CcEEEEecccc
Confidence 9999666654432110 0010 344689999999886 59998888754
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.24 E-value=8.9e-11 Score=109.66 Aligned_cols=166 Identities=11% Similarity=0.016 Sum_probs=110.5
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC----cceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS----RSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~----~~~f~~gvpgsF 116 (329)
.+..+|+|+|||+|..+..+... . .|..+|+..|+........-+.+... +--|+. +++
T Consensus 117 ~~~~~vLDiGcG~G~~~~~la~~-------~-------~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~---~d~ 179 (305)
T 3ocj_A 117 RPGCVVASVPCGWMSELLALDYS-------A-------CPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHR---QDA 179 (305)
T ss_dssp CTTCEEEETTCTTCHHHHTSCCT-------T-------CTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEE---CCG
T ss_pred CCCCEEEEecCCCCHHHHHHHHh-------c-------CCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEE---Cch
Confidence 44678999999999988877410 1 45579999999877766655544321 123444 467
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
.+-.++ +++|+|+++.++||+.+.. ....+|+..++.|+|||+++++.+++
T Consensus 180 ~~~~~~-~~fD~v~~~~~~~~~~~~~----------------------------~~~~~l~~~~~~LkpgG~l~i~~~~~ 230 (305)
T 3ocj_A 180 WKLDTR-EGYDLLTSNGLNIYEPDDA----------------------------RVTELYRRFWQALKPGGALVTSFLTP 230 (305)
T ss_dssp GGCCCC-SCEEEEECCSSGGGCCCHH----------------------------HHHHHHHHHHHHEEEEEEEEEECCCC
T ss_pred hcCCcc-CCeEEEEECChhhhcCCHH----------------------------HHHHHHHHHHHhcCCCeEEEEEecCC
Confidence 555566 9999999999999965422 23368999999999999999999887
Q ss_pred CCCCcccCC-----cccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 197 PDGIPLVNN-----AAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 197 ~~~~~~~~~-----~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
+........ ............+......+. ..+.+.+|+.+.+++.| |++++++..
T Consensus 231 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~aG-F~~v~~~~~ 291 (305)
T 3ocj_A 231 PPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRW-----NALRTHAQTRAQLEEAG-FTDLRFEDD 291 (305)
T ss_dssp CTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSC-----CCCCCHHHHHHHHHHTT-CEEEEEECC
T ss_pred CCcccccccceeeccccchhhhhhhHHHHHHhhhh-----hccCCHHHHHHHHHHCC-CEEEEEEcc
Confidence 653321111 000111122223333333331 35689999999999995 999888753
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.23 E-value=8.8e-11 Score=105.87 Aligned_cols=149 Identities=13% Similarity=-0.017 Sum_probs=100.5
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---C-Ccceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---Q-SRSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~-~~~~f~~gvpgsF 116 (329)
.+..+|+|+|||+|..+..+.. .+ ..+++..|+...+....-+... . .+.-|.. +++
T Consensus 35 ~~~~~VLDiGcG~G~~~~~la~--------~~--------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~---~d~ 95 (256)
T 1nkv_A 35 KPGTRILDLGSGSGEMLCTWAR--------DH--------GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIH---NDA 95 (256)
T ss_dssp CTTCEEEEETCTTCHHHHHHHH--------HT--------CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE---SCC
T ss_pred CCCCEEEEECCCCCHHHHHHHH--------hc--------CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEE---CCh
Confidence 3457999999999999988875 21 1478999998766655433321 1 1223444 466
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
.+-.+ ++++|+|+|..++|++.+.+ .+|+..++.|+|||+|+++.+..
T Consensus 96 ~~~~~-~~~fD~V~~~~~~~~~~~~~-------------------------------~~l~~~~r~LkpgG~l~~~~~~~ 143 (256)
T 1nkv_A 96 AGYVA-NEKCDVAACVGATWIAGGFA-------------------------------GAEELLAQSLKPGGIMLIGEPYW 143 (256)
T ss_dssp TTCCC-SSCEEEEEEESCGGGTSSSH-------------------------------HHHHHHTTSEEEEEEEEEEEEEE
T ss_pred HhCCc-CCCCCEEEECCChHhcCCHH-------------------------------HHHHHHHHHcCCCeEEEEecCcc
Confidence 44334 88999999999999976543 77999999999999999987654
Q ss_pred CCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 197 PDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
...... ..+...| ......++++.+++.+.+++.| |+++.+...
T Consensus 144 ~~~~~~---------~~~~~~~--------~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~ 187 (256)
T 1nkv_A 144 RQLPAT---------EEIAQAC--------GVSSTSDFLTLPGLVGAFDDLG-YDVVEMVLA 187 (256)
T ss_dssp TTCCSS---------HHHHHTT--------TCSCGGGSCCHHHHHHHHHTTT-BCCCEEEEC
T ss_pred cCCCCh---------HHHHHHH--------hcccccccCCHHHHHHHHHHCC-CeeEEEEeC
Confidence 332111 0111111 1111146789999999999885 998776654
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.23 E-value=5.4e-11 Score=110.58 Aligned_cols=198 Identities=15% Similarity=0.134 Sum_probs=121.4
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC-----CCcceeeeccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP-----QSRSYYAAGVPGS 115 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~-----~~~~~f~~gvpgs 115 (329)
.+..+|+|+|||+|..+..+.+ .+ .+..+|+..|+........-+.+. ..+--|..+ +
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~--------~~------~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~---d 97 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQ--------EL------KPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKIS---S 97 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHH--------HS------SCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEEC---C
T ss_pred CCCCEEEEECCCCCHHHHHHHH--------hC------CCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEc---C
Confidence 3568999999999999998875 21 234689999998777665544321 112334444 4
Q ss_pred cccccCCC------CceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceE
Q 037735 116 FYSSLFPK------SSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLA 189 (329)
Q Consensus 116 Fy~~lfp~------~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l 189 (329)
+.+-.++. +++|+|+++.++||+ +. ..+|+..++.|+|||.|
T Consensus 98 ~~~~~~~~~~~~~~~~fD~V~~~~~l~~~-~~-------------------------------~~~l~~~~~~LkpgG~l 145 (299)
T 3g5t_A 98 SDDFKFLGADSVDKQKIDMITAVECAHWF-DF-------------------------------EKFQRSAYANLRKDGTI 145 (299)
T ss_dssp TTCCGGGCTTTTTSSCEEEEEEESCGGGS-CH-------------------------------HHHHHHHHHHEEEEEEE
T ss_pred HHhCCccccccccCCCeeEEeHhhHHHHh-CH-------------------------------HHHHHHHHHhcCCCcEE
Confidence 54444666 899999999999998 43 37899999999999999
Q ss_pred EEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccC--CCHHHHHHHHHhCCce-----EEeEEEEeecC-
Q 037735 190 ALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYN--PTPKELEGIIQRNGNF-----TIERMEKMTNP- 261 (329)
Q Consensus 190 ~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~--ps~eE~~~~i~~~g~f-----~i~~~e~~~~~- 261 (329)
++..++.+...... .+...+..+....- .-..|. |..+.+.+.+++.| | +-++...+.+.
T Consensus 146 ~i~~~~~~~~~~~~---------~~~~~~~~~~~~~~--~~~~~w~~p~~~~~~~~l~~~g-fp~~~f~~v~~~~~~~~~ 213 (299)
T 3g5t_A 146 AIWGYADPIFPDYP---------EFDDLMIEVPYGKQ--GLGPYWEQPGRSRLRNMLKDSH-LDPELFHDIQVSYFCAED 213 (299)
T ss_dssp EEEEEEEEECTTCG---------GGTTHHHHHHHCTT--TTGGGSCTTHHHHHHTTTTTCC-CCTTTEEEEEEEEECGGG
T ss_pred EEEecCCccccCcH---------HHHHHHHHhccCcc--cccchhhchhhHHHHHhhhccC-CChHHcCcceEEEecccc
Confidence 99777643221100 11122233321100 001455 78888888888775 5 44444444321
Q ss_pred cc---------------cccccHHHHhhhHhhhhhh-HHhh--hcCh--HHHHHHHHH
Q 037735 262 KQ---------------QVLCSASDLAVAMRAVYEG-LVKE--HFGD--EFVDKIFNH 299 (329)
Q Consensus 262 ~~---------------~~~~~~~~~~~~iRa~~e~-~~~~--~~g~--~~~d~~f~r 299 (329)
|. ...++...+..++|+++.- .... .-++ ++++++.++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t~s~~~~~~~~~~~~~~~~~~~~~~~~ 271 (299)
T 3g5t_A 214 VRDKVKLHQHTKKPLLIRKQVTLVEFADYVRTWSAYHQWKQDPKNKDKEDVADWFIKE 271 (299)
T ss_dssp GGCHHHHHHCSSCCCCCEEEECHHHHHHHHTTSHHHHHHHHCGGGTTSCCHHHHHHHH
T ss_pred cccccccccCCCCceeeeccccHHHHHHHHHHhHHHHHHHhcccCCchhhHHHHHHHH
Confidence 11 1123567888999987642 1122 2233 677776665
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.21 E-value=9.7e-11 Score=113.43 Aligned_cols=150 Identities=17% Similarity=0.154 Sum_probs=101.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC-----------CCCcceeee
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL-----------PQSRSYYAA 110 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l-----------~~~~~~f~~ 110 (329)
+..+|||+|||+|..+..+.+.. .|..+|+..|+...+....-+.+ ...+--|..
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~--------------~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~ 148 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLV--------------GEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLK 148 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHH--------------TTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEE
T ss_pred CCCEEEEecCccCHHHHHHHHHh--------------CCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEE
Confidence 45799999999999998887522 24468999999877766554432 112233555
Q ss_pred ccccccccc------cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhc
Q 037735 111 GVPGSFYSS------LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELV 184 (329)
Q Consensus 111 gvpgsFy~~------lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~ 184 (329)
+ ++.+- .+|++++|+|+|+.++||+.+ ...+|+..++.|+
T Consensus 149 ~---d~~~l~~~~~~~~~~~~fD~V~~~~~l~~~~d-------------------------------~~~~l~~~~r~Lk 194 (383)
T 4fsd_A 149 G---FIENLATAEPEGVPDSSVDIVISNCVCNLSTN-------------------------------KLALFKEIHRVLR 194 (383)
T ss_dssp S---CTTCGGGCBSCCCCTTCEEEEEEESCGGGCSC-------------------------------HHHHHHHHHHHEE
T ss_pred c---cHHHhhhcccCCCCCCCEEEEEEccchhcCCC-------------------------------HHHHHHHHHHHcC
Confidence 4 45433 678999999999999999653 3488999999999
Q ss_pred cCceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEE
Q 037735 185 PGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERME 256 (329)
Q Consensus 185 pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e 256 (329)
|||+|+++.+..+..... .+.. ...+..... ....+.+++.+++++.| |++.++.
T Consensus 195 pgG~l~i~~~~~~~~~~~----------~~~~-~~~~~~~~~-----~~~~~~~~~~~ll~~aG-F~~v~~~ 249 (383)
T 4fsd_A 195 DGGELYFSDVYADRRLSE----------AAQQ-DPILYGECL-----GGALYLEDFRRLVAEAG-FRDVRLV 249 (383)
T ss_dssp EEEEEEEEEEEESSCCCH----------HHHH-CHHHHHTTC-----TTCCBHHHHHHHHHHTT-CCCEEEE
T ss_pred CCCEEEEEEeccccccCH----------hHhh-hHHHhhccc-----ccCCCHHHHHHHHHHCC-CceEEEE
Confidence 999999998876542211 0000 011111111 23457799999998885 8765443
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.4e-11 Score=106.04 Aligned_cols=149 Identities=14% Similarity=0.131 Sum_probs=103.2
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeecccccccc--
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYS-- 118 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~-- 118 (329)
.+..+|+|+|||+|..+..+.. .+ .+++..|+........-+... -+..+ ++..
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~----------------~~-~~~~~~D~~~~~~~~~~~~~~----~~~~~---d~~~~~ 86 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKE----------------NG-TRVSGIEAFPEAAEQAKEKLD----HVVLG---DIETMD 86 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHT----------------TT-CEEEEEESSHHHHHHHHTTSS----EEEES---CTTTCC
T ss_pred cCCCcEEEeCCCCCHHHHHHHh----------------cC-CeEEEEeCCHHHHHHHHHhCC----cEEEc---chhhcC
Confidence 3467999999999999988763 22 589999998766555443332 23333 4433
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCC
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
..+|++++|+|+++.++|++.+. ..+|+...+.|+|||.++++++....
T Consensus 87 ~~~~~~~fD~v~~~~~l~~~~~~-------------------------------~~~l~~~~~~L~~gG~l~~~~~~~~~ 135 (230)
T 3cc8_A 87 MPYEEEQFDCVIFGDVLEHLFDP-------------------------------WAVIEKVKPYIKQNGVILASIPNVSH 135 (230)
T ss_dssp CCSCTTCEEEEEEESCGGGSSCH-------------------------------HHHHHHTGGGEEEEEEEEEEEECTTS
T ss_pred CCCCCCccCEEEECChhhhcCCH-------------------------------HHHHHHHHHHcCCCCEEEEEeCCcch
Confidence 44678999999999999997532 37899999999999999999866443
Q ss_pred CCcccCCcccchHHHHHHHHHHHHhc-------CCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEeecC
Q 037735 199 GIPLVNNAAGSFYNTFGSCLVELTKM-------GILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMTNP 261 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~a~~~l~~e-------G~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~~~ 261 (329)
. ..+ ..+... |.++.....+.+.+++.+++++.| |++++.+.....
T Consensus 136 ~------------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~~~ 188 (230)
T 3cc8_A 136 I------------SVL----APLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAG-YSISKVDRVYVD 188 (230)
T ss_dssp H------------HHH----HHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTT-EEEEEEEEEECC
T ss_pred H------------HHH----HHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcC-CeEEEEEecccC
Confidence 1 111 111111 111111146679999999999994 999998877543
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.20 E-value=3.2e-11 Score=108.52 Aligned_cols=146 Identities=14% Similarity=0.154 Sum_probs=102.9
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC-cceeeeccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS-RSYYAAGVPGSFYSS 119 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~-~~~f~~gvpgsFy~~ 119 (329)
.+..+|+|+|||+|..+..+.... ..+++..|+...+....-+.+... ..-|.. +++..-
T Consensus 92 ~~~~~vLDiG~G~G~~~~~l~~~~----------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~---~d~~~~ 152 (254)
T 1xtp_A 92 HGTSRALDCGAGIGRITKNLLTKL----------------YATTDLLEPVKHMLEEAKRELAGMPVGKFIL---ASMETA 152 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHH----------------CSEEEEEESCHHHHHHHHHHTTTSSEEEEEE---SCGGGC
T ss_pred cCCCEEEEECCCcCHHHHHHHHhh----------------cCEEEEEeCCHHHHHHHHHHhccCCceEEEE---ccHHHC
Confidence 356899999999999998887521 136899999877766655554321 123444 356554
Q ss_pred cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCC
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDG 199 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~ 199 (329)
.+|++++|+|+++.++|++++ .|+..+|+..++.|+|||+++++.......
T Consensus 153 ~~~~~~fD~v~~~~~l~~~~~-----------------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 203 (254)
T 1xtp_A 153 TLPPNTYDLIVIQWTAIYLTD-----------------------------ADFVKFFKHCQQALTPNGYIFFKENCSTGD 203 (254)
T ss_dssp CCCSSCEEEEEEESCGGGSCH-----------------------------HHHHHHHHHHHHHEEEEEEEEEEEEBC--C
T ss_pred CCCCCCeEEEEEcchhhhCCH-----------------------------HHHHHHHHHHHHhcCCCeEEEEEecCCCcc
Confidence 578899999999999999742 256688999999999999999998643321
Q ss_pred CcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 200 IPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 200 ~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
... . . ...+ .++++.+++.+++++.| |++++.+..
T Consensus 204 ~~~--------~-------~--~~~~------~~~~~~~~~~~~l~~aG-f~~~~~~~~ 238 (254)
T 1xtp_A 204 RFL--------V-------D--KEDS------SLTRSDIHYKRLFNESG-VRVVKEAFQ 238 (254)
T ss_dssp CEE--------E-------E--TTTT------EEEBCHHHHHHHHHHHT-CCEEEEEEC
T ss_pred cce--------e-------c--ccCC------cccCCHHHHHHHHHHCC-CEEEEeeec
Confidence 110 0 0 0011 45679999999999984 999887764
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.8e-10 Score=106.86 Aligned_cols=157 Identities=13% Similarity=0.106 Sum_probs=103.7
Q ss_pred CceEEEeeeCCC---CcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC-cceeeeccccccc
Q 037735 42 NTFRIADFGCST---GPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS-RSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCst---G~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~-~~~f~~gvpgsFy 117 (329)
...+|||+|||+ |..+..+.. . .|..+|+..|+...+....-+.+... +--|+.| ++.
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~--------~-------~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~---D~~ 138 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQS--------V-------NPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTA---DVR 138 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHH--------H-------CTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEEC---CTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHH--------h-------CCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEe---eCC
Confidence 347999999999 965443321 2 35579999999877766655444321 2335554 554
Q ss_pred c-----------ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccC
Q 037735 118 S-----------SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPG 186 (329)
Q Consensus 118 ~-----------~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pG 186 (329)
+ ..++.+++|+++++.+|||+++- |...+|+..++.|+||
T Consensus 139 ~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~-----------------------------~~~~~l~~~~~~L~pG 189 (274)
T 2qe6_A 139 DPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPD-----------------------------VVDRVVGAYRDALAPG 189 (274)
T ss_dssp CHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTT-----------------------------THHHHHHHHHHHSCTT
T ss_pred CchhhhccchhhccCCCCCCEEEEEechhhhCCcH-----------------------------HHHHHHHHHHHhCCCC
Confidence 2 23555689999999999998642 2457899999999999
Q ss_pred ceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEeecC-ccc
Q 037735 187 GLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMTNP-KQQ 264 (329)
Q Consensus 187 G~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~~~-~~~ 264 (329)
|+|+++.+..+. .. .+..+...+... ..+ .++++.+|+.+.+ . +|++......... |..
T Consensus 190 G~l~i~~~~~~~-~~--------~~~~~~~~~~~~-~~~------~~~~s~~ei~~~l--~-G~~l~~~g~~~~~~w~p 249 (274)
T 2qe6_A 190 SYLFMTSLVDTG-LP--------AQQKLARITREN-LGE------GWARTPEEIERQF--G-DFELVEPGVVYTALWRP 249 (274)
T ss_dssp CEEEEEEEBCSS-CH--------HHHHHHHHHHHH-HSC------CCCBCHHHHHHTT--T-TCEECTTCSEEGGGSSC
T ss_pred cEEEEEEecCcc-hH--------HHHHHHHHHHhc-CCC------CccCCHHHHHHHh--C-CCeEccCcEeccccccC
Confidence 999999988643 11 122233333322 223 5678999999998 3 5988764433333 543
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-11 Score=107.72 Aligned_cols=150 Identities=11% Similarity=0.112 Sum_probs=100.8
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CC-cceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QS-RSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~-~~~f~~gvpgsFy 117 (329)
++.+|+|+|||+|..+..+.. .|..+++..|+........-+.+. .. +..|..+ ++.
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~----------------~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~---d~~ 103 (219)
T 3dlc_A 43 TAGTCIDIGSGPGALSIALAK----------------QSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQG---DVH 103 (219)
T ss_dssp CEEEEEEETCTTSHHHHHHHH----------------HSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC---BTT
T ss_pred CCCEEEEECCCCCHHHHHHHH----------------cCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEc---CHH
Confidence 344999999999999888874 123689999998766655444321 11 2234443 565
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
+..+|++++|+|+++.++||+. |...+|+..++.|+|||.++++..-.+
T Consensus 104 ~~~~~~~~~D~v~~~~~l~~~~-------------------------------~~~~~l~~~~~~L~pgG~l~~~~~~~~ 152 (219)
T 3dlc_A 104 NIPIEDNYADLIVSRGSVFFWE-------------------------------DVATAFREIYRILKSGGKTYIGGGFGN 152 (219)
T ss_dssp BCSSCTTCEEEEEEESCGGGCS-------------------------------CHHHHHHHHHHHEEEEEEEEEEECCSS
T ss_pred HCCCCcccccEEEECchHhhcc-------------------------------CHHHHHHHHHHhCCCCCEEEEEeccCc
Confidence 5558899999999999999974 334789999999999999999863322
Q ss_pred CCCcccCCcccchHHHHHHH-------HHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 198 DGIPLVNNAAGSFYNTFGSC-------LVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~a-------~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
. .+.+.+... |....... ....+.+++.+++++.| |++.++...
T Consensus 153 ~----------~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~aG-f~~v~~~~~ 203 (219)
T 3dlc_A 153 K----------ELRDSISAEMIRKNPDWKEFNRKN------ISQENVERFQNVLDEIG-ISSYEIILG 203 (219)
T ss_dssp H----------HHHHHHHHHHHHHCTTHHHHHHHH------SSHHHHHHHHHHHHHHT-CSSEEEEEE
T ss_pred H----------HHHHHHHHHHHHhHHHHHhhhhhc------cccCCHHHHHHHHHHcC-CCeEEEEec
Confidence 1 112222222 22221112 33458899999999985 987766543
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.19 E-value=4.1e-11 Score=110.87 Aligned_cols=152 Identities=14% Similarity=0.116 Sum_probs=97.6
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCc-----------ceeee
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSR-----------SYYAA 110 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~-----------~~f~~ 110 (329)
+..+|||+|||+|..+..+.. .+..+|+..|+...+...+-+.+.... ..+..
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~----------------~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~ 134 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSAC----------------SHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIE 134 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGG----------------GGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhc----------------cCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhc
Confidence 457999999999995443321 112489999998877665433222100 00111
Q ss_pred c-------------------ccccccc-c-----cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHH
Q 037735 111 G-------------------VPGSFYS-S-----LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYA 165 (329)
Q Consensus 111 g-------------------vpgsFy~-~-----lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~ 165 (329)
| +.+++.. . -+|++++|+|+|+.++||+..-.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~----------------------- 191 (289)
T 2g72_A 135 GKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDL----------------------- 191 (289)
T ss_dssp CSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSH-----------------------
T ss_pred CcccchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCH-----------------------
Confidence 1 1124433 1 25678899999999999975321
Q ss_pred HHHhhcHHHHHHHHHHHhccCceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHH
Q 037735 166 AQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQ 245 (329)
Q Consensus 166 ~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~ 245 (329)
.|+..+|+..++.|+|||+|++...-..+.... ..+. ...++.+.+++.++++
T Consensus 192 ----~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~~~--------------------~~~~---~~~~~~~~~~l~~~l~ 244 (289)
T 2g72_A 192 ----ASFQRALDHITTLLRPGGHLLLIGALEESWYLA--------------------GEAR---LTVVPVSEEEVREALV 244 (289)
T ss_dssp ----HHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEE--------------------TTEE---EECCCCCHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhcCCCCEEEEEEecCcceEEc--------------------CCee---eeeccCCHHHHHHHHH
Confidence 256788999999999999999985332221000 0000 0045679999999999
Q ss_pred hCCceEEeEEEEeec
Q 037735 246 RNGNFTIERMEKMTN 260 (329)
Q Consensus 246 ~~g~f~i~~~e~~~~ 260 (329)
+.| |+++.++.+..
T Consensus 245 ~aG-f~~~~~~~~~~ 258 (289)
T 2g72_A 245 RSG-YKVRDLRTYIM 258 (289)
T ss_dssp HTT-EEEEEEEEEEC
T ss_pred HcC-CeEEEeeEeec
Confidence 984 99999887653
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.3e-10 Score=103.33 Aligned_cols=164 Identities=12% Similarity=0.077 Sum_probs=101.5
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcc------hHHhhhhcCCC----Ccceeee
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDN------DFNTLFKSLPQ----SRSYYAA 110 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~n------dfn~lf~~l~~----~~~~f~~ 110 (329)
.+..+|+|+|||+|..+..+.... .|..+++..|+... .....-+.+.. .+-.|..
T Consensus 42 ~~~~~vLDiGcG~G~~~~~l~~~~--------------g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~ 107 (275)
T 3bkx_A 42 KPGEKILEIGCGQGDLSAVLADQV--------------GSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHF 107 (275)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHH--------------CTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEEC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHh--------------CCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEE
Confidence 345799999999999999887522 23468999999765 44444333211 1123343
Q ss_pred ccccccc--cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCce
Q 037735 111 GVPGSFY--SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGL 188 (329)
Q Consensus 111 gvpgsFy--~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~ 188 (329)
+. .+. ...+|++++|+|+|+.++|++.+. ..+++...+-++|||+
T Consensus 108 ~d--~~~~~~~~~~~~~fD~v~~~~~l~~~~~~-------------------------------~~~~~~~~~l~~~gG~ 154 (275)
T 3bkx_A 108 NT--NLSDDLGPIADQHFDRVVLAHSLWYFASA-------------------------------NALALLFKNMAAVCDH 154 (275)
T ss_dssp SC--CTTTCCGGGTTCCCSEEEEESCGGGSSCH-------------------------------HHHHHHHHHHTTTCSE
T ss_pred CC--hhhhccCCCCCCCEEEEEEccchhhCCCH-------------------------------HHHHHHHHHHhCCCCE
Confidence 32 232 223678999999999999997542 2456666666667999
Q ss_pred EEEEecccCCCCcccCCcccchHHHHH-HHHHHHHhcCCcCCCc-ccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 189 AALVMFSVPDGIPLVNNAAGSFYNTFG-SCLVELTKMGILSKEK-MYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 189 l~~~~~g~~~~~~~~~~~~~~~~~~l~-~a~~~l~~eG~i~~~~-~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
+++..+..+...+. ....++..+. ..+......+ ... ..+++.+++.+++++. +|++++.+.+
T Consensus 155 l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~l~~~l~~a-Gf~~~~~~~~ 219 (275)
T 3bkx_A 155 VDVAEWSMQPTALD---QIGHLQAAMIQGLLYAIAPSD---VANIRTLITPDTLAQIAHDN-TWTYTAGTIV 219 (275)
T ss_dssp EEEEEECSSCSSGG---GHHHHHHHHHHHHHHHHSCCT---TCSCCCCCCHHHHHHHHHHH-TCEEEECCCB
T ss_pred EEEEEecCCCCchh---hhhHHHHHHHHHHHhhccccc---cccccccCCHHHHHHHHHHC-CCeeEEEEEe
Confidence 99999876543221 0111121121 1122111111 011 4578999999999998 4999888766
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.1e-10 Score=104.03 Aligned_cols=161 Identities=21% Similarity=0.240 Sum_probs=103.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccC
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLF 121 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lf 121 (329)
+..+|+|+|||+|..+..+.+ + .+ .+++..|+........-+.....+.-+.. +++.+..+
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~--------~-------~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~---~d~~~~~~ 103 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHE--------H-------GA-SYVLGLDLSEKMLARARAAGPDTGITYER---ADLDKLHL 103 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHHH--------T-------TC-SEEEEEESCHHHHHHHHHTSCSSSEEEEE---CCGGGCCC
T ss_pred CCCEEEEEcCcCCHHHHHHHH--------C-------CC-CeEEEEcCCHHHHHHHHHhcccCCceEEE---cChhhccC
Confidence 457999999999999887764 1 11 27999999877766655555432223444 35655557
Q ss_pred CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCCc
Q 037735 122 PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIP 201 (329)
Q Consensus 122 p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~ 201 (329)
|++++|+|+++.++||+.+ ...+|+..++.|+|||+++++++.+.....
T Consensus 104 ~~~~fD~v~~~~~l~~~~~-------------------------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~ 152 (243)
T 3bkw_A 104 PQDSFDLAYSSLALHYVED-------------------------------VARLFRTVHQALSPGGHFVFSTEHPIYMAP 152 (243)
T ss_dssp CTTCEEEEEEESCGGGCSC-------------------------------HHHHHHHHHHHEEEEEEEEEEEECHHHHCC
T ss_pred CCCCceEEEEeccccccch-------------------------------HHHHHHHHHHhcCcCcEEEEEeCCcccccC
Confidence 8899999999999999743 347899999999999999999864321000
Q ss_pred ccC------Cc-----ccchHH--HHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEeec
Q 037735 202 LVN------NA-----AGSFYN--TFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMTN 260 (329)
Q Consensus 202 ~~~------~~-----~~~~~~--~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~~ 260 (329)
... .+ ....+. .....| + .++. ..|+++.+|+.+++++.| |+++.++...+
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~----~~~~~t~~~~~~~l~~aG-F~~~~~~~~~~ 216 (243)
T 3bkw_A 153 ARPGWAIDAEGRRTWPIDRYLVEGPRKTDW--L-AKGV----VKHHRTVGTTLNALIRSG-FAIEHVEEFCP 216 (243)
T ss_dssp SSCSCEECTTSCEEEEECCTTCCEEECTTH--H-HHSC----CEEECCHHHHHHHHHHTT-CEEEEEEECCC
T ss_pred cCcceeecCCCceEEeecccccccceeeee--c-cCce----EEEeccHHHHHHHHHHcC-CEeeeeccCCC
Confidence 000 00 000000 000000 0 0010 155679999999999994 99998876543
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.7e-11 Score=106.45 Aligned_cols=154 Identities=12% Similarity=0.094 Sum_probs=98.6
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeecccccccccc-
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSL- 120 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~l- 120 (329)
.+.+|+|+|||+|.++..+.+ . ..+++..|+........-+. + ...+..+.-.++-...
T Consensus 52 ~~~~vLdiG~G~G~~~~~l~~--------~---------~~~v~~vD~s~~~~~~a~~~-~--~~~~~~~~~~~~~~~~~ 111 (227)
T 3e8s_A 52 QPERVLDLGCGEGWLLRALAD--------R---------GIEAVGVDGDRTLVDAARAA-G--AGEVHLASYAQLAEAKV 111 (227)
T ss_dssp CCSEEEEETCTTCHHHHHHHT--------T---------TCEEEEEESCHHHHHHHHHT-C--SSCEEECCHHHHHTTCS
T ss_pred CCCEEEEeCCCCCHHHHHHHH--------C---------CCEEEEEcCCHHHHHHHHHh-c--ccccchhhHHhhccccc
Confidence 458999999999999887763 1 25799999987766555443 2 1223333211221223
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCC
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGI 200 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~ 200 (329)
.+.+++|+|+++.++| ..+ ...+|+..++.|+|||+|+++.+.+....
T Consensus 112 ~~~~~fD~v~~~~~l~-~~~-------------------------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~ 159 (227)
T 3e8s_A 112 PVGKDYDLICANFALL-HQD-------------------------------IIELLSAMRTLLVPGGALVIQTLHPWSVA 159 (227)
T ss_dssp CCCCCEEEEEEESCCC-SSC-------------------------------CHHHHHHHHHTEEEEEEEEEEECCTTTTC
T ss_pred ccCCCccEEEECchhh-hhh-------------------------------HHHHHHHHHHHhCCCeEEEEEecCccccC
Confidence 3455699999999999 332 24789999999999999999998765432
Q ss_pred cccCCcccchHHHHHHHHHHHHhcCCcCC--Cc-ccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 201 PLVNNAAGSFYNTFGSCLVELTKMGILSK--EK-MYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 201 ~~~~~~~~~~~~~l~~a~~~l~~eG~i~~--~~-~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
.. ..... |....-.+.... .. .++++.+|+.+++++. ||++++++..
T Consensus 160 ~~-~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a-Gf~~~~~~~~ 209 (227)
T 3e8s_A 160 DG-DYQDG---------WREESFAGFAGDWQPMPWYFRTLASWLNALDMA-GLRLVSLQEP 209 (227)
T ss_dssp TT-CCSCE---------EEEECCTTSSSCCCCEEEEECCHHHHHHHHHHT-TEEEEEEECC
T ss_pred cc-ccccc---------cchhhhhccccCcccceEEEecHHHHHHHHHHc-CCeEEEEecC
Confidence 10 00000 000000011111 01 6778999999999999 4999988763
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.17 E-value=5.7e-10 Score=98.85 Aligned_cols=141 Identities=14% Similarity=0.102 Sum_probs=95.1
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccCC
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLFP 122 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lfp 122 (329)
..+|+|+|||+|.++..+.. . +..|+........-+. ..-+.. +++....++
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~--------------------~-~~vD~s~~~~~~a~~~----~~~~~~---~d~~~~~~~ 99 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKI--------------------K-IGVEPSERMAEIARKR----GVFVLK---GTAENLPLK 99 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTC--------------------C-EEEESCHHHHHHHHHT----TCEEEE---CBTTBCCSC
T ss_pred CCcEEEeCCCCCHHHHHHHH--------------------H-hccCCCHHHHHHHHhc----CCEEEE---cccccCCCC
Confidence 57999999999999887742 1 6677766555444332 112333 345444478
Q ss_pred CCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCCcc
Q 037735 123 KSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPL 202 (329)
Q Consensus 123 ~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~ 202 (329)
++++|+|+++.++||+.+ ...+|+..++.|+|||.++++.+.+.+
T Consensus 100 ~~~fD~v~~~~~l~~~~~-------------------------------~~~~l~~~~~~L~pgG~l~i~~~~~~~---- 144 (219)
T 1vlm_A 100 DESFDFALMVTTICFVDD-------------------------------PERALKEAYRILKKGGYLIVGIVDRES---- 144 (219)
T ss_dssp TTCEEEEEEESCGGGSSC-------------------------------HHHHHHHHHHHEEEEEEEEEEEECSSS----
T ss_pred CCCeeEEEEcchHhhccC-------------------------------HHHHHHHHHHHcCCCcEEEEEEeCCcc----
Confidence 889999999999999743 347899999999999999999876543
Q ss_pred cCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 203 VNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 203 ~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
.+. ..+..+ ..+........+.+.+++.+++++.| |+++.+...
T Consensus 145 -------~~~---~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~G-f~~~~~~~~ 188 (219)
T 1vlm_A 145 -------FLG---REYEKN-KEKSVFYKNARFFSTEELMDLMRKAG-FEEFKVVQT 188 (219)
T ss_dssp -------HHH---HHHHHT-TTC-CCSTTCCCCCHHHHHHHHHHTT-CEEEEEEEE
T ss_pred -------HHH---HHHHHH-hcCcchhcccccCCHHHHHHHHHHCC-CeEEEEecc
Confidence 111 111111 11211111145579999999999984 999887764
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=3.4e-10 Score=103.91 Aligned_cols=141 Identities=10% Similarity=0.060 Sum_probs=100.7
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC-------------------
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP------------------- 102 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~------------------- 102 (329)
+..+|||+|||+|.++..+.+ + ..+|+..|+...+.....+...
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~--------~---------G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~ 130 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFAD--------R---------GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKS 130 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHH--------T---------TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEE
T ss_pred CCCeEEEeCCCCcHHHHHHHH--------C---------CCeEEEEECCHHHHHHHHHhccccccccccccccccccccc
Confidence 457999999999999988874 1 1589999999888776654432
Q ss_pred -CCcceeeeccccccccccCCC-CceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHH
Q 037735 103 -QSRSYYAAGVPGSFYSSLFPK-SSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRA 180 (329)
Q Consensus 103 -~~~~~f~~gvpgsFy~~lfp~-~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra 180 (329)
..+--|..| ++.+-.+++ +++|+|++..+++++.. .|...+++..+
T Consensus 131 ~~~~i~~~~~---D~~~l~~~~~~~FD~V~~~~~l~~l~~-----------------------------~~~~~~l~~~~ 178 (252)
T 2gb4_A 131 SSGSISLYCC---SIFDLPRANIGKFDRIWDRGALVAINP-----------------------------GDHDRYADIIL 178 (252)
T ss_dssp TTSSEEEEES---CTTTGGGGCCCCEEEEEESSSTTTSCG-----------------------------GGHHHHHHHHH
T ss_pred CCCceEEEEC---ccccCCcccCCCEEEEEEhhhhhhCCH-----------------------------HHHHHHHHHHH
Confidence 012234444 675544543 89999999999999741 14557899999
Q ss_pred HHhccCceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEeec
Q 037735 181 QELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMTN 260 (329)
Q Consensus 181 ~eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~~ 260 (329)
+.|+|||+|++.++..+.... .|- .+..+++|+.+.++.. |+++.++....
T Consensus 179 ~~LkpGG~l~l~~~~~~~~~~----------------------~g~-----~~~~~~~el~~~l~~~--f~v~~~~~~~~ 229 (252)
T 2gb4_A 179 SLLRKEFQYLVAVLSYDPTKH----------------------AGP-----PFYVPSAELKRLFGTK--CSMQCLEEVDA 229 (252)
T ss_dssp HTEEEEEEEEEEEEECCTTSC----------------------CCS-----SCCCCHHHHHHHHTTT--EEEEEEEEEEC
T ss_pred HHcCCCeEEEEEEEecCCccC----------------------CCC-----CCCCCHHHHHHHhhCC--eEEEEEecccc
Confidence 999999999877655332100 011 3446899999999863 99999886643
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.15 E-value=7e-11 Score=106.18 Aligned_cols=144 Identities=15% Similarity=0.113 Sum_probs=103.0
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC---cceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS---RSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~---~~~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|..+..+.+ + . ..+++..|+...+....-+.+... ..-|..+ ++..
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~--------~-------~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~---d~~~ 139 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLL--------P-------L-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCC---GLQD 139 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTT--------T-------T-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEEC---CGGG
T ss_pred CCCEEEEECCCCCHHHHHHHH--------h-------c-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEc---Chhh
Confidence 467999999999999888764 1 1 147999999877766655544321 1224443 5655
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCC
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
-.++++++|+|+++.++|++.+ .++..+|+..++.|+|||+|+++.+...+
T Consensus 140 ~~~~~~~fD~v~~~~~l~~~~~-----------------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 190 (241)
T 2ex4_A 140 FTPEPDSYDVIWIQWVIGHLTD-----------------------------QHLAEFLRRCKGSLRPNGIIVIKDNMAQE 190 (241)
T ss_dssp CCCCSSCEEEEEEESCGGGSCH-----------------------------HHHHHHHHHHHHHEEEEEEEEEEEEEBSS
T ss_pred cCCCCCCEEEEEEcchhhhCCH-----------------------------HHHHHHHHHHHHhcCCCeEEEEEEccCCC
Confidence 5577789999999999999643 13458899999999999999998876554
Q ss_pred CCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 199 GIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
.. .| .. ..+ .+.++.+++.+++++.| |++++.+..
T Consensus 191 ~~---------~~-------~~--~~~------~~~~~~~~~~~~l~~aG-f~~~~~~~~ 225 (241)
T 2ex4_A 191 GV---------IL-------DD--VDS------SVCRDLDVVRRIICSAG-LSLLAEERQ 225 (241)
T ss_dssp SE---------EE-------ET--TTT------EEEEBHHHHHHHHHHTT-CCEEEEEEC
T ss_pred cc---------ee-------cc--cCC------cccCCHHHHHHHHHHcC-CeEEEeeec
Confidence 11 11 00 011 45579999999999985 999888765
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-10 Score=106.44 Aligned_cols=151 Identities=16% Similarity=0.144 Sum_probs=98.7
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCc-c-------eeee--
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSR-S-------YYAA-- 110 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~-~-------~f~~-- 110 (329)
.+..+|||+|||+|.++..+.. . .. -+|+..|+..++...+-+.+.... . .|++
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~--------~-------~~-~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~ 117 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAAC--------D-------SF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACEL 117 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGG--------G-------TE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHH--------h-------hh-cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhc
Confidence 3457899999999988876642 1 11 269999999887776543221100 0 0000
Q ss_pred --------------------ccccccccc-cC---CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHH
Q 037735 111 --------------------GVPGSFYSS-LF---PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAA 166 (329)
Q Consensus 111 --------------------gvpgsFy~~-lf---p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~ 166 (329)
.+.++..+. .+ +.+++|+|+|+.+|||+..-+
T Consensus 118 ~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~------------------------ 173 (263)
T 2a14_A 118 EGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSL------------------------ 173 (263)
T ss_dssp TTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSH------------------------
T ss_pred CCCCcchhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCH------------------------
Confidence 122344332 22 257999999999999974321
Q ss_pred HHhhcHHHHHHHHHHHhccCceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCc-ccCCCHHHHHHHHH
Q 037735 167 QFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEK-MYNPTPKELEGIIQ 245 (329)
Q Consensus 167 q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~-~y~ps~eE~~~~i~ 245 (329)
.|+...|+..++.|+|||+|+++.....+... .| ...- .+..+.+|+.+.++
T Consensus 174 ---~~~~~~l~~i~r~LKPGG~li~~~~~~~~~~~----------------------~g--~~~~~~~~~~~~~l~~~l~ 226 (263)
T 2a14_A 174 ---DAYRAALCNLASLLKPGGHLVTTVTLRLPSYM----------------------VG--KREFSCVALEKGEVEQAVL 226 (263)
T ss_dssp ---HHHHHHHHHHHTTEEEEEEEEEEEESSCCEEE----------------------ET--TEEEECCCCCHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHcCCCcEEEEEEeecCccce----------------------eC--CeEeeccccCHHHHHHHHH
Confidence 26678899999999999999999764332100 01 0000 44569999999999
Q ss_pred hCCceEEeEEEEee
Q 037735 246 RNGNFTIERMEKMT 259 (329)
Q Consensus 246 ~~g~f~i~~~e~~~ 259 (329)
+.| |++++++...
T Consensus 227 ~aG-F~i~~~~~~~ 239 (263)
T 2a14_A 227 DAG-FDIEQLLHSP 239 (263)
T ss_dssp HTT-EEEEEEEEEC
T ss_pred HCC-CEEEEEeecc
Confidence 995 9999988763
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.15 E-value=8.5e-11 Score=103.21 Aligned_cols=140 Identities=17% Similarity=0.112 Sum_probs=100.5
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccC
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLF 121 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lf 121 (329)
+..+|+|+|||+|.++..+.+ . ..+++..|+........-+... ..+.. +++. .+-
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~--------~---------~~~v~~vD~s~~~~~~a~~~~~---~~~~~---~d~~-~~~ 98 (211)
T 3e23_A 43 AGAKILELGCGAGYQAEAMLA--------A---------GFDVDATDGSPELAAEASRRLG---RPVRT---MLFH-QLD 98 (211)
T ss_dssp TTCEEEESSCTTSHHHHHHHH--------T---------TCEEEEEESCHHHHHHHHHHHT---SCCEE---CCGG-GCC
T ss_pred CCCcEEEECCCCCHHHHHHHH--------c---------CCeEEEECCCHHHHHHHHHhcC---CceEE---eeec-cCC
Confidence 457999999999999988864 1 1479999998776665544432 12233 3553 344
Q ss_pred CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCCc
Q 037735 122 PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIP 201 (329)
Q Consensus 122 p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~ 201 (329)
+++++|+|+++.++|++.. .|+..+|+..++.|+|||++++++........
T Consensus 99 ~~~~fD~v~~~~~l~~~~~-----------------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~ 149 (211)
T 3e23_A 99 AIDAYDAVWAHACLLHVPR-----------------------------DELADVLKLIWRALKPGGLFYASYKSGEGEGR 149 (211)
T ss_dssp CCSCEEEEEECSCGGGSCH-----------------------------HHHHHHHHHHHHHEEEEEEEEEEEECCSSCEE
T ss_pred CCCcEEEEEecCchhhcCH-----------------------------HHHHHHHHHHHHhcCCCcEEEEEEcCCCcccc
Confidence 8999999999999999641 25668899999999999999999765433211
Q ss_pred ccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 202 LVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 202 ~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
. ..... ..+.+.+++.+++++.|.|+++.++..
T Consensus 150 ~------------------~~~~~------~~~~~~~~~~~~l~~aG~f~~~~~~~~ 182 (211)
T 3e23_A 150 D------------------KLARY------YNYPSEEWLRARYAEAGTWASVAVESS 182 (211)
T ss_dssp C------------------TTSCE------ECCCCHHHHHHHHHHHCCCSEEEEEEE
T ss_pred c------------------ccchh------ccCCCHHHHHHHHHhCCCcEEEEEEec
Confidence 0 00000 556799999999998833999888765
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.14 E-value=2e-10 Score=100.71 Aligned_cols=134 Identities=16% Similarity=0.160 Sum_probs=92.7
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccc-eEEecCCCcchHHhhhhcCCCCcceeeecccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEF-QVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~-~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~l 120 (329)
+..+|+|+|||+|..+..+ . . +++..|+...+....-+..+ ..-+..+ ++.+-.
T Consensus 36 ~~~~vLdiG~G~G~~~~~l----------~----------~~~v~~vD~s~~~~~~a~~~~~--~~~~~~~---d~~~~~ 90 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL----------P----------YPQKVGVEPSEAMLAVGRRRAP--EATWVRA---WGEALP 90 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC----------C----------CSEEEEECCCHHHHHHHHHHCT--TSEEECC---CTTSCC
T ss_pred CCCeEEEECCCCCHhHHhC----------C----------CCeEEEEeCCHHHHHHHHHhCC--CcEEEEc---ccccCC
Confidence 5679999999999877655 1 3 78999998777666555442 1233333 454444
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCC
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGI 200 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~ 200 (329)
+|++++|+|+++.++||+.+ ...+|+..++.|+|||.++++++.+.+
T Consensus 91 ~~~~~fD~v~~~~~l~~~~~-------------------------------~~~~l~~~~~~L~pgG~l~i~~~~~~~-- 137 (211)
T 2gs9_A 91 FPGESFDVVLLFTTLEFVED-------------------------------VERVLLEARRVLRPGGALVVGVLEALS-- 137 (211)
T ss_dssp SCSSCEEEEEEESCTTTCSC-------------------------------HHHHHHHHHHHEEEEEEEEEEEECTTS--
T ss_pred CCCCcEEEEEEcChhhhcCC-------------------------------HHHHHHHHHHHcCCCCEEEEEecCCcC--
Confidence 78899999999999999753 347899999999999999999987653
Q ss_pred cccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHH
Q 037735 201 PLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQ 245 (329)
Q Consensus 201 ~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~ 245 (329)
.|..+ +..+...|........+.|++|++++++
T Consensus 138 ---------~~~~~---~~~~~~~~~~~~~~~~~~s~~~l~~~l~ 170 (211)
T 2gs9_A 138 ---------PWAAL---YRRLGEKGVLPWAQARFLAREDLKALLG 170 (211)
T ss_dssp ---------HHHHH---HHHHHHTTCTTGGGCCCCCHHHHHHHHC
T ss_pred ---------cHHHH---HHHHhhccCccccccccCCHHHHHHHhc
Confidence 12211 1222223311111155679999999998
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-10 Score=105.52 Aligned_cols=106 Identities=15% Similarity=0.197 Sum_probs=78.4
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeecccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~l 120 (329)
++..+|||+|||+|..+..+.. . . .+++..|+...+....-+.++. .-|..+ ++.+ +
T Consensus 49 ~~~~~vLDiGcG~G~~~~~l~~--------~-------~--~~v~gvD~s~~~~~~a~~~~~~--~~~~~~---d~~~-~ 105 (263)
T 3pfg_A 49 PKAASLLDVACGTGMHLRHLAD--------S-------F--GTVEGLELSADMLAIARRRNPD--AVLHHG---DMRD-F 105 (263)
T ss_dssp TTCCEEEEETCTTSHHHHHHTT--------T-------S--SEEEEEESCHHHHHHHHHHCTT--SEEEEC---CTTT-C
T ss_pred CCCCcEEEeCCcCCHHHHHHHH--------c-------C--CeEEEEECCHHHHHHHHhhCCC--CEEEEC---ChHH-C
Confidence 4458999999999999888763 1 1 3799999987776665555442 234444 5543 3
Q ss_pred CCCCceeEEEecc-ceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 121 FPKSSLHFVHSSY-TLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 121 fp~~s~dl~~Ss~-alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
.+++++|+|+++. ++||+... .|+..+|+..++.|+|||+|++.....+
T Consensus 106 ~~~~~fD~v~~~~~~l~~~~~~----------------------------~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 155 (263)
T 3pfg_A 106 SLGRRFSAVTCMFSSIGHLAGQ----------------------------AELDAALERFAAHVLPDGVVVVEPWWFP 155 (263)
T ss_dssp CCSCCEEEEEECTTGGGGSCHH----------------------------HHHHHHHHHHHHTEEEEEEEEECCCCCT
T ss_pred CccCCcCEEEEcCchhhhcCCH----------------------------HHHHHHHHHHHHhcCCCcEEEEEeccCh
Confidence 3378999999998 99997432 3667899999999999999999865443
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.8e-10 Score=107.79 Aligned_cols=108 Identities=14% Similarity=0.247 Sum_probs=78.2
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC----------Ccceeeec
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ----------SRSYYAAG 111 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~----------~~~~f~~g 111 (329)
+..+|+|+|||+|..+..+.. .+..+++..|+...+....-+.... .+.-|..+
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~----------------~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 97 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKK----------------GRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITA 97 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHH----------------TTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEEC
T ss_pred CCCEEEEECCCCcHHHHHHHh----------------cCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEe
Confidence 467999999999999988764 1235899999988776654433211 11234444
Q ss_pred ccccccccc----C--CCCceeEEEeccceecc-cCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhc
Q 037735 112 VPGSFYSSL----F--PKSSLHFVHSSYTLHWL-SKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELV 184 (329)
Q Consensus 112 vpgsFy~~l----f--p~~s~dl~~Ss~alhWL-s~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~ 184 (329)
++..-. + +++++|+|+|+.++||+ .+.+ |...+|+..++.|+
T Consensus 98 ---D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~----------------------------~~~~~l~~~~~~Lk 146 (313)
T 3bgv_A 98 ---DSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYE----------------------------QADMMLRNACERLS 146 (313)
T ss_dssp ---CTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHH----------------------------HHHHHHHHHHTTEE
T ss_pred ---cccccchhhhcccCCCCEEEEEEecchhhccCCHH----------------------------HHHHHHHHHHHHhC
Confidence 443322 4 35699999999999998 4433 55688999999999
Q ss_pred cCceEEEEeccc
Q 037735 185 PGGLAALVMFSV 196 (329)
Q Consensus 185 pGG~l~~~~~g~ 196 (329)
|||++++++++.
T Consensus 147 pgG~li~~~~~~ 158 (313)
T 3bgv_A 147 PGGYFIGTTPNS 158 (313)
T ss_dssp EEEEEEEEEECH
T ss_pred CCcEEEEecCCh
Confidence 999999999875
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.11 E-value=5.4e-10 Score=94.60 Aligned_cols=134 Identities=14% Similarity=0.143 Sum_probs=98.1
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeecccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~l 120 (329)
.+..+|+|+|||+|.++..+.. . - .+++..|+........-+..+ +-.|..+ + ..
T Consensus 16 ~~~~~vLDiG~G~G~~~~~l~~--------~--------~-~~v~~vD~s~~~~~~a~~~~~--~v~~~~~---d---~~ 70 (170)
T 3i9f_A 16 GKKGVIVDYGCGNGFYCKYLLE--------F--------A-TKLYCIDINVIALKEVKEKFD--SVITLSD---P---KE 70 (170)
T ss_dssp SCCEEEEEETCTTCTTHHHHHT--------T--------E-EEEEEECSCHHHHHHHHHHCT--TSEEESS---G---GG
T ss_pred CCCCeEEEECCCCCHHHHHHHh--------h--------c-CeEEEEeCCHHHHHHHHHhCC--CcEEEeC---C---CC
Confidence 4467999999999999988864 1 1 279999998766665554432 2234443 3 34
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCC
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGI 200 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~ 200 (329)
+|++++|+++++.++||+.+ ...+|+...+.|+|||++++..+.+.+..
T Consensus 71 ~~~~~~D~v~~~~~l~~~~~-------------------------------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~ 119 (170)
T 3i9f_A 71 IPDNSVDFILFANSFHDMDD-------------------------------KQHVISEVKRILKDDGRVIIIDWRKENTG 119 (170)
T ss_dssp SCTTCEEEEEEESCSTTCSC-------------------------------HHHHHHHHHHHEEEEEEEEEEEECSSCCS
T ss_pred CCCCceEEEEEccchhcccC-------------------------------HHHHHHHHHHhcCCCCEEEEEEcCccccc
Confidence 78899999999999999743 34789999999999999999988765432
Q ss_pred cccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEee
Q 037735 201 PLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMT 259 (329)
Q Consensus 201 ~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~ 259 (329)
... . .....+.+++.+.++ +|++.+.....
T Consensus 120 ~~~------~--------------------~~~~~~~~~~~~~l~---Gf~~~~~~~~~ 149 (170)
T 3i9f_A 120 IGP------P--------------------LSIRMDEKDYMGWFS---NFVVEKRFNPT 149 (170)
T ss_dssp SSS------C--------------------GGGCCCHHHHHHHTT---TEEEEEEECSS
T ss_pred cCc------h--------------------HhhhcCHHHHHHHHh---CcEEEEccCCC
Confidence 110 0 033468999999998 59998877653
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.10 E-value=6.2e-10 Score=102.83 Aligned_cols=160 Identities=10% Similarity=0.006 Sum_probs=102.0
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCc-cceEEecCCCcchHHhhhhcCCC--Ccceeeeccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAI-EFQVFFNDHSDNDFNTLFKSLPQ--SRSYYAAGVPGSFY 117 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~p-e~~v~~nDLp~ndfn~lf~~l~~--~~~~f~~gvpgsFy 117 (329)
.++.+|||+|||+|..+..+.+ . .| ..+++..|+........-+.... .+--|..+ ++.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~--------~-------~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~---d~~ 82 (284)
T 3gu3_A 21 TKPVHIVDYGCGYGYLGLVLMP--------L-------LPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEG---DAT 82 (284)
T ss_dssp CSCCEEEEETCTTTHHHHHHTT--------T-------SCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEES---CTT
T ss_pred CCCCeEEEecCCCCHHHHHHHH--------h-------CCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEc---chh
Confidence 4568999999999999888864 2 23 36899999987766554433221 12234443 564
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
+-.+ ++++|+|++..++|++. |+..+|+...+.|+|||++++..+...
T Consensus 83 ~~~~-~~~fD~v~~~~~l~~~~-------------------------------~~~~~l~~~~~~LkpgG~l~~~~~~~~ 130 (284)
T 3gu3_A 83 EIEL-NDKYDIAICHAFLLHMT-------------------------------TPETMLQKMIHSVKKGGKIICFEPHWI 130 (284)
T ss_dssp TCCC-SSCEEEEEEESCGGGCS-------------------------------SHHHHHHHHHHTEEEEEEEEEEECCHH
T ss_pred hcCc-CCCeeEEEECChhhcCC-------------------------------CHHHHHHHHHHHcCCCCEEEEEecchh
Confidence 4334 57999999999999964 344889999999999999999876510
Q ss_pred ----CCCcccCC-cccchHHHHHHHHHHHH-hcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 198 ----DGIPLVNN-AAGSFYNTFGSCLVELT-KMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 198 ----~~~~~~~~-~~~~~~~~l~~a~~~l~-~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
.......+ ........+...+.+.. ..| ..+++.+++.+++++.| |+.++...
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~l~~aG-F~~v~~~~ 189 (284)
T 3gu3_A 131 SNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNG------KDGNIGMKIPIYLSELG-VKNIECRV 189 (284)
T ss_dssp HHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTC------CCTTGGGTHHHHHHHTT-CEEEEEEE
T ss_pred cccccceecCcchhhccchHHHHHHHHHHhhhhc------ccccHHHHHHHHHHHcC-CCeEEEEE
Confidence 00000000 00001222333333221 234 55677889999999995 98877643
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.10 E-value=8.8e-10 Score=105.06 Aligned_cols=149 Identities=19% Similarity=0.184 Sum_probs=99.3
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC----Ccceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ----SRSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~----~~~~f~~gvpgsF 116 (329)
.+..+|+|+|||+|..+..+.+ + .|..+++.-|+|... . -+.... .+--|. .++|
T Consensus 183 ~~~~~vLDvG~G~G~~~~~l~~--------~-------~p~~~~~~~D~~~~~-~--~~~~~~~~~~~~v~~~---~~d~ 241 (348)
T 3lst_A 183 PATGTVADVGGGRGGFLLTVLR--------E-------HPGLQGVLLDRAEVV-A--RHRLDAPDVAGRWKVV---EGDF 241 (348)
T ss_dssp CSSEEEEEETCTTSHHHHHHHH--------H-------CTTEEEEEEECHHHH-T--TCCCCCGGGTTSEEEE---ECCT
T ss_pred cCCceEEEECCccCHHHHHHHH--------H-------CCCCEEEEecCHHHh-h--cccccccCCCCCeEEE---ecCC
Confidence 4568999999999999988875 3 355789999996422 2 111111 112233 3578
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
+ ..+| ++|+++++.++|.+++. +...+|+..++.|+|||++++.-...
T Consensus 242 ~-~~~p--~~D~v~~~~vlh~~~d~-----------------------------~~~~~L~~~~~~LkpgG~l~i~e~~~ 289 (348)
T 3lst_A 242 L-REVP--HADVHVLKRILHNWGDE-----------------------------DSVRILTNCRRVMPAHGRVLVIDAVV 289 (348)
T ss_dssp T-TCCC--CCSEEEEESCGGGSCHH-----------------------------HHHHHHHHHHHTCCTTCEEEEEECCB
T ss_pred C-CCCC--CCcEEEEehhccCCCHH-----------------------------HHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 6 4566 89999999999975431 33588999999999999999987654
Q ss_pred CCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 197 PDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
++.... .+....+ +.-++..| -..++.+|+.+++++.| |+++++..
T Consensus 290 ~~~~~~-------~~~~~~d-~~~~~~~~------~~~~t~~e~~~ll~~aG-f~~~~~~~ 335 (348)
T 3lst_A 290 PEGNDA-------HQSKEMD-FMMLAART------GQERTAAELEPLFTAAG-LRLDRVVG 335 (348)
T ss_dssp CSSSSC-------CHHHHHH-HHHHHTTS------CCCCBHHHHHHHHHHTT-EEEEEEEE
T ss_pred CCCCCc-------chhhhcC-hhhhhcCC------CcCCCHHHHHHHHHHCC-CceEEEEE
Confidence 432111 1111111 12232233 34589999999999995 99988765
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.10 E-value=6.8e-10 Score=98.66 Aligned_cols=107 Identities=18% Similarity=0.259 Sum_probs=77.3
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeecccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~l 120 (329)
.+..+|+|+|||+|..+..+.+.. .+++..|+...+....-+.++. .-+..+ ++.+..
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~-----------------~~v~~~D~s~~~~~~a~~~~~~--~~~~~~---d~~~~~ 96 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEF-----------------GDTAGLELSEDMLTHARKRLPD--ATLHQG---DMRDFR 96 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHH-----------------SEEEEEESCHHHHHHHHHHCTT--CEEEEC---CTTTCC
T ss_pred CCCCeEEEecccCCHHHHHHHHhC-----------------CcEEEEeCCHHHHHHHHHhCCC--CEEEEC---CHHHcc
Confidence 345799999999999998887521 2689999987776665555432 233443 453322
Q ss_pred CCCCceeEEEe-ccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCC
Q 037735 121 FPKSSLHFVHS-SYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 121 fp~~s~dl~~S-s~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
+ ++++|+|+| ..++||+.+. .|+..+|+..++.|+|||++++..+..++
T Consensus 97 ~-~~~~D~v~~~~~~~~~~~~~----------------------------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 146 (239)
T 3bxo_A 97 L-GRKFSAVVSMFSSVGYLKTT----------------------------EELGAAVASFAEHLEPGGVVVVEPWWFPE 146 (239)
T ss_dssp C-SSCEEEEEECTTGGGGCCSH----------------------------HHHHHHHHHHHHTEEEEEEEEECCCCCTT
T ss_pred c-CCCCcEEEEcCchHhhcCCH----------------------------HHHHHHHHHHHHhcCCCeEEEEEeccCcc
Confidence 3 789999995 4599997532 25678999999999999999998765543
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.09 E-value=4.6e-10 Score=99.86 Aligned_cols=106 Identities=13% Similarity=0.165 Sum_probs=77.7
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC--cceeeeccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS--RSYYAAGVPGSFYSS 119 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~--~~~f~~gvpgsFy~~ 119 (329)
+..+|+|+|||+|..+..+.+ . ..+++..|+..++....-+.++.. +.-|.. +++.+-
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~--------~---------~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~---~d~~~~ 96 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCP--------K---------FKNTWAVDLSQEMLSEAENKFRSQGLKPRLAC---QDISNL 96 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGG--------G---------SSEEEEECSCHHHHHHHHHHHHHTTCCCEEEC---CCGGGC
T ss_pred CCCeEEEeCCCCCHHHHHHHH--------C---------CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEe---cccccC
Confidence 567999999999999988863 1 147999999877766654443211 122333 356443
Q ss_pred cCCCCceeEEEecc-ceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 120 LFPKSSLHFVHSSY-TLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 120 lfp~~s~dl~~Ss~-alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
.++ +++|+|+++. ++||+.+. .|...+|+..++.|+|||++++.+..+
T Consensus 97 ~~~-~~fD~v~~~~~~l~~~~~~----------------------------~~~~~~l~~~~~~L~pgG~l~~~~~~~ 145 (246)
T 1y8c_A 97 NIN-RKFDLITCCLDSTNYIIDS----------------------------DDLKKYFKAVSNHLKEGGVFIFDINSY 145 (246)
T ss_dssp CCS-CCEEEEEECTTGGGGCCSH----------------------------HHHHHHHHHHHTTEEEEEEEEEEEECH
T ss_pred Ccc-CCceEEEEcCccccccCCH----------------------------HHHHHHHHHHHHhcCCCcEEEEEecCH
Confidence 455 8999999998 99997432 256788999999999999999988754
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-10 Score=112.69 Aligned_cols=147 Identities=14% Similarity=0.155 Sum_probs=99.0
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhc-CCCCcceeeecccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKS-LPQSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~-l~~~~~~f~~gvpgsFy~~l 120 (329)
+..+|||+|||+|..+..+.. + ..+++..|+..++....-+. ++.....|..+ +...-.
T Consensus 107 ~~~~VLDiGcG~G~~~~~l~~--------~---------g~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~---~~~~l~ 166 (416)
T 4e2x_A 107 PDPFIVEIGCNDGIMLRTIQE--------A---------GVRHLGFEPSSGVAAKAREKGIRVRTDFFEKA---TADDVR 166 (416)
T ss_dssp SSCEEEEETCTTTTTHHHHHH--------T---------TCEEEEECCCHHHHHHHHTTTCCEECSCCSHH---HHHHHH
T ss_pred CCCEEEEecCCCCHHHHHHHH--------c---------CCcEEEECCCHHHHHHHHHcCCCcceeeechh---hHhhcc
Confidence 457999999999998888764 1 14899999988776655443 11111112211 221223
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCC
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGI 200 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~ 200 (329)
++++++|+|+|+.++||+. |...||+..++.|+|||+|++.+....+.
T Consensus 167 ~~~~~fD~I~~~~vl~h~~-------------------------------d~~~~l~~~~r~LkpgG~l~i~~~~~~~~- 214 (416)
T 4e2x_A 167 RTEGPANVIYAANTLCHIP-------------------------------YVQSVLEGVDALLAPDGVFVFEDPYLGDI- 214 (416)
T ss_dssp HHHCCEEEEEEESCGGGCT-------------------------------THHHHHHHHHHHEEEEEEEEEEEECHHHH-
T ss_pred cCCCCEEEEEECChHHhcC-------------------------------CHHHHHHHHHHHcCCCeEEEEEeCChHHh-
Confidence 6789999999999999975 34588999999999999999987543210
Q ss_pred cccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEee
Q 037735 201 PLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMT 259 (329)
Q Consensus 201 ~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~ 259 (329)
. ....-... -.+..++.+.+++..++++.| |++.+++.+.
T Consensus 215 ----------~-------~~~~~~~~-~~~~~~~~s~~~l~~ll~~aG-f~~~~~~~~~ 254 (416)
T 4e2x_A 215 ----------V-------AKTSFDQI-FDEHFFLFSATSVQGMAQRCG-FELVDVQRLP 254 (416)
T ss_dssp ----------H-------HHTCGGGC-STTCCEECCHHHHHHHHHHTT-EEEEEEEEEC
T ss_pred ----------h-------hhcchhhh-hhhhhhcCCHHHHHHHHHHcC-CEEEEEEEcc
Confidence 0 00000000 011155689999999999994 9999988763
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.4e-09 Score=102.61 Aligned_cols=150 Identities=16% Similarity=0.147 Sum_probs=100.0
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC----CCcceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP----QSRSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~----~~~~~f~~gvpgsF 116 (329)
.+..+|+|+|||+|..+..+.+ + .|..+++.-|+ .......-+.+. ..+--|.. ++|
T Consensus 168 ~~~~~vlDvG~G~G~~~~~l~~--------~-------~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~---~d~ 228 (332)
T 3i53_A 168 AALGHVVDVGGGSGGLLSALLT--------A-------HEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVV---GSF 228 (332)
T ss_dssp GGGSEEEEETCTTSHHHHHHHH--------H-------CTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEE---CCT
T ss_pred CCCCEEEEeCCChhHHHHHHHH--------H-------CCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEec---CCC
Confidence 3468999999999988887765 3 34567888899 455554433221 11223443 578
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
+ ..+|. ++|++++..++|..++ .+..++|+..++.|+|||+|++.-.-.
T Consensus 229 ~-~~~p~-~~D~v~~~~vlh~~~~-----------------------------~~~~~~l~~~~~~L~pgG~l~i~e~~~ 277 (332)
T 3i53_A 229 F-DPLPA-GAGGYVLSAVLHDWDD-----------------------------LSAVAILRRCAEAAGSGGVVLVIEAVA 277 (332)
T ss_dssp T-SCCCC-SCSEEEEESCGGGSCH-----------------------------HHHHHHHHHHHHHHTTTCEEEEEECCC
T ss_pred C-CCCCC-CCcEEEEehhhccCCH-----------------------------HHHHHHHHHHHHhcCCCCEEEEEeecC
Confidence 6 45666 8999999999997542 134588999999999999999987654
Q ss_pred CCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 197 PDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
++..+ ...++.. -|+..+ -..+|.+|+.+++++.| |++.++...
T Consensus 278 ~~~~~------~~~~d~~-----~~~~~~------~~~~t~~e~~~ll~~aG-f~~~~~~~~ 321 (332)
T 3i53_A 278 GDEHA------GTGMDLR-----MLTYFG------GKERSLAELGELAAQAG-LAVRAAHPI 321 (332)
T ss_dssp C---C------CHHHHHH-----HHHHHS------CCCCCHHHHHHHHHHTT-EEEEEEEEC
T ss_pred CCCCc------cHHHHHH-----HHhhCC------CCCCCHHHHHHHHHHCC-CEEEEEEEC
Confidence 43211 1122211 122223 34589999999999995 999877643
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.8e-10 Score=106.99 Aligned_cols=166 Identities=14% Similarity=0.120 Sum_probs=102.5
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC------cceeeecccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS------RSYYAAGVPGSF 116 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~------~~~f~~gvpgsF 116 (329)
..+|||+|||+|.++..+.. + ..+|+..|+...+....-+.+... +--|+.+ ++
T Consensus 83 ~~~vLDlGcG~G~~~~~l~~--------~---------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~---d~ 142 (299)
T 3g2m_A 83 SGPVLELAAGMGRLTFPFLD--------L---------GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQG---DM 142 (299)
T ss_dssp CSCEEEETCTTTTTHHHHHT--------T---------TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEEC---BT
T ss_pred CCcEEEEeccCCHHHHHHHH--------c---------CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeC---ch
Confidence 34999999999999998874 1 257999999887776655544321 2234544 56
Q ss_pred ccccCCCCceeEEE-eccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 117 YSSLFPKSSLHFVH-SSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 117 y~~lfp~~s~dl~~-Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
.+ +-+++++|+|+ ++.++||++. .|...+|+..++.|+|||+|++.++.
T Consensus 143 ~~-~~~~~~fD~v~~~~~~~~~~~~-----------------------------~~~~~~l~~~~~~L~pgG~l~~~~~~ 192 (299)
T 3g2m_A 143 SA-FALDKRFGTVVISSGSINELDE-----------------------------ADRRGLYASVREHLEPGGKFLLSLAM 192 (299)
T ss_dssp TB-CCCSCCEEEEEECHHHHTTSCH-----------------------------HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hc-CCcCCCcCEEEECCcccccCCH-----------------------------HHHHHHHHHHHHHcCCCcEEEEEeec
Confidence 44 33378999888 5688998642 25668899999999999999999987
Q ss_pred cCCCCcccCCcccchHHH-HHHHH--HH----------H--H----hcCCcCCCc--ccCCCHHHHHHHHHhCCceEEeE
Q 037735 196 VPDGIPLVNNAAGSFYNT-FGSCL--VE----------L--T----KMGILSKEK--MYNPTPKELEGIIQRNGNFTIER 254 (329)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~-l~~a~--~~----------l--~----~eG~i~~~~--~y~ps~eE~~~~i~~~g~f~i~~ 254 (329)
++.......... ..+.. -...+ .. + . ..|...... .++.+++|+.++++..| |+++.
T Consensus 193 ~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aG-F~v~~ 270 (299)
T 3g2m_A 193 SEAAESEPLERK-QELPGRSGRRYVLHVRHLPAEEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSG-FDVIA 270 (299)
T ss_dssp CHHHHSCCCCC--------------CCEEEEEEEEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTT-CEEEE
T ss_pred Cccccccchhcc-ceeecCCCcEEEEEEEEeccccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCC-CEEEE
Confidence 653210000000 00000 00000 00 0 0 000000001 34569999999999995 99999
Q ss_pred EEEeec
Q 037735 255 MEKMTN 260 (329)
Q Consensus 255 ~e~~~~ 260 (329)
.+.+..
T Consensus 271 ~~~~~~ 276 (299)
T 3g2m_A 271 QTPFAS 276 (299)
T ss_dssp EEEECT
T ss_pred EEecCC
Confidence 987753
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.3e-09 Score=100.02 Aligned_cols=110 Identities=15% Similarity=0.219 Sum_probs=79.3
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC----cceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS----RSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~----~~~f~~gvpgsF 116 (329)
.+..+|||+|||+|..+..+.. . +..+++..|+...+....-+.+... +-.|..+ ++
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~--------~--------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~ 123 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYER--------A--------GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQ---DS 123 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHH--------H--------TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEES---CT
T ss_pred CCCCeEEEECCCCCHHHHHHHH--------C--------CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEEC---Cc
Confidence 3457999999999999888653 1 1237999999887766654443221 1234443 55
Q ss_pred ccccC-CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 117 YSSLF-PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 117 y~~lf-p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
.+..+ +++++|+|+++.++||+-.. ..|...+|+..++.|+|||++++.++.
T Consensus 124 ~~~~~~~~~~fD~v~~~~~l~~~~~~---------------------------~~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 124 YGRHMDLGKEFDVISSQFSFHYAFST---------------------------SESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp TTSCCCCSSCEEEEEEESCGGGGGSS---------------------------HHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred cccccCCCCCcCEEEECchhhhhcCC---------------------------HHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 44455 68999999999999995211 125678999999999999999999866
Q ss_pred c
Q 037735 196 V 196 (329)
Q Consensus 196 ~ 196 (329)
.
T Consensus 177 ~ 177 (298)
T 1ri5_A 177 R 177 (298)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=8.2e-10 Score=103.07 Aligned_cols=162 Identities=15% Similarity=0.121 Sum_probs=107.9
Q ss_pred CceEEEeeeCCC--CcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC---cceeeecccccc
Q 037735 42 NTFRIADFGCST--GPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS---RSYYAAGVPGSF 116 (329)
Q Consensus 42 ~~~~IaDlGCst--G~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~---~~~f~~gvpgsF 116 (329)
...+|+|+|||+ +.|+..+.+.+ .|+.+|+..|....+....-..+... +--|+.+.-.+.
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~--------------~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~ 143 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSV--------------APESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDP 143 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHH--------------CTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCH
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHH--------------CCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccCh
Confidence 457899999998 77888777633 46789999999888877665555431 234666542222
Q ss_pred ccccC--C--CCcee-----EEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCc
Q 037735 117 YSSLF--P--KSSLH-----FVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGG 187 (329)
Q Consensus 117 y~~lf--p--~~s~d-----l~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG 187 (329)
..++ | .+++| .++|+.+||||.+.. |....|+.-++.|+|||
T Consensus 144 -~~~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~----------------------------~p~~~l~~l~~~L~PGG 194 (277)
T 3giw_A 144 -ASILDAPELRDTLDLTRPVALTVIAIVHFVLDED----------------------------DAVGIVRRLLEPLPSGS 194 (277)
T ss_dssp -HHHHTCHHHHTTCCTTSCCEEEEESCGGGSCGGG----------------------------CHHHHHHHHHTTSCTTC
T ss_pred -hhhhcccccccccCcCCcchHHhhhhHhcCCchh----------------------------hHHHHHHHHHHhCCCCc
Confidence 1111 1 35555 588999999986532 23467999999999999
Q ss_pred eEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEeecC-ccc
Q 037735 188 LAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMTNP-KQQ 264 (329)
Q Consensus 188 ~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~~~-~~~ 264 (329)
+|+++.++.+...+ ..+.+.+.++ ..|. .+.++|.+|+.+.++ +|++..-.....+ |..
T Consensus 195 ~Lvls~~~~d~~p~--------~~~~~~~~~~---~~g~----p~~~rs~~ei~~~f~---GlelvePG~v~~~~Wrp 254 (277)
T 3giw_A 195 YLAMSIGTAEFAPQ--------EVGRVAREYA---ARNM----PMRLRTHAEAEEFFE---GLELVEPGIVQVHKWHP 254 (277)
T ss_dssp EEEEEEECCTTSHH--------HHHHHHHHHH---HTTC----CCCCCCHHHHHHTTT---TSEECTTCSEEGGGSSC
T ss_pred EEEEEeccCCCCHH--------HHHHHHHHHH---hcCC----CCccCCHHHHHHHhC---CCcccCCcEeecccccC
Confidence 99999998763211 1233444443 3342 167799999999984 6998765544333 654
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.8e-09 Score=103.93 Aligned_cols=151 Identities=14% Similarity=0.151 Sum_probs=101.7
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC----CCcceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP----QSRSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~----~~~~~f~~gvpgsF 116 (329)
.+..+|+|+|||+|..+..+.+ + .|..+++.-|+ .......-+.+. ..+--|.. ++|
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~~--------~-------~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~---~d~ 261 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVLD--------A-------FPGLRGTLLER-PPVAEEARELLTGRGLADRCEILP---GDF 261 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHHH--------H-------CTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEE---CCT
T ss_pred ccCcEEEEeCCCccHHHHHHHH--------H-------CCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEec---cCC
Confidence 4568999999999998888775 3 35578999999 455444433221 11223443 578
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
+ ..+|. ++|++++...+|+.++. +..++|+..++.|+|||+|++.-...
T Consensus 262 ~-~~~p~-~~D~v~~~~vlh~~~d~-----------------------------~~~~~L~~~~~~L~pgG~l~i~e~~~ 310 (369)
T 3gwz_A 262 F-ETIPD-GADVYLIKHVLHDWDDD-----------------------------DVVRILRRIATAMKPDSRLLVIDNLI 310 (369)
T ss_dssp T-TCCCS-SCSEEEEESCGGGSCHH-----------------------------HHHHHHHHHHTTCCTTCEEEEEEEBC
T ss_pred C-CCCCC-CceEEEhhhhhccCCHH-----------------------------HHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 6 45666 89999999999986432 23478999999999999999987765
Q ss_pred CCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 197 PDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
++.... .....+ +.-|+..| -..++.+|+++++++. +|++.++..
T Consensus 311 ~~~~~~--------~~~~~d-~~~~~~~~------g~~~t~~e~~~ll~~a-Gf~~~~~~~ 355 (369)
T 3gwz_A 311 DERPAA--------STLFVD-LLLLVLVG------GAERSESEFAALLEKS-GLRVERSLP 355 (369)
T ss_dssp CSSCCH--------HHHHHH-HHHHHHHS------CCCBCHHHHHHHHHTT-TEEEEEEEE
T ss_pred CCCCCC--------chhHhh-HHHHhhcC------CccCCHHHHHHHHHHC-CCeEEEEEE
Confidence 543211 011111 11122223 3458999999999998 499988765
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.06 E-value=3.8e-10 Score=99.63 Aligned_cols=150 Identities=16% Similarity=0.091 Sum_probs=96.0
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC--------cceeeeccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS--------RSYYAAGVP 113 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~--------~~~f~~gvp 113 (329)
+..+|+|+|||+|..+..+.+ . .|..+++..|+........-+.+... +--|..+
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~--------~-------~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-- 91 (219)
T 3jwg_A 29 NAKKVIDLGCGEGNLLSLLLK--------D-------KSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQS-- 91 (219)
T ss_dssp TCCEEEEETCTTCHHHHHHHT--------S-------TTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEEC--
T ss_pred CCCEEEEecCCCCHHHHHHHh--------c-------CCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeC--
Confidence 457999999999999888864 1 23368999999877766655443311 1234443
Q ss_pred cccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 114 GSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 114 gsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
++....++++++|+|+++.++||+++ .++..+|+..++.|+|||+++.+.
T Consensus 92 -d~~~~~~~~~~fD~V~~~~~l~~~~~-----------------------------~~~~~~l~~~~~~LkpgG~~i~~~ 141 (219)
T 3jwg_A 92 -SLVYRDKRFSGYDAATVIEVIEHLDE-----------------------------NRLQAFEKVLFEFTRPQTVIVSTP 141 (219)
T ss_dssp -CSSSCCGGGTTCSEEEEESCGGGCCH-----------------------------HHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred -cccccccccCCCCEEEEHHHHHhCCH-----------------------------HHHHHHHHHHHHhhCCCEEEEEcc
Confidence 45444467789999999999999742 145688999999999999655544
Q ss_pred cccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCc-ccCCCHHHHH----HHHHhCCceEEeEEEE
Q 037735 194 FSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEK-MYNPTPKELE----GIIQRNGNFTIERMEK 257 (329)
Q Consensus 194 ~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~-~y~ps~eE~~----~~i~~~g~f~i~~~e~ 257 (329)
....+.. ... + ..+...... .+..+.+|+. .+++.. +|++.....
T Consensus 142 ~~~~~~~-~~~----------------~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-Gf~v~~~~~ 191 (219)
T 3jwg_A 142 NKEYNFH-YGN----------------L-FEGNLRHRDHRFEWTRKEFQTWAVKVAEKY-GYSVRFLQI 191 (219)
T ss_dssp BGGGGGC-CCC----------------T------GGGCCTTSBCHHHHHHHHHHHHHHH-TEEEEEEEE
T ss_pred chhhhhh-hcc----------------c-CcccccccCceeeecHHHHHHHHHHHHHHC-CcEEEEEec
Confidence 3222111 000 0 000001111 4456899999 666667 498876654
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.1e-10 Score=100.89 Aligned_cols=108 Identities=13% Similarity=0.134 Sum_probs=81.2
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC-cceeeeccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS-RSYYAAGVPGSFYSS 119 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~-~~~f~~gvpgsFy~~ 119 (329)
.+..+|+|+|||+|.++..+.. . ..+++..|+........-+.+... +-.|..+ ++. .
T Consensus 50 ~~~~~vLDiGcG~G~~~~~l~~--------~---------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~---d~~-~ 108 (216)
T 3ofk_A 50 GAVSNGLEIGCAAGAFTEKLAP--------H---------CKRLTVIDVMPRAIGRACQRTKRWSHISWAAT---DIL-Q 108 (216)
T ss_dssp SSEEEEEEECCTTSHHHHHHGG--------G---------EEEEEEEESCHHHHHHHHHHTTTCSSEEEEEC---CTT-T
T ss_pred CCCCcEEEEcCCCCHHHHHHHH--------c---------CCEEEEEECCHHHHHHHHHhcccCCCeEEEEc---chh-h
Confidence 4568999999999999888753 1 147999999887777665555432 2234444 453 3
Q ss_pred cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
+.|++++|+|+++.++||+.+.+ ++..+|+..++.|+|||.|+++++...
T Consensus 109 ~~~~~~fD~v~~~~~l~~~~~~~----------------------------~~~~~l~~~~~~L~pgG~l~~~~~~~~ 158 (216)
T 3ofk_A 109 FSTAELFDLIVVAEVLYYLEDMT----------------------------QMRTAIDNMVKMLAPGGHLVFGSARDA 158 (216)
T ss_dssp CCCSCCEEEEEEESCGGGSSSHH----------------------------HHHHHHHHHHHTEEEEEEEEEEEECHH
T ss_pred CCCCCCccEEEEccHHHhCCCHH----------------------------HHHHHHHHHHHHcCCCCEEEEEecCCC
Confidence 34889999999999999976532 456789999999999999999887543
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.3e-09 Score=100.73 Aligned_cols=155 Identities=16% Similarity=0.128 Sum_probs=102.5
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC----CCcceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP----QSRSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~----~~~~~f~~gvpgsF 116 (329)
.+..+|+|+|||+|..+..+.+ + .|..+++..|++ ......-+.+. ..+--|.. +++
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~--------~-------~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~---~d~ 224 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQ--------H-------NPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIA---GSA 224 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHH--------H-------CTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEE---SCT
T ss_pred CCCCEEEEECCCcCHHHHHHHH--------H-------CCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEe---ccc
Confidence 4567999999999998887764 2 244689999998 66555443321 11123444 467
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
.+..+|.+ +|+++++..+|.+++ .+...+|+..++.|+|||++++.-+..
T Consensus 225 ~~~~~~~~-~D~v~~~~~l~~~~~-----------------------------~~~~~~l~~~~~~L~pgG~l~i~e~~~ 274 (335)
T 2r3s_A 225 FEVDYGND-YDLVLLPNFLHHFDV-----------------------------ATCEQLLRKIKTALAVEGKVIVFDFIP 274 (335)
T ss_dssp TTSCCCSC-EEEEEEESCGGGSCH-----------------------------HHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred ccCCCCCC-CcEEEEcchhccCCH-----------------------------HHHHHHHHHHHHhCCCCcEEEEEeecC
Confidence 65445554 999999999997532 245688999999999999999988766
Q ss_pred CCCCcccCCcccchHHHHHHHHHHHHhc-CCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 197 PDGIPLVNNAAGSFYNTFGSCLVELTKM-GILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~l~~a~~~l~~e-G~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
++.... ..+..+.+.+ -+... + ...++.+|+.+++++.| |++.++...
T Consensus 275 ~~~~~~------~~~~~~~~~~-~~~~~~~------~~~~t~~~~~~ll~~aG-f~~~~~~~~ 323 (335)
T 2r3s_A 275 NSDRIT------PPDAAAFSLV-MLATTPN------GDAYTFAEYESMFSNAG-FSHSQLHSL 323 (335)
T ss_dssp CTTSSC------SHHHHHHHHH-HHHHSSS------CCCCCHHHHHHHHHHTT-CSEEEEECC
T ss_pred CCCcCC------chHHHHHHHH-HHeeCCC------CCcCCHHHHHHHHHHCC-CCeeeEEEC
Confidence 542211 1122222221 12221 2 34579999999999995 998876543
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.6e-09 Score=101.39 Aligned_cols=151 Identities=11% Similarity=0.134 Sum_probs=99.5
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CC-Ccceeeecccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQ-SRSYYAAGVPGSFYS 118 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~-~~~~f~~gvpgsFy~ 118 (329)
..+|+|+|||+|..+..+.+ + .|..+++.-|+| ......-+.+ +. .+--|. .++|++
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~--------~-------~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~---~~d~~~ 240 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLR--------R-------HPQLTGQIWDLP-TTRDAARKTIHAHDLGGRVEFF---EKNLLD 240 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHH--------H-------CTTCEEEEEECG-GGHHHHHHHHHHTTCGGGEEEE---ECCTTC
T ss_pred CCEEEEeCCCcCHHHHHHHH--------h-------CCCCeEEEEECH-HHHHHHHHHHHhcCCCCceEEE---eCCccc
Confidence 68999999999999988875 3 345789999995 3444332222 11 112233 357765
Q ss_pred cc-CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 119 SL-FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 119 ~l-fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
.. ++++++|+++++..+|++++ .+...+|+..++.|+|||++++.-...+
T Consensus 241 ~~~~~~~~~D~v~~~~vlh~~~~-----------------------------~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 291 (352)
T 3mcz_A 241 ARNFEGGAADVVMLNDCLHYFDA-----------------------------REAREVIGHAAGLVKPGGALLILTMTMN 291 (352)
T ss_dssp GGGGTTCCEEEEEEESCGGGSCH-----------------------------HHHHHHHHHHHHTEEEEEEEEEEEECCC
T ss_pred CcccCCCCccEEEEecccccCCH-----------------------------HHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 44 35677999999999998642 1345889999999999999999877655
Q ss_pred CCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeE
Q 037735 198 DGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIER 254 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~ 254 (329)
+... ...+..+.+...-....+ -..++.+|+++++++.| |++++
T Consensus 292 ~~~~------~~~~~~~~~~~~~~~~~~------~~~~t~~e~~~ll~~aG-f~~~~ 335 (352)
T 3mcz_A 292 DDRV------TPALSADFSLHMMVNTNH------GELHPTPWIAGVVRDAG-LAVGE 335 (352)
T ss_dssp TTSS------SSHHHHHHHHHHHHHSTT------CCCCCHHHHHHHHHHTT-CEEEE
T ss_pred CCCC------CCchHHHhhHHHHhhCCC------CCcCCHHHHHHHHHHCC-Cceee
Confidence 4321 112222222222111212 23579999999999995 99887
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1.8e-09 Score=95.28 Aligned_cols=149 Identities=15% Similarity=0.104 Sum_probs=94.8
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC--------cceeeeccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS--------RSYYAAGVP 113 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~--------~~~f~~gvp 113 (329)
+..+|+|+|||+|.++..+.+ + .|..+++..|+........-+.+... +--|..+
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~--------~-------~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-- 91 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKILLK--------D-------SFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQG-- 91 (217)
T ss_dssp TCCEEEEETCTTCHHHHHHHH--------C-------TTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEEC--
T ss_pred CCCEEEEeCCCCCHHHHHHHh--------h-------CCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeC--
Confidence 457999999999999988864 2 23358999999887776665544311 1234443
Q ss_pred cccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 114 GSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 114 gsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
++....++.+++|+|+++.++||+.+ .++..+|+..++.|+|||+++++.
