Citrus Sinensis ID: 037741

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350---
FKETVVSFIDTFSKRPNKDSHIARSYEAPDDYGVYTDVGNENLSMPTSLYSFYGDVSGESVQVFTEVPPGVSKFGRAYISSYVYNSPYMIPPVRRGQNVRPLPRPQIMEHAIDMNTSVDVNPLRGLEDSSLFDEFDRWFTGDSRVRRRVQHPRSFFQIILGTASMGWLGDEHIHEYLRLISEKQQQYPNALLQHVTHTDTFFWLSLWVTAHNVKIMTDVDMLLIPVNLDGSHWVLARVDFRKNKVWIYDSLLTFCDDKRYKLKFKSLKVIFPRWLEYVGFYNIRPELRSEYPWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFGLRFEFNASHVEYFRKKITVDIFNDDIIL
ccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccHHHHHHccccccccccccccccccHHHHHHHHHccccccEEEEccccccEEEEEcccccccccHHHHHHHHHHHHHHHHHccccccccEEEEcHHHHHHHHHHcccccccccccEEEEcEEcccccEEEEEEEccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEcccccccccccccccHHHHHHHHHHHHccccccccHHcHHHHHHHHHHHHHHccccc
cccEEEEHHHHcccccccccEEEcccccccccEEEEccccccccccHHHHHcccccccccccEHccccHHHHHHHHHHHccccccccccccHHHcccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccccccEEEEcccccHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccEEEEccccHHHHHHcccEEEEcccccEEEEEEEccccEEEEEEEEccccEEEEEEcccccccHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccEEEEcccccccccccccccHHHHHHHHHHHccccccccHcccHHHHHHHHHHHHHccccc
FKETVVSFIDTfskrpnkdshiarsyeapddygvytdvgnenlsmptslysfygdvsgesvqvftevppgvskfgRAYISSyvynspymippvrrgqnvrplprpqimehaidmntsvdvnplrgledsslfdefdrwftgdsrvrrrvqhpRSFFQIILGTasmgwlgdeHIHEYLRLISEKQQQYPNALLQHVTHTDTFFWLSLWVTAHNVKIMTDVDMLLIPVNLDGSHWVLARVDFRKNKVWIYDSlltfcddkryklKFKSLKVIFPRwleyvgfynirpelrseypwkviavksapqqepgtgdcgVFVLMVTMYLMFGLRFEFNASHVEYFRKKITvdifnddiil
fketvvsfidtfskrpnkdshiarsyeapddyGVYTDVGNENLSMPTSLYSFYGDVSGESVQVFTEVPPGVSKFGRAYISSYVYNSPYMIPPVRRGQNVRPLPRPQIMEHAIDMNTSVDVNPLRGLEDSSLFDEFDRwftgdsrvrrrvqhPRSFFQIILGTASMGWLGDEHIHEYLRLISEKQQQYPNALLQHVTHTDTFFWLSLWVTAHNVKIMTDVDMLLIPVNLDGSHWVLARVDFRKNKVWIYDSlltfcddkrykLKFKSLKVIFPRWLEYVGFYNIRPELRSEYPWKVIAVksapqqepgtgdCGVFVLMVTMYLMFGLRFEFNASHVEYFRKkitvdifnddiil
FKETVVSFIDTFSKRPNKDSHIARSYEAPDDYGVYTDVGNENLSMPTSLYSFYGDVSGESVQVFTEVPPGVSKFGRAYISSYVYNSPYMIPPVRRGQNVRPLPRPQIMEHAIDMNTSVDVNPLRGLEDSSLFDEFDRWFTGDSRVRRRVQHPRSFFQIILGTASMGWLGDEHIHEYLRLISEKQQQYPNALLQHVTHTDTFFWLSLWVTAHNVKIMTDVDMLLIPVNLDGSHWVLARVDFRKNKVWIYDSLLTFCDDKRYKLKFKSLKVIFPRWLEYVGFYNIRPELRSEYPWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFGLRFEFNASHVEYFRKKITVDIFNDDIIL