T Consensus 92 -d~~~~~~~~~~fD~v~~~~~l~~~~~-----------------------------~~~~~~l~~~~~~LkpgG~li~~~ 141 (217)
T 3jwh_A 92 -ALTYQDKRFHGYDAATVIEVIEHLDL-----------------------------SRLGAFERVLFEFAQPKIVIVTTP 141 (217)
T ss_dssp -CTTSCCGGGCSCSEEEEESCGGGCCH-----------------------------HHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred -CcccccccCCCcCEEeeHHHHHcCCH-----------------------------HHHHHHHHHHHHHcCCCEEEEEcc
Confidence 45333456689999999999999742 255688999999999999666654
Q ss_pred cccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCc-ccCCCHHHHH----HHHHhCCceEEeEEE
Q 037735 194 FSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEK-MYNPTPKELE----GIIQRNGNFTIERME 256 (329)
Q Consensus 194 ~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~-~y~ps~eE~~----~~i~~~g~f~i~~~e 256 (329)
...-+ ..|..+.. +...... .+..+.+|+. .+++.. +|+++...
T Consensus 142 ~~~~~-----------------~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~-Gf~v~~~~ 190 (217)
T 3jwh_A 142 NIEYN-----------------VKFANLPA-GKLRHKDHRFEWTRSQFQNWANKITERF-AYNVQFQP 190 (217)
T ss_dssp BHHHH-----------------HHTC------------CCSCBCHHHHHHHHHHHHHHS-SEEEEECC
T ss_pred Ccccc-----------------hhhccccc-ccccccccccccCHHHHHHHHHHHHHHc-CceEEEEe
Confidence 32111 00111110 1111111 4556899999 666777 59886543
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.02 E-value=7e-10 Score=96.50 Aligned_cols=139 Identities=15% Similarity=0.113 Sum_probs=96.3
Q ss_pred EEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--CcceeeeccccccccccCC
Q 037735 45 RIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--SRSYYAAGVPGSFYSSLFP 122 (329)
Q Consensus 45 ~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--~~~~f~~gvpgsFy~~lfp 122 (329)
+|+|+|||+|.++..+.+ . ..+++..|+........-+.+.. .+..|.. +++.+-.+|
T Consensus 32 ~vLdiGcG~G~~~~~l~~--------~---------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~---~d~~~~~~~ 91 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLAS--------L---------GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQ---SNLADFDIV 91 (202)
T ss_dssp EEEECCCSCTHHHHHHHT--------T---------TCEEEEECSSHHHHHHHHHHHHHHTCCEEEEC---CBTTTBSCC
T ss_pred CEEEECCCCCHhHHHHHh--------C---------CCeEEEEECCHHHHHHHHHHHHhcCCceEEEE---cChhhcCCC
Confidence 999999999999887753 1 14899999987666554443321 1122333 356444578
Q ss_pred CCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCCcc
Q 037735 123 KSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPL 202 (329)
Q Consensus 123 ~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~ 202 (329)
++++|+|+++. .|| + ..|...+|+...+.|+|||.+++..+.+.+...
T Consensus 92 ~~~fD~v~~~~-~~~----~--------------------------~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~- 139 (202)
T 2kw5_A 92 ADAWEGIVSIF-CHL----P--------------------------SSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQY- 139 (202)
T ss_dssp TTTCSEEEEEC-CCC----C--------------------------HHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGG-
T ss_pred cCCccEEEEEh-hcC----C--------------------------HHHHHHHHHHHHHhcCCCcEEEEEEeccccccC-
Confidence 89999999964 444 2 125568899999999999999999988665210
Q ss_pred cCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEee
Q 037735 203 VNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMT 259 (329)
Q Consensus 203 ~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~ 259 (329)
..|. .....++.+.+|+.+.++ +|+++.++...
T Consensus 140 --------------------~~~~-~~~~~~~~~~~~l~~~l~---Gf~v~~~~~~~ 172 (202)
T 2kw5_A 140 --------------------NTGG-PKDLDLLPKLETLQSELP---SLNWLIANNLE 172 (202)
T ss_dssp --------------------TSCC-SSSGGGCCCHHHHHHHCS---SSCEEEEEEEE
T ss_pred --------------------CCCC-CCcceeecCHHHHHHHhc---CceEEEEEEEE
Confidence 0010 001167789999999998 59999988764
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=6.8e-09 Score=99.94 Aligned_cols=154 Identities=16% Similarity=0.142 Sum_probs=99.5
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeecccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~l 120 (329)
.+..+|+|+|||+|..+..+.+ + .|..+++..|+| ..... .+.. .+--|. .|+|++ .
T Consensus 202 ~~~~~vlDvG~G~G~~~~~l~~--------~-------~p~~~~~~~D~~-~~~~~-a~~~--~~v~~~---~~d~~~-~ 258 (368)
T 3reo_A 202 EGLTTIVDVGGGTGAVASMIVA--------K-------YPSINAINFDLP-HVIQD-APAF--SGVEHL---GGDMFD-G 258 (368)
T ss_dssp TTCSEEEEETCTTSHHHHHHHH--------H-------CTTCEEEEEECH-HHHTT-CCCC--TTEEEE---ECCTTT-C
T ss_pred cCCCEEEEeCCCcCHHHHHHHH--------h-------CCCCEEEEEehH-HHHHh-hhhc--CCCEEE---ecCCCC-C
Confidence 3457999999999999998875 3 355789999994 33222 1211 122344 457876 6
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCC
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGI 200 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~ 200 (329)
+|++ |+++++.++|++++ .+..++|+..++.|+|||+|++.-+-.++..
T Consensus 259 ~p~~--D~v~~~~vlh~~~~-----------------------------~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~ 307 (368)
T 3reo_A 259 VPKG--DAIFIKWICHDWSD-----------------------------EHCLKLLKNCYAALPDHGKVIVAEYILPPSP 307 (368)
T ss_dssp CCCC--SEEEEESCGGGBCH-----------------------------HHHHHHHHHHHHHSCTTCEEEEEECCCCSSC
T ss_pred CCCC--CEEEEechhhcCCH-----------------------------HHHHHHHHHHHHHcCCCCEEEEEEeccCCCC
Confidence 7765 99999999996542 2445889999999999999999876544321
Q ss_pred cccCCcccchHHHHHHHHHHHHh-cCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEee
Q 037735 201 PLVNNAAGSFYNTFGSCLVELTK-MGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMT 259 (329)
Q Consensus 201 ~~~~~~~~~~~~~l~~a~~~l~~-eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~ 259 (329)
.. . . ........-+.-|+. .| -..++.+|+++++++.| |++.++....
T Consensus 308 ~~--~-~-~~~~~~~~d~~~~~~~~~------g~~rt~~e~~~ll~~AG-F~~v~~~~~~ 356 (368)
T 3reo_A 308 DP--S-I-ATKVVIHTDALMLAYNPG------GKERTEKEFQALAMASG-FRGFKVASCA 356 (368)
T ss_dssp CC--C-H-HHHHHHHHHHHHHHHSSB------CCCCCHHHHHHHHHHTT-CCEEEEEEEE
T ss_pred CC--c-h-hhhHHHhhhHHHHhhcCC------CccCCHHHHHHHHHHCC-CeeeEEEEeC
Confidence 11 0 0 000011111122221 12 24579999999999995 9988876553
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.4e-09 Score=96.55 Aligned_cols=148 Identities=16% Similarity=0.164 Sum_probs=100.9
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCc---------------
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSR--------------- 105 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~--------------- 105 (329)
.+..+|||+|||+|..+..+.. . .+ .+|+..|+..++...+-+.+....
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~--------~-------~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 118 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSAC--------E-------SF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDL 118 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGG--------G-------TE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhh--------c-------cc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcc
Confidence 3568999999999999988753 1 12 379999998877666544443221
Q ss_pred -----------------c-eeeecccccccccc-CCC---CceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHH
Q 037735 106 -----------------S-YYAAGVPGSFYSSL-FPK---SSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEA 163 (329)
Q Consensus 106 -----------------~-~f~~gvpgsFy~~l-fp~---~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~a 163 (329)
- -|.. +++.+.. +++ +++|+|+|+.++|++..-
T Consensus 119 ~~~~~~~~~~~~~l~~~v~~~~~---~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~---------------------- 173 (265)
T 2i62_A 119 EGNRMKGPEKEEKLRRAIKQVLK---CDVTQSQPLGGVSLPPADCLLSTLCLDAACPD---------------------- 173 (265)
T ss_dssp TTTCSCHHHHHHHHHHHEEEEEE---CCTTSSSTTTTCCCCCEEEEEEESCHHHHCSS----------------------
T ss_pred cccccchHHHHHHhhhhheeEEE---eeeccCCCCCccccCCccEEEEhhhhhhhcCC----------------------
Confidence 1 2333 3454432 356 899999999999976421
Q ss_pred HHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCc-ccCCCHHHHHH
Q 037735 164 YAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEK-MYNPTPKELEG 242 (329)
Q Consensus 164 y~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~-~y~ps~eE~~~ 242 (329)
..|...+|+..++.|+|||+|++......+... .| .... .+..+.+++.+
T Consensus 174 -----~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~----------------------~~--~~~~~~~~~~~~~~~~ 224 (265)
T 2i62_A 174 -----LPAYRTALRNLGSLLKPGGFLVMVDALKSSYYM----------------------IG--EQKFSSLPLGWETVRD 224 (265)
T ss_dssp -----HHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEE----------------------ET--TEEEECCCCCHHHHHH
T ss_pred -----hHHHHHHHHHHHhhCCCCcEEEEEecCCCceEE----------------------cC--CccccccccCHHHHHH
Confidence 125668899999999999999999854332100 01 0000 34568999999
Q ss_pred HHHhCCceEEeEEEEee
Q 037735 243 IIQRNGNFTIERMEKMT 259 (329)
Q Consensus 243 ~i~~~g~f~i~~~e~~~ 259 (329)
++++.| |+++.++...
T Consensus 225 ~l~~aG-f~~~~~~~~~ 240 (265)
T 2i62_A 225 AVEEAG-YTIEQFEVIS 240 (265)
T ss_dssp HHHHTT-CEEEEEEEEC
T ss_pred HHHHCC-CEEEEEEEec
Confidence 999984 9999988764
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=8.8e-09 Score=99.08 Aligned_cols=152 Identities=15% Similarity=0.146 Sum_probs=99.4
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccC
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLF 121 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lf 121 (329)
+..+|+|+|||+|..+..+.+ + .|..+++..|+|. .... .+.. .+--|. .|+|++ .+
T Consensus 201 ~~~~vlDvG~G~G~~~~~l~~--------~-------~p~~~~~~~D~~~-~~~~-a~~~--~~v~~~---~~D~~~-~~ 257 (364)
T 3p9c_A 201 GLGTLVDVGGGVGATVAAIAA--------H-------YPTIKGVNFDLPH-VISE-APQF--PGVTHV---GGDMFK-EV 257 (364)
T ss_dssp TCSEEEEETCTTSHHHHHHHH--------H-------CTTCEEEEEECHH-HHTT-CCCC--TTEEEE---ECCTTT-CC
T ss_pred CCCEEEEeCCCCCHHHHHHHH--------H-------CCCCeEEEecCHH-HHHh-hhhc--CCeEEE---eCCcCC-CC
Confidence 467999999999999988875 3 3557899999952 3221 1111 122344 458877 67
Q ss_pred CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCCc
Q 037735 122 PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIP 201 (329)
Q Consensus 122 p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~ 201 (329)
|++ |+++++.+||..++ .|...+|+..++.|+|||+|++.-...++...
T Consensus 258 p~~--D~v~~~~vlh~~~d-----------------------------~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~ 306 (364)
T 3p9c_A 258 PSG--DTILMKWILHDWSD-----------------------------QHCATLLKNCYDALPAHGKVVLVQCILPVNPE 306 (364)
T ss_dssp CCC--SEEEEESCGGGSCH-----------------------------HHHHHHHHHHHHHSCTTCEEEEEECCBCSSCC
T ss_pred CCC--CEEEehHHhccCCH-----------------------------HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCC
Confidence 865 99999999985432 24558899999999999999998765443211
Q ss_pred ccCCcccchHH-HHHHHHHHHH-hcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEee
Q 037735 202 LVNNAAGSFYN-TFGSCLVELT-KMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMT 259 (329)
Q Consensus 202 ~~~~~~~~~~~-~l~~a~~~l~-~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~ 259 (329)
. ..... ....-+.-|+ ..| -..+|.+|+++++++.| |++.++....
T Consensus 307 ~-----~~~~~~~~~~d~~m~~~~~~------g~~rt~~e~~~ll~~AG-F~~v~~~~~~ 354 (364)
T 3p9c_A 307 A-----NPSSQGVFHVDMIMLAHNPG------GRERYEREFQALARGAG-FTGVKSTYIY 354 (364)
T ss_dssp S-----SHHHHHHHHHHHHHHHHCSS------CCCCBHHHHHHHHHHTT-CCEEEEEEEE
T ss_pred c-----chhhhhHHHhHHHHHhcccC------CccCCHHHHHHHHHHCC-CceEEEEEcC
Confidence 1 00110 0111122221 122 23479999999999995 9998877553
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=8.9e-10 Score=95.00 Aligned_cols=139 Identities=14% Similarity=0.201 Sum_probs=94.2
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|.++..+.+ . ..+++..|+........-+... ....-+..+ ++.+
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~--------~---------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~---d~~~ 91 (199)
T 2xvm_A 32 KPGKTLDLGCGNGRNSLYLAA--------N---------GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVV---DLNN 91 (199)
T ss_dssp CSCEEEEETCTTSHHHHHHHH--------T---------TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEEC---CGGG
T ss_pred CCCeEEEEcCCCCHHHHHHHH--------C---------CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEc---chhh
Confidence 346999999999999888764 1 1479999998766555433321 111223333 5544
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCC
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
..+ ++++|+|+++.++||++. .|...+|+..++.|+|||++++......+
T Consensus 92 ~~~-~~~~D~v~~~~~l~~~~~-----------------------------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 141 (199)
T 2xvm_A 92 LTF-DRQYDFILSTVVLMFLEA-----------------------------KTIPGLIANMQRCTKPGGYNLIVAAMDTA 141 (199)
T ss_dssp CCC-CCCEEEEEEESCGGGSCG-----------------------------GGHHHHHHHHHHTEEEEEEEEEEEEBCCS
T ss_pred CCC-CCCceEEEEcchhhhCCH-----------------------------HHHHHHHHHHHHhcCCCeEEEEEEeeccC
Confidence 334 789999999999999752 25568899999999999998876654332
Q ss_pred CCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 199 GIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
..+.. .. ..+..+.+|+++.++. |++++.+..
T Consensus 142 ~~~~~--------------------~~-----~~~~~~~~~l~~~~~~---f~~~~~~~~ 173 (199)
T 2xvm_A 142 DYPCT--------------------VG-----FPFAFKEGELRRYYEG---WERVKYNED 173 (199)
T ss_dssp SSCCC--------------------SC-----CSCCBCTTHHHHHTTT---SEEEEEECC
T ss_pred CcCCC--------------------CC-----CCCccCHHHHHHHhcC---CeEEEeccc
Confidence 21110 00 0345689999999874 999887643
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.5e-09 Score=102.64 Aligned_cols=155 Identities=17% Similarity=0.141 Sum_probs=100.4
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC----Ccceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ----SRSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~----~~~~f~~gvpgsF 116 (329)
....+|+|+|||+|..+..+.+ + .|..+++..|+ .......-+.+.. .+--|. .++|
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~--------~-------~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~---~~d~ 238 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQ--------Y-------NKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGH---GANL 238 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHH--------H-------STTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEE---ECCC
T ss_pred cCCCEEEEeCCCcCHHHHHHHH--------h-------CCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEE---Eccc
Confidence 3567999999999999988875 3 35578999999 4454444333322 122344 3578
Q ss_pred ccc--cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 117 YSS--LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 117 y~~--lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
++. .+| +++|+++++..+|.+++ .+...+|+..++.|+|||++++.-.
T Consensus 239 ~~~~~~~p-~~~D~v~~~~vlh~~~~-----------------------------~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (363)
T 3dp7_A 239 LDRDVPFP-TGFDAVWMSQFLDCFSE-----------------------------EEVISILTRVAQSIGKDSKVYIMET 288 (363)
T ss_dssp CSSSCCCC-CCCSEEEEESCSTTSCH-----------------------------HHHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred cccCCCCC-CCcCEEEEechhhhCCH-----------------------------HHHHHHHHHHHHhcCCCcEEEEEee
Confidence 754 366 88999999999985432 2445889999999999999998765
Q ss_pred ccCCCCcccCCcccchHHHHHHHHHHH--HhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEE
Q 037735 195 SVPDGIPLVNNAAGSFYNTFGSCLVEL--TKMGILSKEKMYNPTPKELEGIIQRNGNFTIERME 256 (329)
Q Consensus 195 g~~~~~~~~~~~~~~~~~~l~~a~~~l--~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e 256 (329)
..++.... ...+. +......+ ...+- -..++.+|+++++++.| |+++++.
T Consensus 289 ~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~-----~~~~t~~e~~~ll~~AG-f~~v~~~ 340 (363)
T 3dp7_A 289 LWDRQRYE-----TASYC-LTQISLYFTAMANGN-----SKMFHSDDLIRCIENAG-LEVEEIQ 340 (363)
T ss_dssp CTTSCSSH-----HHHHH-HHHHHHHHHHSSCSS-----CCSCCHHHHHHHHHTTT-EEESCCC
T ss_pred ccCCcccc-----chhhH-HHHhhhhHHhhhCCC-----CcccCHHHHHHHHHHcC-CeEEEEE
Confidence 54432110 00111 11111111 11110 33569999999999984 9987765
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.9e-08 Score=94.77 Aligned_cols=149 Identities=15% Similarity=0.180 Sum_probs=98.5
Q ss_pred eEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC----Ccceeeeccccccccc
Q 037735 44 FRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ----SRSYYAAGVPGSFYSS 119 (329)
Q Consensus 44 ~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~----~~~~f~~gvpgsFy~~ 119 (329)
.+|+|+|||+|..+..+.+ + .|..+++..|+ .......-+.+.. .+--|.. +++.+
T Consensus 169 ~~vlDvG~G~G~~~~~l~~--------~-------~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~---~d~~~- 228 (334)
T 2ip2_A 169 RSFVDVGGGSGELTKAILQ--------A-------EPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVG---GDMLQ- 228 (334)
T ss_dssp CEEEEETCTTCHHHHHHHH--------H-------CTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEE---SCTTT-
T ss_pred CEEEEeCCCchHHHHHHHH--------H-------CCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEec---CCCCC-
Confidence 8999999999998888864 2 24568999999 5555554333321 1223433 57866
Q ss_pred cCCCCceeEEEecccee-cccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCC
Q 037735 120 LFPKSSLHFVHSSYTLH-WLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alh-WLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
.+| +++|++++...+| | ++ .+...+|+..++.|+|||+|++.-...++
T Consensus 229 ~~~-~~~D~v~~~~vl~~~-~~-----------------------------~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 277 (334)
T 2ip2_A 229 EVP-SNGDIYLLSRIIGDL-DE-----------------------------AASLRLLGNCREAMAGDGRVVVIERTISA 277 (334)
T ss_dssp CCC-SSCSEEEEESCGGGC-CH-----------------------------HHHHHHHHHHHHHSCTTCEEEEEECCBCS
T ss_pred CCC-CCCCEEEEchhccCC-CH-----------------------------HHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence 456 6899999999998 5 21 13358899999999999999999776543
Q ss_pred CCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 199 GIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
.... .+..+.+. .-+...+ -..++.+|+.+++++.| |++.++...
T Consensus 278 ~~~~-------~~~~~~~~-~~~~~~~------~~~~t~~e~~~ll~~aG-f~~~~~~~~ 322 (334)
T 2ip2_A 278 SEPS-------PMSVLWDV-HLFMACA------GRHRTTEEVVDLLGRGG-FAVERIVDL 322 (334)
T ss_dssp SSCC-------HHHHHHHH-HHHHHHS------CCCCBHHHHHHHHHHTT-EEEEEEEEE
T ss_pred CCCc-------chhHHhhh-HhHhhCC------CcCCCHHHHHHHHHHCC-CceeEEEEC
Confidence 2210 11111111 1112112 23469999999999995 998877654
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.1e-09 Score=96.39 Aligned_cols=154 Identities=16% Similarity=0.058 Sum_probs=101.2
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeecccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~l 120 (329)
.+..+|||+|||+|.++..+.. . .+ +|+..|+...+....-+..+..+--|+.+ ++.+..
T Consensus 55 ~~~~~vLD~GcG~G~~~~~la~--------~-------~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~---d~~~~~ 114 (245)
T 3ggd_A 55 NPELPLIDFACGNGTQTKFLSQ--------F-------FP--RVIGLDVSKSALEIAAKENTAANISYRLL---DGLVPE 114 (245)
T ss_dssp CTTSCEEEETCTTSHHHHHHHH--------H-------SS--CEEEEESCHHHHHHHHHHSCCTTEEEEEC---CTTCHH
T ss_pred CCCCeEEEEcCCCCHHHHHHHH--------h-------CC--CEEEEECCHHHHHHHHHhCcccCceEEEC---cccccc
Confidence 3457899999999999998875 2 12 68999998877776666554333335544 343322
Q ss_pred CC-----CCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 121 FP-----KSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 121 fp-----~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
++ ..++|+++++.++||++. .|...+|+..++.|+|||+|++..++
T Consensus 115 ~~~~~~~~~~~d~v~~~~~~~~~~~-----------------------------~~~~~~l~~~~~~LkpgG~l~i~~~~ 165 (245)
T 3ggd_A 115 QAAQIHSEIGDANIYMRTGFHHIPV-----------------------------EKRELLGQSLRILLGKQGAMYLIELG 165 (245)
T ss_dssp HHHHHHHHHCSCEEEEESSSTTSCG-----------------------------GGHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred cccccccccCccEEEEcchhhcCCH-----------------------------HHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 22 134899999999999742 25568899999999999999999887
Q ss_pred cCCCCcccCCcccchHHHHHH-------HHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEee
Q 037735 196 VPDGIPLVNNAAGSFYNTFGS-------CLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMT 259 (329)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~l~~-------a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~ 259 (329)
..+.. ++..+.. .+..+...|.. ....+.+|+.+.+ . +|+++......
T Consensus 166 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--a-Gf~~~~~~~~~ 220 (245)
T 3ggd_A 166 TGCID---------FFNSLLEKYGQLPYELLLVMEHGIR----PGIFTAEDIELYF--P-DFEILSQGEGL 220 (245)
T ss_dssp TTHHH---------HHHHHHHHHSSCCHHHHHHHTTTCC----CCCCCHHHHHHHC--T-TEEEEEEECCB
T ss_pred ccccH---------HHHHHHhCCCCCchhhhhccccCCC----CCccCHHHHHHHh--C-CCEEEeccccc
Confidence 65421 1111111 11122222211 2335899999998 4 69998877543
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=8e-09 Score=99.26 Aligned_cols=150 Identities=17% Similarity=0.168 Sum_probs=97.8
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeecccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~l 120 (329)
.+..+|+|+|||+|..+..+.+ + .|..+++.-|+ ...... .+..+ +--|. .++|++ .
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~--------~-------~~~~~~~~~D~-~~~~~~-a~~~~--~v~~~---~~d~~~-~ 264 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIIS--------K-------YPLIKGINFDL-PQVIEN-APPLS--GIEHV---GGDMFA-S 264 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHH--------H-------CTTCEEEEEEC-HHHHTT-CCCCT--TEEEE---ECCTTT-C
T ss_pred CCCCEEEEeCCCCcHHHHHHHH--------H-------CCCCeEEEeCh-HHHHHh-hhhcC--CCEEE---eCCccc-C
Confidence 3467999999999999988875 3 34578899999 334322 22222 12233 457876 5
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCC
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGI 200 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~ 200 (329)
+|. +|+++++.+||++++. +...+|+..++.|+|||+|++.-+..++..
T Consensus 265 ~~~--~D~v~~~~~lh~~~d~-----------------------------~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~ 313 (372)
T 1fp1_D 265 VPQ--GDAMILKAVCHNWSDE-----------------------------KCIEFLSNCHKALSPNGKVIIVEFILPEEP 313 (372)
T ss_dssp CCC--EEEEEEESSGGGSCHH-----------------------------HHHHHHHHHHHHEEEEEEEEEEEEEECSSC
T ss_pred CCC--CCEEEEecccccCCHH-----------------------------HHHHHHHHHHHhcCCCCEEEEEEeccCCCC
Confidence 665 8999999999975431 234889999999999999999866544321
Q ss_pred cccCCcccchHHHHHHHHHHH---HhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 201 PLVNNAAGSFYNTFGSCLVEL---TKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 201 ~~~~~~~~~~~~~l~~a~~~l---~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
.. ...+.. ..+.++ +..| -..++.+|+++++++.| |++.++...
T Consensus 314 ~~------~~~~~~-~~~~d~~~~~~~~------~~~~t~~e~~~ll~~aG-f~~~~~~~~ 360 (372)
T 1fp1_D 314 NT------SEESKL-VSTLDNLMFITVG------GRERTEKQYEKLSKLSG-FSKFQVACR 360 (372)
T ss_dssp CS------SHHHHH-HHHHHHHHHHHHS------CCCEEHHHHHHHHHHTT-CSEEEEEEE
T ss_pred cc------chHHHH-HHHhhHHHHhccC------CccCCHHHHHHHHHHCC-CceEEEEEc
Confidence 10 011100 111111 1222 23469999999999994 998877653
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=3.9e-09 Score=100.88 Aligned_cols=154 Identities=20% Similarity=0.218 Sum_probs=99.2
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC----Ccceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ----SRSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~----~~~~f~~gvpgsF 116 (329)
.+..+|+|+|||+|..+..+.+ + .|..+++..|+ .......-+.+.. .+--|.. +++
T Consensus 181 ~~~~~vlDvG~G~G~~~~~l~~--------~-------~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~---~d~ 241 (374)
T 1qzz_A 181 SAVRHVLDVGGGNGGMLAAIAL--------R-------APHLRGTLVEL-AGPAERARRRFADAGLADRVTVAE---GDF 241 (374)
T ss_dssp TTCCEEEEETCTTSHHHHHHHH--------H-------CTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEE---CCT
T ss_pred CCCCEEEEECCCcCHHHHHHHH--------H-------CCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEe---CCC
Confidence 3467999999999998888865 2 24578999999 6665554333211 1223444 467
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec--
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF-- 194 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~-- 194 (329)
.+ .+|.+ +|+++++..+|++++. +...+|+..++.|+|||++++.-+
T Consensus 242 ~~-~~~~~-~D~v~~~~vl~~~~~~-----------------------------~~~~~l~~~~~~L~pgG~l~i~e~~~ 290 (374)
T 1qzz_A 242 FK-PLPVT-ADVVLLSFVLLNWSDE-----------------------------DALTILRGCVRALEPGGRLLVLDRAD 290 (374)
T ss_dssp TS-CCSCC-EEEEEEESCGGGSCHH-----------------------------HHHHHHHHHHHHEEEEEEEEEEECCH
T ss_pred CC-cCCCC-CCEEEEeccccCCCHH-----------------------------HHHHHHHHHHHhcCCCcEEEEEechh
Confidence 65 45654 9999999999874421 234789999999999999999877
Q ss_pred ccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEee
Q 037735 195 SVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMT 259 (329)
Q Consensus 195 g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~ 259 (329)
..++... ..+..+.+.+. ++..| -..++.+|+.+++++.| |++.++....
T Consensus 291 ~~~~~~~-------~~~~~~~~~~~-~~~~~------~~~~~~~~~~~ll~~aG-f~~~~~~~~~ 340 (374)
T 1qzz_A 291 VEGDGAD-------RFFSTLLDLRM-LTFMG------GRVRTRDEVVDLAGSAG-LALASERTSG 340 (374)
T ss_dssp --------------HHHHHHHHHHH-HHHHS------CCCCCHHHHHHHHHTTT-EEEEEEEEEC
T ss_pred hcCCCCC-------cchhhhcchHH-HHhCC------CcCCCHHHHHHHHHHCC-CceEEEEECC
Confidence 4322110 11111111111 12223 34589999999999884 9998887653
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.1e-09 Score=103.04 Aligned_cols=112 Identities=11% Similarity=0.136 Sum_probs=77.2
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC--c-------ceeeec-
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS--R-------SYYAAG- 111 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~--~-------~~f~~g- 111 (329)
...+|||+|||+|..+..++. ....+|+..|+...+....-+..+.. . .-|..+
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~----------------~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d 111 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFY----------------GEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQET 111 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHH----------------TTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECC
T ss_pred CCCeEEEEecCCcHhHHHHHh----------------cCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhh
Confidence 457999999999987766542 11247999999988877654432110 0 013222
Q ss_pred cccccc-cc---cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCc
Q 037735 112 VPGSFY-SS---LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGG 187 (329)
Q Consensus 112 vpgsFy-~~---lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG 187 (329)
+-++.+ +. .+|++++|+|+|..++||+-+.+ |...+|+..++.|+|||
T Consensus 112 ~~~d~~~~~l~~~~~~~~FD~V~~~~~lhy~~~~~----------------------------~~~~~l~~~~r~LkpGG 163 (302)
T 2vdw_A 112 IRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPR----------------------------HYATVMNNLSELTASGG 163 (302)
T ss_dssp TTSSSHHHHHHTTCCSSCEEEEEEESCGGGTCSTT----------------------------THHHHHHHHHHHEEEEE
T ss_pred cccchhhhhhhccccCCCeeEEEECchHHHhCCHH----------------------------HHHHHHHHHHHHcCCCC
Confidence 222332 22 36889999999999999974433 33588999999999999
Q ss_pred eEEEEecccC
Q 037735 188 LAALVMFSVP 197 (329)
Q Consensus 188 ~l~~~~~g~~ 197 (329)
+|+++++.+.
T Consensus 164 ~~i~~~~~~~ 173 (302)
T 2vdw_A 164 KVLITTMDGD 173 (302)
T ss_dssp EEEEEEECHH
T ss_pred EEEEEeCCHH
Confidence 9999998643
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.1e-08 Score=98.12 Aligned_cols=151 Identities=16% Similarity=0.179 Sum_probs=98.4
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---Ccceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---SRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~~~~f~~gvpgsFy~ 118 (329)
...+|+|+|||+|..+..+++ + .|..+++.-|+|. .....-+.+.. .+--| ++|+|++
T Consensus 179 ~~~~v~DvGgG~G~~~~~l~~--------~-------~p~~~~~~~dlp~-v~~~a~~~~~~~~~~rv~~---~~gD~~~ 239 (353)
T 4a6d_A 179 VFPLMCDLGGGAGALAKECMS--------L-------YPGCKITVFDIPE-VVWTAKQHFSFQEEEQIDF---QEGDFFK 239 (353)
T ss_dssp GCSEEEEETCTTSHHHHHHHH--------H-------CSSCEEEEEECHH-HHHHHHHHSCC--CCSEEE---EESCTTT
T ss_pred cCCeEEeeCCCCCHHHHHHHH--------h-------CCCceeEeccCHH-HHHHHHHhhhhcccCceee---ecCcccc
Confidence 456899999999998888875 4 4668899999984 32222222221 12223 4578987
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCC
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
..+| ..|+++.+..||-.++ .+-.++|+..++.|+|||++++.=.-.++
T Consensus 240 ~~~~--~~D~~~~~~vlh~~~d-----------------------------~~~~~iL~~~~~al~pgg~lli~e~~~~~ 288 (353)
T 4a6d_A 240 DPLP--EADLYILARVLHDWAD-----------------------------GKCSHLLERIYHTCKPGGGILVIESLLDE 288 (353)
T ss_dssp SCCC--CCSEEEEESSGGGSCH-----------------------------HHHHHHHHHHHHHCCTTCEEEEEECCCCT
T ss_pred CCCC--CceEEEeeeecccCCH-----------------------------HHHHHHHHHHHhhCCCCCEEEEEEeeeCC
Confidence 6555 4699999999994332 13347899999999999999987654433
Q ss_pred CCcccCCcccchHHHHHHHHHHHHh-cCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 199 GIPLVNNAAGSFYNTFGSCLVELTK-MGILSKEKMYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~a~~~l~~-eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
... ...+..+-+ +.-|+. .| --+|.+|+++++++.| |++.++..
T Consensus 289 ~~~------~~~~~~~~d-l~ml~~~~g-------~ert~~e~~~ll~~AG-f~~v~v~~ 333 (353)
T 4a6d_A 289 DRR------GPLLTQLYS-LNMLVQTEG-------QERTPTHYHMLLSSAG-FRDFQFKK 333 (353)
T ss_dssp TSC------CCHHHHHHH-HHHHHSSSC-------CCCCHHHHHHHHHHHT-CEEEEEEC
T ss_pred CCC------CCHHHHHHH-HHHHHhCCC-------cCCCHHHHHHHHHHCC-CceEEEEE
Confidence 211 111211111 112222 23 2479999999999995 99887653
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.92 E-value=9.5e-09 Score=87.72 Aligned_cols=129 Identities=14% Similarity=0.187 Sum_probs=93.6
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeecccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~l 120 (329)
++..+|+|+|||+|..+..+.. . ..+++..|.........-+.++. .-+.. +++.+-.
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~--------~---------~~~v~~~D~~~~~~~~a~~~~~~--~~~~~---~d~~~~~ 102 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSK--------Q---------GHDVLGTDLDPILIDYAKQDFPE--ARWVV---GDLSVDQ 102 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHH--------T---------TCEEEEEESCHHHHHHHHHHCTT--SEEEE---CCTTTSC
T ss_pred cCCCeEEEECCCCCHHHHHHHH--------C---------CCcEEEEcCCHHHHHHHHHhCCC--CcEEE---cccccCC
Confidence 3457999999999999888764 1 14799999987666665555432 22333 3554444
Q ss_pred CCCCceeEEEec-cceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCC
Q 037735 121 FPKSSLHFVHSS-YTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDG 199 (329)
Q Consensus 121 fp~~s~dl~~Ss-~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~ 199 (329)
+|++++|+|+++ ..+|+++. .+...+|+..++.|+|||.+++.+.....
T Consensus 103 ~~~~~~D~i~~~~~~~~~~~~-----------------------------~~~~~~l~~~~~~l~~~G~l~~~~~~~~~- 152 (195)
T 3cgg_A 103 ISETDFDLIVSAGNVMGFLAE-----------------------------DGREPALANIHRALGADGRAVIGFGAGRG- 152 (195)
T ss_dssp CCCCCEEEEEECCCCGGGSCH-----------------------------HHHHHHHHHHHHHEEEEEEEEEEEETTSS-
T ss_pred CCCCceeEEEECCcHHhhcCh-----------------------------HHHHHHHHHHHHHhCCCCEEEEEeCCCCC-
Confidence 778999999998 77887531 24568899999999999999998743211
Q ss_pred CcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 200 IPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 200 ~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
.+.+++...++.. +|++.+...
T Consensus 153 -----------------------------------~~~~~~~~~l~~~-Gf~~~~~~~ 174 (195)
T 3cgg_A 153 -----------------------------------WVFGDFLEVAERV-GLELENAFE 174 (195)
T ss_dssp -----------------------------------CCHHHHHHHHHHH-TEEEEEEES
T ss_pred -----------------------------------cCHHHHHHHHHHc-CCEEeeeec
Confidence 4678889998888 499877654
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=98.91 E-value=4.7e-09 Score=96.54 Aligned_cols=138 Identities=15% Similarity=0.238 Sum_probs=95.4
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC--cceeeeccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS--RSYYAAGVPGSFYSS 119 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~--~~~f~~gvpgsFy~~ 119 (329)
+..+|||+|||+|.++..+.. . ..+|+..|+.......+-+.+... +.-|..+ ++..
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~--------~---------g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~---d~~~- 178 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSL--------L---------GYDVTSWDHNENSIAFLNETKEKENLNISTALY---DINA- 178 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHH--------T---------TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEEC---CGGG-
T ss_pred CCCcEEEECCCCCHHHHHHHH--------C---------CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEe---cccc-
Confidence 457999999999999988864 1 258999999877766554433211 2233443 5543
Q ss_pred cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCC
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDG 199 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~ 199 (329)
+.+++++|+|+++.++||++. .++..+|+...+.|+|||.+++........
T Consensus 179 ~~~~~~fD~i~~~~~~~~~~~-----------------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~ 229 (286)
T 3m70_A 179 ANIQENYDFIVSTVVFMFLNR-----------------------------ERVPSIIKNMKEHTNVGGYNLIVAAMSTDD 229 (286)
T ss_dssp CCCCSCEEEEEECSSGGGSCG-----------------------------GGHHHHHHHHHHTEEEEEEEEEEEEBCCSS
T ss_pred ccccCCccEEEEccchhhCCH-----------------------------HHHHHHHHHHHHhcCCCcEEEEEEecCCCC
Confidence 333889999999999999753 256689999999999999988876644332
Q ss_pred CcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 200 IPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 200 ~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
.+.. ... .+..+.+|+.+.++. |++...+.
T Consensus 230 ~~~~-------------------~~~------~~~~~~~~l~~~~~~---~~~~~~~~ 259 (286)
T 3m70_A 230 VPCP-------------------LPF------SFTFAENELKEYYKD---WEFLEYNE 259 (286)
T ss_dssp SCCS-------------------SCC------SCCBCTTHHHHHTTT---SEEEEEEC
T ss_pred CCCC-------------------CCc------cccCCHHHHHHHhcC---CEEEEEEc
Confidence 1110 000 455788999988753 99887763
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.91 E-value=4e-09 Score=91.83 Aligned_cols=111 Identities=18% Similarity=0.207 Sum_probs=80.2
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--CCcceeeecccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--QSRSYYAAGVPGSFYS 118 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~~~~~f~~gvpgsFy~ 118 (329)
.+..+|+|+|||+|..+..++. . +..+++..|....+....-+.+. ..+..+..+ ++.+
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~--------~--------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~---d~~~ 82 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFV--------E--------DGYKTYGIEISDLQLKKAENFSRENNFKLNISKG---DIRK 82 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHH--------H--------TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEEC---CTTS
T ss_pred CCCCEEEEECCCCCHHHHHHHH--------h--------CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEC---chhh
Confidence 3457999999999998766553 1 22589999998777665443321 111223443 4544
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCC
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
-.+|++++|+|+++.++|+++ + .|...+|+..++.|+|||++++..+.+++
T Consensus 83 ~~~~~~~fD~v~~~~~l~~~~--~---------------------------~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 133 (209)
T 2p8j_A 83 LPFKDESMSFVYSYGTIFHMR--K---------------------------NDVKEAIDEIKRVLKPGGLACINFLTTKD 133 (209)
T ss_dssp CCSCTTCEEEEEECSCGGGSC--H---------------------------HHHHHHHHHHHHHEEEEEEEEEEEEETTS
T ss_pred CCCCCCceeEEEEcChHHhCC--H---------------------------HHHHHHHHHHHHHcCCCcEEEEEEecccc
Confidence 447889999999999999863 1 25668899999999999999999998765
Q ss_pred C
Q 037735 199 G 199 (329)
Q Consensus 199 ~ 199 (329)
.
T Consensus 134 ~ 134 (209)
T 2p8j_A 134 E 134 (209)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.8e-09 Score=93.72 Aligned_cols=112 Identities=19% Similarity=0.226 Sum_probs=83.4
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccC
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLF 121 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lf 121 (329)
+..+|+|+|||+|..+..+. .+++..|+.... .-+.. +++.+..+
T Consensus 67 ~~~~vLDiG~G~G~~~~~l~--------------------~~v~~~D~s~~~------------~~~~~---~d~~~~~~ 111 (215)
T 2zfu_A 67 ASLVVADFGCGDCRLASSIR--------------------NPVHCFDLASLD------------PRVTV---CDMAQVPL 111 (215)
T ss_dssp TTSCEEEETCTTCHHHHHCC--------------------SCEEEEESSCSS------------TTEEE---SCTTSCSC
T ss_pred CCCeEEEECCcCCHHHHHhh--------------------ccEEEEeCCCCC------------ceEEE---eccccCCC
Confidence 45789999999999876551 367888887651 11222 34544447
Q ss_pred CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCCc
Q 037735 122 PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIP 201 (329)
Q Consensus 122 p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~ 201 (329)
|++++|+|+++.++|| . |...+|+..++.|+|||+++++.+..
T Consensus 112 ~~~~fD~v~~~~~l~~-~-------------------------------~~~~~l~~~~~~L~~gG~l~i~~~~~----- 154 (215)
T 2zfu_A 112 EDESVDVAVFCLSLMG-T-------------------------------NIRDFLEEANRVLKPGGLLKVAEVSS----- 154 (215)
T ss_dssp CTTCEEEEEEESCCCS-S-------------------------------CHHHHHHHHHHHEEEEEEEEEEECGG-----
T ss_pred CCCCEeEEEEehhccc-c-------------------------------CHHHHHHHHHHhCCCCeEEEEEEcCC-----
Confidence 8899999999999996 2 33578999999999999999986432
Q ss_pred ccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 202 LVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 202 ~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
.+++.+++.++++..| |+++....
T Consensus 155 -------------------------------~~~~~~~~~~~l~~~G-f~~~~~~~ 178 (215)
T 2zfu_A 155 -------------------------------RFEDVRTFLRAVTKLG-FKIVSKDL 178 (215)
T ss_dssp -------------------------------GCSCHHHHHHHHHHTT-EEEEEEEC
T ss_pred -------------------------------CCCCHHHHHHHHHHCC-CEEEEEec
Confidence 1247899999999884 99887653
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.6e-09 Score=98.24 Aligned_cols=146 Identities=18% Similarity=0.129 Sum_probs=90.8
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC----cceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS----RSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~----~~~f~~gvpgsF 116 (329)
.+..+|||+|||||.+|..+.+ + ...+|+..|+..++.....+..+.. ..-+....++++
T Consensus 36 ~~g~~VLDiGcGtG~~t~~la~--------~--------g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~ 99 (232)
T 3opn_A 36 INGKTCLDIGSSTGGFTDVMLQ--------N--------GAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADF 99 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHH--------T--------TCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGC
T ss_pred CCCCEEEEEccCCCHHHHHHHh--------c--------CCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHc
Confidence 3456999999999999988875 1 1138999999988876644433210 000111122344
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
...+++..++|+++++. + .+|+..++.|+|||++++.+ .+
T Consensus 100 ~~~~~d~~~~D~v~~~l--------~-------------------------------~~l~~i~rvLkpgG~lv~~~-~p 139 (232)
T 3opn_A 100 EQGRPSFTSIDVSFISL--------D-------------------------------LILPPLYEILEKNGEVAALI-KP 139 (232)
T ss_dssp CSCCCSEEEECCSSSCG--------G-------------------------------GTHHHHHHHSCTTCEEEEEE-CH
T ss_pred CcCCCCEEEEEEEhhhH--------H-------------------------------HHHHHHHHhccCCCEEEEEE-Cc
Confidence 33345555677665542 2 45999999999999999965 11
Q ss_pred CCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEee
Q 037735 197 PDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMT 259 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~ 259 (329)
. | ...+..+-..|++.....+..+.+++.+.++.. +|++..++...
T Consensus 140 ~-------------~---e~~~~~~~~~G~~~d~~~~~~~~~~l~~~l~~a-Gf~v~~~~~~p 185 (232)
T 3opn_A 140 Q-------------F---EAGREQVGKNGIIRDPKVHQMTIEKVLKTATQL-GFSVKGLTFSP 185 (232)
T ss_dssp H-------------H---HSCHHHHC-CCCCCCHHHHHHHHHHHHHHHHHH-TEEEEEEEECS
T ss_pred c-------------c---ccCHHHhCcCCeecCcchhHHHHHHHHHHHHHC-CCEEEEEEEcc
Confidence 1 1 111233333455433333345889999999988 49999887653
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.1e-08 Score=97.33 Aligned_cols=154 Identities=18% Similarity=0.185 Sum_probs=100.3
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---C-Ccceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---Q-SRSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~-~~~~f~~gvpgsF 116 (329)
.+..+|+|+|||+|..+..+.. + .|..+++..|+ .......-+.+. . .+--|.. +++
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~--------~-------~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~---~d~ 242 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIAR--------R-------APHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVE---GDF 242 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHH--------H-------CTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEE---CCT
T ss_pred ccCcEEEEeCCcCcHHHHHHHH--------h-------CCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEe---CCC
Confidence 3457999999999999988874 2 34578999999 455554433321 1 1223444 467
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc-
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS- 195 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g- 195 (329)
.+ .+|.+ +|+++++..+|.+++ .+...+|+..++.|+|||++++.-+.
T Consensus 243 ~~-~~~~~-~D~v~~~~vl~~~~~-----------------------------~~~~~~l~~~~~~L~pgG~l~i~e~~~ 291 (360)
T 1tw3_A 243 FE-PLPRK-ADAIILSFVLLNWPD-----------------------------HDAVRILTRCAEALEPGGRILIHERDD 291 (360)
T ss_dssp TS-CCSSC-EEEEEEESCGGGSCH-----------------------------HHHHHHHHHHHHTEEEEEEEEEEECCB
T ss_pred CC-CCCCC-ccEEEEcccccCCCH-----------------------------HHHHHHHHHHHHhcCCCcEEEEEEEec
Confidence 65 45654 999999999986432 13357899999999999999998765
Q ss_pred cCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEee
Q 037735 196 VPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMT 259 (329)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~ 259 (329)
.++... ..+..+.+.+ -++..| -..++.+|+.+++++.| |++.++....
T Consensus 292 ~~~~~~-------~~~~~~~~~~-~~~~~~------~~~~t~~e~~~ll~~aG-f~~~~~~~~~ 340 (360)
T 1tw3_A 292 LHENSF-------NEQFTELDLR-MLVFLG------GALRTREKWDGLAASAG-LVVEEVRQLP 340 (360)
T ss_dssp CGGGCC-------SHHHHHHHHH-HHHHHS------CCCCBHHHHHHHHHHTT-EEEEEEEEEE
T ss_pred cCCCCC-------cchhhhccHH-HhhhcC------CcCCCHHHHHHHHHHCC-CeEEEEEeCC
Confidence 322110 0111111111 122223 35589999999999995 9998877654
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.5e-08 Score=96.60 Aligned_cols=153 Identities=11% Similarity=0.096 Sum_probs=101.5
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC----CCcceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP----QSRSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~----~~~~~f~~gvpgsF 116 (329)
.+..+|+|+|||+|..+..+.+ + .|..+++..|+ .......-+.+. ..+--|.. +++
T Consensus 189 ~~~~~vLDvG~G~G~~~~~l~~--------~-------~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~---~d~ 249 (359)
T 1x19_A 189 DGVKKMIDVGGGIGDISAAMLK--------H-------FPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIA---VDI 249 (359)
T ss_dssp TTCCEEEEESCTTCHHHHHHHH--------H-------CTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEE---CCT
T ss_pred CCCCEEEEECCcccHHHHHHHH--------H-------CCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEe---Ccc
Confidence 4567999999999999988875 2 34578999999 556555433321 11223443 577
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
.+..+|+. |+++++..+|.+++ .+...+|+..++.|+|||++++.-+..
T Consensus 250 ~~~~~~~~--D~v~~~~vlh~~~d-----------------------------~~~~~~l~~~~~~L~pgG~l~i~e~~~ 298 (359)
T 1x19_A 250 YKESYPEA--DAVLFCRILYSANE-----------------------------QLSTIMCKKAFDAMRSGGRLLILDMVI 298 (359)
T ss_dssp TTSCCCCC--SEEEEESCGGGSCH-----------------------------HHHHHHHHHHHTTCCTTCEEEEEEECC
T ss_pred ccCCCCCC--CEEEEechhccCCH-----------------------------HHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 66556654 99999999985332 135688999999999999998887765
Q ss_pred CCCCcccCCcccchHHHHHHHHHHHH---hcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 197 PDGIPLVNNAAGSFYNTFGSCLVELT---KMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~l~~a~~~l~---~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
++... ..+..+. .|. ..| .+...+++.+|+.+++++.| |++.+....
T Consensus 299 ~~~~~-------~~~~~~~----~~~~~~~~g---~~~~~~~t~~e~~~ll~~aG-f~~v~~~~~ 348 (359)
T 1x19_A 299 DDPEN-------PNFDYLS----HYILGAGMP---FSVLGFKEQARYKEILESLG-YKDVTMVRK 348 (359)
T ss_dssp CCTTS-------CCHHHHH----HHGGGGGSS---CCCCCCCCGGGHHHHHHHHT-CEEEEEEEE
T ss_pred CCCCC-------chHHHHH----HHHHhcCCC---CcccCCCCHHHHHHHHHHCC-CceEEEEec
Confidence 44211 1122211 221 112 11145589999999999984 998877654
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.4e-09 Score=98.60 Aligned_cols=110 Identities=18% Similarity=0.223 Sum_probs=79.6
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---C----Ccceeeecccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---Q----SRSYYAAGVPG 114 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~----~~~~f~~gvpg 114 (329)
+..+|||+|||+|..+..+.. . ..+|+..|+...+.....+... . .+-.+..+
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~--------~---------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~--- 116 (293)
T 3thr_A 57 GCHRVLDVACGTGVDSIMLVE--------E---------GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEA--- 116 (293)
T ss_dssp TCCEEEETTCTTSHHHHHHHH--------T---------TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEEC---
T ss_pred CCCEEEEecCCCCHHHHHHHH--------C---------CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeec---
Confidence 457999999999999888864 1 1489999998877666544321 0 01123333
Q ss_pred cccccc---CCCCceeEEEec-cceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEE
Q 037735 115 SFYSSL---FPKSSLHFVHSS-YTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAA 190 (329)
Q Consensus 115 sFy~~l---fp~~s~dl~~Ss-~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~ 190 (329)
++.... ++++++|+|+++ .++|++.+.... ..++..+|+..++.|+|||+|+
T Consensus 117 d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~------------------------~~~~~~~l~~~~~~LkpgG~l~ 172 (293)
T 3thr_A 117 NWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGD------------------------QSEHRLALKNIASMVRPGGLLV 172 (293)
T ss_dssp CGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSS------------------------SHHHHHHHHHHHHTEEEEEEEE
T ss_pred ChhhCccccccCCCeEEEEEcChHHhhcCccccC------------------------HHHHHHHHHHHHHHcCCCeEEE
Confidence 454433 789999999999 899998763311 1356789999999999999999
Q ss_pred EEecc
Q 037735 191 LVMFS 195 (329)
Q Consensus 191 ~~~~g 195 (329)
++...
T Consensus 173 ~~~~~ 177 (293)
T 3thr_A 173 IDHRN 177 (293)
T ss_dssp EEEEC
T ss_pred EEeCC
Confidence 99864
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=98.88 E-value=3.8e-09 Score=94.04 Aligned_cols=104 Identities=20% Similarity=0.279 Sum_probs=74.7
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--CCcceeeecccccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--QSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~~~~~f~~gvpgsFy~~l 120 (329)
..+|+|+|||+|..+..+.+ . .+++..|+..++....-+.+. ....-+..+ ++.+-.
T Consensus 34 ~~~vLdiG~G~G~~~~~l~~----------------~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~---d~~~~~ 92 (243)
T 3d2l_A 34 GKRIADIGCGTGTATLLLAD----------------H--YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQ---DMRELE 92 (243)
T ss_dssp TCEEEEESCTTCHHHHHHTT----------------T--SEEEEEESCHHHHHHHHHHHHHTTCCCEEEEC---CGGGCC
T ss_pred CCeEEEecCCCCHHHHHHhh----------------C--CeEEEEECCHHHHHHHHHhhhhcCCceEEEEc---ChhhcC
Confidence 47999999999998887753 1 479999998777665544332 112233443 454333
Q ss_pred CCCCceeEEEecc-ceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 121 FPKSSLHFVHSSY-TLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 121 fp~~s~dl~~Ss~-alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
++ +++|+|+++. ++||+... .|...+|+..++.|+|||.+++.+..+
T Consensus 93 ~~-~~fD~v~~~~~~~~~~~~~----------------------------~~~~~~l~~~~~~L~pgG~l~~~~~~~ 140 (243)
T 3d2l_A 93 LP-EPVDAITILCDSLNYLQTE----------------------------ADVKQTFDSAARLLTDGGKLLFDVHSP 140 (243)
T ss_dssp CS-SCEEEEEECTTGGGGCCSH----------------------------HHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred CC-CCcCEEEEeCCchhhcCCH----------------------------HHHHHHHHHHHHhcCCCeEEEEEcCCH
Confidence 44 8999999987 99997432 256688999999999999999987654
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.87 E-value=7.4e-09 Score=97.34 Aligned_cols=145 Identities=17% Similarity=0.137 Sum_probs=92.8
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeecccccc--c-
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSF--Y- 117 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsF--y- 117 (329)
.+..+|||+|||||.+|..+++ .+..+|+.-|+..++.....+.-+. ...... .++ .
T Consensus 84 ~~g~~vLDiGcGTG~~t~~L~~----------------~ga~~V~aVDvs~~mL~~a~r~~~r--v~~~~~--~ni~~l~ 143 (291)
T 3hp7_A 84 VEDMITIDIGASTGGFTDVMLQ----------------NGAKLVYAVDVGTNQLVWKLRQDDR--VRSMEQ--YNFRYAE 143 (291)
T ss_dssp CTTCEEEEETCTTSHHHHHHHH----------------TTCSEEEEECSSSSCSCHHHHTCTT--EEEECS--CCGGGCC
T ss_pred ccccEEEecCCCccHHHHHHHh----------------CCCCEEEEEECCHHHHHHHHHhCcc--cceecc--cCceecc
Confidence 3456999999999999988875 1224899999999887663332221 111000 011 0
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
..-+|..++|++++..++||+. .+|..-++.|+|||.|++.. .+.
T Consensus 144 ~~~l~~~~fD~v~~d~sf~sl~----------------------------------~vL~e~~rvLkpGG~lv~lv-kPq 188 (291)
T 3hp7_A 144 PVDFTEGLPSFASIDVSFISLN----------------------------------LILPALAKILVDGGQVVALV-KPQ 188 (291)
T ss_dssp GGGCTTCCCSEEEECCSSSCGG----------------------------------GTHHHHHHHSCTTCEEEEEE-CGG
T ss_pred hhhCCCCCCCEEEEEeeHhhHH----------------------------------HHHHHHHHHcCcCCEEEEEE-Ccc
Confidence 1124666799999999999873 33899999999999999973 211
Q ss_pred CCCcccCCcccchHHHHHHHHHHHH-hcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 198 DGIPLVNNAAGSFYNTFGSCLVELT-KMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~a~~~l~-~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
-. .. ++-+ ..|.+.....+..+.+++.+.++.. +|.+..+...
T Consensus 189 fe--~~---------------~~~~~~~G~vrd~~~~~~~~~~v~~~~~~~-Gf~v~~~~~s 232 (291)
T 3hp7_A 189 FE--AG---------------REQIGKNGIVRESSIHEKVLETVTAFAVDY-GFSVKGLDFS 232 (291)
T ss_dssp GT--SC---------------GGGCC-CCCCCCHHHHHHHHHHHHHHHHHT-TEEEEEEEEC
T ss_pred cc--cC---------------hhhcCCCCccCCHHHHHHHHHHHHHHHHHC-CCEEEEEEEC
Confidence 10 00 0001 1244332224445789999999988 5999887765
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.6e-09 Score=95.70 Aligned_cols=141 Identities=12% Similarity=0.051 Sum_probs=87.7
Q ss_pred HHHHHHHHHhHhhHHHHHh----hcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCC
Q 037735 15 AYQSIQVYILRYDPRTAVT----DLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHS 90 (329)
Q Consensus 15 ~~Q~~~~~~~~~~l~~ai~----~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp 90 (329)
..|++..+++.|.+.-... ++...+....-+|+|+|||+|..+..+.. . .|+..|+..|+.
T Consensus 3 ~~q~~~~~~~~~~~~~~~~~~~~d~~~~f~~~~~~vLDiGcG~G~~~~~lA~--------~-------~p~~~v~giD~s 67 (218)
T 3dxy_A 3 SGQEHALENYWPVMGVEFSEDMLDFPALFGREAPVTLEIGFGMGASLVAMAK--------D-------RPEQDFLGIEVH 67 (218)
T ss_dssp ----CHHHHHHHHHBCCCCSSCCCHHHHHSSCCCEEEEESCTTCHHHHHHHH--------H-------CTTSEEEEECSC
T ss_pred HHHHHHHHHHhHHhCCCCCCCCCCHHHHcCCCCCeEEEEeeeChHHHHHHHH--------H-------CCCCeEEEEEec
Confidence 4577788877776541100 00000123456899999999999988864 2 455789999999
Q ss_pred cchHHhhhhcCC---CCcceeeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHH
Q 037735 91 DNDFNTLFKSLP---QSRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQ 167 (329)
Q Consensus 91 ~ndfn~lf~~l~---~~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q 167 (329)
.+....+-+... ...-.|+.+....+....+|++++|.+++++...|...... +.++
T Consensus 68 ~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~~~p~~~~~~~----~rr~---------------- 127 (218)
T 3dxy_A 68 SPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFFPDPWHKARHN----KRRI---------------- 127 (218)
T ss_dssp HHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEESCCCCCSGGGG----GGSS----------------
T ss_pred HHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeCCCCccchhhh----hhhh----------------
Confidence 887776554431 11223555432233334589999999999998888432110 0000
Q ss_pred HhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 168 FNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 168 ~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
.-..||+..++.|+|||.|++.+
T Consensus 128 ---~~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 128 ---VQVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp ---CSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ---hhHHHHHHHHHHcCCCcEEEEEe
Confidence 00258999999999999999987
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=98.86 E-value=8.9e-09 Score=93.82 Aligned_cols=107 Identities=10% Similarity=0.021 Sum_probs=81.6
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCc-ceeeecccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSR-SYYAAGVPGSFYSSL 120 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~-~~f~~gvpgsFy~~l 120 (329)
+-.+|+|+|||+|..|..+.+.+ -|+-.|+.-|....+...+-+...... ...+.+..++...-.
T Consensus 77 pG~~VldlG~G~G~~~~~la~~V--------------G~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~ 142 (233)
T 4df3_A 77 EGDRILYLGIASGTTASHMSDII--------------GPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYR 142 (233)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHH--------------CTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGT
T ss_pred CCCEEEEecCcCCHHHHHHHHHh--------------CCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccc
Confidence 45799999999999999997644 456789999999888777665554332 346677777765556
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
++.+++|++++..+.+| |-..++....+-|+|||+++++.-.
T Consensus 143 ~~~~~vDvVf~d~~~~~---------------------------------~~~~~l~~~~r~LKpGG~lvI~ik~ 184 (233)
T 4df3_A 143 HLVEGVDGLYADVAQPE---------------------------------QAAIVVRNARFFLRDGGYMLMAIKA 184 (233)
T ss_dssp TTCCCEEEEEECCCCTT---------------------------------HHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cccceEEEEEEeccCCh---------------------------------hHHHHHHHHHHhccCCCEEEEEEec
Confidence 78899999997666555 2236789999999999999998743
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=98.85 E-value=4.5e-08 Score=83.77 Aligned_cols=126 Identities=13% Similarity=0.102 Sum_probs=87.7
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccCC
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLFP 122 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lfp 122 (329)
..+|+|+|||+|..+..+.+ .- +|+..|+...+... .+ +--|..| ++.+ .++
T Consensus 24 ~~~vLD~GcG~G~~~~~l~~----------------~~--~v~gvD~s~~~~~~-----~~-~~~~~~~---d~~~-~~~ 75 (170)
T 3q87_B 24 MKIVLDLGTSTGVITEQLRK----------------RN--TVVSTDLNIRALES-----HR-GGNLVRA---DLLC-SIN 75 (170)
T ss_dssp SCEEEEETCTTCHHHHHHTT----------------TS--EEEEEESCHHHHHT-----CS-SSCEEEC---STTT-TBC
T ss_pred CCeEEEeccCccHHHHHHHh----------------cC--cEEEEECCHHHHhc-----cc-CCeEEEC---Chhh-hcc
Confidence 45999999999999988863 11 79999998776554 11 2234443 5644 667
Q ss_pred CCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCCcc
Q 037735 123 KSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPL 202 (329)
Q Consensus 123 ~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~ 202 (329)
++++|+++|+..+||.++.+.. .. ..|...+++...+.| |||++++...+.
T Consensus 76 ~~~fD~i~~n~~~~~~~~~~~~--~~--------------------~~~~~~~~~~~~~~l-pgG~l~~~~~~~------ 126 (170)
T 3q87_B 76 QESVDVVVFNPPYVPDTDDPII--GG--------------------GYLGREVIDRFVDAV-TVGMLYLLVIEA------ 126 (170)
T ss_dssp GGGCSEEEECCCCBTTCCCTTT--BC--------------------CGGGCHHHHHHHHHC-CSSEEEEEEEGG------
T ss_pred cCCCCEEEECCCCccCCccccc--cC--------------------CcchHHHHHHHHhhC-CCCEEEEEEecC------
Confidence 7999999999999997765311 00 012235677777778 999999987443
Q ss_pred cCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 203 VNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 203 ~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
.+.+++.+.+++.| |++..+...
T Consensus 127 --------------------------------~~~~~l~~~l~~~g-f~~~~~~~~ 149 (170)
T 3q87_B 127 --------------------------------NRPKEVLARLEERG-YGTRILKVR 149 (170)
T ss_dssp --------------------------------GCHHHHHHHHHHTT-CEEEEEEEE
T ss_pred --------------------------------CCHHHHHHHHHHCC-CcEEEEEee
Confidence 23677788888874 888776654
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=98.84 E-value=5.9e-09 Score=94.79 Aligned_cols=154 Identities=16% Similarity=0.224 Sum_probs=99.2
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccC
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLF 121 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lf 121 (329)
+..+|+|+|||+|.++..+.. . ..+++..|+...+....-+.... . +..+ ++....+
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~--------~---------~~~v~gvD~s~~~l~~a~~~~~~--~-~~~~---d~~~~~~ 110 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQE--------R---------GFEVVLVDPSKEMLEVAREKGVK--N-VVEA---KAEDLPF 110 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHT--------T---------TCEEEEEESCHHHHHHHHHHTCS--C-EEEC---CTTSCCS
T ss_pred CCCeEEEeCCCcCHHHHHHHH--------c---------CCeEEEEeCCHHHHHHHHhhcCC--C-EEEC---cHHHCCC
Confidence 567999999999999988763 1 14799999988776665554432 2 4444 5544457
Q ss_pred CCCceeEEEecc-ceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCC
Q 037735 122 PKSSLHFVHSSY-TLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGI 200 (329)
Q Consensus 122 p~~s~dl~~Ss~-alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~ 200 (329)
|++++|+|+++. .+||..+ ...+|+..++.|+|||++++.++++....
T Consensus 111 ~~~~fD~v~~~~~~~~~~~~-------------------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~ 159 (260)
T 2avn_A 111 PSGAFEAVLALGDVLSYVEN-------------------------------KDKAFSEIRRVLVPDGLLIATVDNFYTFL 159 (260)
T ss_dssp CTTCEEEEEECSSHHHHCSC-------------------------------HHHHHHHHHHHEEEEEEEEEEEEBHHHHH
T ss_pred CCCCEEEEEEcchhhhcccc-------------------------------HHHHHHHHHHHcCCCeEEEEEeCChHHHH
Confidence 889999999976 5677543 34789999999999999999998753200
Q ss_pred cccCCcccchHHHHHHHHHHHHhcCCcCCCc------ccCCCHHHHHHHHHhCCceEEeEEEEee
Q 037735 201 PLVNNAAGSFYNTFGSCLVELTKMGILSKEK------MYNPTPKELEGIIQRNGNFTIERMEKMT 259 (329)
Q Consensus 201 ~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~------~y~ps~eE~~~~i~~~g~f~i~~~e~~~ 259 (329)
. .......|+.+ ..+...|...... .++.+++|+.++ . +|+++++....
T Consensus 160 ~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l---a-Gf~~~~~~~~~ 214 (260)
T 2avn_A 160 Q--QMIEKDAWDQI----TRFLKTQTTSVGTTLFSFNSYAFKPEDLDSL---E-GFETVDIRGIG 214 (260)
T ss_dssp H--HHHHTTCHHHH----HHHHHHCEEEEECSSEEEEEECBCGGGGSSC---T-TEEEEEEEEEC
T ss_pred H--HhhcchhHHHH----HHHHhccccccCCCceeEEEeccCHHHHHHh---c-CceEEEEECCC
Confidence 0 00000012111 2223334322111 236788898877 4 69998887653
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=98.81 E-value=5.1e-09 Score=96.96 Aligned_cols=101 Identities=14% Similarity=0.045 Sum_probs=74.5
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeecccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~l 120 (329)
.+..+|||+|||+|.+|..+.+ + ..+|+..|+..++...+-+.+... + +.+++..-.
T Consensus 44 ~~g~~VLDlGcGtG~~a~~La~--------~---------g~~V~gvD~S~~ml~~Ar~~~~~~---~---v~~~~~~~~ 100 (261)
T 3iv6_A 44 VPGSTVAVIGASTRFLIEKALE--------R---------GASVTVFDFSQRMCDDLAEALADR---C---VTIDLLDIT 100 (261)
T ss_dssp CTTCEEEEECTTCHHHHHHHHH--------T---------TCEEEEEESCHHHHHHHHHHTSSS---C---CEEEECCTT
T ss_pred CCcCEEEEEeCcchHHHHHHHh--------c---------CCEEEEEECCHHHHHHHHHHHHhc---c---ceeeeeecc
Confidence 3457999999999999998874 1 147999999998887776665432 1 222342211
Q ss_pred C-----CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 121 F-----PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 121 f-----p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
. +++++|+|+|+.++||+.. .|+..+|+..++.| |||+|++++.
T Consensus 101 ~~~~~~~~~~fD~Vv~~~~l~~~~~-----------------------------~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 101 AEIPKELAGHFDFVLNDRLINRFTT-----------------------------EEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp SCCCGGGTTCCSEEEEESCGGGSCH-----------------------------HHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred cccccccCCCccEEEEhhhhHhCCH-----------------------------HHHHHHHHHHHHhC-cCcEEEEEec
Confidence 1 2679999999999998631 25567888999999 9999999975
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.80 E-value=4e-08 Score=86.57 Aligned_cols=144 Identities=12% Similarity=0.023 Sum_probs=89.4
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC------CC-Ccceeeeccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL------PQ-SRSYYAAGVP 113 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l------~~-~~~~f~~gvp 113 (329)
.+..+|+|+|||+|.++..+.. . .|..+|+..|+...+...+.+.. .. .+-.|..+
T Consensus 26 ~~~~~vLDiGcG~G~~~~~la~--------~-------~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~-- 88 (218)
T 3mq2_A 26 QYDDVVLDVGTGDGKHPYKVAR--------Q-------NPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWA-- 88 (218)
T ss_dssp TSSEEEEEESCTTCHHHHHHHH--------H-------CTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEEC--
T ss_pred cCCCEEEEecCCCCHHHHHHHH--------H-------CCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEec--
Confidence 4568999999999999998875 2 34478999999988777542111 11 12235554
Q ss_pred cccccccCCCCceeEEE---ecccee--cccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCce
Q 037735 114 GSFYSSLFPKSSLHFVH---SSYTLH--WLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGL 188 (329)
Q Consensus 114 gsFy~~lfp~~s~dl~~---Ss~alh--WLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~ 188 (329)
++.+-.+++++ |.++ +...+| |+.+. ..+|+..++.|+|||+
T Consensus 89 -d~~~l~~~~~~-d~v~~~~~~~~~~~~~~~~~-------------------------------~~~l~~~~~~LkpgG~ 135 (218)
T 3mq2_A 89 -TAERLPPLSGV-GELHVLMPWGSLLRGVLGSS-------------------------------PEMLRGMAAVCRPGAS 135 (218)
T ss_dssp -CSTTCCSCCCE-EEEEEESCCHHHHHHHHTSS-------------------------------SHHHHHHHHTEEEEEE
T ss_pred -chhhCCCCCCC-CEEEEEccchhhhhhhhccH-------------------------------HHHHHHHHHHcCCCcE
Confidence 56554467776 7766 222221 33332 3789999999999999
Q ss_pred EEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCC----HHHHHHHHHhCCceEEeEEEEee
Q 037735 189 AALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPT----PKELEGIIQRNGNFTIERMEKMT 259 (329)
Q Consensus 189 l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps----~eE~~~~i~~~g~f~i~~~e~~~ 259 (329)
+++++....-..... ++ .+ ...++ .+++...++.. +|++..++.+.
T Consensus 136 l~~~~~~~~~~~~~~----------------~~--~~------~~~~~~~~~~~~l~~~l~~a-Gf~i~~~~~~~ 185 (218)
T 3mq2_A 136 FLVALNLHAWRPSVP----------------EV--GE------HPEPTPDSADEWLAPRYAEA-GWKLADCRYLE 185 (218)
T ss_dssp EEEEEEGGGBTTBCG----------------GG--TT------CCCCCHHHHHHHHHHHHHHT-TEEEEEEEEEC
T ss_pred EEEEecccccccccc----------------cc--cc------CCccchHHHHHHHHHHHHHc-CCCceeeeccc
Confidence 999664322111110 00 01 11122 34577788888 59999988763
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.76 E-value=8.2e-09 Score=96.05 Aligned_cols=110 Identities=14% Similarity=0.195 Sum_probs=75.0
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC------------------
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ------------------ 103 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~------------------ 103 (329)
...+|||+|||+|..|..+.. ++ +..+|+..|+...+....-+.+..
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~--------~~-------~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~ 110 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIAC--------KW-------GPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPG 110 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHH--------HT-------CCSEEEEEESCHHHHHHHHHTC--------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHH--------Hc-------CCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccc
Confidence 457999999999999998875 21 235888999876665554433211
Q ss_pred -------------------------------------------Ccceeeecccccccccc-----CCCCceeEEEeccce
Q 037735 104 -------------------------------------------SRSYYAAGVPGSFYSSL-----FPKSSLHFVHSSYTL 135 (329)
Q Consensus 104 -------------------------------------------~~~~f~~gvpgsFy~~l-----fp~~s~dl~~Ss~al 135 (329)
....|.. +++.... ++++++|+|+|..++
T Consensus 111 ~~~~~~~~~~~~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~---~d~~~~~~~~~~~~~~~fD~I~~~~vl 187 (292)
T 3g07_A 111 AEGEEGTTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVT---GNYVLDRDDLVEAQTPEYDVVLCLSLT 187 (292)
T ss_dssp -------------------------------CCSSTTCCSSTTTTEEEEE---CCCCCSSHHHHTTCCCCEEEEEEESCH
T ss_pred cccccccccccccccccchhhhccCccccccccccccccccccccceEEe---cccccCccccccccCCCcCEEEEChHH
Confidence 0112333 2443222 478999999999999
Q ss_pred ecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 136 HWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 136 hWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
+|+.-. .-..++.++|+..++.|+|||+|++...
T Consensus 188 ~~ihl~-------------------------~~~~~~~~~l~~~~~~LkpGG~lil~~~ 221 (292)
T 3g07_A 188 KWVHLN-------------------------WGDEGLKRMFRRIYRHLRPGGILVLEPQ 221 (292)
T ss_dssp HHHHHH-------------------------HHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred HHhhhc-------------------------CCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 996300 0123567899999999999999999653
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=2.3e-08 Score=95.49 Aligned_cols=151 Identities=17% Similarity=0.142 Sum_probs=96.2
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccC
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLF 121 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lf 121 (329)
+..+|+|+|||+|..+..+.+ + .|..+++.-|+| ..... .+.++ .--| +.++|++ .+
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~--------~-------~p~~~~~~~D~~-~~~~~-a~~~~--~v~~---~~~d~~~-~~ 249 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHE--------I-------FPHLKCTVFDQP-QVVGN-LTGNE--NLNF---VGGDMFK-SI 249 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHH--------H-------CTTSEEEEEECH-HHHSS-CCCCS--SEEE---EECCTTT-CC
T ss_pred CCCEEEEECCCcCHHHHHHHH--------H-------CCCCeEEEeccH-HHHhh-cccCC--CcEE---EeCccCC-CC
Confidence 347999999999999998875 3 345678888995 34322 22221 1123 3467877 56
Q ss_pred CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhcc---CceEEEEecccCC
Q 037735 122 PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVP---GGLAALVMFSVPD 198 (329)
Q Consensus 122 p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~p---GG~l~~~~~g~~~ 198 (329)
| ++|+++++..||++++. +...+|+..++.|+| ||++++.-+..++
T Consensus 250 ~--~~D~v~~~~vlh~~~d~-----------------------------~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~ 298 (358)
T 1zg3_A 250 P--SADAVLLKWVLHDWNDE-----------------------------QSLKILKNSKEAISHKGKDGKVIIIDISIDE 298 (358)
T ss_dssp C--CCSEEEEESCGGGSCHH-----------------------------HHHHHHHHHHHHTGGGGGGCEEEEEECEECT
T ss_pred C--CceEEEEcccccCCCHH-----------------------------HHHHHHHHHHHhCCCCCCCcEEEEEEeccCC
Confidence 6 49999999999985431 234889999999999 9999998765443
Q ss_pred CCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 199 GIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
...... . .....+.+. .-|+..| -..++.+|+.+++++.| |++.++..
T Consensus 299 ~~~~~~--~-~~~~~~~d~-~~~~~~~------g~~~t~~e~~~ll~~aG-f~~~~~~~ 346 (358)
T 1zg3_A 299 TSDDRG--L-TELQLDYDL-VMLTMFL------GKERTKQEWEKLIYDAG-FSSYKITP 346 (358)
T ss_dssp TCSCHH--H-HHHHHHHHH-HHHHHHS------CCCEEHHHHHHHHHHTT-CCEEEEEE
T ss_pred CCccch--h-hhHHHhhCH-HHhccCC------CCCCCHHHHHHHHHHcC-CCeeEEEe
Confidence 211000 0 001111111 1111122 23479999999999995 99887765
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.75 E-value=5.7e-08 Score=84.43 Aligned_cols=122 Identities=17% Similarity=0.132 Sum_probs=83.1
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC-cceeeeccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS-RSYYAAGVPGSFYSS 119 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~-~~~f~~gvpgsFy~~ 119 (329)
.+..+|+|+|||+|..+..+.. . .+. +++..|+........-+..... +..+..+ ++.+-
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~--------~-------~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~---d~~~~ 101 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFL--------G-------GFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETM---DVRKL 101 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHH--------T-------TCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEEC---CTTSC
T ss_pred CCCCeEEEECCCCcHHHHHHHH--------c-------CCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEc---chhcC
Confidence 3457899999999999988864 1 122 7999999877766655544321 2234443 45443
Q ss_pred cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
.++++++|+|+++.++|.+.......|.. .+ ....|...+|+...+.|+|||++++..++.+
T Consensus 102 ~~~~~~fD~v~~~~~~~~~~~~~~~~~~~--------~~--------~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~ 163 (215)
T 2pxx_A 102 DFPSASFDVVLEKGTLDALLAGERDPWTV--------SS--------EGVHTVDQVLSEVSRVLVPGGRFISMTSAAP 163 (215)
T ss_dssp CSCSSCEEEEEEESHHHHHTTTCSCTTSC--------CH--------HHHHHHHHHHHHHHHHEEEEEEEEEEESCCH
T ss_pred CCCCCcccEEEECcchhhhcccccccccc--------cc--------chhHHHHHHHHHHHHhCcCCCEEEEEeCCCc
Confidence 57889999999999998765322111221 00 1124667899999999999999999998764
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.75 E-value=8.6e-09 Score=90.74 Aligned_cols=106 Identities=13% Similarity=0.195 Sum_probs=74.5
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--CCcceeeeccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--QSRSYYAAGVPGSFYSS 119 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~~~~~f~~gvpgsFy~~ 119 (329)
...+|+|+|||+|..+..+.. . .+ +++..|+........-+... ..+--+..+ ++.+.
T Consensus 38 ~~~~vLDlG~G~G~~~~~l~~--------~-------~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~---d~~~~ 97 (227)
T 1ve3_A 38 KRGKVLDLACGVGGFSFLLED--------Y-------GF--EVVGVDISEDMIRKAREYAKSRESNVEFIVG---DARKL 97 (227)
T ss_dssp SCCEEEEETCTTSHHHHHHHH--------T-------TC--EEEEEESCHHHHHHHHHHHHHTTCCCEEEEC---CTTSC
T ss_pred CCCeEEEEeccCCHHHHHHHH--------c-------CC--EEEEEECCHHHHHHHHHHHHhcCCCceEEEC---chhcC
Confidence 367999999999998877754 1 22 79999998766555433321 112234443 56444
Q ss_pred cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
.+|++++|+|+++.++|+.. . .|...+|+..++.|+|||++++..+..
T Consensus 98 ~~~~~~~D~v~~~~~~~~~~-~----------------------------~~~~~~l~~~~~~L~~gG~l~~~~~~~ 145 (227)
T 1ve3_A 98 SFEDKTFDYVIFIDSIVHFE-P----------------------------LELNQVFKEVRRVLKPSGKFIMYFTDL 145 (227)
T ss_dssp CSCTTCEEEEEEESCGGGCC-H----------------------------HHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred CCCCCcEEEEEEcCchHhCC-H----------------------------HHHHHHHHHHHHHcCCCcEEEEEecCh
Confidence 47888999999999955422 1 245688999999999999999998753
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.8e-08 Score=86.75 Aligned_cols=122 Identities=14% Similarity=0.135 Sum_probs=84.8
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|..+..+.+ .+..+++..|+........-+.+. ...--+..+ ++..
T Consensus 60 ~~~~vLDiG~G~G~~~~~l~~----------------~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~---d~~~ 120 (205)
T 3grz_A 60 KPLTVADVGTGSGILAIAAHK----------------LGAKSVLATDISDESMTAAEENAALNGIYDIALQKT---SLLA 120 (205)
T ss_dssp SCCEEEEETCTTSHHHHHHHH----------------TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEES---STTT
T ss_pred CCCEEEEECCCCCHHHHHHHH----------------CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEec---cccc
Confidence 457999999999998887653 122489999998766555443322 111223333 4433
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCC
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
++++++|+|+++..+||+ ..+|+...+.|+|||.++++.+...
T Consensus 121 --~~~~~fD~i~~~~~~~~~----------------------------------~~~l~~~~~~L~~gG~l~~~~~~~~- 163 (205)
T 3grz_A 121 --DVDGKFDLIVANILAEIL----------------------------------LDLIPQLDSHLNEDGQVIFSGIDYL- 163 (205)
T ss_dssp --TCCSCEEEEEEESCHHHH----------------------------------HHHGGGSGGGEEEEEEEEEEEEEGG-
T ss_pred --cCCCCceEEEECCcHHHH----------------------------------HHHHHHHHHhcCCCCEEEEEecCcc-
Confidence 456899999999877764 2668888899999999999765433
Q ss_pred CCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 199 GIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
+.+++...+++.| |++.....
T Consensus 164 -------------------------------------~~~~~~~~~~~~G-f~~~~~~~ 184 (205)
T 3grz_A 164 -------------------------------------QLPKIEQALAENS-FQIDLKMR 184 (205)
T ss_dssp -------------------------------------GHHHHHHHHHHTT-EEEEEEEE
T ss_pred -------------------------------------cHHHHHHHHHHcC-CceEEeec
Confidence 3567778888774 88877654
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=7.6e-08 Score=91.62 Aligned_cols=150 Identities=15% Similarity=0.213 Sum_probs=96.0
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccC
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLF 121 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lf 121 (329)
+..+|+|+|||+|..+..+.+ + .|..+++.-|+ ...... .+..+ .--| +.++|++ -+
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~--------~-------~p~~~~~~~D~-~~~~~~-a~~~~--~v~~---~~~d~~~-~~ 244 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICE--------T-------FPKLKCIVFDR-PQVVEN-LSGSN--NLTY---VGGDMFT-SI 244 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHH--------H-------CTTCEEEEEEC-HHHHTT-CCCBT--TEEE---EECCTTT-CC
T ss_pred cCceEEEeCCCccHHHHHHHH--------H-------CCCCeEEEeeC-HHHHhh-cccCC--CcEE---EeccccC-CC
Confidence 457999999999999888875 3 34578999999 444332 22222 1223 3457876 55
Q ss_pred CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhcc---CceEEEEecccCC
Q 037735 122 PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVP---GGLAALVMFSVPD 198 (329)
Q Consensus 122 p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~p---GG~l~~~~~g~~~ 198 (329)
|+ +|+++++.++|.+++. +...+|+..++.|+| ||++++.-+..++
T Consensus 245 p~--~D~v~~~~~lh~~~d~-----------------------------~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~ 293 (352)
T 1fp2_A 245 PN--ADAVLLKYILHNWTDK-----------------------------DCLRILKKCKEAVTNDGKRGKVTIIDMVIDK 293 (352)
T ss_dssp CC--CSEEEEESCGGGSCHH-----------------------------HHHHHHHHHHHHHSGGGCCCEEEEEECEECT
T ss_pred CC--ccEEEeehhhccCCHH-----------------------------HHHHHHHHHHHhCCCCCCCcEEEEEEeecCC
Confidence 63 9999999999954321 234789999999999 9999998776543
Q ss_pred CCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 199 GIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
.... ..+... ..+.++.... .. -..++.+|+.+++++.| |++.++..
T Consensus 294 ~~~~------~~~~~~-~~~~d~~~~~-~~---g~~~t~~e~~~ll~~aG-f~~~~~~~ 340 (352)
T 1fp2_A 294 KKDE------NQVTQI-KLLMDVNMAC-LN---GKERNEEEWKKLFIEAG-FQHYKISP 340 (352)
T ss_dssp TTSC------HHHHHH-HHHHHHHGGG-GT---CCCEEHHHHHHHHHHTT-CCEEEEEE
T ss_pred CCCc------cchhhh-HhhccHHHHh-cc---CCCCCHHHHHHHHHHCC-CCeeEEEe
Confidence 2210 000011 1122221100 00 13368999999999995 98877654
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2.1e-08 Score=89.75 Aligned_cols=109 Identities=16% Similarity=0.199 Sum_probs=75.5
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--Ccceeeecccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--SRSYYAAGVPGSFYS 118 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--~~~~f~~gvpgsFy~ 118 (329)
.+..+|||+|||+|.++..+.. . .+ .+|+..|+..++....-+.... .+--+..| ++.+
T Consensus 59 ~~~~~vLDiGcGtG~~~~~l~~--------~-------~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~---d~~~ 119 (236)
T 1zx0_A 59 SKGGRVLEVGFGMAIAASKVQE--------A-------PI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKG---LWED 119 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHHT--------S-------CE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEES---CHHH
T ss_pred CCCCeEEEEeccCCHHHHHHHh--------c-------CC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEec---CHHH
Confidence 3457999999999999888742 1 22 3799999998877665444321 12234443 5544
Q ss_pred c--cCCCCceeEEEe-ccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 119 S--LFPKSSLHFVHS-SYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 119 ~--lfp~~s~dl~~S-s~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
. .+|++++|+|++ .+++ ...... ..++..+|+..++.|+|||+|++..+.
T Consensus 120 ~~~~~~~~~fD~V~~d~~~~-~~~~~~--------------------------~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 120 VAPTLPDGHFDGILYDTYPL-SEETWH--------------------------THQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp HGGGSCTTCEEEEEECCCCC-BGGGTT--------------------------THHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred hhcccCCCceEEEEECCccc-chhhhh--------------------------hhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 4 578899999999 7766 222222 125567899999999999999987544
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=98.71 E-value=3.4e-08 Score=89.86 Aligned_cols=132 Identities=11% Similarity=0.026 Sum_probs=80.7
Q ss_pred chHHHhHHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecC
Q 037735 9 SYASNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFND 88 (329)
Q Consensus 9 sY~~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nD 88 (329)
.|+.....|.+.+..++..|+ .+. ..+..+|||+|||+|..|..+.+.+ .|.-+|+..|
T Consensus 50 ~yr~w~~~~skla~~ll~~l~----~~~---l~~g~~VLDlG~GtG~~t~~la~~v--------------~~~G~V~avD 108 (232)
T 3id6_C 50 EYREWNAFRSKLAGAILKGLK----TNP---IRKGTKVLYLGAASGTTISHVSDII--------------ELNGKAYGVE 108 (232)
T ss_dssp EEEECCTTTCHHHHHHHTTCS----CCS---CCTTCEEEEETCTTSHHHHHHHHHH--------------TTTSEEEEEE
T ss_pred chhhhchHHHHHHHHHHhhhh----hcC---CCCCCEEEEEeecCCHHHHHHHHHh--------------CCCCEEEEEE
Confidence 377777788888877665553 111 2335899999999999998887533 3446899999
Q ss_pred CCcchHHhhhhcCC-CCcceeeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHH
Q 037735 89 HSDNDFNTLFKSLP-QSRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQ 167 (329)
Q Consensus 89 Lp~ndfn~lf~~l~-~~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q 167 (329)
+...+...+.+... ...-.++.+............+++|+++|..+. |
T Consensus 109 ~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~a~------~------------------------- 157 (232)
T 3id6_C 109 FSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQ------P------------------------- 157 (232)
T ss_dssp CCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEECCCC------T-------------------------
T ss_pred CcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEecCCC------h-------------------------
Confidence 98876433322110 112234554322211111224689999998764 2
Q ss_pred HhhcHHHHHH-HHHHHhccCceEEEEecc
Q 037735 168 FNNDFQTFLN-TRAQELVPGGLAALVMFS 195 (329)
Q Consensus 168 ~~~D~~~FL~-~ra~eL~pGG~l~~~~~g 195 (329)
|-...|. ...+-|+|||+|++++-.
T Consensus 158 ---~~~~il~~~~~~~LkpGG~lvisik~ 183 (232)
T 3id6_C 158 ---DQTDIAIYNAKFFLKVNGDMLLVIKA 183 (232)
T ss_dssp ---THHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred ---hHHHHHHHHHHHhCCCCeEEEEEEcc
Confidence 1123343 444489999999999643
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=98.70 E-value=3.1e-08 Score=83.84 Aligned_cols=102 Identities=12% Similarity=0.062 Sum_probs=72.9
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcceeeeccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSYYAAGVPGSFY 117 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~f~~gvpgsFy 117 (329)
.+..+|+|+|||+|..+..+.. . .|..+++..|+........-+.+. -..++++.+ +..
T Consensus 24 ~~~~~vldiG~G~G~~~~~l~~--------~-------~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~---d~~ 85 (178)
T 3hm2_A 24 KPHETLWDIGGGSGSIAIEWLR--------S-------TPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQ---GAP 85 (178)
T ss_dssp CTTEEEEEESTTTTHHHHHHHT--------T-------SSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEEC---CTT
T ss_pred cCCCeEEEeCCCCCHHHHHHHH--------H-------CCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEec---chH
Confidence 3457999999999999988864 2 244689999998777666544321 111334443 443
Q ss_pred cccCCC--CceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 118 SSLFPK--SSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 118 ~~lfp~--~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
+ .+|. +++|+++++.++|| + .+|+...+.|+|||++++..+.
T Consensus 86 ~-~~~~~~~~~D~i~~~~~~~~----~-------------------------------~~l~~~~~~L~~gG~l~~~~~~ 129 (178)
T 3hm2_A 86 R-AFDDVPDNPDVIFIGGGLTA----P-------------------------------GVFAAAWKRLPVGGRLVANAVT 129 (178)
T ss_dssp G-GGGGCCSCCSEEEECC-TTC----T-------------------------------THHHHHHHTCCTTCEEEEEECS
T ss_pred h-hhhccCCCCCEEEECCcccH----H-------------------------------HHHHHHHHhcCCCCEEEEEeec
Confidence 3 3444 89999999999988 3 5689999999999999998754
Q ss_pred c
Q 037735 196 V 196 (329)
Q Consensus 196 ~ 196 (329)
.
T Consensus 130 ~ 130 (178)
T 3hm2_A 130 V 130 (178)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=2.4e-08 Score=83.38 Aligned_cols=111 Identities=16% Similarity=0.147 Sum_probs=74.2
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeecccccccccc-
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSL- 120 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~l- 120 (329)
+..+|+|+|||+|..+..+.+.. .|..+++..|+.. +.. ++ +.-+..+ ++.+-.
T Consensus 22 ~~~~vLd~G~G~G~~~~~l~~~~--------------~~~~~v~~~D~~~-~~~-----~~--~~~~~~~---d~~~~~~ 76 (180)
T 1ej0_A 22 PGMTVVDLGAAPGGWSQYVVTQI--------------GGKGRIIACDLLP-MDP-----IV--GVDFLQG---DFRDELV 76 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHH--------------CTTCEEEEEESSC-CCC-----CT--TEEEEES---CTTSHHH
T ss_pred CCCeEEEeCCCCCHHHHHHHHHh--------------CCCCeEEEEECcc-ccc-----cC--cEEEEEc---ccccchh
Confidence 45699999999999999887522 2335889999865 321 11 2223333 443322
Q ss_pred -------CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 121 -------FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 121 -------fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
++++++|+|+++..+||...... +..+ .......+|+...+-|+|||.++++.
T Consensus 77 ~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~---------------~~~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~ 136 (180)
T 1ej0_A 77 MKALLERVGDSKVQVVMSDMAPNMSGTPAV---------------DIPR-----AMYLVELALEMCRDVLAPGGSFVVKV 136 (180)
T ss_dssp HHHHHHHHTTCCEEEEEECCCCCCCSCHHH---------------HHHH-----HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhhccCCCCceeEEEECCCccccCCCcc---------------chHH-----HHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 77889999999999999653210 0000 01123688999999999999999988
Q ss_pred cccC
Q 037735 194 FSVP 197 (329)
Q Consensus 194 ~g~~ 197 (329)
+...
T Consensus 137 ~~~~ 140 (180)
T 1ej0_A 137 FQGE 140 (180)
T ss_dssp ESST
T ss_pred ecCC
Confidence 7544
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=98.66 E-value=3.4e-07 Score=77.95 Aligned_cols=118 Identities=18% Similarity=0.109 Sum_probs=78.5
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeecccccccccc-
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSL- 120 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~l- 120 (329)
+-.+|+|+|||+.. .-+-...++..+++... .+++...|. .+-.
T Consensus 12 ~g~~vL~~~~g~v~--vD~s~~ml~~a~~~~~~------~~~~~~~d~---------------------------~~~~~ 56 (176)
T 2ld4_A 12 AGQFVAVVWDKSSP--VEALKGLVDKLQALTGN------EGRVSVENI---------------------------KQLLQ 56 (176)
T ss_dssp TTSEEEEEECTTSC--HHHHHHHHHHHHHHTTT------TSEEEEEEG---------------------------GGGGG
T ss_pred CCCEEEEecCCcee--eeCCHHHHHHHHHhccc------CcEEEEech---------------------------hcCcc
Confidence 45789999999753 44445555555554211 133333332 1111
Q ss_pred --CCCCceeEEEeccceecc-cCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 121 --FPKSSLHFVHSSYTLHWL-SKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 121 --fp~~s~dl~~Ss~alhWL-s~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
+|++++|+|+|+.++||+ .+. ..+|+..++.|+|||++++......
T Consensus 57 ~~~~~~~fD~V~~~~~l~~~~~~~-------------------------------~~~l~~~~r~LkpgG~l~~~~~~~~ 105 (176)
T 2ld4_A 57 SAHKESSFDIILSGLVPGSTTLHS-------------------------------AEILAEIARILRPGGCLFLKEPVET 105 (176)
T ss_dssp GCCCSSCEEEEEECCSTTCCCCCC-------------------------------HHHHHHHHHHEEEEEEEEEEEEEES
T ss_pred ccCCCCCEeEEEECChhhhcccCH-------------------------------HHHHHHHHHHCCCCEEEEEEccccc
Confidence 378899999999999998 433 3789999999999999999643211
Q ss_pred CCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 198 DGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
... .. .|.++.+++.+.+++.| | +. ++.
T Consensus 106 ~~~-----------------------~~------~~~~~~~~~~~~l~~aG-f-i~-~~~ 133 (176)
T 2ld4_A 106 AVD-----------------------NN------SKVKTASKLCSALTLSG-L-VE-VKE 133 (176)
T ss_dssp SSC-----------------------SS------SSSCCHHHHHHHHHHTT-C-EE-EEE
T ss_pred ccc-----------------------cc------cccCCHHHHHHHHHHCC-C-cE-eec
Confidence 100 01 56789999999999985 8 66 443
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=98.65 E-value=8.9e-08 Score=85.92 Aligned_cols=118 Identities=15% Similarity=0.227 Sum_probs=78.1
Q ss_pred HhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC-
Q 037735 25 RYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ- 103 (329)
Q Consensus 25 ~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~- 103 (329)
..++.+.+.... ..+..+|+|+|||+|..+..+.+ . ..+++..|+...+....-+....
T Consensus 27 ~~~~~~~~~~~~---~~~~~~vLDlGcG~G~~~~~l~~--------~---------~~~v~gvD~s~~~l~~a~~~~~~~ 86 (252)
T 1wzn_A 27 IDFVEEIFKEDA---KREVRRVLDLACGTGIPTLELAE--------R---------GYEVVGLDLHEEMLRVARRKAKER 86 (252)
T ss_dssp HHHHHHHHHHTC---SSCCCEEEEETCTTCHHHHHHHH--------T---------TCEEEEEESCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc---ccCCCEEEEeCCCCCHHHHHHHH--------C---------CCeEEEEECCHHHHHHHHHHHHhc
Confidence 444454444321 23457999999999999988864 1 14799999987776665443321
Q ss_pred -CcceeeeccccccccccCCCCceeEEEecc-ceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHH
Q 037735 104 -SRSYYAAGVPGSFYSSLFPKSSLHFVHSSY-TLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQ 181 (329)
Q Consensus 104 -~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~-alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~ 181 (329)
.+..|..+ ++.+ +.+++++|+|++.. ++++++ ..|...+|+..++
T Consensus 87 ~~~v~~~~~---d~~~-~~~~~~fD~v~~~~~~~~~~~-----------------------------~~~~~~~l~~~~~ 133 (252)
T 1wzn_A 87 NLKIEFLQG---DVLE-IAFKNEFDAVTMFFSTIMYFD-----------------------------EEDLRKLFSKVAE 133 (252)
T ss_dssp TCCCEEEES---CGGG-CCCCSCEEEEEECSSGGGGSC-----------------------------HHHHHHHHHHHHH
T ss_pred CCceEEEEC---Chhh-cccCCCccEEEEcCCchhcCC-----------------------------HHHHHHHHHHHHH
Confidence 12234443 5644 33347899999874 455542 1256788999999
Q ss_pred HhccCceEEEEecc
Q 037735 182 ELVPGGLAALVMFS 195 (329)
Q Consensus 182 eL~pGG~l~~~~~g 195 (329)
.|+|||.+++.+..
T Consensus 134 ~L~pgG~li~~~~~ 147 (252)
T 1wzn_A 134 ALKPGGVFITDFPC 147 (252)
T ss_dssp HEEEEEEEEEEEEC
T ss_pred HcCCCeEEEEeccc
Confidence 99999999988754
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.62 E-value=7.6e-08 Score=83.39 Aligned_cols=111 Identities=14% Similarity=0.190 Sum_probs=70.4
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeecccccccccc-
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSL- 120 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~l- 120 (329)
+..+|+|+|||+|..|..+.+ ++. .+..+|+..|+.... .++ .-.|..+ ++.+..
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~--------~~~-----~~~~~v~gvD~s~~~------~~~--~v~~~~~---d~~~~~~ 77 (201)
T 2plw_A 22 KNKIILDIGCYPGSWCQVILE--------RTK-----NYKNKIIGIDKKIMD------PIP--NVYFIQG---EIGKDNM 77 (201)
T ss_dssp TTEEEEEESCTTCHHHHHHHH--------HTT-----TSCEEEEEEESSCCC------CCT--TCEEEEC---CTTTTSS
T ss_pred CCCEEEEeCCCCCHHHHHHHH--------HcC-----CCCceEEEEeCCccC------CCC--CceEEEc---cccchhh
Confidence 457999999999999998875 221 013689999987521 111 1123322 333222
Q ss_pred ------------------------CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHH
Q 037735 121 ------------------------FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFL 176 (329)
Q Consensus 121 ------------------------fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL 176 (329)
+|++++|+|+|..++||... + ....+. ..+....+|
T Consensus 78 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~-~-----------------~~d~~~--~~~~~~~~l 137 (201)
T 2plw_A 78 NNIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGN-K-----------------IDDHLN--SCELTLSIT 137 (201)
T ss_dssp CCC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSC-H-----------------HHHHHH--HHHHHHHHH
T ss_pred hhhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCC-c-----------------ccCHHH--HHHHHHHHH
Confidence 57789999999999999421 0 000000 011234578
Q ss_pred HHHHHHhccCceEEEEeccc
Q 037735 177 NTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 177 ~~ra~eL~pGG~l~~~~~g~ 196 (329)
+...+-|+|||.|++.++..
T Consensus 138 ~~~~~~LkpgG~lv~~~~~~ 157 (201)
T 2plw_A 138 HFMEQYINIGGTYIVKMYLG 157 (201)
T ss_dssp HHHHHHEEEEEEEEEEEECS
T ss_pred HHHHHHccCCCEEEEEEeCC
Confidence 88899999999999987653
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=98.61 E-value=1.6e-07 Score=82.67 Aligned_cols=113 Identities=11% Similarity=0.081 Sum_probs=75.9
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|..+..+.. . .|..+++..|+.......+-+.+. -.+-.|+.+...++ .
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~--------~-------~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~-~ 104 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAK--------Q-------NPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDL-T 104 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHH--------H-------CTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCG-G
T ss_pred CCCeEEEEccCcCHHHHHHHH--------H-------CCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHH-H
Confidence 356899999999999988865 2 345689999998777665544331 11233555432221 2
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
..+|++++|+|+++...+|....... . +-+...||+..++.|+|||.+++.+
T Consensus 105 ~~~~~~~~D~i~~~~~~~~~~~~~~~----~-------------------~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 105 DYFEDGEIDRLYLNFSDPWPKKRHEK----R-------------------RLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp GTSCTTCCSEEEEESCCCCCSGGGGG----G-------------------STTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred hhcCCCCCCEEEEECCCCccccchhh----h-------------------ccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 34788999999999877774321100 0 0023478999999999999999976
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.60 E-value=2e-07 Score=82.91 Aligned_cols=120 Identities=11% Similarity=0.051 Sum_probs=84.4
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeecccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~l 120 (329)
.+..+|+|+|||+|..+..+.+ . ..+|+..|+........-+..+ +..|..+ ++.+.+
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~--------~---------~~~v~~vD~s~~~~~~a~~~~~--~~~~~~~---d~~~~~ 104 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGP--------Q---------AARWAAYDFSPELLKLARANAP--HADVYEW---NGKGEL 104 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGG--------G---------SSEEEEEESCHHHHHHHHHHCT--TSEEEEC---CSCSSC
T ss_pred CCCCeEEEeCCCCCHHHHHHHH--------c---------CCEEEEEECCHHHHHHHHHhCC--CceEEEc---chhhcc
Confidence 3457999999999998888764 1 2589999998877666555533 2334444 454433
Q ss_pred -CC-CCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCC
Q 037735 121 -FP-KSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 121 -fp-~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
++ ++++|+|+|+ .+.+ .+|+..++.|+|||+|+ .+
T Consensus 105 ~~~~~~~fD~v~~~------~~~~-------------------------------~~l~~~~~~LkpgG~l~--~~---- 141 (226)
T 3m33_A 105 PAGLGAPFGLIVSR------RGPT-------------------------------SVILRLPELAAPDAHFL--YV---- 141 (226)
T ss_dssp CTTCCCCEEEEEEE------SCCS-------------------------------GGGGGHHHHEEEEEEEE--EE----
T ss_pred CCcCCCCEEEEEeC------CCHH-------------------------------HHHHHHHHHcCCCcEEE--Ee----
Confidence 66 8899999997 2222 56889999999999999 10
Q ss_pred CCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEee
Q 037735 199 GIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMT 259 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~ 259 (329)
....+.+++...++.. +|++..++...
T Consensus 142 ---------------------------------~~~~~~~~~~~~l~~~-Gf~~~~~~~~~ 168 (226)
T 3m33_A 142 ---------------------------------GPRLNVPEVPERLAAV-GWDIVAEDHVS 168 (226)
T ss_dssp ---------------------------------ESSSCCTHHHHHHHHT-TCEEEEEEEEE
T ss_pred ---------------------------------CCcCCHHHHHHHHHHC-CCeEEEEEeee
Confidence 1123567788888888 48888777543
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.59 E-value=5.4e-08 Score=84.06 Aligned_cols=108 Identities=13% Similarity=0.110 Sum_probs=75.7
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|..+..+++ .+..+|+..|+.......+-+++. -.+--|..+ ++.+
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~----------------~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~---d~~~ 104 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALS----------------RGAASVLFVESDQRSAAVIARNIEALGLSGATLRRG---AVAA 104 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHH----------------TTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEES---CHHH
T ss_pred CCCEEEEeCCCcCHHHHHHHH----------------CCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEc---cHHH
Confidence 457899999999999987754 122479999998777666544331 112234554 4543
Q ss_pred cc--CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHH--HhccCceEEEEec
Q 037735 119 SL--FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQ--ELVPGGLAALVMF 194 (329)
Q Consensus 119 ~l--fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~--eL~pGG~l~~~~~ 194 (329)
-+ ++++++|+|+++..+||.. .|+..+|....+ .|+|||++++...
T Consensus 105 ~~~~~~~~~fD~i~~~~p~~~~~------------------------------~~~~~~l~~~~~~~~L~pgG~l~~~~~ 154 (189)
T 3p9n_A 105 VVAAGTTSPVDLVLADPPYNVDS------------------------------ADVDAILAALGTNGWTREGTVAVVERA 154 (189)
T ss_dssp HHHHCCSSCCSEEEECCCTTSCH------------------------------HHHHHHHHHHHHSSSCCTTCEEEEEEE
T ss_pred HHhhccCCCccEEEECCCCCcch------------------------------hhHHHHHHHHHhcCccCCCeEEEEEec
Confidence 33 4678999999987777631 245577888888 9999999999887
Q ss_pred ccCC
Q 037735 195 SVPD 198 (329)
Q Consensus 195 g~~~ 198 (329)
.+..
T Consensus 155 ~~~~ 158 (189)
T 3p9n_A 155 TTCA 158 (189)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 6554
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=98.58 E-value=9.7e-08 Score=84.69 Aligned_cols=111 Identities=10% Similarity=0.093 Sum_probs=75.5
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|..+..+.. . .|..+++..|+........-+.+. ...-.|+.+ ++.+
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~--------~-------~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~---d~~~ 99 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAK--------Q-------NPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNI---DADT 99 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHH--------H-------CTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECC---CGGG
T ss_pred CCceEEEEecCCCHHHHHHHH--------H-------CCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeC---CHHH
Confidence 346899999999999998864 2 355789999999877666544321 111234444 4432
Q ss_pred --ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 119 --SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 119 --~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
..+|++++|.+++++...|..+... +.++ ....||+..++.|+|||.+++.+
T Consensus 100 l~~~~~~~~~d~v~~~~~~p~~~~~~~----~~rl-------------------~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 100 LTDVFEPGEVKRVYLNFSDPWPKKRHE----KRRL-------------------TYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp HHHHCCTTSCCEEEEESCCCCCSGGGG----GGST-------------------TSHHHHHHHHHHHTTSCEEEEEE
T ss_pred HHhhcCcCCcCEEEEECCCCCcCcccc----cccc-------------------CcHHHHHHHHHHcCCCCEEEEEe
Confidence 3478999999998877777432110 0000 12478999999999999999987
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=3.3e-07 Score=82.33 Aligned_cols=155 Identities=14% Similarity=0.069 Sum_probs=84.8
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCC-cchHHhh---hhcCC---CCcceeeeccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHS-DNDFNTL---FKSLP---QSRSYYAAGVP 113 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp-~ndfn~l---f~~l~---~~~~~f~~gvp 113 (329)
....+|||+|||+|.++..+.. + .|..+|+..|+. .++.... -+... .....|..+
T Consensus 23 ~~~~~vLDiGCG~G~~~~~la~--------~-------~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~-- 85 (225)
T 3p2e_A 23 QFDRVHIDLGTGDGRNIYKLAI--------N-------DQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIA-- 85 (225)
T ss_dssp TCSEEEEEETCTTSHHHHHHHH--------T-------CTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECC--
T ss_pred CCCCEEEEEeccCcHHHHHHHH--------h-------CCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEc--
Confidence 3457999999999999988863 2 345789999998 5553332 22211 111234444
Q ss_pred cccccccCCC---CceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEE
Q 037735 114 GSFYSSLFPK---SSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAA 190 (329)
Q Consensus 114 gsFy~~lfp~---~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~ 190 (329)
+. +.+ |. +.++.+++++...++ ...-..|...+|+..++.|+|||+|+
T Consensus 86 -d~-~~l-~~~~~d~v~~i~~~~~~~~~--------------------------~~~~~~~~~~~l~~~~r~LkpGG~l~ 136 (225)
T 3p2e_A 86 -AA-ESL-PFELKNIADSISILFPWGTL--------------------------LEYVIKPNRDILSNVADLAKKEAHFE 136 (225)
T ss_dssp -BT-TBC-CGGGTTCEEEEEEESCCHHH--------------------------HHHHHTTCHHHHHHHHTTEEEEEEEE
T ss_pred -CH-HHh-hhhccCeEEEEEEeCCCcHH--------------------------hhhhhcchHHHHHHHHHhcCCCcEEE
Confidence 33 222 33 456666555432221 00111233578999999999999999
Q ss_pred EEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCc-ccCCCHHHHHHHHHhCCceEEeEEEEeecC
Q 037735 191 LVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEK-MYNPTPKELEGIIQRNGNFTIERMEKMTNP 261 (329)
Q Consensus 191 ~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~-~y~ps~eE~~~~i~~~g~f~i~~~e~~~~~ 261 (329)
+.+...++.... ...++ +. ..-. -|++ .+|+.+.+++. +|++...+.+..+
T Consensus 137 i~~~~~~~~~~~------------~~~~~-----~~-~~~~~~~~~-~~el~~~l~~a-Gf~v~~~~~~~~~ 188 (225)
T 3p2e_A 137 FVTTYSDSYEEA------------EIKKR-----GL-PLLSKAYFL-SEQYKAELSNS-GFRIDDVKELDNE 188 (225)
T ss_dssp EEECCCC--------------------------------CCHHHHH-SHHHHHHHHHH-TCEEEEEEEECHH
T ss_pred EEEeccccchhc------------hhhhc-----CC-CCCChhhcc-hHHHHHHHHHc-CCCeeeeeecCHH
Confidence 954322221110 00001 10 0000 1212 24689999888 5999999988543
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=98.57 E-value=3.3e-07 Score=83.17 Aligned_cols=100 Identities=21% Similarity=0.232 Sum_probs=72.9
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeecccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~l 120 (329)
.+..+|+|+|||+|..+..+.+ . .|..+++..|+..+.....-+..+. ..|..+ ++....
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~--------~-------~~~~~v~~vD~s~~~~~~a~~~~~~--~~~~~~---d~~~~~ 143 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFAD--------A-------LPEITTFGLDVSKVAIKAAAKRYPQ--VTFCVA---SSHRLP 143 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHH--------T-------CTTSEEEEEESCHHHHHHHHHHCTT--SEEEEC---CTTSCS
T ss_pred CCCCEEEEECCCCCHHHHHHHH--------h-------CCCCeEEEEeCCHHHHHHHHHhCCC--cEEEEc---chhhCC
Confidence 3457999999999999998875 1 1235899999988776665544432 234443 454444
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCC
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
++++++|+|+|+.+ +. +|+...+.|+|||++++.+++.++
T Consensus 144 ~~~~~fD~v~~~~~-------~~-------------------------------~l~~~~~~L~pgG~l~~~~~~~~~ 183 (269)
T 1p91_A 144 FSDTSMDAIIRIYA-------PC-------------------------------KAEELARVVKPGGWVITATPGPRH 183 (269)
T ss_dssp BCTTCEEEEEEESC-------CC-------------------------------CHHHHHHHEEEEEEEEEEEECTTT
T ss_pred CCCCceeEEEEeCC-------hh-------------------------------hHHHHHHhcCCCcEEEEEEcCHHH
Confidence 78899999998654 32 278889999999999999988754
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=98.57 E-value=2e-07 Score=80.55 Aligned_cols=115 Identities=19% Similarity=0.209 Sum_probs=74.9
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC----Ccceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ----SRSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~----~~~~f~~gvpgsFy 117 (329)
+..+|+|+|||+|..+..+.+.+ .|..+++..|+........-+.+.. .+--++.+ ++.
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~~~--------------~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~~ 84 (197)
T 3eey_A 22 EGDTVVDATCGNGNDTAFLASLV--------------GENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKD---GHQ 84 (197)
T ss_dssp TTCEEEESCCTTSHHHHHHHHHH--------------CTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECS---CGG
T ss_pred CCCEEEEcCCCCCHHHHHHHHHh--------------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEEC---CHH
Confidence 34699999999999999887632 2335899999987776665444321 12234444 453
Q ss_pred ccc-CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 118 SSL-FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 118 ~~l-fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
+-. ++++++|+++++..+ +|..+ ..+. .. ..|...+|+...+.|+|||++++..+.
T Consensus 85 ~~~~~~~~~fD~v~~~~~~-----~~~~~---~~~~---~~-----------~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 141 (197)
T 3eey_A 85 NMDKYIDCPVKAVMFNLGY-----LPSGD---HSIS---TR-----------PETTIQALSKAMELLVTGGIITVVIYY 141 (197)
T ss_dssp GGGGTCCSCEEEEEEEESB-----CTTSC---TTCB---CC-----------HHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred HHhhhccCCceEEEEcCCc-----ccCcc---cccc---cC-----------cccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence 333 567899999998766 22110 0000 01 114456899999999999999998764
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-07 Score=91.00 Aligned_cols=103 Identities=19% Similarity=0.116 Sum_probs=73.2
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---C-Ccceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---Q-SRSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~-~~~~f~~gvpgsFy 117 (329)
+..+|||+|||+|..+..+.+ .+..+|+..|+. .+....-+.+. - .+--|+.| ++.
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~----------------~g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~---d~~ 125 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAK----------------AGARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKG---KVE 125 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHH----------------TTCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEES---CTT
T ss_pred CCCEEEEEeccchHHHHHHHH----------------CCCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEEC---cHH
Confidence 357899999999999888874 122489999998 45444433221 1 11234444 564
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEE
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALV 192 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~ 192 (329)
+-.+|++++|+|+|....+++...+ ++..+|..+.+.|+|||+|++.
T Consensus 126 ~~~~~~~~fD~Iis~~~~~~l~~~~----------------------------~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 126 EVELPVEKVDIIISEWMGYCLFYES----------------------------MLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp TCCCSSSCEEEEEECCCBBTBTBTC----------------------------CHHHHHHHHHHHEEEEEEEESC
T ss_pred HccCCCCceEEEEEccccccccCch----------------------------hHHHHHHHHHHhCCCCCEEccc
Confidence 5458889999999988777765433 5668899999999999999743
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=98.55 E-value=3.4e-08 Score=84.18 Aligned_cols=105 Identities=10% Similarity=0.088 Sum_probs=75.3
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCc--ceeeecccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSR--SYYAAGVPGSF 116 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~--~~f~~gvpgsF 116 (329)
+..+|+|+|||+|..+..+.. . ..+++..|+........-+.+. ... ..+..+ ++
T Consensus 52 ~~~~vLdiG~G~G~~~~~~~~--------~---------~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~---d~ 111 (194)
T 1dus_A 52 KDDDILDLGCGYGVIGIALAD--------E---------VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHS---DL 111 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGG--------G---------SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEEC---ST
T ss_pred CCCeEEEeCCCCCHHHHHHHH--------c---------CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEEC---ch
Confidence 457999999999999887763 1 2589999998766555443321 111 234433 55
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
.+ .++++++|+|+++..+||- ..++..+|+...+.|+|||.+++.....
T Consensus 112 ~~-~~~~~~~D~v~~~~~~~~~------------------------------~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 160 (194)
T 1dus_A 112 YE-NVKDRKYNKIITNPPIRAG------------------------------KEVLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp TT-TCTTSCEEEEEECCCSTTC------------------------------HHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred hc-ccccCCceEEEECCCcccc------------------------------hhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 44 5667899999998888871 1245688999999999999999998765
Q ss_pred C
Q 037735 197 P 197 (329)
Q Consensus 197 ~ 197 (329)
.
T Consensus 161 ~ 161 (194)
T 1dus_A 161 Q 161 (194)
T ss_dssp H
T ss_pred C
Confidence 3
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.55 E-value=8.2e-08 Score=83.75 Aligned_cols=103 Identities=10% Similarity=0.048 Sum_probs=71.7
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcceeeeccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSYYAAGVPGSFY 117 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~f~~gvpgsFy 117 (329)
.+..+|+|+|||+|..+..+.. . .|..+++..|........+-+.+. -.+--+.. +++.
T Consensus 39 ~~~~~vLDiG~G~G~~~~~la~--------~-------~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~---~d~~ 100 (204)
T 3e05_A 39 QDDLVMWDIGAGSASVSIEASN--------L-------MPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVE---AFAP 100 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHH--------H-------CTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEE---CCTT
T ss_pred CCCCEEEEECCCCCHHHHHHHH--------H-------CCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEe---CChh
Confidence 3457999999999999988875 2 234689999998776655543321 11122333 3554
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
+.+.+.+++|++++..+++ +...+|+...+.|+|||++++....
T Consensus 101 ~~~~~~~~~D~i~~~~~~~----------------------------------~~~~~l~~~~~~LkpgG~l~~~~~~ 144 (204)
T 3e05_A 101 EGLDDLPDPDRVFIGGSGG----------------------------------MLEEIIDAVDRRLKSEGVIVLNAVT 144 (204)
T ss_dssp TTCTTSCCCSEEEESCCTT----------------------------------CHHHHHHHHHHHCCTTCEEEEEECB
T ss_pred hhhhcCCCCCEEEECCCCc----------------------------------CHHHHHHHHHHhcCCCeEEEEEecc
Confidence 4444447899999876554 2347899999999999999997644
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=2.5e-07 Score=84.36 Aligned_cols=122 Identities=14% Similarity=0.124 Sum_probs=83.6
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--Ccceeeeccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--SRSYYAAGVPGSFYSS 119 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--~~~~f~~gvpgsFy~~ 119 (329)
+..+|+|+|||+|..+..+.+ . .+ +|+..|+........-++... ..--+.. +++..
T Consensus 120 ~~~~VLDiGcG~G~l~~~la~--------~-------g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~---~d~~~- 178 (254)
T 2nxc_A 120 PGDKVLDLGTGSGVLAIAAEK--------L-------GG--KALGVDIDPMVLPQAEANAKRNGVRPRFLE---GSLEA- 178 (254)
T ss_dssp TTCEEEEETCTTSHHHHHHHH--------T-------TC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEE---SCHHH-
T ss_pred CCCEEEEecCCCcHHHHHHHH--------h-------CC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEE---CChhh-
Confidence 357999999999998887653 1 22 799999987666555443221 1112333 34433
Q ss_pred cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCC
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDG 199 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~ 199 (329)
.+|++++|+++++...|++ ..++...++.|+|||+++++.+..
T Consensus 179 ~~~~~~fD~Vv~n~~~~~~----------------------------------~~~l~~~~~~LkpgG~lils~~~~--- 221 (254)
T 2nxc_A 179 ALPFGPFDLLVANLYAELH----------------------------------AALAPRYREALVPGGRALLTGILK--- 221 (254)
T ss_dssp HGGGCCEEEEEEECCHHHH----------------------------------HHHHHHHHHHEEEEEEEEEEEEEG---
T ss_pred cCcCCCCCEEEECCcHHHH----------------------------------HHHHHHHHHHcCCCCEEEEEeecc---
Confidence 3577899999997655542 367888999999999999975432
Q ss_pred CcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 200 IPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 200 ~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
.+.+++.+.+++. +|++.+...
T Consensus 222 -----------------------------------~~~~~v~~~l~~~-Gf~~~~~~~ 243 (254)
T 2nxc_A 222 -----------------------------------DRAPLVREAMAGA-GFRPLEEAA 243 (254)
T ss_dssp -----------------------------------GGHHHHHHHHHHT-TCEEEEEEE
T ss_pred -----------------------------------CCHHHHHHHHHHC-CCEEEEEec
Confidence 2367788888887 488877654
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=3.7e-07 Score=89.33 Aligned_cols=128 Identities=14% Similarity=0.126 Sum_probs=84.0
Q ss_pred CCceEEEeeeCC------CCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeecccc
Q 037735 41 PNTFRIADFGCS------TGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPG 114 (329)
Q Consensus 41 ~~~~~IaDlGCs------tG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpg 114 (329)
.++.+|||+||| +|..|+.++... .|..+|+..|+..++. + ...+--|..|
T Consensus 215 ~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~--------------fP~a~V~GVDiSp~m~---~---~~~rI~fv~G--- 271 (419)
T 3sso_A 215 NQQVRVLEIGVGGYKHPEWGGGSLRMWKSF--------------FPRGQIYGLDIMDKSH---V---DELRIRTIQG--- 271 (419)
T ss_dssp TSCCEEEEECCSCTTCSSCCCHHHHHHHHH--------------CTTCEEEEEESSCCGG---G---CBTTEEEEEC---
T ss_pred CCCCEEEEEecCCCcCCCCCHHHHHHHHHh--------------CCCCEEEEEECCHHHh---h---cCCCcEEEEe---
Confidence 457899999999 888888877522 3457899999987762 1 1122345555
Q ss_pred ccccccCC------CCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCce
Q 037735 115 SFYSSLFP------KSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGL 188 (329)
Q Consensus 115 sFy~~lfp------~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~ 188 (329)
+..+.-|+ ++++|+|+|..+ ||.. |...+|+...+.|+|||+
T Consensus 272 Da~dlpf~~~l~~~d~sFDlVisdgs-H~~~-------------------------------d~~~aL~el~rvLKPGGv 319 (419)
T 3sso_A 272 DQNDAEFLDRIARRYGPFDIVIDDGS-HINA-------------------------------HVRTSFAALFPHVRPGGL 319 (419)
T ss_dssp CTTCHHHHHHHHHHHCCEEEEEECSC-CCHH-------------------------------HHHHHHHHHGGGEEEEEE
T ss_pred cccccchhhhhhcccCCccEEEECCc-ccch-------------------------------hHHHHHHHHHHhcCCCeE
Confidence 45333355 689999999865 5422 445789999999999999
Q ss_pred EEEEecccCCCCcc----c-CCcccchHHHHHHHHHHHHh
Q 037735 189 AALVMFSVPDGIPL----V-NNAAGSFYNTFGSCLVELTK 223 (329)
Q Consensus 189 l~~~~~g~~~~~~~----~-~~~~~~~~~~l~~a~~~l~~ 223 (329)
+++.-+-..-.... . ......+.+.++..+..+-.
T Consensus 320 lVi~Dl~tsy~p~f~G~~~~~~~~~tii~~lk~l~D~l~~ 359 (419)
T 3sso_A 320 YVIEDMWTAYWPGFGGQADPQECSGTSLGLLKSLIDAIQH 359 (419)
T ss_dssp EEEECGGGGGCTBTTCCSSTTCCTTSHHHHHHHHHHHHTG
T ss_pred EEEEecccccCcccCCCccCCcchhHHHHHHHHHHHHhcc
Confidence 99986642211000 0 01223467777777777743
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.4e-07 Score=89.47 Aligned_cols=105 Identities=14% Similarity=0.135 Sum_probs=74.1
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC----Ccceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ----SRSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~----~~~~f~~gvpgsF 116 (329)
.+..+|||+|||+|..++.+.+ . .. .+|+..|+. ++...+-+.+.. .+-.++.| ++
T Consensus 62 ~~~~~VLDlGcGtG~ls~~la~--------~-------g~-~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~---d~ 121 (376)
T 3r0q_C 62 FEGKTVLDVGTGSGILAIWSAQ--------A-------GA-RKVYAVEAT-KMADHARALVKANNLDHIVEVIEG---SV 121 (376)
T ss_dssp TTTCEEEEESCTTTHHHHHHHH--------T-------TC-SEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEES---CG
T ss_pred CCCCEEEEeccCcCHHHHHHHh--------c-------CC-CEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEEC---ch
Confidence 3457999999999999888764 1 11 389999998 766554433311 11234444 56
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
.+-.+| +++|+|+|....|++...+ ++..+|+.+.+-|+|||+|+++..
T Consensus 122 ~~~~~~-~~~D~Iv~~~~~~~l~~e~----------------------------~~~~~l~~~~~~LkpgG~li~~~~ 170 (376)
T 3r0q_C 122 EDISLP-EKVDVIISEWMGYFLLRES----------------------------MFDSVISARDRWLKPTGVMYPSHA 170 (376)
T ss_dssp GGCCCS-SCEEEEEECCCBTTBTTTC----------------------------THHHHHHHHHHHEEEEEEEESSEE
T ss_pred hhcCcC-CcceEEEEcChhhcccchH----------------------------HHHHHHHHHHhhCCCCeEEEEecC
Confidence 444455 8999999988778775432 567899999999999999987543
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=2.3e-07 Score=79.34 Aligned_cols=112 Identities=12% Similarity=0.121 Sum_probs=69.4
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|..|..+.+ . ..+|+..|+...+....-+.+. -.+-.|..+ ++..
T Consensus 22 ~~~~vLDiGcG~G~~~~~la~----------------~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~---~~~~ 81 (185)
T 3mti_A 22 DESIVVDATMGNGNDTAFLAG----------------L-SKKVYAFDVQEQALGKTSQRLSDLGIENTELILD---GHEN 81 (185)
T ss_dssp TTCEEEESCCTTSHHHHHHHT----------------T-SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEES---CGGG
T ss_pred CCCEEEEEcCCCCHHHHHHHH----------------h-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeC---cHHH
Confidence 457899999999999998874 1 2589999998877666544332 112234433 3422
Q ss_pred cc-CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 119 SL-FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 119 ~l-fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
-. ++++++|+++++. +|+...... +. ....+...+|+...+.|+|||+|++..+.
T Consensus 82 l~~~~~~~fD~v~~~~--~~~~~~~~~---------------~~-----~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 82 LDHYVREPIRAAIFNL--GYLPSADKS---------------VI-----TKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp GGGTCCSCEEEEEEEE--C-------------------------------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred HHhhccCCcCEEEEeC--CCCCCcchh---------------cc-----cChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 11 5688999998763 554321100 00 00123456789999999999999998764
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.6e-07 Score=85.08 Aligned_cols=116 Identities=13% Similarity=0.022 Sum_probs=72.1
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC--------CCCc-ceeeec
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL--------PQSR-SYYAAG 111 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l--------~~~~-~~f~~g 111 (329)
.+..+|||+|||+|..+..+.. . .|...++..|+...+....-+.+ .... --|+.+
T Consensus 45 ~~~~~vLDiGcG~G~~~~~la~--------~-------~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~ 109 (235)
T 3ckk_A 45 QAQVEFADIGCGYGGLLVELSP--------L-------FPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRS 109 (235)
T ss_dssp -CCEEEEEETCTTCHHHHHHGG--------G-------STTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEEC
T ss_pred CCCCeEEEEccCCcHHHHHHHH--------H-------CCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 3457899999999999988863 2 35578999999877655432111 1112 235554
Q ss_pred cccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEE
Q 037735 112 VPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAAL 191 (329)
Q Consensus 112 vpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~ 191 (329)
....+....||++++|.++..+.-.|..+... +.+ -....||+.-++.|+|||.|++
T Consensus 110 d~~~~l~~~~~~~~~D~v~~~~~dp~~k~~h~----krr-------------------~~~~~~l~~~~~~LkpGG~l~~ 166 (235)
T 3ckk_A 110 NAMKHLPNFFYKGQLTKMFFLFPDPHFKRTKH----KWR-------------------IISPTLLAEYAYVLRVGGLVYT 166 (235)
T ss_dssp CTTTCHHHHCCTTCEEEEEEESCC----------------------------------CCCHHHHHHHHHHEEEEEEEEE
T ss_pred cHHHhhhhhCCCcCeeEEEEeCCCchhhhhhh----hhh-------------------hhhHHHHHHHHHHCCCCCEEEE
Confidence 32222233478999999998877777432110 000 0113789999999999999999
Q ss_pred Eec
Q 037735 192 VMF 194 (329)
Q Consensus 192 ~~~ 194 (329)
.+.
T Consensus 167 ~td 169 (235)
T 3ckk_A 167 ITD 169 (235)
T ss_dssp EES
T ss_pred EeC
Confidence 873
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.9e-07 Score=90.66 Aligned_cols=106 Identities=20% Similarity=0.194 Sum_probs=78.5
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--Ccceeeeccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--SRSYYAAGVPGSFYSS 119 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--~~~~f~~gvpgsFy~~ 119 (329)
+..+|+|+|||+|..+..+.+ . ..+|+..|.........-+++.. ...-|+. +++.+-
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~--------~---------g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~---~D~~~~ 292 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLAR--------M---------GAEVVGVEDDLASVLSLQKGLEANALKAQALH---SDVDEA 292 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHH--------T---------TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEE---CSTTTT
T ss_pred CCCEEEEEeeeCCHHHHHHHH--------c---------CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEE---cchhhc
Confidence 457999999999999999874 1 14899999977666555444321 1123444 356565
Q ss_pred cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
+.+++++|+|+|+..+||-..... .+...|++...+.|+|||.++++.
T Consensus 293 ~~~~~~fD~Ii~npp~~~~~~~~~--------------------------~~~~~~l~~~~~~LkpGG~l~iv~ 340 (381)
T 3dmg_A 293 LTEEARFDIIVTNPPFHVGGAVIL--------------------------DVAQAFVNVAAARLRPGGVFFLVS 340 (381)
T ss_dssp SCTTCCEEEEEECCCCCTTCSSCC--------------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccCCCeEEEEECCchhhcccccH--------------------------HHHHHHHHHHHHhcCcCcEEEEEE
Confidence 666789999999999999554431 256689999999999999999986
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.48 E-value=6.1e-07 Score=75.65 Aligned_cols=97 Identities=12% Similarity=0.077 Sum_probs=66.3
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcceeeeccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSYYAAGVPGSFY 117 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~f~~gvpgsFy 117 (329)
.+..+|+|+|||+|..+..+.. +..+++..|.........-+.+. -.+-.+.. +++.
T Consensus 34 ~~~~~vLdiG~G~G~~~~~l~~-----------------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~---~d~~ 93 (183)
T 2yxd_A 34 NKDDVVVDVGCGSGGMTVEIAK-----------------RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIK---GRAE 93 (183)
T ss_dssp CTTCEEEEESCCCSHHHHHHHT-----------------TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEE---SCHH
T ss_pred CCCCEEEEeCCCCCHHHHHHHh-----------------cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEE---CCcc
Confidence 3457999999999999988863 23589999998766655444331 11222333 3565
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
+ .+|++++|+++++.. . ++..+|+...+. |||.+++....
T Consensus 94 ~-~~~~~~~D~i~~~~~-------~----------------------------~~~~~l~~~~~~--~gG~l~~~~~~ 133 (183)
T 2yxd_A 94 D-VLDKLEFNKAFIGGT-------K----------------------------NIEKIIEILDKK--KINHIVANTIV 133 (183)
T ss_dssp H-HGGGCCCSEEEECSC-------S----------------------------CHHHHHHHHHHT--TCCEEEEEESC
T ss_pred c-cccCCCCcEEEECCc-------c----------------------------cHHHHHHHHhhC--CCCEEEEEecc
Confidence 5 677789999999877 1 233566665555 99999998854
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=98.46 E-value=8.9e-08 Score=83.00 Aligned_cols=126 Identities=12% Similarity=0.036 Sum_probs=65.8
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC--cceeeecccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS--RSYYAAGVPGSFYS 118 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~--~~~f~~gvpgsFy~ 118 (329)
.+..+|+|+|||+|..+..+.+ . .|..+++..|+........-+.+... +-.+.. +++.+
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~--------~-------~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~---~d~~~ 90 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIAL--------A-------CPGVSVTAVDLSMDALAVARRNAERFGAVVDWAA---ADGIE 90 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHH--------H-------CTTEEEEEEECC-------------------CCH---HHHHH
T ss_pred CCCCEEEEecCCHhHHHHHHHH--------h-------CCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEE---cchHh
Confidence 4568999999999999988875 2 23468999999776655544433221 112333 35644
Q ss_pred ccCCC-----CceeEEEeccceecccCCCCC-----CCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCce
Q 037735 119 SLFPK-----SSLHFVHSSYTLHWLSKVPKV-----DGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGL 188 (329)
Q Consensus 119 ~lfp~-----~s~dl~~Ss~alhWLs~~p~~-----~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~ 188 (329)
.+++ +++|+|+++-.+++....... .+.... .... .......+..|++...+.|+|||+
T Consensus 91 -~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~-~~~~---------~~~~~~~~~~~l~~~~~~LkpgG~ 159 (215)
T 4dzr_A 91 -WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRL-ALDG---------GEDGLQFYRRMAALPPYVLARGRA 159 (215)
T ss_dssp -HHHHHHHTTCCBSEEEECCCCCC----------------------------------CTTHHHHHHHTCCGGGBCSSSE
T ss_pred -hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccc-cccC---------CCcHHHHHHHHHHHHHHHhcCCCe
Confidence 5565 899999998776654433211 000000 0000 000112236889999999999999
Q ss_pred EEEEecc
Q 037735 189 AALVMFS 195 (329)
Q Consensus 189 l~~~~~g 195 (329)
|++...+
T Consensus 160 l~~~~~~ 166 (215)
T 4dzr_A 160 GVFLEVG 166 (215)
T ss_dssp EEEEECT
T ss_pred EEEEEEC
Confidence 5555443
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.6e-07 Score=82.07 Aligned_cols=98 Identities=12% Similarity=0.062 Sum_probs=70.4
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcceeeeccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSYYAAGVPGSFY 117 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~f~~gvpgsFy 117 (329)
.+..+|+|+|||+|..+..+.+. ..+|+..|.........-+.+. -.+-.+.. +++.
T Consensus 76 ~~~~~vLdiG~G~G~~~~~la~~-----------------~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~---~d~~ 135 (210)
T 3lbf_A 76 TPQSRVLEIGTGSGYQTAILAHL-----------------VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRH---GDGW 135 (210)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH-----------------SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEE---SCGG
T ss_pred CCCCEEEEEcCCCCHHHHHHHHh-----------------CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEE---CCcc
Confidence 34679999999999999888641 1479999998766665544332 11223444 3565
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
+.+.+.+++|+|+++.++||+.+ ...+.|+|||+|++++..
T Consensus 136 ~~~~~~~~~D~i~~~~~~~~~~~-------------------------------------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 136 QGWQARAPFDAIIVTAAPPEIPT-------------------------------------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp GCCGGGCCEEEEEESSBCSSCCT-------------------------------------HHHHTEEEEEEEEEEECS
T ss_pred cCCccCCCccEEEEccchhhhhH-------------------------------------HHHHhcccCcEEEEEEcC
Confidence 65667789999999999988531 235789999999999876
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=98.45 E-value=6.5e-07 Score=79.46 Aligned_cols=101 Identities=10% Similarity=0.026 Sum_probs=65.4
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHh---hhhcCCCCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNT---LFKSLPQSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~---lf~~l~~~~~~f~~gvpgsFy~ 118 (329)
+..+|||+|||||..|..+.+ .. +..+|+..|+...+... ..+... ...++.+ +...
T Consensus 57 ~g~~VLDlGcGtG~~~~~la~--------~~-------~~~~V~gvD~s~~~l~~~~~~a~~~~--~v~~~~~---d~~~ 116 (210)
T 1nt2_A 57 GDERVLYLGAASGTTVSHLAD--------IV-------DEGIIYAVEYSAKPFEKLLELVRERN--NIIPLLF---DASK 116 (210)
T ss_dssp SSCEEEEETCTTSHHHHHHHH--------HT-------TTSEEEEECCCHHHHHHHHHHHHHCS--SEEEECS---CTTC
T ss_pred CCCEEEEECCcCCHHHHHHHH--------Hc-------CCCEEEEEECCHHHHHHHHHHHhcCC--CeEEEEc---CCCC
Confidence 456899999999999988865 21 12489999998764322 222222 1233443 3322
Q ss_pred c---cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 119 S---LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 119 ~---lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
. ..+.+++|+++|+.+- | .+...+|+..++.|+|||+|++++..
T Consensus 117 ~~~~~~~~~~fD~V~~~~~~------~---------------------------~~~~~~l~~~~r~LkpgG~l~i~~~~ 163 (210)
T 1nt2_A 117 PWKYSGIVEKVDLIYQDIAQ------K---------------------------NQIEILKANAEFFLKEKGEVVIMVKA 163 (210)
T ss_dssp GGGTTTTCCCEEEEEECCCS------T---------------------------THHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred chhhcccccceeEEEEeccC------h---------------------------hHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 1 2224899999997311 1 12235689999999999999999644
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=98.44 E-value=6.4e-07 Score=78.89 Aligned_cols=99 Identities=12% Similarity=0.001 Sum_probs=68.1
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CCC-cceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQS-RSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~~-~~~f~~gvpgsF 116 (329)
.+..+|+|+|||+|..+..+.. . ..+|+..|+........-+.+ .-. .--++.| ++
T Consensus 54 ~~~~~vLDlGcG~G~~~~~la~--------~---------~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~---d~ 113 (204)
T 3njr_A 54 RRGELLWDIGGGSGSVSVEWCL--------A---------GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQG---TA 113 (204)
T ss_dssp CTTCEEEEETCTTCHHHHHHHH--------T---------TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES---CT
T ss_pred CCCCEEEEecCCCCHHHHHHHH--------c---------CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeC---ch
Confidence 3457899999999999988874 1 258999999877665544332 111 2234443 56
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
.+.+.+..++|++++..++ +.. +++...+.|+|||++++....
T Consensus 114 ~~~~~~~~~~D~v~~~~~~-----------------------------------~~~-~l~~~~~~LkpgG~lv~~~~~ 156 (204)
T 3njr_A 114 PAALADLPLPEAVFIGGGG-----------------------------------SQA-LYDRLWEWLAPGTRIVANAVT 156 (204)
T ss_dssp TGGGTTSCCCSEEEECSCC-----------------------------------CHH-HHHHHHHHSCTTCEEEEEECS
T ss_pred hhhcccCCCCCEEEECCcc-----------------------------------cHH-HHHHHHHhcCCCcEEEEEecC
Confidence 4444444579999976533 113 689999999999999998854
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.44 E-value=2.7e-07 Score=81.78 Aligned_cols=98 Identities=15% Similarity=0.038 Sum_probs=68.9
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC-cceeeeccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS-RSYYAAGVPGSFYSS 119 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~-~~~f~~gvpgsFy~~ 119 (329)
.+..+|+|+|||+|..+..+.. . . .+++..|.........-+.+... ..-+..+ ++.+.
T Consensus 69 ~~~~~vLdiG~G~G~~~~~l~~--------~-------~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~---d~~~~ 128 (231)
T 1vbf_A 69 HKGQKVLEIGTGIGYYTALIAE--------I-------V--DKVVSVEINEKMYNYASKLLSYYNNIKLILG---DGTLG 128 (231)
T ss_dssp CTTCEEEEECCTTSHHHHHHHH--------H-------S--SEEEEEESCHHHHHHHHHHHTTCSSEEEEES---CGGGC
T ss_pred CCCCEEEEEcCCCCHHHHHHHH--------H-------c--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEEC---Ccccc
Confidence 3456999999999999988864 1 1 37899999877666555444322 1224443 55443
Q ss_pred cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
+.+++++|+|++..++|++ + ....+.|+|||++++.+..
T Consensus 129 ~~~~~~fD~v~~~~~~~~~---~----------------------------------~~~~~~L~pgG~l~~~~~~ 167 (231)
T 1vbf_A 129 YEEEKPYDRVVVWATAPTL---L----------------------------------CKPYEQLKEGGIMILPIGV 167 (231)
T ss_dssp CGGGCCEEEEEESSBBSSC---C----------------------------------HHHHHTEEEEEEEEEEECS
T ss_pred cccCCCccEEEECCcHHHH---H----------------------------------HHHHHHcCCCcEEEEEEcC
Confidence 4457899999999999874 2 1345789999999999754
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.9e-07 Score=89.20 Aligned_cols=106 Identities=16% Similarity=0.123 Sum_probs=72.0
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC-----C-cceeeecccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ-----S-RSYYAAGVPGSF 116 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~-----~-~~~f~~gvpgsF 116 (329)
..+|+|+|||+|..+..+.. . .|..+|+..|.........-+++.. . +--|.. +++
T Consensus 223 ~~~VLDlGcG~G~~s~~la~--------~-------~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~---~D~ 284 (375)
T 4dcm_A 223 EGEIVDLGCGNGVIGLTLLD--------K-------NPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMI---NNA 284 (375)
T ss_dssp CSEEEEETCTTCHHHHHHHH--------H-------CTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEE---CST
T ss_pred CCeEEEEeCcchHHHHHHHH--------H-------CCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEe---chh
Confidence 37999999999999998875 2 3446899999987665554443321 0 112333 356
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
++ .+|++++|+|+|+-.+|+...++.. ....||+...+.|+|||.|+++.
T Consensus 285 ~~-~~~~~~fD~Ii~nppfh~~~~~~~~--------------------------~~~~~l~~~~~~LkpgG~l~iv~ 334 (375)
T 4dcm_A 285 LS-GVEPFRFNAVLCNPPFHQQHALTDN--------------------------VAWEMFHHARRCLKINGELYIVA 334 (375)
T ss_dssp TT-TCCTTCEEEEEECCCC-------CC--------------------------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hc-cCCCCCeeEEEECCCcccCcccCHH--------------------------HHHHHHHHHHHhCCCCcEEEEEE
Confidence 44 5688899999999999986554422 22368999999999999999975
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=4.3e-07 Score=81.80 Aligned_cols=108 Identities=14% Similarity=0.130 Sum_probs=68.5
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--Ccceeeecccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--SRSYYAAGVPGSFYS 118 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--~~~~f~~gvpgsFy~ 118 (329)
....+|||+|||+|.++..+.+ . .| .+++.-|+.......+-+.... ....++.| ++..
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~--------~-------~~-~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~---~a~~ 119 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQE--------A-------PI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKG---LWED 119 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTT--------S-------CE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEES---CHHH
T ss_pred cCCCeEEEECCCccHHHHHHHH--------h-------CC-cEEEEEeCCHHHHHHHHHHHhhCCCceEEEee---hHHh
Confidence 4558999999999998877753 1 34 3788899987776654333221 11223333 3322
Q ss_pred --ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 119 --SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 119 --~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
.-+|++++|.++.-.......... ..|...||++.+|.|||||+|++..
T Consensus 120 ~~~~~~~~~FD~i~~D~~~~~~~~~~--------------------------~~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 120 VAPTLPDGHFDGILYDTYPLSEETWH--------------------------THQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp HGGGSCTTCEEEEEECCCCCBGGGTT--------------------------THHHHHHHHTHHHHEEEEEEEEECC
T ss_pred hcccccccCCceEEEeeeecccchhh--------------------------hcchhhhhhhhhheeCCCCEEEEEe
Confidence 237899999997432221111111 1266789999999999999998753
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.5e-07 Score=83.34 Aligned_cols=116 Identities=15% Similarity=0.047 Sum_probs=79.7
Q ss_pred hhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---C
Q 037735 26 YDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---P 102 (329)
Q Consensus 26 ~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~ 102 (329)
|.+++--..+... .+.+.+|+|+|||+|+.++.++. ..|..++...|....+..-.-+.+ .
T Consensus 34 p~ld~fY~~~~~~-l~~~~~VLDlGCG~GplAl~l~~---------------~~p~a~~~A~Di~~~~leiar~~~~~~g 97 (200)
T 3fzg_A 34 ATLNDFYTYVFGN-IKHVSSILDFGCGFNPLALYQWN---------------ENEKIIYHAYDIDRAEIAFLSSIIGKLK 97 (200)
T ss_dssp GGHHHHHHHHHHH-SCCCSEEEEETCTTHHHHHHHHC---------------SSCCCEEEEECSCHHHHHHHHHHHHHSC
T ss_pred HhHHHHHHHHHhh-cCCCCeEEEecCCCCHHHHHHHh---------------cCCCCEEEEEeCCHHHHHHHHHHHHhcC
Confidence 6666543321111 24578999999999999999874 256789999999887766544433 2
Q ss_pred CCcceeeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHH
Q 037735 103 QSRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQE 182 (329)
Q Consensus 103 ~~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~e 182 (329)
...++-++ +.-. ..|++++|++.++.++|-|.+.+.. +..-.+.
T Consensus 98 ~~~~v~~~----d~~~-~~~~~~~DvVLa~k~LHlL~~~~~a-------------------------------l~~v~~~ 141 (200)
T 3fzg_A 98 TTIKYRFL----NKES-DVYKGTYDVVFLLKMLPVLKQQDVN-------------------------------ILDFLQL 141 (200)
T ss_dssp CSSEEEEE----CCHH-HHTTSEEEEEEEETCHHHHHHTTCC-------------------------------HHHHHHT
T ss_pred CCccEEEe----cccc-cCCCCCcChhhHhhHHHhhhhhHHH-------------------------------HHHHHHH
Confidence 21123222 3423 3688999999999999999766644 6678899
Q ss_pred hccCceEEEEec
Q 037735 183 LVPGGLAALVMF 194 (329)
Q Consensus 183 L~pGG~l~~~~~ 194 (329)
|+|||+ ++++.
T Consensus 142 L~pggv-fISfp 152 (200)
T 3fzg_A 142 FHTQNF-VISFP 152 (200)
T ss_dssp CEEEEE-EEEEE
T ss_pred hCCCCE-EEEeC
Confidence 999976 45665
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.39 E-value=3.6e-07 Score=80.02 Aligned_cols=101 Identities=10% Similarity=0.065 Sum_probs=68.5
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcceeeeccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSYYAAGVPGSFY 117 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~f~~gvpgsFy 117 (329)
.+..+|+|+|||+|..+..+.... .|..+++..|...+.....-+.+. .....+..+ ++.
T Consensus 76 ~~~~~vLdiG~G~G~~~~~l~~~~--------------~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~---d~~ 138 (215)
T 2yxe_A 76 KPGMKVLEIGTGCGYHAAVTAEIV--------------GEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVG---DGT 138 (215)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHH--------------CTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEES---CGG
T ss_pred CCCCEEEEECCCccHHHHHHHHHh--------------CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEEC---Ccc
Confidence 345799999999999999887522 233589999998766555433321 111223333 453
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
..+.+++++|+|+++.++|++ + ....+.|+|||+|++.+..
T Consensus 139 ~~~~~~~~fD~v~~~~~~~~~---~----------------------------------~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 139 LGYEPLAPYDRIYTTAAGPKI---P----------------------------------EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp GCCGGGCCEEEEEESSBBSSC---C----------------------------------HHHHHTEEEEEEEEEEESS
T ss_pred cCCCCCCCeeEEEECCchHHH---H----------------------------------HHHHHHcCCCcEEEEEECC
Confidence 333336789999999999974 2 2446789999999999754
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.36 E-value=9.9e-07 Score=78.63 Aligned_cols=104 Identities=9% Similarity=0.052 Sum_probs=67.7
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC-Ccceeeecccccccc--
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ-SRSYYAAGVPGSFYS-- 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~-~~~~f~~gvpgsFy~-- 118 (329)
+..+|+|+|||+|..+..+.+.. .|..+|+..|+.......+.+.... ..-.|..+ ++.+
T Consensus 77 ~~~~vLDlG~G~G~~~~~la~~~--------------g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~---d~~~~~ 139 (233)
T 2ipx_A 77 PGAKVLYLGAASGTTVSHVSDIV--------------GPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIE---DARHPH 139 (233)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHH--------------CTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECS---CTTCGG
T ss_pred CCCEEEEEcccCCHHHHHHHHHh--------------CCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEc---ccCChh
Confidence 35699999999999999987622 2335899999986543332221110 12234444 4433
Q ss_pred -ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 119 -SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 119 -~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
..++++++|+|++..+ .| .....++....+.|+|||++++++..
T Consensus 140 ~~~~~~~~~D~V~~~~~------~~---------------------------~~~~~~~~~~~~~LkpgG~l~i~~~~ 184 (233)
T 2ipx_A 140 KYRMLIAMVDVIFADVA------QP---------------------------DQTRIVALNAHTFLRNGGHFVISIKA 184 (233)
T ss_dssp GGGGGCCCEEEEEECCC------CT---------------------------THHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred hhcccCCcEEEEEEcCC------Cc---------------------------cHHHHHHHHHHHHcCCCeEEEEEEcc
Confidence 1246789999999544 11 01235688889999999999997764
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.36 E-value=3.4e-06 Score=76.59 Aligned_cols=121 Identities=11% Similarity=0.035 Sum_probs=71.8
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CC-cceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QS-RSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~-~~~f~~gvpgsFy 117 (329)
+..+|+|+|||+|..++.+.+ + .+ .+|+..|+........-+++. -. +-.++.+ ++.
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~--------~-------~~-~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~---D~~ 109 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLST--------R-------TK-AKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEY---DLK 109 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHT--------T-------CC-CEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECS---CGG
T ss_pred CCCEEEEcCCchhHHHHHHHH--------h-------cC-CcEEEEECCHHHHHHHHHHHHHCCCcccEEEEEC---cHH
Confidence 467999999999999888764 2 22 289999998776665544332 11 2234444 453
Q ss_pred ccc--CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHH-HHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 118 SSL--FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAY-AAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 118 ~~l--fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay-~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
+-. ++++++|+|+|+-.++........ ++....+. ......++..|++..++-|+|||+|++..
T Consensus 110 ~~~~~~~~~~fD~Ii~npPy~~~~~~~~~------------~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 176 (259)
T 3lpm_A 110 KITDLIPKERADIVTCNPPYFATPDTSLK------------NTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVH 176 (259)
T ss_dssp GGGGTSCTTCEEEEEECCCC-----------------------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhhhhhccCCccEEEECCCCCCCccccCC------------CCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEE
Confidence 332 578999999997655443110000 00000000 01123467899999999999999999954
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=7.7e-07 Score=84.79 Aligned_cols=101 Identities=17% Similarity=0.195 Sum_probs=67.3
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---C-Ccceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---Q-SRSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~-~~~~f~~gvpgsFy 117 (329)
+..+|+|+|||+|..+..+.+ . +..+|+..|+.. +....-+.+. - .+-.++.| ++.
T Consensus 64 ~~~~VLDiGcGtG~ls~~la~--------~--------g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~---d~~ 123 (340)
T 2fyt_A 64 KDKVVLDVGCGTGILSMFAAK--------A--------GAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKG---KIE 123 (340)
T ss_dssp TTCEEEEETCTTSHHHHHHHH--------T--------TCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEES---CTT
T ss_pred CCCEEEEeeccCcHHHHHHHH--------c--------CCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEe---eHH
Confidence 456999999999999887764 1 114799999874 5444333221 1 12234443 554
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEE
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAA 190 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~ 190 (329)
+..+|++++|+|+|....+-+... .++..+|..+.+-|+|||+++
T Consensus 124 ~~~~~~~~~D~Ivs~~~~~~l~~~----------------------------~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 124 EVHLPVEKVDVIISEWMGYFLLFE----------------------------SMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp TSCCSCSCEEEEEECCCBTTBTTT----------------------------CHHHHHHHHHHHHEEEEEEEE
T ss_pred HhcCCCCcEEEEEEcCchhhccCH----------------------------HHHHHHHHHHHhhcCCCcEEE
Confidence 445788999999997632222211 255688999999999999998
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=98.34 E-value=1.7e-06 Score=81.85 Aligned_cols=101 Identities=21% Similarity=0.199 Sum_probs=67.6
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC----Ccceeeecccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ----SRSYYAAGVPGSFYS 118 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~----~~~~f~~gvpgsFy~ 118 (329)
..+|+|+|||+|..+..+.+ .+..+|+..|+. .+...+-+.+.. .+--++. +++.+
T Consensus 39 ~~~VLDiGcGtG~ls~~la~----------------~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~---~d~~~ 98 (328)
T 1g6q_1 39 DKIVLDVGCGTGILSMFAAK----------------HGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLR---GKLED 98 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHH----------------TCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEE---SCTTT
T ss_pred CCEEEEecCccHHHHHHHHH----------------CCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEE---Cchhh
Confidence 46899999999998887764 122479999997 454443332211 1123444 35544
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEE
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAAL 191 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~ 191 (329)
-.+|++++|+|+|....+.+... .++..+|..+.+-|+|||+++.
T Consensus 99 ~~~~~~~~D~Ivs~~~~~~l~~~----------------------------~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 99 VHLPFPKVDIIISEWMGYFLLYE----------------------------SMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp SCCSSSCEEEEEECCCBTTBSTT----------------------------CCHHHHHHHHHHHEEEEEEEES
T ss_pred ccCCCCcccEEEEeCchhhcccH----------------------------HHHHHHHHHHHhhcCCCeEEEE
Confidence 44777899999998554443322 2456889999999999999973
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.33 E-value=4.2e-07 Score=83.52 Aligned_cols=100 Identities=10% Similarity=0.169 Sum_probs=69.9
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC----CCCcceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL----PQSRSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l----~~~~~~f~~gvpgsF 116 (329)
.+..+|+|+|||+|..+..+...+ .|..+|+..|+........-+.+ ...+--|.. +++
T Consensus 109 ~~~~~VLD~G~G~G~~~~~la~~~--------------~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~---~d~ 171 (275)
T 1yb2_A 109 RPGMDILEVGVGSGNMSSYILYAL--------------NGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSR---SDI 171 (275)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHH--------------TTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEEC---SCT
T ss_pred CCcCEEEEecCCCCHHHHHHHHHc--------------CCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEE---Cch
Confidence 345799999999999999887532 23468999999876655543333 111223444 356
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
.+ .+|++++|++++ ++|.. ..+|+...+.|+|||+|++++.
T Consensus 172 ~~-~~~~~~fD~Vi~--------~~~~~----------------------------~~~l~~~~~~LkpgG~l~i~~~ 212 (275)
T 1yb2_A 172 AD-FISDQMYDAVIA--------DIPDP----------------------------WNHVQKIASMMKPGSVATFYLP 212 (275)
T ss_dssp TT-CCCSCCEEEEEE--------CCSCG----------------------------GGSHHHHHHTEEEEEEEEEEES
T ss_pred hc-cCcCCCccEEEE--------cCcCH----------------------------HHHHHHHHHHcCCCCEEEEEeC
Confidence 44 678889999998 23311 2568999999999999999873
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=2.5e-07 Score=86.01 Aligned_cols=114 Identities=13% Similarity=0.227 Sum_probs=70.2
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC-----------cceeee
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS-----------RSYYAA 110 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~-----------~~~f~~ 110 (329)
++.+|+|+|||||..+-.+.-.+ .+.+... ....+|+..|+..++....-+.+.+. ..||.-
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L----~e~~~~~---~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~ 177 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITL----ADALGMA---PGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMR 177 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHH----HHHHCSC---TTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEE
T ss_pred CCcEEEEeeccCChhHHHHHHHH----HHhcccC---CCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhc
Confidence 46899999999998543221111 1121110 11368999999988877655433110 012210
Q ss_pred c--------------------cccccccccCC-CCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHh
Q 037735 111 G--------------------VPGSFYSSLFP-KSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFN 169 (329)
Q Consensus 111 g--------------------vpgsFy~~lfp-~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~ 169 (329)
+ ..++..+..+| .+++|+|+|.+.|+|+++ +
T Consensus 178 ~~~~~~~~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~-~--------------------------- 229 (274)
T 1af7_A 178 GTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDK-T--------------------------- 229 (274)
T ss_dssp CCTTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCH-H---------------------------
T ss_pred cccCCCCceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCH-H---------------------------
Confidence 0 11223332244 578999999999999853 1
Q ss_pred hcHHHHHHHHHHHhccCceEEE
Q 037735 170 NDFQTFLNTRAQELVPGGLAAL 191 (329)
Q Consensus 170 ~D~~~FL~~ra~eL~pGG~l~~ 191 (329)
+..+.++.-++.|+|||+|++
T Consensus 230 -~~~~vl~~~~~~L~pgG~L~l 250 (274)
T 1af7_A 230 -TQEDILRRFVPLLKPDGLLFA 250 (274)
T ss_dssp -HHHHHHHHHGGGEEEEEEEEE
T ss_pred -HHHHHHHHHHHHhCCCcEEEE
Confidence 235789999999999999987
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.5e-07 Score=89.56 Aligned_cols=106 Identities=17% Similarity=0.187 Sum_probs=74.5
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--CCcceeeecccccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--QSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~~~~~f~~gvpgsFy~~l 120 (329)
..+|+|+|||+|..+..+.. . .|..+|+..|.........-+.+. .....+.. ++++.
T Consensus 197 ~~~VLDlGcG~G~~~~~la~--------~-------~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~---~d~~~-- 256 (343)
T 2pjd_A 197 KGKVLDVGCGAGVLSVAFAR--------H-------SPKIRLTLCDVSAPAVEASRATLAANGVEGEVFA---SNVFS-- 256 (343)
T ss_dssp CSBCCBTTCTTSHHHHHHHH--------H-------CTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEE---CSTTT--
T ss_pred CCeEEEecCccCHHHHHHHH--------H-------CCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEE---ccccc--
Confidence 45899999999999988864 2 244689999998766555443331 11122333 35544
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
++++++|+|+|+..+||..... ..+...+|+..++.|+|||.|++...
T Consensus 257 ~~~~~fD~Iv~~~~~~~g~~~~--------------------------~~~~~~~l~~~~~~LkpgG~l~i~~~ 304 (343)
T 2pjd_A 257 EVKGRFDMIISNPPFHDGMQTS--------------------------LDAAQTLIRGAVRHLNSGGELRIVAN 304 (343)
T ss_dssp TCCSCEEEEEECCCCCSSSHHH--------------------------HHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred cccCCeeEEEECCCcccCccCC--------------------------HHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence 3478999999999999832111 23567899999999999999999764
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=98.31 E-value=1.4e-06 Score=78.48 Aligned_cols=114 Identities=13% Similarity=0.026 Sum_probs=71.5
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC-------c---------
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS-------R--------- 105 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~-------~--------- 105 (329)
...+|+|+|||+|..+..+...+ + .+..+|+..|+........-+.+... +
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~------~-------~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~ 117 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLH------R-------RSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSE 117 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHT------G-------GGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHh------c-------cCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhh
Confidence 56899999999999888876521 0 12358999999866655443222111 0
Q ss_pred ----------------ce-------------eeeccccccccccC-----CCCceeEEEeccceecccCCCCCCCCccce
Q 037735 106 ----------------SY-------------YAAGVPGSFYSSLF-----PKSSLHFVHSSYTLHWLSKVPKVDGVEGSI 151 (329)
Q Consensus 106 ----------------~~-------------f~~gvpgsFy~~lf-----p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i 151 (329)
-- |..+ ++.+.+. +.+++|+|+|+..++-..+.+..
T Consensus 118 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~------- 187 (250)
T 1o9g_A 118 RFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTA---DVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQ------- 187 (250)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEEC---CTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSC-------
T ss_pred hcccccchhhhhhhhhhhhhccccccccccceeec---ccccccccccccCCCCceEEEeCCCeecccccccc-------
Confidence 01 4443 4544332 44589999998655543332210
Q ss_pred eecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 152 QTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 152 ~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
. ...+...||+.-++.|+|||+|+++.
T Consensus 188 ----~-----------~~~~~~~~l~~~~~~LkpgG~l~~~~ 214 (250)
T 1o9g_A 188 ----V-----------PGQPVAGLLRSLASALPAHAVIAVTD 214 (250)
T ss_dssp ----C-----------CHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred ----c-----------cccHHHHHHHHHHHhcCCCcEEEEeC
Confidence 0 01345688999999999999999843
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.6e-06 Score=80.23 Aligned_cols=107 Identities=15% Similarity=0.089 Sum_probs=68.8
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCC-CcchHHhhhhcC-----CCC--------cce
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDH-SDNDFNTLFKSL-----PQS--------RSY 107 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDL-p~ndfn~lf~~l-----~~~--------~~~ 107 (329)
...+|+|+|||+|..++.+.. . ...+|+..|+ .......+-++. ... +-.
T Consensus 79 ~~~~vLDlG~G~G~~~~~~a~--------~--------~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~ 142 (281)
T 3bzb_A 79 AGKTVCELGAGAGLVSIVAFL--------A--------GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPK 142 (281)
T ss_dssp TTCEEEETTCTTSHHHHHHHH--------T--------TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCE
T ss_pred CCCeEEEecccccHHHHHHHH--------c--------CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeE
Confidence 346899999999999887653 1 1137999999 454444433332 110 111
Q ss_pred eeeccccccccccC---CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhc
Q 037735 108 YAAGVPGSFYSSLF---PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELV 184 (329)
Q Consensus 108 f~~gvpgsFy~~lf---p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~ 184 (329)
+....-++....+. +++++|+|+++.++++.. +...+|+...+-|+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~-------------------------------~~~~ll~~l~~~Lk 191 (281)
T 3bzb_A 143 VVPYRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQ-------------------------------AHDALLRSVKMLLA 191 (281)
T ss_dssp EEECCTTSCTHHHHHHHSCSSBSEEEEESCCSCGG-------------------------------GHHHHHHHHHHHBC
T ss_pred EEEecCCCccHHHHhhccCCCCCEEEEeCcccChH-------------------------------HHHHHHHHHHHHhc
Confidence 22222223223333 578999999999888843 34478999999999
Q ss_pred ---c--CceEEEEecc
Q 037735 185 ---P--GGLAALVMFS 195 (329)
Q Consensus 185 ---p--GG~l~~~~~g 195 (329)
| ||.+++.+..
T Consensus 192 ~~~p~~gG~l~v~~~~ 207 (281)
T 3bzb_A 192 LPANDPTAVALVTFTH 207 (281)
T ss_dssp CTTTCTTCEEEEEECC
T ss_pred ccCCCCCCEEEEEEEe
Confidence 9 9998886644
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=2.5e-06 Score=80.30 Aligned_cols=99 Identities=8% Similarity=-0.095 Sum_probs=70.8
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CCCcceeeeccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQSRSYYAAGVPGSFY 117 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~~~~~f~~gvpgsFy 117 (329)
.+..+|||+|||+|+.|..++. + .+..+|+.-|+...+....-+.+ .-.+--|+.|. +.
T Consensus 121 ~~g~rVLDIGcG~G~~ta~~lA--------~-------~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gD---a~ 182 (298)
T 3fpf_A 121 RRGERAVFIGGGPLPLTGILLS--------H-------VYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGD---ET 182 (298)
T ss_dssp CTTCEEEEECCCSSCHHHHHHH--------H-------TTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESC---GG
T ss_pred CCcCEEEEECCCccHHHHHHHH--------H-------ccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECc---hh
Confidence 4568999999999998877654 2 23468999999877665543332 21233466653 43
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
+ +|++++|+|++... +| |...+|+...+.|+|||+|++..
T Consensus 183 ~--l~d~~FDvV~~~a~------~~----------------------------d~~~~l~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 183 V--IDGLEFDVLMVAAL------AE----------------------------PKRRVFRNIHRYVDTETRIIYRT 222 (298)
T ss_dssp G--GGGCCCSEEEECTT------CS----------------------------CHHHHHHHHHHHCCTTCEEEEEE
T ss_pred h--CCCCCcCEEEECCC------cc----------------------------CHHHHHHHHHHHcCCCcEEEEEc
Confidence 3 46899999998654 23 44588999999999999999876
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.30 E-value=2e-06 Score=78.65 Aligned_cols=120 Identities=18% Similarity=0.218 Sum_probs=73.9
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---C----cceeeecccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---S----RSYYAAGVPG 114 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~----~~~f~~gvpg 114 (329)
+..+|+|+|||+|..++.+.+ + .|..+|+..|+-.......-+++.. . +-.++.+
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~--------~-------~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~--- 97 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAA--------R-------LEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEA--- 97 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHH--------H-------CTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEEC---
T ss_pred CCCEEEEeCChHhHHHHHHHH--------h-------CCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeC---
Confidence 457999999999999988875 2 2346899999987666665554432 1 1234444
Q ss_pred ccccc-------cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHH-HhhcHHHHHHHHHHHhccC
Q 037735 115 SFYSS-------LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQ-FNNDFQTFLNTRAQELVPG 186 (329)
Q Consensus 115 sFy~~-------lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q-~~~D~~~FL~~ra~eL~pG 186 (329)
++.+- .++++++|+|+|+--+++..... .++..++.+.. ...++..||+..++-|+||
T Consensus 98 D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~--------------~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkpg 163 (260)
T 2ozv_A 98 DVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRR--------------TPDALKAEAHAMTEGLFEDWIRTASAIMVSG 163 (260)
T ss_dssp CTTCCHHHHHHTTCCTTCEEEEEECCCC-----------------------------------CCHHHHHHHHHHHEEEE
T ss_pred CHHHHhhhhhhhccCCCCcCEEEECCCCcCCCCCC--------------CcCHHHHHHhhcCcCCHHHHHHHHHHHcCCC
Confidence 45332 36789999999986655542111 01111111111 1235789999999999999
Q ss_pred ceEEEEe
Q 037735 187 GLAALVM 193 (329)
Q Consensus 187 G~l~~~~ 193 (329)
|+|++..
T Consensus 164 G~l~~~~ 170 (260)
T 2ozv_A 164 GQLSLIS 170 (260)
T ss_dssp EEEEEEE
T ss_pred CEEEEEE
Confidence 9999975
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.30 E-value=5.7e-07 Score=94.75 Aligned_cols=108 Identities=13% Similarity=0.049 Sum_probs=79.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--------C-Ccceeeecc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--------Q-SRSYYAAGV 112 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--------~-~~~~f~~gv 112 (329)
+..+|||+|||+|.++..+.. .. .|..+|+..|+...+....-+.+. . .+--|..|
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr--------~g------~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqG- 785 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLD--------YP------TSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDG- 785 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTS--------SC------CCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEES-
T ss_pred CCCEEEEECCCCCHHHHHHHH--------hC------CCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEEC-
Confidence 457999999999999988863 10 233589999999877766544221 1 12234444
Q ss_pred ccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEE
Q 037735 113 PGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALV 192 (329)
Q Consensus 113 pgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~ 192 (329)
++.+..++++++|+|+++.++||+.+. +...|++...+.|+|| +++++
T Consensus 786 --Da~dLp~~d~sFDlVV~~eVLeHL~dp-----------------------------~l~~~L~eI~RvLKPG-~LIIS 833 (950)
T 3htx_A 786 --SILEFDSRLHDVDIGTCLEVIEHMEED-----------------------------QACEFGEKVLSLFHPK-LLIVS 833 (950)
T ss_dssp --CTTSCCTTSCSCCEEEEESCGGGSCHH-----------------------------HHHHHHHHHHHTTCCS-EEEEE
T ss_pred --chHhCCcccCCeeEEEEeCchhhCChH-----------------------------HHHHHHHHHHHHcCCC-EEEEE
Confidence 565656788999999999999997531 2347899999999999 88888
Q ss_pred eccc
Q 037735 193 MFSV 196 (329)
Q Consensus 193 ~~g~ 196 (329)
++..
T Consensus 834 TPN~ 837 (950)
T 3htx_A 834 TPNY 837 (950)
T ss_dssp ECBG
T ss_pred ecCc
Confidence 8654
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.30 E-value=2.2e-06 Score=78.16 Aligned_cols=101 Identities=14% Similarity=0.155 Sum_probs=70.2
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC----C--CCcceeeeccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL----P--QSRSYYAAGVPGS 115 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l----~--~~~~~f~~gvpgs 115 (329)
+..+|+|+|||+|.++..+...+ .|..+++..|+........-+.+ . ..+-.+.. ++
T Consensus 99 ~~~~vLdiG~G~G~~~~~l~~~~--------------~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~---~d 161 (280)
T 1i9g_A 99 PGARVLEAGAGSGALTLSLLRAV--------------GPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVV---SD 161 (280)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHH--------------CTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEEC---SC
T ss_pred CCCEEEEEcccccHHHHHHHHHh--------------CCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEE---Cc
Confidence 45689999999999999887532 24468999999766655543332 1 11122333 46
Q ss_pred cccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 116 FYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 116 Fy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
+.+..++++++|++++.. |.. ..+|....+.|+|||.+++.+..
T Consensus 162 ~~~~~~~~~~~D~v~~~~--------~~~----------------------------~~~l~~~~~~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 162 LADSELPDGSVDRAVLDM--------LAP----------------------------WEVLDAVSRLLVAGGVLMVYVAT 205 (280)
T ss_dssp GGGCCCCTTCEEEEEEES--------SCG----------------------------GGGHHHHHHHEEEEEEEEEEESS
T ss_pred hHhcCCCCCceeEEEECC--------cCH----------------------------HHHHHHHHHhCCCCCEEEEEeCC
Confidence 756567889999999832 211 15589999999999999998854
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.30 E-value=9.1e-07 Score=76.07 Aligned_cols=116 Identities=18% Similarity=0.159 Sum_probs=69.9
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhc--CCCCccceEEecCCCcchHHhhhhcCCCCcceee-ecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHE--CPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYA-AGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~--~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~-~gvpgsFy~ 118 (329)
+..+|+|+|||+|..|..+.+ ++... ....|..+|+..|+.... .++ ...+. . +++..
T Consensus 22 ~~~~vLDlGcG~G~~~~~la~--------~~~~~~~~~~~~~~~v~~vD~s~~~------~~~--~~~~~~~---~d~~~ 82 (196)
T 2nyu_A 22 PGLRVLDCGAAPGAWSQVAVQ--------KVNAAGTDPSSPVGFVLGVDLLHIF------PLE--GATFLCP---ADVTD 82 (196)
T ss_dssp TTCEEEEETCCSCHHHHHHHH--------HTTTTCCCTTSCCCEEEEECSSCCC------CCT--TCEEECS---CCTTS
T ss_pred CCCEEEEeCCCCCHHHHHHHH--------HhccccccccCCCceEEEEechhcc------cCC--CCeEEEe---ccCCC
Confidence 457999999999999998875 22110 001223589999987521 111 11223 2 23332
Q ss_pred --------ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEE
Q 037735 119 --------SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAA 190 (329)
Q Consensus 119 --------~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~ 190 (329)
..++++++|+|+|..++||.-... ... .........+|+...+.|+|||.|+
T Consensus 83 ~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~------------------~~~--~~~~~~~~~~l~~~~~~LkpgG~lv 142 (196)
T 2nyu_A 83 PRTSQRILEVLPGRRADVILSDMAPNATGFRD------------------LDH--DRLISLCLTLLSVTPDILQPGGTFL 142 (196)
T ss_dssp HHHHHHHHHHSGGGCEEEEEECCCCCCCSCHH------------------HHH--HHHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred HHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcc------------------cCH--HHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 125667999999987766632100 000 0011233578999999999999999
Q ss_pred EEeccc
Q 037735 191 LVMFSV 196 (329)
Q Consensus 191 ~~~~g~ 196 (329)
+..+..
T Consensus 143 ~~~~~~ 148 (196)
T 2nyu_A 143 CKTWAG 148 (196)
T ss_dssp EEECCS
T ss_pred EEecCC
Confidence 987643
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.29 E-value=6.5e-07 Score=80.40 Aligned_cols=98 Identities=13% Similarity=0.061 Sum_probs=67.9
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CCCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~~~~~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|..+..+.. . .|..+|+..|....+...+-+.. .-..--|+.| ++.+
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~--------~-------~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~---d~~~ 131 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKI--------C-------FPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHD---RAET 131 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHH--------H-------CTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEES---CHHH
T ss_pred CCCEEEEecCCCCHHHHHHHH--------h-------CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEec---cHHH
Confidence 457999999999999998864 1 24468999999876655543322 1111234443 5544
Q ss_pred ccCC---CCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEE
Q 037735 119 SLFP---KSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALV 192 (329)
Q Consensus 119 ~lfp---~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~ 192 (329)
-.++ ++++|+|+|.. ++ |+..+++..++.|+|||++++.
T Consensus 132 ~~~~~~~~~~fD~V~~~~-------~~----------------------------~~~~~l~~~~~~LkpgG~l~~~ 173 (240)
T 1xdz_A 132 FGQRKDVRESYDIVTARA-------VA----------------------------RLSVLSELCLPLVKKNGLFVAL 173 (240)
T ss_dssp HTTCTTTTTCEEEEEEEC-------CS----------------------------CHHHHHHHHGGGEEEEEEEEEE
T ss_pred hcccccccCCccEEEEec-------cC----------------------------CHHHHHHHHHHhcCCCCEEEEE
Confidence 3343 68999999855 11 4558899999999999999885
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.29 E-value=1.2e-06 Score=74.31 Aligned_cols=106 Identities=8% Similarity=-0.062 Sum_probs=68.2
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC----cceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS----RSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~----~~~f~~gvpgsFy 117 (329)
+..+|+|+|||+|..+..+.+ .+..+|+..|+.......+-+.+... +-.+.. +++.
T Consensus 31 ~~~~vLDlGcG~G~~~~~l~~----------------~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~---~d~~ 91 (177)
T 2esr_A 31 NGGRVLDLFAGSGGLAIEAVS----------------RGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLK---MEAE 91 (177)
T ss_dssp CSCEEEEETCTTCHHHHHHHH----------------TTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEEC---SCHH
T ss_pred CCCeEEEeCCCCCHHHHHHHH----------------cCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEE---CcHH
Confidence 456899999999999988764 12248999999877666554433211 122443 3554
Q ss_pred ccc-CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHH--HHHhccCceEEEEec
Q 037735 118 SSL-FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTR--AQELVPGGLAALVMF 194 (329)
Q Consensus 118 ~~l-fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~r--a~eL~pGG~l~~~~~ 194 (329)
+.+ ..++++|+++++..+++- ++..+++.- .+.|+|||++++.+.
T Consensus 92 ~~~~~~~~~fD~i~~~~~~~~~--------------------------------~~~~~~~~l~~~~~L~~gG~l~~~~~ 139 (177)
T 2esr_A 92 RAIDCLTGRFDLVFLDPPYAKE--------------------------------TIVATIEALAAKNLLSEQVMVVCETD 139 (177)
T ss_dssp HHHHHBCSCEEEEEECCSSHHH--------------------------------HHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred HhHHhhcCCCCEEEECCCCCcc--------------------------------hHHHHHHHHHhCCCcCCCcEEEEEEC
Confidence 422 345679999987554331 112333333 488999999999987
Q ss_pred ccCC
Q 037735 195 SVPD 198 (329)
Q Consensus 195 g~~~ 198 (329)
....
T Consensus 140 ~~~~ 143 (177)
T 2esr_A 140 KTVL 143 (177)
T ss_dssp TTCC
T ss_pred Cccc
Confidence 7654
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=98.28 E-value=1.8e-06 Score=76.89 Aligned_cols=101 Identities=10% Similarity=0.071 Sum_probs=68.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC-cceeeecccccccc--
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS-RSYYAAGVPGSFYS-- 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~-~~~f~~gvpgsFy~-- 118 (329)
+..+|+|+|||+|..+..+.+ .+ +..+|+..|........+-+..... +-.++.+ ++..
T Consensus 74 ~~~~VLDlGcG~G~~~~~la~--------~~-------~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~---d~~~~~ 135 (230)
T 1fbn_A 74 RDSKILYLGASAGTTPSHVAD--------IA-------DKGIVYAIEYAPRIMRELLDACAERENIIPILG---DANKPQ 135 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHH--------HT-------TTSEEEEEESCHHHHHHHHHHTTTCTTEEEEEC---CTTCGG
T ss_pred CCCEEEEEcccCCHHHHHHHH--------Hc-------CCcEEEEEECCHHHHHHHHHHhhcCCCeEEEEC---CCCCcc
Confidence 457899999999999998875 21 2358999999887666554443221 2234444 3432
Q ss_pred --ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 119 --SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 119 --~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
..++ +++|+++ |++.+.. ....+|+...+.|+|||.+++++.
T Consensus 136 ~~~~~~-~~~D~v~-----~~~~~~~----------------------------~~~~~l~~~~~~LkpgG~l~i~~~ 179 (230)
T 1fbn_A 136 EYANIV-EKVDVIY-----EDVAQPN----------------------------QAEILIKNAKWFLKKGGYGMIAIK 179 (230)
T ss_dssp GGTTTS-CCEEEEE-----ECCCSTT----------------------------HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccC-ccEEEEE-----EecCChh----------------------------HHHHHHHHHHHhCCCCcEEEEEEe
Confidence 3345 7899998 4433221 224678999999999999999843
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=98.28 E-value=9.7e-07 Score=76.67 Aligned_cols=97 Identities=10% Similarity=-0.058 Sum_probs=67.2
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CCCcceeeeccccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQSRSYYAAGVPGSFYSS 119 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~~~~~f~~gvpgsFy~~ 119 (329)
..+|+|+|||+|..+..+.. . .|..+++..|........+-+.+ ....-.+.. +++. .