****************************PDDYGVYTDVGNENLSMPTSLYSFYGDVSGESVQVFTEVPPGVSKFGRAYISSYVYNSPYMIPPVRR**************HAIDMNTSVDVNPLRGLEDSSLFDEFDRWFTGDSRVRRRVQHPRSFFQIILGTASMGWLGDEHIHEYLRLISEKQQQYPNALLQHVTHTDTFFWLSLWVTAHNVKIMTDVDMLLIPVNLDGSHWVLARVDFRKNKVWIYDSLLTFCDDKRYKLKFKSLKVIFPRWLEYVGFYNIRPELRSEYPWKVIAVKSA****PGTGDCGVFVLMVTMYLMFGLRFEFNASHVEYFRKKITVDIFNDDII*
***TVVSFIDTFSK*************APDDYGVYTD*******************************************************************************************SSLFDEFDRWFTGDSRVRRRVQHPRSFFQIILGTASMGWLGDEHIHEYLRLISEKQQQYPNALLQHVTHTDTFFWLSLWVTAHNVKIMTDVDMLLIPVNLDGSHWVLARVDFRKNKVWIYDSLLTFCDDKRYKLKFKSLKVIFPRWLEYVGFYNIRPELRSEYPWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFGLRFEFNASHVEYFRKKITVDIFNDDIIL
FKETVVSFIDTFSKRPNKDSHIARSYEAPDDYGVYTDVGNENLSMPTSLYSFYGDVSGESVQVFTEVPPGVSKFGRAYISSYVYNSPYMIPPVRRGQNVRPLPRPQIMEHAIDMNTSVDVNPLRGLEDSSLFDEFDRWFTGDSRVRRRVQHPRSFFQIILGTASMGWLGDEHIHEYLRLISEKQQQYPNALLQHVTHTDTFFWLSLWVTAHNVKIMTDVDMLLIPVNLDGSHWVLARVDFRKNKVWIYDSLLTFCDDKRYKLKFKSLKVIFPRWLEYVGFYNIRPELRSEYPWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFGLRFEFNASHVEYFRKKITVDIFNDDIIL
FKETVVSFIDTFSKRPNKDSHIARSYEAPDDYGVYTDVGNENLSMPTSLYSFYGDVSGESVQVFTEVPPGVSKFGRAYISSYVYNSPYMIPPVRRGQNVRPLPRPQIMEHAIDMNTSVDVNPLRGLEDSSLFDEFDRWFTGDSRVRRRVQHPRSFFQIILGTASMGWLGDEHIHEYLRLISEKQQQYPNALLQHVTHTDTFFWLSLWVTAHNVKIMTDVDMLLIPVNLDGSHWVLARVDFRKNKVWIYDSLLTFCDDKRYKLKFKSLKVIFPRWLEYVGFYNIRPELRSEYPWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFGLRFEFNASHVEYFRKKITVDIFNDDIIL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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FKETVVSFIDTFSKRPNKDSHIARSYEAPDDYGVYTDVGNENLSMPTSLYSFYGDVSGESVQVFTEVPPGVSKFGRAYISSYVYNSPYMIPPVRRGQNVRPLPRPQIMEHAIDMNTSVDVNPLRGLEDSSLFDEFDRWFTGDSRVRRRVQHPRSFFQIILGTASMGWLGDEHIHEYLRLISEKQQQYPNALLQHVTHTDTFFWLSLWVTAHNVKIMTDVDMLLIPVNLDGSHWVLARVDFRKNKVWIYDSLLTFCDDKRYKLKFKSLKVIFPRWLEYVGFYNIRPELRSEYPWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFGLRFEFNASHVEYFRKKITVDIFNDDIIL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query353 2.2.26 [Sep-21-2011]
Q94F30489 Ubiquitin-like-specific p yes no 0.634 0.458 0.246 1e-11
Q5RBB1645 Sentrin-specific protease yes no 0.490 0.268 0.284 2e-11
Q9P0U3644 Sentrin-specific protease yes no 0.490 0.268 0.284 2e-11
P59110640 Sentrin-specific protease yes no 0.484 0.267 0.281 5e-11
Q09353697 Sentrin-specific protease yes no 0.484 0.245 0.242 8e-07
O65278341 Putative ubiquitin-like-s no no 0.470 0.486 0.242 8e-07
O42957568 Ubiquitin-like-specific p yes no 0.470 0.292 0.271 7e-06
Q8GYL3502 Ubiquitin-like-specific p no no 0.456 0.320 0.241 8e-06
Q6NXL6749 Sentrin-specific protease no no 0.447 0.210 0.291 5e-05
Q8WP32755 Sentrin-specific protease N/A no 0.441 0.206 0.295 6e-05
>sp|Q94F30|ESD4_ARATH Ubiquitin-like-specific protease ESD4 OS=Arabidopsis thaliana GN=ESD4 PE=1 SV=1 Back     alignment and function desciption
 Score = 70.9 bits (172), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 115/264 (43%), Gaps = 40/264 (15%)

Query: 104 RPQIMEHAIDMNTSVDVNPLRGLEDSSLFDEFDRWFTGDSRVRRRVQHPRSFF----QII 159
           RP+ +E  +++     + PL   E++ ++    R F+G +R +    H  S      +++
Sbjct: 241 RPKTVEKRVEVPREPFI-PLTEDEEAEVY----RAFSGRNRRKVLATHENSNIDITGEVL 295

Query: 160 LGTASMGWLGDEHIHEYLRLISEKQQQYPNALLQHVTHTDTFFWLSL------------- 206
                  WL DE I+ YL L+ E++ + P   L+   + +TFF+  L             
Sbjct: 296 QCLTPSAWLNDEVINVYLELLKERETREPKKYLK-CHYFNTFFYKKLVSDSGYNFKAVRR 354

Query: 207 WVTAHNVK-IMTDVDMLLIPVNLDGSHWVLARVDFRKNKVWIYDSLLTFCDDKRYKLKFK 265
           W T   +   + D DM+ +P++  G HW LA ++ R++K+   DSL              
Sbjct: 355 WTTQRKLGYALIDCDMIFVPIHR-GVHWTLAVINNRESKLLYLDSLNGVD---------- 403

Query: 266 SLKVIFPRWLEYVGFYNIRPELRS--EYPWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLM 323
              +I     +Y+G        +      W +  V+  PQQ+ G  DCG+F+L    +  
Sbjct: 404 --PMILNALAKYMGDEANEKSGKKIDANSWDMEFVEDLPQQKNGY-DCGMFMLKYIDFFS 460

Query: 324 FGLRFEFNASHVEYFRKKITVDIF 347
            GL   F+  H+ YFR +   +I 
Sbjct: 461 RGLGLCFSQEHMPYFRLRTAKEIL 484
Protease that catalyzes two essential functions in the SUMO pathway: processing of full-length SUMOs to their mature forms and deconjugation of SUMO from targeted proteins. Cleaves precursors of SUM1 and SUM2, but not of SUM3 or SUM5. Able to release SUM1 and SUM2 from conjugates, but unable to cleave SUM3. Acts predominantly as an isopeptidase, cleaving SUMO-conjugated proteins better than SUMO peptides. Plays an important role in the control of flowering time.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: 6EC: 8
>sp|Q5RBB1|SENP1_PONAB Sentrin-specific protease 1 OS=Pongo abelii GN=SENP1 PE=2 SV=1 Back     alignment and function description
>sp|Q9P0U3|SENP1_HUMAN Sentrin-specific protease 1 OS=Homo sapiens GN=SENP1 PE=1 SV=2 Back     alignment and function description
>sp|P59110|SENP1_MOUSE Sentrin-specific protease 1 OS=Mus musculus GN=Senp1 PE=2 SV=1 Back     alignment and function description
>sp|Q09353|SENP_CAEEL Sentrin-specific protease OS=Caenorhabditis elegans GN=ulp-1 PE=2 SV=3 Back     alignment and function description
>sp|O65278|ULP1B_ARATH Putative ubiquitin-like-specific protease 1B OS=Arabidopsis thaliana GN=ULP1B PE=5 SV=2 Back     alignment and function description
>sp|O42957|ULP1_SCHPO Ubiquitin-like-specific protease 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ulp1 PE=3 SV=1 Back     alignment and function description
>sp|Q8GYL3|ULP1A_ARATH Ubiquitin-like-specific protease 1A OS=Arabidopsis thaliana GN=ULP1A PE=2 SV=2 Back     alignment and function description
>sp|Q6NXL6|SENP5_MOUSE Sentrin-specific protease 5 OS=Mus musculus GN=Senp5 PE=2 SV=1 Back     alignment and function description
>sp|Q8WP32|SENP5_MACFA Sentrin-specific protease 5 OS=Macaca fascicularis GN=SENP5 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query353
147778025 701 hypothetical protein VITISV_042738 [Viti 0.753 0.379 0.25 3e-13
195163125 712 GL13015 [Drosophila persimilis] gi|19410 0.484 0.240 0.288 5e-12
296424137 672 hypothetical protein [Tuber melanosporum 0.484 0.254 0.290 7e-12
156405858217 predicted protein [Nematostella vectensi 0.475 0.774 0.312 9e-12
195163123 1499 GL13014 [Drosophila persimilis] gi|19410 0.473 0.111 0.329 2e-11
328708179 467 PREDICTED: hypothetical protein LOC10057 0.555 0.419 0.289 2e-11
196002607214 hypothetical protein TRIADDRAFT_23232 [T 0.501 0.827 0.318 2e-11
198469376 2001 GA25857 [Drosophila pseudoobscura pseudo 0.473 0.083 0.329 2e-11
357602002 692 hypothetical protein KGM_02132 [Danaus p 0.492 0.251 0.273 6e-11
242025267 517 sentrin/sumo-specific protease, putative 0.515 0.352 0.288 8e-11
>gi|147778025|emb|CAN65286.1| hypothetical protein VITISV_042738 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 140/304 (46%), Gaps = 38/304 (12%)