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~--------~-------~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~---~d~~-~ 126 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSI--------V-------RPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQ---SRVE-E 126 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHH--------H-------CTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEE---CCTT-T
T ss_pred CCeEEEECCCCCHHHHHHHH--------H-------CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEe---cchh-h
Confidence 46999999999999998875 2 23468999999876655543332 111122333 3553 3
Q ss_pred cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
+.|++++|+++|.. ++ ++..+|+..++.|+|||++++..
T Consensus 127 ~~~~~~~D~i~~~~-------~~----------------------------~~~~~l~~~~~~L~~gG~l~~~~ 165 (207)
T 1jsx_A 127 FPSEPPFDGVISRA-------FA----------------------------SLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp SCCCSCEEEEECSC-------SS----------------------------SHHHHHHHHTTSEEEEEEEEEEE
T ss_pred CCccCCcCEEEEec-------cC----------------------------CHHHHHHHHHHhcCCCcEEEEEe
Confidence 44678999999743 11 34588999999999999999873
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.27 E-value=4.8e-07 Score=81.00 Aligned_cols=100 Identities=12% Similarity=0.082 Sum_probs=67.9
Q ss_pred eEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CC--Ccceeeecccccccc
Q 037735 44 FRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQ--SRSYYAAGVPGSFYS 118 (329)
Q Consensus 44 ~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~--~~~~f~~gvpgsFy~ 118 (329)
.+|+|+|||+|..|+.+...+ .+..+|+..|+........-+.+ .- .+--+..| ++.+
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~--------------~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~g---da~~ 120 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGL--------------ADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLS---RPLD 120 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHS--------------CTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECS---CHHH
T ss_pred CCEEEEcCCchHHHHHHHHhC--------------CCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEc---CHHH
Confidence 489999999999999887522 23468999999877665543332 21 12334554 4433
Q ss_pred cc--CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 119 SL--FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 119 ~l--fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
-+ ++++++|+|++... . .++..||+...+-|+|||++++...
T Consensus 121 ~l~~~~~~~fD~V~~d~~--------~--------------------------~~~~~~l~~~~~~LkpGG~lv~dn~ 164 (221)
T 3dr5_A 121 VMSRLANDSYQLVFGQVS--------P--------------------------MDLKALVDAAWPLLRRGGALVLADA 164 (221)
T ss_dssp HGGGSCTTCEEEEEECCC--------T--------------------------TTHHHHHHHHHHHEEEEEEEEETTT
T ss_pred HHHHhcCCCcCeEEEcCc--------H--------------------------HHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 33 34789999987531 1 1344688999999999999998443
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.3e-06 Score=78.60 Aligned_cols=101 Identities=14% Similarity=0.158 Sum_probs=70.6
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CCCc-ceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQSR-SYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~~~-~~f~~gvpgsF 116 (329)
.+..+|+|+|||+|..+..+...+ .|..+++..|+........-+.+ .-.. -.+.. +++
T Consensus 92 ~~~~~vldiG~G~G~~~~~l~~~~--------------~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~---~d~ 154 (255)
T 3mb5_A 92 SPGDFIVEAGVGSGALTLFLANIV--------------GPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKL---KDI 154 (255)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHH--------------CTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEEC---SCG
T ss_pred CCCCEEEEecCCchHHHHHHHHHh--------------CCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEE---Cch
Confidence 345799999999999999987633 34468999999876665544332 1111 23343 456
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
. ..+|++++|++++. +|.. ..+|+...+.|+|||.+++....
T Consensus 155 ~-~~~~~~~~D~v~~~--------~~~~----------------------------~~~l~~~~~~L~~gG~l~~~~~~ 196 (255)
T 3mb5_A 155 Y-EGIEEENVDHVILD--------LPQP----------------------------ERVVEHAAKALKPGGFFVAYTPC 196 (255)
T ss_dssp G-GCCCCCSEEEEEEC--------SSCG----------------------------GGGHHHHHHHEEEEEEEEEEESS
T ss_pred h-hccCCCCcCEEEEC--------CCCH----------------------------HHHHHHHHHHcCCCCEEEEEECC
Confidence 4 45888999999983 2311 25689999999999999987643
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.27 E-value=1.1e-06 Score=77.06 Aligned_cols=104 Identities=16% Similarity=0.069 Sum_probs=68.3
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--C---Ccceeeeccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--Q---SRSYYAAGVPGSFY 117 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~---~~~~f~~gvpgsFy 117 (329)
..+|+|+|||+|..++.++. + .. .+|+..|+...+...+-+++. . .+--|+.+ ++.
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~--------~-------~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~---d~~ 114 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALS--------R-------QA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQ---SSL 114 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHH--------T-------TC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECS---CHH
T ss_pred CCeEEEcCCccCHHHHHHHH--------c-------cC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEEC---CHH
Confidence 46899999999999988654 1 11 379999998877766554431 1 12234444 554
Q ss_pred cccC--CCCc-eeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHH--HHHhccCceEEEE
Q 037735 118 SSLF--PKSS-LHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTR--AQELVPGGLAALV 192 (329)
Q Consensus 118 ~~lf--p~~s-~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~r--a~eL~pGG~l~~~ 192 (329)
+-+. ++++ +|+|+++..+|+ . +...+|+.. ++-|+|||+++++
T Consensus 115 ~~~~~~~~~~~fD~I~~~~~~~~----~----------------------------~~~~~l~~~~~~~~LkpgG~l~i~ 162 (201)
T 2ift_A 115 DFLKQPQNQPHFDVVFLDPPFHF----N----------------------------LAEQAISLLCENNWLKPNALIYVE 162 (201)
T ss_dssp HHTTSCCSSCCEEEEEECCCSSS----C----------------------------HHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred HHHHhhccCCCCCEEEECCCCCC----c----------------------------cHHHHHHHHHhcCccCCCcEEEEE
Confidence 4332 4678 999998766542 1 223445544 5569999999998
Q ss_pred ecccC
Q 037735 193 MFSVP 197 (329)
Q Consensus 193 ~~g~~ 197 (329)
+....
T Consensus 163 ~~~~~ 167 (201)
T 2ift_A 163 TEKDK 167 (201)
T ss_dssp EESSS
T ss_pred ECCCC
Confidence 86544
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.26 E-value=2.5e-06 Score=76.94 Aligned_cols=114 Identities=18% Similarity=0.134 Sum_probs=70.8
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC-----------CCCcceeee
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL-----------PQSRSYYAA 110 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l-----------~~~~~~f~~ 110 (329)
+..+|||+|||+|..++.+.. . .|...|+..|........+-+.+ .-..--++.
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~--------~-------~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~ 113 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSP--------A-------FPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLR 113 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHH--------H-------STTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHH--------h-------CCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEe
Confidence 457899999999999998875 2 34468999999876654432211 111223555
Q ss_pred ccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEE
Q 037735 111 GVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAA 190 (329)
Q Consensus 111 gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~ 190 (329)
+..-++....++.+++|.++....=-|..... .+.++. -..||+..++.|+|||.|+
T Consensus 114 ~D~~~~l~~~~~~~~~d~v~~~~p~p~~k~~~----~~~r~~-------------------~~~~l~~~~~~LkpgG~l~ 170 (246)
T 2vdv_E 114 GNAMKFLPNFFEKGQLSKMFFCFPDPHFKQRK----HKARII-------------------TNTLLSEYAYVLKEGGVVY 170 (246)
T ss_dssp CCTTSCGGGTSCTTCEEEEEEESCCCC----------CSSCC-------------------CHHHHHHHHHHEEEEEEEE
T ss_pred ccHHHHHHHhccccccCEEEEECCCcccccch----hHHhhc-------------------cHHHHHHHHHHcCCCCEEE
Confidence 54334444568899999998544222211100 000000 0378999999999999999
Q ss_pred EEe
Q 037735 191 LVM 193 (329)
Q Consensus 191 ~~~ 193 (329)
+.+
T Consensus 171 ~~t 173 (246)
T 2vdv_E 171 TIT 173 (246)
T ss_dssp EEE
T ss_pred EEe
Confidence 965
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=6.6e-07 Score=75.91 Aligned_cols=100 Identities=18% Similarity=0.165 Sum_probs=67.8
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CC-Ccceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQ-SRSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~-~~~~f~~gvpgsF 116 (329)
.+..+|+|+|||+|..+..+.. . . .+++..|.........-+.+ .. ..-.+..+ ++
T Consensus 32 ~~~~~vldiG~G~G~~~~~l~~--------~-------~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~ 91 (192)
T 1l3i_A 32 GKNDVAVDVGCGTGGVTLELAG--------R-------V--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEG---DA 91 (192)
T ss_dssp CTTCEEEEESCTTSHHHHHHHT--------T-------S--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEES---CH
T ss_pred CCCCEEEEECCCCCHHHHHHHH--------h-------c--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEec---CH
Confidence 3457999999999999888764 1 1 47999998766555543322 11 11223333 45
Q ss_pred ccccCCC-CceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 117 YSSLFPK-SSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 117 y~~lfp~-~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
.+ .+|. +++|+++++..+++ +..+|+...+.|+|||.+++....
T Consensus 92 ~~-~~~~~~~~D~v~~~~~~~~----------------------------------~~~~l~~~~~~l~~gG~l~~~~~~ 136 (192)
T 1l3i_A 92 PE-ALCKIPDIDIAVVGGSGGE----------------------------------LQEILRIIKDKLKPGGRIIVTAIL 136 (192)
T ss_dssp HH-HHTTSCCEEEEEESCCTTC----------------------------------HHHHHHHHHHTEEEEEEEEEEECB
T ss_pred HH-hcccCCCCCEEEECCchHH----------------------------------HHHHHHHHHHhcCCCcEEEEEecC
Confidence 34 3444 68999998866543 247799999999999999998753
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.25 E-value=9.8e-07 Score=73.82 Aligned_cols=104 Identities=11% Similarity=0.014 Sum_probs=66.5
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--Ccceeeeccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--SRSYYAAGVPGSFYSS 119 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--~~~~f~~gvpgsFy~~ 119 (329)
+..+|+|+|||+|..+..+.+ + .+ .++..|+.......+-+.+.. .+..+..+ ++.+.
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~--------~-------~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~---d~~~~ 100 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAAS--------E-------GW--EAVLVEKDPEAVRLLKENVRRTGLGARVVAL---PVEVF 100 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHH--------T-------TC--EEEEECCCHHHHHHHHHHHHHHTCCCEEECS---CHHHH
T ss_pred CCCeEEEeCCCcCHHHHHHHH--------C-------CC--eEEEEeCCHHHHHHHHHHHHHcCCceEEEec---cHHHH
Confidence 456899999999999988864 1 22 399999987666554433221 01223433 44332
Q ss_pred c--CC--CCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHH--HHHhccCceEEEEe
Q 037735 120 L--FP--KSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTR--AQELVPGGLAALVM 193 (329)
Q Consensus 120 l--fp--~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~r--a~eL~pGG~l~~~~ 193 (329)
+ ++ ++++|+++++..+| ...+ .+++.- .+.|+|||.+++++
T Consensus 101 ~~~~~~~~~~~D~i~~~~~~~--~~~~-------------------------------~~~~~~~~~~~L~~gG~~~~~~ 147 (171)
T 1ws6_A 101 LPEAKAQGERFTVAFMAPPYA--MDLA-------------------------------ALFGELLASGLVEAGGLYVLQH 147 (171)
T ss_dssp HHHHHHTTCCEEEEEECCCTT--SCTT-------------------------------HHHHHHHHHTCEEEEEEEEEEE
T ss_pred HHhhhccCCceEEEEECCCCc--hhHH-------------------------------HHHHHHHhhcccCCCcEEEEEe
Confidence 2 11 34899999987766 2222 223333 58899999999998
Q ss_pred cccCC
Q 037735 194 FSVPD 198 (329)
Q Consensus 194 ~g~~~ 198 (329)
.....
T Consensus 148 ~~~~~ 152 (171)
T 1ws6_A 148 PKDLY 152 (171)
T ss_dssp ETTSC
T ss_pred CCccC
Confidence 77654
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=1.4e-06 Score=81.93 Aligned_cols=101 Identities=15% Similarity=0.144 Sum_probs=69.0
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CCCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~~~~~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|..+..+.... ....+|+..|+..+.....-+.+ .-...-+..+ ++.+
T Consensus 75 ~~~~VLDiGcG~G~~~~~la~~~--------------~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~---d~~~ 137 (317)
T 1dl5_A 75 KGMRVLEIGGGTGYNAAVMSRVV--------------GEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCG---DGYY 137 (317)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHH--------------CTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEES---CGGG
T ss_pred CcCEEEEecCCchHHHHHHHHhc--------------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEEC---Chhh
Confidence 45799999999999998887522 11246999999877665543332 1111234443 5644
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
.+.+.+++|+|++...+|++ + +...+.|+|||+|++++...
T Consensus 138 ~~~~~~~fD~Iv~~~~~~~~---~----------------------------------~~~~~~LkpgG~lvi~~~~~ 178 (317)
T 1dl5_A 138 GVPEFSPYDVIFVTVGVDEV---P----------------------------------ETWFTQLKEGGRVIVPINLK 178 (317)
T ss_dssp CCGGGCCEEEEEECSBBSCC---C----------------------------------HHHHHHEEEEEEEEEEBCBG
T ss_pred ccccCCCeEEEEEcCCHHHH---H----------------------------------HHHHHhcCCCcEEEEEECCC
Confidence 45567899999999999874 2 23356899999999996543
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=98.24 E-value=3.9e-06 Score=74.19 Aligned_cols=102 Identities=11% Similarity=0.119 Sum_probs=67.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC-cceeeecccccccc--
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS-RSYYAAGVPGSFYS-- 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~-~~~f~~gvpgsFy~-- 118 (329)
+..+|+|+|||+|..|..+.+.+ .|..+|+..|........+.+..... +-.|..+ ++..
T Consensus 73 ~~~~vLDlG~G~G~~~~~la~~~--------------~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~---d~~~~~ 135 (227)
T 1g8a_A 73 PGKSVLYLGIASGTTASHVSDIV--------------GWEGKIFGIEFSPRVLRELVPIVEERRNIVPILG---DATKPE 135 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHH--------------CTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEEC---CTTCGG
T ss_pred CCCEEEEEeccCCHHHHHHHHHh--------------CCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEc---cCCCcc
Confidence 45689999999999999987632 23357999999876555544333221 2234444 4433
Q ss_pred c-cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 119 S-LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 119 ~-lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
. ..+++++|++++... .| . ....+|....+.|+|||++++.+
T Consensus 136 ~~~~~~~~~D~v~~~~~------~~-~--------------------------~~~~~l~~~~~~LkpgG~l~~~~ 178 (227)
T 1g8a_A 136 EYRALVPKVDVIFEDVA------QP-T--------------------------QAKILIDNAEVYLKRGGYGMIAV 178 (227)
T ss_dssp GGTTTCCCEEEEEECCC------ST-T--------------------------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhcccCCceEEEECCC------CH-h--------------------------HHHHHHHHHHHhcCCCCEEEEEE
Confidence 1 123468999997644 11 0 11355889999999999999994
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.24 E-value=1e-06 Score=74.89 Aligned_cols=106 Identities=9% Similarity=-0.065 Sum_probs=67.9
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC----Ccceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ----SRSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~----~~~~f~~gvpgsFy 117 (329)
+..+|+|+|||+|..+..+++ .+..+|+..|+........-+.+.. .+-.+..+ ++.
T Consensus 44 ~~~~vLD~GcG~G~~~~~~~~----------------~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~---d~~ 104 (187)
T 2fhp_A 44 DGGMALDLYSGSGGLAIEAVS----------------RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKM---DAN 104 (187)
T ss_dssp SSCEEEETTCTTCHHHHHHHH----------------TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEES---CHH
T ss_pred CCCCEEEeCCccCHHHHHHHH----------------cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEEC---cHH
Confidence 456999999999999988763 1224899999987666554433311 11234443 454
Q ss_pred ccc----CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHH--HHHhccCceEEE
Q 037735 118 SSL----FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTR--AQELVPGGLAAL 191 (329)
Q Consensus 118 ~~l----fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~r--a~eL~pGG~l~~ 191 (329)
+.+ ++++++|+++++..+++- +...+++.. ++.|+|||++++
T Consensus 105 ~~~~~~~~~~~~fD~i~~~~~~~~~--------------------------------~~~~~~~~l~~~~~L~~gG~l~~ 152 (187)
T 2fhp_A 105 RALEQFYEEKLQFDLVLLDPPYAKQ--------------------------------EIVSQLEKMLERQLLTNEAVIVC 152 (187)
T ss_dssp HHHHHHHHTTCCEEEEEECCCGGGC--------------------------------CHHHHHHHHHHTTCEEEEEEEEE
T ss_pred HHHHHHHhcCCCCCEEEECCCCCch--------------------------------hHHHHHHHHHHhcccCCCCEEEE
Confidence 322 237899999998665431 111223333 678999999999
Q ss_pred EecccCC
Q 037735 192 VMFSVPD 198 (329)
Q Consensus 192 ~~~g~~~ 198 (329)
.+.....
T Consensus 153 ~~~~~~~ 159 (187)
T 2fhp_A 153 ETDKTVK 159 (187)
T ss_dssp EEETTCC
T ss_pred EeCCccc
Confidence 9876654
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=98.23 E-value=1.2e-06 Score=79.08 Aligned_cols=165 Identities=10% Similarity=-0.023 Sum_probs=86.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---C-Ccceeeeccccc-c
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---Q-SRSYYAAGVPGS-F 116 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~-~~~~f~~gvpgs-F 116 (329)
+..+|+|+|||+|..+..+.... |..+|+..|+...+....-+++. - .+--|..+.-.+ +
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~---------------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 129 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATL---------------NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLL 129 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHH---------------HCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSS
T ss_pred CCCEEEEeCCChhHHHHHHHHhC---------------CCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhh
Confidence 45699999999999998887522 22589999998777666544331 1 112355543222 2
Q ss_pred ccccCC---CCceeEEEeccceeccc-CCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEE
Q 037735 117 YSSLFP---KSSLHFVHSSYTLHWLS-KVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALV 192 (329)
Q Consensus 117 y~~lfp---~~s~dl~~Ss~alhWLs-~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~ 192 (329)
. ..++ ++++|+|+|+-..++.. +.+.. .++.+. . ..+...++...++.|+|||.+++.
T Consensus 130 ~-~~~~~~~~~~fD~i~~npp~~~~~~~~~~~-----------~~~~~~-~-----~~~~~~l~~~~~~~LkpgG~l~~~ 191 (254)
T 2h00_A 130 M-DALKEESEIIYDFCMCNPPFFANQLEAKGV-----------NSRNPR-R-----PPPSSVNTGGITEIMAEGGELEFV 191 (254)
T ss_dssp T-TTSTTCCSCCBSEEEECCCCC------------------------------------------CTTTTHHHHTHHHHH
T ss_pred h-hhhhcccCCcccEEEECCCCccCcchhccc-----------cccccc-c-----cCCHHHHhhhHHHHEecCCEEEEE
Confidence 1 1244 36899999997777643 11100 000000 0 012235567778889999987654
Q ss_pred ecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 193 MFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 193 ~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
. ..+..+.+-+...|.+..+.-..++.+++.+.+++.| |+..+...+
T Consensus 192 ~------------------~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~G-f~~v~~~~~ 238 (254)
T 2h00_A 192 K------------------RIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRIQG-VPKVTYTEF 238 (254)
T ss_dssp H------------------HHHHHHHHHGGGBSCEEEEESSTTSHHHHHHHHHHTT-CSEEEEEEE
T ss_pred H------------------HHHHHHHhcccceEEEEECCCChhHHHHHHHHHHHcC-CCceEEEEE
Confidence 2 1222232323333432211123355689999999885 876555433
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.22 E-value=4.1e-06 Score=75.04 Aligned_cols=100 Identities=11% Similarity=0.103 Sum_probs=69.4
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC----CCCcceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL----PQSRSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l----~~~~~~f~~gvpgsFy 117 (329)
+..+|+|+|||+|.++..+...+ .|..+++..|+.......+-+.+ ...+-.+.. +++.
T Consensus 96 ~~~~vLdiG~G~G~~~~~l~~~~--------------~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~---~d~~ 158 (258)
T 2pwy_A 96 PGMRVLEAGTGSGGLTLFLARAV--------------GEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHL---GKLE 158 (258)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHH--------------CTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEE---SCGG
T ss_pred CCCEEEEECCCcCHHHHHHHHHh--------------CCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEE---Cchh
Confidence 45699999999999999887632 23458999999776655544332 211222343 3564
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
+..+|++++|++++. +|.. ..+|+...+.|+|||.+++...
T Consensus 159 ~~~~~~~~~D~v~~~--------~~~~----------------------------~~~l~~~~~~L~~gG~l~~~~~ 199 (258)
T 2pwy_A 159 EAELEEAAYDGVALD--------LMEP----------------------------WKVLEKAALALKPDRFLVAYLP 199 (258)
T ss_dssp GCCCCTTCEEEEEEE--------SSCG----------------------------GGGHHHHHHHEEEEEEEEEEES
T ss_pred hcCCCCCCcCEEEEC--------CcCH----------------------------HHHHHHHHHhCCCCCEEEEEeC
Confidence 444788899999973 2311 2568999999999999999874
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.2e-06 Score=77.45 Aligned_cols=104 Identities=13% Similarity=0.044 Sum_probs=69.3
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--------CCcceeeeccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--------QSRSYYAAGVP 113 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--------~~~~~f~~gvp 113 (329)
+..+|+|+|||+|..+..+.... ... ..|..+|+..|.........-+.+. ..+..+..+
T Consensus 80 ~~~~VLdiG~G~G~~~~~la~~~--------~~~--~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-- 147 (227)
T 2pbf_A 80 PGSRAIDVGSGSGYLTVCMAIKM--------NVL--ENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHK-- 147 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHT--------TTT--TCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEEC--
T ss_pred CCCEEEEECCCCCHHHHHHHHHh--------ccc--CCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEEC--
Confidence 35799999999999998886521 100 0144689999998766555433321 112234443
Q ss_pred ccccccc----CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceE
Q 037735 114 GSFYSSL----FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLA 189 (329)
Q Consensus 114 gsFy~~l----fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l 189 (329)
++.+-+ ++.+++|+|++..+++++ + +...+.|+|||+|
T Consensus 148 -d~~~~~~~~~~~~~~fD~I~~~~~~~~~---~----------------------------------~~~~~~LkpgG~l 189 (227)
T 2pbf_A 148 -NIYQVNEEEKKELGLFDAIHVGASASEL---P----------------------------------EILVDLLAENGKL 189 (227)
T ss_dssp -CGGGCCHHHHHHHCCEEEEEECSBBSSC---C----------------------------------HHHHHHEEEEEEE
T ss_pred -ChHhcccccCccCCCcCEEEECCchHHH---H----------------------------------HHHHHhcCCCcEE
Confidence 454433 556789999999998863 2 4456889999999
Q ss_pred EEEecc
Q 037735 190 ALVMFS 195 (329)
Q Consensus 190 ~~~~~g 195 (329)
++.+..
T Consensus 190 v~~~~~ 195 (227)
T 2pbf_A 190 IIPIEE 195 (227)
T ss_dssp EEEEEE
T ss_pred EEEEcc
Confidence 999864
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.5e-06 Score=76.75 Aligned_cols=123 Identities=12% Similarity=0.011 Sum_probs=72.8
Q ss_pred CCceEEEeeeCC-CCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--Ccceeeeccccccc
Q 037735 41 PNTFRIADFGCS-TGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--SRSYYAAGVPGSFY 117 (329)
Q Consensus 41 ~~~~~IaDlGCs-tG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--~~~~f~~gvpgsFy 117 (329)
.+..+|+|+||| +|..+..+.... ..+|+..|+........-+++.. .+--+..+ ++.
T Consensus 54 ~~~~~vLDlG~G~~G~~~~~la~~~----------------~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~---d~~ 114 (230)
T 3evz_A 54 RGGEVALEIGTGHTAMMALMAEKFF----------------NCKVTATEVDEEFFEYARRNIERNNSNVRLVKS---NGG 114 (230)
T ss_dssp CSSCEEEEECCTTTCHHHHHHHHHH----------------CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEEC---SSC
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHhc----------------CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeC---Cch
Confidence 345799999999 999999886521 15899999987766655443311 12234444 321
Q ss_pred -cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 118 -SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 118 -~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
-.-+|++++|+|+++-.++|..+....+ +..-+... . ....+...||+...+-|+|||++++.+.
T Consensus 115 ~~~~~~~~~fD~I~~npp~~~~~~~~~~~--~~~~~~~~-~---------~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 180 (230)
T 3evz_A 115 IIKGVVEGTFDVIFSAPPYYDKPLGRVLT--EREAIGGG-K---------YGEEFSVKLLEEAFDHLNPGGKVALYLP 180 (230)
T ss_dssp SSTTTCCSCEEEEEECCCCC-----------------CC-S---------SSCHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred hhhhcccCceeEEEECCCCcCCccccccC--hhhhhccC-c---------cchHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 1225678999999998888765421100 00000000 0 0012346789999999999999999864
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=1.6e-06 Score=77.46 Aligned_cols=98 Identities=15% Similarity=0.131 Sum_probs=65.7
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CCCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~~~~~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|.++..+.+.. + .+|+..|.........-+.+ .-....+..+ ++ .
T Consensus 91 ~~~~vLdiG~G~G~~~~~la~~~---------------~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~---d~-~ 150 (235)
T 1jg1_A 91 PGMNILEVGTGSGWNAALISEIV---------------K-TDVYTIERIPELVEFAKRNLERAGVKNVHVILG---DG-S 150 (235)
T ss_dssp TTCCEEEECCTTSHHHHHHHHHH---------------C-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEES---CG-G
T ss_pred CCCEEEEEeCCcCHHHHHHHHHh---------------C-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEC---Cc-c
Confidence 45689999999999999887522 2 47899998766555443332 1111223443 45 3
Q ss_pred ccCCCCc-eeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 119 SLFPKSS-LHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 119 ~lfp~~s-~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
.-+|+++ +|+|+++.+++++ + ....+.|+|||+|++++...
T Consensus 151 ~~~~~~~~fD~Ii~~~~~~~~---~----------------------------------~~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 151 KGFPPKAPYDVIIVTAGAPKI---P----------------------------------EPLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp GCCGGGCCEEEEEECSBBSSC---C----------------------------------HHHHHTEEEEEEEEEEECSS
T ss_pred cCCCCCCCccEEEECCcHHHH---H----------------------------------HHHHHhcCCCcEEEEEEecC
Confidence 3355544 9999999998874 2 13457899999999998643
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=2.4e-06 Score=78.33 Aligned_cols=122 Identities=12% Similarity=0.096 Sum_probs=75.6
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CCCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~~~~~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|..+..+.. . .|..+++..|.........-++. ...+-.|..+ ++.+
T Consensus 109 ~~~~vLDlG~GsG~~~~~la~--------~-------~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~---d~~~ 170 (276)
T 2b3t_A 109 QPCRILDLGTGTGAIALALAS--------E-------RPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQS---DWFS 170 (276)
T ss_dssp SCCEEEEETCTTSHHHHHHHH--------H-------CTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECC---STTG
T ss_pred CCCEEEEecCCccHHHHHHHH--------h-------CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEc---chhh
Confidence 356899999999999988864 2 24468999999876655543332 1112234443 5544
Q ss_pred ccCCCCceeEEEeccceecccCC---CCC-CCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEE
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKV---PKV-DGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALV 192 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~---p~~-~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~ 192 (329)
.+|++++|+|+|+-..+|.... +.. .+.+..-.. .. ...-.++..+++...+-|+|||++++.
T Consensus 171 -~~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~--~~--------~~g~~~~~~~l~~~~~~LkpgG~l~~~ 237 (276)
T 2b3t_A 171 -ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALV--AA--------DSGMADIVHIIEQSRNALVSGGFLLLE 237 (276)
T ss_dssp -GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTB--CH--------HHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred -hcccCCccEEEECCCCCCccccccChhhhhcCcHHHHc--CC--------CcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 4567899999999777765430 000 000000000 00 011235578899999999999999986
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=98.19 E-value=3.6e-07 Score=80.93 Aligned_cols=108 Identities=9% Similarity=-0.011 Sum_probs=68.3
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CC-Ccceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQ-SRSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~-~~~~f~~gvpgsFy 117 (329)
++.+|+|+|||+|..|..+...+ .+..+|+..|+........-+.+ .- .+--+..|....+.
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~--------------~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l 123 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLL--------------QPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLI 123 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTS--------------CTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHG
T ss_pred CCCEEEEECCCCCHHHHHHHHhC--------------CCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHH
Confidence 45799999999999999887411 23468999999876665544332 11 12234554322222
Q ss_pred cccC---CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 118 SSLF---PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 118 ~~lf---p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
..+- +.+++|+|++....++.. +...++... +-|+|||+|++...
T Consensus 124 ~~~~~~~~~~~fD~V~~d~~~~~~~-------------------------------~~~~~~~~~-~~LkpgG~lv~~~~ 171 (221)
T 3u81_A 124 PQLKKKYDVDTLDMVFLDHWKDRYL-------------------------------PDTLLLEKC-GLLRKGTVLLADNV 171 (221)
T ss_dssp GGTTTTSCCCCCSEEEECSCGGGHH-------------------------------HHHHHHHHT-TCCCTTCEEEESCC
T ss_pred HHHHHhcCCCceEEEEEcCCcccch-------------------------------HHHHHHHhc-cccCCCeEEEEeCC
Confidence 2221 127899999876655532 223556666 99999999988543
Q ss_pred c
Q 037735 195 S 195 (329)
Q Consensus 195 g 195 (329)
.
T Consensus 172 ~ 172 (221)
T 3u81_A 172 I 172 (221)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=3.9e-06 Score=74.04 Aligned_cols=100 Identities=16% Similarity=0.123 Sum_probs=67.7
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--------Ccceeeeccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--------SRSYYAAGVP 113 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--------~~~~f~~gvp 113 (329)
+..+|+|+|||+|..|..+.... .+..+|+..|+........-+.+.. .+..+..+
T Consensus 77 ~~~~vLDiG~G~G~~~~~la~~~--------------~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-- 140 (226)
T 1i1n_A 77 EGAKALDVGSGSGILTACFARMV--------------GCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVG-- 140 (226)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHH--------------CTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEES--
T ss_pred CCCEEEEEcCCcCHHHHHHHHHh--------------CCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEEC--
Confidence 45799999999999999887522 2335899999987665554333211 12234443
Q ss_pred cccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 114 GSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 114 gsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
+......+++++|+|++...++. + +...++.|+|||+|++++
T Consensus 141 -d~~~~~~~~~~fD~i~~~~~~~~---~----------------------------------~~~~~~~LkpgG~lv~~~ 182 (226)
T 1i1n_A 141 -DGRMGYAEEAPYDAIHVGAAAPV---V----------------------------------PQALIDQLKPGGRLILPV 182 (226)
T ss_dssp -CGGGCCGGGCCEEEEEECSBBSS---C----------------------------------CHHHHHTEEEEEEEEEEE
T ss_pred -CcccCcccCCCcCEEEECCchHH---H----------------------------------HHHHHHhcCCCcEEEEEE
Confidence 44333345778999998887754 2 345678899999999987
Q ss_pred cc
Q 037735 194 FS 195 (329)
Q Consensus 194 ~g 195 (329)
..
T Consensus 183 ~~ 184 (226)
T 1i1n_A 183 GP 184 (226)
T ss_dssp SC
T ss_pred ec
Confidence 54
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.18 E-value=3.6e-06 Score=73.76 Aligned_cols=104 Identities=12% Similarity=-0.011 Sum_probs=67.6
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---Ccceeeeccccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---SRSYYAAGVPGSFYSS 119 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~~~~f~~gvpgsFy~~ 119 (329)
..+|+|+|||+|..++.++. + .. .+|+..|+...+...+-+++.. .+--|..+ ++.+-
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~--------~-------~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~---D~~~~ 115 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALS--------R-------YA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNS---NAMSF 115 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHH--------T-------TC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECS---CHHHH
T ss_pred CCeEEEeCCCcCHHHHHHHh--------c-------CC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEC---CHHHH
Confidence 46899999999999987764 1 11 2799999988777665444321 12234444 45442
Q ss_pred c-CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHH--HHhccCceEEEEeccc
Q 037735 120 L-FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRA--QELVPGGLAALVMFSV 196 (329)
Q Consensus 120 l-fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra--~eL~pGG~l~~~~~g~ 196 (329)
+ .+++++|+|++...+|+ . +...+++... +.|+|||++++++...
T Consensus 116 ~~~~~~~fD~V~~~~p~~~----~----------------------------~~~~~l~~l~~~~~L~pgG~l~i~~~~~ 163 (202)
T 2fpo_A 116 LAQKGTPHNIVFVDPPFRR----G----------------------------LLEETINLLEDNGWLADEALIYVESEVE 163 (202)
T ss_dssp HSSCCCCEEEEEECCSSST----T----------------------------THHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred HhhcCCCCCEEEECCCCCC----C----------------------------cHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 3 35679999998766553 1 1123344443 3599999999988654
Q ss_pred C
Q 037735 197 P 197 (329)
Q Consensus 197 ~ 197 (329)
.
T Consensus 164 ~ 164 (202)
T 2fpo_A 164 N 164 (202)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=8e-06 Score=75.38 Aligned_cols=126 Identities=9% Similarity=0.025 Sum_probs=84.9
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--C-Cc-ceeeecccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--Q-SR-SYYAAGVPGSFYS 118 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~-~~-~~f~~gvpgsFy~ 118 (329)
..+|+|+|||+|..|+.+.. . .+. +|+..|+.......+-+++. . .. --|..| ++.+
T Consensus 126 ~~~VLDlgcG~G~~~~~la~--------~-------~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~---D~~~ 186 (278)
T 2frn_A 126 DELVVDMFAGIGHLSLPIAV--------Y-------GKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNM---DNRD 186 (278)
T ss_dssp TCEEEETTCTTTTTHHHHHH--------H-------TCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS---CTTT
T ss_pred CCEEEEecccCCHHHHHHHH--------h-------CCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEEC---CHHH
Confidence 47899999999999998875 2 122 69999998777666544321 1 11 225554 4533
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCC
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
+.+++++|++++. +|.. ...||....+.|+|||++++..+++..
T Consensus 187 -~~~~~~fD~Vi~~--------~p~~---------------------------~~~~l~~~~~~LkpgG~l~~~~~~~~~ 230 (278)
T 2frn_A 187 -FPGENIADRILMG--------YVVR---------------------------THEFIPKALSIAKDGAIIHYHNTVPEK 230 (278)
T ss_dssp -CCCCSCEEEEEEC--------CCSS---------------------------GGGGHHHHHHHEEEEEEEEEEEEEEGG
T ss_pred -hcccCCccEEEEC--------Cchh---------------------------HHHHHHHHHHHCCCCeEEEEEEeeccc
Confidence 3347899999883 3321 135688888999999999999987542
Q ss_pred CCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEE
Q 037735 199 GIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERME 256 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e 256 (329)
. ..-...+++.+.+++.| |++..++
T Consensus 231 ~--------------------------------~~~~~~~~i~~~~~~~G-~~~~~~~ 255 (278)
T 2frn_A 231 L--------------------------------MPREPFETFKRITKEYG-YDVEKLN 255 (278)
T ss_dssp G--------------------------------TTTTTHHHHHHHHHHTT-CEEEEEE
T ss_pred c--------------------------------ccccHHHHHHHHHHHcC-CeeEEee
Confidence 1 11244677788888774 7776643
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.2e-06 Score=79.37 Aligned_cols=106 Identities=14% Similarity=0.077 Sum_probs=69.2
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CCC-cceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQS-RSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~~-~~~f~~gvpgsFy 117 (329)
++.+|+|+|||+|..|..+.. .+ ++..+|+..|+........-+.+ .-. +--+..|....+.
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~--------~~------~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l 128 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMAR--------EL------PADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSL 128 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHT--------TS------CTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHH
T ss_pred CCCEEEEecCCchHHHHHHHH--------hC------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH
Confidence 457999999999999998874 21 22468999999876665543332 211 2235554322222
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
..+...+++|+|++... . .+...+|+...+-|+|||+|++...-
T Consensus 129 ~~~~~~~~fD~V~~d~~---~-------------------------------~~~~~~l~~~~~~LkpGG~lv~~~~~ 172 (248)
T 3tfw_A 129 ESLGECPAFDLIFIDAD---K-------------------------------PNNPHYLRWALRYSRPGTLIIGDNVV 172 (248)
T ss_dssp HTCCSCCCCSEEEECSC---G-------------------------------GGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred HhcCCCCCeEEEEECCc---h-------------------------------HHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 23323458999998542 1 13346789999999999999987653
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.16 E-value=3.9e-06 Score=79.04 Aligned_cols=125 Identities=14% Similarity=0.062 Sum_probs=73.8
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|..|..+.+.. .+..+|+.+|+.......+-+++. -..-.++.+ ++..
T Consensus 118 ~g~~VLDlg~G~G~~t~~la~~~--------------~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~---D~~~ 180 (315)
T 1ixk_A 118 PGEIVADMAAAPGGKTSYLAQLM--------------RNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHS---SSLH 180 (315)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHT--------------TTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESS---CGGG
T ss_pred CCCEEEEeCCCCCHHHHHHHHHh--------------CCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEEC---Chhh
Confidence 34689999999999999987522 223589999998877766655432 112234444 4432
Q ss_pred ccCCCCceeEEEec---cceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 119 SLFPKSSLHFVHSS---YTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss---~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
-..+++++|+|++. +.+.-+.+.|.. ....++..+.+ ..+.-..+|+.-++-|+|||+|++++..
T Consensus 181 ~~~~~~~fD~Il~d~Pcsg~g~~~~~p~~-------~~~~~~~~~~~-----~~~~q~~~L~~~~~~LkpGG~lv~stcs 248 (315)
T 1ixk_A 181 IGELNVEFDKILLDAPCTGSGTIHKNPER-------KWNRTMDDIKF-----CQGLQMRLLEKGLEVLKPGGILVYSTCS 248 (315)
T ss_dssp GGGGCCCEEEEEEECCTTSTTTCC---------------CCHHHHHH-----HHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred cccccccCCEEEEeCCCCCcccccCChhH-------hhcCCHHHHHH-----HHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 22346789999973 112111122211 00111122211 2223358899999999999999998864
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.15 E-value=4.3e-06 Score=73.08 Aligned_cols=108 Identities=12% Similarity=0.037 Sum_probs=66.4
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeecccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~l 120 (329)
.+..+|+|+|||+|..|..+.+ + ..+|+..|+.... .++ .-.|+.| ++.+..
T Consensus 24 ~~g~~VLDlG~G~G~~s~~la~--------~---------~~~V~gvD~~~~~------~~~--~v~~~~~---D~~~~~ 75 (191)
T 3dou_A 24 RKGDAVIEIGSSPGGWTQVLNS--------L---------ARKIISIDLQEME------EIA--GVRFIRC---DIFKET 75 (191)
T ss_dssp CTTCEEEEESCTTCHHHHHHTT--------T---------CSEEEEEESSCCC------CCT--TCEEEEC---CTTSSS
T ss_pred CCCCEEEEEeecCCHHHHHHHH--------c---------CCcEEEEeccccc------cCC--CeEEEEc---cccCHH
Confidence 3457999999999999988864 1 2479999986531 111 2234443 453321
Q ss_pred --------CC---CCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceE
Q 037735 121 --------FP---KSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLA 189 (329)
Q Consensus 121 --------fp---~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l 189 (329)
++ .+++|+|+|..+..+.-. ... ..+ .........|+.-.+.|+|||.|
T Consensus 76 ~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~-----------------~~~-d~~--~~~~l~~~~l~~a~~~LkpGG~l 135 (191)
T 3dou_A 76 IFDDIDRALREEGIEKVDDVVSDAMAKVSGI-----------------PSR-DHA--VSYQIGQRVMEIAVRYLRNGGNV 135 (191)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEECCCCCCCSC-----------------HHH-HHH--HHHHHHHHHHHHHHHHEEEEEEE
T ss_pred HHHHHHHHhhcccCCcceEEecCCCcCCCCC-----------------ccc-CHH--HHHHHHHHHHHHHHHHccCCCEE
Confidence 22 148999999865433110 000 000 11123457788889999999999
Q ss_pred EEEeccc
Q 037735 190 ALVMFSV 196 (329)
Q Consensus 190 ~~~~~g~ 196 (329)
++.++..
T Consensus 136 v~k~~~~ 142 (191)
T 3dou_A 136 LLKQFQG 142 (191)
T ss_dssp EEEEECS
T ss_pred EEEEcCC
Confidence 9988743
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=1.8e-07 Score=83.63 Aligned_cols=100 Identities=14% Similarity=0.065 Sum_probs=69.7
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---C-Ccceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---Q-SRSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~-~~~~f~~gvpgsFy 117 (329)
+..+|+|+|||+|.++..+.+ . ..+|+..|+.......+-+.+. - .+--|..+ ++.
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~--------~---------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~---d~~ 137 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFAL--------T---------GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICG---DFL 137 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHH--------T---------TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEES---CHH
T ss_pred CCCEEEECccccCHHHHHHHH--------c---------CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEEC---ChH
Confidence 457999999999999999875 1 1589999998877666544331 1 12234544 564
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
+ +.+++++|+|+++..+||....... +...++.|+|||++++..
T Consensus 138 ~-~~~~~~~D~v~~~~~~~~~~~~~~~-------------------------------~~~~~~~L~pgG~~i~~~ 181 (241)
T 3gdh_A 138 L-LASFLKADVVFLSPPWGGPDYATAE-------------------------------TFDIRTMMSPDGFEIFRL 181 (241)
T ss_dssp H-HGGGCCCSEEEECCCCSSGGGGGSS-------------------------------SBCTTTSCSSCHHHHHHH
T ss_pred H-hcccCCCCEEEECCCcCCcchhhhH-------------------------------HHHHHhhcCCcceeHHHH
Confidence 3 3478899999999999997765422 344456789999866554
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=2.8e-06 Score=83.51 Aligned_cols=107 Identities=12% Similarity=0.096 Sum_probs=70.6
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhh----------c--CCCCccee
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFK----------S--LPQSRSYY 108 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~----------~--l~~~~~~f 108 (329)
.+..+|+|+|||+|..++.+.. . .+.-+++.-|+..+.....-+ . +...+--|
T Consensus 172 ~~gd~VLDLGCGtG~l~l~lA~--------~-------~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVef 236 (438)
T 3uwp_A 172 TDDDLFVDLGSGVGQVVLQVAA--------A-------TNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL 236 (438)
T ss_dssp CTTCEEEEESCTTSHHHHHHHH--------H-------CCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEE
T ss_pred CCCCEEEEeCCCCCHHHHHHHH--------H-------CCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEE
Confidence 3457899999999999988864 1 122259999998654332211 1 11112335
Q ss_pred eeccccccccccCCC--CceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccC
Q 037735 109 AAGVPGSFYSSLFPK--SSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPG 186 (329)
Q Consensus 109 ~~gvpgsFy~~lfp~--~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pG 186 (329)
+.| +|.+..++. .++|+|+++..++| | |...-|....+.|+||
T Consensus 237 i~G---D~~~lp~~d~~~~aDVVf~Nn~~F~----p----------------------------dl~~aL~Ei~RvLKPG 281 (438)
T 3uwp_A 237 ERG---DFLSEEWRERIANTSVIFVNNFAFG----P----------------------------EVDHQLKERFANMKEG 281 (438)
T ss_dssp EEC---CTTSHHHHHHHHTCSEEEECCTTCC----H----------------------------HHHHHHHHHHTTSCTT
T ss_pred EEC---cccCCccccccCCccEEEEcccccC----c----------------------------hHHHHHHHHHHcCCCC
Confidence 554 676655544 47999999888765 2 3445678889999999
Q ss_pred ceEEEE-ecccC
Q 037735 187 GLAALV-MFSVP 197 (329)
Q Consensus 187 G~l~~~-~~g~~ 197 (329)
|+++++ .+.++
T Consensus 282 GrIVssE~f~p~ 293 (438)
T 3uwp_A 282 GRIVSSKPFAPL 293 (438)
T ss_dssp CEEEESSCSSCT
T ss_pred cEEEEeecccCC
Confidence 999987 33443
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.7e-06 Score=76.97 Aligned_cols=101 Identities=15% Similarity=0.148 Sum_probs=67.8
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CC-Ccceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQ-SRSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~-~~~~f~~gvpgsFy 117 (329)
+..+|+|+|||+|..+..+.. . .|..+|+..|.........-+.+ .. .+--+..+ ++.
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~--------~-------~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~---d~~ 115 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQ--------A-------LPEATIVSIERDERRYEEAHKHVKALGLESRIELLFG---DAL 115 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHH--------H-------CTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS---CGG
T ss_pred CCCEEEEecCCCcHHHHHHHH--------H-------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC---CHH
Confidence 346999999999999998875 2 12368999999876655543332 11 11234443 443
Q ss_pred ccc---CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 118 SSL---FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 118 ~~l---fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
+.+ ..++++|+|++....+ ++..+|+...+.|+|||++++..+
T Consensus 116 ~~~~~~~~~~~fD~I~~~~~~~----------------------------------~~~~~l~~~~~~L~pgG~lv~~~~ 161 (233)
T 2gpy_A 116 QLGEKLELYPLFDVLFIDAAKG----------------------------------QYRRFFDMYSPMVRPGGLILSDNV 161 (233)
T ss_dssp GSHHHHTTSCCEEEEEEEGGGS----------------------------------CHHHHHHHHGGGEEEEEEEEEETT
T ss_pred HHHHhcccCCCccEEEECCCHH----------------------------------HHHHHHHHHHHHcCCCeEEEEEcC
Confidence 322 1267899999865422 345789999999999999999754
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.13 E-value=4e-06 Score=79.59 Aligned_cols=113 Identities=12% Similarity=0.025 Sum_probs=77.0
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---Ccceeeeccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---SRSYYAAGVPGSFY 117 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~~~~f~~gvpgsFy 117 (329)
+++.+|||+|||+|..+..+.+ + .|..++...|+-.......-+.++. .+--++.|....|.
T Consensus 88 p~~~rVLdIG~G~G~la~~la~--------~-------~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l 152 (317)
T 3gjy_A 88 ASKLRITHLGGGACTMARYFAD--------V-------YPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVA 152 (317)
T ss_dssp GGGCEEEEESCGGGHHHHHHHH--------H-------STTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHH
T ss_pred CCCCEEEEEECCcCHHHHHHHH--------H-------CCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHH
Confidence 3456999999999998888874 2 2446889999987666554444431 22345565544442
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
.. ++++++|+|++....+|- .|.. -.-..|++..++.|+|||+|++.+...
T Consensus 153 ~~-~~~~~fDvIi~D~~~~~~--~~~~-------------------------L~t~efl~~~~r~LkpgGvlv~~~~~~ 203 (317)
T 3gjy_A 153 ES-FTPASRDVIIRDVFAGAI--TPQN-------------------------FTTVEFFEHCHRGLAPGGLYVANCGDH 203 (317)
T ss_dssp HT-CCTTCEEEEEECCSTTSC--CCGG-------------------------GSBHHHHHHHHHHEEEEEEEEEEEEEC
T ss_pred hh-ccCCCCCEEEECCCCccc--cchh-------------------------hhHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 22 467899999998776662 2211 011478999999999999999998643
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.8e-06 Score=77.24 Aligned_cols=100 Identities=12% Similarity=0.105 Sum_probs=67.9
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CCC-cceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQS-RSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~~-~~~f~~gvpgsFy 117 (329)
+..+|+|+|||+|..|..+.. . .|..+|+..|+........-+.+ .-. +--|..| ++.
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~--------~-------~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~---d~~ 132 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFAS--------I-------SDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEG---NAL 132 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHT--------T-------CTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEES---CGG
T ss_pred CCCEEEEEeCchhHHHHHHHH--------h-------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC---CHH
Confidence 457999999999999988863 1 24468999999876655543332 211 2335554 453
Q ss_pred cccCC---CCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 118 SSLFP---KSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 118 ~~lfp---~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
+. .| ++++|+|++.. |.. ++..||+...+-|+|||+|++...
T Consensus 133 ~~-~~~~~~~~fD~V~~~~---~~~-------------------------------~~~~~l~~~~~~LkpgG~lv~d~~ 177 (232)
T 3ntv_A 133 EQ-FENVNDKVYDMIFIDA---AKA-------------------------------QSKKFFEIYTPLLKHQGLVITDNV 177 (232)
T ss_dssp GC-HHHHTTSCEEEEEEET---TSS-------------------------------SHHHHHHHHGGGEEEEEEEEEECT
T ss_pred HH-HHhhccCCccEEEEcC---cHH-------------------------------HHHHHHHHHHHhcCCCeEEEEeeC
Confidence 32 33 78999999652 211 344789999999999999988443
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=3.5e-06 Score=79.02 Aligned_cols=106 Identities=15% Similarity=0.129 Sum_probs=69.1
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC-------CCcceeeeccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP-------QSRSYYAAGVP 113 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~-------~~~~~f~~gvp 113 (329)
+++.+|||+|||+|..+..+++ . .+..+|+..|+........-+.++ ..+--++.+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~--------~-------~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~-- 156 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLR--------H-------GTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVG-- 156 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHT--------C-------TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEES--
T ss_pred CCCCeEEEEcCCCCHHHHHHHh--------C-------CCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEEC--
Confidence 4568999999999999988863 1 233589999998665554433331 112234444
Q ss_pred cccccccC--CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcH--HHHHHHHHHHhccCceE
Q 037735 114 GSFYSSLF--PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDF--QTFLNTRAQELVPGGLA 189 (329)
Q Consensus 114 gsFy~~lf--p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~--~~FL~~ra~eL~pGG~l 189 (329)
++.+-+. +++++|+|++....++. |.. .+ ..||+..++.|+|||+|
T Consensus 157 -D~~~~~~~~~~~~fDvIi~d~~~~~~---~~~--------------------------~l~~~~~l~~~~~~LkpgG~l 206 (304)
T 3bwc_A 157 -DGLAFVRQTPDNTYDVVIIDTTDPAG---PAS--------------------------KLFGEAFYKDVLRILKPDGIC 206 (304)
T ss_dssp -CHHHHHHSSCTTCEEEEEEECC--------------------------------------CCHHHHHHHHHHEEEEEEE
T ss_pred -cHHHHHHhccCCceeEEEECCCCccc---cch--------------------------hhhHHHHHHHHHHhcCCCcEE
Confidence 4433333 68899999998777652 211 11 37899999999999999
Q ss_pred EEEe
Q 037735 190 ALVM 193 (329)
Q Consensus 190 ~~~~ 193 (329)
++..
T Consensus 207 v~~~ 210 (304)
T 3bwc_A 207 CNQG 210 (304)
T ss_dssp EEEE
T ss_pred EEec
Confidence 9985
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=3.5e-06 Score=76.00 Aligned_cols=102 Identities=12% Similarity=0.049 Sum_probs=65.1
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccc--c
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSS--L 120 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~--l 120 (329)
+.+|+|+|||+|..|..+.+.+ + .. .|..+|+..|+...+....- .+. .+--|+.| +..+- +
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~----~-~~------~~~~~V~gvD~s~~~l~~a~-~~~-~~v~~~~g---D~~~~~~l 145 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLT----K-IM------GIDCQVIGIDRDLSRCQIPA-SDM-ENITLHQG---DCSDLTTF 145 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHH----H-HT------TCCCEEEEEESCCTTCCCCG-GGC-TTEEEEEC---CSSCSGGG
T ss_pred CCEEEEEeCCCCHHHHHHHHhh----h-hc------CCCCEEEEEeCChHHHHHHh-ccC-CceEEEEC---cchhHHHH
Confidence 4699999999999999887532 0 01 23468999999765533221 221 12335554 34331 1
Q ss_pred --CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHH-HhccCceEEEEec
Q 037735 121 --FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQ-ELVPGGLAALVMF 194 (329)
Q Consensus 121 --fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~-eL~pGG~l~~~~~ 194 (329)
++..++|+|++..+ | . +...+|...++ .|+|||+|++..+
T Consensus 146 ~~~~~~~fD~I~~d~~-~--~-------------------------------~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 146 EHLREMAHPLIFIDNA-H--A-------------------------------NTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp GGGSSSCSSEEEEESS-C--S-------------------------------SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred HhhccCCCCEEEECCc-h--H-------------------------------hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 23347999987654 3 1 23467888886 9999999999754
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=2e-06 Score=81.11 Aligned_cols=114 Identities=12% Similarity=0.120 Sum_probs=74.7
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--------CCcceeeecc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--------QSRSYYAAGV 112 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--------~~~~~f~~gv 112 (329)
+++.+|||+|||+|..+..+.+ + .+..+++..|+........-+.++ ..+--+..|.
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~--------~-------~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D 140 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLK--------H-------PTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDD 140 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTT--------S-------TTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESC
T ss_pred CCCCeEEEEcCCcCHHHHHHHh--------c-------CCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEch
Confidence 4568999999999999888863 1 233589999998765554433332 1223345554
Q ss_pred ccccccccCCCCceeEEEeccceec-ccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEE
Q 037735 113 PGSFYSSLFPKSSLHFVHSSYTLHW-LSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAAL 191 (329)
Q Consensus 113 pgsFy~~lfp~~s~dl~~Ss~alhW-Ls~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~ 191 (329)
...+.. .+++++|+|++....|| ++..+.. -....|++..++.|+|||+|++
T Consensus 141 ~~~~l~--~~~~~fD~Ii~d~~~~~~~~~~~~~-------------------------l~~~~~l~~~~~~LkpgG~lv~ 193 (314)
T 1uir_A 141 ARAYLE--RTEERYDVVIIDLTDPVGEDNPARL-------------------------LYTVEFYRLVKAHLNPGGVMGM 193 (314)
T ss_dssp HHHHHH--HCCCCEEEEEEECCCCBSTTCGGGG-------------------------GSSHHHHHHHHHTEEEEEEEEE
T ss_pred HHHHHH--hcCCCccEEEECCCCcccccCcchh-------------------------ccHHHHHHHHHHhcCCCcEEEE
Confidence 333311 25789999999988887 2211100 0124789999999999999999
Q ss_pred Eeccc
Q 037735 192 VMFSV 196 (329)
Q Consensus 192 ~~~g~ 196 (329)
....+
T Consensus 194 ~~~~~ 198 (314)
T 1uir_A 194 QTGMI 198 (314)
T ss_dssp EEEEE
T ss_pred EccCc
Confidence 86443
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=4.8e-06 Score=77.30 Aligned_cols=107 Identities=14% Similarity=-0.007 Sum_probs=65.6
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhh-hcCCCC----cceeeecccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLF-KSLPQS----RSYYAAGVPGSF 116 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf-~~l~~~----~~~f~~gvpgsF 116 (329)
+..+|+|+|||+|..|..+.+ . .+|+..|+.. +....- +..+.. .-.|+.. -+++
T Consensus 82 ~g~~VLDlGcGtG~~s~~la~----------------~--~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~-~~D~ 141 (276)
T 2wa2_A 82 LKGTVVDLGCGRGSWSYYAAS----------------Q--PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKS-KVDV 141 (276)
T ss_dssp CCEEEEEESCTTCHHHHHHHT----------------S--TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEEC-SCCG
T ss_pred CCCEEEEeccCCCHHHHHHHH----------------c--CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEec-cCcH
Confidence 457999999999999988864 1 2688888865 311110 011100 1233410 2355
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCc--eEEEEec
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGG--LAALVMF 194 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG--~l~~~~~ 194 (329)
.. +|++++|+|+|..+ ++... + .+ ..+. .+ .+|....+.|+||| .+++..+
T Consensus 142 ~~--l~~~~fD~Vvsd~~-~~~~~-~----------------~~-d~~~-----~l-~~L~~~~r~LkpGG~~~~v~~~~ 194 (276)
T 2wa2_A 142 TK--MEPFQADTVLCDIG-ESNPT-A----------------AV-EASR-----TL-TVLNVISRWLEYNQGCGFCVKVL 194 (276)
T ss_dssp GG--CCCCCCSEEEECCC-CCCSC-H----------------HH-HHHH-----HH-HHHHHHHHHHHHSTTCEEEEEES
T ss_pred hh--CCCCCcCEEEECCC-cCCCc-h----------------hh-hHHH-----HH-HHHHHHHHHhccCCCcEEEEEeC
Confidence 43 57889999999888 65321 1 00 0000 01 26888889999999 9999888
Q ss_pred c
Q 037735 195 S 195 (329)
Q Consensus 195 g 195 (329)
.
T Consensus 195 ~ 195 (276)
T 2wa2_A 195 N 195 (276)
T ss_dssp C
T ss_pred C
Confidence 7
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.09 E-value=1.5e-06 Score=77.10 Aligned_cols=105 Identities=15% Similarity=0.118 Sum_probs=68.7
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--------Ccceeeeccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--------SRSYYAAGVP 113 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--------~~~~f~~gvp 113 (329)
+..+|+|+|||+|..|..+.... ... ...+..+|+..|.........-+.+.. .+..+..+
T Consensus 84 ~~~~VLdiG~G~G~~~~~la~~~--------~~~-~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-- 152 (227)
T 1r18_A 84 PGARILDVGSGSGYLTACFYRYI--------KAK-GVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG-- 152 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHH--------HHS-CCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES--
T ss_pred CCCEEEEECCCccHHHHHHHHhc--------ccc-cCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEEC--
Confidence 34699999999999999887522 110 001234899999886655544333211 11234443
Q ss_pred cccccccCCC-CceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEE
Q 037735 114 GSFYSSLFPK-SSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALV 192 (329)
Q Consensus 114 gsFy~~lfp~-~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~ 192 (329)
+... .+|+ +++|+|++..+++|+ + +...+.|+|||+|++.
T Consensus 153 -d~~~-~~~~~~~fD~I~~~~~~~~~---~----------------------------------~~~~~~LkpgG~lvi~ 193 (227)
T 1r18_A 153 -DGRK-GYPPNAPYNAIHVGAAAPDT---P----------------------------------TELINQLASGGRLIVP 193 (227)
T ss_dssp -CGGG-CCGGGCSEEEEEECSCBSSC---C----------------------------------HHHHHTEEEEEEEEEE
T ss_pred -Cccc-CCCcCCCccEEEECCchHHH---H----------------------------------HHHHHHhcCCCEEEEE
Confidence 4533 4454 789999999999873 2 3456789999999999
Q ss_pred eccc
Q 037735 193 MFSV 196 (329)
Q Consensus 193 ~~g~ 196 (329)
+...
T Consensus 194 ~~~~ 197 (227)
T 1r18_A 194 VGPD 197 (227)
T ss_dssp ESCS
T ss_pred EecC
Confidence 8654
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=3.6e-06 Score=78.69 Aligned_cols=111 Identities=11% Similarity=-0.004 Sum_probs=68.1
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC-------CCcceeeeccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP-------QSRSYYAAGVP 113 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~-------~~~~~f~~gvp 113 (329)
+++.+|||+|||+|..+..+++ . .+..+|+..|+........-+.++ ..+--++.|..
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~--------~-------~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~ 153 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLK--------H-------DSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANG 153 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTT--------S-------TTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCH
T ss_pred CCCCEEEEEcCCcCHHHHHHHh--------c-------CCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcH
Confidence 4568999999999999988864 1 133589999997665544433331 11233455432
Q ss_pred cccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 114 GSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 114 gsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
..+.. .+++++|+|++...-+|....+ . -....|++..++-|+|||+|++..
T Consensus 154 ~~~l~--~~~~~fD~Ii~d~~~~~~~~~~-~-------------------------l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 154 AEYVR--KFKNEFDVIIIDSTDPTAGQGG-H-------------------------LFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp HHHGG--GCSSCEEEEEEEC------------------------------------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred HHHHh--hCCCCceEEEEcCCCcccCchh-h-------------------------hhHHHHHHHHHHhcCCCcEEEEEc
Confidence 22211 2467899999976666643111 0 012478999999999999999985
Q ss_pred c
Q 037735 194 F 194 (329)
Q Consensus 194 ~ 194 (329)
.
T Consensus 206 ~ 206 (296)
T 1inl_A 206 E 206 (296)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.08 E-value=5.1e-06 Score=76.67 Aligned_cols=107 Identities=13% Similarity=0.004 Sum_probs=64.9
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhh-hcCCCC----cceeeecccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLF-KSLPQS----RSYYAAGVPGSF 116 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf-~~l~~~----~~~f~~gvpgsF 116 (329)
+..+|+|+|||+|..|..+.+ . .+|+..|+.. +....- +..+.. .-.|+.. -+++
T Consensus 74 ~g~~VLDlGcGtG~~s~~la~----------------~--~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~-~~D~ 133 (265)
T 2oxt_A 74 LTGRVVDLGCGRGGWSYYAAS----------------R--PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKS-RVDI 133 (265)
T ss_dssp CCEEEEEESCTTSHHHHHHHT----------------S--TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEEC-SCCT
T ss_pred CCCEEEEeCcCCCHHHHHHHH----------------c--CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEec-ccCH
Confidence 457999999999999988764 1 2688888865 311100 001100 1233410 2355
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCc--eEEEEec
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGG--LAALVMF 194 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG--~l~~~~~ 194 (329)
.. +|++++|+|+|..+ +.... + .+ ... ..+ ..|....+.|+||| .+++..+
T Consensus 134 ~~--l~~~~fD~V~sd~~-~~~~~-~----------------~~-d~~-----~~l-~~L~~~~r~LkpGG~~~fv~kv~ 186 (265)
T 2oxt_A 134 HT--LPVERTDVIMCDVG-ESSPK-W----------------SV-ESE-----RTI-KILELLEKWKVKNPSADFVVKVL 186 (265)
T ss_dssp TT--SCCCCCSEEEECCC-CCCSC-H----------------HH-HHH-----HHH-HHHHHHHHHHHHCTTCEEEEEES
T ss_pred hH--CCCCCCcEEEEeCc-ccCCc-c----------------ch-hHH-----HHH-HHHHHHHHHhccCCCeEEEEEeC
Confidence 43 57889999999887 55221 1 00 000 001 26888889999999 9999888
Q ss_pred c
Q 037735 195 S 195 (329)
Q Consensus 195 g 195 (329)
.
T Consensus 187 ~ 187 (265)
T 2oxt_A 187 C 187 (265)
T ss_dssp C
T ss_pred C
Confidence 7
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=8.2e-06 Score=74.29 Aligned_cols=99 Identities=11% Similarity=0.048 Sum_probs=68.0
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CCCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~~~~~f~~gvpgsFy~ 118 (329)
...+|+|+|||+|..++.+.. . .|..+|+..|........+-+.. .-..-.++.| +..+
T Consensus 80 ~~~~vLDiG~G~G~~~i~la~--------~-------~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~---d~~~ 141 (249)
T 3g89_A 80 GPLRVLDLGTGAGFPGLPLKI--------V-------RPELELVLVDATRKKVAFVERAIEVLGLKGARALWG---RAEV 141 (249)
T ss_dssp SSCEEEEETCTTTTTHHHHHH--------H-------CTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEEC---CHHH
T ss_pred CCCEEEEEcCCCCHHHHHHHH--------H-------CCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEEC---cHHH
Confidence 467999999999999998864 2 34578999999876655543332 2112234443 4533
Q ss_pred ccC---CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 119 SLF---PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 119 ~lf---p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
-.. +++++|+|+|... . |+..+++...+-|+|||++++..
T Consensus 142 ~~~~~~~~~~fD~I~s~a~-------~----------------------------~~~~ll~~~~~~LkpgG~l~~~~ 184 (249)
T 3g89_A 142 LAREAGHREAYARAVARAV-------A----------------------------PLCVLSELLLPFLEVGGAAVAMK 184 (249)
T ss_dssp HTTSTTTTTCEEEEEEESS-------C----------------------------CHHHHHHHHGGGEEEEEEEEEEE
T ss_pred hhcccccCCCceEEEECCc-------C----------------------------CHHHHHHHHHHHcCCCeEEEEEe
Confidence 222 2489999998532 1 34578999999999999988755
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.06 E-value=1.8e-06 Score=77.29 Aligned_cols=105 Identities=18% Similarity=0.179 Sum_probs=66.8
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CCC-cceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQS-RSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~~-~~~f~~gvpgsFy 117 (329)
+..+|+|+|||+|..|..+.... .+..+|+..|.........-+.+ .-. +-.+..+....+.
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~--------------~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~ 125 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASAL--------------PEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETL 125 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHS--------------CTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHH
T ss_pred CcCEEEEEeCCCCHHHHHHHHhC--------------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHH
Confidence 35699999999999999887521 12358999998765554433332 111 1223333211111
Q ss_pred ------------cccCCC--CceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHh
Q 037735 118 ------------SSLFPK--SSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQEL 183 (329)
Q Consensus 118 ------------~~lfp~--~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL 183 (329)
..-||+ +++|+|++... . .++..+|+...+.|
T Consensus 126 ~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~---~-------------------------------~~~~~~l~~~~~~L 171 (239)
T 2hnk_A 126 QVLIDSKSAPSWASDFAFGPSSIDLFFLDAD---K-------------------------------ENYPNYYPLILKLL 171 (239)
T ss_dssp HHHHHCSSCCGGGTTTCCSTTCEEEEEECSC---G-------------------------------GGHHHHHHHHHHHE
T ss_pred HHHHhhcccccccccccCCCCCcCEEEEeCC---H-------------------------------HHHHHHHHHHHHHc
Confidence 122554 89999997632 1 13447789999999
Q ss_pred ccCceEEEEec
Q 037735 184 VPGGLAALVMF 194 (329)
Q Consensus 184 ~pGG~l~~~~~ 194 (329)
+|||++++...
T Consensus 172 ~pgG~lv~~~~ 182 (239)
T 2hnk_A 172 KPGGLLIADNV 182 (239)
T ss_dssp EEEEEEEEECS
T ss_pred CCCeEEEEEcc
Confidence 99999999764
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.06 E-value=6.8e-06 Score=75.23 Aligned_cols=99 Identities=17% Similarity=0.175 Sum_probs=68.2
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC----Ccceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ----SRSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~----~~~~f~~gvpgsFy 117 (329)
+..+|+|+|||+|..+..+.+.+ .|..+++..|+.......+-+.+.. .+-.+.. +++.
T Consensus 112 ~~~~VLDiG~G~G~~~~~la~~~--------------~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~---~d~~ 174 (277)
T 1o54_A 112 EGDRIIDTGVGSGAMCAVLARAV--------------GSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKV---RDIS 174 (277)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHT--------------TTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEEC---CCGG
T ss_pred CCCEEEEECCcCCHHHHHHHHHh--------------CCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEE---CCHH
Confidence 34699999999999999887522 2346899999977665554433211 1122333 4564
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
+ .+|++++|++++. +|.. ..+|+...+.|+|||++++...
T Consensus 175 ~-~~~~~~~D~V~~~--------~~~~----------------------------~~~l~~~~~~L~pgG~l~~~~~ 214 (277)
T 1o54_A 175 E-GFDEKDVDALFLD--------VPDP----------------------------WNYIDKCWEALKGGGRFATVCP 214 (277)
T ss_dssp G-CCSCCSEEEEEEC--------CSCG----------------------------GGTHHHHHHHEEEEEEEEEEES
T ss_pred H-cccCCccCEEEEC--------CcCH----------------------------HHHHHHHHHHcCCCCEEEEEeC
Confidence 4 3788899999983 2321 2568888999999999999873
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.05 E-value=5.8e-06 Score=78.00 Aligned_cols=100 Identities=10% Similarity=0.070 Sum_probs=62.9
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--------------CCcce
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--------------QSRSY 107 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--------------~~~~~ 107 (329)
+..+|+|+|||+|.+|..+...+ .|..+|+..|+........-+.+. ..+--
T Consensus 105 ~g~~VLDiG~G~G~~~~~la~~~--------------g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~ 170 (336)
T 2b25_A 105 PGDTVLEAGSGSGGMSLFLSKAV--------------GSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVD 170 (336)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHH--------------CTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEE
T ss_pred CCCEEEEeCCCcCHHHHHHHHHh--------------CCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceE
Confidence 45699999999999999987532 233589999997655444332221 01122
Q ss_pred eeeccccccccc--cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q 037735 108 YAAGVPGSFYSS--LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVP 185 (329)
Q Consensus 108 f~~gvpgsFy~~--lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~p 185 (329)
+.. +++.+. -++++++|+|++...-.| .+|....+.|+|
T Consensus 171 ~~~---~d~~~~~~~~~~~~fD~V~~~~~~~~------------------------------------~~l~~~~~~Lkp 211 (336)
T 2b25_A 171 FIH---KDISGATEDIKSLTFDAVALDMLNPH------------------------------------VTLPVFYPHLKH 211 (336)
T ss_dssp EEE---SCTTCCC-------EEEEEECSSSTT------------------------------------TTHHHHGGGEEE
T ss_pred EEE---CChHHcccccCCCCeeEEEECCCCHH------------------------------------HHHHHHHHhcCC
Confidence 333 355443 257788999998543222 248888999999
Q ss_pred CceEEEEec
Q 037735 186 GGLAALVMF 194 (329)
Q Consensus 186 GG~l~~~~~ 194 (329)
||.|++...
T Consensus 212 gG~lv~~~~ 220 (336)
T 2b25_A 212 GGVCAVYVV 220 (336)
T ss_dssp EEEEEEEES
T ss_pred CcEEEEEeC
Confidence 999997764
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=98.04 E-value=4e-06 Score=79.92 Aligned_cols=102 Identities=16% Similarity=0.088 Sum_probs=62.9
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CC-Ccceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQ-SRSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~-~~~~f~~gvpgsFy 117 (329)
+..+|||+|||+|..+..+.+ .+..+|+..|+.. +....-+.+ .- .+--++. +++.
T Consensus 50 ~~~~VLDiGcGtG~ls~~la~----------------~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~---~d~~ 109 (348)
T 2y1w_A 50 KDKIVLDVGCGSGILSFFAAQ----------------AGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIP---GKVE 109 (348)
T ss_dssp TTCEEEEETCTTSHHHHHHHH----------------TTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEE---SCTT
T ss_pred CcCEEEEcCCCccHHHHHHHh----------------CCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEE---cchh
Confidence 457999999999999887764 1224899999863 543332222 11 1122333 3453
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
.+-+++++|+|+|...++.+... ++..+|....+.|+|||+++++.
T Consensus 110 -~~~~~~~~D~Ivs~~~~~~~~~~-----------------------------~~~~~l~~~~~~LkpgG~li~~~ 155 (348)
T 2y1w_A 110 -EVSLPEQVDIIISEPMGYMLFNE-----------------------------RMLESYLHAKKYLKPSGNMFPTI 155 (348)
T ss_dssp -TCCCSSCEEEEEECCCBTTBTTT-----------------------------SHHHHHHHGGGGEEEEEEEESCE
T ss_pred -hCCCCCceeEEEEeCchhcCChH-----------------------------HHHHHHHHHHhhcCCCeEEEEec
Confidence 33334789999999765433211 22344555568999999998654
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=2.2e-05 Score=73.47 Aligned_cols=107 Identities=16% Similarity=0.122 Sum_probs=63.4
Q ss_pred CCceEEEeeeCCCCccc----HHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCccee-eeccccc
Q 037735 41 PNTFRIADFGCSTGPNT----FIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYY-AAGVPGS 115 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT----~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f-~~gvpgs 115 (329)
.+..+|+|+|||+|.+. ..+.. .. .+..+|+..|+... ++ +-.| +.| +
T Consensus 62 ~~g~~VLDLGcGsg~~~GpGs~~~a~--------~~------~~~~~V~gvDis~~--------v~--~v~~~i~g---D 114 (290)
T 2xyq_A 62 PYNMRVIHFGAGSDKGVAPGTAVLRQ--------WL------PTGTLLVDSDLNDF--------VS--DADSTLIG---D 114 (290)
T ss_dssp CTTCEEEEESCCCTTSBCHHHHHHHH--------HS------CTTCEEEEEESSCC--------BC--SSSEEEES---C
T ss_pred CCCCEEEEeCCCCCCCCCcHHHHHHH--------Hc------CCCCEEEEEECCCC--------CC--CCEEEEEC---c
Confidence 34578999999874443 22221 21 22468999999764 22 2234 444 5
Q ss_pred cccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 116 FYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 116 Fy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
+.+..+ ++++|+|+|+.+.+|.-..... ... -...+...|+.-.+.|+|||.|++..+.
T Consensus 115 ~~~~~~-~~~fD~Vvsn~~~~~~g~~~~d-~~~-------------------~~~l~~~~l~~a~r~LkpGG~~v~~~~~ 173 (290)
T 2xyq_A 115 CATVHT-ANKWDLIISDMYDPRTKHVTKE-NDS-------------------KEGFFTYLCGFIKQKLALGGSIAVKITE 173 (290)
T ss_dssp GGGCCC-SSCEEEEEECCCCCC---CCSC-CCC-------------------CCTHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred cccCCc-cCcccEEEEcCCcccccccccc-ccc-------------------hHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 643333 4789999998765552110000 000 0123457899999999999999997754
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.03 E-value=2.7e-06 Score=74.97 Aligned_cols=103 Identities=12% Similarity=0.041 Sum_probs=67.7
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CCC-cceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQS-RSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~~-~~~f~~gvpgsFy 117 (329)
++.+|+|+|||+|..|..+...+ ++..+|+..|.........-+.+ .-. +-.|..| ++.
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~--------------~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~---d~~ 126 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLAL--------------PKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLS---PAK 126 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTC--------------CTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES---CHH
T ss_pred CCCEEEEeCCcchHHHHHHHHhC--------------CCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeC---CHH
Confidence 35699999999999999887411 22468999999876665543332 211 2334554 342
Q ss_pred ccc--CCC----CceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEE
Q 037735 118 SSL--FPK----SSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAAL 191 (329)
Q Consensus 118 ~~l--fp~----~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~ 191 (329)
+.+ ++. +++|+|++.. |. .+...+|+...+-|+|||++++
T Consensus 127 ~~~~~~~~~~~~~~fD~v~~~~---~~-------------------------------~~~~~~l~~~~~~L~pgG~lv~ 172 (225)
T 3tr6_A 127 DTLAELIHAGQAWQYDLIYIDA---DK-------------------------------ANTDLYYEESLKLLREGGLIAV 172 (225)
T ss_dssp HHHHHHHTTTCTTCEEEEEECS---CG-------------------------------GGHHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHhhhccCCCCccEEEECC---CH-------------------------------HHHHHHHHHHHHhcCCCcEEEE
Confidence 222 111 7899998433 21 2445789999999999999998
Q ss_pred Eecc
Q 037735 192 VMFS 195 (329)
Q Consensus 192 ~~~g 195 (329)
....
T Consensus 173 ~~~~ 176 (225)
T 3tr6_A 173 DNVL 176 (225)
T ss_dssp ECSS
T ss_pred eCCC
Confidence 6553
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=5.9e-06 Score=76.50 Aligned_cols=109 Identities=14% Similarity=0.043 Sum_probs=69.5
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC-------------CCCcce
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL-------------PQSRSY 107 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l-------------~~~~~~ 107 (329)
+++.+|||+|||+|..+..+++ .+..+++..|+........-+.+ ...+--
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~----------------~~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~ 137 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQ----------------HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAK 137 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTT----------------SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEE
T ss_pred CCCCeEEEEcCCcCHHHHHHHh----------------CCCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEE
Confidence 4567999999999999988863 12358999998765544433333 111223
Q ss_pred eeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCc
Q 037735 108 YAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGG 187 (329)
Q Consensus 108 f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG 187 (329)
+..+....+... ++++|+|++....+|-. +.. -.-..|++..++.|+|||
T Consensus 138 ~~~~D~~~~l~~---~~~fD~Ii~d~~~~~~~--~~~-------------------------l~~~~~l~~~~~~L~pgG 187 (281)
T 1mjf_A 138 LTIGDGFEFIKN---NRGFDVIIADSTDPVGP--AKV-------------------------LFSEEFYRYVYDALNNPG 187 (281)
T ss_dssp EEESCHHHHHHH---CCCEEEEEEECCCCC--------------------------------TTSHHHHHHHHHHEEEEE
T ss_pred EEECchHHHhcc---cCCeeEEEECCCCCCCc--chh-------------------------hhHHHHHHHHHHhcCCCc
Confidence 455433233222 67899999977665521 100 001478999999999999
Q ss_pred eEEEEecc
Q 037735 188 LAALVMFS 195 (329)
Q Consensus 188 ~l~~~~~g 195 (329)
+|++....
T Consensus 188 ~lv~~~~~ 195 (281)
T 1mjf_A 188 IYVTQAGS 195 (281)
T ss_dssp EEEEEEEE
T ss_pred EEEEEcCC
Confidence 99998643
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.02 E-value=2.1e-06 Score=77.85 Aligned_cols=103 Identities=14% Similarity=0.173 Sum_probs=68.0
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhc---CCCC-cceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKS---LPQS-RSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~---l~~~-~~~f~~gvpgsFy 117 (329)
++.+|+|+|||+|..|+.+...+ .+..+|+..|+........-+. .+-. +--+..| ++.
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~--------------~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~g---da~ 122 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLAL--------------PDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLG---PAL 122 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTS--------------CTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEES---CHH
T ss_pred CcCEEEEeeCCcCHHHHHHHHhC--------------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc---CHH
Confidence 45799999999999999987521 2346899999976654433222 2211 2334554 443
Q ss_pred cccCC------CCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEE
Q 037735 118 SSLFP------KSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAAL 191 (329)
Q Consensus 118 ~~lfp------~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~ 191 (329)
+.+.. ++++|+|++... . .+...+|+...+-|+|||+|++
T Consensus 123 ~~l~~~~~~~~~~~fD~V~~d~~---~-------------------------------~~~~~~l~~~~~~LkpGG~lv~ 168 (242)
T 3r3h_A 123 DTLHSLLNEGGEHQFDFIFIDAD---K-------------------------------TNYLNYYELALKLVTPKGLIAI 168 (242)
T ss_dssp HHHHHHHHHHCSSCEEEEEEESC---G-------------------------------GGHHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHhhccCCCCEeEEEEcCC---h-------------------------------HHhHHHHHHHHHhcCCCeEEEE
Confidence 33311 589999987532 1 1345778999999999999999
Q ss_pred Eecc
Q 037735 192 VMFS 195 (329)
Q Consensus 192 ~~~g 195 (329)
...-
T Consensus 169 d~~~ 172 (242)
T 3r3h_A 169 DNIF 172 (242)
T ss_dssp ECSS
T ss_pred ECCc
Confidence 7554
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.02 E-value=2e-05 Score=68.24 Aligned_cols=75 Identities=9% Similarity=-0.056 Sum_probs=49.9
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccC
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLF 121 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lf 121 (329)
+..+|+|+|||+|..+..+.. .+..+|+..|+........-+.+. +--|+.+ ++.+ +
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~----------------~~~~~v~~vD~~~~~~~~a~~~~~--~~~~~~~---d~~~--~ 107 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYL----------------LGAESVTAFDIDPDAIETAKRNCG--GVNFMVA---DVSE--I 107 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHH----------------TTBSEEEEEESCHHHHHHHHHHCT--TSEEEEC---CGGG--C
T ss_pred CCCEEEEEeCCccHHHHHHHH----------------cCCCEEEEEECCHHHHHHHHHhcC--CCEEEEC---cHHH--C
Confidence 457999999999999888764 111369999998777666555544 2234444 4533 3
Q ss_pred CCCceeEEEeccceecccC
Q 037735 122 PKSSLHFVHSSYTLHWLSK 140 (329)
Q Consensus 122 p~~s~dl~~Ss~alhWLs~ 140 (329)
| +++|+|+++-.+||+.+
T Consensus 108 ~-~~~D~v~~~~p~~~~~~ 125 (200)
T 1ne2_A 108 S-GKYDTWIMNPPFGSVVK 125 (200)
T ss_dssp C-CCEEEEEECCCC-----
T ss_pred C-CCeeEEEECCCchhccC
Confidence 4 78999999999999764
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.01 E-value=7.2e-06 Score=78.06 Aligned_cols=113 Identities=13% Similarity=0.057 Sum_probs=75.5
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---Ccceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---SRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~~~~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|..++.+.... .|...++..|+........-+++.. ..--|..+ ++.+
T Consensus 203 ~~~~vLD~gcGsG~~~ie~a~~~--------------~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~---D~~~ 265 (354)
T 3tma_A 203 PGMRVLDPFTGSGTIALEAASTL--------------GPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRA---DARH 265 (354)
T ss_dssp TTCCEEESSCTTSHHHHHHHHHH--------------CTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEEC---CGGG
T ss_pred CCCEEEeCCCCcCHHHHHHHHhh--------------CCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeC---Chhh
Confidence 45689999999999988886521 1346899999987776665444321 12234443 5655
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
-..|.+++|+++++--..|... ... ........+++...+.|+|||.+++.+.
T Consensus 266 ~~~~~~~~D~Ii~npPyg~r~~---------------~~~--------~~~~~~~~~~~~~~~~LkpgG~l~i~t~ 318 (354)
T 3tma_A 266 LPRFFPEVDRILANPPHGLRLG---------------RKE--------GLFHLYWDFLRGALALLPPGGRVALLTL 318 (354)
T ss_dssp GGGTCCCCSEEEECCCSCC-------------------CH--------HHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred CccccCCCCEEEECCCCcCccC---------------Ccc--------cHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 5566778899999765554211 011 1223446889999999999999999875
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=4.7e-06 Score=78.44 Aligned_cols=106 Identities=10% Similarity=0.060 Sum_probs=63.3
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCC----CcchHHhh-hhcCCCCcceeeecccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDH----SDNDFNTL-FKSLPQSRSYYAAGVPGSF 116 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDL----p~ndfn~l-f~~l~~~~~~f~~gvpgsF 116 (329)
+..+|+|+|||+|..|..+.+. -+|+..|+ ..++...+ .+.+......|..|+ ++
T Consensus 82 ~g~~VLDlGcG~G~~s~~la~~------------------~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--D~ 141 (305)
T 2p41_A 82 PEGKVVDLGCGRGGWSYYCGGL------------------KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGV--DV 141 (305)
T ss_dssp CCEEEEEETCTTSHHHHHHHTS------------------TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSC--CT
T ss_pred CCCEEEEEcCCCCHHHHHHHhc------------------CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEecc--cc
Confidence 3479999999999999888741 14677776 22221100 011100112344431 44
Q ss_pred ccccCCCCceeEEEecccee---cccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 117 YSSLFPKSSLHFVHSSYTLH---WLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alh---WLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
.. +|++++|+|+|..+.+ |..+.+ ..+ ..|....+.|+|||.|++.+
T Consensus 142 ~~--l~~~~fD~V~sd~~~~~g~~~~d~~---------------------------~~l-~~L~~~~~~LkpGG~~v~kv 191 (305)
T 2p41_A 142 FF--IPPERCDTLLCDIGESSPNPTVEAG---------------------------RTL-RVLNLVENWLSNNTQFCVKV 191 (305)
T ss_dssp TT--SCCCCCSEEEECCCCCCSSHHHHHH---------------------------HHH-HHHHHHHHHCCTTCEEEEEE
T ss_pred cc--CCcCCCCEEEECCccccCcchhhHH---------------------------HHH-HHHHHHHHHhCCCCEEEEEe
Confidence 32 3678999999988764 321100 011 36788889999999999988
Q ss_pred cccC
Q 037735 194 FSVP 197 (329)
Q Consensus 194 ~g~~ 197 (329)
+...
T Consensus 192 ~~~~ 195 (305)
T 2p41_A 192 LNPY 195 (305)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7653
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=2.7e-06 Score=74.93 Aligned_cols=106 Identities=10% Similarity=0.064 Sum_probs=67.2
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CCC-cceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQS-RSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~~-~~~f~~gvpgsFy 117 (329)
++.+|+|+|||+|..|..+.. .+ ++..+|+..|+........-+.+ .-. +--+..|....+.
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~--------~~------~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 123 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLAR--------GL------SSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSL 123 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHT--------TC------CSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHH
T ss_pred CCCEEEEecCCccHHHHHHHH--------hC------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH
Confidence 457999999999999998874 21 22468999999876655543332 211 1234444322221
Q ss_pred cccCC--CCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 118 SSLFP--KSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 118 ~~lfp--~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
..+.. .+++|+|++....+ +...+|+...+.|+|||++++....
T Consensus 124 ~~~~~~~~~~fD~v~~d~~~~----------------------------------~~~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 124 QQIENEKYEPFDFIFIDADKQ----------------------------------NNPAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp HHHHHTTCCCCSEEEECSCGG----------------------------------GHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred HHHHhcCCCCcCEEEEcCCcH----------------------------------HHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 11111 16799998754311 3347789999999999999886553
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.4e-05 Score=77.51 Aligned_cols=100 Identities=17% Similarity=0.181 Sum_probs=62.4
Q ss_pred eEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC--C--CCcceeeeccccccccc
Q 037735 44 FRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL--P--QSRSYYAAGVPGSFYSS 119 (329)
Q Consensus 44 ~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l--~--~~~~~f~~gvpgsFy~~ 119 (329)
-+|||+|||||.+|+...+ . -. -+|+..|.. ++....-+.+ . ..+-.++.| +. +.
T Consensus 85 k~VLDvG~GtGiLs~~Aa~--------a-------GA-~~V~ave~s-~~~~~a~~~~~~n~~~~~i~~i~~---~~-~~ 143 (376)
T 4hc4_A 85 KTVLDVGAGTGILSIFCAQ--------A-------GA-RRVYAVEAS-AIWQQAREVVRFNGLEDRVHVLPG---PV-ET 143 (376)
T ss_dssp CEEEEETCTTSHHHHHHHH--------T-------TC-SEEEEEECS-TTHHHHHHHHHHTTCTTTEEEEES---CT-TT
T ss_pred CEEEEeCCCccHHHHHHHH--------h-------CC-CEEEEEeCh-HHHHHHHHHHHHcCCCceEEEEee---ee-ee
Confidence 5799999999998877653 1 11 379999965 3443322211 1 112234443 45 44
Q ss_pred cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEE
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALV 192 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~ 192 (329)
+-.+..+|+++|-+.-..|-. +..+..++.+|.+-|+|||.|+..