Query: 56  VSGE-SVQVFTE-VPPGVSKFGRAYISSYVYNSPYMIPPVRRGQNVRPLPRPQIMEHAID 113
           +SGE SV V    + P + K  R    S +   P+   P +R +  + + +P        
Sbjct: 417 MSGEFSVYVIPHHLSPAIFKRRREIKKSRILQHPF-TDPTKRKKLRKEIEKPL------- 468

Query: 114 MNTSVDVNPLRGLEDSSLFDEFDRWFTGDSRVRRRVQH---PRSFFQIILGTASMGWLGD 170
             TS D  PLR + + +L + F +W + D      + +    + +FQ +    S  WL D
Sbjct: 469 --TSFD--PLRPISEEAL-ESFQKWMSHDQGSTIDIDYMHIDKKWFQSLSNHGS--WLAD 521

Query: 171 EHIHEYLRLIS--EKQQQYP---NALLQHVTHTDTFFWLSLWVTAHNVKIMTDVDMLLIP 225
              +  +R I   +K  Q+    N +L +  +     +   W          DVD++ +P
Sbjct: 522 TQ-NAQVRWIKHGKKWNQFKLPENDILINYANGLQPLYSIKW---------PDVDIVYVP 571

Query: 226 VNLDGSHWVLARVDFRKNKVWIYDSLLTFCDDKRYKLKFKSLKVIFPRWLEYVGFYNIRP 285
           +N+  SHWVL  V   +  +++YDSL+   ++ R ++  K+L  + P  L  + +Y    
Sbjct: 572 INVRASHWVLGVVYLHRRIIYVYDSLMGINNNARLQVAIKALAKLLPHILNAIAYYGFHG 631

Query: 286 ELRSEY-PWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFGLRFE-FNASHVEYFRKKIT 343
           + +  Y  W++  ++  PQQE   GDCG+FV+    YLM     +   ++ ++ F +K+ 
Sbjct: 632 DTKVNYQEWEIERLQDIPQQE-NDGDCGMFVMKYVEYLMHNHTLKSLTSARMDCFWEKMA 690

Query: 344 VDIF 347
            ++F
Sbjct: 691 AELF 694

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|195163125|ref|XP_002022403.1| GL13015 [Drosophila persimilis] gi|194104395|gb|EDW26438.1| GL13015 [Drosophila persimilis] Back     alignment and taxonomy information
>gi|296424137|ref|XP_002841606.1| hypothetical protein [Tuber melanosporum Mel28] gi|295637851|emb|CAZ85797.1| unnamed protein product [Tuber melanosporum] Back     alignment and taxonomy information
>gi|156405858|ref|XP_001640948.1| predicted protein [Nematostella vectensis] gi|156228085|gb|EDO48885.1| predicted protein [Nematostella vectensis] Back     alignment and taxonomy information
>gi|195163123|ref|XP_002022402.1| GL13014 [Drosophila persimilis] gi|194104394|gb|EDW26437.1| GL13014 [Drosophila persimilis] Back     alignment and taxonomy information
>gi|328708179|ref|XP_003243617.1| PREDICTED: hypothetical protein LOC100574671 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|196002607|ref|XP_002111171.1| hypothetical protein TRIADDRAFT_23232 [Trichoplax adhaerens] gi|190587122|gb|EDV27175.1| hypothetical protein TRIADDRAFT_23232, partial [Trichoplax adhaerens] Back     alignment and taxonomy information
>gi|198469376|ref|XP_002134289.1| GA25857 [Drosophila pseudoobscura pseudoobscura] gi|198146841|gb|EDY72916.1| GA25857 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|357602002|gb|EHJ63234.1| hypothetical protein KGM_02132 [Danaus plexippus] Back     alignment and taxonomy information
>gi|242025267|ref|XP_002433047.1| sentrin/sumo-specific protease, putative [Pediculus humanus corporis] gi|212518563|gb|EEB20309.1| sentrin/sumo-specific protease, putative [Pediculus humanus corporis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query353
UNIPROTKB|H9L083612 SENP1 "Uncharacterized protein 0.492 0.284 0.287 4.4e-11
UNIPROTKB|Q9P0U3644 SENP1 "Sentrin-specific protea 0.490 0.268 0.284 1.4e-10
UNIPROTKB|F1MG84645 SENP1 "Uncharacterized protein 0.490 0.268 0.284 1.4e-10
UNIPROTKB|Q5RBB1645 SENP1 "Sentrin-specific protea 0.490 0.268 0.284 1.4e-10
UNIPROTKB|F1PUE6646 SENP1 "Uncharacterized protein 0.490 0.267 0.284 1.4e-10
RGD|1310275640 Senp1 "SUMO1/sentrin specific 0.484 0.267 0.291 1.8e-10
UNIPROTKB|F1SGU9628 SENP1 "Uncharacterized protein 0.490 0.275 0.279 2.2e-10
MGI|MGI:2445054640 Senp1 "SUMO1/sentrin specific 0.484 0.267 0.281 3.8e-10
ZFIN|ZDB-GENE-060810-183598 si:rp71-56k2.4 "si:rp71-56k2.4 0.501 0.295 0.321 9.6e-10
TAIR|locus:2130864489 ESD4 "EARLY IN SHORT DAYS 4" [ 0.631 0.456 0.262 1.1e-09
UNIPROTKB|H9L083 SENP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 182 (69.1 bits), Expect = 4.4e-11, P = 4.4e-11
 Identities = 57/198 (28%), Positives = 97/198 (48%)