T Consensus 144 ~~lpe~~DvivsE~~~~~l~~----------------------------e~~l~~~l~a~~r~Lkp~G~~iP~ 188 (376)
T 4hc4_A 144 VELPEQVDAIVSEWMGYGLLH----------------------------ESMLSSVLHARTKWLKEGGLLLPA 188 (376)
T ss_dssp CCCSSCEEEEECCCCBTTBTT----------------------------TCSHHHHHHHHHHHEEEEEEEESC
T ss_pred ecCCccccEEEeecccccccc----------------------------cchhhhHHHHHHhhCCCCceECCc
Confidence 434478999999433222211 225668899999999999998743
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=97.98 E-value=4.2e-06 Score=82.61 Aligned_cols=103 Identities=13% Similarity=-0.003 Sum_probs=66.5
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhh-------hhc---CC--CCccee
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTL-------FKS---LP--QSRSYY 108 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~l-------f~~---l~--~~~~~f 108 (329)
....+|+|+|||+|..+..+.... +..+|+.-|+........ -+. .. ..+--+
T Consensus 241 ~~g~~VLDLGCGsG~la~~LA~~~---------------g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~ 305 (433)
T 1u2z_A 241 KKGDTFMDLGSGVGNCVVQAALEC---------------GCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEF 305 (433)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHH---------------CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEE
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHC---------------CCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEE
Confidence 345799999999999999987522 123799999987654433 222 11 111223
Q ss_pred eeccccccccc-cC--CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q 037735 109 AAGVPGSFYSS-LF--PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVP 185 (329)
Q Consensus 109 ~~gvpgsFy~~-lf--p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~p 185 (329)
+.| .++... .+ +.+++|+|+++.++++ | |+...|+...+.|+|
T Consensus 306 i~g--D~~~~~~~~~~~~~~FDvIvvn~~l~~----~----------------------------d~~~~L~el~r~LKp 351 (433)
T 1u2z_A 306 SLK--KSFVDNNRVAELIPQCDVILVNNFLFD----E----------------------------DLNKKVEKILQTAKV 351 (433)
T ss_dssp EES--SCSTTCHHHHHHGGGCSEEEECCTTCC----H----------------------------HHHHHHHHHHTTCCT
T ss_pred EEc--CccccccccccccCCCCEEEEeCcccc----c----------------------------cHHHHHHHHHHhCCC
Confidence 433 133221 11 3478999999877632 2 444678999999999
Q ss_pred CceEEEE
Q 037735 186 GGLAALV 192 (329)
Q Consensus 186 GG~l~~~ 192 (329)
||+|++.
T Consensus 352 GG~lVi~ 358 (433)
T 1u2z_A 352 GCKIISL 358 (433)
T ss_dssp TCEEEES
T ss_pred CeEEEEe
Confidence 9999987
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=6.9e-06 Score=76.19 Aligned_cols=108 Identities=9% Similarity=-0.002 Sum_probs=71.7
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC-------Ccceeeeccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ-------SRSYYAAGVP 113 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~-------~~~~f~~gvp 113 (329)
+++.+|+|+|||+|..+..+.+ . .|..+++..|+........-+.++. .+--++.+..
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~--------~-------~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~ 141 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCK--------Y-------KSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDA 141 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTT--------C-------TTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCH
T ss_pred CCCCeEEEEeCCcCHHHHHHHH--------c-------CCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECCh
Confidence 4568999999999999888863 1 2335899999976655544444432 1223455433
Q ss_pred cccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcH--HHHHHHHHHHhccCceEEE
Q 037735 114 GSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDF--QTFLNTRAQELVPGGLAAL 191 (329)
Q Consensus 114 gsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~--~~FL~~ra~eL~pGG~l~~ 191 (329)
..+.. ..++++|+|++....+|. |. .++ ..|++..++.|+|||+|++
T Consensus 142 ~~~l~--~~~~~fD~Ii~d~~~~~~---~~--------------------------~~l~~~~~l~~~~~~L~pgG~lv~ 190 (283)
T 2i7c_A 142 SKFLE--NVTNTYDVIIVDSSDPIG---PA--------------------------ETLFNQNFYEKIYNALKPNGYCVA 190 (283)
T ss_dssp HHHHH--HCCSCEEEEEEECCCTTT---GG--------------------------GGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHH--hCCCCceEEEEcCCCCCC---cc--------------------------hhhhHHHHHHHHHHhcCCCcEEEE
Confidence 22211 136889999997665552 11 122 4889999999999999998
Q ss_pred Eec
Q 037735 192 VMF 194 (329)
Q Consensus 192 ~~~ 194 (329)
...
T Consensus 191 ~~~ 193 (283)
T 2i7c_A 191 QCE 193 (283)
T ss_dssp ECC
T ss_pred ECC
Confidence 853
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=3.7e-06 Score=76.35 Aligned_cols=101 Identities=12% Similarity=0.193 Sum_probs=67.0
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CC-Ccceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQ-SRSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~-~~~~f~~gvpgsFy 117 (329)
++.+|+|+|||+|..|+.+...+ ++..+|+..|.........-+.+ .- .+--+..| +..
T Consensus 79 ~~~~VLeiG~G~G~~~~~la~~~--------------~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~g---da~ 141 (247)
T 1sui_A 79 NAKNTMEIGVYTGYSLLATALAI--------------PEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREG---PAL 141 (247)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHS--------------CTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEES---CHH
T ss_pred CcCEEEEeCCCcCHHHHHHHHhC--------------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEEC---CHH
Confidence 45799999999999999887522 22468999999876655443332 11 11234444 343
Q ss_pred ccc--C-----CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEE
Q 037735 118 SSL--F-----PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAA 190 (329)
Q Consensus 118 ~~l--f-----p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~ 190 (329)
+.+ + +++++|++++... . .+...+|+...+-|+|||+++
T Consensus 142 ~~l~~l~~~~~~~~~fD~V~~d~~---~-------------------------------~~~~~~l~~~~~~LkpGG~lv 187 (247)
T 1sui_A 142 PVLDEMIKDEKNHGSYDFIFVDAD---K-------------------------------DNYLNYHKRLIDLVKVGGVIG 187 (247)
T ss_dssp HHHHHHHHSGGGTTCBSEEEECSC---S-------------------------------TTHHHHHHHHHHHBCTTCCEE
T ss_pred HHHHHHHhccCCCCCEEEEEEcCc---h-------------------------------HHHHHHHHHHHHhCCCCeEEE
Confidence 322 1 2688999997532 1 133477888899999999999
Q ss_pred EEe
Q 037735 191 LVM 193 (329)
Q Consensus 191 ~~~ 193 (329)
+..
T Consensus 188 ~d~ 190 (247)
T 1sui_A 188 YDN 190 (247)
T ss_dssp EEC
T ss_pred Eec
Confidence 865
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=97.96 E-value=5.3e-06 Score=79.11 Aligned_cols=108 Identities=17% Similarity=0.096 Sum_probs=71.3
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC-------CCcceeeeccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP-------QSRSYYAAGVP 113 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~-------~~~~~f~~gvp 113 (329)
+++.+|||+|||+|..+..+.+ . .|..+|+..|+........-+.++ ..+--+..|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~--------~-------~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~-- 181 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVAR--------H-------ASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIG-- 181 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTT--------C-------TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEES--
T ss_pred CCCCEEEEECCCccHHHHHHHH--------c-------CCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEC--
Confidence 4568999999999999988863 1 233589999998766555443332 112334554
Q ss_pred ccccccc--CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEE
Q 037735 114 GSFYSSL--FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAAL 191 (329)
Q Consensus 114 gsFy~~l--fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~ 191 (329)
+..+-+ ++++++|+|++...-+|.. + . .-....|++...+.|+|||+|++
T Consensus 182 -D~~~~l~~~~~~~fDlIi~d~~~p~~~--~-~------------------------~l~~~~~l~~~~~~LkpgG~lv~ 233 (334)
T 1xj5_A 182 -DGVAFLKNAAEGSYDAVIVDSSDPIGP--A-K------------------------ELFEKPFFQSVARALRPGGVVCT 233 (334)
T ss_dssp -CHHHHHHTSCTTCEEEEEECCCCTTSG--G-G------------------------GGGSHHHHHHHHHHEEEEEEEEE
T ss_pred -CHHHHHHhccCCCccEEEECCCCccCc--c-h------------------------hhhHHHHHHHHHHhcCCCcEEEE
Confidence 343322 3568999999976544410 0 0 00124889999999999999999
Q ss_pred Ee
Q 037735 192 VM 193 (329)
Q Consensus 192 ~~ 193 (329)
..
T Consensus 234 ~~ 235 (334)
T 1xj5_A 234 QA 235 (334)
T ss_dssp EC
T ss_pred ec
Confidence 74
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=8.7e-06 Score=76.49 Aligned_cols=110 Identities=13% Similarity=0.057 Sum_probs=69.4
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC-------CCcceeeeccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP-------QSRSYYAAGVP 113 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~-------~~~~~f~~gvp 113 (329)
+++.+|||+|||+|..++.+.+ + .|..+++..|+........-+.++ ..+--++.+.
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~--------~-------~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~D- 157 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVK--------H-------PSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGD- 157 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTT--------C-------TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESC-
T ss_pred CCCCEEEEECCCchHHHHHHHH--------c-------CCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECc-
Confidence 4568999999999999988863 1 233589999997666554433332 1122344443
Q ss_pred ccccccc-CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEE
Q 037735 114 GSFYSSL-FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALV 192 (329)
Q Consensus 114 gsFy~~l-fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~ 192 (329)
..+-+ .+++++|+|++....+|- |.. .-....|++...+.|+|||+|++.
T Consensus 158 --a~~~l~~~~~~fD~Ii~d~~~~~~---~~~------------------------~l~~~~~l~~~~~~LkpgG~lv~~ 208 (304)
T 2o07_A 158 --GFEFMKQNQDAFDVIITDSSDPMG---PAE------------------------SLFKESYYQLMKTALKEDGVLCCQ 208 (304)
T ss_dssp --HHHHHHTCSSCEEEEEEECC--------------------------------------CHHHHHHHHHEEEEEEEEEE
T ss_pred --HHHHHhhCCCCceEEEECCCCCCC---cch------------------------hhhHHHHHHHHHhccCCCeEEEEe
Confidence 33222 356899999997766652 110 001137899999999999999997
Q ss_pred ecc
Q 037735 193 MFS 195 (329)
Q Consensus 193 ~~g 195 (329)
...
T Consensus 209 ~~~ 211 (304)
T 2o07_A 209 GEC 211 (304)
T ss_dssp EEC
T ss_pred cCC
Confidence 743
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=97.94 E-value=9.1e-06 Score=76.82 Aligned_cols=108 Identities=14% Similarity=0.115 Sum_probs=67.8
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC-------Ccceeeeccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ-------SRSYYAAGVP 113 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~-------~~~~f~~gvp 113 (329)
+++.+|||+|||+|..+..+++ . .|..+|+..|+........-+.++. .+--+..+
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~--------~-------~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~-- 169 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLK--------H-------ESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCG-- 169 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTT--------C-------TTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECS--
T ss_pred CCCCEEEEEcCCcCHHHHHHHH--------c-------CCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEC--
Confidence 4567999999999999988863 1 2346899999987665554444432 12234444
Q ss_pred ccccccc-CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEE
Q 037735 114 GSFYSSL-FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALV 192 (329)
Q Consensus 114 gsFy~~l-fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~ 192 (329)
+..+-+ .+++++|+|++...-+|- |.. ..|. ..|++...+.|+|||+|++.
T Consensus 170 -D~~~~l~~~~~~fD~Ii~d~~~~~~---~~~-----------------~l~t-------~~~l~~~~~~LkpgG~lv~~ 221 (314)
T 2b2c_A 170 -DGFEFLKNHKNEFDVIITDSSDPVG---PAE-----------------SLFG-------QSYYELLRDALKEDGILSSQ 221 (314)
T ss_dssp -CHHHHHHHCTTCEEEEEECCC----------------------------------------HHHHHHHHEEEEEEEEEE
T ss_pred -hHHHHHHhcCCCceEEEEcCCCCCC---cch-----------------hhhH-------HHHHHHHHhhcCCCeEEEEE
Confidence 333222 267899999997654441 100 0010 47899999999999999997
Q ss_pred e
Q 037735 193 M 193 (329)
Q Consensus 193 ~ 193 (329)
.
T Consensus 222 ~ 222 (314)
T 2b2c_A 222 G 222 (314)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=97.93 E-value=1.1e-05 Score=74.11 Aligned_cols=122 Identities=11% Similarity=-0.051 Sum_probs=73.2
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|..|..+.+.. ....+|+.+|+.......+-+++. -..-.+..+ ++..
T Consensus 83 ~g~~VLDlgaG~G~~t~~la~~~--------------~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~---D~~~ 145 (274)
T 3ajd_A 83 EDDFILDMCAAPGGKTTHLAQLM--------------KNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINA---DMRK 145 (274)
T ss_dssp TTCEEEETTCTTCHHHHHHHHHT--------------TTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEES---CHHH
T ss_pred CcCEEEEeCCCccHHHHHHHHHc--------------CCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeC---ChHh
Confidence 34689999999999999887522 112589999998777666544432 112223443 4432
Q ss_pred ccC----CCCceeEEEecc---ceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEE
Q 037735 119 SLF----PKSSLHFVHSSY---TLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAAL 191 (329)
Q Consensus 119 ~lf----p~~s~dl~~Ss~---alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~ 191 (329)
-.. +++++|+|++.. .+..+.+.| .....-......+...+|+.-++.|+|||+|++
T Consensus 146 ~~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p----------------~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~ 209 (274)
T 3ajd_A 146 YKDYLLKNEIFFDKILLDAPCSGNIIKDKNR----------------NVSEEDIKYCSLRQKELIDIGIDLLKKDGELVY 209 (274)
T ss_dssp HHHHHHHTTCCEEEEEEEECCC----------------------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEE
T ss_pred cchhhhhccccCCEEEEcCCCCCCcccccCC----------------CCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEE
Confidence 222 367899998741 222222111 001111223345667899999999999999999
Q ss_pred Eeccc
Q 037735 192 VMFSV 196 (329)
Q Consensus 192 ~~~g~ 196 (329)
++...
T Consensus 210 stcs~ 214 (274)
T 3ajd_A 210 STCSM 214 (274)
T ss_dssp EESCC
T ss_pred EECCC
Confidence 98654
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=97.93 E-value=1.9e-05 Score=72.90 Aligned_cols=110 Identities=12% Similarity=-0.061 Sum_probs=72.1
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC-------CCCcceeeeccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL-------PQSRSYYAAGVP 113 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l-------~~~~~~f~~gvp 113 (329)
+++.+|||+|||+|..+..+++ + .+..+|...|+-.......-+.+ ...+--++.|..
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~--------~-------~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~ 138 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILK--------H-------PSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDG 138 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTT--------C-------TTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCS
T ss_pred CCCCEEEEECCchHHHHHHHHh--------C-------CCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcH
Confidence 4578999999999999888763 1 23358999999766555443333 122334555543
Q ss_pred cccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 114 GSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 114 gsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
..+.. .+++++|+|++....+|.. +..-+ -..|++...+.|+|||+|++..
T Consensus 139 ~~~l~--~~~~~fD~Ii~d~~~~~~~--~~~l~-------------------------~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 139 FMHIA--KSENQYDVIMVDSTEPVGP--AVNLF-------------------------TKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp HHHHH--TCCSCEEEEEESCSSCCSC--CCCCS-------------------------TTHHHHHHHHHEEEEEEEEEEC
T ss_pred HHHHh--hCCCCeeEEEECCCCCCCc--chhhh-------------------------HHHHHHHHHHhcCCCcEEEEEc
Confidence 33322 2468999999987766631 11100 0278999999999999999986
Q ss_pred c
Q 037735 194 F 194 (329)
Q Consensus 194 ~ 194 (329)
.
T Consensus 190 ~ 190 (275)
T 1iy9_A 190 D 190 (275)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.93 E-value=2e-06 Score=79.93 Aligned_cols=99 Identities=14% Similarity=0.094 Sum_probs=61.1
Q ss_pred chHHHhHHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecC
Q 037735 9 SYASNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFND 88 (329)
Q Consensus 9 sY~~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nD 88 (329)
+|.+|-..+..++..+...+. ..+..+|+|+|||+|.+|..+.+ + . .+|+..|
T Consensus 5 ~~gq~fl~d~~i~~~i~~~~~----------~~~~~~VLDiG~G~G~lt~~L~~--------~-------~--~~v~~vD 57 (285)
T 1zq9_A 5 GIGQHILKNPLIINSIIDKAA----------LRPTDVVLEVGPGTGNMTVKLLE--------K-------A--KKVVACE 57 (285)
T ss_dssp ---CCEECCHHHHHHHHHHTC----------CCTTCEEEEECCTTSTTHHHHHH--------H-------S--SEEEEEE
T ss_pred CCCcCccCCHHHHHHHHHhcC----------CCCCCEEEEEcCcccHHHHHHHh--------h-------C--CEEEEEE
Confidence 444444444555554443322 23457899999999999999875 1 1 3799999
Q ss_pred CCcchHHhhhhcCCC----CcceeeeccccccccccCCCCceeEEEeccceeccc
Q 037735 89 HSDNDFNTLFKSLPQ----SRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLS 139 (329)
Q Consensus 89 Lp~ndfn~lf~~l~~----~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs 139 (329)
+...+...+-+.+.. .+-.++.| ++.+--+| ++|+++++...||.+
T Consensus 58 ~~~~~~~~a~~~~~~~~~~~~v~~~~~---D~~~~~~~--~fD~vv~nlpy~~~~ 107 (285)
T 1zq9_A 58 LDPRLVAELHKRVQGTPVASKLQVLVG---DVLKTDLP--FFDTCVANLPYQISS 107 (285)
T ss_dssp SCHHHHHHHHHHHTTSTTGGGEEEEES---CTTTSCCC--CCSEEEEECCGGGHH
T ss_pred CCHHHHHHHHHHHHhcCCCCceEEEEc---ceecccch--hhcEEEEecCcccch
Confidence 987776655444321 11234443 56443344 799999999988865
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.4e-05 Score=78.84 Aligned_cols=127 Identities=12% Similarity=0.034 Sum_probs=74.4
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CCCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~~~~~f~~gvpgsFy~ 118 (329)
...+|+|+|||+|..|..+...+ ....+|+.+|........+-+++ .-..-.+..+ ++..
T Consensus 259 ~g~~VLDlgaG~G~~t~~la~~~--------------~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~---D~~~ 321 (450)
T 2yxl_A 259 PGETVVDLAAAPGGKTTHLAELM--------------KNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVK---DARK 321 (450)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHT--------------TTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECS---CTTC
T ss_pred CcCEEEEeCCCccHHHHHHHHHc--------------CCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEc---Chhh
Confidence 34689999999999999987522 11258999999887766654443 2112234444 3422
Q ss_pred cc--CCCCceeEEEe---ccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 119 SL--FPKSSLHFVHS---SYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 119 ~l--fp~~s~dl~~S---s~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
-. ++++++|+|++ .+.+.-+.+.|...|. .++..+.. ....-..+|..-++-|+|||.|++++
T Consensus 322 ~~~~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~-------~~~~~~~~-----l~~~q~~iL~~a~~~LkpGG~lvy~t 389 (450)
T 2yxl_A 322 APEIIGEEVADKVLLDAPCTSSGTIGKNPELRWR-------LREDKINE-----MSQLQRELLESAARLVKPGGRLLYTT 389 (450)
T ss_dssp CSSSSCSSCEEEEEEECCCCCGGGTTTSTTHHHH-------CCTTSHHH-----HHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cchhhccCCCCEEEEcCCCCCCeeeccChhhhhh-------CCHHHHHH-----HHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 22 55688999996 2233333333321010 01111111 11111478999999999999999998
Q ss_pred cccC
Q 037735 194 FSVP 197 (329)
Q Consensus 194 ~g~~ 197 (329)
+...
T Consensus 390 cs~~ 393 (450)
T 2yxl_A 390 CSIF 393 (450)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7543
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=97.89 E-value=4.7e-06 Score=74.99 Aligned_cols=105 Identities=11% Similarity=0.106 Sum_probs=68.0
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CCC-cceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQS-RSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~~-~~~f~~gvpgsFy 117 (329)
++.+|+|+|||+|..|..+...+ ++..+++..|.........-+.+ +-. +--+..|....+.
T Consensus 70 ~~~~VLeiG~G~G~~~~~la~~~--------------~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l 135 (237)
T 3c3y_A 70 NAKKTIEVGVFTGYSLLLTALSI--------------PDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLAL 135 (237)
T ss_dssp TCCEEEEECCTTSHHHHHHHHHS--------------CTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHhC--------------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH
Confidence 45799999999999999987522 22468999999766555443332 111 1234444322221
Q ss_pred cccC----CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 118 SSLF----PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 118 ~~lf----p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
..+. +++++|++++.. |. .+...||+...+-|+|||++++..
T Consensus 136 ~~l~~~~~~~~~fD~I~~d~---~~-------------------------------~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 136 DNLLQGQESEGSYDFGFVDA---DK-------------------------------PNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp HHHHHSTTCTTCEEEEEECS---CG-------------------------------GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred HHHHhccCCCCCcCEEEECC---ch-------------------------------HHHHHHHHHHHHhcCCCeEEEEec
Confidence 2221 367899999742 21 134578889999999999999865
Q ss_pred c
Q 037735 194 F 194 (329)
Q Consensus 194 ~ 194 (329)
.
T Consensus 182 ~ 182 (237)
T 3c3y_A 182 T 182 (237)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=97.88 E-value=2.4e-05 Score=76.68 Aligned_cols=125 Identities=16% Similarity=0.138 Sum_probs=77.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--Ccceeeeccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--SRSYYAAGVPGSFYSS 119 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--~~~~f~~gvpgsFy~~ 119 (329)
+..+|+|+|||+|..|..+.+.. +..+|+.+|........+-+++.. ....+..+ ++..-
T Consensus 246 ~g~~VLDlgaG~G~~t~~la~~~---------------~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~---D~~~~ 307 (429)
T 1sqg_A 246 NGEHILDLCAAPGGKTTHILEVA---------------PEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQG---DGRYP 307 (429)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHC---------------TTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEEC---CTTCT
T ss_pred CcCeEEEECCCchHHHHHHHHHc---------------CCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeC---chhhc
Confidence 34689999999999999987521 225899999988777666544321 11234444 34222
Q ss_pred c--CCCCceeEEEe---ccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 120 L--FPKSSLHFVHS---SYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 120 l--fp~~s~dl~~S---s~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
. ++++++|+|++ ++....+.+.|...| ..++..+.+ ..+....+|..-++-|+|||+|+++++
T Consensus 308 ~~~~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~-------~~~~~~~~~-----l~~~q~~~L~~a~~~LkpGG~lvystc 375 (429)
T 1sqg_A 308 SQWCGEQQFDRILLDAPCSATGVIRRHPDIKW-------LRRDRDIPE-----LAQLQSEILDAIWPHLKTGGTLVYATC 375 (429)
T ss_dssp HHHHTTCCEEEEEEECCCCCGGGTTTCTTHHH-------HCCTTHHHH-----HHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred hhhcccCCCCEEEEeCCCCcccccCCCcchhh-------cCCHHHHHH-----HHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 2 56789999997 334444444442211 011111111 112234789999999999999999986
Q ss_pred cc
Q 037735 195 SV 196 (329)
Q Consensus 195 g~ 196 (329)
..
T Consensus 376 s~ 377 (429)
T 1sqg_A 376 SV 377 (429)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=1.7e-05 Score=75.13 Aligned_cols=107 Identities=9% Similarity=-0.025 Sum_probs=71.5
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC-------Ccceeeeccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ-------SRSYYAAGVP 113 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~-------~~~~f~~gvp 113 (329)
+++.+|+|+|||+|..+..+.+ . .|..+++..|+........-+.++. .+--+..+
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~--------~-------~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~-- 177 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCK--------Y-------KSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIE-- 177 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTT--------C-------TTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEES--
T ss_pred CCCCEEEEEcCCccHHHHHHHH--------c-------CCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEc--
Confidence 4568999999999999988863 1 2346899999987666555444432 12234444
Q ss_pred ccccccc-CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcH--HHHHHHHHHHhccCceEE
Q 037735 114 GSFYSSL-FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDF--QTFLNTRAQELVPGGLAA 190 (329)
Q Consensus 114 gsFy~~l-fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~--~~FL~~ra~eL~pGG~l~ 190 (329)
+..+-+ .+++++|+|++...-+|- |. .++ ..|++...+.|+|||+|+
T Consensus 178 -D~~~~l~~~~~~fDvIi~d~~~p~~---~~--------------------------~~l~~~~~l~~~~~~LkpgG~lv 227 (321)
T 2pt6_A 178 -DASKFLENVTNTYDVIIVDSSDPIG---PA--------------------------ETLFNQNFYEKIYNALKPNGYCV 227 (321)
T ss_dssp -CHHHHHHHCCSCEEEEEEECCCSSS---GG--------------------------GGGSSHHHHHHHHHHEEEEEEEE
T ss_pred -cHHHHHhhcCCCceEEEECCcCCCC---cc--------------------------hhhhHHHHHHHHHHhcCCCcEEE
Confidence 332222 246889999997654441 10 111 478999999999999999
Q ss_pred EEec
Q 037735 191 LVMF 194 (329)
Q Consensus 191 ~~~~ 194 (329)
+...
T Consensus 228 ~~~~ 231 (321)
T 2pt6_A 228 AQCE 231 (321)
T ss_dssp EEEC
T ss_pred EEcC
Confidence 9863
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.86 E-value=3e-05 Score=68.92 Aligned_cols=98 Identities=15% Similarity=0.223 Sum_probs=66.2
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CC-Ccceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQ-SRSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~-~~~~f~~gvpgsFy 117 (329)
...+|+|+|||+|..+..+.+. ..+++..|+........-+.+ .- .+.-+.. +++.
T Consensus 91 ~~~~vldiG~G~G~~~~~l~~~-----------------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~---~d~~ 150 (248)
T 2yvl_A 91 KEKRVLEFGTGSGALLAVLSEV-----------------AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFN---VDFK 150 (248)
T ss_dssp TTCEEEEECCTTSHHHHHHHHH-----------------SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEEC---SCTT
T ss_pred CCCEEEEeCCCccHHHHHHHHh-----------------CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEE---cChh
Confidence 4569999999999999988751 147999999876655543332 11 1122333 3564
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
+.+++++++|++++. +|. ...+|+...+.|+|||++++....
T Consensus 151 ~~~~~~~~~D~v~~~--------~~~----------------------------~~~~l~~~~~~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 151 DAEVPEGIFHAAFVD--------VRE----------------------------PWHYLEKVHKSLMEGAPVGFLLPT 192 (248)
T ss_dssp TSCCCTTCBSEEEEC--------SSC----------------------------GGGGHHHHHHHBCTTCEEEEEESS
T ss_pred hcccCCCcccEEEEC--------CcC----------------------------HHHHHHHHHHHcCCCCEEEEEeCC
Confidence 433377899999973 221 124588889999999999998843
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.82 E-value=2.8e-05 Score=77.60 Aligned_cols=126 Identities=13% Similarity=0.083 Sum_probs=77.8
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~f~~gvpgsFy~ 118 (329)
...+|+|+|||+|..|..+.+.+ .+..+|+.+|+.......+-+++. -..-.++.+....+
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~--------------~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~-- 180 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARM--------------NNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVF-- 180 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHT--------------TTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTH--
T ss_pred CCCEEEEeCCCCCHHHHHHHHhC--------------CCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHh--
Confidence 45799999999999999987522 223589999999887777655442 11123444432222
Q ss_pred ccC-CCCceeEEEe---ccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 119 SLF-PKSSLHFVHS---SYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 119 ~lf-p~~s~dl~~S---s~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
.. +++++|.|++ ++...-+.+.|...|. -++..+.+ ....-..+|..-++-|+|||+|++++.
T Consensus 181 -~~~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~-------~~~~~~~~-----l~~~q~~iL~~a~~~LkpGG~LvysTc 247 (479)
T 2frx_A 181 -GAAVPEMFDAILLDAPCSGEGVVRKDPDALKN-------WSPESNQE-----IAATQRELIDSAFHALRPGGTLVYSTC 247 (479)
T ss_dssp -HHHSTTCEEEEEEECCCCCGGGGGTCTTSSSS-------CCHHHHHH-----HHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred -hhhccccCCEEEECCCcCCcccccCCHHHHhh-------cCHhHHHH-----HHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 11 4678999997 3444434444433110 01111211 112224789999999999999999987
Q ss_pred cc
Q 037735 195 SV 196 (329)
Q Consensus 195 g~ 196 (329)
..
T Consensus 248 s~ 249 (479)
T 2frx_A 248 TL 249 (479)
T ss_dssp CC
T ss_pred cC
Confidence 54
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=9.3e-06 Score=71.62 Aligned_cols=102 Identities=13% Similarity=0.127 Sum_probs=66.0
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CC-Ccceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQ-SRSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~-~~~~f~~gvpgsFy 117 (329)
+..+|+|+|||+|..|..+...+ .+..+++..|+........-+.+ .. .+--+..| ++.
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~--------------~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~---d~~ 131 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALAL--------------PADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLK---PAL 131 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTS--------------CTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEES---CHH
T ss_pred CCCEEEEEcCCccHHHHHHHHhC--------------CCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEc---CHH
Confidence 45799999999999998887411 12468999999766555443332 11 12234444 343
Q ss_pred cc---cCCC---CceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEE
Q 037735 118 SS---LFPK---SSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAAL 191 (329)
Q Consensus 118 ~~---lfp~---~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~ 191 (329)
+. +... +++|++++... . .+...+++...+-|+|||++++
T Consensus 132 ~~~~~~~~~~~~~~~D~v~~d~~--------~--------------------------~~~~~~l~~~~~~L~pgG~lv~ 177 (229)
T 2avd_A 132 ETLDELLAAGEAGTFDVAVVDAD--------K--------------------------ENCSAYYERCLQLLRPGGILAV 177 (229)
T ss_dssp HHHHHHHHTTCTTCEEEEEECSC--------S--------------------------TTHHHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHhcCCCCCccEEEECCC--------H--------------------------HHHHHHHHHHHHHcCCCeEEEE
Confidence 22 2111 78999998432 1 1345788899999999999998
Q ss_pred Eec
Q 037735 192 VMF 194 (329)
Q Consensus 192 ~~~ 194 (329)
...
T Consensus 178 ~~~ 180 (229)
T 2avd_A 178 LRV 180 (229)
T ss_dssp ECC
T ss_pred ECC
Confidence 654
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=97.79 E-value=2.1e-05 Score=70.24 Aligned_cols=106 Identities=12% Similarity=0.120 Sum_probs=66.7
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CC-Ccceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQ-SRSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~-~~~~f~~gvpgsFy 117 (329)
++.+|+|+|||+|..|..+.. .+ .+..+++..|.........-+.+ .- .+--+..|....+.
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~--------~~------~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l 137 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMAL--------QL------PPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATL 137 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHT--------TS------CTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHH
T ss_pred CCCEEEEecCCCCHHHHHHHH--------hC------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH
Confidence 356999999999999998874 11 22358999999765544433222 11 11234444221222
Q ss_pred ccc-CCC--CceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 118 SSL-FPK--SSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 118 ~~l-fp~--~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
..+ +++ +++|++++... . .++..+|+...+-|+|||++++...
T Consensus 138 ~~l~~~~~~~~fD~V~~d~~---~-------------------------------~~~~~~l~~~~~~LkpgG~lv~~~~ 183 (232)
T 3cbg_A 138 EQLTQGKPLPEFDLIFIDAD---K-------------------------------RNYPRYYEIGLNLLRRGGLMVIDNV 183 (232)
T ss_dssp HHHHTSSSCCCEEEEEECSC---G-------------------------------GGHHHHHHHHHHTEEEEEEEEEECT
T ss_pred HHHHhcCCCCCcCEEEECCC---H-------------------------------HHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 222 223 78999987532 1 1445788899999999999999755
Q ss_pred c
Q 037735 195 S 195 (329)
Q Consensus 195 g 195 (329)
.
T Consensus 184 ~ 184 (232)
T 3cbg_A 184 L 184 (232)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=97.78 E-value=8.6e-06 Score=71.18 Aligned_cols=101 Identities=12% Similarity=0.058 Sum_probs=65.7
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---C-cceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---S-RSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~-~~~f~~gvpgsFy 117 (329)
++.+|+|+|||+|..|..+.. .. .+..+|+..|+........-+.+.. . +--+..| ++.
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~--------~~------~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~---d~~ 118 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFAR--------AI------SISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVG---DPL 118 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHT--------TS------CTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEES---CHH
T ss_pred CCCEEEEEcCCccHHHHHHHH--------hC------CCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEe---cHH
Confidence 356999999999999998874 11 1146899999987665544333211 1 1224444 443
Q ss_pred ccc-CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 118 SSL-FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 118 ~~l-fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
+.+ .+++ +|++++... . .+...+|+...+-|+|||++++...
T Consensus 119 ~~~~~~~~-fD~v~~~~~--------~--------------------------~~~~~~l~~~~~~LkpgG~lv~~~~ 161 (210)
T 3c3p_A 119 GIAAGQRD-IDILFMDCD--------V--------------------------FNGADVLERMNRCLAKNALLIAVNA 161 (210)
T ss_dssp HHHTTCCS-EEEEEEETT--------T--------------------------SCHHHHHHHHGGGEEEEEEEEEESS
T ss_pred HHhccCCC-CCEEEEcCC--------h--------------------------hhhHHHHHHHHHhcCCCeEEEEECc
Confidence 322 2346 999987621 1 1445789999999999999998543
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00012 Score=70.49 Aligned_cols=122 Identities=14% Similarity=0.214 Sum_probs=72.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccC
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLF 121 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lf 121 (329)
+..+|+|+|||+|..+..+.+.. .+..+++..|+-....... . +.-+.. +++.. ..
T Consensus 39 ~~~~vLD~gcGtG~~~~~~~~~~--------------~~~~~i~gvDi~~~~~~~a-----~-~~~~~~---~D~~~-~~ 94 (421)
T 2ih2_A 39 RGGRVLEPACAHGPFLRAFREAH--------------GTAYRFVGVEIDPKALDLP-----P-WAEGIL---ADFLL-WE 94 (421)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHH--------------CSCSEEEEEESCTTTCCCC-----T-TEEEEE---SCGGG-CC
T ss_pred CCCEEEECCCCChHHHHHHHHHh--------------CCCCeEEEEECCHHHHHhC-----C-CCcEEe---CChhh-cC
Confidence 34599999999999988887522 1335889999865443322 1 122333 35543 34
Q ss_pred CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHh------hcHHHHHHHHHHHhccCceEEEEecc
Q 037735 122 PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFN------NDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 122 p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~------~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
+.+++|+|+++=-........ .. ....+++..+.|...+. ..+..|++.-.+-|+|||++++.+..
T Consensus 95 ~~~~fD~Ii~NPPy~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~ 166 (421)
T 2ih2_A 95 PGEAFDLILGNPPYGIVGEAS-------KY-PIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 166 (421)
T ss_dssp CSSCEEEEEECCCCCCBSCTT-------TC-SBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred ccCCCCEEEECcCccCccccc-------cc-ccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence 567899999962222111100 00 00012344444433211 13568999999999999999999864
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=1.2e-05 Score=79.95 Aligned_cols=126 Identities=11% Similarity=0.038 Sum_probs=75.8
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--Ccceeeeccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--SRSYYAAGVPGSFYSS 119 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--~~~~f~~gvpgsFy~~ 119 (329)
+..+|+|+|||+|..|..+.+.+ ....+|+.+|+.......+-+++.. ....++.+ +...-
T Consensus 101 ~g~~VLDlgaGpG~kt~~LA~~~--------------~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~---Da~~l 163 (464)
T 3m6w_A 101 PGERVLDLAAAPGGKTTHLAARM--------------GGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQA---PPRAL 163 (464)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHT--------------TTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECS---CHHHH
T ss_pred CCCEEEEEcCCcCHHHHHHHHhC--------------CCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEEC---CHHHh
Confidence 45799999999999999998622 1225899999988777766554421 11234444 33221
Q ss_pred c-CCCCceeEEEe---ccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 120 L-FPKSSLHFVHS---SYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 120 l-fp~~s~dl~~S---s~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
. ++++++|+|++ .+..--+.+.|...| ..++..+.+. .+.-..+|..-++-|+|||+|+.++..
T Consensus 164 ~~~~~~~FD~Il~D~PcSg~G~~rr~pd~~~-------~~~~~~~~~l-----~~~Q~~iL~~a~~~LkpGG~LvysTCs 231 (464)
T 3m6w_A 164 AEAFGTYFHRVLLDAPCSGEGMFRKDREAAR-------HWGPSAPKRM-----AEVQKALLAQASRLLGPGGVLVYSTCT 231 (464)
T ss_dssp HHHHCSCEEEEEEECCCCCGGGTTTCTTSGG-------GCCTTHHHHH-----HHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred hhhccccCCEEEECCCcCCccccccChHHhh-------hcCHHHHHHH-----HHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 2 24688999985 122222222332201 1112222211 122357899999999999999999865
Q ss_pred c
Q 037735 196 V 196 (329)
Q Consensus 196 ~ 196 (329)
.
T Consensus 232 ~ 232 (464)
T 3m6w_A 232 F 232 (464)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=97.75 E-value=3.7e-05 Score=73.11 Aligned_cols=113 Identities=15% Similarity=0.185 Sum_probs=70.6
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC-----CCcceeeecccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP-----QSRSYYAAGVPGSF 116 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~-----~~~~~f~~gvpgsF 116 (329)
+..+|||+|||+|..|+.+.. . . .+|+..|+.......+-+++. ..+--|+.+ ++
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~--------~-------g--a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~---D~ 212 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAA--------A-------G--AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICE---DA 212 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHH--------T-------T--CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECS---CH
T ss_pred CCCcEEEcccccCHHHHHHHH--------c-------C--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEEC---cH
Confidence 346899999999999998874 1 1 379999998766665544321 101235554 44
Q ss_pred ccccC----CCCceeEEEeccceecccCCCCC-CCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEE
Q 037735 117 YSSLF----PKSSLHFVHSSYTLHWLSKVPKV-DGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAAL 191 (329)
Q Consensus 117 y~~lf----p~~s~dl~~Ss~alhWLs~~p~~-~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~ 191 (329)
.+-+. ..+++|+|++. +|.- ...++.++ ...+|+..+|+...+.|+|||++++
T Consensus 213 ~~~l~~~~~~~~~fD~Ii~d--------PP~~~~~~~~~~~--------------~~~~~~~~ll~~~~~~LkpgG~lli 270 (332)
T 2igt_A 213 MKFIQREERRGSTYDIILTD--------PPKFGRGTHGEVW--------------QLFDHLPLMLDICREILSPKALGLV 270 (332)
T ss_dssp HHHHHHHHHHTCCBSEEEEC--------CCSEEECTTCCEE--------------EHHHHHHHHHHHHHHTBCTTCCEEE
T ss_pred HHHHHHHHhcCCCceEEEEC--------CccccCCchHHHH--------------HHHHHHHHHHHHHHHhcCcCcEEEE
Confidence 33221 15789999984 2211 00000011 1234667899999999999999888
Q ss_pred Eeccc
Q 037735 192 VMFSV 196 (329)
Q Consensus 192 ~~~g~ 196 (329)
.....
T Consensus 271 ~~~~~ 275 (332)
T 2igt_A 271 LTAYS 275 (332)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 77553
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=97.75 E-value=3.8e-05 Score=70.63 Aligned_cols=94 Identities=6% Similarity=-0.061 Sum_probs=63.8
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC-------Ccceeeeccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ-------SRSYYAAGVP 113 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~-------~~~~f~~gvp 113 (329)
+++.+|||+|||+|..+..++. .+ .+++..|+-.......-+.++. .+--+..|.+
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~----------------~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~ 133 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFK----------------YD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLL 133 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTT----------------SS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGG
T ss_pred CCCCEEEEEeCCcCHHHHHHHh----------------CC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechH
Confidence 4567999999999998877763 23 4899999976655544333332 1223444443
Q ss_pred cccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 114 GSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 114 gsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
..| + +++|+|++.. + .| ..|++...+.|+|||+|++..
T Consensus 134 ~~~-----~-~~fD~Ii~d~-----~-dp------------------------------~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 134 DLD-----I-KKYDLIFCLQ-----E-PD------------------------------IHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp GSC-----C-CCEEEEEESS-----C-CC------------------------------HHHHHHHHTTEEEEEEEEEEE
T ss_pred HHH-----H-hhCCEEEECC-----C-Ch------------------------------HHHHHHHHHhcCCCcEEEEEc
Confidence 222 2 7899999862 1 12 138999999999999999974
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=5.1e-05 Score=70.38 Aligned_cols=117 Identities=19% Similarity=0.168 Sum_probs=67.3
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CC-cceeeecccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QS-RSYYAAGVPGSFYS 118 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~-~~~f~~gvpgsFy~ 118 (329)
..+|+|+|||+|..+..+.. . |..+|+..|+........-++.. -. +--|..+ ++.+
T Consensus 124 ~~~vLDlG~GsG~~~~~la~--------~--------~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~---D~~~ 184 (284)
T 1nv8_A 124 IKTVADIGTGSGAIGVSVAK--------F--------SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKG---EFLE 184 (284)
T ss_dssp CCEEEEESCTTSHHHHHHHH--------H--------SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEES---STTG
T ss_pred CCEEEEEeCchhHHHHHHHH--------C--------CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEEC---cchh
Confidence 36899999999999988874 1 23689999998766655444321 11 1334544 4544
Q ss_pred ccCCCCce---eEEEeccceecccC-CCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHH-HHhccCceEEEEe
Q 037735 119 SLFPKSSL---HFVHSSYTLHWLSK-VPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRA-QELVPGGLAALVM 193 (329)
Q Consensus 119 ~lfp~~s~---dl~~Ss~alhWLs~-~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra-~eL~pGG~l~~~~ 193 (329)
.++ +++ |+|+|+--...... ++.. +. ..|.. +.+ ...|-..|++..+ +.|+|||+|++.+
T Consensus 185 -~~~-~~f~~~D~IvsnPPyi~~~~~l~~~------v~--~ep~~--al~---~~~dgl~~~~~i~~~~l~pgG~l~~e~ 249 (284)
T 1nv8_A 185 -PFK-EKFASIEMILSNPPYVKSSAHLPKD------VL--FEPPE--ALF---GGEDGLDFYREFFGRYDTSGKIVLMEI 249 (284)
T ss_dssp -GGG-GGTTTCCEEEECCCCBCGGGSCTTS------CC--CSCHH--HHB---CTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred -hcc-cccCCCCEEEEcCCCCCcccccChh------hc--cCcHH--Hhc---CCCcHHHHHHHHHHhcCCCCCEEEEEE
Confidence 233 578 99999732222111 1100 00 00000 000 0112236788888 9999999999854
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.68 E-value=8.7e-05 Score=68.18 Aligned_cols=103 Identities=12% Similarity=0.027 Sum_probs=69.6
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--C-Ccceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--Q-SRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~-~~~~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|..|+.+.. + .+..+|+..|+.......+-+++. . ....|+.|. +.+
T Consensus 119 ~~~~VLDlgcG~G~~s~~la~--------~-------~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d---~~~ 180 (272)
T 3a27_A 119 ENEVVVDMFAGIGYFTIPLAK--------Y-------SKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILAD---NRD 180 (272)
T ss_dssp TTCEEEETTCTTTTTHHHHHH--------H-------TCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESC---GGG
T ss_pred CCCEEEEecCcCCHHHHHHHH--------h-------CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECC---hHH
Confidence 457899999999999999875 2 122589999998766665544331 1 123456654 432
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCC
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
- -..+++|++++.... +...++....+.|+|||+++++.....+
T Consensus 181 ~-~~~~~~D~Vi~d~p~-----------------------------------~~~~~l~~~~~~LkpgG~l~~s~~~~~~ 224 (272)
T 3a27_A 181 V-ELKDVADRVIMGYVH-----------------------------------KTHKFLDKTFEFLKDRGVIHYHETVAEK 224 (272)
T ss_dssp C-CCTTCEEEEEECCCS-----------------------------------SGGGGHHHHHHHEEEEEEEEEEEEEEGG
T ss_pred c-CccCCceEEEECCcc-----------------------------------cHHHHHHHHHHHcCCCCEEEEEEcCccc
Confidence 2 115789999875322 2235688888999999999999887543
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.61 E-value=7.2e-05 Score=74.62 Aligned_cols=101 Identities=16% Similarity=0.136 Sum_probs=62.5
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CC-Ccceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQ-SRSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~-~~~~f~~gvpgsFy 117 (329)
+..+|+|+|||+|..++.+.. .+..+|+..|+.. +....-+.+ .- .+--++.| ++.
T Consensus 158 ~~~~VLDiGcGtG~la~~la~----------------~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~---d~~ 217 (480)
T 3b3j_A 158 KDKIVLDVGCGSGILSFFAAQ----------------AGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPG---KVE 217 (480)
T ss_dssp TTCEEEEESCSTTHHHHHHHH----------------TTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEES---CTT
T ss_pred CCCEEEEecCcccHHHHHHHH----------------cCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEEC---chh
Confidence 457999999999998876653 2235899999865 543332221 11 12234443 554
Q ss_pred cccCCCCceeEEEecccee-cccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 118 SSLFPKSSLHFVHSSYTLH-WLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alh-WLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
+-.+| +++|+|+|+..++ |.. .++...|....+.|+|||+|++..
T Consensus 218 ~~~~~-~~fD~Ivs~~~~~~~~~------------------------------e~~~~~l~~~~~~LkpgG~li~~~ 263 (480)
T 3b3j_A 218 EVSLP-EQVDIIISEPMGYMLFN------------------------------ERMLESYLHAKKYLKPSGNMFPTI 263 (480)
T ss_dssp TCCCS-SCEEEEECCCCHHHHTC------------------------------HHHHHHHHHGGGGEEEEEEEESCE
T ss_pred hCccC-CCeEEEEEeCchHhcCc------------------------------HHHHHHHHHHHHhcCCCCEEEEEe
Confidence 42334 6899999987643 421 122344555668999999998543
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=2.4e-05 Score=72.48 Aligned_cols=84 Identities=12% Similarity=0.058 Sum_probs=57.9
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--CCcceeeecccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--QSRSYYAAGVPGSFYS 118 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~~~~~f~~gvpgsFy~ 118 (329)
+.+.+|+|+|||+|+++..++. ..|..+++..|.-..+..-+-..+. ....-+..+ ++-.
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~---------------~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~---D~~~ 192 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMG---------------LPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVA---DLLE 192 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTT---------------CCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEEC---CTTT
T ss_pred CCCceeeeeccCccHHHHHHHh---------------hCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEe---eecc
Confidence 4588999999999999999874 1466899999998765554433321 111112221 3423
Q ss_pred ccCCCCceeEEEeccceecccCCCC
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPK 143 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~ 143 (329)
. .|+...|++.++-++|-|.+-..
T Consensus 193 ~-~p~~~~DvaL~lkti~~Le~q~k 216 (281)
T 3lcv_B 193 D-RLDEPADVTLLLKTLPCLETQQR 216 (281)
T ss_dssp S-CCCSCCSEEEETTCHHHHHHHST
T ss_pred c-CCCCCcchHHHHHHHHHhhhhhh
Confidence 3 37788999999999999976543
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=9.7e-05 Score=67.61 Aligned_cols=96 Identities=11% Similarity=-0.014 Sum_probs=62.7
Q ss_pred HhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--
Q 037735 25 RYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP-- 102 (329)
Q Consensus 25 ~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~-- 102 (329)
+|.++.-...+... ..+.+|+|+|||+|+++..++ |...++..|+....-+.+-+.+.
T Consensus 90 Lp~ld~fY~~i~~~--~~p~~VLDlGCG~gpLal~~~------------------~~~~y~a~DId~~~i~~ar~~~~~~ 149 (253)
T 3frh_A 90 LAELDTLYDFIFSA--ETPRRVLDIACGLNPLALYER------------------GIASVWGCDIHQGLGDVITPFAREK 149 (253)
T ss_dssp GGGHHHHHHHHTSS--CCCSEEEEETCTTTHHHHHHT------------------TCSEEEEEESBHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHhcC--CCCCeEEEecCCccHHHHHhc------------------cCCeEEEEeCCHHHHHHHHHHHHhc
Confidence 45555443333222 457899999999999988875 23689999998776665533321
Q ss_pred CCcceeeeccccccccccCCCCceeEEEeccceecccCCCCC
Q 037735 103 QSRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKV 144 (329)
Q Consensus 103 ~~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~ 144 (329)
..+.-|.. +++.... |+.+.|++.++-++|-|.+....
T Consensus 150 g~~~~~~v---~D~~~~~-~~~~~DvvLllk~lh~LE~q~~~ 187 (253)
T 3frh_A 150 DWDFTFAL---QDVLCAP-PAEAGDLALIFKLLPLLEREQAG 187 (253)
T ss_dssp TCEEEEEE---CCTTTSC-CCCBCSEEEEESCHHHHHHHSTT
T ss_pred CCCceEEE---eecccCC-CCCCcchHHHHHHHHHhhhhchh
Confidence 11112232 2454444 55699999999999999876543
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00034 Score=63.10 Aligned_cols=126 Identities=9% Similarity=0.036 Sum_probs=82.2
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---C-cceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---S-RSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~-~~~f~~gvpgsF 116 (329)
++..+|+|+|||||..++.+.. . .|..+|+..|.........-+++.. . +--+..| +.
T Consensus 14 ~~g~~VlDIGtGsG~l~i~la~--------~-------~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~---d~ 75 (225)
T 3kr9_A 14 SQGAILLDVGSDHAYLPIELVE--------R-------GQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLA---NG 75 (225)
T ss_dssp CTTEEEEEETCSTTHHHHHHHH--------T-------TSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEEC---SG
T ss_pred CCCCEEEEeCCCcHHHHHHHHH--------h-------CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEEC---ch
Confidence 3457999999999999999875 2 3445899999987776665554321 1 1223333 44
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
++.+-|...+|+++.+-. ..+ -+..+|....+-|+|||+|+++-.
T Consensus 76 l~~l~~~~~~D~IviaG~----------------------Gg~-----------~i~~Il~~~~~~L~~~~~lVlq~~-- 120 (225)
T 3kr9_A 76 LAAFEETDQVSVITIAGM----------------------GGR-----------LIARILEEGLGKLANVERLILQPN-- 120 (225)
T ss_dssp GGGCCGGGCCCEEEEEEE----------------------CHH-----------HHHHHHHHTGGGCTTCCEEEEEES--
T ss_pred hhhcccCcCCCEEEEcCC----------------------ChH-----------HHHHHHHHHHHHhCCCCEEEEECC--
Confidence 444433335887775311 001 134788888899999999998653
Q ss_pred CCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 197 PDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
+ ..++++.++.+. +|+|.....+
T Consensus 121 -~-------------------------------------~~~~vr~~L~~~-Gf~i~~e~lv 143 (225)
T 3kr9_A 121 -N-------------------------------------REDDLRIWLQDH-GFQIVAESIL 143 (225)
T ss_dssp -S-------------------------------------CHHHHHHHHHHT-TEEEEEEEEE
T ss_pred -C-------------------------------------CHHHHHHHHHHC-CCEEEEEEEE
Confidence 1 156778888877 4888776543
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=97.54 E-value=6.8e-05 Score=74.43 Aligned_cols=126 Identities=11% Similarity=0.073 Sum_probs=76.0
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~f~~gvpgsFy~ 118 (329)
...+|+|+|||+|..|..+...+ ....+|+.+|+.......+-+++. -....+..+.+..+-.
T Consensus 105 ~g~~VLDlcaGpGgkt~~lA~~~--------------~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~ 170 (456)
T 3m4x_A 105 PGEKVLDLCAAPGGKSTQLAAQM--------------KGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVP 170 (456)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHH--------------TTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHH
T ss_pred CCCEEEEECCCcCHHHHHHHHHc--------------CCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhh
Confidence 45799999999999999997633 223589999998877666654432 1122344443322211
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHH----HHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEA----YAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~a----y~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
.+++++|+|++ ++|++. -|.+ ...|+.... ........-..+|..-++-|+|||+|+.++.
T Consensus 171 --~~~~~FD~Il~--------DaPCSg--~G~~---rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 235 (456)
T 3m4x_A 171 --HFSGFFDRIVV--------DAPCSG--EGMF---RKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTC 235 (456)
T ss_dssp --HHTTCEEEEEE--------ECCCCC--GGGT---TTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred --hccccCCEEEE--------CCCCCC--cccc---ccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 23578999976 466550 0000 011222110 1112222335889999999999999999987
Q ss_pred cc
Q 037735 195 SV 196 (329)
Q Consensus 195 g~ 196 (329)
..
T Consensus 236 s~ 237 (456)
T 3m4x_A 236 TF 237 (456)
T ss_dssp CC
T ss_pred ec
Confidence 53
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.51 E-value=6.5e-06 Score=74.36 Aligned_cols=113 Identities=13% Similarity=0.111 Sum_probs=64.2
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcc-eeeeccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRS-YYAAGVPGSFYSS 119 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~-~f~~gvpgsFy~~ 119 (329)
.+..+|+|+|||+|..|..+.. + . .+|+..|+.......+-+.+....+ .++. +++.+-
T Consensus 28 ~~~~~VLDiG~G~G~~~~~l~~--------~-------~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~---~D~~~~ 87 (245)
T 1yub_A 28 KETDTVYEIGTGKGHLTTKLAK--------I-------S--KQVTSIELDSHLFNLSSEKLKLNTRVTLIH---QDILQF 87 (245)
T ss_dssp CSSEEEEECSCCCSSCSHHHHH--------H-------S--SEEEESSSSCSSSSSSSCTTTTCSEEEECC---SCCTTT
T ss_pred CCCCEEEEEeCCCCHHHHHHHH--------h-------C--CeEEEEECCHHHHHHHHHHhccCCceEEEE---CChhhc
Confidence 3457899999999999999875 2 1 3789999876554443333321112 2333 466544
Q ss_pred cCCC-CceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHH----HHHHHHhccCceEEEEec
Q 037735 120 LFPK-SSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFL----NTRAQELVPGGLAALVMF 194 (329)
Q Consensus 120 lfp~-~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL----~~ra~eL~pGG~l~~~~~ 194 (329)
.+|. +++ .++|+--.++-+ ........+ ..+...+| +...+-|+|||.|++...
T Consensus 88 ~~~~~~~f-~vv~n~Py~~~~-------------------~~~~~~~~~-~~~~~~~lm~q~e~a~rll~~~G~l~v~~~ 146 (245)
T 1yub_A 88 QFPNKQRY-KIVGNIPYHLST-------------------QIIKKVVFE-SRASDIYLIVEEGFYKRTLDIHRTLGLLLH 146 (245)
T ss_dssp TCCCSSEE-EEEEECCSSSCH-------------------HHHHHHHHH-CCCEEEEEEEESSHHHHHHCGGGSHHHHTT
T ss_pred CcccCCCc-EEEEeCCccccH-------------------HHHHHHHhC-CCCCeEEEEeeHHHHHHHhCCCCchhhhhe
Confidence 4563 677 666653322210 111111111 12223345 667889999999877653
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.001 Score=60.13 Aligned_cols=126 Identities=13% Similarity=0.100 Sum_probs=85.4
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC----Ccceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ----SRSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~----~~~~f~~gvpgsF 116 (329)
++..+|+|+|||||..++.+.. . .|..+|+..|+........-+++.. .+--+..| +.
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~--------~-------~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~g---D~ 81 (230)
T 3lec_A 20 PKGARLLDVGSDHAYLPIFLLQ--------M-------GYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLA---NG 81 (230)
T ss_dssp CTTEEEEEETCSTTHHHHHHHH--------T-------TCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEEC---SG
T ss_pred CCCCEEEEECCchHHHHHHHHH--------h-------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC---ch
Confidence 3458999999999999999875 2 2335899999988777776555421 11233443 55
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
++-+.|.+.+|++++.-.. . .-+..+|....+-|+++|+|+++-.
T Consensus 82 l~~~~~~~~~D~IviaGmG----------------------g-----------~lI~~IL~~~~~~l~~~~~lIlqp~-- 126 (230)
T 3lec_A 82 LSAFEEADNIDTITICGMG----------------------G-----------RLIADILNNDIDKLQHVKTLVLQPN-- 126 (230)
T ss_dssp GGGCCGGGCCCEEEEEEEC----------------------H-----------HHHHHHHHHTGGGGTTCCEEEEEES--
T ss_pred hhccccccccCEEEEeCCc----------------------h-----------HHHHHHHHHHHHHhCcCCEEEEECC--
Confidence 5666565578887753110 0 1234778888888999999988762
Q ss_pred CCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 197 PDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
-..++++.++.+. +|+|.....+
T Consensus 127 --------------------------------------~~~~~lr~~L~~~-Gf~i~~E~lv 149 (230)
T 3lec_A 127 --------------------------------------NREDDLRKWLAAN-DFEIVAEDIL 149 (230)
T ss_dssp --------------------------------------SCHHHHHHHHHHT-TEEEEEEEEE
T ss_pred --------------------------------------CChHHHHHHHHHC-CCEEEEEEEE
Confidence 1167788888888 4988876654
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00045 Score=59.68 Aligned_cols=77 Identities=18% Similarity=0.177 Sum_probs=52.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC--cceeeeccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS--RSYYAAGVPGSFYSS 119 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~--~~~f~~gvpgsFy~~ 119 (329)
+..+|+|+|||+|..+..+.. . .+ -+++..|+.......+-+.+... +.-++.+ ++.+
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~--------~-------~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~---d~~~- 108 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALL--------L-------GA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIG---DVSE- 108 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHH--------T-------TC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEES---CGGG-
T ss_pred CcCEEEEeeCCCCHHHHHHHH--------c-------CC-CEEEEEECCHHHHHHHHHHHHHcCCCEEEEEC---chHH-
Confidence 457899999999999988764 1 11 26999999876666554444321 1234443 4533
Q ss_pred cCCCCceeEEEeccceecccC
Q 037735 120 LFPKSSLHFVHSSYTLHWLSK 140 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~ 140 (329)
+| +++|+++++-.+|+.++
T Consensus 109 -~~-~~~D~v~~~~p~~~~~~ 127 (207)
T 1wy7_A 109 -FN-SRVDIVIMNPPFGSQRK 127 (207)
T ss_dssp -CC-CCCSEEEECCCCSSSST
T ss_pred -cC-CCCCEEEEcCCCccccC
Confidence 24 58999999988888654
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00037 Score=65.96 Aligned_cols=125 Identities=11% Similarity=0.038 Sum_probs=73.6
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--CCcceeeeccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--QSRSYYAAGVPGSFYSS 119 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~~~~~f~~gvpgsFy~~ 119 (329)
...+|+|+|||||..+..+.+.+- ... ....+++..|+-.......-.++. ....-+..| ++..
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~----~~~------~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~---D~l~- 195 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLE----LKG------DVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQ---DGLA- 195 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHH----TTS------SCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEES---CTTS-
T ss_pred CCCEEEeCCCCccHHHHHHHHHHH----Hhc------CCCceEEEEECCHHHHHHHHHHHHhCCCCceEEEC---CCCC-
Confidence 568999999999999988876431 100 112689999997655444332221 111223333 4433
Q ss_pred cCCCCceeEEEeccceecccCCCCC-CCCccceeecCCcHHHHHHHHHHHhhcHH-HHHHHHHHHhccCceEEEEecc
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKV-DGVEGSIQTRRFVNEVMEAYAAQFNNDFQ-TFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~-~~n~g~i~~~~~~~~~~~ay~~q~~~D~~-~FL~~ra~eL~pGG~l~~~~~g 195 (329)
..+.+.+|+|+++--+++....... .+..+ .+ ....|.. .|+....+-|+|||++++.+..
T Consensus 196 ~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~------~~---------~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p~ 258 (344)
T 2f8l_A 196 NLLVDPVDVVISDLPVGYYPDDENAKTFELC------RE---------EGHSFAHFLFIEQGMRYTKPGGYLFFLVPD 258 (344)
T ss_dssp CCCCCCEEEEEEECCCSEESCHHHHTTSTTC------CS---------SSCEEHHHHHHHHHHHTEEEEEEEEEEEEG
T ss_pred ccccCCccEEEECCCCCCcCchhhhhhcccc------CC---------CCcchHHHHHHHHHHHHhCCCCEEEEEECc
Confidence 3356789999999877664311000 01100 00 0011332 6899999999999999999853
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00039 Score=67.62 Aligned_cols=112 Identities=16% Similarity=0.108 Sum_probs=70.9
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--CCcceeeecccccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--QSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~~~~~f~~gvpgsFy~~l 120 (329)
..+|+|+|||||..|+.+.. . . ..|+..|+.......+-+++. ....-+..+ +..+-+
T Consensus 215 g~~VLDlg~GtG~~sl~~a~--------~-------g--a~V~avDis~~al~~a~~n~~~ng~~~~~~~~---D~~~~l 274 (393)
T 4dmg_A 215 GERVLDVYSYVGGFALRAAR--------K-------G--AYALAVDKDLEALGVLDQAALRLGLRVDIRHG---EALPTL 274 (393)
T ss_dssp TCEEEEESCTTTHHHHHHHH--------T-------T--CEEEEEESCHHHHHHHHHHHHHHTCCCEEEES---CHHHHH
T ss_pred CCeEEEcccchhHHHHHHHH--------c-------C--CeEEEEECCHHHHHHHHHHHHHhCCCCcEEEc---cHHHHH
Confidence 47899999999999998874 1 1 249999998777666544431 111123343 443322
Q ss_pred -CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 121 -FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 121 -fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
..++.+|+|++. +|.- ..+... .....+|+..++....+-|+|||+|++++...
T Consensus 275 ~~~~~~fD~Ii~d--------pP~f---------~~~~~~-----~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~ 329 (393)
T 4dmg_A 275 RGLEGPFHHVLLD--------PPTL---------VKRPEE-----LPAMKRHLVDLVREALRLLAEEGFLWLSSCSY 329 (393)
T ss_dssp HTCCCCEEEEEEC--------CCCC---------CSSGGG-----HHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred HHhcCCCCEEEEC--------CCcC---------CCCHHH-----HHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 113349999863 4421 111111 12345677889999999999999999777543
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00018 Score=69.62 Aligned_cols=115 Identities=7% Similarity=0.005 Sum_probs=69.6
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--C-C--cceeeeccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--Q-S--RSYYAAGVPGSFY 117 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~-~--~~~f~~gvpgsFy 117 (329)
..+|+|+|||||..|+.+.. . .. -+|+..|+........-++.. . . .--|+.|..-.+.
T Consensus 213 ~~~VLDl~cGtG~~sl~la~--------~-------ga-~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l 276 (385)
T 2b78_A 213 GKTVLNLFSYTAAFSVAAAM--------G-------GA-MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYF 276 (385)
T ss_dssp TCEEEEETCTTTHHHHHHHH--------T-------TB-SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHH
T ss_pred CCeEEEEeeccCHHHHHHHH--------C-------CC-CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHH
Confidence 36899999999999998864 1 11 279999998776665544321 1 1 2345555322221
Q ss_pred cccC-CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 118 SSLF-PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 118 ~~lf-p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
..+. ...++|+|++. +|.....++ . .....+++..++....+.|+|||.|++++..
T Consensus 277 ~~~~~~~~~fD~Ii~D--------PP~~~~~~~------~--------~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~ 333 (385)
T 2b78_A 277 KYARRHHLTYDIIIID--------PPSFARNKK------E--------VFSVSKDYHKLIRQGLEILSENGLIIASTNA 333 (385)
T ss_dssp HHHHHTTCCEEEEEEC--------CCCC-----------C--------CCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred HHHHHhCCCccEEEEC--------CCCCCCChh------h--------HHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 1211 24589999863 442100000 0 0112346678899999999999999998743
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0003 Score=67.69 Aligned_cols=112 Identities=13% Similarity=0.037 Sum_probs=72.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--CCc-ceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--QSR-SYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~~~-~~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|..|+.+.. . ..+|+..|+.......+-+++. ... --|+.| ++.+
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~--------~---------~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~---d~~~ 268 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLAL--------G---------FREVVAVDSSAEALRRAEENARLNGLGNVRVLEA---NAFD 268 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHH--------H---------EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEES---CHHH
T ss_pred CCCeEEEeeeccCHHHHHHHH--------h---------CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEC---CHHH
Confidence 346899999999999999875 1 1479999997665555433321 111 234554 4433
Q ss_pred ccC----CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 119 SLF----PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 119 ~lf----p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
-+. +++++|+|++ ++|....++ ..+ ....+++..++....+.|+|||.|++++.
T Consensus 269 ~~~~~~~~~~~fD~Ii~--------dpP~~~~~~---------~~~-----~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 326 (382)
T 1wxx_A 269 LLRRLEKEGERFDLVVL--------DPPAFAKGK---------KDV-----ERAYRAYKEVNLRAIKLLKEGGILATASC 326 (382)
T ss_dssp HHHHHHHTTCCEEEEEE--------CCCCSCCST---------TSH-----HHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred HHHHHHhcCCCeeEEEE--------CCCCCCCCh---------hHH-----HHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 221 2678999996 455321111 111 23345777899999999999999999885
Q ss_pred c
Q 037735 195 S 195 (329)
Q Consensus 195 g 195 (329)
.
T Consensus 327 ~ 327 (382)
T 1wxx_A 327 S 327 (382)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00014 Score=68.23 Aligned_cols=78 Identities=13% Similarity=-0.035 Sum_probs=55.7
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC-Ccceeeecccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ-SRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~-~~~~f~~gvpgsFy~~l 120 (329)
+..+|+|+|||+|..|..+.... .+|+..|+-......+-+.+.. .+--++.| ++.+--
T Consensus 50 ~~~~VLEIG~G~G~lT~~La~~~-----------------~~V~aVEid~~li~~a~~~~~~~~~v~vi~g---D~l~~~ 109 (295)
T 3gru_A 50 KDDVVLEIGLGKGILTEELAKNA-----------------KKVYVIEIDKSLEPYANKLKELYNNIEIIWG---DALKVD 109 (295)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHS-----------------SEEEEEESCGGGHHHHHHHHHHCSSEEEEES---CTTTSC
T ss_pred CcCEEEEECCCchHHHHHHHhcC-----------------CEEEEEECCHHHHHHHHHHhccCCCeEEEEC---chhhCC
Confidence 45689999999999999997511 3799999987776665444321 12234444 675555
Q ss_pred CCCCceeEEEeccceeccc
Q 037735 121 FPKSSLHFVHSSYTLHWLS 139 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs 139 (329)
+|+.++|.++++...+|-+
T Consensus 110 ~~~~~fD~Iv~NlPy~is~ 128 (295)
T 3gru_A 110 LNKLDFNKVVANLPYQISS 128 (295)
T ss_dssp GGGSCCSEEEEECCGGGHH
T ss_pred cccCCccEEEEeCcccccH
Confidence 7777899999998888844
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00032 Score=63.43 Aligned_cols=99 Identities=15% Similarity=0.054 Sum_probs=61.5
Q ss_pred cchHHHhHHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEec
Q 037735 8 HSYASNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFN 87 (329)
Q Consensus 8 ~sY~~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~n 87 (329)
.+|.+|-..+..++..+...+. ..+..+|+|+|||+|..|..+.+ +. .+|+..
T Consensus 6 k~~gQ~fl~d~~~~~~i~~~~~----------~~~~~~VLDiG~G~G~lt~~l~~--------~~---------~~v~~v 58 (244)
T 1qam_A 6 IKHSQNFITSKHNIDKIMTNIR----------LNEHDNIFEIGSGKGHFTLELVQ--------RC---------NFVTAI 58 (244)
T ss_dssp ----CCBCCCHHHHHHHHTTCC----------CCTTCEEEEECCTTSHHHHHHHH--------HS---------SEEEEE
T ss_pred ccCCccccCCHHHHHHHHHhCC----------CCCCCEEEEEeCCchHHHHHHHH--------cC---------CeEEEE
Confidence 4677777777777666554432 23457899999999999999875 21 379999
Q ss_pred CCCcchHHhhhhcCCCC-cceeeeccccccccccCCC-CceeEEEeccceec
Q 037735 88 DHSDNDFNTLFKSLPQS-RSYYAAGVPGSFYSSLFPK-SSLHFVHSSYTLHW 137 (329)
Q Consensus 88 DLp~ndfn~lf~~l~~~-~~~f~~gvpgsFy~~lfp~-~s~dl~~Ss~alhW 137 (329)
|+.......+-+.+... +-.++. |++.+-.+|. .++ .++|+...+|
T Consensus 59 D~~~~~~~~a~~~~~~~~~v~~~~---~D~~~~~~~~~~~~-~vv~nlPy~~ 106 (244)
T 1qam_A 59 EIDHKLCKTTENKLVDHDNFQVLN---KDILQFKFPKNQSY-KIFGNIPYNI 106 (244)
T ss_dssp CSCHHHHHHHHHHTTTCCSEEEEC---CCGGGCCCCSSCCC-EEEEECCGGG
T ss_pred ECCHHHHHHHHHhhccCCCeEEEE---ChHHhCCcccCCCe-EEEEeCCccc
Confidence 99877766665554321 222444 4675545664 344 5777766665
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0005 Score=66.02 Aligned_cols=98 Identities=8% Similarity=-0.026 Sum_probs=62.8
Q ss_pred hHHHhHHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCC
Q 037735 10 YASNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDH 89 (329)
Q Consensus 10 Y~~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDL 89 (329)
|...+.++..++..+..+. . .+..+|+|+|||+|..++.+.. . .+..+|+..|+
T Consensus 196 ~~~~a~l~~~la~~l~~~~---~--------~~~~~vLD~gCGsG~~~i~~a~--------~-------~~~~~v~g~Di 249 (373)
T 3tm4_A 196 YDHPAHLKASIANAMIELA---E--------LDGGSVLDPMCGSGTILIELAL--------R-------RYSGEIIGIEK 249 (373)
T ss_dssp SCCTTCCCHHHHHHHHHHH---T--------CCSCCEEETTCTTCHHHHHHHH--------T-------TCCSCEEEEES
T ss_pred ccCCCCccHHHHHHHHHhh---c--------CCCCEEEEccCcCcHHHHHHHH--------h-------CCCCeEEEEeC
Confidence 4445555566555554333 1 2347899999999999888864 1 12237999999
Q ss_pred CcchHHhhhhcCCC----CcceeeeccccccccccCCCCceeEEEecccee
Q 037735 90 SDNDFNTLFKSLPQ----SRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLH 136 (329)
Q Consensus 90 p~ndfn~lf~~l~~----~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alh 136 (329)
...+....-+++.. ..--|..+ ++.+..+|++++|+|+++-..+
T Consensus 250 s~~~l~~A~~n~~~~gl~~~i~~~~~---D~~~~~~~~~~fD~Ii~npPyg 297 (373)
T 3tm4_A 250 YRKHLIGAEMNALAAGVLDKIKFIQG---DATQLSQYVDSVDFAISNLPYG 297 (373)
T ss_dssp CHHHHHHHHHHHHHTTCGGGCEEEEC---CGGGGGGTCSCEEEEEEECCCC
T ss_pred CHHHHHHHHHHHHHcCCCCceEEEEC---ChhhCCcccCCcCEEEECCCCC
Confidence 88777665554321 12234444 5756557789999999975543
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.002 Score=59.76 Aligned_cols=101 Identities=8% Similarity=-0.055 Sum_probs=65.9
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--CC--cceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--QS--RSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~~--~~~f~~gvpgsFy 117 (329)
+..+|+|+|||+|+.|+.++. + ...+|+.+|+-..-+..+-+++. .. +-.+..|+ .
T Consensus 125 ~g~~VlD~~aG~G~~~i~~a~--------~--------g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D---~- 184 (278)
T 3k6r_A 125 PDELVVDMFAGIGHLSLPIAV--------Y--------GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMD---N- 184 (278)
T ss_dssp TTCEEEETTCTTTTTTHHHHH--------H--------TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSC---T-
T ss_pred CCCEEEEecCcCcHHHHHHHH--------h--------cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCc---H-
Confidence 347899999999999998864 2 11479999998766666655432 11 12234443 3
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
..+.+.+.+|.|+.. +|.. + ..||..-.+-|+|||++.+-.+...
T Consensus 185 ~~~~~~~~~D~Vi~~--------~p~~------------~---------------~~~l~~a~~~lk~gG~ih~~~~~~e 229 (278)
T 3k6r_A 185 RDFPGENIADRILMG--------YVVR------------T---------------HEFIPKALSIAKDGAIIHYHNTVPE 229 (278)
T ss_dssp TTCCCCSCEEEEEEC--------CCSS------------G---------------GGGHHHHHHHEEEEEEEEEEEEEEG
T ss_pred HHhccccCCCEEEEC--------CCCc------------H---------------HHHHHHHHHHcCCCCEEEEEeeecc
Confidence 233466788988743 3422 0 1456666778999999988766544
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00037 Score=67.26 Aligned_cols=114 Identities=15% Similarity=0.052 Sum_probs=72.8
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--CC--cceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--QS--RSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~~--~~~f~~gvpgsFy 117 (329)
+..+|+|+|||+|..|+.+.. . ...+|+..|+.......+-+++. .. +-.|+.+ ++.
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~--------~--------g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~---d~~ 277 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAI--------A--------GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVG---SAF 277 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHH--------T--------TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEES---CHH
T ss_pred CCCeEEEecCCCCHHHHHHHH--------C--------CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEC---CHH
Confidence 346899999999999998874 1 11379999998665555433321 11 2235554 443
Q ss_pred cccC----CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 118 SSLF----PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 118 ~~lf----p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
+.+. +.+++|+|++ ++|... .+...+ ....+++..++....+.|+|||.|++++
T Consensus 278 ~~~~~~~~~~~~fD~Vi~--------dpP~~~---------~~~~~~-----~~~~~~~~~~l~~~~~~LkpgG~lv~~~ 335 (396)
T 2as0_A 278 EEMEKLQKKGEKFDIVVL--------DPPAFV---------QHEKDL-----KAGLRAYFNVNFAGLNLVKDGGILVTCS 335 (396)
T ss_dssp HHHHHHHHTTCCEEEEEE--------CCCCSC---------SSGGGH-----HHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred HHHHHHHhhCCCCCEEEE--------CCCCCC---------CCHHHH-----HHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 3221 2678999986 344321 111111 2334677899999999999999999888
Q ss_pred ccc
Q 037735 194 FSV 196 (329)
Q Consensus 194 ~g~ 196 (329)
...
T Consensus 336 ~~~ 338 (396)
T 2as0_A 336 CSQ 338 (396)
T ss_dssp CCT
T ss_pred CCC
Confidence 643
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0011 Score=63.44 Aligned_cols=103 Identities=8% Similarity=-0.008 Sum_probs=68.0
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---Ccceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---SRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~~~~f~~gvpgsFy~ 118 (329)
+..+|+|+| |+|..++.+.. . .|..+|+..|+...+....-+++.. .+--|+. +++.+
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~--------~-------~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~---~D~~~ 232 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALML--------S-------GLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFT---FDLRK 232 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHH--------H-------TCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEEC---CCTTS
T ss_pred CCCEEEEEC-CCCHHHHHHHH--------h-------CCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEE---Chhhh
Confidence 357999999 99999988753 1 2335899999987666655443321 1223444 45644
Q ss_pred cc--CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceE-EEEecc
Q 037735 119 SL--FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLA-ALVMFS 195 (329)
Q Consensus 119 ~l--fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l-~~~~~g 195 (329)
-+ .+++++|+|+++.-+++. +...||+..++.|+|||++ ++++..
T Consensus 233 ~l~~~~~~~fD~Vi~~~p~~~~--------------------------------~~~~~l~~~~~~LkpgG~~~~~~~~~ 280 (373)
T 2qm3_A 233 PLPDYALHKFDTFITDPPETLE--------------------------------AIRAFVGRGIATLKGPRCAGYFGITR 280 (373)
T ss_dssp CCCTTTSSCBSEEEECCCSSHH--------------------------------HHHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred hchhhccCCccEEEECCCCchH--------------------------------HHHHHHHHHHHHcccCCeEEEEEEec
Confidence 23 134689999987544331 1368899999999999954 666654
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0013 Score=59.90 Aligned_cols=102 Identities=17% Similarity=0.094 Sum_probs=69.2
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC----Ccceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ----SRSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~----~~~~f~~gvpgsF 116 (329)
++..+|+|+|||+|..++.+.. . .|..+|+..|+....+...-+++.. .+--+.. |+.
T Consensus 20 ~~g~~VlDIGtGsG~l~i~la~--------~-------~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~---gD~ 81 (244)
T 3gnl_A 20 TKNERIADIGSDHAYLPCFAVK--------N-------QTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRK---GNG 81 (244)
T ss_dssp CSSEEEEEETCSTTHHHHHHHH--------T-------TSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEE---CSG
T ss_pred CCCCEEEEECCccHHHHHHHHH--------h-------CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEe---cch
Confidence 3458999999999999999875 2 2335899999988777776555421 1122344 356
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
++-+.|.+.+|+|++.-.- ..-+..+|....+-|+++|+|+++-
T Consensus 82 l~~~~~~~~~D~IviagmG---------------------------------g~lI~~IL~~~~~~L~~~~~lIlq~ 125 (244)
T 3gnl_A 82 LAVIEKKDAIDTIVIAGMG---------------------------------GTLIRTILEEGAAKLAGVTKLILQP 125 (244)
T ss_dssp GGGCCGGGCCCEEEEEEEC---------------------------------HHHHHHHHHHTGGGGTTCCEEEEEE
T ss_pred hhccCccccccEEEEeCCc---------------------------------hHHHHHHHHHHHHHhCCCCEEEEEc
Confidence 5666555569988863110 0123477888888899999999885
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0003 Score=65.57 Aligned_cols=100 Identities=11% Similarity=0.042 Sum_probs=58.2
Q ss_pred cchHHHhHHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEec
Q 037735 8 HSYASNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFN 87 (329)
Q Consensus 8 ~sY~~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~n 87 (329)
.+|.+|-..+..++..+...+. ..+..+|+|+|||+|..|..+.+ + ..+|+..
T Consensus 18 k~~Gq~fl~~~~i~~~i~~~~~----------~~~~~~VLDiG~G~G~lt~~La~--------~---------~~~v~~v 70 (299)
T 2h1r_A 18 YFQGQHLLKNPGILDKIIYAAK----------IKSSDIVLEIGCGTGNLTVKLLP--------L---------AKKVITI 70 (299)
T ss_dssp -----CEECCHHHHHHHHHHHC----------CCTTCEEEEECCTTSTTHHHHTT--------T---------SSEEEEE
T ss_pred hccccceecCHHHHHHHHHhcC----------CCCcCEEEEEcCcCcHHHHHHHh--------c---------CCEEEEE
Confidence 3455555555555555443322 23457899999999999998864 1 1479999
Q ss_pred CCCcchHHhhhhcCC--C-CcceeeeccccccccccCCCCceeEEEeccceeccc
Q 037735 88 DHSDNDFNTLFKSLP--Q-SRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLS 139 (329)
Q Consensus 88 DLp~ndfn~lf~~l~--~-~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs 139 (329)
|+.......+-+.+. . .+-.++. +++..- |..++|+|+++...+|.+
T Consensus 71 Di~~~~~~~a~~~~~~~~~~~v~~~~---~D~~~~--~~~~~D~Vv~n~py~~~~ 120 (299)
T 2h1r_A 71 DIDSRMISEVKKRCLYEGYNNLEVYE---GDAIKT--VFPKFDVCTANIPYKISS 120 (299)
T ss_dssp CSCHHHHHHHHHHHHHTTCCCEEC-------CCSS--CCCCCSEEEEECCGGGHH
T ss_pred ECCHHHHHHHHHHHHHcCCCceEEEE---CchhhC--CcccCCEEEEcCCccccc
Confidence 998766655543321 1 1122333 356432 334899999999988854
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0007 Score=65.37 Aligned_cols=112 Identities=14% Similarity=0.112 Sum_probs=69.6
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--CC---cceeeeccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--QS---RSYYAAGVPGSFY 117 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~~---~~~f~~gvpgsFy 117 (329)
..+|+|+|||+|..|+.+.. . . ..+|+..|+.......+-+++. .. +--|+.| ++.
T Consensus 221 ~~~VLDl~cG~G~~sl~la~--------~-------g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~---D~~ 281 (396)
T 3c0k_A 221 NKRVLNCFSYTGGFAVSALM--------G-------G-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRD---DVF 281 (396)
T ss_dssp TCEEEEESCTTCSHHHHHHH--------T-------T-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEES---CHH
T ss_pred CCeEEEeeccCCHHHHHHHH--------C-------C-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEEC---CHH
Confidence 36899999999999998874 1 1 1379999998766555433321 11 2235554 443
Q ss_pred cccC--C--CCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 118 SSLF--P--KSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 118 ~~lf--p--~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
+-+. + ..++|+|++. +|....++..+ ....+++..++....+.|+|||.+++++
T Consensus 282 ~~~~~~~~~~~~fD~Ii~d--------pP~~~~~~~~~--------------~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 339 (396)
T 3c0k_A 282 KLLRTYRDRGEKFDVIVMD--------PPKFVENKSQL--------------MGACRGYKDINMLAIQLLNEGGILLTFS 339 (396)
T ss_dssp HHHHHHHHTTCCEEEEEEC--------CSSTTTCSSSS--------------SCCCTHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHhcCCCCCEEEEC--------CCCCCCChhHH--------------HHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 3221 1 4689999873 44321111000 0112466788999999999999999987
Q ss_pred cc
Q 037735 194 FS 195 (329)
Q Consensus 194 ~g 195 (329)
..
T Consensus 340 ~~ 341 (396)
T 3c0k_A 340 CS 341 (396)
T ss_dssp CC
T ss_pred CC
Confidence 43
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00089 Score=65.72 Aligned_cols=129 Identities=15% Similarity=0.024 Sum_probs=69.2
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhc--CCCCccceEEecCCCcchHHhhhhcC--CCC---cceeeecccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHE--CPSAIEFQVFFNDHSDNDFNTLFKSL--PQS---RSYYAAGVPG 114 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~--~~~~pe~~v~~nDLp~ndfn~lf~~l--~~~---~~~f~~gvpg 114 (329)
...+|+|.|||||.....+.+.+. +..... ....+..+++..|+-.......-.++ ... ..-+..|
T Consensus 171 ~~~~VlDpacGsG~fl~~~~~~l~----~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~g--- 243 (445)
T 2okc_A 171 MGETVCDPACGTGGFLLTAYDYMK----GQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCE--- 243 (445)
T ss_dssp TTCCEEETTCTTCHHHHHHHHHHH----TCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEEC---
T ss_pred CCCEEeccCCCcchHHHHHHHHHH----HhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeC---
Confidence 346899999999999887765441 110000 00002357999999765554433222 111 1223333
Q ss_pred ccccccCCCCceeEEEecccee--cccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEE
Q 037735 115 SFYSSLFPKSSLHFVHSSYTLH--WLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALV 192 (329)
Q Consensus 115 sFy~~lfp~~s~dl~~Ss~alh--WLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~ 192 (329)
++.... +...+|+|+++--++ |-.+.+ +.+.......+. .-..|+++..+-|+|||++++.
T Consensus 244 D~l~~~-~~~~fD~Iv~NPPf~~~~~~~~~---~~~~~~~~~~~~-------------~~~~fl~~~~~~Lk~gG~~a~V 306 (445)
T 2okc_A 244 DSLEKE-PSTLVDVILANPPFGTRPAGSVD---INRPDFYVETKN-------------NQLNFLQHMMLMLKTGGRAAVV 306 (445)
T ss_dssp CTTTSC-CSSCEEEEEECCCSSCCCTTCCC---CCCTTSSSCCSC-------------HHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCCc-ccCCcCEEEECCCCCCcccccch---hhHhhcCCCCcc-------------hHHHHHHHHHHHhccCCEEEEE
Confidence 443332 234899999983332 211111 011111111111 1237899999999999999999
Q ss_pred ec
Q 037735 193 MF 194 (329)
Q Consensus 193 ~~ 194 (329)
++
T Consensus 307 ~p 308 (445)
T 2okc_A 307 LP 308 (445)
T ss_dssp EE
T ss_pred EC
Confidence 85
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0011 Score=61.49 Aligned_cols=108 Identities=13% Similarity=-0.021 Sum_probs=60.7
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC----cceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS----RSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~----~~~f~~gvpgsFy 117 (329)
...+|+|||||.|..|..++. + .+.-.+...|+-. |. ..+.++.. ...+.. +.+-
T Consensus 74 ~~~~VLDLGaAPGGWSQvAa~--------~-------~~~~~v~g~dVGv-Dl--~~~pi~~~~~g~~ii~~~---~~~d 132 (277)
T 3evf_A 74 LEGRVIDLGCGRGGWCYYAAA--------Q-------KEVSGVKGFTLGR-DG--HEKPMNVQSLGWNIITFK---DKTD 132 (277)
T ss_dssp CCEEEEEETCTTCHHHHHHHT--------S-------TTEEEEEEECCCC-TT--CCCCCCCCBTTGGGEEEE---CSCC
T ss_pred CCCEEEEecCCCCHHHHHHHH--------h-------cCCCcceeEEEec-cC--cccccccCcCCCCeEEEe---ccce
Confidence 346899999999999997764 1 1112344444431 21 00011100 111111 1121
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHh-hcHHHHHHHHHHHhccC-ceEEEEecc
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFN-NDFQTFLNTRAQELVPG-GLAALVMFS 195 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~-~D~~~FL~~ra~eL~pG-G~l~~~~~g 195 (329)
-+-++++.+|+|+|..+.+ +-.+ +.++++ -++ |....+.|+|| |.+++-+|-
T Consensus 133 v~~l~~~~~DlVlsD~apn--sG~~---------------------~~D~~rs~~L---L~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 133 IHRLEPVKCDTLLCDIGES--SSSS---------------------VTEGERTVRV---LDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp TTTSCCCCCSEEEECCCCC--CSCH---------------------HHHHHHHHHH---HHHHHHHHTTCCSEEEEEESC
T ss_pred ehhcCCCCccEEEecCccC--cCch---------------------HHHHHHHHHH---HHHHHHHhCCCCCeEEEEecC
Confidence 2347788999999998877 2211 111111 122 77788999999 999999886
Q ss_pred c
Q 037735 196 V 196 (329)
Q Consensus 196 ~ 196 (329)
+
T Consensus 187 p 187 (277)
T 3evf_A 187 P 187 (277)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0046 Score=60.48 Aligned_cols=73 Identities=11% Similarity=-0.016 Sum_probs=47.6
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--C-Ccceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--Q-SRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~-~~~~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|..|+.+.. . ..+|+..|.........-++.. . .+-.|..|.-.++..