Query:   164 SMGWLGDEHIHEYLRLISEKQQQYPNALLQHVTHTDTFFWLSLWVTAHN-VKIMT----- 217
             ++ WL DE I+ Y+ L+ E+ ++     L  V   +TFF+  L    +  VK  T     
Sbjct:   430 NLNWLNDEIINFYMNLLMERSKEKG---LPTVHAFNTFFFTKLKTAGYQAVKRWTKKVDI 486

Query:   218 -DVDMLLIPVNLDGSHWVLARVDFRKNKVWIYDSLLTFCDDKRYKLKFKSLKVIFPRWLE 276
               VD+LL+P++L G HW LA VDFRK  +  YDS+          +  ++ +++  ++L+
Sbjct:   487 FSVDLLLVPIHL-GVHWCLAVVDFRKKTITYYDSM--------GGINSEACRILL-QYLK 536

Query:   277 YVGFYNIRPELRSEYPWKVIAVKSA--PQQEPGTGDCGVFVLMVTMYLMFGLRFEFNASH 334
                    R E  +   W +++ KS   PQQ  G+ DCG+F       +       F   H
Sbjct:   537 QESLDKKRKEFDTN-GWSLLSKKSQEIPQQMNGS-DCGMFACKYADCITKDKPINFTQQH 594

Query:   335 VEYFRKKITVDIFNDDII 352
             + YFRK++  +I +  ++
Sbjct:   595 MPYFRKRMAWEILHRKLL 612
GO:0006508 "proteolysis" evidence=IEA
GO:0005634 "nucleus" evidence=IEA
GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA
GO:0010724 "regulation of definitive erythrocyte differentiation" evidence=IEA
GO:0016926 "protein desumoylation" evidence=IEA
GO:0016929 "SUMO-specific protease activity" evidence=IEA
GO:0032435 "negative regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA
GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA
UNIPROTKB|Q9P0U3 SENP1 "Sentrin-specific protease 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MG84 SENP1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q5RBB1 SENP1 "Sentrin-specific protease 1" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms
UNIPROTKB|F1PUE6 SENP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1310275 Senp1 "SUMO1/sentrin specific peptidase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1SGU9 SENP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:2445054 Senp1 "SUMO1/sentrin specific peptidase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060810-183 si:rp71-56k2.4 "si:rp71-56k2.4" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
TAIR|locus:2130864 ESD4 "EARLY IN SHORT DAYS 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.220.691
3rd Layer3.4.22.68LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query353
pfam02902216 pfam02902, Peptidase_C48, Ulp1 protease family, C- 3e-21
COG5160578 COG5160, ULP1, Protease, Ulp1 family [Posttranslat 6e-10
PLN03189490 PLN03189, PLN03189, Protease specific for SMALL UB 5e-09
>gnl|CDD|217278 pfam02902, Peptidase_C48, Ulp1 protease family, C-terminal catalytic domain Back     alignment and domain information 
 Score = 90.3 bits (224), Expect = 3e-21
 Identities = 59/215 (27%), Positives = 92/215 (42%), Gaps = 41/215 (19%)

Query: 167 WLGDEHIHEYLRLISEKQQQYPNALLQHVTHTDTFFWLSL-------------------- 206
           WL D  I  YL+L++ + +   +   + V   ++FF+  L                    
Sbjct: 2   WLNDTVIDFYLKLLAHRLES-EDYKNERVHFLNSFFYSKLTKLFPDFKKCKSKKSFKWGK 60

Query: 207 ----------WVTAHNVKIMTDVDMLLIPVNLDGSHWVLARVDFRKNKVWIYDSLLTFCD 256
                     W    N K + DVD++ IP+N DG HWVL  ++  K  + I DSL++   
Sbjct: 61  KKDFYNGVRRWTRKVNKKWLFDVDIIYIPINWDGKHWVLLIINLPKKTITILDSLIS--- 117

Query: 257 DKRYKLKFKSLKVIFPRWLEYVGFYNIRPELRSEY--PWKVIAVKSAPQQEPGTGDCGVF 314
              +    K         L Y+    ++ E       P+++  +   PQQ P +GDCG +
Sbjct: 118 --LHTEAVKKRIRPIDNMLPYLMSEALKKEQDDPDLTPFEIKRLTKVPQQ-PNSGDCGPY 174

Query: 315 VLMVTMYLMFGLRFEFNA--SHVEYFRKKITVDIF 347
           VL     L  G+ FEF      V+ FRKK+ VDI+
Sbjct: 175 VLKFIELLAEGVPFEFLTADKDVDRFRKKLAVDIY 209

This domain contains the catalytic triad Cys-His-Asn. Length = 216
>gnl|CDD|227489 COG5160, ULP1, Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|215622 PLN03189, PLN03189, Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 353
KOG0778511 consensus Protease, Ulp1 family [Posttranslational 100.0
PLN03189490 Protease specific for SMALL UBIQUITIN-RELATED MODI 100.0
COG5160578 ULP1 Protease, Ulp1 family [Posttranslational modi 100.0
PF02902216 Peptidase_C48: Ulp1 protease family, C-terminal ca 99.97
KOG3246223 consensus Sentrin-specific cysteine protease (Ulp1 99.91
KOG0779595 consensus Protease, Ulp1 family [Posttranslational 99.2
PRK11836403 deubiquitinase; Provisional 96.91
PF00770183 Peptidase_C5: Adenovirus endoprotease; InterPro: I 96.77
PF03290423 Peptidase_C57: Vaccinia virus I7 processing peptid 96.6
PRK14848317 deubiquitinase SseL; Provisional 96.47
PRK15371287 effector protein YopJ; Provisional 91.56
PF03421177 YopJ: YopJ Serine/Threonine acetyltransferase; Int 87.67
>KOG0778 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=4.8e-52  Score=416.40  Aligned_cols=241  Identities=24%  Similarity=0.418  Sum_probs=204.9

Q ss_pred             CCccCCCCCCCCCCchhhHhHhhh-ccCcccCCCCCCCcchhHHHhhhhhcCCCceEEEeccCC--cchhhhcccCCCCc
Q 037741           91 PPVRRGQNVRPLPRPQIMEHAIDM-NTSVDVNPLRGLEDSSLFDEFDRWFTGDSRVRRRVQHPR--SFFQIILGTASMGW  167 (353)
Q Consensus        91 ~~~~~~~~~~p~~~~~~~e~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~dL~~L~~~~W  167 (353)
                      +.-++...++|+..  +-+.+++. ..+......+.+.++. -+++.+..++......++.+.+  -.-.||+||.+++|
T Consensus       257 e~~~~~~~~i~l~~--~~~k~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~i~It~~dl~tl~~~~W  333 (511)
T KOG0778|consen  257 EIFQKRGELIPLRS--VQEKLEKPKVEVKKEDSFPPLTEER-EAQVQRAFSSRNSTEILVTHFNIDITGKDLQTLRPGNW  333 (511)
T ss_pred             hhcccccccchhhh--hhcccccccccccCccccccccHHH-HHHHHHHhccCCcccceehhccccccHHHHhhccCccc
Confidence            45556666777765  55555554 3333333444444443 3778888887777777665443  23449999999999