T Consensus 286 ~~~~VLDlgcG~G~~~~~la~--------~---------~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~ 348 (433)
T 1uwv_A 286 PEDRVLDLFCGMGNFTLPLAT--------Q---------AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVT 348 (433)
T ss_dssp TTCEEEEESCTTTTTHHHHHT--------T---------SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCS
T ss_pred CCCEEEECCCCCCHHHHHHHh--------h---------CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhh
Confidence 346899999999999999874 1 1479999998766555443331 1 123466654333222
Q ss_pred c-cCCCCceeEEEe
Q 037735 119 S-LFPKSSLHFVHS 131 (329)
Q Consensus 119 ~-lfp~~s~dl~~S 131 (329)
. .++++++|++++
T Consensus 349 ~~~~~~~~fD~Vv~ 362 (433)
T 1uwv_A 349 KQPWAKNGFDKVLL 362 (433)
T ss_dssp SSGGGTTCCSEEEE
T ss_pred hhhhhcCCCCEEEE
Confidence 2 256788999997
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00038 Score=64.39 Aligned_cols=73 Identities=10% Similarity=-0.049 Sum_probs=49.8
Q ss_pred EEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccCCCC
Q 037735 45 RIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLFPKS 124 (329)
Q Consensus 45 ~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lfp~~ 124 (329)
+|+|+|||+|..|..+.+ + . .+|+..|+-..+...+-+.++..+--++. |+++.--+++.
T Consensus 49 ~VLEIG~G~G~lt~~L~~--------~--------~-~~V~avEid~~~~~~l~~~~~~~~v~vi~---~D~l~~~~~~~ 108 (271)
T 3fut_A 49 PVFEVGPGLGALTRALLE--------A--------G-AEVTAIEKDLRLRPVLEETLSGLPVRLVF---QDALLYPWEEV 108 (271)
T ss_dssp CEEEECCTTSHHHHHHHH--------T--------T-CCEEEEESCGGGHHHHHHHTTTSSEEEEE---SCGGGSCGGGS
T ss_pred eEEEEeCchHHHHHHHHH--------c--------C-CEEEEEECCHHHHHHHHHhcCCCCEEEEE---CChhhCChhhc
Confidence 999999999999999985 1 1 47999999887777766655532223444 46655445432
Q ss_pred -ceeEEEeccceec
Q 037735 125 -SLHFVHSSYTLHW 137 (329)
Q Consensus 125 -s~dl~~Ss~alhW 137 (329)
..|.++++.-.+.
T Consensus 109 ~~~~~iv~NlPy~i 122 (271)
T 3fut_A 109 PQGSLLVANLPYHI 122 (271)
T ss_dssp CTTEEEEEEECSSC
T ss_pred cCccEEEecCcccc
Confidence 5678887765444
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0015 Score=63.99 Aligned_cols=67 Identities=13% Similarity=0.065 Sum_probs=44.1
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--Ccceeeecccccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--SRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--~~~~f~~gvpgsFy~~l 120 (329)
..+|+|+|||+|..|+.+.. . ..+|+..|.........-++... ..--|..| ++. .+
T Consensus 291 ~~~VLDlgcG~G~~sl~la~--------~---------~~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~---d~~-~~ 349 (425)
T 2jjq_A 291 GEKILDMYSGVGTFGIYLAK--------R---------GFNVKGFDSNEFAIEMARRNVEINNVDAEFEVA---SDR-EV 349 (425)
T ss_dssp SSEEEEETCTTTHHHHHHHH--------T---------TCEEEEEESCHHHHHHHHHHHHHHTCCEEEEEC---CTT-TC
T ss_pred CCEEEEeeccchHHHHHHHH--------c---------CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEC---ChH-Hc
Confidence 46899999999999998864 1 13799999987666555443321 11234544 453 33
Q ss_pred CCCCceeEEEe
Q 037735 121 FPKSSLHFVHS 131 (329)
Q Consensus 121 fp~~s~dl~~S 131 (329)
++. ++|++++
T Consensus 350 ~~~-~fD~Vv~ 359 (425)
T 2jjq_A 350 SVK-GFDTVIV 359 (425)
T ss_dssp CCT-TCSEEEE
T ss_pred Ccc-CCCEEEE
Confidence 444 8999987
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00068 Score=68.74 Aligned_cols=80 Identities=13% Similarity=0.220 Sum_probs=55.4
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CCCcceeeeccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQSRSYYAAGVPGSFY 117 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~~~~~f~~gvpgsFy 117 (329)
..+.+|||+|||+|.+|..+.. . ..+|+.-|+........-... +....-|..+ +..
T Consensus 65 ~~~~~vLDvGCG~G~~~~~la~--------~---------ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~---~~~ 124 (569)
T 4azs_A 65 GRPLNVLDLGCAQGFFSLSLAS--------K---------GATIVGIDFQQENINVCRALAEENPDFAAEFRVG---RIE 124 (569)
T ss_dssp TSCCEEEEETCTTSHHHHHHHH--------T---------TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEEC---CHH
T ss_pred CCCCeEEEECCCCcHHHHHHHh--------C---------CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEEC---CHH
Confidence 4578999999999999998874 1 258999999987665432221 1111234444 342
Q ss_pred cc--cCCCCceeEEEeccceecccC
Q 037735 118 SS--LFPKSSLHFVHSSYTLHWLSK 140 (329)
Q Consensus 118 ~~--lfp~~s~dl~~Ss~alhWLs~ 140 (329)
+- .++++++|+|++.-.||++.+
T Consensus 125 ~~~~~~~~~~fD~v~~~e~~ehv~~ 149 (569)
T 4azs_A 125 EVIAALEEGEFDLAIGLSVFHHIVH 149 (569)
T ss_dssp HHHHHCCTTSCSEEEEESCHHHHHH
T ss_pred HHhhhccCCCccEEEECcchhcCCC
Confidence 22 256789999999999999764
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0019 Score=67.22 Aligned_cols=115 Identities=11% Similarity=0.046 Sum_probs=71.9
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC-----CCCcceeeeccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL-----PQSRSYYAAGVPGSFY 117 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l-----~~~~~~f~~gvpgsFy 117 (329)
..+|||+|||||..|+.++. . .. .+|+..|+.......+-+++ ...+--|+.+ +.+
T Consensus 540 g~~VLDlg~GtG~~sl~aa~--------~-------ga-~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~---D~~ 600 (703)
T 3v97_A 540 GKDFLNLFSYTGSATVHAGL--------G-------GA-RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQA---DCL 600 (703)
T ss_dssp TCEEEEESCTTCHHHHHHHH--------T-------TC-SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEES---CHH
T ss_pred CCcEEEeeechhHHHHHHHH--------C-------CC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEec---CHH
Confidence 36899999999999988763 1 12 36999999876666554432 1112335554 444
Q ss_pred ccc-CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 118 SSL-FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 118 ~~l-fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
+-+ ...+++|+|++ ++|.-..++ ....+ .+..+|...++....+-|+|||+|++++..+
T Consensus 601 ~~l~~~~~~fD~Ii~--------DPP~f~~~~-------~~~~~-----~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~~ 660 (703)
T 3v97_A 601 AWLREANEQFDLIFI--------DPPTFSNSK-------RMEDA-----FDVQRDHLALMKDLKRLLRAGGTIMFSNNKR 660 (703)
T ss_dssp HHHHHCCCCEEEEEE--------CCCSBC--------------C-----CBHHHHHHHHHHHHHHHEEEEEEEEEEECCT
T ss_pred HHHHhcCCCccEEEE--------CCccccCCc-------cchhH-----HHHHHHHHHHHHHHHHhcCCCcEEEEEECCc
Confidence 433 24678999986 344220000 00000 1234577889999999999999999887543
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0014 Score=61.95 Aligned_cols=97 Identities=12% Similarity=0.121 Sum_probs=65.6
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--C--Ccceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--Q--SRSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~--~~~~f~~gvpgsFy 117 (329)
+..+|+|+|||+|..|+. .+ ...+|+..|+.......+-+++. . .+--|+.| ++.
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~-----------------~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~---D~~ 253 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CK-----------------NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILS---DVR 253 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TT-----------------TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES---CGG
T ss_pred CCCEEEEccCccCHHHHh-cc-----------------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC---ChH
Confidence 346899999999999887 53 12489999998766665544431 1 12335554 343
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
+-+ +++|++++. +|.. ...|+....+.|+|||++++..+...
T Consensus 254 ~~~---~~fD~Vi~d--------pP~~---------------------------~~~~l~~~~~~L~~gG~l~~~~~~~~ 295 (336)
T 2yx1_A 254 EVD---VKGNRVIMN--------LPKF---------------------------AHKFIDKALDIVEEGGVIHYYTIGKD 295 (336)
T ss_dssp GCC---CCEEEEEEC--------CTTT---------------------------GGGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred Hhc---CCCcEEEEC--------CcHh---------------------------HHHHHHHHHHHcCCCCEEEEEEeecC
Confidence 333 789999863 3421 01568888899999999999887755
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0021 Score=66.19 Aligned_cols=129 Identities=13% Similarity=0.110 Sum_probs=75.8
Q ss_pred HHHhHHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCC
Q 037735 11 ASNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHS 90 (329)
Q Consensus 11 ~~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp 90 (329)
-+....|+++..++.+++.+.- ...+..+|+|+|||+|+++...+++.- +. .-.+.||..+-.
T Consensus 332 vKy~~Ye~AI~~Al~d~~~~~~------~~~~~~vVldVGaGrGpLv~~al~A~a----~~-------~~~vkVyAVEkn 394 (637)
T 4gqb_A 332 IKYSQYQQAIYKCLLDRVPEEE------KDTNVQVLMVLGAGRGPLVNASLRAAK----QA-------DRRIKLYAVEKN 394 (637)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGG------TTTCEEEEEEESCTTSHHHHHHHHHHH----HT-------TCEEEEEEEESC
T ss_pred hhHHHHHHHHHHHHHHhhhhcc------ccCCCcEEEEECCCCcHHHHHHHHHHH----hc-------CCCcEEEEEECC
Confidence 3667778888777776554321 134567899999999999887776441 11 123678887764
Q ss_pred cchHHhhhhcCC----CCcceeeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHH
Q 037735 91 DNDFNTLFKSLP----QSRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAA 166 (329)
Q Consensus 91 ~ndfn~lf~~l~----~~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~ 166 (329)
.|-..++ +.+. .++-..+ .|+. +.+-++..+|+++| -|+-..-. | .+
T Consensus 395 p~A~~a~-~~v~~N~~~dkVtVI---~gd~-eev~LPEKVDIIVS----EwMG~fLl---~-------E~---------- 445 (637)
T 4gqb_A 395 PNAVVTL-ENWQFEEWGSQVTVV---SSDM-REWVAPEKADIIVS----ELLGSFAD---N-------EL---------- 445 (637)
T ss_dssp HHHHHHH-HHHHHHTTGGGEEEE---ESCT-TTCCCSSCEEEEEC----CCCBTTBG---G-------GC----------
T ss_pred HHHHHHH-HHHHhccCCCeEEEE---eCcc-eeccCCcccCEEEE----EcCccccc---c-------cC----------
Confidence 3322221 1110 1111233 3456 55555678999998 34432210 0 11
Q ss_pred HHhhcHHHHHHHHHHHhccCceEE
Q 037735 167 QFNNDFQTFLNTRAQELVPGGLAA 190 (329)
Q Consensus 167 q~~~D~~~FL~~ra~eL~pGG~l~ 190 (329)
+-..|.+|-+-|+|||.|+
T Consensus 446 -----mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 446 -----SPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp -----HHHHHHHHGGGEEEEEEEE
T ss_pred -----CHHHHHHHHHhcCCCcEEc
Confidence 1244788899999999974
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00096 Score=61.01 Aligned_cols=43 Identities=14% Similarity=0.046 Sum_probs=32.2
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL 101 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l 101 (329)
+..+|+|+|||+|..|..+.. + ..+|+..|+-..+...+-+.+
T Consensus 29 ~~~~VLEIG~G~G~lt~~La~--------~---------~~~V~avEid~~~~~~~~~~~ 71 (255)
T 3tqs_A 29 KTDTLVEIGPGRGALTDYLLT--------E---------CDNLALVEIDRDLVAFLQKKY 71 (255)
T ss_dssp TTCEEEEECCTTTTTHHHHTT--------T---------SSEEEEEECCHHHHHHHHHHH
T ss_pred CcCEEEEEcccccHHHHHHHH--------h---------CCEEEEEECCHHHHHHHHHHH
Confidence 457899999999999999974 1 137888888776666554444
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.017 Score=58.37 Aligned_cols=141 Identities=13% Similarity=0.178 Sum_probs=72.0
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC--CCCcceeeeccccccc-
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL--PQSRSYYAAGVPGSFY- 117 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l--~~~~~~f~~gvpgsFy- 117 (329)
+.+.+|+|.+||||.+...+...+.+.-...-..........+++..|+-.....-.-.++ .....-+ .-.-|+++
T Consensus 243 p~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i-~i~~gDtL~ 321 (544)
T 3khk_A 243 PYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNF-GKKNADSFL 321 (544)
T ss_dssp CCSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBC-CSSSCCTTT
T ss_pred cCCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCccc-ceeccchhc
Confidence 3445999999999988777765443221110000000001368999999765544432222 1101111 00223443
Q ss_pred cccCCCCceeEEEec--cce-ecccCCCCCCCCccceeecC-------CcHHHHHHHHHHHhhcHHHHHHHHHHHhccCc
Q 037735 118 SSLFPKSSLHFVHSS--YTL-HWLSKVPKVDGVEGSIQTRR-------FVNEVMEAYAAQFNNDFQTFLNTRAQELVPGG 187 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss--~al-hWLs~~p~~~~n~g~i~~~~-------~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG 187 (329)
...++...+|+|+++ +.. .|-......+ .+..+.. .++. ...|+ .|+.+..+-|+|||
T Consensus 322 ~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d---~r~~~g~~~~~~~~~~~~--------~~~~~-~Fl~~~l~~Lk~gG 389 (544)
T 3khk_A 322 DDQHPDLRADFVMTNPPFNMKDWWHEKLADD---PRWTINTNGEKRILTPPT--------GNANF-AWMLHMLYHLAPTG 389 (544)
T ss_dssp SCSCTTCCEEEEEECCCSSCCSCCCGGGTTC---GGGEECCC--CEECCCCT--------TCTHH-HHHHHHHHTEEEEE
T ss_pred CcccccccccEEEECCCcCCccccchhhhhh---hhhhcCcccccccccCCC--------cchhH-HHHHHHHHHhccCc
Confidence 334677899999996 332 3533211000 0100000 0100 01122 68999999999999
Q ss_pred eEEEEec
Q 037735 188 LAALVMF 194 (329)
Q Consensus 188 ~l~~~~~ 194 (329)
++++.++
T Consensus 390 r~aiVlP 396 (544)
T 3khk_A 390 SMALLLA 396 (544)
T ss_dssp EEEEEEE
T ss_pred eEEEEec
Confidence 9999984
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.011 Score=54.98 Aligned_cols=107 Identities=15% Similarity=0.046 Sum_probs=62.2
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---C-c-ceeeecccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---S-R-SYYAAGVPGSF 116 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~-~-~~f~~gvpgsF 116 (329)
...+|+|||||.|..|..++. + .+...++..|+-.+. ....++. . . .++..++ +.
T Consensus 90 ~~~~VLDLGaAPGGWsQvAa~--------~-------~gv~sV~GvdvG~d~---~~~pi~~~~~g~~ii~~~~~~--dv 149 (282)
T 3gcz_A 90 PTGIVVDLGCGRGGWSYYAAS--------L-------KNVKKVMAFTLGVQG---HEKPIMRTTLGWNLIRFKDKT--DV 149 (282)
T ss_dssp CCEEEEEETCTTCHHHHHHHT--------S-------TTEEEEEEECCCCTT---SCCCCCCCBTTGGGEEEECSC--CG
T ss_pred CCCEEEEeCCCCCHHHHHHHH--------h-------cCCCeeeeEEeccCc---cccccccccCCCceEEeeCCc--ch
Confidence 346899999999999998763 1 122346666765431 0111110 0 0 1122221 22
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccC--ceEEEEec
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPG--GLAALVMF 194 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pG--G~l~~~~~ 194 (329)
.-++++.+|+|+|-.|.+ +-.+ .+ +.+.. -++ |....+.|+|| |.+++-+|
T Consensus 150 --~~l~~~~~DvVLSDmApn--sG~~----------------~~-D~~rs---~~L---L~~A~~~Lk~g~~G~Fv~KvF 202 (282)
T 3gcz_A 150 --FNMEVIPGDTLLCDIGES--SPSI----------------AV-EEQRT---LRV---LNCAKQWLQEGNYTEFCIKVL 202 (282)
T ss_dssp --GGSCCCCCSEEEECCCCC--CSCH----------------HH-HHHHH---HHH---HHHHHHHHHHHCCCEEEEEES
T ss_pred --hhcCCCCcCEEEecCccC--CCCh----------------HH-HHHHH---HHH---HHHHHHHcCCCCCCcEEEEEe
Confidence 236778999999988876 3221 11 11111 122 77778899999 99999987
Q ss_pred c
Q 037735 195 S 195 (329)
Q Consensus 195 g 195 (329)
-
T Consensus 203 ~ 203 (282)
T 3gcz_A 203 C 203 (282)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0097 Score=55.79 Aligned_cols=73 Identities=14% Similarity=0.099 Sum_probs=46.4
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~f~~gvpgsFy~ 118 (329)
...+|+|+|||+|.-|..+...+ .+..+|+.+|+.......+-+++. -..-.++.+ ++.+
T Consensus 102 ~g~~VLDlcaG~G~kt~~la~~~--------------~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~---D~~~ 164 (309)
T 2b9e_A 102 PGSHVIDACAAPGNKTSHLAALL--------------KNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEE---DFLA 164 (309)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHH--------------TTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEEC---CGGG
T ss_pred CCCEEEEeCCChhHHHHHHHHHh--------------CCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeC---ChHh
Confidence 34689999999999999987632 223589999998877776655542 111234443 4432
Q ss_pred ccCC---CCceeEEEe
Q 037735 119 SLFP---KSSLHFVHS 131 (329)
Q Consensus 119 ~lfp---~~s~dl~~S 131 (329)
-... .+++|.|+.
T Consensus 165 ~~~~~~~~~~fD~Vl~ 180 (309)
T 2b9e_A 165 VSPSDPRYHEVHYILL 180 (309)
T ss_dssp SCTTCGGGTTEEEEEE
T ss_pred cCccccccCCCCEEEE
Confidence 2111 146898874
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.004 Score=57.62 Aligned_cols=45 Identities=13% Similarity=0.081 Sum_probs=32.6
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCc-cceEEecCCCcchHHhhhhc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAI-EFQVFFNDHSDNDFNTLFKS 100 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~p-e~~v~~nDLp~ndfn~lf~~ 100 (329)
...+|+|+|||+|..|..+.... .. ..+|+..|+-..+...+-+.
T Consensus 42 ~~~~VLEIG~G~G~lt~~La~~~--------------~~~~~~V~avDid~~~l~~a~~~ 87 (279)
T 3uzu_A 42 RGERMVEIGPGLGALTGPVIARL--------------ATPGSPLHAVELDRDLIGRLEQR 87 (279)
T ss_dssp TTCEEEEECCTTSTTHHHHHHHH--------------CBTTBCEEEEECCHHHHHHHHHH
T ss_pred CcCEEEEEccccHHHHHHHHHhC--------------CCcCCeEEEEECCHHHHHHHHHh
Confidence 45789999999999999998622 11 13589999987666655443
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.073 Score=56.23 Aligned_cols=123 Identities=13% Similarity=0.061 Sum_probs=70.8
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhh--hhcCC------CCcceeeeccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTL--FKSLP------QSRSYYAAGVP 113 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~l--f~~l~------~~~~~f~~gvp 113 (329)
...+|+|.|||||.....+...+ .. ....+++..|+-....... -.++. ......+. .
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l--------~e----i~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~--~ 386 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGF--------NN----VMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTIT--G 386 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTS--------TT----CCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEE--C
T ss_pred CCCEEEECCCCccHHHHHHHHHh--------cc----cCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEE--e
Confidence 45799999999999877765421 11 1125899999976554433 11111 11111121 2
Q ss_pred ccccc-ccCCCCceeEEEeccceecccCCCCCCCCccceeec-CCcHHHHHHHHHHHhh-------------c-HHHHHH
Q 037735 114 GSFYS-SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTR-RFVNEVMEAYAAQFNN-------------D-FQTFLN 177 (329)
Q Consensus 114 gsFy~-~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~-~~~~~~~~ay~~q~~~-------------D-~~~FL~ 177 (329)
+++.. ...+...+|+|+++ +| |.. ...+...+.|...+.. | ...|+.
T Consensus 387 dD~L~~~~~~~~kFDVVIgN--------PP---------Yg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe 449 (878)
T 3s1s_A 387 EDVCSLNPEDFANVSVVVMN--------PP---------YVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLE 449 (878)
T ss_dssp CCGGGCCGGGGTTEEEEEEC--------CB---------CCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHH
T ss_pred cchhcccccccCCCCEEEEC--------CC---------ccccccchhhhhhHHHHhhhhccccccccccccchHHHHHH
Confidence 34543 12456789999986 44 111 1122222333222211 2 567999
Q ss_pred HHHHHhccCceEEEEecc
Q 037735 178 TRAQELVPGGLAALVMFS 195 (329)
Q Consensus 178 ~ra~eL~pGG~l~~~~~g 195 (329)
+..+-|+|||++++.++.
T Consensus 450 ~Al~lLKpGGrLAfIlP~ 467 (878)
T 3s1s_A 450 LVTELVQDGTVISAIMPK 467 (878)
T ss_dssp HHHHHSCTTCEEEEEEET
T ss_pred HHHHhcCCCcEEEEEECh
Confidence 999999999999999863
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=95.90 E-value=0.009 Score=54.34 Aligned_cols=80 Identities=10% Similarity=-0.078 Sum_probs=49.0
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcc-eeeecccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRS-YYAAGVPGSFYSSL 120 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~-~f~~gvpgsFy~~l 120 (329)
+..+|+|+|||+|..|. + . + .+..+|+..|+-..+...+-+.+....+ .++.| ++..--
T Consensus 21 ~~~~VLEIG~G~G~lt~-l-~--------~-------~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~---D~~~~~ 80 (252)
T 1qyr_A 21 KGQAMVEIGPGLAALTE-P-V--------G-------ERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQ---DAMTFN 80 (252)
T ss_dssp TTCCEEEECCTTTTTHH-H-H--------H-------TTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECS---CGGGCC
T ss_pred CcCEEEEECCCCcHHHH-h-h--------h-------CCCCeEEEEECCHHHHHHHHHHhccCCceEEEEC---chhhCC
Confidence 34689999999999999 4 2 1 1113499999987776666555432212 24443 454322
Q ss_pred CCC-----CceeEEEeccc--------eecccCC
Q 037735 121 FPK-----SSLHFVHSSYT--------LHWLSKV 141 (329)
Q Consensus 121 fp~-----~s~dl~~Ss~a--------lhWLs~~ 141 (329)
+|+ +..+.++|+.- +|||.+.
T Consensus 81 ~~~~~~~~~~~~~vvsNlPY~i~~~il~~ll~~~ 114 (252)
T 1qyr_A 81 FGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYT 114 (252)
T ss_dssp HHHHHHHHTSCEEEEEECCTTTHHHHHHHHHTTG
T ss_pred HHHhhcccCCceEEEECCCCCccHHHHHHHHhcC
Confidence 221 23578888865 6787653
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0023 Score=58.19 Aligned_cols=43 Identities=14% Similarity=0.110 Sum_probs=32.9
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKS 100 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~ 100 (329)
+..+|+|+|||+|..|..+.+ .+..+|+..|+-......+-+.
T Consensus 31 ~~~~VLDiG~G~G~lt~~L~~----------------~~~~~v~avEid~~~~~~~~~~ 73 (249)
T 3ftd_A 31 EGNTVVEVGGGTGNLTKVLLQ----------------HPLKKLYVIELDREMVENLKSI 73 (249)
T ss_dssp TTCEEEEEESCHHHHHHHHTT----------------SCCSEEEEECCCHHHHHHHTTS
T ss_pred CcCEEEEEcCchHHHHHHHHH----------------cCCCeEEEEECCHHHHHHHHhc
Confidence 456899999999999999874 2225899999987766665544
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.011 Score=57.02 Aligned_cols=43 Identities=16% Similarity=0.168 Sum_probs=32.2
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKS 100 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~ 100 (329)
..+|+|+|||+|..++.+...+ +..+|+.+|+-......+-++
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~---------------~~~~V~avDi~~~av~~a~~N 90 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALET---------------PAEEVWLNDISEDAYELMKRN 90 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHS---------------SCSEEEEEESCHHHHHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhC---------------CCCeEEEEECCHHHHHHHHHH
Confidence 4689999999999999987521 224799999987665555443
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.012 Score=59.51 Aligned_cols=127 Identities=13% Similarity=-0.038 Sum_probs=68.5
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCC-------CccceEEecCCCcchHHhhhhcC--CCCc------c
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPS-------AIEFQVFFNDHSDNDFNTLFKSL--PQSR------S 106 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~-------~pe~~v~~nDLp~ndfn~lf~~l--~~~~------~ 106 (329)
...+|+|.+||||.+...+.+.+. +........ ....+++..|+-.....-.-.++ .... .
T Consensus 169 ~~~~VlDPaCGSG~fLi~a~~~l~----~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~ 244 (541)
T 2ar0_A 169 PREVVQDPAAGTAGFLIEADRYVK----SQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGG 244 (541)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHH----TTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTB
T ss_pred CCCeEecCCcccchHHHHHHHHHH----HhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccC
Confidence 357999999999999888776442 111000000 01247899998655544432221 1111 1
Q ss_pred eeeeccccccccc-cCCCCceeEEEecc--ceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHh
Q 037735 107 YYAAGVPGSFYSS-LFPKSSLHFVHSSY--TLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQEL 183 (329)
Q Consensus 107 ~f~~gvpgsFy~~-lfp~~s~dl~~Ss~--alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL 183 (329)
-+..| ++... ..+...+|+|+++= ...|-.+ ...++. ...+. .| ..|+....+-|
T Consensus 245 ~I~~g---DtL~~~~~~~~~fD~Vv~NPPf~~~~~~~-~~~~~~-----~~~~~------------~~-~~Fl~~~l~~L 302 (541)
T 2ar0_A 245 AIRLG---NTLGSDGENLPKAHIVATNPPFGSAAGTN-ITRTFV-----HPTSN------------KQ-LCFMQHIIETL 302 (541)
T ss_dssp SEEES---CTTSHHHHTSCCEEEEEECCCCTTCSSCC-CCSCCS-----SCCSC------------HH-HHHHHHHHHHE
T ss_pred CeEeC---CCcccccccccCCeEEEECCCcccccchh-hHhhcC-----CCCCc------------hH-HHHHHHHHHHh
Confidence 23333 33332 24567899999872 2222111 000110 00011 12 27899999999
Q ss_pred ccCceEEEEec
Q 037735 184 VPGGLAALVMF 194 (329)
Q Consensus 184 ~pGG~l~~~~~ 194 (329)
+|||++++.++
T Consensus 303 k~gGr~a~V~p 313 (541)
T 2ar0_A 303 HPGGRAAVVVP 313 (541)
T ss_dssp EEEEEEEEEEE
T ss_pred CCCCEEEEEec
Confidence 99999999985
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.053 Score=54.71 Aligned_cols=125 Identities=15% Similarity=0.188 Sum_probs=73.0
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC--CC---Ccceeeecccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL--PQ---SRSYYAAGVPGSF 116 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l--~~---~~~~f~~gvpgsF 116 (329)
...+|+|.+||||.+...+.+.+ .. .+..+++..|+-...+.-.-.++ .. ...-... |++
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l--------~~----~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~---gDt 285 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYS--------RQ----PQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHN---ADT 285 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHC--------SC----TTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEE---SCT
T ss_pred CCCEEeecccchhHHHHHHHHHH--------Hh----ccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEe---cce
Confidence 45799999999999988877533 10 12468999999765544433221 11 1111233 345
Q ss_pred ccc---cCCCCceeEEEec--cceecccCCCCC-C--CC-ccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhc-cC
Q 037735 117 YSS---LFPKSSLHFVHSS--YTLHWLSKVPKV-D--GV-EGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELV-PG 186 (329)
Q Consensus 117 y~~---lfp~~s~dl~~Ss--~alhWLs~~p~~-~--~n-~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~-pG 186 (329)
+.. .++...+|+|+++ |...|-...... + |. -|.+ ++ ....|+ .|+.+..+-|+ ||
T Consensus 286 L~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~-----~~--------~s~~~~-~Fl~~~l~~Lk~~g 351 (542)
T 3lkd_A 286 LDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKL-----AP--------KSKADF-AFLLHGYYHLKQDN 351 (542)
T ss_dssp TTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSC-----CC--------TTCCHH-HHHHHHHHTBCTTT
T ss_pred ecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhc-----CC--------CchhhH-HHHHHHHHHhCCCc
Confidence 444 2567889999998 555562110000 0 11 0100 00 011233 69999999999 99
Q ss_pred ceEEEEecc
Q 037735 187 GLAALVMFS 195 (329)
Q Consensus 187 G~l~~~~~g 195 (329)
|++++.++.
T Consensus 352 Gr~a~VlP~ 360 (542)
T 3lkd_A 352 GVMAIVLPH 360 (542)
T ss_dssp CEEEEEEET
T ss_pred eeEEEEecc
Confidence 999999863
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0093 Score=61.99 Aligned_cols=107 Identities=14% Similarity=0.071 Sum_probs=59.6
Q ss_pred HHHhHHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCC
Q 037735 11 ASNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHS 90 (329)
Q Consensus 11 ~~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp 90 (329)
.+....|+++..+++++..+ ..+..+|+|+|||+|+++...+.+.-.+ ..+++.. .......||..+-.
T Consensus 387 vRy~~Y~~AI~~al~d~~~~---------~~~~~VVldVGaGtGpLs~~al~A~~~a-~~~~~~~-~~~~~~kVyAVEkn 455 (745)
T 3ua3_A 387 IKYDVYGEAVVGALKDLGAD---------GRKTVVIYLLGGGRGPIGTKILKSEREY-NNTFRQG-QESLKVKLYIVEKN 455 (745)
T ss_dssp HHHHHHHHHHHHHHHHHHTT---------CCSEEEEEEESCTTCHHHHHHHHHHHHH-HHHHSTT-SCCCEEEEEEEECC
T ss_pred hhHHHHHHHHHHHHHHhhcc---------cCCCcEEEEECCCCCHHHHHHHHHHHHh-Ccccccc-ccccccEEEEEeCC
Confidence 45666777777766665431 1346789999999999988776544211 1011110 01123689998885
Q ss_pred cchHHhhhhc----CCCCcceeeeccccccccccCC-----CCceeEEEec
Q 037735 91 DNDFNTLFKS----LPQSRSYYAAGVPGSFYSSLFP-----KSSLHFVHSS 132 (329)
Q Consensus 91 ~ndfn~lf~~----l~~~~~~f~~gvpgsFy~~lfp-----~~s~dl~~Ss 132 (329)
.|-.-++-+. +.+ +-..+. |+..+--+| +..+|+++|=
T Consensus 456 p~A~~~l~~~~~Ng~~d-~VtVI~---gd~eev~lp~~~~~~ekVDIIVSE 502 (745)
T 3ua3_A 456 PNAIVTLKYMNVRTWKR-RVTIIE---SDMRSLPGIAKDRGFEQPDIIVSE 502 (745)
T ss_dssp HHHHHHHHHHHHHTTTT-CSEEEE---SCGGGHHHHHHHTTCCCCSEEEEC
T ss_pred hHHHHHHHHHHhcCCCC-eEEEEe---CchhhcccccccCCCCcccEEEEe
Confidence 5444343222 211 222333 345222254 6789999984
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.059 Score=50.32 Aligned_cols=111 Identities=13% Similarity=0.098 Sum_probs=62.9
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHH-hh-hhcCCCCcceeeecccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFN-TL-FKSLPQSRSYYAAGVPGSFYS 118 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn-~l-f~~l~~~~~~f~~gvpgsFy~ 118 (329)
.+..+|+|||||+|..|..+++. .+-..|+..|+..++-. .. ...+...-..+-.++ +++
T Consensus 80 ~~g~~vlDLGaaPGgWsqva~~~---------------~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~--di~- 141 (300)
T 3eld_A 80 RITGRVLDLGCGRGGWSYYAAAQ---------------KEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKS--NVF- 141 (300)
T ss_dssp CCCEEEEEETCTTCHHHHHHHTS---------------TTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSC--CTT-
T ss_pred CCCCEEEEcCCCCCHHHHHHHHh---------------cCCceeeeEEeccccccccccccccCCceEEeecCc--eee-
Confidence 45689999999999999998741 11135666777543200 00 000000001112222 332
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccC-ceEEEEecc
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPG-GLAALVMFS 195 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pG-G~l~~~~~g 195 (329)
-++++.+|+++|-.|-+ +-.+ + ...|.. .++ |....+.|+|| |.+++-+|-
T Consensus 142 -~l~~~~~DlVlsD~APn--sG~~----------------~-~D~~rs---~~L---L~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 142 -TMPTEPSDTLLCDIGES--SSNP----------------L-VERDRT---MKV---LENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp -TSCCCCCSEEEECCCCC--CSSH----------------H-HHHHHH---HHH---HHHHHHHCCTTCCEEEEEESS
T ss_pred -ecCCCCcCEEeecCcCC--CCCH----------------H-HHHHHH---HHH---HHHHHHHhcCCCCcEEEEecc
Confidence 25667899999987655 2211 1 122211 122 77778899999 999999876
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.011 Score=57.22 Aligned_cols=87 Identities=7% Similarity=-0.062 Sum_probs=50.3
Q ss_pred CceEEEeeeCCCCcccHHHHHHHH-----------------------HHHHHHhhhcCCCCccceEEecCCCcchHHhhh
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNII-----------------------DSVELKFQHECPSAIEFQVFFNDHSDNDFNTLF 98 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii-----------------------~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf 98 (329)
+..+|+|.+||||...+.+..... +.+++.........++.+|+..|....+....-
T Consensus 201 ~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar 280 (393)
T 3k0b_A 201 PDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAK 280 (393)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHH
Confidence 346899999999998877654221 111111111111133467999999877766654
Q ss_pred hcCC---CC-cceeeeccccccccccCCCCceeEEEec
Q 037735 99 KSLP---QS-RSYYAAGVPGSFYSSLFPKSSLHFVHSS 132 (329)
Q Consensus 99 ~~l~---~~-~~~f~~gvpgsFy~~lfp~~s~dl~~Ss 132 (329)
+++. -. ...|..+ ++.+ +.++.++|+|+|+
T Consensus 281 ~Na~~~gl~~~I~~~~~---D~~~-~~~~~~fD~Iv~N 314 (393)
T 3k0b_A 281 QNAVEAGLGDLITFRQL---QVAD-FQTEDEYGVVVAN 314 (393)
T ss_dssp HHHHHTTCTTCSEEEEC---CGGG-CCCCCCSCEEEEC
T ss_pred HHHHHcCCCCceEEEEC---ChHh-CCCCCCCCEEEEC
Confidence 4432 11 1234443 5644 4345689999986
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.017 Score=55.05 Aligned_cols=40 Identities=8% Similarity=0.095 Sum_probs=29.4
Q ss_pred eEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhc
Q 037735 44 FRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKS 100 (329)
Q Consensus 44 ~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~ 100 (329)
.+|+|+|||+|..|+.+.. . . .+|+..|.........-++
T Consensus 215 ~~vLDl~cG~G~~~l~la~--------~-------~--~~V~gvd~~~~ai~~a~~n 254 (369)
T 3bt7_A 215 GDLLELYCGNGNFSLALAR--------N-------F--DRVLATEIAKPSVAAAQYN 254 (369)
T ss_dssp SEEEEESCTTSHHHHHHGG--------G-------S--SEEEEECCCHHHHHHHHHH
T ss_pred CEEEEccCCCCHHHHHHHh--------c-------C--CEEEEEECCHHHHHHHHHH
Confidence 5799999999999997753 1 1 3789999987665554433
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.024 Score=55.05 Aligned_cols=130 Identities=12% Similarity=0.057 Sum_probs=76.8
Q ss_pred CCCcchHHHhHHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceE
Q 037735 5 DGAHSYASNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQV 84 (329)
Q Consensus 5 ~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v 84 (329)
.....|+-+...=+.....+...+... ..+..+|+|++||+|..++.+.+.. ..-.+|
T Consensus 23 ~~~~Ffn~~~~~nR~l~~~~~~~~~~~--------~~~g~~VLDlfaGtG~~sl~aa~~~--------------~ga~~V 80 (392)
T 3axs_A 23 DMPVFYNPRMRVNRDLAVLGLEYLCKK--------LGRPVKVADPLSASGIRAIRFLLET--------------SCVEKA 80 (392)
T ss_dssp TCCSSCCGGGHHHHHHHHHHHHHHHHH--------HCSCEEEEESSCTTSHHHHHHHHHC--------------SCEEEE
T ss_pred CCCEEEcCCcHHHHHHHHHHHHHHhhc--------cCCCCEEEECCCcccHHHHHHHHhC--------------CCCCEE
Confidence 356777555554444443333333210 0234789999999999999987521 011379
Q ss_pred EecCCCcchHHhhhhcCC--CC--c-ceeeecccccccc-ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcH
Q 037735 85 FFNDHSDNDFNTLFKSLP--QS--R-SYYAAGVPGSFYS-SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVN 158 (329)
Q Consensus 85 ~~nDLp~ndfn~lf~~l~--~~--~-~~f~~gvpgsFy~-~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~ 158 (329)
+++|+-..-...+-+++. .. + ..++.|....+.. ++ .+.+|+|+..- +.. +
T Consensus 81 ~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~--~~~fD~V~lDP--------~g~------------~- 137 (392)
T 3axs_A 81 YANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW--GFGFDYVDLDP--------FGT------------P- 137 (392)
T ss_dssp EEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC--SSCEEEEEECC--------SSC------------C-
T ss_pred EEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh--CCCCcEEEECC--------CcC------------H-
Confidence 999998766666555432 11 1 2345554333322 22 45789887632 210 1
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 159 EVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 159 ~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
..|+..-.+-|+|||+|+++.
T Consensus 138 --------------~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 138 --------------VPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp --------------HHHHHHHHHHEEEEEEEEEEE
T ss_pred --------------HHHHHHHHHHhCCCCEEEEEe
Confidence 246777788899999888876
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.031 Score=53.99 Aligned_cols=87 Identities=10% Similarity=0.004 Sum_probs=49.8
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHH-----------------------HHHHHhhhcCCCCccceEEecCCCcchHHhhh
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIID-----------------------SVELKFQHECPSAIEFQVFFNDHSDNDFNTLF 98 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~-----------------------~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf 98 (329)
+...|+|.+||||...+.+.....+ .+++.-.......++.+++..|.-..+....-
T Consensus 194 ~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar 273 (384)
T 3ldg_A 194 PDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIAR 273 (384)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHH
Confidence 3468999999999988776642211 11111111111123467999999877766655
Q ss_pred hcCCC---C-cceeeeccccccccccCCCCceeEEEec
Q 037735 99 KSLPQ---S-RSYYAAGVPGSFYSSLFPKSSLHFVHSS 132 (329)
Q Consensus 99 ~~l~~---~-~~~f~~gvpgsFy~~lfp~~s~dl~~Ss 132 (329)
+++.. . ..-|..+ ++.+ +.++.++|+|+|+
T Consensus 274 ~Na~~~gl~~~I~~~~~---D~~~-l~~~~~fD~Iv~N 307 (384)
T 3ldg_A 274 KNAREVGLEDVVKLKQM---RLQD-FKTNKINGVLISN 307 (384)
T ss_dssp HHHHHTTCTTTEEEEEC---CGGG-CCCCCCSCEEEEC
T ss_pred HHHHHcCCCCceEEEEC---ChHH-CCccCCcCEEEEC
Confidence 44321 1 1234443 5644 4344689999975
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.039 Score=53.13 Aligned_cols=87 Identities=11% Similarity=0.108 Sum_probs=50.6
Q ss_pred CceEEEeeeCCCCcccHHHHHHHH-----------------------HHHHHHhhhcCCCCccceEEecCCCcchHHhhh
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNII-----------------------DSVELKFQHECPSAIEFQVFFNDHSDNDFNTLF 98 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii-----------------------~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf 98 (329)
+..+|+|.|||||...+.+..... +.+++.........++.+|+..|+-.......-
T Consensus 195 ~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar 274 (385)
T 3ldu_A 195 AGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIAR 274 (385)
T ss_dssp TTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHH
Confidence 347899999999998887764321 112111111111134468999999877766654
Q ss_pred hcCCC---C-cceeeeccccccccccCCCCceeEEEec
Q 037735 99 KSLPQ---S-RSYYAAGVPGSFYSSLFPKSSLHFVHSS 132 (329)
Q Consensus 99 ~~l~~---~-~~~f~~gvpgsFy~~lfp~~s~dl~~Ss 132 (329)
+++.. . ..-|..+ ++.+ +.++.++|+|+++
T Consensus 275 ~Na~~~gl~~~i~~~~~---D~~~-l~~~~~~D~Iv~N 308 (385)
T 3ldu_A 275 ENAEIAGVDEYIEFNVG---DATQ-FKSEDEFGFIITN 308 (385)
T ss_dssp HHHHHHTCGGGEEEEEC---CGGG-CCCSCBSCEEEEC
T ss_pred HHHHHcCCCCceEEEEC---Chhh-cCcCCCCcEEEEC
Confidence 44321 1 1224443 5644 4445689999975
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=94.32 E-value=0.032 Score=52.14 Aligned_cols=73 Identities=11% Similarity=0.067 Sum_probs=47.9
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--Ccceeeeccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--SRSYYAAGVPGSFYSS 119 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--~~~~f~~gvpgsFy~~ 119 (329)
+..+|+|+|||+|..|..+++ + .|..+|+..|.........-+.+.. .+-.|+.| +|.+-
T Consensus 26 ~g~~vLD~g~G~G~~s~~la~--------~-------~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~---d~~~l 87 (301)
T 1m6y_A 26 DEKIILDCTVGEGGHSRAILE--------H-------CPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKV---SYREA 87 (301)
T ss_dssp TTCEEEETTCTTSHHHHHHHH--------H-------CTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEEC---CGGGH
T ss_pred CCCEEEEEeCCcCHHHHHHHH--------H-------CCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEC---CHHHH
Confidence 346899999999999999886 2 1236899999988777665554432 22334544 56321
Q ss_pred --cCCC---CceeEEEec
Q 037735 120 --LFPK---SSLHFVHSS 132 (329)
Q Consensus 120 --lfp~---~s~dl~~Ss 132 (329)
.++. +++|.++..
T Consensus 88 ~~~l~~~g~~~~D~Vl~D 105 (301)
T 1m6y_A 88 DFLLKTLGIEKVDGILMD 105 (301)
T ss_dssp HHHHHHTTCSCEEEEEEE
T ss_pred HHHHHhcCCCCCCEEEEc
Confidence 1222 578988863
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=92.24 E-value=0.49 Score=49.11 Aligned_cols=125 Identities=11% Similarity=0.017 Sum_probs=69.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHH----------------------------HHHHHHHhhhcCCCCccceEEecCCCcch
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNI----------------------------IDSVELKFQHECPSAIEFQVFFNDHSDND 93 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~i----------------------------i~~~~~~~~~~~~~~pe~~v~~nDLp~nd 93 (329)
...+|+|.+||||...+.+.... .+....+.... ...++.+++..|+-...
T Consensus 190 ~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~-~~~~~~~i~G~Did~~a 268 (703)
T 3v97_A 190 PGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKG-LAEYSSHFYGSDSDARV 268 (703)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHH-HHHCCCCEEEEESCHHH
T ss_pred CCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhc-cccCCccEEEEECCHHH
Confidence 34689999999999887765422 11111110000 00133589999998777
Q ss_pred HHhhhhcCC--C-C-cceeeeccccccccccCC--CCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHH
Q 037735 94 FNTLFKSLP--Q-S-RSYYAAGVPGSFYSSLFP--KSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQ 167 (329)
Q Consensus 94 fn~lf~~l~--~-~-~~~f~~gvpgsFy~~lfp--~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q 167 (329)
....-+++. . . ..-|..+ ++.+...| .+++|+|+++ +|=. . ++ +..+++.+.|+.
T Consensus 269 v~~A~~N~~~agv~~~i~~~~~---D~~~~~~~~~~~~~d~Iv~N--------PPYG---~-Rl---g~~~~l~~ly~~- 329 (703)
T 3v97_A 269 IQRARTNARLAGIGELITFEVK---DVAQLTNPLPKGPYGTVLSN--------PPYG---E-RL---DSEPALIALHSL- 329 (703)
T ss_dssp HHHHHHHHHHTTCGGGEEEEEC---CGGGCCCSCTTCCCCEEEEC--------CCCC---C-------CCHHHHHHHHH-
T ss_pred HHHHHHHHHHcCCCCceEEEEC---ChhhCccccccCCCCEEEeC--------CCcc---c-cc---cchhHHHHHHHH-
Confidence 665544432 1 1 1234443 56443223 3389999986 3311 0 00 223445555543
Q ss_pred HhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 168 FNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 168 ~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
|....+.+.|||.+++.+.
T Consensus 330 --------l~~~lk~~~~g~~~~ilt~ 348 (703)
T 3v97_A 330 --------LGRIMKNQFGGWNLSLFSA 348 (703)
T ss_dssp --------HHHHHHHHCTTCEEEEEES
T ss_pred --------HHHHHHhhCCCCeEEEEeC
Confidence 6677777889999999875
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=91.47 E-value=0.94 Score=42.36 Aligned_cols=110 Identities=15% Similarity=0.129 Sum_probs=58.4
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHH--hhhhcCCCCcceeeecccccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFN--TLFKSLPQSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn--~lf~~l~~~~~~f~~gvpgsFy~~l 120 (329)
..+|+|||||+|..|..... . ..+ -.|+.-|+-.++-. .+++.+.-.--.|..++ ++ ..
T Consensus 95 ~~~VlDLGaapGGwsq~~~~--------~------~gv-~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~--Dv-~~- 155 (321)
T 3lkz_A 95 VGKVIDLGCGRGGWCYYMAT--------Q------KRV-QEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGV--DV-FY- 155 (321)
T ss_dssp CEEEEEETCTTCHHHHHHTT--------C------TTE-EEEEEECCCSTTSCCCCCCCBTTGGGEEEECSC--CT-TS-
T ss_pred CCEEEEeCCCCCcHHHHHHh--------h------cCC-CEEEEEEcCCCCccCcchhhhcCCcceEEEecc--CH-hh-
Confidence 45999999999999986653 1 022 27999999876311 12222221112233333 33 22
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccC-ceEEEEeccc
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPG-GLAALVMFSV 196 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pG-G~l~~~~~g~ 196 (329)
+++..+|+++|-.+ + ++..|++-++ +.+ +-|..-.+-|++| |-+++=.|.+
T Consensus 156 l~~~~~D~ivcDig--------e----------Ss~~~~ve~~------Rtl-~vLel~~~wL~~~~~~f~~KVl~p 207 (321)
T 3lkz_A 156 RPSECCDTLLCDIG--------E----------SSSSAEVEEH------RTI-RVLEMVEDWLHRGPREFCVKVLCP 207 (321)
T ss_dssp SCCCCCSEEEECCC--------C----------CCSCHHHHHH------HHH-HHHHHHHHHHTTCCCEEEEEESCT
T ss_pred CCCCCCCEEEEECc--------c----------CCCChhhhhh------HHH-HHHHHHHHHhccCCCcEEEEEcCC
Confidence 23355888776544 1 1223332211 111 1466666677777 7777766654
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=90.47 E-value=0.73 Score=42.50 Aligned_cols=22 Identities=9% Similarity=0.037 Sum_probs=17.9
Q ss_pred CCceEEEeeeCCCCcccHHHHH
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQ 62 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~ 62 (329)
..+-+|+|+||+.|..++.+..
T Consensus 105 ~~pg~IlEiGv~~G~Sai~ma~ 126 (282)
T 2wk1_A 105 NVPGDLVETGVWRGGACILMRG 126 (282)
T ss_dssp TCCCEEEEECCTTSHHHHHHHH
T ss_pred CCCCcEEEeecCchHHHHHHHH
Confidence 4578999999999998777543
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=89.82 E-value=0.44 Score=40.08 Aligned_cols=35 Identities=9% Similarity=0.072 Sum_probs=26.5
Q ss_pred CceEEEeeeCCCCc-ccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcc
Q 037735 42 NTFRIADFGCSTGP-NTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDN 92 (329)
Q Consensus 42 ~~~~IaDlGCstG~-nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~n 92 (329)
.+.+|+|+|||.|. ++..|.. + ..+.|+..|+...
T Consensus 35 ~~~rVlEVG~G~g~~vA~~La~--------~--------~g~~V~atDInp~ 70 (153)
T 2k4m_A 35 PGTRVVEVGAGRFLYVSDYIRK--------H--------SKVDLVLTDIKPS 70 (153)
T ss_dssp SSSEEEEETCTTCCHHHHHHHH--------H--------SCCEEEEECSSCS
T ss_pred CCCcEEEEccCCChHHHHHHHH--------h--------CCCeEEEEECCcc
Confidence 35799999999995 8888863 1 1368999998543
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=89.53 E-value=0.82 Score=41.87 Aligned_cols=112 Identities=12% Similarity=0.083 Sum_probs=58.9
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeecccc-ccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPG-SFYSS 119 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpg-sFy~~ 119 (329)
.+-.+|+||||+-|.=|..+.+.. ... ...-.++..|++.+.... ++. .--|+.-..| +|++
T Consensus 72 kpg~~VVDLGaAPGGWSQvAa~~~------~vg-----~V~G~vig~D~~~~P~~~----~~~-Gv~~i~~~~G~Df~~- 134 (269)
T 2px2_A 72 QPIGKVVDLGCGRGGWSYYAATMK------NVQ-----EVRGYTKGGPGHEEPMLM----QSY-GWNIVTMKSGVDVFY- 134 (269)
T ss_dssp CCCEEEEEETCTTSHHHHHHTTST------TEE-----EEEEECCCSTTSCCCCCC----CST-TGGGEEEECSCCGGG-
T ss_pred CCCCEEEEcCCCCCHHHHHHhhhc------CCC-----CceeEEEccccccCCCcc----cCC-CceEEEeeccCCccC-
Confidence 346899999999999888876410 000 001356677743211000 000 1111111113 7876
Q ss_pred cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCc-eEEEEecc
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGG-LAALVMFS 195 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG-~l~~~~~g 195 (329)
+++..+|+|+|=.|=. +..+.+.++ +. +. -|....+.|+||| .+++=.|-
T Consensus 135 -~~~~~~DvVLSDMAPn------------------SG~~~vD~~-Rs-----~~-aL~~A~~~Lk~gG~~FvvKVFq 185 (269)
T 2px2_A 135 -KPSEISDTLLCDIGES------------------SPSAEIEEQ-RT-----LR-ILEMVSDWLSRGPKEFCIKILC 185 (269)
T ss_dssp -SCCCCCSEEEECCCCC------------------CSCHHHHHH-HH-----HH-HHHHHHHHHTTCCSEEEEEESC
T ss_pred -CCCCCCCEEEeCCCCC------------------CCccHHHHH-HH-----HH-HHHHHHHHhhcCCcEEEEEECC
Confidence 4455799998755421 111222111 10 00 3555668999999 88888876
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=89.38 E-value=0.47 Score=45.65 Aligned_cols=72 Identities=13% Similarity=0.135 Sum_probs=48.6
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccC
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLF 121 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lf 121 (329)
.-.+++|+||++|.-|..+++ + ...|+..|.-.=+ ......+ +-.+.- ++.+....
T Consensus 211 ~G~~vlDLGAaPGGWT~~l~~--------r---------g~~V~aVD~~~l~--~~l~~~~--~V~~~~---~d~~~~~~ 266 (375)
T 4auk_A 211 NGMWAVDLGACPGGWTYQLVK--------R---------NMWVYSVDNGPMA--QSLMDTG--QVTWLR---EDGFKFRP 266 (375)
T ss_dssp TTCEEEEETCTTCHHHHHHHH--------T---------TCEEEEECSSCCC--HHHHTTT--CEEEEC---SCTTTCCC
T ss_pred CCCEEEEeCcCCCHHHHHHHH--------C---------CCEEEEEEhhhcC--hhhccCC--CeEEEe---CccccccC
Confidence 347899999999999999875 2 2589999964322 1112222 223443 45666666
Q ss_pred CCCceeEEEeccceec
Q 037735 122 PKSSLHFVHSSYTLHW 137 (329)
Q Consensus 122 p~~s~dl~~Ss~alhW 137 (329)
+.+.+|+++|=.+.+|
T Consensus 267 ~~~~~D~vvsDm~~~p 282 (375)
T 4auk_A 267 TRSNISWMVCDMVEKP 282 (375)
T ss_dssp CSSCEEEEEECCSSCH
T ss_pred CCCCcCEEEEcCCCCh
Confidence 7788999999777665
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=88.78 E-value=0.18 Score=49.07 Aligned_cols=70 Identities=13% Similarity=0.191 Sum_probs=44.3
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC----C-Ccceeeeccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP----Q-SRSYYAAGVPGSFY 117 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~----~-~~~~f~~gvpgsFy 117 (329)
..+|+|+|||+|..++.+.. . ..+|+..|.........-.++. . .+--|+.| ++.
T Consensus 94 g~~VLDLgcG~G~~al~LA~--------~---------g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~---Da~ 153 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMS--------K---------ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTG---DFK 153 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHT--------T---------CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEES---CGG
T ss_pred CCEEEEeCCCchHHHHHHHh--------c---------CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEEC---cHH
Confidence 36899999999999887753 1 1479999998776665544332 1 12235554 443
Q ss_pred ccc--CCCCceeEEEec
Q 037735 118 SSL--FPKSSLHFVHSS 132 (329)
Q Consensus 118 ~~l--fp~~s~dl~~Ss 132 (329)
+-+ ++++++|+|++.
T Consensus 154 ~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 154 EYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp GSHHHHHHHCCSEEEEC
T ss_pred HhhhhccCCCceEEEEC
Confidence 322 234689999853
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=86.58 E-value=0.93 Score=41.21 Aligned_cols=73 Identities=12% Similarity=0.118 Sum_probs=41.8
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHH--hhhhcCCCCcceeeeccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFN--TLFKSLPQSRSYYAAGVPGSFYSS 119 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn--~lf~~l~~~~~~f~~gvpgsFy~~ 119 (329)
...+|+|||||+|..|..... . ..+ -.|+.-|+-..+-. .+++++.-..-.|..|| ++ .+
T Consensus 78 ~g~~VvDLGaapGGWSq~~a~--------~------~g~-~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gv--Dv-~~ 139 (267)
T 3p8z_A 78 PEGRVIDLGCGRGGWSYYCAG--------L------KKV-TEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGK--DV-FY 139 (267)
T ss_dssp CCEEEEEESCTTSHHHHHHHT--------S------TTE-EEEEEECCCSTTSCCCCCCCCTTTTSEEEECSC--CG-GG
T ss_pred CCCEEEEcCCCCCcHHHHHHH--------h------cCC-CEEEEEecCCCCccCcchhhhcCcCceEEEecc--ce-ee
Confidence 345999999999999987653 1 022 37999999654311 12222221123456654 54 22
Q ss_pred cCCCCceeEEEecc
Q 037735 120 LFPKSSLHFVHSSY 133 (329)
Q Consensus 120 lfp~~s~dl~~Ss~ 133 (329)
+.| ..+|.++|-.
T Consensus 140 ~~~-~~~DtllcDI 152 (267)
T 3p8z_A 140 LPP-EKCDTLLCDI 152 (267)
T ss_dssp CCC-CCCSEEEECC
T ss_pred cCC-ccccEEEEec
Confidence 323 5577777643
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=85.94 E-value=1.1 Score=41.94 Aligned_cols=104 Identities=16% Similarity=0.229 Sum_probs=60.3
Q ss_pred CCCceEEEeeeC------CCCcccHHHHHHHHHHHHHHhhhcCCCCcc-ceEEecCCCcchHHhhhhcCCCCcceeeecc
Q 037735 40 VPNTFRIADFGC------STGPNTFIAVQNIIDSVELKFQHECPSAIE-FQVFFNDHSDNDFNTLFKSLPQSRSYYAAGV 112 (329)
Q Consensus 40 ~~~~~~IaDlGC------stG~nT~~l~~~ii~~~~~~~~~~~~~~pe-~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gv 112 (329)
.+...+|+|+|+ +.|. .+++ ++ .|+ ..|+.+|| ||+... ..+++.|
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS---~VLr--------~~------~p~g~~VVavDL--~~~~sd-------a~~~IqG- 159 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGT---AVLR--------QW------LPTGTLLVDSDL--NDFVSD-------ADSTLIG- 159 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH---HHHH--------HH------SCTTCEEEEEES--SCCBCS-------SSEEEES-
T ss_pred ecCCCEEEeCCCCCCCCCCCcH---HHHH--------Hh------CCCCcEEEEeeC--cccccC-------CCeEEEc-
Confidence 466799999995 6666 2222 22 343 47999999 565531 2356665
Q ss_pred ccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecC-CcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEE
Q 037735 113 PGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRR-FVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAAL 191 (329)
Q Consensus 113 pgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~-~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~ 191 (329)
++ ..+.....+|+|+|=.| |.. .|++-... +..... +.-|.-..+.|+|||.+++
T Consensus 160 --D~-~~~~~~~k~DLVISDMA-------PNt---TG~~D~d~~Rs~~L~-----------ElALdfA~~~LkpGGsFvV 215 (344)
T 3r24_A 160 --DC-ATVHTANKWDLIISDMY-------DPR---TKHVTKENDSKEGFF-----------TYLCGFIKQKLALGGSIAV 215 (344)
T ss_dssp --CG-GGEEESSCEEEEEECCC-------CTT---SCSSCSCCCCCCTHH-----------HHHHHHHHHHEEEEEEEEE
T ss_pred --cc-cccccCCCCCEEEecCC-------CCc---CCccccchhHHHHHH-----------HHHHHHHHHhCcCCCEEEE
Confidence 45 44555688999998665 221 11100000 111111 1335555667999999999
Q ss_pred Eec
Q 037735 192 VMF 194 (329)
Q Consensus 192 ~~~ 194 (329)
=+|
T Consensus 216 KVF 218 (344)
T 3r24_A 216 KIT 218 (344)
T ss_dssp EEC
T ss_pred EEe
Confidence 876
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=85.19 E-value=3.4 Score=38.27 Aligned_cols=112 Identities=11% Similarity=-0.034 Sum_probs=68.2
Q ss_pred CCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC--------CCCcceeeec
Q 037735 40 VPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL--------PQSRSYYAAG 111 (329)
Q Consensus 40 ~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l--------~~~~~~f~~g 111 (329)
.+++.+||=+|-|.|.....+++ + .+..+|...|+-..-....-+-+ .+.+--.+.+
T Consensus 81 ~p~pk~VLIiGgGdG~~~revlk---------~------~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~ 145 (294)
T 3o4f_A 81 HGHAKHVLIIGGGDGAMLREVTR---------H------KNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVID 145 (294)
T ss_dssp SSCCCEEEEESCTTSHHHHHHHT---------C------TTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEES
T ss_pred CCCCCeEEEECCCchHHHHHHHH---------c------CCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEec
Confidence 36789999999999998887763 1 22236777777543222111112 1223334566
Q ss_pred cccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEE
Q 037735 112 VPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAAL 191 (329)
Q Consensus 112 vpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~ 191 (329)
++..|-.+ .++++|+|+.=.+=.+- .+..=+. ..|++...+.|+|||+|+.
T Consensus 146 Dg~~~l~~--~~~~yDvIi~D~~dp~~--~~~~L~t-------------------------~eFy~~~~~~L~p~Gv~v~ 196 (294)
T 3o4f_A 146 DGVNFVNQ--TSQTFDVIISDCTDPIG--PGESLFT-------------------------SAFYEGCKRCLNPGGIFVA 196 (294)
T ss_dssp CTTTTTSC--SSCCEEEEEESCCCCCC--TTCCSSC-------------------------CHHHHHHHHTEEEEEEEEE
T ss_pred hHHHHHhh--ccccCCEEEEeCCCcCC--CchhhcC-------------------------HHHHHHHHHHhCCCCEEEE
Confidence 66666543 56789999975542210 0100011 1789999999999999998
Q ss_pred Eecc
Q 037735 192 VMFS 195 (329)
Q Consensus 192 ~~~g 195 (329)
..-.
T Consensus 197 q~~s 200 (294)
T 3o4f_A 197 QNGV 200 (294)
T ss_dssp EEEE
T ss_pred ecCC
Confidence 7643
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=84.59 E-value=0.43 Score=43.33 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=20.6
Q ss_pred CCceEEEeeeCCCCcccHHHHHHH
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNI 64 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~i 64 (329)
.+..+|||+|||+|.|++.++...
T Consensus 59 ~~~~~ILEiGfGtG~n~l~~~~~~ 82 (257)
T 2qy6_A 59 HPLFVVAESGFGTGLNFLTLWQAF 82 (257)
T ss_dssp SSEEEEEESCCTTSHHHHHHHHHH
T ss_pred CCCCEEEEECCChHHHHHHHHHHH
Confidence 457999999999999999987643
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=84.42 E-value=1.2 Score=40.79 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=22.1
Q ss_pred HhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 168 FNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 168 ~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
+-.++..+++...+.|+|||.+++..-
T Consensus 72 ~l~~l~~~~~~~~rvLk~~G~l~i~~~ 98 (297)
T 2zig_A 72 FLDELDRVWREVFRLLVPGGRLVIVVG 98 (297)
T ss_dssp HHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHcCCCcEEEEEEC
Confidence 445567788899999999999998874
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=81.53 E-value=1.1 Score=44.86 Aligned_cols=49 Identities=14% Similarity=0.106 Sum_probs=28.2
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcC--CCCccceEEecCCCcchH
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHEC--PSAIEFQVFFNDHSDNDF 94 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~--~~~pe~~v~~nDLp~ndf 94 (329)
...+|+|-.||||.+-....+.+.+ ...... ....+..++..|+-...+
T Consensus 217 ~~~~I~DPacGsGgfL~~a~~~l~~----~~~~~~~~~~~~~~~i~G~E~~~~~~ 267 (530)
T 3ufb_A 217 LGESVLDPACGTGGFLVEAFEHLER----QCKTVEDREVLQESSIFGGEAKSLPY 267 (530)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHT----TCCSHHHHHHHHTCCEEEECCSHHHH
T ss_pred CCCEEEeCCCCcchHHHHHHHHHHH----hccchhHHHHHhhhhhhhhhccHHHH
Confidence 3458999999999987776654421 110000 001135688888854443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 329 | ||||
| d1m6ex_ | 359 | c.66.1.35 (X:) Salicylic acid carboxyl methyltrans | 2e-92 |
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} Length = 359 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Score = 277 bits (709), Expect = 2e-92
Identities = 112/334 (33%), Positives = 166/334 (49%), Gaps = 26/334 (7%)
Query: 1 MVGGDGAHSYASNSAYQSIQVYILRYDPRTAVTDLG-TNAVPNTFRIADFGCSTGPNTFI 59
M GG G +SYA NS Q + I + A+T L + V IAD GCS+GPN
Sbjct: 9 MKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGCSSGPNALF 68
Query: 60 AVQNIIDSVELKFQ-HECPSAIEFQVFFNDHSDNDFNTLFKSLPQSR----SYYAAGVPG 114
AV +I +VE + ++ E+Q+F ND NDFN +F+SLP + GVPG
Sbjct: 69 AVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPG 128
Query: 115 SFYSSLFPKSSLHFVHSSYTLHWLSKVPK-VDGVEGSIQ-TRRFVNEVMEAYAAQFNNDF 172
SFY LFP+++LHF+HSSY+L WLS+VP ++ +G+I V+ AY QF D
Sbjct: 129 SFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDH 188
Query: 173 QTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEK- 231
FL RAQE+VPGG L + + + L ++ G++ +EK
Sbjct: 189 ALFLRCRAQEVVPGGRMVLTILGRRSEDR-ASTECCLIWQLLAMALNQMVSEGLIEEEKM 247
Query: 232 ------MYNPTPKELEGIIQRNGNFTIERMEKMT----------NPKQQVLCSASDLAVA 275
Y P+P E+E I + G+F I+ +E + V ++A
Sbjct: 248 DKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCTKDGDGGGSVEEEGYNVARC 307
Query: 276 MRAVYEGLVKEHFGDEFVDKIFNHFATKAEENIS 309
MRAV E L+ +HFG+ ++ +F+ + E +S
Sbjct: 308 MRAVAEPLLLDHFGEAIIEDVFHRYKLLIIERMS 341
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 329 | |||
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 100.0 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.57 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.55 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.5 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.45 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.44 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.44 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.41 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.4 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.4 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.39 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.38 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.38 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.32 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.28 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.27 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.26 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.26 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.26 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.21 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.15 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.13 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.09 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.09 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.05 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.02 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 98.99 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 98.99 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 98.8 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.79 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 98.77 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 98.74 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 98.64 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 98.61 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 98.6 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.57 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.49 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 98.48 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 98.45 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 98.45 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 98.42 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.4 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 98.39 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 98.37 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.37 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 98.36 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 98.31 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 98.25 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 98.03 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 97.92 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 97.92 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 97.85 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 97.84 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 97.82 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 97.8 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 97.48 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 97.4 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 97.16 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 97.13 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 97.12 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 97.06 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 97.04 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.01 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 96.9 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 96.31 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 96.27 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 96.26 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 96.2 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 96.19 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 96.07 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 96.06 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 95.51 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 95.43 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 95.22 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 94.54 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 94.42 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 94.3 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 94.13 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 93.56 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 93.24 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 92.59 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 92.47 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 92.43 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 90.83 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 90.42 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 88.43 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 87.16 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 86.52 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 86.11 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 84.9 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 83.71 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 83.08 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 81.94 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 81.69 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 81.27 |
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=100.00 E-value=1.5e-92 Score=682.18 Aligned_cols=324 Identities=35% Similarity=0.592 Sum_probs=297.1
Q ss_pred CCCCCCCcchHHHhHHHHHHHHHhHhhHHHHHhhcccC-CCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCC-C
Q 037735 1 MVGGDGAHSYASNSAYQSIQVYILRYDPRTAVTDLGTN-AVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECP-S 78 (329)
Q Consensus 1 m~gG~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~i~~~-~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~-~ 78 (329)
|+||||++||++||..|++++..++|+|++||.++... ..+++++|||||||+|+||+.+++.||++|+++|.+.+. +
T Consensus 9 M~gG~G~~SYa~NS~~Q~~~i~~~kp~leeai~~~~~~~~~~~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~ 88 (359)
T d1m6ex_ 9 MKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGREN 88 (359)
T ss_dssp CCCCTTSTTTTSSCHHHHHHHHHTHHHHHHHHHHHHSSSSSSSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSS
T ss_pred cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999987543 256789999999999999999999999999999987653 4
Q ss_pred CccceEEecCCCcchHHhhhhcCCCC----cceeeeccccccccccCCCCceeEEEeccceecccCCCCC-CCCccceee
Q 037735 79 AIEFQVFFNDHSDNDFNTLFKSLPQS----RSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKV-DGVEGSIQT 153 (329)
Q Consensus 79 ~pe~~v~~nDLp~ndfn~lf~~l~~~----~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~-~~n~g~i~~ 153 (329)
.||+||||||||.||||+||++||.. ++||++|||||||+||||++|+||+||++||||||++|+. .+|+|+||+
T Consensus 89 ~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~ 168 (359)
T d1m6ex_ 89 SPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYM 168 (359)
T ss_dssp CCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSS
T ss_pred CCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEE
Confidence 78999999999999999999999863 4699999999999999999999999999999999999999 789999999
Q ss_pred c-CCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCc-
Q 037735 154 R-RFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEK- 231 (329)
Q Consensus 154 ~-~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~- 231 (329)
. +++++|.+||++||++||.+||++||+||+|||+|+++++|+++..+.+ ++.+.+|++|.++|++||.||+|++|+
T Consensus 169 ~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~-~~~~~~~~~l~~al~dmv~eGlI~eek~ 247 (359)
T d1m6ex_ 169 ANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRAS-TECCLIWQLLAMALNQMVSEGLIEEEKM 247 (359)
T ss_dssp CSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEECSSSSSSS-TTTSTTTHHHHHHHHHHHHTTCSCCSTT
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEeccCCCCCCC-CccchHHHHHHHHHHHHHHcCCCCHHHH
Confidence 7 4788899999999999999999999999999999999999999877653 467789999999999999999999999
Q ss_pred ------ccCCCHHHHHHHHHhCCceEEeEEEEeecCcccc----------cccHHHHhhhHhhhhhhHHhhhcChHHHHH
Q 037735 232 ------MYNPTPKELEGIIQRNGNFTIERMEKMTNPKQQV----------LCSASDLAVAMRAVYEGLVKEHFGDEFVDK 295 (329)
Q Consensus 232 ------~y~ps~eE~~~~i~~~g~f~i~~~e~~~~~~~~~----------~~~~~~~~~~iRa~~e~~~~~~~g~~~~d~ 295 (329)
+|+||++|++++|+++|+|+|+++|.++.+|... ...++.+++++||++||++++|||++|+|+
T Consensus 248 dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~e~~~~~~~~~~~~~~~~~d~~~~~~~~a~~~RA~~e~~l~~hfg~~i~D~ 327 (359)
T d1m6ex_ 248 DKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCTKDGDGGGSVEEEGYNVARCMRAVAEPLLLDHFGEAIIED 327 (359)
T ss_dssp GGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEEEEETTCCSSCTTCCSSTTTTTTHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HhccCccccCCHHHHHHHhccCCCeeeeeeEeeecccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcChHHHHH
Confidence 9999999999999999999999999876543311 124688999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhcCCCceEEEEEEEeC
Q 037735 296 IFNHFATKAEENISIIGQRVQDSMMDLFILLKRI 329 (329)
Q Consensus 296 ~f~ry~~~~~~~~~~~~~~~~~~~~~~~~~L~r~ 329 (329)
||+||+++++++++.. ..++++++++|+||
T Consensus 328 lF~r~~~~v~~~~~~~----~~~~~~~~~sL~rK 357 (359)
T d1m6ex_ 328 VFHRYKLLIIERMSKE----KTKFINVIVSLIRK 357 (359)
T ss_dssp HHHHHHHHHHHHHHSS----CCEEEEEEEEEEBC
T ss_pred HHHHHHHHHHhhHhhc----CCceEEEEEEEEec
Confidence 9999999999999853 56799999999997
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.57 E-value=1e-14 Score=128.20 Aligned_cols=154 Identities=14% Similarity=0.169 Sum_probs=107.9
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CCCcceeeeccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQSRSYYAAGVPGSFY 117 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~~~~~f~~gvpgsFy 117 (329)
.+..+|||+|||+|..|..+.. + . .+|+..|+..++....-+.+ ...+--|..+ ++.
T Consensus 14 ~~~~rVLDiGcG~G~~~~~l~~--------~-------~--~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~---d~~ 73 (231)
T d1vl5a_ 14 KGNEEVLDVATGGGHVANAFAP--------F-------V--KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQG---DAE 73 (231)
T ss_dssp CSCCEEEEETCTTCHHHHHHGG--------G-------S--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEEC---CC-
T ss_pred CCcCEEEEecccCcHHHHHHHH--------h-------C--CEEEEEECCHHHHhhhhhccccccccccccccc---ccc
Confidence 3458999999999999987753 2 1 37899999887765542222 2112235554 675
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
+-.||++++|+|+|..++||+.+ ...+|+..++.|+|||+|++..+..+
T Consensus 74 ~l~~~~~~fD~v~~~~~l~~~~d-------------------------------~~~~l~~~~r~LkpgG~l~i~~~~~~ 122 (231)
T d1vl5a_ 74 QMPFTDERFHIVTCRIAAHHFPN-------------------------------PASFVSEAYRVLKKGGQLLLVDNSAP 122 (231)
T ss_dssp CCCSCTTCEEEEEEESCGGGCSC-------------------------------HHHHHHHHHHHEEEEEEEEEEEEEBC
T ss_pred cccccccccccccccccccccCC-------------------------------HHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 55589999999999999999754 35889999999999999999887655
Q ss_pred CCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEeec
Q 037735 198 DGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMTN 260 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~~ 260 (329)
+.. .++.+.+.+......+. ....+.+++...+++.| |++++++.++.
T Consensus 123 ~~~---------~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~aG-f~~~~~~~~~~ 170 (231)
T d1vl5a_ 123 END---------AFDVFYNYVEKERDYSH-----HRAWKKSDWLKMLEEAG-FELEELHCFHK 170 (231)
T ss_dssp SSH---------HHHHHHHHHHHHHCTTC-----CCCCBHHHHHHHHHHHT-CEEEEEEEEEE
T ss_pred CCH---------HHHHHHHHHHhhcccCc-----ccCCCHHHHHHHHHHCC-CEEEEEEEeec
Confidence 321 23344443333322221 45568899999999985 99988876643
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.55 E-value=1.6e-14 Score=128.02 Aligned_cols=153 Identities=16% Similarity=0.211 Sum_probs=107.3
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CCCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~~~~~f~~gvpgsFy~ 118 (329)
.-.||||+|||+|..|..+.+ + . .+|+..|+..++.+..-+.+ ......|+.| +..+
T Consensus 16 ~~~rILDiGcGtG~~~~~la~--------~-------~--~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~---d~~~ 75 (234)
T d1xxla_ 16 AEHRVLDIGAGAGHTALAFSP--------Y-------V--QECIGVDATKEMVEVASSFAQEKGVENVRFQQG---TAES 75 (234)
T ss_dssp TTCEEEEESCTTSHHHHHHGG--------G-------S--SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEEC---BTTB
T ss_pred CCCEEEEeCCcCcHHHHHHHH--------h-------C--CeEEEEeCChhhhhhhhhhhccccccccccccc---cccc
Confidence 357999999999999988864 2 1 37899999988776643332 1112345554 5655
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCC
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
-.||++++|+|+|+.++||+.+ ...+|+...+.|+|||+++++.+..++
T Consensus 76 ~~~~~~~fD~v~~~~~l~~~~d-------------------------------~~~~l~~~~r~LkpgG~~~~~~~~~~~ 124 (234)
T d1xxla_ 76 LPFPDDSFDIITCRYAAHHFSD-------------------------------VRKAVREVARVLKQDGRFLLVDHYAPE 124 (234)
T ss_dssp CCSCTTCEEEEEEESCGGGCSC-------------------------------HHHHHHHHHHHEEEEEEEEEEEECBCS
T ss_pred ccccccccceeeeeceeecccC-------------------------------HHHHHHHHHHeeCCCcEEEEEEcCCCC
Confidence 5589999999999999999654 348899999999999999998877654
Q ss_pred CCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEeec
Q 037735 199 GIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMTN 260 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~~ 260 (329)
.. .++.+.+.+........ ....+.+++...++.. +|++.+++.+..
T Consensus 125 ~~---------~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-gf~~~~~~~~~~ 171 (234)
T d1xxla_ 125 DP---------VLDEFVNHLNRLRDPSH-----VRESSLSEWQAMFSAN-QLAYQDIQKWNL 171 (234)
T ss_dssp SH---------HHHHHHHHHHHHHCTTC-----CCCCBHHHHHHHHHHT-TEEEEEEEEEEE
T ss_pred CH---------HHHHHHHHHHhhCCCcc-----cccCCHHHHHHHHHHC-CCceeEEEEeeC
Confidence 21 22222233332222211 3334789999999988 599988887643
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.50 E-value=5.7e-13 Score=121.30 Aligned_cols=150 Identities=17% Similarity=0.086 Sum_probs=102.9
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---C-Ccceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---Q-SRSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~-~~~~f~~gvpgsF 116 (329)
++..+|||+|||+|..+..+.+ ++ ..+|+.-|+..++....-+... - .+--|..+ ++
T Consensus 66 ~~~~~vLDiGcG~G~~~~~la~--------~~--------~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~---d~ 126 (282)
T d2o57a1 66 QRQAKGLDLGAGYGGAARFLVR--------KF--------GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYG---SF 126 (282)
T ss_dssp CTTCEEEEETCTTSHHHHHHHH--------HH--------CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEEC---CT
T ss_pred CCCCEEEEeCCCCcHHHhhhhc--------cC--------CcEEEEEeccchhhhhhhccccccccccccccccc---cc
Confidence 3468999999999998888764 22 2579999998766444332221 1 12235554 67
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
.+-.+|++++|+|+|..++||+. |...+|+..++.|+|||+|++..+..
T Consensus 127 ~~l~~~~~sfD~V~~~~~l~h~~-------------------------------d~~~~l~~~~~~LkpgG~l~~~~~~~ 175 (282)
T d2o57a1 127 LEIPCEDNSYDFIWSQDAFLHSP-------------------------------DKLKVFQECARVLKPRGVMAITDPMK 175 (282)
T ss_dssp TSCSSCTTCEEEEEEESCGGGCS-------------------------------CHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred ccccccccccchhhccchhhhcc-------------------------------CHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 66668999999999999999964 33488999999999999999987765
Q ss_pred CCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 197 PDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
....... .+ ...+.... . ..+++.+++.+.+++.| |+....+..
T Consensus 176 ~~~~~~~-----~~----~~~~~~~~--~------~~~~s~~~~~~~l~~~G-f~~i~~~d~ 219 (282)
T d2o57a1 176 EDGIDKS-----SI----QPILDRIK--L------HDMGSLGLYRSLAKECG-LVTLRTFSR 219 (282)
T ss_dssp CTTCCGG-----GG----HHHHHHHT--C------SSCCCHHHHHHHHHHTT-EEEEEEEEC
T ss_pred CCCCchh-----HH----HHHHHHhc--c------CCCCCHHHHHHHHHHcC-CceEEEEEC
Confidence 5432211 11 11112221 1 45679999999999984 987766554
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.45 E-value=1.2e-12 Score=120.23 Aligned_cols=217 Identities=11% Similarity=0.101 Sum_probs=130.5
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CCC-cceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQS-RSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~~-~~~f~~gvpgsF 116 (329)
.+..+|||+|||.|..+..+.+ ++ ..+|+..|+..+.....-+.. ... ...+... ++
T Consensus 51 ~~g~~VLDiGCG~G~~a~~~a~--------~~--------g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~---d~ 111 (280)
T d2fk8a1 51 KPGMTLLDIGCGWGTTMRRAVE--------RF--------DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQ---GW 111 (280)
T ss_dssp CTTCEEEEESCTTSHHHHHHHH--------HH--------CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEES---CG
T ss_pred CCCCEEEEecCCchHHHHHHHH--------hC--------ceeEEEecchHHHHHHHHHHHHhhccccchhhhhh---hh
Confidence 3458999999999998887764 21 258999999988765543322 211 1223332 22
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
..+++++|.|+|..+++.+.+ +++..||+..++-|+|||++++...+.
T Consensus 112 ---~~~~~~fD~i~si~~~eh~~~-----------------------------~~~~~~f~~i~~~LkpgG~~~i~~i~~ 159 (280)
T d2fk8a1 112 ---EDFAEPVDRIVSIEAFEHFGH-----------------------------ENYDDFFKRCFNIMPADGRMTVQSSVS 159 (280)
T ss_dssp ---GGCCCCCSEEEEESCGGGTCG-----------------------------GGHHHHHHHHHHHSCTTCEEEEEEEEC
T ss_pred ---hhhccchhhhhHhhHHHHhhh-----------------------------hhHHHHHHHHHhccCCCceEEEEEeec
Confidence 134678999999999988542 367799999999999999999988765
Q ss_pred CCCCcccCCcccchHH--HHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEeecCcccccccHHHHhh
Q 037735 197 PDGIPLVNNAAGSFYN--TFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMTNPKQQVLCSASDLAV 274 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~--~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~~~~~~~~~~~~~~~~ 274 (329)
.+............++ ....-++.-+--| -++||.+|+...+++. +|++..++.+ +..+++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~dfI~kyifPg------g~lPS~~~l~~~~e~a-Gf~v~~~~~~----------~~hYa~ 222 (280)
T d2fk8a1 160 YHPYEMAARGKKLSFETARFIKFIVTEIFPG------GRLPSTEMMVEHGEKA-GFTVPEPLSL----------RPHYIK 222 (280)
T ss_dssp CCHHHHHTTCHHHHHHHHHHHHHHHHHTSTT------CCCCCHHHHHHHHHHT-TCBCCCCEEC----------HHHHHH
T ss_pred cCcchhhhcccccccccccccchhhhhccCC------CcccchHhhhhhHHhh-ccccceeeec----------ccCHHH
Confidence 5421110000000000 0011112222223 5689999999999988 5999877665 455677
Q ss_pred hHhhhhhhHHhhh--cChHHHHHHHHHHHHHHHHhhhhhhhhcCCCceEEEEEEEe
Q 037735 275 AMRAVYEGLVKEH--FGDEFVDKIFNHFATKAEENISIIGQRVQDSMMDLFILLKR 328 (329)
Q Consensus 275 ~iRa~~e~~~~~~--~g~~~~d~~f~ry~~~~~~~~~~~~~~~~~~~~~~~~~L~r 328 (329)
++++|.+.+.++. +-+.--+++|.|+..-++..-.-+ +....-...+++.|
T Consensus 223 TL~~W~~~f~~~~~~i~~~~~~~~~r~w~~yl~~c~~~F---~~~~~~~~q~~~~k 275 (280)
T d2fk8a1 223 TLRIWGDTLQSNKDKAIEVTSEEVYNRYMKYLRGCEHYF---TDEMLDCSLVTYLK 275 (280)
T ss_dssp HHHHHHHHHHHTHHHHHHHSCHHHHHHHHHHHHHHHHHH---HTTSCEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH---hCCCccEEEEEEEc
Confidence 7777766544321 111112456666665555444444 23333444566655
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.44 E-value=9.5e-13 Score=113.90 Aligned_cols=139 Identities=14% Similarity=0.084 Sum_probs=94.8
Q ss_pred eEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccCCC
Q 037735 44 FRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLFPK 123 (329)
Q Consensus 44 ~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lfp~ 123 (329)
.+|||+|||+|.++..+. +++..|+..++.+..-+. ...|..+ ++.+..+|+
T Consensus 38 ~~vLDiGcG~G~~~~~~~---------------------~~~giD~s~~~~~~a~~~----~~~~~~~---d~~~l~~~~ 89 (208)
T d1vlma_ 38 GRGVEIGVGTGRFAVPLK---------------------IKIGVEPSERMAEIARKR----GVFVLKG---TAENLPLKD 89 (208)
T ss_dssp SCEEEETCTTSTTHHHHT---------------------CCEEEESCHHHHHHHHHT----TCEEEEC---BTTBCCSCT
T ss_pred CeEEEECCCCcccccccc---------------------eEEEEeCChhhccccccc----ccccccc---ccccccccc
Confidence 479999999998876541 346778887776653321 1234443 564555899
Q ss_pred CceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCCccc
Q 037735 124 SSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLV 203 (329)
Q Consensus 124 ~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~ 203 (329)
+++|+|+|+.+|||+.+ +..+|+..++.|+|||.|++..+..++.
T Consensus 90 ~~fD~I~~~~~l~h~~d-------------------------------~~~~l~~~~~~L~pgG~l~i~~~~~~~~---- 134 (208)
T d1vlma_ 90 ESFDFALMVTTICFVDD-------------------------------PERALKEAYRILKKGGYLIVGIVDRESF---- 134 (208)
T ss_dssp TCEEEEEEESCGGGSSC-------------------------------HHHHHHHHHHHEEEEEEEEEEEECSSSH----
T ss_pred ccccccccccccccccc-------------------------------cccchhhhhhcCCCCceEEEEecCCcch----
Confidence 99999999999999753 3478999999999999999999765531
Q ss_pred CCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 204 NNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 204 ~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
+ ...+. .-..+..-....+++|.+|+.+++++.| |+++++..
T Consensus 135 -------~---~~~~~-~~~~~~~~~~~~~~~s~~~l~~~l~~~G-f~~i~v~~ 176 (208)
T d1vlma_ 135 -------L---GREYE-KNKEKSVFYKNARFFSTEELMDLMRKAG-FEEFKVVQ 176 (208)
T ss_dssp -------H---HHHHH-HTTTC-CCSTTCCCCCHHHHHHHHHHTT-CEEEEEEE
T ss_pred -------h---HHhhh-hccccccccccccCCCHHHHHHHHHHcC-CeEEEEEE
Confidence 1 00001 0011111111156789999999999994 98877664
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.44 E-value=7.7e-13 Score=116.41 Aligned_cols=157 Identities=17% Similarity=0.177 Sum_probs=106.2
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CCCcce-eeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQSRSY-YAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~~~~~-f~~gvpgsF 116 (329)
++..+|||+|||||..|..+.+.. ..|..+|+..|+...+....-+.+ +....+ +..+ ++
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~-------------~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~---d~ 101 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNI-------------NQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCN---DI 101 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTC-------------CCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECS---CT
T ss_pred CCCCEEEEeccchhhHHHHHHHhh-------------cCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccc---hh
Confidence 345789999999999999887511 146689999999998887765433 221122 2332 33
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
. -+|.+..|+++|++++||++. .|..++|+...+.|+|||.|++.-+..
T Consensus 102 ~--~~~~~~~d~i~~~~~l~~~~~-----------------------------~d~~~~l~~i~~~LkpgG~li~~~~~~ 150 (225)
T d1im8a_ 102 R--HVEIKNASMVILNFTLQFLPP-----------------------------EDRIALLTKIYEGLNPNGVLVLSEKFR 150 (225)
T ss_dssp T--TCCCCSEEEEEEESCGGGSCG-----------------------------GGHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred h--ccccccceeeEEeeeccccCh-----------------------------hhHHHHHHHHHHhCCCCceeecccccc
Confidence 2 246678899999999999752 267799999999999999999987665
Q ss_pred CCCCcccCCcccchHHHHHHHHHHHH-hcCCcCCCc-----------ccCCCHHHHHHHHHhCCceEEeE
Q 037735 197 PDGIPLVNNAAGSFYNTFGSCLVELT-KMGILSKEK-----------MYNPTPKELEGIIQRNGNFTIER 254 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~l~~a~~~l~-~eG~i~~~~-----------~y~ps~eE~~~~i~~~g~f~i~~ 254 (329)
.+.... -+.+...+..+. ..|. ++.+ ++..+.+|+.+.+++.| |+-..