Q ss_pred             cChHHHHHHHHHHHHHhhcCCcccCCceEEEchhhHhhhhhcccc--------cccccccceEEEeecCCCCceEEEEEE
Q 037741          168 LGDEHIHEYLRLISEKQQQYPNALLQHVTHTDTFFWLSLWVTAHN--------VKIMTDVDMLLIPVNLDGSHWVLARVD  239 (353)
Q Consensus       168 LND~VIn~y~~lL~~~~~~~~~~~~~~v~~fnsff~~~L~~~gy~--------v~lf~d~d~I~iPIn~~~~HW~LlVId  239 (353)
                      |||+||||||+||+++..+++.  +|+||+||||||++|.+.||.        ++||+ +|+||||||. +.||+|+|||
T Consensus       334 LNDevINfYm~ll~ers~~~~~--yp~~h~FnTFFy~kL~~~gy~~VkRWTk~v~if~-~d~i~vPIH~-~vHW~l~vid  409 (511)
T KOG0778|consen  334 LNDEVINFYMELLKERSKKDSK--YPKVHAFNTFFYTKLVGRGYAGVKRWTKKVDIFD-KDIIFVPIHL-GVHWCLAVID  409 (511)
T ss_pred             hhHHHHHHHHHHHHhhccccCC--CceEEEEechhhhhhhhcchHHHHhHhhccCccc-cceeEeeeec-CceEEEEEEE
Confidence            9999999999999999888776  899999999999999999995        89999 9999999999 9999999999


Q ss_pred             ccCCceeeeccCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC---CeEEeeeCCCCCCCCCCCCcHHHHH
Q 037741          240 FRKNKVWIYDSLLTFCDDKRYKLKFKSLKVIFPRWLEYVGFYNIRPELRSEY---PWKVIAVKSAPQQEPGTGDCGVFVL  316 (353)
Q Consensus       240 ~~~~~I~~yDSL~~~~~~~~~~~~~~~L~~~i~~l~~yL~~e~~~k~l~~~~---~w~~~~~~~vPqQ~Ngt~DCGVFvl  316 (353)
                      +++++|.|||||++...+.     ++.|       ++||.+|+..+. +.++   .|++..+.++|||.|| +|||||+|
T Consensus       410 ~r~k~i~y~DS~~~~~nr~-----~~aL-------~~Yl~~E~~~k~-~~~~d~s~w~~~~~~~iP~Q~Ng-~DCG~f~c  475 (511)
T KOG0778|consen  410 LREKTIEYYDSLGGGPNRI-----CDAL-------AKYLQDESRDKS-KKDFDVSGWTIEFVQNIPQQRNG-SDCGMFVC  475 (511)
T ss_pred             cccceEEEeeccCCCCcch-----HHHH-------HHHHHHHHhhhh-cCCCCccchhhhhhhccccccCC-CccceEEe
Confidence            9999999999999887776     7777       999999999988 8887   8999988999999999 99999999


Q ss_pred             HHHHHHHCCCCcccChhhHHHHHHHHHHHHHhCCcC
Q 037741          317 MVTMYLMFGLRFEFNASHVEYFRKKITVDIFNDDII  352 (353)
Q Consensus       317 ~~ae~l~~~~~~~ftq~dm~~~R~~m~~eLl~~~l~  352 (353)
                      +|++|++++.|++|+|+||++||++|++|||+++|+
T Consensus       476 ~~~~~~s~~~p~~ftq~dmp~fR~~m~~eI~~~~l~  511 (511)
T KOG0778|consen  476 KYADYISRDVPLTFTQQDMPYFRKKMAKEILHLKLL  511 (511)
T ss_pred             eechhhccCCCcccChhhhHHHHHHHHHHHHhhhcC
Confidence            999999999999999999999999999999999985

>PLN03189 Protease specific for SMALL UBIQUITIN-RELATED MODIFIER (SUMO); Provisional Back     alignment and domain information
>COG5160 ULP1 Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF02902 Peptidase_C48: Ulp1 protease family, C-terminal catalytic domain This family belongs to family C48 of the peptidase classification Back     alignment and domain information
>KOG3246 consensus Sentrin-specific cysteine protease (Ulp1 family) [General function prediction only] Back     alignment and domain information
>KOG0779 consensus Protease, Ulp1 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK11836 deubiquitinase; Provisional Back     alignment and domain information
>PF00770 Peptidase_C5: Adenovirus endoprotease; InterPro: IPR000855 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF03290 Peptidase_C57: Vaccinia virus I7 processing peptidase; InterPro: IPR004970 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PRK14848 deubiquitinase SseL; Provisional Back     alignment and domain information
>PRK15371 effector protein YopJ; Provisional Back     alignment and domain information
>PF03421 YopJ: YopJ Serine/Threonine acetyltransferase; InterPro: IPR005083 The infection of mammalian host cells by Yersinia sp Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query353
2ckg_A225 The Structure Of Senp1 Sumo-2 Co-Complex Suggests A 7e-12
2xph_A238 Crystal Structure Of Human Senp1 With The Bound Cob 9e-12
2xre_A230 Detection Of Cobalt In Previously Unassigned Human 1e-11
2iyc_A226 Senp1 Native Structure Length = 226 1e-11
2iy0_A226 Senp1 (Mutant) Sumo1 Rangap Length = 226 2e-10
2g4d_A205 Crystal Structure Of Human Senp1 Mutant (C603s) In 3e-10
1euv_A221 X-Ray Structure Of The C-Terminal Ulp1 Protease Dom 1e-04
>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A Structural Basis For Discrimination Between Sumo Paralogues During Processing Length = 225 Back     alignment and structure 
Iteration: 1