T Consensus 151 ~~~~~~--------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~L~~aG-F~~v~ 210 (225)
T d1im8a_ 151 FEDTKI--------NHLLIDLHHQFKRANGY-SELEVSQKRTALENVMRTDSIETHKVRLKNVG-FSQVE 210 (225)
T ss_dssp CSSHHH--------HHHHHHHHHHHHHHTTG-GGSTTHHHHHHHHHHCCCCCHHHHHHHHHHHT-CSEEE
T ss_pred cccchh--------hhHHHHHHHHHHHHcCC-CHHHHHHHHHHhhcccCCCCHHHHHHHHHHcC-CCceE
Confidence 543211 112233333332 2232 2222 46679999999999995 87544
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=4.8e-13 Score=119.06 Aligned_cols=153 Identities=15% Similarity=0.098 Sum_probs=106.9
Q ss_pred CCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCc--------------
Q 037735 40 VPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSR-------------- 105 (329)
Q Consensus 40 ~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~-------------- 105 (329)
..+..+|||+|||+|..+..+.+ . .. -+|+..|+..++...+-+.+....
T Consensus 49 ~~~g~~vLDlGcG~G~~~~~~~~--------~-------~~-~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~ 112 (257)
T d2a14a1 49 GLQGDTLIDIGSGPTIYQVLAAC--------D-------SF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACE 112 (257)
T ss_dssp SCCEEEEEESSCTTCCGGGTTGG--------G-------TE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCHhHHHHhc--------c-------cc-CcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHH
Confidence 34568999999999999876642 1 11 369999999887666543322100
Q ss_pred --------------------ceeeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHH
Q 037735 106 --------------------SYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYA 165 (329)
Q Consensus 106 --------------------~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~ 165 (329)
......+..+.....++.+++|+++|..++||+...+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~----------------------- 169 (257)
T d2a14a1 113 LEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSL----------------------- 169 (257)
T ss_dssp HTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSH-----------------------
T ss_pred hccccchHHHHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccH-----------------------
Confidence 0011122233334568899999999999999986432
Q ss_pred HHHhhcHHHHHHHHHHHhccCceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCc--ccCCCHHHHHHH
Q 037735 166 AQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEK--MYNPTPKELEGI 243 (329)
Q Consensus 166 ~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~--~y~ps~eE~~~~ 243 (329)
.|+..+++..++.|+|||.|+++.....+.... .... .++.+.++++++
T Consensus 170 ----~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~ 220 (257)
T d2a14a1 170 ----DAYRAALCNLASLLKPGGHLVTTVTLRLPSYMV-------------------------GKREFSCVALEKGEVEQA 220 (257)
T ss_dssp ----HHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEE-------------------------TTEEEECCCCCHHHHHHH
T ss_pred ----HHHHHHHHHHHhccCCCcEEEEEEeccccccee-------------------------ccccccccCCCHHHHHHH
Confidence 477899999999999999999998765442110 0001 566799999999
Q ss_pred HHhCCceEEeEEEEeecC
Q 037735 244 IQRNGNFTIERMEKMTNP 261 (329)
Q Consensus 244 i~~~g~f~i~~~e~~~~~ 261 (329)
++.+| |+|+.++.....
T Consensus 221 l~~aG-f~v~~~~~~~~~ 237 (257)
T d2a14a1 221 VLDAG-FDIEQLLHSPQS 237 (257)
T ss_dssp HHHTT-EEEEEEEEECCC
T ss_pred HHHCC-CEEEEEEEeccc
Confidence 99995 999999876443
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.40 E-value=3e-13 Score=122.32 Aligned_cols=144 Identities=16% Similarity=0.200 Sum_probs=102.8
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcc-eeeeccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRS-YYAAGVPGSFYSS 119 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~-~f~~gvpgsFy~~ 119 (329)
.+..+|||+|||+|..|..++. ++ . -+|...|....+....-+.+..... -|..+ ++.+-
T Consensus 92 ~~~~~vLD~GcG~G~~t~~ll~--------~~-------~-~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~---d~~~~ 152 (254)
T d1xtpa_ 92 HGTSRALDCGAGIGRITKNLLT--------KL-------Y-ATTDLLEPVKHMLEEAKRELAGMPVGKFILA---SMETA 152 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHH--------HH-------C-SEEEEEESCHHHHHHHHHHTTTSSEEEEEES---CGGGC
T ss_pred CCCCeEEEecccCChhhHHHHh--------hc-------C-ceEEEEcCCHHHHHhhhccccccccceeEEc---ccccc
Confidence 4568999999999999988764 21 1 2688999988777766555543222 24443 56454
Q ss_pred cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCC
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDG 199 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~ 199 (329)
-++++++|+|+|..++||+.+ .|+..||+..++.|+|||.+++........
T Consensus 153 ~~~~~~fD~I~~~~vl~hl~d-----------------------------~d~~~~l~~~~~~LkpgG~iii~e~~~~~~ 203 (254)
T d1xtpa_ 153 TLPPNTYDLIVIQWTAIYLTD-----------------------------ADFVKFFKHCQQALTPNGYIFFKENCSTGD 203 (254)
T ss_dssp CCCSSCEEEEEEESCGGGSCH-----------------------------HHHHHHHHHHHHHEEEEEEEEEEEEBC--C
T ss_pred ccCCCccceEEeeccccccch-----------------------------hhhHHHHHHHHHhcCCCcEEEEEecCCCCC
Confidence 578899999999999999753 266799999999999999999976543322
Q ss_pred CcccCCcccchHHHHHHHHHHHHhcCCcCCCc-ccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 200 IPLVNNAAGSFYNTFGSCLVELTKMGILSKEK-MYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 200 ~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~-~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
... .+.+. ..++|.++++++++++| |++++.+.
T Consensus 204 ~~~------------------------~d~~d~~~~rs~~~~~~l~~~aG-f~ii~~~~ 237 (254)
T d1xtpa_ 204 RFL------------------------VDKEDSSLTRSDIHYKRLFNESG-VRVVKEAF 237 (254)
T ss_dssp CEE------------------------EETTTTEEEBCHHHHHHHHHHHT-CCEEEEEE
T ss_pred cce------------------------ecccCCceeCCHHHHHHHHHHcC-CEEEEEEe
Confidence 111 01111 44589999999999985 99887664
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=5.8e-13 Score=118.74 Aligned_cols=149 Identities=13% Similarity=-0.000 Sum_probs=102.9
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhc---CCC-Ccceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKS---LPQ-SRSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~---l~~-~~~~f~~gvpgsFy 117 (329)
+..+|||+|||+|..+..+.+ + .+ .+|+.-|+...+....-+. .+. .+--|..| ++
T Consensus 33 pg~~VLDiGCG~G~~~~~la~--------~-------~~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~---d~- 92 (245)
T d1nkva_ 33 PGTRILDLGSGSGEMLCTWAR--------D-------HG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHN---DA- 92 (245)
T ss_dssp TTCEEEEETCTTCHHHHHHHH--------H-------TC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEES---CC-
T ss_pred CCCEEEEEcCCCCHHHHHHHH--------h-------cC-CEEEEEecccchhhHHHHHHHHhhccccchhhhh---HH-
Confidence 347899999999998887654 2 12 5899999988776543332 221 12345554 56
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
..++|++++|+|+|..++||+.+.+ .+|+..++.|+|||++++...+..
T Consensus 93 ~~~~~~~~fD~v~~~~~~~~~~d~~-------------------------------~~l~~~~r~LkPGG~l~i~~~~~~ 141 (245)
T d1nkva_ 93 AGYVANEKCDVAACVGATWIAGGFA-------------------------------GAEELLAQSLKPGGIMLIGEPYWR 141 (245)
T ss_dssp TTCCCSSCEEEEEEESCGGGTSSSH-------------------------------HHHHHHTTSEEEEEEEEEEEEEET
T ss_pred hhccccCceeEEEEEehhhccCCHH-------------------------------HHHHHHHHHcCcCcEEEEEecccc
Confidence 4568999999999999999987544 789999999999999999988765
Q ss_pred CCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEee
Q 037735 198 DGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMT 259 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~ 259 (329)
..... +.+...|. ......+.+..++...+++.| |++..+....
T Consensus 142 ~~~~~---------~~~~~~~~--------~~~~~~~~~~~~~~~~~~~aG-~~~v~~~~~~ 185 (245)
T d1nkva_ 142 QLPAT---------EEIAQACG--------VSSTSDFLTLPGLVGAFDDLG-YDVVEMVLAD 185 (245)
T ss_dssp TCCSS---------HHHHHTTT--------CSCGGGSCCHHHHHHHHHTTT-BCCCEEEECC
T ss_pred CCCCh---------HHHHHHhc--------cCCCcccCCHHHHHHHHHHcC-CEEEEEEeCC
Confidence 43221 11111111 001133568899999999884 9887766553
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=3.5e-13 Score=118.54 Aligned_cols=145 Identities=15% Similarity=0.123 Sum_probs=105.5
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC---cceeeeccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS---RSYYAAGVPGSFY 117 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~---~~~f~~gvpgsFy 117 (329)
.+..+|||+|||+|.++..+++ + .+ -+|+..|+..++....-+.++.. ..-|..+ ++.
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~--------~-------~~-~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~---d~~ 119 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLL--------P-------LF-REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCC---GLQ 119 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTT--------T-------TC-SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEEC---CGG
T ss_pred CCCCEEEEeccCCCHhhHHHHH--------h-------cC-CEEEEeecCHHHhhccccccccccccccccccc---ccc
Confidence 4567899999999999988753 1 22 27999999998877654444321 1235554 687
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
+..++++++|+|+|..++|++.+ .|+..+|+..++-|+|||.++++.....
T Consensus 120 ~~~~~~~~fD~I~~~~~l~h~~~-----------------------------~~~~~~l~~i~~~Lk~~G~~~i~~~~~~ 170 (222)
T d2ex4a1 120 DFTPEPDSYDVIWIQWVIGHLTD-----------------------------QHLAEFLRRCKGSLRPNGIIVIKDNMAQ 170 (222)
T ss_dssp GCCCCSSCEEEEEEESCGGGSCH-----------------------------HHHHHHHHHHHHHEEEEEEEEEEEEEBS
T ss_pred ccccccccccccccccccccchh-----------------------------hhhhhHHHHHHHhcCCcceEEEEEcccc
Confidence 76688999999999999999753 1456889999999999999999876544
Q ss_pred CCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 198 DGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
+...... ... .++++.+++++++++.| |++++.+..
T Consensus 171 ~~~~~~~------------------~~~------~~~~~~~~~~~l~~~aG-f~ii~~~~q 206 (222)
T d2ex4a1 171 EGVILDD------------------VDS------SVCRDLDVVRRIICSAG-LSLLAEERQ 206 (222)
T ss_dssp SSEEEET------------------TTT------EEEEBHHHHHHHHHHTT-CCEEEEEEC
T ss_pred ccccccc------------------CCc------eeeCCHHHHHHHHHHcC-CEEEEEEEe
Confidence 3221100 001 55679999999999985 999887753
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.38 E-value=5.8e-13 Score=115.60 Aligned_cols=127 Identities=14% Similarity=0.146 Sum_probs=92.5
Q ss_pred HHhHHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCc
Q 037735 12 SNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSD 91 (329)
Q Consensus 12 ~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ 91 (329)
.+...++.-+..+.+++++.+ ++..+|||+|||+|..|..+.+ . ..+|+..|+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~l--------~~~~~ILDiGcG~G~~~~~la~--------~---------~~~v~giD~S~ 69 (226)
T d1ve3a1 15 INSQEYRSRIETLEPLLMKYM--------KKRGKVLDLACGVGGFSFLLED--------Y---------GFEVVGVDISE 69 (226)
T ss_dssp TTSHHHHHHHHHHHHHHHHSC--------CSCCEEEEETCTTSHHHHHHHH--------T---------TCEEEEEESCH
T ss_pred hhHHHHHHHHHHHHHHHHHhc--------CCCCEEEEECCCcchhhhhHhh--------h---------hcccccccccc
Confidence 344555666777777777542 3457999999999999987763 1 14799999998
Q ss_pred chHHhhhhcCCC--CcceeeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHh
Q 037735 92 NDFNTLFKSLPQ--SRSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFN 169 (329)
Q Consensus 92 ndfn~lf~~l~~--~~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~ 169 (329)
++....-+.+.. ...-++.+ ++..-.+|++++|+|+|+.++||++.
T Consensus 70 ~~i~~ak~~~~~~~~~~~~~~~---d~~~l~~~~~~fD~I~~~~~l~~~~~----------------------------- 117 (226)
T d1ve3a1 70 DMIRKAREYAKSRESNVEFIVG---DARKLSFEDKTFDYVIFIDSIVHFEP----------------------------- 117 (226)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEC---CTTSCCSCTTCEEEEEEESCGGGCCH-----------------------------
T ss_pred cchhhhhhhhcccccccccccc---ccccccccCcCceEEEEecchhhCCh-----------------------------
Confidence 887665333211 12234444 45455589999999999999999741
Q ss_pred hcHHHHHHHHHHHhccCceEEEEecc
Q 037735 170 NDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 170 ~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
.|+.++|+..++.|+|||+|++.+..
T Consensus 118 ~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 118 LELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 36778999999999999999998764
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=1.1e-12 Score=119.04 Aligned_cols=188 Identities=10% Similarity=0.116 Sum_probs=114.9
Q ss_pred chHHHhHHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecC
Q 037735 9 SYASNSAYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFND 88 (329)
Q Consensus 9 sY~~nS~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nD 88 (329)
.|-+||.-.+.+..-+.+.+.+.+..+.. ..+..+|||+|||+|..|..++..+. .++. ...+.++..|
T Consensus 9 ~~~~~s~~~~~~~~~~~~~l~~~l~~l~~--~~~~~~VLDiGcG~G~~~~~ll~~l~----~~~~-----~~~~~~~~vD 77 (280)
T d1jqea_ 9 RFLNHSTEHQCMQEFMDKKLPGIIGRIGD--TKSEIKILSIGGGAGEIDLQILSKVQ----AQYP-----GVCINNEVVE 77 (280)
T ss_dssp HHHHTBSHHHHHHHHHHHTHHHHTTTTTT--TCSEEEEEEETCTTSHHHHHHHHHHH----HHST-----TCEEEEEEEC
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHhcc--CCCCCeEEEEcCCCCHHHHHHHHHhh----hhcc-----CCceEEEEEe
Confidence 35555555555555555555444433321 34567999999999999988876442 2322 2346788899
Q ss_pred CCcchHHhhhhcCCCC---cce-ee-eccccc-c---ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHH
Q 037735 89 HSDNDFNTLFKSLPQS---RSY-YA-AGVPGS-F---YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNE 159 (329)
Q Consensus 89 Lp~ndfn~lf~~l~~~---~~~-f~-~gvpgs-F---y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~ 159 (329)
...++....-+.+... ..+ +- ...+.+ + ....++++++|+|+|+.++||+.++
T Consensus 78 ~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~------------------ 139 (280)
T d1jqea_ 78 PSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDI------------------ 139 (280)
T ss_dssp CCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSCCCEEEEEEESCGGGCSCH------------------
T ss_pred CcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCCCceeEEEEccceecCCCH------------------
Confidence 8877766654443321 111 10 001000 1 1245789999999999999997543
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHH
Q 037735 160 VMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKE 239 (329)
Q Consensus 160 ~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE 239 (329)
..+|+...+-|+|||.|++.+...++ .+ ...|..+... ........+.+.++
T Consensus 140 -------------~~~l~~l~~~LkpgG~l~i~~~~~~~-----------~~---~~l~~~~~~~-~~~~~~~~~~~~~~ 191 (280)
T d1jqea_ 140 -------------PATLKFFHSLLGTNAKMLIIVVSGSS-----------GW---DKLWKKYGSR-FPQDDLCQYITSDD 191 (280)
T ss_dssp -------------HHHHHHHHHTEEEEEEEEEEEECTTS-----------HH---HHHHHHHGGG-SCCCTTSCCCCHHH
T ss_pred -------------HHHHHHHHhhCCCCCEEEEEEecCcc-----------hH---HHHHHHHHHh-cCCCcccccCCHHH
Confidence 47899999999999999999875443 11 1222333221 11111145678899
Q ss_pred HHHHHHhCCceEEeE
Q 037735 240 LEGIIQRNGNFTIER 254 (329)
Q Consensus 240 ~~~~i~~~g~f~i~~ 254 (329)
+..++++.| |....
T Consensus 192 ~~~~L~~~G-~~~~~ 205 (280)
T d1jqea_ 192 LTQMLDNLG-LKYEC 205 (280)
T ss_dssp HHHHHHHHT-CCEEE
T ss_pred HHHHHHHCC-CceEE
Confidence 999999885 76543
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.32 E-value=4.9e-11 Score=109.96 Aligned_cols=224 Identities=12% Similarity=0.067 Sum_probs=130.1
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhh---hhcCCCC-cceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTL---FKSLPQS-RSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~l---f~~l~~~-~~~f~~gvpgsF 116 (329)
.+-.+|||+|||.|..++.+.+ ++ + .+|+..|+..+..... .+...-. +..+..+ ++
T Consensus 60 ~~G~~VLDiGCG~G~~~~~~a~--------~~-------g-~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~---d~ 120 (291)
T d1kpia_ 60 EPGMTLLDIGCGWGSTMRHAVA--------EY-------D-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQ---GW 120 (291)
T ss_dssp CTTCEEEEETCTTSHHHHHHHH--------HH-------C-CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEEC---CG
T ss_pred CCCCEEEEecCcchHHHHHHHH--------hc-------C-cceeeccchHHHHHHHHHHHHhhccchhhhhhhh---cc
Confidence 4458999999999998887775 22 1 5788889887654332 2222211 1222232 22
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
.++++++|.|+|--++..+.+.... .-.+-+.+||+..++.|+|||+|++.+++.
T Consensus 121 ---~~~~~~fD~i~sie~~eH~~~~~~~----------------------~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~ 175 (291)
T d1kpia_ 121 ---EEFDEPVDRIVSLGAFEHFADGAGD----------------------AGFERYDTFFKKFYNLTPDDGRMLLHTITI 175 (291)
T ss_dssp ---GGCCCCCSEEEEESCGGGTTCCSSC----------------------CSTTHHHHHHHHHHHTSCTTCEEEEEEEEC
T ss_pred ---cccccccceEeechhHHhcchhhhh----------------------hHHHHHHHHHHHHHHhCCCCCceEEEEEec
Confidence 3678999999999999665432211 012356799999999999999999999987
Q ss_pred CCCCcccCCcccchHHHHHH--HHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEeecCcccccccHHHHhh
Q 037735 197 PDGIPLVNNAAGSFYNTFGS--CLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMTNPKQQVLCSASDLAV 274 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~l~~--a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~~~~~~~~~~~~~~~~ 274 (329)
++.....+............ =++.=+--| -++||+.|+...+++. +|+|++.+.+. ..+++
T Consensus 176 ~~~~~~~~~~~~~p~~~~~~~~fi~kyiFpg------g~lps~~~~~~~~e~~-gl~v~~~~~~~----------~hYa~ 238 (291)
T d1kpia_ 176 PDKEEAQELGLTSPMSLLRFIKFILTEIFPG------GRLPRISQVDYYSSNA-GWKVERYHRIG----------ANYVP 238 (291)
T ss_dssp CCHHHHHHHTCCCCHHHHHHHHHHHHHTCTT------CCCCCHHHHHHHHHHH-TCEEEEEEECG----------GGHHH
T ss_pred cCcchhhhccCCCchhhcccchHHHHHhcCC------CCCCCHHHHHhhhccc-ccccceeeecc----------ccHHH
Confidence 65311000000000000000 011111112 4679999999999887 59998887763 33566
Q ss_pred hHhhhhhhHHhhh--cChHHHHHHHHHHHHHHHHhhhhhhhhcCCCceEEEEEEEe
Q 037735 275 AMRAVYEGLVKEH--FGDEFVDKIFNHFATKAEENISIIGQRVQDSMMDLFILLKR 328 (329)
Q Consensus 275 ~iRa~~e~~~~~~--~g~~~~d~~f~ry~~~~~~~~~~~~~~~~~~~~~~~~~L~r 328 (329)
++++|.+.+.++. .-.-.-+++++++.-.++..-..| +........++|+|
T Consensus 239 TL~~W~~~f~~~~~ei~~l~g~~~~r~W~~yl~~ce~~F---~~~~~~v~q~~l~K 291 (291)
T d1kpia_ 239 TLNAWADALQAHKDEAIALKGQETCDIYMHYLRGCSDLF---RDKYTDVCQFTLVK 291 (291)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTTSSEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH---HCCCCeEEEEEEEC
Confidence 6666665543321 001112345555555555444445 33444555666665
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.28 E-value=1.8e-11 Score=109.86 Aligned_cols=156 Identities=18% Similarity=0.234 Sum_probs=102.0
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC----Ccceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ----SRSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~----~~~~f~~gvpgsF 116 (329)
.+..+|+|+|||+|..+..+.+ + .|..+++.-|+|. +....-+.+.. .+--| ++|+|
T Consensus 79 ~~~~~VLDvGcG~G~~~~~la~--------~-------~p~~~~~~~D~~~-~~~~a~~~~~~~~~~~rv~~---~~~D~ 139 (253)
T d1tw3a2 79 TNVRHVLDVGGGKGGFAAAIAR--------R-------APHVSATVLEMAG-TVDTARSYLKDEGLSDRVDV---VEGDF 139 (253)
T ss_dssp TTCSEEEEETCTTSHHHHHHHH--------H-------CTTCEEEEEECTT-HHHHHHHHHHHTTCTTTEEE---EECCT
T ss_pred ccCCEEEEeCCCCCHHHHHHHH--------h-------cceeEEEEccCHH-HHHHHHHHHHHhhcccchhh---ccccc
Confidence 4567999999999999998875 3 4667899999974 44333322211 11223 34578
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
++. .| .++|+++++..||.+++ .+..++|+..++.|+|||+|++.-...
T Consensus 140 ~~~-~~-~~~D~v~~~~vlh~~~d-----------------------------~~~~~~L~~~~~~LkPGG~l~i~e~~~ 188 (253)
T d1tw3a2 140 FEP-LP-RKADAIILSFVLLNWPD-----------------------------HDAVRILTRCAEALEPGGRILIHERDD 188 (253)
T ss_dssp TSC-CS-SCEEEEEEESCGGGSCH-----------------------------HHHHHHHHHHHHTEEEEEEEEEEECCB
T ss_pred hhh-cc-cchhheeeccccccCCc-----------------------------hhhHHHHHHHHHhcCCCcEEEEEeccC
Confidence 663 34 46999999999996542 134578999999999999999875433
Q ss_pred CCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEeec
Q 037735 197 PDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMTN 260 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~~ 260 (329)
.+.... ......+ -+.-|+.-| -..+|.+|+++++++.| |+++++..+..
T Consensus 189 ~~~~~~-----~~~~~~~--dl~~~~~~~------g~~rt~~e~~~ll~~AG-f~~~~v~~~~~ 238 (253)
T d1tw3a2 189 LHENSF-----NEQFTEL--DLRMLVFLG------GALRTREKWDGLAASAG-LVVEEVRQLPS 238 (253)
T ss_dssp CGGGCC-----SHHHHHH--HHHHHHHHS------CCCCBHHHHHHHHHHTT-EEEEEEEEEEC
T ss_pred CCCCcc-----hhHHHHh--hHHHHhhCC------CcCCCHHHHHHHHHHCC-CeEEEEEECCC
Confidence 221111 0111111 122233333 34589999999999995 99998887643
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.27 E-value=1.4e-10 Score=106.50 Aligned_cols=228 Identities=12% Similarity=0.124 Sum_probs=136.6
Q ss_pred HHHHHHHHHhHhhHHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchH
Q 037735 15 AYQSIQVYILRYDPRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDF 94 (329)
Q Consensus 15 ~~Q~~~~~~~~~~l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndf 94 (329)
..|.+.++.+...+. ..+-.+|||+|||.|..++.+.+ ++ ..+|..-++..+..
T Consensus 45 eAQ~~k~~~~~~~l~----------l~~G~~VLDiGCG~G~~a~~~a~--------~~--------g~~v~git~s~~Q~ 98 (285)
T d1kpga_ 45 EAQIAKIDLALGKLG----------LQPGMTLLDVGCGWGATMMRAVE--------KY--------DVNVVGLTLSKNQA 98 (285)
T ss_dssp HHHHHHHHHHHTTTT----------CCTTCEEEEETCTTSHHHHHHHH--------HH--------CCEEEEEESCHHHH
T ss_pred HHHHHHHHHHHHHcC----------CCCCCEEEEecCcchHHHHHHHh--------cC--------CcceEEEeccHHHH
Confidence 456666666555544 23458999999999999988875 22 15788888876654
Q ss_pred Hhhhhc---CCCC-cceeeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhh
Q 037735 95 NTLFKS---LPQS-RSYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNN 170 (329)
Q Consensus 95 n~lf~~---l~~~-~~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~ 170 (329)
...-+. .... +.-+..+ ++ . ..++++|-++|..++..+.+ +
T Consensus 99 ~~a~~~~~~~g~~~~v~~~~~---d~-~--~~~~~fD~i~si~~~eh~~~-----------------------------~ 143 (285)
T d1kpga_ 99 NHVQQLVANSENLRSKRVLLA---GW-E--QFDEPVDRIVSIGAFEHFGH-----------------------------E 143 (285)
T ss_dssp HHHHHHHHTCCCCSCEEEEES---CG-G--GCCCCCSEEEEESCGGGTCT-----------------------------T
T ss_pred HHHHHHHHhhhhhhhhHHHHh---hh-h--cccccccceeeehhhhhcCc-----------------------------h
Confidence 443222 1111 1223333 44 2 23578999999999988543 2
Q ss_pred cHHHHHHHHHHHhccCceEEEEecccCCCCcccCCcccchHHHHHHH---HHHHHhcCCcCCCcccCCCHHHHHHHHHhC
Q 037735 171 DFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSC---LVELTKMGILSKEKMYNPTPKELEGIIQRN 247 (329)
Q Consensus 171 D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a---~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~ 247 (329)
.+..||+...+.|+|||++++.+++........+... ......... ++.-+=-| -++||.+++..++++.
T Consensus 144 ~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~-~~~~~~~~~~~fi~kyiFpg------g~lPsl~~~~~~~e~a 216 (285)
T d1kpga_ 144 RYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGL-PMSFTFARFLKFIVTEIFPG------GRLPSIPMVQECASAN 216 (285)
T ss_dssp THHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTC-SCHHHHHHHHHHHHHHTSTT------CCCCCHHHHHHHHHTT
T ss_pred hHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccC-CcchhhhchhhHHHHHhccC------CCCCChhhHHHHHHHh
Confidence 4568999999999999999999987543211000000 001111111 11111112 3569999999999888
Q ss_pred CceEEeEEEEeecCcccccccHHHHhhhHhhhhhhHHh------hhcChHHHHHHHHHHHHHHHHhhhhhhhhcCCCceE
Q 037735 248 GNFTIERMEKMTNPKQQVLCSASDLAVAMRAVYEGLVK------EHFGDEFVDKIFNHFATKAEENISIIGQRVQDSMMD 321 (329)
Q Consensus 248 g~f~i~~~e~~~~~~~~~~~~~~~~~~~iRa~~e~~~~------~~~g~~~~d~~f~ry~~~~~~~~~~~~~~~~~~~~~ 321 (329)
+|++++++.+ +..++++++.|.+.+-+ +.++ +++|+|+.--+...-..+ +......
T Consensus 217 -gf~v~~~~~~----------~~hYarTl~~W~~~f~~~~~ei~~~~~----~~~~rrw~~Yl~~c~~~F---~~g~~~v 278 (285)
T d1kpga_ 217 -GFTVTRVQSL----------QPHYAKTLDLWSAALQANKGQAIALQS----EEVYERYMKYLTGCAEMF---RIGYIDV 278 (285)
T ss_dssp -TCEEEEEEEC----------HHHHHHHHHHHHHHHHHTHHHHHHHSC----HHHHHHHHHHHHHHHHHH---HTTSEEE
T ss_pred -chhhcccccc----------hhhHHHHHHHHHHHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHHHH---HCCCCeE
Confidence 5999888766 45567777777665432 2234 456666654444444444 2333445
Q ss_pred EEEEEEe
Q 037735 322 LFILLKR 328 (329)
Q Consensus 322 ~~~~L~r 328 (329)
..++|+|
T Consensus 279 ~q~~~~k 285 (285)
T d1kpga_ 279 NQFTCQK 285 (285)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 5566665
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.26 E-value=1.1e-11 Score=104.71 Aligned_cols=151 Identities=9% Similarity=0.078 Sum_probs=105.5
Q ss_pred HHHHHhhcccCCCCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCc--
Q 037735 28 PRTAVTDLGTNAVPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSR-- 105 (329)
Q Consensus 28 l~~ai~~i~~~~~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~-- 105 (329)
+.+.+..+. .++..||||+|||+|.++..+.+ + .++|+..|+..++-....+......
T Consensus 9 ~~~~~~~l~---~~~~~rvLd~GCG~G~~a~~la~--------~---------G~~V~gvD~S~~~i~~a~~~~~~~~~~ 68 (201)
T d1pjza_ 9 LQQYWSSLN---VVPGARVLVPLCGKSQDMSWLSG--------Q---------GYHVVGAELSEAAVERYFTERGEQPHI 68 (201)
T ss_dssp HHHHHHHHC---CCTTCEEEETTTCCSHHHHHHHH--------H---------CCEEEEEEECHHHHHHHHHHHCSCSEE
T ss_pred HHHHHHHcC---CCCCCEEEEecCcCCHHHHHHHH--------c---------CCceEeecccHHHHHHHHHHhccccch
Confidence 444444442 34567999999999999998874 2 2789999999998877766543211
Q ss_pred -------------ceeeecccccccccc-CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhc
Q 037735 106 -------------SYYAAGVPGSFYSSL-FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNND 171 (329)
Q Consensus 106 -------------~~f~~gvpgsFy~~l-fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D 171 (329)
.-|..+ ++.... .+..++|+++|+.++|++.. .+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~---d~~~l~~~~~~~~D~i~~~~~l~~l~~-----------------------------~~ 116 (201)
T d1pjza_ 69 TSQGDFKVYAAPGIEIWCG---DFFALTARDIGHCAAFYDRAAMIALPA-----------------------------DM 116 (201)
T ss_dssp EEETTEEEEECSSSEEEEE---CCSSSTHHHHHSEEEEEEESCGGGSCH-----------------------------HH
T ss_pred hhhhhhhhccccccceecc---cccccccccccceeEEEEEeeeEecch-----------------------------hh
Confidence 112222 343322 35678999999999999652 25
Q ss_pred HHHHHHHHHHHhccCceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceE
Q 037735 172 FQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFT 251 (329)
Q Consensus 172 ~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~ 251 (329)
+..+++..++.|+|||.+++..+......+. |- .|..+.+|+++++.. .|+
T Consensus 117 ~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~~----------------------~p-----~~~~~~~el~~l~~~--~~~ 167 (201)
T d1pjza_ 117 RERYVQHLEALMPQACSGLLITLEYDQALLE----------------------GP-----PFSVPQTWLHRVMSG--NWE 167 (201)
T ss_dssp HHHHHHHHHHHSCSEEEEEEEEESSCSSSSS----------------------SC-----CCCCCHHHHHHTSCS--SEE
T ss_pred hHHHHHHHHHhcCCCcEEEEEEcccccccCC----------------------Cc-----cccCCHHHHHHHhCC--CcE
Confidence 6688999999999999999988776543221 10 456788999988764 498
Q ss_pred EeEEEEee
Q 037735 252 IERMEKMT 259 (329)
Q Consensus 252 i~~~e~~~ 259 (329)
+..++...
T Consensus 168 i~~~~~~~ 175 (201)
T d1pjza_ 168 VTKVGGQD 175 (201)
T ss_dssp EEEEEESS
T ss_pred EEEEEEec
Confidence 88777653
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.26 E-value=7e-11 Score=103.80 Aligned_cols=146 Identities=15% Similarity=0.117 Sum_probs=98.4
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccC
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLF 121 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lf 121 (329)
++.+|||+|||+|.++..+.+ + . .+|+..|+..++.+..-+..+. ..-|+.+ ++ +.+.
T Consensus 20 ~~~~VLDiGcG~G~~~~~l~~--------~-------g--~~v~giD~s~~~i~~a~~~~~~-~~~~~~~---~~-~~~~ 77 (225)
T d2p7ia1 20 RPGNLLELGSFKGDFTSRLQE--------H-------F--NDITCVEASEEAISHAQGRLKD-GITYIHS---RF-EDAQ 77 (225)
T ss_dssp CSSCEEEESCTTSHHHHHHTT--------T-------C--SCEEEEESCHHHHHHHHHHSCS-CEEEEES---CG-GGCC
T ss_pred CCCcEEEEeCCCcHHHHHHHH--------c-------C--CeEEEEeCcHHHhhhhhccccc-ccccccc---cc-cccc
Confidence 345899999999999988753 1 1 3699999987766655444443 2234443 45 4455
Q ss_pred CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHH-HHhccCceEEEEecccCCCC
Q 037735 122 PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRA-QELVPGGLAALVMFSVPDGI 200 (329)
Q Consensus 122 p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra-~eL~pGG~l~~~~~g~~~~~ 200 (329)
+++++|+|++..+|||++++. .+|+... +.|+|||.++++++....
T Consensus 78 ~~~~fD~I~~~~vleh~~d~~-------------------------------~~l~~i~~~~Lk~gG~l~i~~pn~~~-- 124 (225)
T d2p7ia1 78 LPRRYDNIVLTHVLEHIDDPV-------------------------------ALLKRINDDWLAEGGRLFLVCPNANA-- 124 (225)
T ss_dssp CSSCEEEEEEESCGGGCSSHH-------------------------------HHHHHHHHTTEEEEEEEEEEEECTTC--
T ss_pred cccccccccccceeEecCCHH-------------------------------HHHHHHHHHhcCCCceEEEEeCCccc--
Confidence 679999999999999986533 6677765 789999999999864332
Q ss_pred cccCCcccchHHHHHHHHHHHHhcCCcCCCc-----------ccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 201 PLVNNAAGSFYNTFGSCLVELTKMGILSKEK-----------MYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 201 ~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~-----------~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
++..+ ....|.+.... ...-+.++++..+++. +|+|.+.+.+
T Consensus 125 ---------~~~~~------~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~-Gf~i~~~~~~ 177 (225)
T d2p7ia1 125 ---------VSRQI------AVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRA-GLQVTYRSGI 177 (225)
T ss_dssp ---------HHHHH------HHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHT-TCEEEEEEEE
T ss_pred ---------HHHHH------HHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHC-CCEEEEEEEE
Confidence 11111 11122222221 2233899999999999 4999887754
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=1.2e-11 Score=111.86 Aligned_cols=152 Identities=13% Similarity=0.123 Sum_probs=102.8
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCc---------------
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSR--------------- 105 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~--------------- 105 (329)
.+..+|+|+|||+|..++..+. + .. ..|+..|...++...+-+.+....
T Consensus 53 ~~g~~vLDiGcG~g~~~~~~~~--------~-------~~-~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~ 116 (263)
T d2g72a1 53 VSGRTLIDIGSGPTVYQLLSAC--------S-------HF-EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLI 116 (263)
T ss_dssp SCCSEEEEETCTTCCGGGTTGG--------G-------GC-SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHH
T ss_pred CCCcEEEEeccCCCHHHHHHhc--------c-------cC-CeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhh
Confidence 4568999999999988765542 1 11 268999998887665533332110
Q ss_pred -------------------ceeee--ccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHH
Q 037735 106 -------------------SYYAA--GVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAY 164 (329)
Q Consensus 106 -------------------~~f~~--gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay 164 (329)
.++.+ .-++.+....++++++|+|+++++|||++.-+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~---------------------- 174 (263)
T d2g72a1 117 EGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDL---------------------- 174 (263)
T ss_dssp HCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSH----------------------
T ss_pred ccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCH----------------------
Confidence 00111 11233433446778999999999999986432
Q ss_pred HHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHH
Q 037735 165 AAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGII 244 (329)
Q Consensus 165 ~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i 244 (329)
.|+.++|+..++-|||||.|++......+..... ...+ . .|+.+.+|+++++
T Consensus 175 -----~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~---~~~~--------------~------~~~~t~e~v~~~l 226 (263)
T d2g72a1 175 -----ASFQRALDHITTLLRPGGHLLLIGALEESWYLAG---EARL--------------T------VVPVSEEEVREAL 226 (263)
T ss_dssp -----HHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEET---TEEE--------------E------CCCCCHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHcCCCCEEEEecccCCcccccC---Cccc--------------c------cCCCCHHHHHHHH
Confidence 3577899999999999999999887654422110 0000 0 5668999999999
Q ss_pred HhCCceEEeEEEEee
Q 037735 245 QRNGNFTIERMEKMT 259 (329)
Q Consensus 245 ~~~g~f~i~~~e~~~ 259 (329)
+..| |++++++...
T Consensus 227 ~~aG-f~v~~~~~~~ 240 (263)
T d2g72a1 227 VRSG-YKVRDLRTYI 240 (263)
T ss_dssp HHTT-EEEEEEEEEE
T ss_pred HHCC-CeEEEEEEee
Confidence 9995 9999988753
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.21 E-value=1.1e-11 Score=108.71 Aligned_cols=100 Identities=19% Similarity=0.216 Sum_probs=76.5
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeecccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~l 120 (329)
++..+|||+|||+|.++..+.+ ...+|+..|+...+...+-+... ..++.| ++.+-.
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~-----------------~~~~v~giD~s~~~l~~a~~~~~---~~~~~~---~~~~l~ 97 (246)
T d2avna1 41 KNPCRVLDLGGGTGKWSLFLQE-----------------RGFEVVLVDPSKEMLEVAREKGV---KNVVEA---KAEDLP 97 (246)
T ss_dssp CSCCEEEEETCTTCHHHHHHHT-----------------TTCEEEEEESCHHHHHHHHHHTC---SCEEEC---CTTSCC
T ss_pred CCCCEEEEECCCCchhcccccc-----------------cceEEEEeecccccccccccccc---cccccc---cccccc
Confidence 4567999999999999998853 12589999999887665544332 224443 565545
Q ss_pred CCCCceeEEEec-cceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 121 FPKSSLHFVHSS-YTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 121 fp~~s~dl~~Ss-~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
+|++++|+|+|. .++||+.+ ...+|+..++-|+|||.+++++.
T Consensus 98 ~~~~~fD~ii~~~~~~~~~~d-------------------------------~~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 98 FPSGAFEAVLALGDVLSYVEN-------------------------------KDKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp SCTTCEEEEEECSSHHHHCSC-------------------------------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccccceeeecchhhhhhh-------------------------------HHHHHHHHHhhcCcCcEEEEEEC
Confidence 899999999986 57899754 34789999999999999999985
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=9e-11 Score=106.32 Aligned_cols=102 Identities=20% Similarity=0.176 Sum_probs=79.3
Q ss_pred CCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccc
Q 037735 40 VPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSS 119 (329)
Q Consensus 40 ~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~ 119 (329)
..+..+|||+|||+|..+..+.+ . .|+.+++..|+...+.....+..+. ..|..| +....
T Consensus 82 ~~~~~~iLDiGcG~G~~~~~l~~--------~-------~~~~~~~giD~s~~~~~~a~~~~~~--~~~~~~---d~~~l 141 (268)
T d1p91a_ 82 DDKATAVLDIGCGEGYYTHAFAD--------A-------LPEITTFGLDVSKVAIKAAAKRYPQ--VTFCVA---SSHRL 141 (268)
T ss_dssp CTTCCEEEEETCTTSTTHHHHHH--------T-------CTTSEEEEEESCHHHHHHHHHHCTT--SEEEEC---CTTSC
T ss_pred CCCCCEEEEeCCCCcHHHHHHHH--------H-------CCCCEEEEecchHhhhhhhhccccc--ccceee---ehhhc
Confidence 35678999999999999998875 2 3557899999998877666555543 334444 67666
Q ss_pred cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCC
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDG 199 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~ 199 (329)
.|+++++|++++..++|+ +++.+|.|+|||+|++++++++..
T Consensus 142 ~~~~~sfD~v~~~~~~~~--------------------------------------~~e~~rvLkpgG~l~~~~p~~~~l 183 (268)
T d1p91a_ 142 PFSDTSMDAIIRIYAPCK--------------------------------------AEELARVVKPGGWVITATPGPRHL 183 (268)
T ss_dssp SBCTTCEEEEEEESCCCC--------------------------------------HHHHHHHEEEEEEEEEEEECTTTT
T ss_pred cCCCCCEEEEeecCCHHH--------------------------------------HHHHHHHhCCCcEEEEEeeCCcch
Confidence 699999999999877665 455678899999999999988763
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.13 E-value=1.6e-10 Score=101.99 Aligned_cols=105 Identities=17% Similarity=0.272 Sum_probs=78.5
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--Ccceeeecccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--SRSYYAAGVPGSFYS 118 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--~~~~f~~gvpgsFy~ 118 (329)
.+..+|||+|||||..|..+.+ + ..+|+..|+..++....-+..+. .+..|..| ++ +
T Consensus 40 ~~~~~iLDiGcGtG~~~~~l~~--------~---------~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~---d~-~ 98 (251)
T d1wzna1 40 REVRRVLDLACGTGIPTLELAE--------R---------GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQG---DV-L 98 (251)
T ss_dssp SCCCEEEEETCTTCHHHHHHHH--------T---------TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEES---CG-G
T ss_pred CCCCEEEEeCCCCCccchhhcc--------c---------ceEEEEEeeccccccccccccccccccchheeh---hh-h
Confidence 4456899999999999888764 1 14799999999888776554332 12345554 56 5
Q ss_pred ccCCCCceeEEEec-cceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 119 SLFPKSSLHFVHSS-YTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss-~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
.+-+++++|+|+|. .++||++. .|+..+|+..++.|+|||++++.+..
T Consensus 99 ~l~~~~~fD~I~~~~~~~~~~~~-----------------------------~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 99 EIAFKNEFDAVTMFFSTIMYFDE-----------------------------EDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp GCCCCSCEEEEEECSSGGGGSCH-----------------------------HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hcccccccchHhhhhhhhhcCCh-----------------------------HHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 55455799999996 67888742 26679999999999999999998754
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.09 E-value=4.1e-11 Score=103.22 Aligned_cols=107 Identities=16% Similarity=0.219 Sum_probs=78.8
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--CCcc-eeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--QSRS-YYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~~~~-~f~~gvpgsFy~ 118 (329)
.+-+|||+|||+|.++..+.+ + ..+|+..|+..++...+-+... .... .+.. +++ .
T Consensus 30 ~~grvLDiGcG~G~~~~~la~--------~---------g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~---~d~-~ 88 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAA--------N---------GYDVTAWDKNPASMANLERIKAAEGLDNLQTDL---VDL-N 88 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHH--------T---------TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEE---CCT-T
T ss_pred CCCcEEEECCCCCHHHHHHHH--------H---------hhhhccccCcHHHHHHHHHHhhhccccchhhhh---eec-c
Confidence 346999999999999998864 2 1579999999888776533321 1111 2222 355 5
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCC
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
.+.|++++|+|+++.++|++.+ . ++..+|+..++.|+|||.+++.++....
T Consensus 89 ~~~~~~~fD~I~~~~~~~~~~~---~--------------------------~~~~~l~~~~~~L~pgG~~~~~~~~~~~ 139 (198)
T d2i6ga1 89 TLTFDGEYDFILSTVVMMFLEA---Q--------------------------TIPGLIANMQRCTKPGGYNLIVAAMDTP 139 (198)
T ss_dssp TCCCCCCEEEEEEESCGGGSCT---T--------------------------HHHHHHHHHHHTEEEEEEEEEEEEBC--
T ss_pred cccccccccEEEEeeeeecCCH---H--------------------------HHHHHHHHHHHHcCCCcEEEEEEecCCc
Confidence 6667899999999999999642 1 5668999999999999999998876543
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=1.1e-09 Score=96.41 Aligned_cols=141 Identities=13% Similarity=0.066 Sum_probs=103.2
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC----------------
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS---------------- 104 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~---------------- 104 (329)
+...+|||+|||+|.++..+.+ + ..+|+.-|+........++..+..
T Consensus 44 ~~~~rvLd~GCG~G~~a~~LA~--------~---------G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~ 106 (229)
T d2bzga1 44 KSGLRVFFPLCGKAVEMKWFAD--------R---------GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFK 106 (229)
T ss_dssp CCSCEEEETTCTTCTHHHHHHH--------T---------TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEE
T ss_pred CCCCEEEEeCCCCcHHHHHHHh--------C---------CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceee
Confidence 3457999999999999999975 1 268999999987776665544321
Q ss_pred ----cceeeeccccccccc-cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHH
Q 037735 105 ----RSYYAAGVPGSFYSS-LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTR 179 (329)
Q Consensus 105 ----~~~f~~gvpgsFy~~-lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~r 179 (329)
..-|.++ ++++. ..+.+++|++++..++|.+.. .+...+++.-
T Consensus 107 ~~~~~v~~~~~---d~~~l~~~~~~~fd~i~~~~~l~~~~~-----------------------------~~r~~~~~~~ 154 (229)
T d2bzga1 107 SSSGNISLYCC---SIFDLPRTNIGKFDMIWDRGALVAINP-----------------------------GDRKCYADTM 154 (229)
T ss_dssp ETTSSEEEEES---CGGGGGGSCCCCEEEEEESSSTTTSCG-----------------------------GGHHHHHHHH
T ss_pred ecCCcEEEEEc---chhhccccccCceeEEEEEEEEEeccc-----------------------------hhhHHHHHHH
Confidence 0112332 45443 367889999999999999742 2556889999
Q ss_pred HHHhccCceEEEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEee
Q 037735 180 AQELVPGGLAALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMT 259 (329)
Q Consensus 180 a~eL~pGG~l~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~ 259 (329)
++.|+|||.+++.++..+..... |- .|+.+.+|+++.+.. .|+|..+|..+
T Consensus 155 ~~~LkpgG~~~l~~~~~~~~~~~----------------------gp-----p~~~~~~el~~lf~~--~~~i~~le~~~ 205 (229)
T d2bzga1 155 FSLLGKKFQYLLCVLSYDPTKHP----------------------GP-----PFYVPHAEIERLFGK--ICNIRCLEKVD 205 (229)
T ss_dssp HHTEEEEEEEEEEEEECCTTTCC----------------------CS-----SCCCCHHHHHHHHTT--TEEEEEEEEEE
T ss_pred HhhcCCcceEEEEEcccCCCCCC----------------------CC-----CCCCCHHHHHHHhcC--CCEEEEEEEec
Confidence 99999999999999886542211 10 466799999999965 49998888654
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.05 E-value=6.1e-10 Score=100.20 Aligned_cols=156 Identities=20% Similarity=0.203 Sum_probs=97.7
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhh---hhcCCCC-cceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTL---FKSLPQS-RSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~l---f~~l~~~-~~~f~~gvpgsF 116 (329)
....+|+|+|||+|..+..+.+ + .|..+++.-|+|.. .... ....+.. +..+ ++++|
T Consensus 80 ~~~~~vlDvG~G~G~~~~~l~~--------~-------~P~~~~~~~Dlp~~-~~~a~~~~~~~~~~~ri~~---~~~d~ 140 (256)
T d1qzza2 80 SAVRHVLDVGGGNGGMLAAIAL--------R-------APHLRGTLVELAGP-AERARRRFADAGLADRVTV---AEGDF 140 (256)
T ss_dssp TTCCEEEEETCTTSHHHHHHHH--------H-------CTTCEEEEEECHHH-HHHHHHHHHHTTCTTTEEE---EECCT
T ss_pred ccCCEEEEECCCCCHHHHHHHH--------h-------hcCcEEEEecChHH-HHHHHHHHhhcCCcceeee---eeeec
Confidence 3456899999999998888875 3 46688999999842 2221 2222221 2233 34578
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
+.. .|. +.|+++.+..||=+++ ++...+|+..++.|+|||++++.-.-.
T Consensus 141 ~~~-~p~-~~D~v~~~~vLh~~~d-----------------------------~~~~~lL~~i~~~LkpgG~llI~d~~~ 189 (256)
T d1qzza2 141 FKP-LPV-TADVVLLSFVLLNWSD-----------------------------EDALTILRGCVRALEPGGRLLVLDRAD 189 (256)
T ss_dssp TSC-CSC-CEEEEEEESCGGGSCH-----------------------------HHHHHHHHHHHHHEEEEEEEEEEECCH
T ss_pred ccc-ccc-cchhhhccccccccCc-----------------------------HHHHHHHHHHHhhcCCcceeEEEEecc
Confidence 753 454 5899999999984332 244588999999999999999875432
Q ss_pred CCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEee
Q 037735 197 PDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEKMT 259 (329)
Q Consensus 197 ~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~~ 259 (329)
.+... ....+..+- .+.-|+.-| -..+|.+|+++++++. ||++++.....
T Consensus 190 ~~~~~-----~~~~~~~~~-d~~ml~~~~------g~~rt~~e~~~ll~~A-Gf~~~~~~~~~ 239 (256)
T d1qzza2 190 VEGDG-----ADRFFSTLL-DLRMLTFMG------GRVRTRDEVVDLAGSA-GLALASERTSG 239 (256)
T ss_dssp ------------HHHHHHH-HHHHHHHHS------CCCCCHHHHHHHHHTT-TEEEEEEEEEC
T ss_pred CCCCc-----ccHHHHHHH-HHHHHhhCC------CccCCHHHHHHHHHHC-CCceeEEEEeC
Confidence 22111 011111111 111222222 2347999999999988 49999887653
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.02 E-value=1.1e-10 Score=106.41 Aligned_cols=162 Identities=10% Similarity=0.034 Sum_probs=99.4
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--Ccceeeecccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--SRSYYAAGVPGSFYS 118 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--~~~~f~~gvpgsFy~ 118 (329)
.++.+|+|+|||+|..+..+.+ .+ ++..+|+..|+..++....-+.... ...-|..+ ++.
T Consensus 26 ~~~~~ILDiGcG~G~~~~~la~--------~~------~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~---d~~- 87 (281)
T d2gh1a1 26 TKPVHIVDYGCGYGYLGLVLMP--------LL------PEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEG---DAT- 87 (281)
T ss_dssp CSCCEEEEETCTTTHHHHHHTT--------TS------CTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEES---CTT-
T ss_pred CCcCEEEEecCcCCHHHHHHHH--------hC------CCCCEEEEEecchhHhhhhhccccccccccccccc---ccc-
Confidence 5689999999999999888764 21 1225799999988776665433321 12335554 564
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCC
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
.+-+++++|+|+|+.++||++++ ..+|+..++.|+|||.+++..+...+
T Consensus 88 ~~~~~~~fD~v~~~~~l~~~~d~-------------------------------~~~l~~~~~~LkpgG~lii~~~~~~~ 136 (281)
T d2gh1a1 88 EIELNDKYDIAICHAFLLHMTTP-------------------------------ETMLQKMIHSVKKGGKIICFEPHWIS 136 (281)
T ss_dssp TCCCSSCEEEEEEESCGGGCSSH-------------------------------HHHHHHHHHTEEEEEEEEEEECCHHH
T ss_pred cccccCCceEEEEehhhhcCCCH-------------------------------HHHHHHHHHHcCcCcEEEEEECCccc
Confidence 34345789999999999997643 37899999999999999987743111
Q ss_pred C--CcccCCcc-c--chHHHHHHHHHHHHhc-CCcCCCcccCCCHHHHHHHHHhCCceEEeEEEEe
Q 037735 199 G--IPLVNNAA-G--SFYNTFGSCLVELTKM-GILSKEKMYNPTPKELEGIIQRNGNFTIERMEKM 258 (329)
Q Consensus 199 ~--~~~~~~~~-~--~~~~~l~~a~~~l~~e-G~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~~ 258 (329)
. ........ . .-...++..+...... | .....-.++...+++. ||+-++.+..
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~l~~~l~ea-Gf~~i~~~~~ 195 (281)
T d2gh1a1 137 NMASYLLDGEKQSEFIQLGVLQKLFESDTQRNG------KDGNIGMKIPIYLSEL-GVKNIECRVS 195 (281)
T ss_dssp HHTSEEETTSCHHHHCCHHHHHHHHHHHHHTTC------CCTTGGGTHHHHHHHT-TCEEEEEEEC
T ss_pred cchhhccCchhhhhhhhHHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHc-CCeEEEEEEe
Confidence 0 00000000 0 0112334444443322 2 1112235677888888 4988776653
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=98.99 E-value=2.7e-10 Score=100.79 Aligned_cols=106 Identities=14% Similarity=0.154 Sum_probs=77.9
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--CCcceeeecccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--QSRSYYAAGVPGSFYS 118 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~~~~~f~~gvpgsFy~ 118 (329)
+++.+|||+|||+|..|..+.+ + -.+++.-|+..++.....+..+ ....-|+.| ++.
T Consensus 36 ~~~~~vLDiGCG~G~~~~~l~~--------~---------g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~---d~~- 94 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGNLTENLCP--------K---------FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQ---DIS- 94 (246)
T ss_dssp CCTTEEEEETCTTSTTHHHHGG--------G---------SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECC---CGG-
T ss_pred CCCCeEEEEeCcCCHHHHHHHH--------h---------CCccEeeccchhhhhhccccccccCccceeecc---chh-
Confidence 4567899999999999988863 1 1479999999988776544332 112235554 453
Q ss_pred ccCCCCceeEEEec-cceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 119 SLFPKSSLHFVHSS-YTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss-~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
.+-+++++|+|+|. .+++|+.+. +|+.++|+..++.|+|||.|++.+..
T Consensus 95 ~~~~~~~fD~i~~~~~~~~~~~~~----------------------------~~~~~~l~~~~~~LkpgG~~i~~~~~ 144 (246)
T d1y8ca_ 95 NLNINRKFDLITCCLDSTNYIIDS----------------------------DDLKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp GCCCSCCEEEEEECTTGGGGCCSH----------------------------HHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred hhcccccccccceeeeeeeccCCH----------------------------HHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 33346799999986 678886543 37889999999999999999987754
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=98.99 E-value=8.8e-10 Score=98.20 Aligned_cols=109 Identities=16% Similarity=0.282 Sum_probs=80.0
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhc---CCCC-cceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKS---LPQS-RSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~---l~~~-~~~f~~gvpgsF 116 (329)
++..+|||+|||+|..+..+.+ . .+ -+|+..|+...+....-+. .... ...|..+ +.
T Consensus 23 ~~~~~VLDlGCG~G~~~~~~~~--------~-------~~-~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~---D~ 83 (252)
T d1ri5a_ 23 KRGDSVLDLGCGKGGDLLKYER--------A-------GI-GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQ---DS 83 (252)
T ss_dssp CTTCEEEEETCTTTTTHHHHHH--------H-------TC-SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEES---CT
T ss_pred CCcCEEEEecccCcHHHHHHHH--------c-------CC-CeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEc---ch
Confidence 3457899999999998877753 1 11 3799999999887776433 2221 2234544 44
Q ss_pred ccccC-CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 117 YSSLF-PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 117 y~~lf-p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
+...+ +.+++|+|+|..++||+-+. .+|+..+|+..++.|+|||+|+++++.
T Consensus 84 ~~~~~~~~~~fD~V~~~~~l~~~~~~---------------------------~~~~~~~l~~i~~~Lk~gG~~i~~~~~ 136 (252)
T d1ri5a_ 84 YGRHMDLGKEFDVISSQFSFHYAFST---------------------------SESLDIAQRNIARHLRPGGYFIMTVPS 136 (252)
T ss_dssp TTSCCCCSSCEEEEEEESCGGGGGSS---------------------------HHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred hhhcccccccceEEEEcceeeecCCC---------------------------HHHHHHHHHHHhceeCCCCEEEEEecC
Confidence 44444 68899999999999997532 257789999999999999999998853
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.80 E-value=5.7e-09 Score=92.59 Aligned_cols=110 Identities=11% Similarity=0.034 Sum_probs=75.6
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC-cceeeeccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS-RSYYAAGVPGSFYSS 119 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~-~~~f~~gvpgsFy~~ 119 (329)
.+..+|||+|||||..+..+.+ + .|.-.|+.-|+...+...+-...... ...++.+..... .
T Consensus 73 kpG~~VLDlGcGsG~~~~~la~-~--------------~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~--~ 135 (230)
T d1g8sa_ 73 KRDSKILYLGASAGTTPSHVAD-I--------------ADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKP--Q 135 (230)
T ss_dssp CTTCEEEEESCCSSHHHHHHHH-H--------------TTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCG--G
T ss_pred CCCCEEEEeCEEcCHHHHHHHH-h--------------CCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccC--c
Confidence 3458999999999999888875 2 24468999999987766654433221 223444433322 2
Q ss_pred cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCC
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
..++.+.|+.++...++|.. |...++....+.|+|||.++++...+..
T Consensus 136 ~~~~~~~~v~~i~~~~~~~~-------------------------------~~~~~l~~~~r~LKpgG~~~i~~k~~~~ 183 (230)
T d1g8sa_ 136 EYANIVEKVDVIYEDVAQPN-------------------------------QAEILIKNAKWFLKKGGYGMIAIKARSI 183 (230)
T ss_dssp GGTTTCCCEEEEEECCCSTT-------------------------------HHHHHHHHHHHHEEEEEEEEEEEEGGGT
T ss_pred ccccccceeEEeeccccchH-------------------------------HHHHHHHHHHHhcccCceEEEEeecccc
Confidence 24556777777777777743 2347899999999999999998876543
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.79 E-value=3.6e-08 Score=88.09 Aligned_cols=149 Identities=21% Similarity=0.234 Sum_probs=97.7
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeecccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~l 120 (329)
.+..+|+|+|||+|..+..+++ + .|+++++.-|||.- + ..-..... +..++|+|++.
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~--------~-------~P~l~~~v~Dlp~v----i-~~~~~~~r--i~~~~gd~~~~- 136 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIIS--------K-------YPLIKGINFDLPQV----I-ENAPPLSG--IEHVGGDMFAS- 136 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHH--------H-------CTTCEEEEEECHHH----H-TTCCCCTT--EEEEECCTTTC-
T ss_pred cCCcEEEEecCCCcHHHHHHHH--------H-------CCCCeEEEecchhh----h-hccCCCCC--eEEecCCcccc-
Confidence 4567899999999999998875 4 57789999999841 1 21111112 22356789865
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCCCC
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPDGI 200 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~~~ 200 (329)
.|. -|+++.+..||-.++ ++-.+.|+..++.|+|||++++.=.-.++..
T Consensus 137 ~p~--~D~~~l~~vLh~~~d-----------------------------e~~~~iL~~~~~aL~pgg~llI~e~v~~~~~ 185 (244)
T d1fp1d2 137 VPQ--GDAMILKAVCHNWSD-----------------------------EKCIEFLSNCHKALSPNGKVIIVEFILPEEP 185 (244)
T ss_dssp CCC--EEEEEEESSGGGSCH-----------------------------HHHHHHHHHHHHHEEEEEEEEEEEEEECSSC
T ss_pred ccc--ceEEEEehhhhhCCH-----------------------------HHHHHHHHHHHHHcCCCcEEEEEEEEecCCC
Confidence 463 399999999996443 1334789999999999999999877654322
Q ss_pred cccCCcccchHHHHHHHH--HHH-HhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 201 PLVNNAAGSFYNTFGSCL--VEL-TKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 201 ~~~~~~~~~~~~~l~~a~--~~l-~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
.. .....+...+ .-| ...| --+|.+|+++++++.| |+..++..
T Consensus 186 ~~------~~~~~~~~~~d~~m~~~~~g-------~ert~~e~~~ll~~AG-F~~v~v~~ 231 (244)
T d1fp1d2 186 NT------SEESKLVSTLDNLMFITVGG-------RERTEKQYEKLSKLSG-FSKFQVAC 231 (244)
T ss_dssp CS------SHHHHHHHHHHHHHHHHHSC-------CCEEHHHHHHHHHHTT-CSEEEEEE
T ss_pred CC------chHHHHHHHHHHHHHhhCCC-------cCCCHHHHHHHHHHcC-CCceEEEe
Confidence 11 0011111111 111 2234 2478999999999995 98877643
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=98.77 E-value=7.7e-09 Score=90.15 Aligned_cols=108 Identities=10% Similarity=0.095 Sum_probs=78.5
Q ss_pred EEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CCCcceeeeccccccccccC
Q 037735 45 RIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQSRSYYAAGVPGSFYSSLF 121 (329)
Q Consensus 45 ~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~~~~~f~~gvpgsFy~~lf 121 (329)
.|||+|||+|.++..+.. . .|+..++..|+..+....+.+.. .-..-.|+.|....+ -..+
T Consensus 32 lvLeIGcG~G~~~~~lA~--------~-------~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l-~~~~ 95 (204)
T d2fcaa1 32 IHIEVGTGKGQFISGMAK--------Q-------NPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTL-TDVF 95 (204)
T ss_dssp EEEEECCTTSHHHHHHHH--------H-------CTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGH-HHHC
T ss_pred eEEEEEecCcHHHHHHHH--------h-------CCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhh-hccc
Confidence 589999999999999875 2 57789999999988877765443 212234555432222 2458
Q ss_pred CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhc--HHHHHHHHHHHhccCceEEEEe
Q 037735 122 PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNND--FQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 122 p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D--~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
|++++|.++..+...|..+.. ..+. ...||+.-++.|+|||.|.+.+
T Consensus 96 ~~~~~d~v~i~fp~P~~k~~h-------------------------~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 96 EPGEVKRVYLNFSDPWPKKRH-------------------------EKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CTTSCCEEEEESCCCCCSGGG-------------------------GGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred Cchhhhccccccccccchhhh-------------------------cchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 999999999999999954321 0111 1378999999999999999986
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.74 E-value=8e-09 Score=93.78 Aligned_cols=111 Identities=18% Similarity=0.241 Sum_probs=76.0
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC--cc---eeeecccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS--RS---YYAAGVPGSF 116 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~--~~---~f~~gvpgsF 116 (329)
+..+|||+|||+|..|..+.+ + ..+|+..|+..++.+..-+..... .. .+.. ...+|
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~--------~---------g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~-~~~~~ 117 (292)
T d1xvaa_ 56 GCHRVLDVACGTGVDSIMLVE--------E---------GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVI-EEANW 117 (292)
T ss_dssp TCCEEEESSCTTSHHHHHHHH--------T---------TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEE-EECCG
T ss_pred CCCEEEEecCCCcHHHHHHHH--------c---------CCeeeeccCchHHHHHHHHHHHhcccccccceeee-eeccc
Confidence 346899999999999999864 1 158999999998877654432110 00 0111 11233
Q ss_pred c---cccCCCCceeEEEec-cceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEE
Q 037735 117 Y---SSLFPKSSLHFVHSS-YTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALV 192 (329)
Q Consensus 117 y---~~lfp~~s~dl~~Ss-~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~ 192 (329)
. ..+.+.+++|+|++. .+++++.+.... ..|...+|+..++.|+|||+|++.
T Consensus 118 ~~~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~------------------------~~~~~~~l~~~~~~LkpgG~li~~ 173 (292)
T d1xvaa_ 118 LTLDKDVPAGDGFDAVICLGNSFAHLPDSKGD------------------------QSEHRLALKNIASMVRPGGLLVID 173 (292)
T ss_dssp GGHHHHSCCTTCEEEEEECSSCGGGSCCTTSS------------------------SHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cccccccCCCCCceEEEEecCchhhcCCcccC------------------------hHHHHHHHHHHHHHcCcCcEEEEe
Confidence 2 234567889999875 578887543211 246778999999999999999998
Q ss_pred ec
Q 037735 193 MF 194 (329)
Q Consensus 193 ~~ 194 (329)
+.
T Consensus 174 ~~ 175 (292)
T d1xvaa_ 174 HR 175 (292)
T ss_dssp EE
T ss_pred ec
Confidence 75
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=98.64 E-value=1.8e-08 Score=88.09 Aligned_cols=80 Identities=13% Similarity=0.107 Sum_probs=57.6
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcceeeeccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSYYAAGVPGSFY 117 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~f~~gvpgsFy 117 (329)
.+..+|||+|||||..|..+.+.+ .+...|+..|.........-+.+. -.+..++.| +..
T Consensus 74 ~~g~~VLdiG~GtG~~s~~la~~~--------------~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~---d~~ 136 (213)
T d1dl5a1 74 DKGMRVLEIGGGTGYNAAVMSRVV--------------GEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCG---DGY 136 (213)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHH--------------CTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEES---CGG
T ss_pred cccceEEEecCccchhHHHHHHHh--------------CCCCcEEEeecchhhHHHhhhhHhhhcccccccccC---chH
Confidence 445799999999999999887533 344589999988766665544432 222344544 566
Q ss_pred cccCCCCceeEEEeccceec
Q 037735 118 SSLFPKSSLHFVHSSYTLHW 137 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhW 137 (329)
+-+++.+++|.|++..++++
T Consensus 137 ~~~~~~~~fD~I~~~~~~~~ 156 (213)
T d1dl5a1 137 YGVPEFSPYDVIFVTVGVDE 156 (213)
T ss_dssp GCCGGGCCEEEEEECSBBSC
T ss_pred HccccccchhhhhhhccHHH
Confidence 66777889999999999887
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.61 E-value=4.5e-08 Score=85.17 Aligned_cols=108 Identities=11% Similarity=0.098 Sum_probs=78.5
Q ss_pred EEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcceeeeccccccccccC
Q 037735 45 RIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSYYAAGVPGSFYSSLF 121 (329)
Q Consensus 45 ~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~f~~gvpgsFy~~lf 121 (329)
.|+|+|||+|.++..+.+ . .|+..++..|+..+....+.+... -..-.+..|..-.+ ...+
T Consensus 34 lvLdIGcG~G~~~~~lA~--------~-------~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l-~~~~ 97 (204)
T d1yzha1 34 IHVEVGSGKGAFVSGMAK--------Q-------NPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDL-TDYF 97 (204)
T ss_dssp EEEEESCTTSHHHHHHHH--------H-------CTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCG-GGTS
T ss_pred eEEEEeccCCHHHHHHHH--------H-------CCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHH-hhhc
Confidence 589999999999999875 2 577899999999887777654432 11233555543344 4568
Q ss_pred CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcH--HHHHHHHHHHhccCceEEEEe
Q 037735 122 PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDF--QTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 122 p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~--~~FL~~ra~eL~pGG~l~~~~ 193 (329)
|++|+|.++..+.-.|-.+-.. ++.+ ..||+..++.|+|||.|.+.|
T Consensus 98 ~~~~~~~i~i~fPdPw~K~~h~-------------------------krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 98 EDGEIDRLYLNFSDPWPKKRHE-------------------------KRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CTTCCSEEEEESCCCCCSGGGG-------------------------GGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred cCCceehhcccccccccchhhh-------------------------hhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 9999999999998888443210 0111 378999999999999999876
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=98.60 E-value=8.6e-08 Score=86.10 Aligned_cols=98 Identities=16% Similarity=0.175 Sum_probs=67.8
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--CCcceeeecccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--QSRSYYAAGVPGSFYS 118 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~~~~~f~~gvpgsFy~ 118 (329)
.+..+|+|+|||||.+++.+.+ . . .+|+..|.........-++.. .....|..+ +. .
T Consensus 119 ~~g~~VLDiGcGsG~l~i~aa~--------~-------g--~~V~gvDis~~av~~A~~na~~n~~~~~~~~~---d~-~ 177 (254)
T d2nxca1 119 RPGDKVLDLGTGSGVLAIAAEK--------L-------G--GKALGVDIDPMVLPQAEANAKRNGVRPRFLEG---SL-E 177 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHH--------T-------T--CEEEEEESCGGGHHHHHHHHHHTTCCCEEEES---CH-H
T ss_pred CccCEEEEcccchhHHHHHHHh--------c-------C--CEEEEEECChHHHHHHHHHHHHcCCceeEEec---cc-c
Confidence 3457999999999998876643 1 1 479999998877766554331 112334443 34 3
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
..+|.+++|+++++...+- +..++..-++.|+|||+|+++-
T Consensus 178 ~~~~~~~fD~V~ani~~~~----------------------------------l~~l~~~~~~~LkpGG~lilSg 218 (254)
T d2nxca1 178 AALPFGPFDLLVANLYAEL----------------------------------HAALAPRYREALVPGGRALLTG 218 (254)
T ss_dssp HHGGGCCEEEEEEECCHHH----------------------------------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccccchhhhcccccc----------------------------------HHHHHHHHHHhcCCCcEEEEEe
Confidence 4578899999998743332 2356777889999999999874
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.57 E-value=1.3e-07 Score=84.25 Aligned_cols=148 Identities=17% Similarity=0.250 Sum_probs=95.1
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeecccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~l 120 (329)
.+..+|+|+|||+|..+..+++ + .|+++++.-|||. .....+....+ .-++|+|++.
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~--------~-------~P~l~~~v~Dlp~-----vi~~~~~~~rv--~~~~gD~f~~- 135 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICE--------T-------FPKLKCIVFDRPQ-----VVENLSGSNNL--TYVGGDMFTS- 135 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHH--------H-------CTTCEEEEEECHH-----HHTTCCCBTTE--EEEECCTTTC-
T ss_pred cCceEEEEecCCccHHHHHHHH--------h-------CCCCeEEEecCHH-----HHHhCcccCce--EEEecCcccC-
Confidence 3457899999999999988875 4 5678999999984 12223222222 2255789874
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccC---ceEEEEecccC
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPG---GLAALVMFSVP 197 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pG---G~l~~~~~g~~ 197 (329)
.| ..|+++....||-.++. +-.++|+..++.|+|| |++++.-.-.+
T Consensus 136 ~p--~aD~~~l~~vLHdw~d~-----------------------------~~~~iL~~~~~al~pgg~~~~lli~e~~~~ 184 (244)
T d1fp2a2 136 IP--NADAVLLKYILHNWTDK-----------------------------DCLRILKKCKEAVTNDGKRGKVTIIDMVID 184 (244)
T ss_dssp CC--CCSEEEEESCGGGSCHH-----------------------------HHHHHHHHHHHHHSGGGCCCEEEEEECEEC
T ss_pred CC--CCcEEEEEeecccCChH-----------------------------HHHHHHHHHHHHcCcccCCcEEEEEEeecC
Confidence 34 46999999999954432 3348899999999999 55666543322
Q ss_pred CCCcccCCcccchHHHHHHHHHHH---HhcCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 198 DGIPLVNNAAGSFYNTFGSCLVEL---TKMGILSKEKMYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 198 ~~~~~~~~~~~~~~~~l~~a~~~l---~~eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
+.... .....+ ..+.+| +-.| ..+|.+|+++++++.| |++.++..
T Consensus 185 ~~~~~------~~~~~~-~~~~dl~m~~~~G-------~ert~~e~~~ll~~AG-f~~~~i~~ 232 (244)
T d1fp2a2 185 KKKDE------NQVTQI-KLLMDVNMACLNG-------KERNEEEWKKLFIEAG-FQHYKISP 232 (244)
T ss_dssp TTTSC------HHHHHH-HHHHHHHGGGGTC-------CCEEHHHHHHHHHHTT-CCEEEEEE
T ss_pred CCCCC------chHHHH-HHHHHHHHHhCCC-------cCCCHHHHHHHHHHcC-CceEEEEE
Confidence 21110 011111 112222 2334 2479999999999995 99887653
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.49 E-value=9.3e-07 Score=78.30 Aligned_cols=149 Identities=19% Similarity=0.234 Sum_probs=91.6
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC-CCcceeeeccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP-QSRSYYAAGVPGSFYSS 119 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~-~~~~~f~~gvpgsFy~~ 119 (329)
.+..+|+|+|||+|..+..+++ + .|..+++.-|||.- + .... ..+ +..++++|++.
T Consensus 80 ~~~~~vvDvGGG~G~~~~~l~~--------~-------~P~l~~~v~Dlp~v----i-~~~~~~~r---~~~~~~d~~~~ 136 (243)
T d1kyza2 80 EGLKSLVDVGGGTGAVINTIVS--------K-------YPTIKGINFDLPHV----I-EDAPSYPG---VEHVGGDMFVS 136 (243)
T ss_dssp SSCSEEEEETCTTSHHHHHHHH--------H-------CTTSEEEEEECTTT----T-TTCCCCTT---EEEEECCTTTC
T ss_pred cCCcEEEEecCCCcHHHHHHHH--------H-------CCCCeEEEcccHHh----h-hhcccCCc---eEEeccccccc
Confidence 3457899999999999999986 4 46789999999952 1 1111 112 23356788765
Q ss_pred cCCCCceeEEEecccee-cccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCC
Q 037735 120 LFPKSSLHFVHSSYTLH-WLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alh-WLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
.|.. |+.+-...+| | + .+|..++|+..++.|+|||++++.-.-.++
T Consensus 137 -~P~a--d~~~l~~vlh~~----~--------------------------d~~~~~iL~~~~~al~pgg~~li~d~~~~~ 183 (243)
T d1kyza2 137 -IPKA--DAVFMKWICHDW----S--------------------------DEHCLKFLKNCYEALPDNGKVIVAECILPV 183 (243)
T ss_dssp -CCCC--SCEECSSSSTTS----C--------------------------HHHHHHHHHHHHHHCCSSSCEEEEECEECS
T ss_pred -CCCc--ceEEEEEEeecC----C--------------------------HHHHHHHHHHHHHhcCCCceEEEEEEEecC
Confidence 5654 4444444555 4 1 124568899999999999999887543222
Q ss_pred CCcccCCcccchHHHHHHHHHHHHh--cCCcCCCcccCCCHHHHHHHHHhCCceEEeEEEE
Q 037735 199 GIPLVNNAAGSFYNTFGSCLVELTK--MGILSKEKMYNPTPKELEGIIQRNGNFTIERMEK 257 (329)
Q Consensus 199 ~~~~~~~~~~~~~~~l~~a~~~l~~--eG~i~~~~~y~ps~eE~~~~i~~~g~f~i~~~e~ 257 (329)
.... ...... .+...+.-|+. .| .-+|.+|+++++++.| |+..++..
T Consensus 184 ~~~~---~~~~~~-~~~~d~~ml~~~~~g-------~ert~~e~~~ll~~AG-f~~vkv~~ 232 (243)
T d1kyza2 184 APDS---SLATKG-VVHIDVIMLAHNPGG-------KERTQKEFEDLAKGAG-FQGFKVHC 232 (243)
T ss_dssp SCCC---CHHHHH-HHHHHHHHHHHCSSC-------CCEEHHHHHHHHHHHC-CSCEEEEE
T ss_pred CCCC---chhhHH-HHHHHHHHHhhCCCC-------CcCCHHHHHHHHHHcC-CCcEEEEE
Confidence 1110 000011 11112222332 33 3478999999999995 98887653
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.48 E-value=6.7e-07 Score=78.82 Aligned_cols=110 Identities=11% Similarity=0.053 Sum_probs=75.7
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCc-ceeeecccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSR-SYYAAGVPGSFYSSL 120 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~-~~f~~gvpgsFy~~l 120 (329)
+-.+|||+|||+|..|..+.+.+ .|.-.||.-|+...+...+-+...... ...+.+..+.-..-.
T Consensus 73 pG~~VLDlGaGsG~~t~~la~~V--------------G~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~ 138 (227)
T d1g8aa_ 73 PGKSVLYLGIASGTTASHVSDIV--------------GWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYR 138 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHH--------------CTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGT
T ss_pred CCCEEEEeccCCCHHHHHHHHHh--------------CCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCccccc
Confidence 45799999999999999997644 355689999999877776655443322 234444444433333
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccCC
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVPD 198 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~~ 198 (329)
.+..++|+++...+.+ + +-..+++...+.|+|||.+++++..+..
T Consensus 139 ~~~~~vD~i~~d~~~~-----~----------------------------~~~~~l~~~~~~LkpgG~lvi~~ka~~~ 183 (227)
T d1g8aa_ 139 ALVPKVDVIFEDVAQP-----T----------------------------QAKILIDNAEVYLKRGGYGMIAVKSRSI 183 (227)
T ss_dssp TTCCCEEEEEECCCST-----T----------------------------HHHHHHHHHHHHEEEEEEEEEEEEGGGT
T ss_pred ccccceEEEEEEcccc-----c----------------------------hHHHHHHHHHHhcccCCeEEEEEECCcc
Confidence 4556899988643211 1 2236799999999999999999877543
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=98.45 E-value=2.2e-07 Score=83.21 Aligned_cols=98 Identities=10% Similarity=0.199 Sum_probs=68.7
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---Ccc-eeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---SRS-YYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~~~-~f~~gvpgsFy 117 (329)
+-.+|+|+|||+|..|..+.+.+ .|+-+|+..|.........-+++.. ..+ -+.. +++.
T Consensus 85 pG~rVLEiG~GsG~lt~~la~~v--------------~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~---~Di~ 147 (250)
T d1yb2a1 85 PGMDILEVGVGSGNMSSYILYAL--------------NGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSR---SDIA 147 (250)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHH--------------TTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEEC---SCTT
T ss_pred CcCEEEEeeeeCcHHHHHHHHHh--------------CCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEE---eeee
Confidence 34799999999999999998754 4556899999876555555444322 122 2333 3563
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
..+|++++|.++.. +|.. ..+|...++.|+|||+|++..
T Consensus 148 -~~~~~~~fD~V~ld--------~p~p----------------------------~~~l~~~~~~LKpGG~lv~~~ 186 (250)
T d1yb2a1 148 -DFISDQMYDAVIAD--------IPDP----------------------------WNHVQKIASMMKPGSVATFYL 186 (250)
T ss_dssp -TCCCSCCEEEEEEC--------CSCG----------------------------GGSHHHHHHTEEEEEEEEEEE
T ss_pred -cccccceeeeeeec--------CCch----------------------------HHHHHHHHHhcCCCceEEEEe
Confidence 45788999999853 3422 145899999999999998754
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.45 E-value=5.6e-08 Score=83.09 Aligned_cols=102 Identities=11% Similarity=0.108 Sum_probs=70.8
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhc-----CCCCcceeeeccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKS-----LPQSRSYYAAGVPGS 115 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~-----l~~~~~~f~~gvpgs 115 (329)
.+..+|+|+|||+|..++.+.. . .+ +|+..|+........-++ +...+-.+.. ++
T Consensus 51 ~~~~~VLDiGcG~G~~~~~la~--------~-------~~--~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~---~d 110 (194)
T d1dusa_ 51 DKDDDILDLGCGYGVIGIALAD--------E-------VK--STTMADINRRAIKLAKENIKLNNLDNYDIRVVH---SD 110 (194)
T ss_dssp CTTCEEEEETCTTSHHHHHHGG--------G-------SS--EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEE---CS
T ss_pred CCCCeEEEEeecCChhHHHHHh--------h-------cc--ccceeeeccccchhHHHHHHHhCCccceEEEEE---cc
Confidence 3467999999999999887753 2 22 688889987666554332 2221122333 45
Q ss_pred cccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 116 FYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 116 Fy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
+++ .++++++|+|+|+..+|+..+ .+..+++...+-|+|||.|++..
T Consensus 111 ~~~-~~~~~~fD~Ii~~~p~~~~~~------------------------------~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 111 LYE-NVKDRKYNKIITNPPIRAGKE------------------------------VLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp TTT-TCTTSCEEEEEECCCSTTCHH------------------------------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhh-hhccCCceEEEEcccEEecch------------------------------hhhhHHHHHHHhcCcCcEEEEEE
Confidence 655 568899999999877765221 23478999999999999998865
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.42 E-value=2e-07 Score=81.16 Aligned_cols=108 Identities=10% Similarity=0.048 Sum_probs=67.8
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC-cceeeecccccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS-RSYYAAGVPGSFYSSL 120 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~-~~~f~~gvpgsFy~~l 120 (329)
+-.+|||+|||+|..+..+.+ + .|+-+|+.-|+...+...+-+..... ...++.+.......--
T Consensus 56 pg~~VLDlGcG~G~~~~~la~-~--------------v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~ 120 (209)
T d1nt2a_ 56 GDERVLYLGAASGTTVSHLAD-I--------------VDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYS 120 (209)
T ss_dssp SSCEEEEETCTTSHHHHHHHH-H--------------TTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTT
T ss_pred CCCEEEEeCCcCCHHHHHHHH-h--------------ccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccc
Confidence 457999999999998777754 2 23458999999988877764443211 2334554322211111
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
.....+|++++... || .|...||+...+-|+|||.++++...+.
T Consensus 121 ~~~~~vd~v~~~~~-~~--------------------------------~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 164 (209)
T d1nt2a_ 121 GIVEKVDLIYQDIA-QK--------------------------------NQIEILKANAEFFLKEKGEVVIMVKARS 164 (209)
T ss_dssp TTCCCEEEEEECCC-ST--------------------------------THHHHHHHHHHHHEEEEEEEEEEEEHHH
T ss_pred cccceEEEEEeccc-Ch--------------------------------hhHHHHHHHHHHHhccCCeEEEEEEccc
Confidence 12234555543221 22 1345789999999999999999986643
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.40 E-value=2.1e-07 Score=85.49 Aligned_cols=100 Identities=19% Similarity=0.161 Sum_probs=69.9
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---C-CCcceeeecccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---P-QSRSYYAAGVPGSFYS 118 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~-~~~~~f~~gvpgsFy~ 118 (329)
.-+|||+|||+|.+|+.+++ . .+ .+|+..|..... ...-+.. . ..+-.++. |+..+
T Consensus 34 ~~~VLDiGcG~G~ls~~aa~--------~-------Ga-~~V~avd~s~~~-~~a~~~~~~n~~~~~v~~~~---~~~~~ 93 (316)
T d1oria_ 34 DKVVLDVGSGTGILCMFAAK--------A-------GA-RKVIGIECSSIS-DYAVKIVKANKLDHVVTIIK---GKVEE 93 (316)
T ss_dssp TCEEEEETCTTSHHHHHHHH--------T-------TC-SEEEEEECSTTH-HHHHHHHHHTTCTTTEEEEE---SCTTT
T ss_pred cCEEEEEecCCcHHHHHHHH--------h-------CC-CEEEEEcCcHHH-hhhhhHHHHhCCccccceEe---ccHHH
Confidence 35799999999999887764 1 12 379999976432 3222211 1 11223444 45656
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEE
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAA 190 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~ 190 (329)
--+|.+++|+++|....+.+... .++..++.++.+-|+|||.++
T Consensus 94 ~~~~~~~~D~ivs~~~~~~l~~e----------------------------~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 94 VELPVEKVDIIISEWMGYCLFYE----------------------------SMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp CCCSSSCEEEEEECCCBBTBTBT----------------------------CCHHHHHHHHHHHEEEEEEEE
T ss_pred cccccceeEEEeeeeeeeeeccH----------------------------HHHHHHHHHHHhcCCCCeEEE
Confidence 56899999999999888876532 256789999999999999986
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.39 E-value=1.9e-07 Score=86.12 Aligned_cols=100 Identities=22% Similarity=0.218 Sum_probs=69.8
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhh---hhcCCCC-cceeeecccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTL---FKSLPQS-RSYYAAGVPGSFYS 118 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~l---f~~l~~~-~~~f~~gvpgsFy~ 118 (329)
..+|||+|||+|..|+.+.+ . .. -+|+..|... +-... .+..... ...++.| +..+
T Consensus 39 ~~~VLDlGcGtG~ls~~aa~--------~-------Ga-~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~---~~~~ 98 (328)
T d1g6q1_ 39 DKIVLDVGCGTGILSMFAAK--------H-------GA-KHVIGVDMSS-IIEMAKELVELNGFSDKITLLRG---KLED 98 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHH--------T-------CC-SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEES---CTTT
T ss_pred cCEEEEeCCCCCHHHHHHHH--------h-------CC-CEEEEEeCCH-HHHHHHHHHHHhCccccceEEEe---ehhh
Confidence 46899999999999887764 1 11 3799999764 22221 1111111 2234444 5655
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEE
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAA 190 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~ 190 (329)
..+|++++|+++|....+.+.... ++..++.+|.+-|+|||.++
T Consensus 99 l~~~~~~~D~i~se~~~~~~~~e~----------------------------~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 99 VHLPFPKVDIIISEWMGYFLLYES----------------------------MMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp SCCSSSCEEEEEECCCBTTBSTTC----------------------------CHHHHHHHHHHHEEEEEEEE
T ss_pred ccCcccceeEEEEEecceeeccch----------------------------hHHHHHHHHHhccCCCeEEE
Confidence 568999999999999888866533 56788999999999999985
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.37 E-value=8.8e-07 Score=79.83 Aligned_cols=101 Identities=14% Similarity=0.146 Sum_probs=73.2
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC------CCcceeeecccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP------QSRSYYAAGVPG 114 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~------~~~~~f~~gvpg 114 (329)
.+-.+|+|+|||+|..|..+...+ .|+-+|+--|.-.......-+++. ...-.|..+
T Consensus 95 ~PG~~VLE~G~GsG~lt~~La~~v--------------gp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~--- 157 (264)
T d1i9ga_ 95 FPGARVLEAGAGSGALTLSLLRAV--------------GPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS--- 157 (264)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHH--------------CTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECS---
T ss_pred CCCCEEEecCcCCcHHHHHHHHhh--------------CCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEec---
Confidence 345899999999999999998755 566789999988655444433221 112235554
Q ss_pred ccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 115 SFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 115 sFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
++.+.-+|++++|.++. ++|.+ | .++...++.|+|||+|++..+
T Consensus 158 d~~~~~~~~~~fDaV~l--------dlp~P-~---------------------------~~l~~~~~~LkpGG~lv~~~P 201 (264)
T d1i9ga_ 158 DLADSELPDGSVDRAVL--------DMLAP-W---------------------------EVLDAVSRLLVAGGVLMVYVA 201 (264)
T ss_dssp CGGGCCCCTTCEEEEEE--------ESSCG-G---------------------------GGHHHHHHHEEEEEEEEEEES
T ss_pred ccccccccCCCcceEEE--------ecCCH-H---------------------------HHHHHHHhccCCCCEEEEEeC
Confidence 67677789999999984 35643 1 448899999999999987763
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=4.4e-07 Score=82.92 Aligned_cols=103 Identities=17% Similarity=0.205 Sum_probs=69.3
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhh--hhcCCCC-cceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTL--FKSLPQS-RSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~l--f~~l~~~-~~~f~~gvpgsFy~ 118 (329)
+.-+|||+|||+|.+++.+.+ . .+ .+|+..|...+..... .+..... ...++. ++..+
T Consensus 35 ~~~~VLDiGcG~G~lsl~aa~--------~-------Ga-~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~---~~~~~ 95 (311)
T d2fyta1 35 KDKVVLDVGCGTGILSMFAAK--------A-------GA-KKVLGVDQSEILYQAMDIIRLNKLEDTITLIK---GKIEE 95 (311)
T ss_dssp TTCEEEEETCTTSHHHHHHHH--------T-------TC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEE---SCTTT
T ss_pred CcCEEEEECCCCCHHHHHHHH--------c-------CC-CEEEEEeCHHHHHHHHHHHHHhCCCccceEEE---eeHHH
Confidence 346899999999999888764 1 12 3899999876543221 1111111 123343 45645
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEE
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAAL 191 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~ 191 (329)
--+|+.++|+|+|....|-+... ..+..++.+|.+-|+|||+++-
T Consensus 96 l~~~~~~~D~Ivse~~~~~~~~e----------------------------~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 96 VHLPVEKVDVIISEWMGYFLLFE----------------------------SMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp SCCSCSCEEEEEECCCBTTBTTT----------------------------CHHHHHHHHHHHHEEEEEEEES
T ss_pred hcCccccceEEEEeeeeeecccc----------------------------cccHHHHHHHHhcCCCCcEEec
Confidence 55889999999998777765432 2456789999999999999973
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=1.9e-07 Score=81.85 Aligned_cols=109 Identities=14% Similarity=0.118 Sum_probs=66.2
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--Ccceeeecccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--SRSYYAAGVPGSFYS 118 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--~~~~f~~gvpgsFy~ 118 (329)
....+|||+|||+|..+..+.+ . .+ .+++.-|+.......+-+.... ....+..+. +....
T Consensus 52 ~~g~~VLdIGcG~G~~a~~~a~--------~-------~~-~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~ 114 (229)
T d1zx0a1 52 SKGGRVLEVGFGMAIAASKVQE--------A-------PI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGL-WEDVA 114 (229)
T ss_dssp TTCEEEEEECCTTSHHHHHHHT--------S-------CE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESC-HHHHG
T ss_pred cCCCeEEEeeccchHHHHHHHH--------c-------CC-CeEEEeCCCHHHHHHHHHHhhhccccccccccc-ccccc
Confidence 4457999999999988877653 1 23 3788999987766554333221 111222221 12223
Q ss_pred ccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEE
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALV 192 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~ 192 (329)
.-+|++++|+++.-.......-.. ..|...||+..++.|+|||+|++.
T Consensus 115 ~~~~~~~fD~i~fD~~~~~~~~~~--------------------------~~~~~~~~~~~~r~LkpGG~~~~~ 162 (229)
T d1zx0a1 115 PTLPDGHFDGILYDTYPLSEETWH--------------------------THQFNFIKNHAFRLLKPGGVLTYC 162 (229)
T ss_dssp GGSCTTCEEEEEECCCCCBGGGTT--------------------------THHHHHHHHTHHHHEEEEEEEEEC
T ss_pred cccccccccceeeccccccccccc--------------------------ccCHHHHHHHHHHHcCCCcEEEEE
Confidence 347889999987322111111000 125568999999999999998763
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=6.5e-07 Score=78.59 Aligned_cols=98 Identities=17% Similarity=0.178 Sum_probs=69.0
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--------Ccceeeeccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--------SRSYYAAGVP 113 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--------~~~~f~~gvp 113 (329)
+..+|||+|||||..|..+.+-+ .|.-+|+..|.........-+.+.. ....+..
T Consensus 76 ~g~~VLdiG~GsGy~ta~la~l~--------------~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~--- 138 (224)
T d1i1na_ 76 EGAKALDVGSGSGILTACFARMV--------------GCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVV--- 138 (224)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHH--------------CTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEE---
T ss_pred CCCeEEEecCCCCHHHHHHHHHh--------------CCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEE---
Confidence 45799999999999998887532 3446899999887665554333321 1122344
Q ss_pred cccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 114 GSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 114 gsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
|+.+.-.++.+++|.|++..++++ +|. .-.+.|+|||+|++..
T Consensus 139 gD~~~~~~~~~~fD~I~~~~~~~~---ip~----------------------------------~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 139 GDGRMGYAEEAPYDAIHVGAAAPV---VPQ----------------------------------ALIDQLKPGGRLILPV 181 (224)
T ss_dssp SCGGGCCGGGCCEEEEEECSBBSS---CCH----------------------------------HHHHTEEEEEEEEEEE
T ss_pred eecccccchhhhhhhhhhhcchhh---cCH----------------------------------HHHhhcCCCcEEEEEE
Confidence 456666778889999999999886 551 2246799999999865
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.25 E-value=8e-07 Score=75.22 Aligned_cols=101 Identities=18% Similarity=0.216 Sum_probs=71.7
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---Ccce-eeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---SRSY-YAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~~~~-f~~gvpgsF 116 (329)
.+-.+|+|+|||+|..|+.+.. . . -+|+.-|...+.....-+++.. ..++ +.. |++
T Consensus 32 ~~g~~VLDiGcGsG~~s~~lA~--------~-------~--~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~---gda 91 (186)
T d1l3ia_ 32 GKNDVAVDVGCGTGGVTLELAG--------R-------V--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLME---GDA 91 (186)
T ss_dssp CTTCEEEEESCTTSHHHHHHHT--------T-------S--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEE---SCH
T ss_pred CCCCEEEEEECCeEcccccccc--------c-------c--eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEE---Cch
Confidence 4557899999999999987753 1 1 3799999988777766554321 1122 343 467
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
.+-+++..++|++++.-.. .++..+++...+.|+|||+|++....
T Consensus 92 ~~~~~~~~~~D~v~~~~~~----------------------------------~~~~~~~~~~~~~LkpgG~lvi~~~~ 136 (186)
T d1l3ia_ 92 PEALCKIPDIDIAVVGGSG----------------------------------GELQEILRIIKDKLKPGGRIIVTAIL 136 (186)
T ss_dssp HHHHTTSCCEEEEEESCCT----------------------------------TCHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred hhcccccCCcCEEEEeCcc----------------------------------ccchHHHHHHHHHhCcCCEEEEEeec
Confidence 7777888999999975321 12346788999999999999987643
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=98.03 E-value=5e-06 Score=74.72 Aligned_cols=99 Identities=17% Similarity=0.184 Sum_probs=67.5
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---Ccce-eeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---SRSY-YAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~~~~-f~~gvpgsF 116 (329)
.+..+|+|+|||+|..|..+...+ .|.-+|+..|.........-+++.. ...+ +.. ++.
T Consensus 102 ~pG~~VLDiG~GsG~lt~~lA~~~--------------~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~---~d~ 164 (266)
T d1o54a_ 102 KEGDRIIDTGVGSGAMCAVLARAV--------------GSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKV---RDI 164 (266)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHT--------------TTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEEC---CCG
T ss_pred CCCCEEEECCCCCCHHHHHHHHHh--------------CCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEe---ccc
Confidence 446899999999999999987533 4556899999987666655443321 1122 222 333
Q ss_pred ccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 117 YSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
..-++..++|.++- ++|.. ..+|....+.|+|||+|++..
T Consensus 165 -~~~~~~~~~D~V~~--------d~p~p----------------------------~~~l~~~~~~LKpGG~lv~~~ 204 (266)
T d1o54a_ 165 -SEGFDEKDVDALFL--------DVPDP----------------------------WNYIDKCWEALKGGGRFATVC 204 (266)
T ss_dssp -GGCCSCCSEEEEEE--------CCSCG----------------------------GGTHHHHHHHEEEEEEEEEEE
T ss_pred -cccccccceeeeEe--------cCCCH----------------------------HHHHHHHHhhcCCCCEEEEEe
Confidence 34567788998863 23422 155999999999999998765
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=97.92 E-value=7.8e-06 Score=73.79 Aligned_cols=119 Identities=14% Similarity=0.165 Sum_probs=73.3
Q ss_pred CCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CCCcceeeecccccc
Q 037735 40 VPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQSRSYYAAGVPGSF 116 (329)
Q Consensus 40 ~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~~~~~f~~gvpgsF 116 (329)
..++.+|+|+|||||..++.+.. . .|..+|+..|....-.+..-++. .-.+--|+. +++
T Consensus 106 ~~~~~~vlDlGtGSG~I~i~la~--------~-------~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~---~d~ 167 (274)
T d2b3ta1 106 PEQPCRILDLGTGTGAIALALAS--------E-------RPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQ---SDW 167 (274)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHH--------H-------CTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEEC---CST
T ss_pred cccccceeeeehhhhHHHHHHHh--------h-------CCcceeeeccchhHHHhHHHHHHHHhCcccceeee---ccc
Confidence 34568899999999999988865 2 45679999999865555544432 111122444 466
Q ss_pred ccccCCCCceeEEEeccce----------ecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccC
Q 037735 117 YSSLFPKSSLHFVHSSYTL----------HWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPG 186 (329)
Q Consensus 117 y~~lfp~~s~dl~~Ss~al----------hWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pG 186 (329)
++. +|.+.+|+++|+=-. .++..-|..... +.. -.-..+.++++.-.+-|+||
T Consensus 168 ~~~-~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~--------~g~--------dGl~~~~~i~~~a~~~L~~~ 230 (274)
T d2b3ta1 168 FSA-LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALV--------AAD--------SGMADIVHIIEQSRNALVSG 230 (274)
T ss_dssp TGG-GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTB--------CHH--------HHTHHHHHHHHHHGGGEEEE
T ss_pred ccc-cCCCceeEEEecchhhhhhhhcccccccccchhhhcc--------ccc--------ccchHHHHHHHHHHHhcCCC
Confidence 654 467899999998110 111111111000 000 11234557888889999999
Q ss_pred ceEEEEe
Q 037735 187 GLAALVM 193 (329)
Q Consensus 187 G~l~~~~ 193 (329)
|.|++-.
T Consensus 231 G~l~lEi 237 (274)
T d2b3ta1 231 GFLLLEH 237 (274)
T ss_dssp EEEEEEC
T ss_pred CEEEEEE
Confidence 9999953
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=97.92 E-value=1e-05 Score=70.89 Aligned_cols=77 Identities=14% Similarity=0.021 Sum_probs=48.8
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcc-eeeeccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRS-YYAAGVPGSFYSS 119 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~-~f~~gvpgsFy~~ 119 (329)
.+..+|||+|||||..|..+.. + . -+|+..|...+-....-+.+....+ .+..| +.+.-
T Consensus 69 ~~g~~VLdIG~GsGy~ta~La~-l--------------~--~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~---d~~~g 128 (224)
T d1vbfa_ 69 HKGQKVLEIGTGIGYYTALIAE-I--------------V--DKVVSVEINEKMYNYASKLLSYYNNIKLILG---DGTLG 128 (224)
T ss_dssp CTTCEEEEECCTTSHHHHHHHH-H--------------S--SEEEEEESCHHHHHHHHHHHTTCSSEEEEES---CGGGC
T ss_pred cccceEEEecCCCCHHHHHHHH-H--------------h--cccccccccHHHHHHHHHHHhcccccccccC---chhhc
Confidence 3457999999999999987653 2 1 3688888766555544333332222 34444 34333
Q ss_pred cCCCCceeEEEeccceec
Q 037735 120 LFPKSSLHFVHSSYTLHW 137 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhW 137 (329)
..+.+.+|.|+...++++
T Consensus 129 ~~~~~pfD~Iiv~~a~~~ 146 (224)
T d1vbfa_ 129 YEEEKPYDRVVVWATAPT 146 (224)
T ss_dssp CGGGCCEEEEEESSBBSS
T ss_pred chhhhhHHHHHhhcchhh
Confidence 344567999999988765
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=3.6e-05 Score=70.73 Aligned_cols=101 Identities=12% Similarity=0.089 Sum_probs=66.2
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhc------------CCCCcceee
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKS------------LPQSRSYYA 109 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~------------l~~~~~~f~ 109 (329)
+..+|+|+|||+|..++.+.. . .+-..++.-|+..+.....-+. +....--|.
T Consensus 151 ~~~~vlD~GcG~G~~~~~~a~--------~-------~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~ 215 (328)
T d1nw3a_ 151 DDDLFVDLGSGVGQVVLQVAA--------A-------TNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLE 215 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHH--------H-------CCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEE
T ss_pred CCCEEEEcCCCCCHHHHHHHH--------H-------hCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEE
Confidence 457899999999999988764 2 2224789999987654432111 111122355
Q ss_pred eccccccccccCCCCc--eeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCc
Q 037735 110 AGVPGSFYSSLFPKSS--LHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGG 187 (329)
Q Consensus 110 ~gvpgsFy~~lfp~~s--~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG 187 (329)
.| +|.+--+.++. .|++++++.+|| | |+...|....++|+|||
T Consensus 216 ~g---d~~~~~~~~~~~~advi~~~~~~f~----~----------------------------~~~~~l~e~~r~LKpGg 260 (328)
T d1nw3a_ 216 RG---DFLSEEWRERIANTSVIFVNNFAFG----P----------------------------EVDHQLKERFANMKEGG 260 (328)
T ss_dssp EC---CTTSHHHHHHHHHCSEEEECCTTTC----H----------------------------HHHHHHHHHHTTCCTTC
T ss_pred EC---cccccccccccCcceEEEEcceecc----h----------------------------HHHHHHHHHHHhCCCCc
Confidence 54 56544344433 478887776666 2 44577999999999999
Q ss_pred eEEEE
Q 037735 188 LAALV 192 (329)
Q Consensus 188 ~l~~~ 192 (329)
+++..
T Consensus 261 ~iv~~ 265 (328)
T d1nw3a_ 261 RIVSS 265 (328)
T ss_dssp EEEES
T ss_pred EEEEe
Confidence 99865
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.84 E-value=6.8e-06 Score=70.07 Aligned_cols=116 Identities=14% Similarity=0.204 Sum_probs=69.6
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---------CCC--cceee
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---------PQS--RSYYA 109 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---------~~~--~~~f~ 109 (329)
..++||++.|||||-=.-.+.-.+- +.... ....++++..|+...-....-+.. ++. ..||.
T Consensus 23 ~~~lrIwsaGCstGeE~YSlA~~l~----e~~~~---~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~ 95 (193)
T d1af7a2 23 HGEYRVWSAAASTGEEPYSIAITLA----DALGM---APGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFM 95 (193)
T ss_dssp CSCEEEEESCCTTTHHHHHHHHHHH----HHHCS---CTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEE
T ss_pred CCCeEEEEeCCCCchhHHHHHHHHH----Hhhhh---cCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhcee
Confidence 5689999999999985433332221 12111 134589999999765554432211 110 12332
Q ss_pred ecccc---c------------cc------cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHH
Q 037735 110 AGVPG---S------------FY------SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQF 168 (329)
Q Consensus 110 ~gvpg---s------------Fy------~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~ 168 (329)
-...+ . |. ....|.+.+|+|+|-+.|..++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~--------------------------- 148 (193)
T d1af7a2 96 RGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKT--------------------------- 148 (193)
T ss_dssp ECCTTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHH---------------------------
T ss_pred ecCCCccceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHH---------------------------
Confidence 21110 0 11 112345789999999999997632
Q ss_pred hhcHHHHHHHHHHHhccCceEEEE
Q 037735 169 NNDFQTFLNTRAQELVPGGLAALV 192 (329)
Q Consensus 169 ~~D~~~FL~~ra~eL~pGG~l~~~ 192 (329)
...+.|+.-++.|+|||+|+++
T Consensus 149 --~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 149 --TQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp --HHHHHHHHHGGGEEEEEEEEEC
T ss_pred --HHHHHHHHHHHHhCCCcEEEEe
Confidence 2237799999999999998754
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=1.4e-05 Score=73.68 Aligned_cols=100 Identities=10% Similarity=0.084 Sum_probs=61.8
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC------------C--Ccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP------------Q--SRS 106 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~------------~--~~~ 106 (329)
.+..+|+|+|||+|..|..+...+ .|+-+|+--|.........-+++. . ..-
T Consensus 97 ~pG~rVLE~GtGsG~lt~~LAr~v--------------g~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv 162 (324)
T d2b25a1 97 NPGDTVLEAGSGSGGMSLFLSKAV--------------GSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNV 162 (324)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHH--------------CTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCE
T ss_pred CCCCEEEEecccccHHHHHHHHHh--------------CCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccce
Confidence 345799999999999999998755 455689999986533333222221 0 011
Q ss_pred eeeeccccccccc--cCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhc
Q 037735 107 YYAAGVPGSFYSS--LFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELV 184 (329)
Q Consensus 107 ~f~~gvpgsFy~~--lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~ 184 (329)
-|..+ ++.+. -+++.++|.++- ++|.+ | ..|...++.|+
T Consensus 163 ~~~~~---di~~~~~~~~~~~fD~V~L--------D~p~P-~---------------------------~~l~~~~~~LK 203 (324)
T d2b25a1 163 DFIHK---DISGATEDIKSLTFDAVAL--------DMLNP-H---------------------------VTLPVFYPHLK 203 (324)
T ss_dssp EEEES---CTTCCC-------EEEEEE--------CSSST-T---------------------------TTHHHHGGGEE
T ss_pred eEEec---chhhcccccCCCCcceEee--------cCcCH-H---------------------------HHHHHHHHhcc
Confidence 23333 33332 246788998873 56643 1 24888999999
Q ss_pred cCceEEEEe
Q 037735 185 PGGLAALVM 193 (329)
Q Consensus 185 pGG~l~~~~ 193 (329)
|||+|++.+
T Consensus 204 pGG~lv~~~ 212 (324)
T d2b25a1 204 HGGVCAVYV 212 (324)
T ss_dssp EEEEEEEEE
T ss_pred CCCEEEEEe
Confidence 999999866
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.80 E-value=2.1e-05 Score=74.70 Aligned_cols=40 Identities=15% Similarity=0.030 Sum_probs=30.5
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHh
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNT 96 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~ 96 (329)
+..+|+|+|||+|..++.+.... +..+++..|+..++...
T Consensus 216 pgd~fLDLGCG~G~~vl~aA~~~---------------g~~~v~GIDiS~~~i~~ 255 (406)
T d1u2za_ 216 KGDTFMDLGSGVGNCVVQAALEC---------------GCALSFGCEIMDDASDL 255 (406)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHH---------------CCSEEEEEECCHHHHHH
T ss_pred CCCEEEeCCCCCcHHHHHHHHHc---------------CCCeEEEEeCCHHHHHH
Confidence 34689999999999999887522 22379999999766544
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.48 E-value=0.0001 Score=64.13 Aligned_cols=104 Identities=15% Similarity=0.140 Sum_probs=64.6
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--------Ccceeeeccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--------SRSYYAAGVP 113 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--------~~~~f~~gvp 113 (329)
+..+|||+|||||..|..+..-+ ... +..+...|+.-|.-..-+....+.+.. .+-.+..|
T Consensus 80 ~g~~VLeIGtGsGY~ta~la~l~--------g~~-g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~-- 148 (223)
T d1r18a_ 80 PGARILDVGSGSGYLTACFYRYI--------KAK-GVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG-- 148 (223)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHH--------HHS-CCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES--
T ss_pred CCCeEEEecCCCCHHHHHHHHHh--------hhc-cCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEec--
Confidence 45799999999999999886422 111 112234677777654333333222210 11234443
Q ss_pred cccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 114 GSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 114 gsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
+..+-..+.+.+|.|+...++. ++|. .-.+-|+|||+|++-.
T Consensus 149 -d~~~~~~~~~~fD~Iiv~~a~~---~~p~----------------------------------~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 149 -DGRKGYPPNAPYNAIHVGAAAP---DTPT----------------------------------ELINQLASGGRLIVPV 190 (223)
T ss_dssp -CGGGCCGGGCSEEEEEECSCBS---SCCH----------------------------------HHHHTEEEEEEEEEEE
T ss_pred -ccccccccccceeeEEEEeech---hchH----------------------------------HHHHhcCCCcEEEEEE
Confidence 5555566778899999999874 5661 1246899999998765
Q ss_pred c
Q 037735 194 F 194 (329)
Q Consensus 194 ~ 194 (329)
.
T Consensus 191 g 191 (223)
T d1r18a_ 191 G 191 (223)
T ss_dssp S
T ss_pred e
Confidence 4
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=97.40 E-value=0.00014 Score=66.36 Aligned_cols=115 Identities=12% Similarity=0.013 Sum_probs=75.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--C-Ccceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--Q-SRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~-~~~~f~~gvpgsFy~ 118 (329)
...+|+|++||||..|+.+.. . -.+|+..|.........-+++. . ...-|+.+...++.+
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~--------g---------~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~ 207 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLAL--------G---------FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLR 207 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHH--------H---------EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHH
T ss_pred CCCeeeccCCCCcHHHHHHHh--------c---------CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhh
Confidence 347999999999999987653 1 1479999998766666544431 1 123456665445545
Q ss_pred cc-CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 119 SL-FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 119 ~l-fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
++ -....+|+|+.. +|+. +.+... .....+++..++....+-|+|||.|++++..
T Consensus 208 ~~~~~~~~fD~Vi~D--------pP~~---------~~~~~~-----~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs 263 (318)
T d1wxxa2 208 RLEKEGERFDLVVLD--------PPAF---------AKGKKD-----VERAYRAYKEVNLRAIKLLKEGGILATASCS 263 (318)
T ss_dssp HHHHTTCCEEEEEEC--------CCCS---------CCSTTS-----HHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hhHhhhcCCCEEEEc--------CCcc---------ccchHH-----HHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 44 356789999864 4533 111111 1233456678899999999999999998754
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.16 E-value=0.00026 Score=61.21 Aligned_cols=80 Identities=11% Similarity=0.102 Sum_probs=49.9
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhh---hhcCCCCcceeeeccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTL---FKSLPQSRSYYAAGVPGSFY 117 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~l---f~~l~~~~~~f~~gvpgsFy 117 (329)
.+..+|||+|||||..|..+..-+ . -+|+.-|.-..-.... ++.+.-.+..+..| +.+
T Consensus 77 ~~g~~VLeIGsGsGY~taila~l~--------------g--~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~g---d~~ 137 (215)
T d1jg1a_ 77 KPGMNILEVGTGSGWNAALISEIV--------------K--TDVYTIERIPELVEFAKRNLERAGVKNVHVILG---DGS 137 (215)
T ss_dssp CTTCCEEEECCTTSHHHHHHHHHH--------------C--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEES---CGG
T ss_pred CccceEEEecCCCChhHHHHHHhh--------------C--ceeEEEeccHHHHHHHHHHHHHcCCceeEEEEC---ccc
Confidence 345799999999999998775411 1 2466666543322222 22233233456665 444
Q ss_pred cccCCCCceeEEEeccceecccCCC
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVP 142 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p 142 (329)
.-..+.+.+|.|+...++.. +|
T Consensus 138 ~g~~~~~pfD~Iiv~~a~~~---ip 159 (215)
T d1jg1a_ 138 KGFPPKAPYDVIIVTAGAPK---IP 159 (215)
T ss_dssp GCCGGGCCEEEEEECSBBSS---CC
T ss_pred cCCcccCcceeEEeeccccc---CC
Confidence 55566788999999999864 66
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=97.13 E-value=0.00042 Score=57.42 Aligned_cols=72 Identities=10% Similarity=0.037 Sum_probs=42.5
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CCCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~~~~~f~~gvpgsFy~ 118 (329)
+.-+|+|+|||+|..++..++ + . .++++.|.-....+.+-+++ .-...+.. ...-.|..
T Consensus 41 ~g~~vLDl~~G~G~~~i~a~~--------~-------g--a~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~-~~~d~~~~ 102 (171)
T d1ws6a1 41 RRGRFLDPFAGSGAVGLEAAS--------E-------G--WEAVLVEKDPEAVRLLKENVRRTGLGARVVA-LPVEVFLP 102 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHH--------T-------T--CEEEEECCCHHHHHHHHHHHHHHTCCCEEEC-SCHHHHHH
T ss_pred CCCeEEEeccccchhhhhhhh--------c-------c--chhhhcccCHHHHhhhhHHHHhhccccceee-eehhcccc
Confidence 346899999999998876654 1 1 46778999876666554443 11112221 11112222
Q ss_pred cc-CCCCceeEEEe
Q 037735 119 SL-FPKSSLHFVHS 131 (329)
Q Consensus 119 ~l-fp~~s~dl~~S 131 (329)
.. .+..++|+|+.
T Consensus 103 ~~~~~~~~fD~If~ 116 (171)
T d1ws6a1 103 EAKAQGERFTVAFM 116 (171)
T ss_dssp HHHHTTCCEEEEEE
T ss_pred cccccCCccceeEE
Confidence 22 45678999974
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.12 E-value=0.00093 Score=59.13 Aligned_cols=101 Identities=8% Similarity=-0.044 Sum_probs=66.9
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--CC--cceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--QS--RSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~~--~~~f~~gvpgsFy 117 (329)
+..+|+|+|||+|+.|+.+++ + ...+|+..|+-.+-+..+-+++. .. +-.++.| +.
T Consensus 107 ~g~~VlD~~aG~G~~~l~~a~--------~--------~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~---D~- 166 (260)
T d2frna1 107 PDELVVDMFAGIGHLSLPIAV--------Y--------GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNM---DN- 166 (260)
T ss_dssp TTCEEEETTCTTTTTHHHHHH--------H--------TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS---CT-
T ss_pred CccEEEECcceEcHHHHHHHH--------h--------CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEc---ch-
Confidence 357899999999999998874 2 11479999998777666655432 11 1234444 44
Q ss_pred cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecccC
Q 037735 118 SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSVP 197 (329)
Q Consensus 118 ~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~~ 197 (329)
..+.+.+.+|.|+.. +|.. + ..||..-.+-|+|||++.+-.+...
T Consensus 167 ~~~~~~~~~D~Ii~~--------~p~~------------~---------------~~~l~~a~~~l~~gG~lh~~~~~~~ 211 (260)
T d2frna1 167 RDFPGENIADRILMG--------YVVR------------T---------------HEFIPKALSIAKDGAIIHYHNTVPE 211 (260)
T ss_dssp TTCCCCSCEEEEEEC--------CCSS------------G---------------GGGHHHHHHHEEEEEEEEEEEEEEG
T ss_pred HHhccCCCCCEEEEC--------CCCc------------h---------------HHHHHHHHhhcCCCCEEEEEecccc
Confidence 234567889988753 3322 0 1456666778999999988766544
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.06 E-value=0.00043 Score=63.15 Aligned_cols=116 Identities=15% Similarity=0.027 Sum_probs=71.6
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC--C--Ccceeeecccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP--Q--SRSYYAAGVPGSFYS 118 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~--~--~~~~f~~gvpgsFy~ 118 (329)
-.+|||+|||+|..|+.++. . .+ .+|+..|+...-....-+++. . .+..|..|.--++..
T Consensus 146 g~~VLDl~~g~G~~si~~a~--------~-------ga-~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~ 209 (324)
T d2as0a2 146 GDRVLDVFTYTGGFAIHAAI--------A-------GA-DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEME 209 (324)
T ss_dssp TCEEEETTCTTTHHHHHHHH--------T-------TC-SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH
T ss_pred CCeeecccCcccchhhhhhh--------c-------CC-cEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhH
Confidence 46899999999999987763 1 12 379999998655444433321 1 122355543222222
Q ss_pred cc-CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEeccc
Q 037735 119 SL-FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFSV 196 (329)
Q Consensus 119 ~l-fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g~ 196 (329)
++ ....++|+|++. +|.. ..+... .....++..+++....+-|+|||+|++++...
T Consensus 210 ~~~~~~~~fD~Vi~D--------pP~~---------~~~~~~-----~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~ 266 (324)
T d2as0a2 210 KLQKKGEKFDIVVLD--------PPAF---------VQHEKD-----LKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 266 (324)
T ss_dssp HHHHTTCCEEEEEEC--------CCCS---------CSSGGG-----HHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred HHHhccCCCCchhcC--------Cccc---------cCCHHH-----HHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 33 245789999863 5533 111111 12234566788999999999999999998554
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.04 E-value=0.00028 Score=59.93 Aligned_cols=143 Identities=17% Similarity=0.184 Sum_probs=84.2
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCC--cceeeecccccccc-
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQS--RSYYAAGVPGSFYS- 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~--~~~f~~gvpgsFy~- 118 (329)
+..+|+|.+||+|..|..+++ + .|...|+.-|.-..+....-+.+... +..++.+ +|-+
T Consensus 23 ~~~~~lD~t~G~Gghs~~il~--------~-------~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~---~f~~~ 84 (192)
T d1m6ya2 23 DEKIILDCTVGEGGHSRAILE--------H-------CPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKV---SYREA 84 (192)
T ss_dssp TTCEEEETTCTTSHHHHHHHH--------H-------CTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEEC---CGGGH
T ss_pred CCCEEEEecCCCcHHHHHHHh--------c-------CCCCeEEEeechHHHHHHHHHhhccccccccchhH---HHhhH
Confidence 457899999999999999986 3 24468999999877766655544321 2233433 3421
Q ss_pred ----ccCCCCceeE-----EEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceE
Q 037735 119 ----SLFPKSSLHF-----VHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLA 189 (329)
Q Consensus 119 ----~lfp~~s~dl-----~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l 189 (329)
.-++.+++|. ++|++-+-+.++ --.....+|..+.+-|+|||.|
T Consensus 85 ~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r---------------------------~~~~~~~~L~~a~~~Lk~gG~l 137 (192)
T d1m6ya2 85 DFLLKTLGIEKVDGILMDLGVSTYQLKGENR---------------------------ELENLKEFLKKAEDLLNPGGRI 137 (192)
T ss_dssp HHHHHHTTCSCEEEEEEECSCCHHHHHTSHT---------------------------HHHHHHHHHHHGGGGEEEEEEE
T ss_pred HHHHHHcCCCCcceeeeccchhHhhhhhhhc---------------------------cchhHHHHHHHHHHhcCCCCee
Confidence 1133455554 455543322111 1123457799999999999999
Q ss_pred EEEecccCCCCcccCCcccchHHHHHHHHHHHHhcCCcCCCcccCCCHHHHHH
Q 037735 190 ALVMFSVPDGIPLVNNAAGSFYNTFGSCLVELTKMGILSKEKMYNPTPKELEG 242 (329)
Q Consensus 190 ~~~~~g~~~~~~~~~~~~~~~~~~l~~a~~~l~~eG~i~~~~~y~ps~eE~~~ 242 (329)
++.++-..+. ..++..+++...--++. ++...||.+|++.
T Consensus 138 ~ii~f~s~Ed------------r~vk~~f~~~~~~~~i~-~k~I~ps~~Ei~~ 177 (192)
T d1m6ya2 138 VVISFHSLED------------RIVKETFRNSKKLRILT-EKPVRPSEEEIRE 177 (192)
T ss_dssp EEEESSHHHH------------HHHHHHHHHCSSEEESC-SSCBCCCHHHHHH
T ss_pred eeeccccHHH------------HHHHHHHhhccccccCC-CCCcCcCHHHHHh
Confidence 9988653221 13333344332212122 1255688888765
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.01 E-value=0.0024 Score=57.59 Aligned_cols=123 Identities=15% Similarity=0.110 Sum_probs=70.4
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC--CCCcceeeecccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL--PQSRSYYAAGVPGSFYS 118 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l--~~~~~~f~~gvpgsFy~ 118 (329)
.+..+|+|.+||+|.....++..+ .++ ..+..+++..|+-..........+ ......+..+ ++.
T Consensus 116 ~~~~~vlDp~~GsG~~l~~~~~~l----~~~------~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~---d~~- 181 (328)
T d2f8la1 116 KKNVSILDPACGTANLLTTVINQL----ELK------GDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQ---DGL- 181 (328)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHH----HTT------SSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEES---CTT-
T ss_pred CCCCEEEeCCCCcchhHHHHHHHH----Hhc------cCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcc---ccc-
Confidence 456899999999998877776543 111 144578999998655444322111 1111222222 232
Q ss_pred ccCCCCceeEEEec--cceecccCCCCC-C--CCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 119 SLFPKSSLHFVHSS--YTLHWLSKVPKV-D--GVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss--~alhWLs~~p~~-~--~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
...|...+|+|+++ +..+|-...... . ...+. .. -...|+....+-|+|||++++.+
T Consensus 182 ~~~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~-----~~-------------~~~~Fi~~~~~~Lk~~G~~~~I~ 243 (328)
T d2f8la1 182 ANLLVDPVDVVISDLPVGYYPDDENAKTFELCREEGH-----SF-------------AHFLFIEQGMRYTKPGGYLFFLV 243 (328)
T ss_dssp SCCCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSC-----EE-------------HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccccccccccCCCCCCCccchhhhhcchhcccCc-----ch-------------HHHHHHHHHHHhcCCCCceEEEe
Confidence 33567789999998 323332111000 0 00100 00 12368999999999999999988
Q ss_pred cc
Q 037735 194 FS 195 (329)
Q Consensus 194 ~g 195 (329)
+.
T Consensus 244 p~ 245 (328)
T d2f8la1 244 PD 245 (328)
T ss_dssp EG
T ss_pred cC
Confidence 64
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.90 E-value=0.0023 Score=53.67 Aligned_cols=120 Identities=18% Similarity=0.253 Sum_probs=65.7
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeecccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~l 120 (329)
.+..+|+|.|||+|.+...+.+ +.. ....++..|+-.... .+.. ..-... +++. ..
T Consensus 18 ~~~~~IlDp~~G~G~fl~~~~~--------~~~------~~~~i~g~ei~~~~~-----~~~~-~~~~~~---~~~~-~~ 73 (223)
T d2ih2a1 18 PRGGRVLEPACAHGPFLRAFRE--------AHG------TAYRFVGVEIDPKAL-----DLPP-WAEGIL---ADFL-LW 73 (223)
T ss_dssp CTTCEEEEETCTTCHHHHHHHH--------HHC------SCSEEEEEESCTTTC-----CCCT-TEEEEE---SCGG-GC
T ss_pred CCcCEEEECCCchHHHHHHHHH--------hcc------ccceEEeeecCHHHH-----hhcc-cceeee---eehh-cc
Confidence 4457999999999987655543 211 124688888743221 1111 122233 2443 33
Q ss_pred CCCCceeEEEeccce---ecccCCCCCCCCccceeecCCcHHHHHHHHHH-----Hhhc-HHHHHHHHHHHhccCceEEE
Q 037735 121 FPKSSLHFVHSSYTL---HWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQ-----FNND-FQTFLNTRAQELVPGGLAAL 191 (329)
Q Consensus 121 fp~~s~dl~~Ss~al---hWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q-----~~~D-~~~FL~~ra~eL~pGG~l~~ 191 (329)
.+...+|+++++--. ++.+..+.. ..+.....+... ...| ...|+..-.+-|+|||++++
T Consensus 74 ~~~~~fd~ii~npP~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~ 142 (223)
T d2ih2a1 74 EPGEAFDLILGNPPYGIVGEASKYPIH-----------VFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVF 142 (223)
T ss_dssp CCSSCEEEEEECCCCCCBSCTTTCSBC-----------CCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccceecccCccccccccccccch-----------hhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEE
Confidence 456789999988543 222222211 111111222211 1122 35688888899999999999
Q ss_pred Eecc
Q 037735 192 VMFS 195 (329)
Q Consensus 192 ~~~g 195 (329)
.++.
T Consensus 143 I~p~ 146 (223)
T d2ih2a1 143 VVPA 146 (223)
T ss_dssp EEEG
T ss_pred EEee
Confidence 9853
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.31 E-value=0.0053 Score=53.68 Aligned_cols=77 Identities=14% Similarity=0.045 Sum_probs=50.8
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---Cccee-e-eccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---SRSYY-A-AGVPGS 115 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~~~~f-~-~gvpgs 115 (329)
.+..+|+|+|||+|.-+..+.... |..+++..|....-++..-+++.. ...+. . ...+..
T Consensus 60 ~~~~~~LDiGtGsg~I~~~l~~~~---------------~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~ 124 (250)
T d2h00a1 60 STLRRGIDIGTGASCIYPLLGATL---------------NGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTL 124 (250)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHH---------------HCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCS
T ss_pred cccceEEEeCCCchHHHHHHHHhC---------------CCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHh
Confidence 456899999999999999987622 347899999987766665444321 11222 1 223344
Q ss_pred cccccC--CCCceeEEEec
Q 037735 116 FYSSLF--PKSSLHFVHSS 132 (329)
Q Consensus 116 Fy~~lf--p~~s~dl~~Ss 132 (329)
++.-++ ..+++|+++|+
T Consensus 125 ~~~~~~~~~~~~fD~ivsN 143 (250)
T d2h00a1 125 LMDALKEESEIIYDFCMCN 143 (250)
T ss_dssp STTTSTTCCSCCBSEEEEC
T ss_pred hhhhhhhcccCceeEEEec
Confidence 444443 45689999997
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.27 E-value=0.013 Score=52.93 Aligned_cols=118 Identities=15% Similarity=0.164 Sum_probs=73.1
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC-----CCCcceeeeccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL-----PQSRSYYAAGVPGS 115 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l-----~~~~~~f~~gvpgs 115 (329)
.+..+|||+.|+||..|+.++. . ..+|++.|....-....-+++ ...+--|+.+.--.
T Consensus 131 ~~~~rVLdlf~~tG~~sl~aa~--------~---------GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~ 193 (309)
T d2igta1 131 DRPLKVLNLFGYTGVASLVAAA--------A---------GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMK 193 (309)
T ss_dssp SSCCEEEEETCTTCHHHHHHHH--------T---------TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHH
T ss_pred cCCCeEEEecCCCcHHHHHHHh--------C---------CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHH
Confidence 4467999999999999998864 1 147999999876555544432 22223466665444
Q ss_pred ccccc-CCCCceeEEEeccceecccCCCCC-CCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 116 FYSSL-FPKSSLHFVHSSYTLHWLSKVPKV-DGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 116 Fy~~l-fp~~s~dl~~Ss~alhWLs~~p~~-~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
|..+. ...+.+|+|+.- +|.- .-.++.++ ..+.|+...+....+-|+|||.+++.+
T Consensus 194 ~l~~~~~~~~~fD~IilD--------PP~f~~~~~~~~~--------------~~~~~~~~l~~~~~~ll~~~g~~ll~t 251 (309)
T d2igta1 194 FIQREERRGSTYDIILTD--------PPKFGRGTHGEVW--------------QLFDHLPLMLDICREILSPKALGLVLT 251 (309)
T ss_dssp HHHHHHHHTCCBSEEEEC--------CCSEEECTTCCEE--------------EHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred hHHHHhhcCCCCCEEEEC--------CCcccccccchhH--------------HHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 54444 345788998862 4422 11111111 123345567778888899999988777
Q ss_pred cccC
Q 037735 194 FSVP 197 (329)
Q Consensus 194 ~g~~ 197 (329)
....
T Consensus 252 ~~s~ 255 (309)
T d2igta1 252 AYSI 255 (309)
T ss_dssp ECCT
T ss_pred cCCC
Confidence 6543
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.26 E-value=0.00084 Score=57.65 Aligned_cols=77 Identities=9% Similarity=0.104 Sum_probs=44.7
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CC-Ccceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQ-SRSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~-~~~~f~~gvpgsFy 117 (329)
+|.+|+|+||++|..|+.+...+ .+..+++.-|.........-+.+ +- .+--+..|...+..
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al--------------~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l 121 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLL--------------QPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLI 121 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTC--------------CTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHG
T ss_pred CCCEEEEEccCchhHHHHHHHhC--------------CCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccc
Confidence 56799999999999998886422 22358898898754333222112 11 11234444322222
Q ss_pred ccc---CCCCceeEEEec
Q 037735 118 SSL---FPKSSLHFVHSS 132 (329)
Q Consensus 118 ~~l---fp~~s~dl~~Ss 132 (329)
.++ +..+++|+++--
T Consensus 122 ~~l~~~~~~~~~D~ifiD 139 (214)
T d2cl5a1 122 PQLKKKYDVDTLDMVFLD 139 (214)
T ss_dssp GGHHHHSCCCCEEEEEEC
T ss_pred cchhhcccccccceeeec
Confidence 333 345678988864
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.20 E-value=0.0019 Score=52.06 Aligned_cols=71 Identities=11% Similarity=0.078 Sum_probs=44.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC---C-cceeeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ---S-RSYYAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~---~-~~~f~~gvpgsFy 117 (329)
+--+|+|+|||||..++..++ + .+ -+|++.|.-.+....+-+++.. . +.-++.+ +..
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~--------r-------ga-~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~---D~~ 74 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVS--------R-------GM-SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKM---EAE 74 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHH--------T-------TC-CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECS---CHH
T ss_pred CCCeEEEcCCccCHHHHHHHH--------h-------Cc-ceeeeehhchhhhhhhhhhhhhcccccchhhhcc---ccc
Confidence 346899999999998887654 2 22 3899999987666665444321 1 1223333 333
Q ss_pred ccc-CCCCceeEEEe
Q 037735 118 SSL-FPKSSLHFVHS 131 (329)
Q Consensus 118 ~~l-fp~~s~dl~~S 131 (329)
..+ .+.+++|+++.
T Consensus 75 ~~l~~~~~~fDiIf~ 89 (152)
T d2esra1 75 RAIDCLTGRFDLVFL 89 (152)
T ss_dssp HHHHHBCSCEEEEEE
T ss_pred ccccccccccceeEe
Confidence 333 46677888853
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.19 E-value=0.0037 Score=53.03 Aligned_cols=67 Identities=9% Similarity=-0.057 Sum_probs=42.7
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccccccC
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFYSSLF 121 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy~~lf 121 (329)
.--+|+|+|||||..++.+.. . .+ -+|+..|.-...-...-++++. .-|+.+ ++. +
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~--------~-------ga-~~V~~vDid~~a~~~ar~N~~~--~~~~~~---D~~-~-- 103 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYL--------L-------GA-ESVTAFDIDPDAIETAKRNCGG--VNFMVA---DVS-E-- 103 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHH--------T-------TB-SEEEEEESCHHHHHHHHHHCTT--SEEEEC---CGG-G--
T ss_pred CCCEEEEeCCCCcHHHHHHHH--------c-------CC-CcccccccCHHHHHHHHHcccc--ccEEEE---ehh-h--
Confidence 346899999999988876543 1 22 3799999865554444555442 234443 342 2
Q ss_pred CCCceeEEEec
Q 037735 122 PKSSLHFVHSS 132 (329)
Q Consensus 122 p~~s~dl~~Ss 132 (329)
.++.+|+|+++
T Consensus 104 l~~~fD~Vi~N 114 (197)
T d1ne2a_ 104 ISGKYDTWIMN 114 (197)
T ss_dssp CCCCEEEEEEC
T ss_pred cCCcceEEEeC
Confidence 35789999875
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=96.07 E-value=0.0026 Score=57.72 Aligned_cols=115 Identities=8% Similarity=0.006 Sum_probs=70.4
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhc-----CCCCcceeeeccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKS-----LPQSRSYYAAGVPGSFY 117 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~-----l~~~~~~f~~gvpgsFy 117 (329)
..+|||+.|+||..|+.+.. . .. ..|+..|+...-....-.+ +...+.-|+.+.--++.
T Consensus 145 g~~VLdlf~~~G~~sl~aa~--------~-------ga-~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l 208 (317)
T d2b78a2 145 GKTVLNLFSYTAAFSVAAAM--------G-------GA-MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYF 208 (317)
T ss_dssp TCEEEEETCTTTHHHHHHHH--------T-------TB-SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHH
T ss_pred CCceeecCCCCcHHHHHHHh--------C-------CC-ceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHH
Confidence 46899999999999987653 1 11 3688899876544443332 22223346666544444
Q ss_pred cccC-CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 118 SSLF-PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 118 ~~lf-p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
+++- -...+|+|+.- +|.-.-++. . .....+|+...++.-.+-|+|||+|++++..
T Consensus 209 ~~~~~~~~~fD~Ii~D--------PP~f~~~~~------~--------~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs 265 (317)
T d2b78a2 209 KYARRHHLTYDIIIID--------PPSFARNKK------E--------VFSVSKDYHKLIRQGLEILSENGLIIASTNA 265 (317)
T ss_dssp HHHHHTTCCEEEEEEC--------CCCC-----------C--------CCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred HHHHhhcCCCCEEEEc--------Chhhccchh------H--------HHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 4443 34579998863 442210110 0 0123456677888899999999999998854
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.06 E-value=0.0039 Score=52.65 Aligned_cols=70 Identities=17% Similarity=0.132 Sum_probs=44.7
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--Ccceeeecccccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--SRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--~~~~f~~gvpgsFy~~l 120 (329)
..+|+|+|||||..++.++. + .+ ..|+..|.-......+-+++.. ...-+..+. . .
T Consensus 47 g~~vLDlg~GtG~l~i~a~~--------~-------g~-~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d---~---~ 104 (201)
T d1wy7a1 47 GKVVADLGAGTGVLSYGALL--------L-------GA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGD---V---S 104 (201)
T ss_dssp TCEEEEETCTTCHHHHHHHH--------T-------TC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESC---G---G
T ss_pred CCEEEECcCcchHHHHHHHH--------c-------CC-CEEEEEcCcHHHHHHHHHHHHHcCCCceEEECc---h---h
Confidence 46899999999998877653 1 12 4799999987666665555432 122344432 2 1
Q ss_pred CCCCceeEEEeccc
Q 037735 121 FPKSSLHFVHSSYT 134 (329)
Q Consensus 121 fp~~s~dl~~Ss~a 134 (329)
-+++.+|+|+++=-
T Consensus 105 ~~~~~fD~Vi~nPP 118 (201)
T d1wy7a1 105 EFNSRVDIVIMNPP 118 (201)
T ss_dssp GCCCCCSEEEECCC
T ss_pred hhCCcCcEEEEcCc
Confidence 13567999986533
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=95.51 E-value=0.0067 Score=52.39 Aligned_cols=106 Identities=11% Similarity=0.135 Sum_probs=64.4
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhh---hhcCCC-Ccceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTL---FKSLPQ-SRSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~l---f~~l~~-~~~~f~~gvpgsF 116 (329)
.++.+|+|+|+++|.-|+.+...+ ++..+++.-|...+..... |+..+- .+--+..|...+.
T Consensus 58 ~~~k~iLEiGT~~GyStl~la~al--------------~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~ 123 (227)
T d1susa1 58 INAKNTMEIGVYTGYSLLATALAI--------------PEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPV 123 (227)
T ss_dssp HTCCEEEEECCGGGHHHHHHHHHS--------------CTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHH
T ss_pred cCCCcEEEecchhhhhHHHHHhhC--------------CCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHH
Confidence 357899999999999999988643 2235788888765433332 322221 1233555555555
Q ss_pred ccccCC----CCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEE
Q 037735 117 YSSLFP----KSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALV 192 (329)
Q Consensus 117 y~~lfp----~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~ 192 (329)
..++.. .+++||+|-=. |=+ ....++...-+-|+|||++++=
T Consensus 124 L~~l~~~~~~~~~fD~iFiDa---~k~-------------------------------~y~~~~e~~~~ll~~gGiii~D 169 (227)
T d1susa1 124 LDEMIKDEKNHGSYDFIFVDA---DKD-------------------------------NYLNYHKRLIDLVKVGGVIGYD 169 (227)
T ss_dssp HHHHHHCGGGTTCBSEEEECS---CST-------------------------------THHHHHHHHHHHBCTTCCEEEE
T ss_pred HHHHHhccccCCceeEEEecc---chh-------------------------------hhHHHHHHHHhhcCCCcEEEEc
Confidence 555533 35789888531 201 1124455556789999999986
Q ss_pred ec
Q 037735 193 MF 194 (329)
Q Consensus 193 ~~ 194 (329)
-.
T Consensus 170 Nv 171 (227)
T d1susa1 170 NT 171 (227)
T ss_dssp TT
T ss_pred cC
Confidence 43
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.43 E-value=0.004 Score=53.53 Aligned_cols=105 Identities=11% Similarity=0.096 Sum_probs=60.9
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhh---hhcCCCC-cceeeecccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTL---FKSLPQS-RSYYAAGVPGSF 116 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~l---f~~l~~~-~~~f~~gvpgsF 116 (329)
.++-+|+|+||++|.-|+.+...+ ++.-+++.-|...+-.... |+...-. +--+..|.....
T Consensus 58 ~~~k~vLEiGt~~GyStl~~a~al--------------~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~ 123 (219)
T d2avda1 58 IQAKKALDLGTFTGYSALALALAL--------------PADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALET 123 (219)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTS--------------CTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHH
T ss_pred cCCCeEEEEechhhHHHHHHHHhC--------------CCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhc
Confidence 457899999999999988887522 2235788888765433322 3222211 122344432233
Q ss_pred ccccC---CCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 117 YSSLF---PKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 117 y~~lf---p~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
..+++ .++++||+|-- || . . ....++...-+-|+|||.+++--
T Consensus 124 l~~~~~~~~~~~fD~ifiD---~d----k-~--------------------------~y~~~~~~~~~lL~~GGvii~Dn 169 (219)
T d2avda1 124 LDELLAAGEAGTFDVAVVD---AD----K-E--------------------------NCSAYYERCLQLLRPGGILAVLR 169 (219)
T ss_dssp HHHHHHTTCTTCEEEEEEC---SC----S-T--------------------------THHHHHHHHHHHEEEEEEEEEEC
T ss_pred chhhhhhcccCCccEEEEe---CC----H-H--------------------------HHHHHHHHHHHHhcCCcEEEEeC
Confidence 33332 35679999863 11 1 0 11133445557899999999844
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=95.22 E-value=0.021 Score=49.72 Aligned_cols=79 Identities=15% Similarity=0.073 Sum_probs=53.5
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcce-eeeccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSY-YAAGVPGSFYSS 119 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~-f~~gvpgsFy~~ 119 (329)
.+.-+|+|+|||+|..|..+++ + . .+|+.-|+-.+....+-+..+...++ ++. +++..-
T Consensus 28 ~~~d~VLEIGpG~G~LT~~L~~--------~--------~-~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~---~D~l~~ 87 (245)
T d1yuba_ 28 KETDTVYEIGTGKGHLTTKLAK--------I--------S-KQVTSIELDSHLFNLSSEKLKLNTRVTLIH---QDILQF 87 (245)
T ss_dssp CSSEEEEECSCCCSSCSHHHHH--------H--------S-SEEEESSSSCSSSSSSSCTTTTCSEEEECC---SCCTTT
T ss_pred CCCCeEEEECCCccHHHHHHHh--------h--------c-CceeEeeecccchhhhhhhhhhccchhhhh---hhhhcc
Confidence 3567899999999999999985 2 1 36888888766555544444332232 344 467555
Q ss_pred cCCCCceeEEEeccceeccc
Q 037735 120 LFPKSSLHFVHSSYTLHWLS 139 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs 139 (329)
=+|....+.++|+.-.|+-+
T Consensus 88 ~~~~~~~~~vv~NLPY~Ist 107 (245)
T d1yuba_ 88 QFPNKQRYKIVGNIPYHLST 107 (245)
T ss_dssp TCCCSSEEEEEEECCSSSCH
T ss_pred ccccceeeeEeeeeehhhhH
Confidence 57777788888888777643
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=94.54 E-value=0.036 Score=49.84 Aligned_cols=115 Identities=13% Similarity=0.118 Sum_probs=69.6
Q ss_pred CCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC--------CCCcceeeec
Q 037735 40 VPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL--------PQSRSYYAAG 111 (329)
Q Consensus 40 ~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l--------~~~~~~f~~g 111 (329)
.+++.+||.+|.|.|.....+++ + .|..+|...|+-..-.+..-+.+ ...+--.+.+
T Consensus 75 ~~~pk~VLiiG~G~G~~~~~ll~---------~------~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~ 139 (312)
T d1uira_ 75 HPEPKRVLIVGGGEGATLREVLK---------H------PTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVID 139 (312)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTT---------S------TTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEES
T ss_pred CCCcceEEEeCCCchHHHHHHHh---------c------CCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEc
Confidence 36788999999999987777653 1 23347777777654433222222 1122234555
Q ss_pred cccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEE
Q 037735 112 VPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAAL 191 (329)
Q Consensus 112 vpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~ 191 (329)
.+..|-.+ .++.+|+|++-.+=.|....|.. . .|. ..|++..++-|+|||++++
T Consensus 140 Da~~~l~~--~~~~yDvIi~D~~dp~~~~~~~~-----~------------L~t-------~eF~~~~~~~L~p~Gvlv~ 193 (312)
T d1uira_ 140 DARAYLER--TEERYDVVIIDLTDPVGEDNPAR-----L------------LYT-------VEFYRLVKAHLNPGGVMGM 193 (312)
T ss_dssp CHHHHHHH--CCCCEEEEEEECCCCBSTTCGGG-----G------------GSS-------HHHHHHHHHTEEEEEEEEE
T ss_pred hHHHHhhh--cCCcccEEEEeCCCcccccchhh-----h------------hhh-------HHHHHHHHHhcCCCceEEE
Confidence 54555433 45679999976543343332211 0 000 2789999999999999998
Q ss_pred Eecc
Q 037735 192 VMFS 195 (329)
Q Consensus 192 ~~~g 195 (329)
...+
T Consensus 194 ~~~s 197 (312)
T d1uira_ 194 QTGM 197 (312)
T ss_dssp EEEE
T ss_pred ecCC
Confidence 7644
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=94.42 E-value=0.038 Score=47.58 Aligned_cols=64 Identities=19% Similarity=0.125 Sum_probs=37.8
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcce-eeeccccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSY-YAAGVPGSFYSS 119 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~-f~~gvpgsFy~~ 119 (329)
.+.-+|+|+|||+|..|..+++.. .+|+.-+.-.+....+-+......++ ++. |+|..-
T Consensus 20 ~~~d~VlEIGpG~G~LT~~Ll~~~-----------------~~v~avE~D~~l~~~l~~~~~~~~n~~i~~---~D~l~~ 79 (235)
T d1qama_ 20 NEHDNIFEIGSGKGHFTLELVQRC-----------------NFVTAIEIDHKLCKTTENKLVDHDNFQVLN---KDILQF 79 (235)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHS-----------------SEEEEECSCHHHHHHHHHHTTTCCSEEEEC---CCGGGC
T ss_pred CCCCeEEEECCCchHHHHHHHhCc-----------------CceEEEeeccchHHHHHHHhhcccchhhhh---hhhhhc
Confidence 456789999999999999998521 25777777544434443333332232 333 456544
Q ss_pred cCCCC
Q 037735 120 LFPKS 124 (329)
Q Consensus 120 lfp~~ 124 (329)
-+|+.
T Consensus 80 ~~~~~ 84 (235)
T d1qama_ 80 KFPKN 84 (235)
T ss_dssp CCCSS
T ss_pred ccccc
Confidence 34433
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=94.30 E-value=0.38 Score=39.25 Aligned_cols=113 Identities=17% Similarity=0.111 Sum_probs=62.8
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCCCcceeeeccccccc---
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQSRSYYAAGVPGSFY--- 117 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~~~~~f~~gvpgsFy--- 117 (329)
.+..+|+|||||.|..|..+.+.+ .+.-.++..|+-.-+ .++ ...|+.|.-.+-.
T Consensus 21 k~~~~vlDLg~aPGgw~q~~~~~~--------------~~~~~v~~vDl~~~~------~i~--~~~~~~~d~~~~~~~~ 78 (180)
T d1ej0a_ 21 KPGMTVVDLGAAPGGWSQYVVTQI--------------GGKGRIIACDLLPMD------PIV--GVDFLQGDFRDELVMK 78 (180)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHHH--------------CTTCEEEEEESSCCC------CCT--TEEEEESCTTSHHHHH
T ss_pred CCCCeEEEEeccCCcceEEEEeec--------------cccceEEEeeccccc------ccC--CceEeecccccchhhh
Confidence 345789999999999988776533 122367777764211 111 1233333222111
Q ss_pred --cccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 118 --SSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 118 --~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
......+.+|+|.|=.+.. . +....+.+.-.- +=...-|...-+.|++||.|++=+|-
T Consensus 79 ~~~~~~~~~~~DlVlSD~ap~-------~----------sg~~~~d~~~~~---~L~~~~l~~a~~~Lk~gG~fV~K~F~ 138 (180)
T d1ej0a_ 79 ALLERVGDSKVQVVMSDMAPN-------M----------SGTPAVDIPRAM---YLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp HHHHHHTTCCEEEEEECCCCC-------C----------CSCHHHHHHHHH---HHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred hhhhhccCcceeEEEecccch-------h----------cccchhHHHHHH---HHHHHHHHhhhhccCCCCcEEEEEec
Confidence 2334667799999876521 1 112222211111 11223466667889999999999984
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=94.13 E-value=0.028 Score=49.67 Aligned_cols=73 Identities=19% Similarity=0.261 Sum_probs=47.4
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcceeeecccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSYYAAGVPGSFYS 118 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~f~~gvpgsFy~ 118 (329)
+..+|+|+|||+|.-+..+.. .|..+|++.|....-.+..-++.. ....+++. .+++++
T Consensus 110 ~~~~vld~g~GsG~i~~~la~----------------~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~--~~~~~~ 171 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVAK----------------FSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVR--KGEFLE 171 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHHH----------------HSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEE--ESSTTG
T ss_pred cccEEEEeeeeeehhhhhhhh----------------cccceeeechhhhhHHHHHHHHHHHcCCCceeEEe--eccccc
Confidence 356899999999997776642 245789999998766665554431 11233332 235655
Q ss_pred ccC-CCCceeEEEec
Q 037735 119 SLF-PKSSLHFVHSS 132 (329)
Q Consensus 119 ~lf-p~~s~dl~~Ss 132 (329)
-+. ..+.+|+++|+
T Consensus 172 ~~~~~~~~fDlIVsN 186 (271)
T d1nv8a_ 172 PFKEKFASIEMILSN 186 (271)
T ss_dssp GGGGGTTTCCEEEEC
T ss_pred ccccccCcccEEEEc
Confidence 442 23689999998
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=93.56 E-value=0.051 Score=47.35 Aligned_cols=52 Identities=10% Similarity=0.105 Sum_probs=33.0
Q ss_pred CceEEEeeeCCCCcccHHHH------------HHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhh
Q 037735 42 NTFRIADFGCSTGPNTFIAV------------QNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTL 97 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~------------~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~l 97 (329)
+.-.|+|+|||+|..|..++ ..+++.+++++.. .+.+.++..|.-.-|+..+
T Consensus 21 ~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~----~~~~~ii~~D~l~~~~~~~ 84 (252)
T d1qyra_ 21 KGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFL----GPKLTIYQQDAMTFNFGEL 84 (252)
T ss_dssp TTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTT----GGGEEEECSCGGGCCHHHH
T ss_pred CCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhh----ccchhHHhhhhhhhccccc
Confidence 45678999999999999998 3444444443321 2346666666654454443
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=93.24 E-value=0.055 Score=44.45 Aligned_cols=42 Identities=14% Similarity=0.061 Sum_probs=32.0
Q ss_pred eEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC
Q 037735 44 FRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL 101 (329)
Q Consensus 44 ~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l 101 (329)
.+|||++||||..++..++ + -. -+|++.|.-..-...+-+++
T Consensus 45 ~~vLDlfaGsG~~gieals--------r-------Ga-~~v~~VE~~~~a~~~~k~N~ 86 (183)
T d2fpoa1 45 AQCLDCFAGSGALGLEALS--------R-------YA-AGATLIEMDRAVSQQLIKNL 86 (183)
T ss_dssp CEEEETTCTTCHHHHHHHH--------T-------TC-SEEEEECSCHHHHHHHHHHH
T ss_pred hhhhhhhccccceeeeEEe--------c-------Cc-ceeEEEEEeechhhHHHHHH
Confidence 5899999999999998876 2 22 27999999876666665543
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=92.59 E-value=0.093 Score=43.05 Aligned_cols=73 Identities=8% Similarity=0.094 Sum_probs=44.9
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC---CCCcce-eeeccccccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL---PQSRSY-YAAGVPGSFY 117 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l---~~~~~~-f~~gvpgsFy 117 (329)
+..+|+|+.||||..++..++ + -. -.|++.|.-..-++.+-+++ ....++ +..+.--.+.
T Consensus 41 ~~~~vLDlfaGsG~~g~ea~s--------r-------Ga-~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l 104 (182)
T d2fhpa1 41 DGGMALDLYSGSGGLAIEAVS--------R-------GM-DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRAL 104 (182)
T ss_dssp SSCEEEETTCTTCHHHHHHHH--------T-------TC-SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHH
T ss_pred CCCEEEEcccccccccceeee--------c-------ch-hHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhh
Confidence 347899999999999998876 2 12 26889998766666655443 221122 3333322333
Q ss_pred cccC-CCCceeEEE
Q 037735 118 SSLF-PKSSLHFVH 130 (329)
Q Consensus 118 ~~lf-p~~s~dl~~ 130 (329)
+++. ....+|+|+
T Consensus 105 ~~~~~~~~~fDlIf 118 (182)
T d2fhpa1 105 EQFYEEKLQFDLVL 118 (182)
T ss_dssp HHHHHTTCCEEEEE
T ss_pred hhhcccCCCcceEE
Confidence 4442 445788886
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=92.47 E-value=0.17 Score=45.06 Aligned_cols=124 Identities=15% Similarity=0.099 Sum_probs=72.3
Q ss_pred ceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CCcceeeeccccccccc
Q 037735 43 TFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QSRSYYAAGVPGSFYSS 119 (329)
Q Consensus 43 ~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~~~~f~~gvpgsFy~~ 119 (329)
-.+|+|+-||.|.=|..+.+.. .....++.+|...+-...+-+++. ......... ++...
T Consensus 117 g~~vlD~CAapGgKt~~l~~~~--------------~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~---d~~~~ 179 (313)
T d1ixka_ 117 GEIVADMAAAPGGKTSYLAQLM--------------RNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHS---SSLHI 179 (313)
T ss_dssp TCEEEECCSSCSHHHHHHHHHT--------------TTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESS---CGGGG
T ss_pred cceeeecccchhhhhHhhhhhc--------------ccccceeeeccCHHHHHHHHHHHHHHHhhccccccc---ccccc
Confidence 4689999999999888886522 233689999998766655544332 211122222 22111
Q ss_pred cCCCCceeEEEeccceecccCCCCC-C--CCccc-eeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEecc
Q 037735 120 LFPKSSLHFVHSSYTLHWLSKVPKV-D--GVEGS-IQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMFS 195 (329)
Q Consensus 120 lfp~~s~dl~~Ss~alhWLs~~p~~-~--~n~g~-i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~g 195 (329)
-..+..+|.| |-++||+ . +.+.. +.....+..+.+.=..| .++|..-++-|+|||.||-+|..
T Consensus 180 ~~~~~~fD~I--------LvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q-----~~iL~~a~~~lk~gG~lVYsTCS 246 (313)
T d1ixka_ 180 GELNVEFDKI--------LLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQ-----MRLLEKGLEVLKPGGILVYSTCS 246 (313)
T ss_dssp GGGCCCEEEE--------EEECCTTSTTTCC--------CCHHHHHHHHHHH-----HHHHHHHHHHEEEEEEEEEEESC
T ss_pred ccccccccEE--------EEccccccCCceeeccchhhhhhhhHHHHHHHHH-----HHHHHhhhheeCCCcEEEEeecc
Confidence 1234567766 4567877 2 32211 22222333333333333 37899999999999999999976
Q ss_pred c
Q 037735 196 V 196 (329)
Q Consensus 196 ~ 196 (329)
-
T Consensus 247 l 247 (313)
T d1ixka_ 247 L 247 (313)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.43 E-value=0.22 Score=43.45 Aligned_cols=109 Identities=13% Similarity=0.119 Sum_probs=62.4
Q ss_pred CCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhc-CC-------------CCc
Q 037735 40 VPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKS-LP-------------QSR 105 (329)
Q Consensus 40 ~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~-l~-------------~~~ 105 (329)
.+++.+||-+|+|.|.....+++ + .+ .+|...|+-..-.. +.+. ++ ..+
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~---------~------~~-~~v~~VEiD~~Vi~-~a~~~f~~~~~~~~~~~~~~d~r 132 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQ---------H------DV-DEVIMVEIDEDVIM-VSKDLIKIDNGLLEAMLNGKHEK 132 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTT---------S------CC-SEEEEEESCHHHHH-HHHHHTCTTTTHHHHHHTTCCSS
T ss_pred CCCCceEEEecCCchHHHHHHHH---------h------CC-ceEEEecCCHHHHH-HHHHhhhhccchhhhhhccCCCC
Confidence 36789999999999987766652 1 22 35666676533222 2111 11 112
Q ss_pred ceeeeccccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhcc
Q 037735 106 SYYAAGVPGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVP 185 (329)
Q Consensus 106 ~~f~~gvpgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~p 185 (329)
--.+.+.+..|-.+ ++.+|+|+.=..-.+ + .| ...|. ..|++..++-|+|
T Consensus 133 v~i~~~Da~~~l~~---~~~yDvIi~D~~~~~-~-~~------------------~~L~t-------~eF~~~~~~~L~~ 182 (276)
T d1mjfa_ 133 AKLTIGDGFEFIKN---NRGFDVIIADSTDPV-G-PA------------------KVLFS-------EEFYRYVYDALNN 182 (276)
T ss_dssp EEEEESCHHHHHHH---CCCEEEEEEECCCCC-------------------------TTS-------HHHHHHHHHHEEE
T ss_pred ceEEEChHHHHHhc---cCCCCEEEEeCCCCC-C-Cc------------------ccccC-------HHHHHhhHhhcCC
Confidence 23445554444333 567999986433222 1 11 01111 2789999999999
Q ss_pred CceEEEEecc
Q 037735 186 GGLAALVMFS 195 (329)
Q Consensus 186 GG~l~~~~~g 195 (329)
||++++..-.
T Consensus 183 ~Gv~v~q~~s 192 (276)
T d1mjfa_ 183 PGIYVTQAGS 192 (276)
T ss_dssp EEEEEEEEEE
T ss_pred CceEEEecCC
Confidence 9999988633
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.83 E-value=0.28 Score=42.93 Aligned_cols=128 Identities=20% Similarity=0.188 Sum_probs=77.2
Q ss_pred CCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCCC--Ccceeeecccccccc
Q 037735 41 PNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLPQ--SRSYYAAGVPGSFYS 118 (329)
Q Consensus 41 ~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~~--~~~~f~~gvpgsFy~ 118 (329)
....+|+|+-+|.|.=|..+.+ + .....|+.+|...+-...+-+.+.. ..++.+... +....
T Consensus 101 ~~g~~vLD~CAaPGgKt~~la~-l--------------~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~-~~~~~ 164 (284)
T d1sqga2 101 QNGEHILDLCAAPGGKTTHILE-V--------------APEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGD-GRYPS 164 (284)
T ss_dssp CTTCEEEEESCTTCHHHHHHHH-H--------------CTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECC-TTCTH
T ss_pred cccceeEeccCccccchhhhhh-h--------------hhhhhhhhhhcchhhhhhHhhhhhcccccceeeecc-ccccc
Confidence 3457899999999999998875 1 1125799999988777766554421 123333322 12223
Q ss_pred ccCCCCceeEEEeccceecccCCCCC-C--CCcc-ceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEec
Q 037735 119 SLFPKSSLHFVHSSYTLHWLSKVPKV-D--GVEG-SIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 119 ~lfp~~s~dl~~Ss~alhWLs~~p~~-~--~n~g-~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
...++..+|.|. =++||+ . +.+. .+....++..+.+.-.-| .++|.+-++-|+|||.||-+|.
T Consensus 165 ~~~~~~~fd~IL--------~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ-----~~iL~~a~~~lk~gG~lvYsTC 231 (284)
T d1sqga2 165 QWCGEQQFDRIL--------LDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQ-----SEILDAIWPHLKTGGTLVYATC 231 (284)
T ss_dssp HHHTTCCEEEEE--------EECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHH-----HHHHHHHGGGEEEEEEEEEEES
T ss_pred hhcccccccEEE--------EeccccccCccccccchhhccccchhhHHHHHH-----HHHHHHHHHhcCCCceEEEeee
Confidence 334556788774 357776 1 2111 122222333333333333 3778888899999999999997
Q ss_pred ccC
Q 037735 195 SVP 197 (329)
Q Consensus 195 g~~ 197 (329)
.-.
T Consensus 232 S~~ 234 (284)
T d1sqga2 232 SVL 234 (284)
T ss_dssp CCC
T ss_pred cCc
Confidence 643
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=90.42 E-value=0.19 Score=44.63 Aligned_cols=113 Identities=11% Similarity=0.045 Sum_probs=65.7
Q ss_pred CCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC-------CCCcceeeecc
Q 037735 40 VPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL-------PQSRSYYAAGV 112 (329)
Q Consensus 40 ~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l-------~~~~~~f~~gv 112 (329)
.++|.+||=+|.|.|.....+++ + .|..+|...|+-..-....-+-+ .+.+--.+.++
T Consensus 87 ~~~pk~VLiiGgG~G~~~r~~l~---------~------~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~D 151 (295)
T d1inla_ 87 HPNPKKVLIIGGGDGGTLREVLK---------H------DSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIAN 151 (295)
T ss_dssp SSSCCEEEEEECTTCHHHHHHTT---------S------TTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESC
T ss_pred CCCCceEEEecCCchHHHHHHHh---------c------CCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhh
Confidence 36789999999999987666652 1 23347888888654333322212 12233344555
Q ss_pred ccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEE
Q 037735 113 PGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALV 192 (329)
Q Consensus 113 pgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~ 192 (329)
+..|-.+ .++.+|+|+.-..-.|-. |.. ..|. ..|++..++-|+|||++++.
T Consensus 152 a~~~l~~--~~~~yDvIi~D~~dp~~~--~~~-----------------~L~t-------~efy~~~~~~L~~~Gi~v~q 203 (295)
T d1inla_ 152 GAEYVRK--FKNEFDVIIIDSTDPTAG--QGG-----------------HLFT-------EEFYQACYDALKEDGVFSAE 203 (295)
T ss_dssp HHHHGGG--CSSCEEEEEEEC-----------------------------CCS-------HHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHhc--CCCCCCEEEEcCCCCCcC--chh-----------------hhcc-------HHHHHHHHhhcCCCcEEEEe
Confidence 5555444 346788888654443321 100 0111 37899999999999999988
Q ss_pred ecc
Q 037735 193 MFS 195 (329)
Q Consensus 193 ~~g 195 (329)
..+
T Consensus 204 ~~s 206 (295)
T d1inla_ 204 TED 206 (295)
T ss_dssp CCC
T ss_pred cCC
Confidence 644
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=88.43 E-value=0.36 Score=44.38 Aligned_cols=130 Identities=15% Similarity=0.073 Sum_probs=67.1
Q ss_pred CceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcC--CCCccceEEecCCCcchHHh-----hhhcCCCCcceeeecccc
Q 037735 42 NTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHEC--PSAIEFQVFFNDHSDNDFNT-----LFKSLPQSRSYYAAGVPG 114 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~--~~~pe~~v~~nDLp~ndfn~-----lf~~l~~~~~~f~~gvpg 114 (329)
...+|+|-.||||.+...+++.+.+ ...... ....+..++..|.-.....- +...+.....-... +
T Consensus 162 ~~~~IlDPacGsG~fL~~a~~~~~~----~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~---~ 234 (425)
T d2okca1 162 MGETVCDPACGTGGFLLTAYDYMKG----QSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVC---E 234 (425)
T ss_dssp TTCCEEETTCTTCHHHHHHHHHHHT----CC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEE---C
T ss_pred ccceeeccccccCccHHHHHHHHHh----hccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeec---C
Confidence 4578999999999988887765421 100000 00012357777764322221 11111111111112 2
Q ss_pred ccccccCCCCceeEEEeccce--ecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEE
Q 037735 115 SFYSSLFPKSSLHFVHSSYTL--HWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALV 192 (329)
Q Consensus 115 sFy~~lfp~~s~dl~~Ss~al--hWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~ 192 (329)
++.. -.+...+|+|+++==+ .|-... +++....+...... -..|+....+-|+|||++++.
T Consensus 235 d~l~-~~~~~~fD~Ii~NPPfg~~~~~~~---~~~~~~~~~~~~~~-------------~~~Fi~~~~~~Lk~~G~~~iI 297 (425)
T d2okca1 235 DSLE-KEPSTLVDVILANPPFGTRPAGSV---DINRPDFYVETKNN-------------QLNFLQHMMLMLKTGGRAAVV 297 (425)
T ss_dssp CTTT-SCCSSCEEEEEECCCSSCCCTTCC---CCCCTTSSSCCSCH-------------HHHHHHHHHHHEEEEEEEEEE
T ss_pred chhh-hhcccccceEEecCCCCCCccccc---hhhhhhcccccccH-------------HHHHHHHHHHhcCCCCeEEEE
Confidence 3322 2466789999987322 221111 12322222222221 126899999999999999999
Q ss_pred ecc
Q 037735 193 MFS 195 (329)
Q Consensus 193 ~~g 195 (329)
++.
T Consensus 298 ~p~ 300 (425)
T d2okca1 298 LPD 300 (425)
T ss_dssp EEH
T ss_pred ech
Confidence 873
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=87.16 E-value=0.58 Score=38.20 Aligned_cols=23 Identities=35% Similarity=0.720 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhccCceEEEEec
Q 037735 172 FQTFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 172 ~~~FL~~ra~eL~pGG~l~~~~~ 194 (329)
+...|..+..-|+|||.+++.++
T Consensus 110 ~~~~L~~~~~~lk~gg~~~ii~f 132 (182)
T d1wg8a2 110 LKEFLEQAAEVLAPGGRLVVIAF 132 (182)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHHHHhhhCCCCeEEEEec
Confidence 45679999999999999999886
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=86.52 E-value=1 Score=36.36 Aligned_cols=72 Identities=18% Similarity=0.074 Sum_probs=44.7
Q ss_pred eEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcCC---CC-cce-eeecccccccc
Q 037735 44 FRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSLP---QS-RSY-YAAGVPGSFYS 118 (329)
Q Consensus 44 ~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l~---~~-~~~-f~~gvpgsFy~ 118 (329)
.++||+-||||..++..++ + -. -+|++.|.-..-++.+-+++. .. ..+ .....--++..
T Consensus 45 ~~vLDlFaGsG~~glEalS--------R-------GA-~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~ 108 (183)
T d2ifta1 45 SECLDGFAGSGSLGFEALS--------R-------QA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLK 108 (183)
T ss_dssp CEEEETTCTTCHHHHHHHH--------T-------TC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTT
T ss_pred ceEeecccCccceeeeeee--------e-------cc-eeeEEeecccchhhhHhhHHhhhccccccccccccccccccc
Confidence 5899999999999999986 3 22 379999988777777665532 11 111 22221112334
Q ss_pred ccCCCCceeEEEe
Q 037735 119 SLFPKSSLHFVHS 131 (329)
Q Consensus 119 ~lfp~~s~dl~~S 131 (329)
+......+|+||.
T Consensus 109 ~~~~~~~fDlIFl 121 (183)
T d2ifta1 109 QPQNQPHFDVVFL 121 (183)
T ss_dssp SCCSSCCEEEEEE
T ss_pred ccccCCcccEEEe
Confidence 4444556888874
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=86.11 E-value=2.6 Score=36.16 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=17.8
Q ss_pred CceEEEeeeCCCCcccHHHHH
Q 037735 42 NTFRIADFGCSTGPNTFIAVQ 62 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~ 62 (329)
+..+|+|||||.|.-|..++.
T Consensus 66 ~~~~vvDlG~~pGgws~~~a~ 86 (257)
T d2p41a1 66 PEGKVVDLGCGRGGWSYYCGG 86 (257)
T ss_dssp CCEEEEEETCTTSHHHHHHHT
T ss_pred CCCeEEEecCCCChHHHHHHh
Confidence 356899999999999988864
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=84.90 E-value=1.1 Score=38.91 Aligned_cols=111 Identities=12% Similarity=-0.010 Sum_probs=68.7
Q ss_pred CCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhh---hh----cCCCCcceeeecc
Q 037735 40 VPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTL---FK----SLPQSRSYYAAGV 112 (329)
Q Consensus 40 ~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~l---f~----~l~~~~~~f~~gv 112 (329)
.+++.+||-+|=|.|..+..+++ + .+..++...|+-..-.+.. |. .+.+.+--.+.++
T Consensus 73 ~~~p~~vLiiGgG~G~~~~~~l~---------~------~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D 137 (274)
T d1iy9a_ 73 HPNPEHVLVVGGGDGGVIREILK---------H------PSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDD 137 (274)
T ss_dssp SSSCCEEEEESCTTCHHHHHHTT---------C------TTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESC
T ss_pred cCCcceEEecCCCCcHHHHHHHh---------c------CCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEech
Confidence 35678999999999998877763 1 2234677777764433222 21 1222233345556
Q ss_pred ccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEE
Q 037735 113 PGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALV 192 (329)
Q Consensus 113 pgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~ 192 (329)
+..|-.+ .++.+|+|++-.+=.+- .|.. .+. ..|++...+-|+|||.++..
T Consensus 138 ~~~~l~~--~~~~yDvIi~D~~~p~~--~~~~------L~t-------------------~eFy~~~~~~L~~~Gv~v~q 188 (274)
T d1iy9a_ 138 GFMHIAK--SENQYDVIMVDSTEPVG--PAVN------LFT-------------------KGFYAGIAKALKEDGIFVAQ 188 (274)
T ss_dssp SHHHHHT--CCSCEEEEEESCSSCCS--CCCC------CST-------------------THHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHhh--cCCCCCEEEEcCCCCCC--cchh------hcc-------------------HHHHHHHHhhcCCCceEEEe
Confidence 5555444 46789999887654331 1100 110 27899999999999999987
Q ss_pred ec
Q 037735 193 MF 194 (329)
Q Consensus 193 ~~ 194 (329)
..
T Consensus 189 ~~ 190 (274)
T d1iy9a_ 189 TD 190 (274)
T ss_dssp CC
T ss_pred cC
Confidence 53
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=83.71 E-value=1.3 Score=38.72 Aligned_cols=113 Identities=18% Similarity=0.161 Sum_probs=68.8
Q ss_pred CCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC-------CCCcceeeecc
Q 037735 40 VPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL-------PQSRSYYAAGV 112 (329)
Q Consensus 40 ~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l-------~~~~~~f~~gv 112 (329)
.+++.+||=+|=|.|.....+++ + .|.-++...|+-..-.+..-+-+ .+.+.-.+.++
T Consensus 78 ~~~pk~VLiiGgG~G~~~r~~l~---------~------~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~D 142 (290)
T d1xj5a_ 78 IPNPKKVLVIGGGDGGVLREVAR---------H------ASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGD 142 (290)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTT---------C------TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESC
T ss_pred CCCCcceEEecCCchHHHHHHHh---------c------ccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEcc
Confidence 35688999999999987777753 1 23236788888654333221111 12233345555
Q ss_pred ccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEE
Q 037735 113 PGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALV 192 (329)
Q Consensus 113 pgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~ 192 (329)
+..|..+ .+.+++|+|+.=.+= ..+ .|. ..|. ..|++..++.|+|||.+++.
T Consensus 143 a~~~l~~-~~~~~yDvIi~D~~d-p~~-~~~------------------~L~t-------~eF~~~~~~~L~~~Gi~v~q 194 (290)
T d1xj5a_ 143 GVAFLKN-AAEGSYDAVIVDSSD-PIG-PAK------------------ELFE-------KPFFQSVARALRPGGVVCTQ 194 (290)
T ss_dssp HHHHHHT-SCTTCEEEEEECCCC-TTS-GGG------------------GGGS-------HHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHhh-ccccCccEEEEcCCC-CCC-cch------------------hhCC-------HHHHHHHHHhcCCCcEEEEe
Confidence 4445433 356789999975442 211 110 1111 27899999999999999998
Q ss_pred ecc
Q 037735 193 MFS 195 (329)
Q Consensus 193 ~~g 195 (329)
...
T Consensus 195 ~~s 197 (290)
T d1xj5a_ 195 AES 197 (290)
T ss_dssp CCC
T ss_pred cCC
Confidence 744
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.08 E-value=1.9 Score=37.49 Aligned_cols=113 Identities=12% Similarity=0.067 Sum_probs=64.9
Q ss_pred CCCceEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcchHHhhhhcC-------CCCcceeeecc
Q 037735 40 VPNTFRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDNDFNTLFKSL-------PQSRSYYAAGV 112 (329)
Q Consensus 40 ~~~~~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~ndfn~lf~~l-------~~~~~~f~~gv 112 (329)
.+.|.+||-+|-|.|..+..+++ + .+..++...|+-..-.+..-+-+ .+.+--.+.++
T Consensus 76 ~~~pk~vLiiGgG~G~~~~~~l~---------~------~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~D 140 (285)
T d2o07a1 76 HPNPRKVLIIGGGDGGVLREVVK---------H------PSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGD 140 (285)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTT---------C------TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESC
T ss_pred CcCcCeEEEeCCCchHHHHHHHH---------c------CCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEcc
Confidence 35788999999999987777753 1 22357777777643322221111 12233344555
Q ss_pred ccccccccCCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEE
Q 037735 113 PGSFYSSLFPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALV 192 (329)
Q Consensus 113 pgsFy~~lfp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~ 192 (329)
+..|-.+ .++++|+|++-.. +..+ .| ...|.+ .|++..++-|+|||.+++.
T Consensus 141 a~~~l~~--~~~~yDvIi~D~~-~p~~-~~------------------~~L~t~-------eF~~~~~~~L~~~Gi~v~q 191 (285)
T d2o07a1 141 GFEFMKQ--NQDAFDVIITDSS-DPMG-PA------------------ESLFKE-------SYYQLMKTALKEDGVLCCQ 191 (285)
T ss_dssp HHHHHHT--CSSCEEEEEEECC-------------------------------C-------HHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHhc--CCCCCCEEEEcCC-CCCC-cc------------------cccccH-------HHHHHHHHhcCCCCeEEEe
Confidence 4444433 4467888887542 2222 11 112222 7899999999999999998
Q ss_pred eccc
Q 037735 193 MFSV 196 (329)
Q Consensus 193 ~~g~ 196 (329)
..++
T Consensus 192 ~~s~ 195 (285)
T d2o07a1 192 GECQ 195 (285)
T ss_dssp EECT
T ss_pred ccch
Confidence 6543
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=81.94 E-value=1.5 Score=36.46 Aligned_cols=96 Identities=11% Similarity=-0.021 Sum_probs=60.4
Q ss_pred eEEEeeeCCCCcccHHHHHHHHHHHHHHhhhcCCCCccceEEecCCCcc--hHHh-hhhcCCCCcceeeecccccccccc
Q 037735 44 FRIADFGCSTGPNTFIAVQNIIDSVELKFQHECPSAIEFQVFFNDHSDN--DFNT-LFKSLPQSRSYYAAGVPGSFYSSL 120 (329)
Q Consensus 44 ~~IaDlGCstG~nT~~l~~~ii~~~~~~~~~~~~~~pe~~v~~nDLp~n--dfn~-lf~~l~~~~~~f~~gvpgsFy~~l 120 (329)
-+|+|+|||.|-=.+.+.= . .|+.++++.|-..- +|-. +-+.|.-..-....+ .. +.+
T Consensus 67 ~~ilDiGsGaG~PGi~laI--------~-------~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~---R~-E~~ 127 (207)
T d1jsxa_ 67 ERFIDVGTGPGLPGIPLSI--------V-------RPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQS---RV-EEF 127 (207)
T ss_dssp SEEEEETCTTTTTHHHHHH--------H-------CTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEC---CT-TTS
T ss_pred CceeeeeccCCceeeehhh--------h-------cccceEEEEecchHHHHHHHHHHHHcCCcceeeecc---ch-hhh
Confidence 5899999999998887741 1 56789999997642 2222 233333211112222 22 445
Q ss_pred CCCCceeEEEeccceecccCCCCCCCCccceeecCCcHHHHHHHHHHHhhcHHHHHHHHHHHhccCceEEEEe
Q 037735 121 FPKSSLHFVHSSYTLHWLSKVPKVDGVEGSIQTRRFVNEVMEAYAAQFNNDFQTFLNTRAQELVPGGLAALVM 193 (329)
Q Consensus 121 fp~~s~dl~~Ss~alhWLs~~p~~~~n~g~i~~~~~~~~~~~ay~~q~~~D~~~FL~~ra~eL~pGG~l~~~~ 193 (329)
.+..++|+++|=.- ..+..++.....-+++||.+++.-
T Consensus 128 ~~~~~fD~V~sRA~-----------------------------------~~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 128 PSEPPFDGVISRAF-----------------------------------ASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp CCCSCEEEEECSCS-----------------------------------SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred ccccccceehhhhh-----------------------------------cCHHHHHHHHHHhcCCCcEEEEEC
Confidence 56778998876211 134477888888899999977765
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.69 E-value=1.1 Score=38.94 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=18.5
Q ss_pred CceEEEeeeCCCCcccHHHHH
Q 037735 42 NTFRIADFGCSTGPNTFIAVQ 62 (329)
Q Consensus 42 ~~~~IaDlGCstG~nT~~l~~ 62 (329)
+.-+|+|+|||+|..|..+++
T Consensus 21 ~~d~VlEIGPG~G~LT~~Ll~ 41 (278)
T d1zq9a1 21 PTDVVLEVGPGTGNMTVKLLE 41 (278)
T ss_dssp TTCEEEEECCTTSTTHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHh
Confidence 346899999999999999985
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=81.27 E-value=2.4 Score=39.74 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=19.8
Q ss_pred HHHHHHHHHhccCceEEEEec
Q 037735 174 TFLNTRAQELVPGGLAALVMF 194 (329)
Q Consensus 174 ~FL~~ra~eL~pGG~l~~~~~ 194 (329)
.|+.+..+-|+|||++++.++
T Consensus 288 ~Fi~~~l~~Lk~gGr~aiIlP 308 (524)
T d2ar0a1 288 CFMQHIIETLHPGGRAAVVVP 308 (524)
T ss_dssp HHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHhccccCcEEEEEe
Confidence 699999999999999999997
|