 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 93/195 (47%), Gaps = 21/195 (10%)
Query: 165 MGWLGDEHIHEYLRLISEKQQQYPNALLQHVTHTDTFFWLSLWVTAHN-VKIMT------ 217
           + WL DE I+ Y+ ++ E+ ++     L  V   +TFF+  L    +  VK  T      
Sbjct: 45  LNWLNDEIINFYMNMLMERSKEKG---LPSVHAFNTFFFTKLKTAGYQAVKRWTKKVDVF 101
Query: 218 DVDMLLIPVNLDGSHWVLARVDFRKNKVWIYDSLLTFCDDKRYKLKFKSLKVIFPRWLEY 277
            VD+LL+P++L G HW LA VDFRK  +  YDS+    ++        + +++  ++L+ 
Sbjct: 102 SVDILLVPIHL-GVHWCLAVVDFRKKNITYYDSMGGINNE--------ACRILL-QYLKQ 151
Query: 278 VGFYNIRPELRSEYPWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFGLRFEFNASHVEY 337
                 R E  +   W++ + KS   Q+    DCG+F       +       F   H+ Y
Sbjct: 152 ESIDKKRKEFDTN-GWQLFSKKSQIPQQMNGSDCGMFACKYADCITKDRPINFTQQHMPY 210
Query: 338 FRKKITVDIFNDDII 352
           FRK++  +I +  ++
Sbjct: 211 FRKRMVWEILHRKLL 225
>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt Length = 238 Back     alignment and structure
>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1 Structure Length = 230 Back     alignment and structure
>pdb|2IYC|A Chain A, Senp1 Native Structure Length = 226 Back     alignment and structure
>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap Length = 226 Back     alignment and structure
>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex With Sumo-1 Length = 205 Back     alignment and structure
>pdb|1EUV|A Chain A, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain In Complex With Smt3, The Yeast Ortholog Of Sumo Length = 221 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query353
1euv_A221 ULP1 protease; SUMO hydrolase, ubiquitin-like prot 5e-19
2xph_A238 Sentrin-specific protease 1; hydrolase, cysteine p 1e-18
2oix_A186 Xanthomonas outer protein D; CLAN CE family 48 cys 2e-17
1th0_A226 SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE 1e-15
2bkr_A212 Sentrin-specific protease 8; protein-binding-hydro 6e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A Length = 221 Back     alignment and structure
 Score = 83.6 bits (206), Expect = 5e-19
 Identities = 42/195 (21%), Positives = 74/195 (37%), Gaps = 32/195 (16%)

Query: 167 WLGDEHIHEYLRLISEKQQQYPNALLQHVTHTDTFFWLSL----------WVTAHNVKIM 216
           WL D  I  +++ I +                ++FF+ +L          W+     +I 
Sbjct: 48  WLNDTIIEFFMKYIEKSTPN--------TVAFNSFFYTNLSERGYQGVRRWMKRKKTQID 99

Query: 217 TDVDMLLIPVNLDGSHWVLARVDFRKNKVWIYDSLLTFCDDKRYKLKFKSLKVIFPRWLE 276
             +D +  P+NL+ SHW L  +D +K  +   DSL    +   + +     K +      
Sbjct: 100 -KLDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESKH 158

Query: 277 YVGFYNIRPELRSEYPWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFGLRFEFNASHVE 336
            +G             + +I +   PQQ  G  DCG++V M T+Y       +F+     
Sbjct: 159 TIGE-----------DFDLIHLDC-PQQPNGY-DCGIYVCMNTLYGSADAPLDFDYKDAI 205

Query: 337 YFRKKITVDIFNDDI 351
             R+ I   I  D +
Sbjct: 206 RMRRFIAHLILTDAL 220
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A Length = 238 Back     alignment and structure
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A Length = 186 Back     alignment and structure
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A Length = 226 Back     alignment and structure
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A Length = 212 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query353
1th0_A226 SMT3-, sentrin-specific protease 2; SUMO, AXAM, SE 100.0
2xph_A238 Sentrin-specific protease 1; hydrolase, cysteine p 100.0
1euv_A221 ULP1 protease; SUMO hydrolase, ubiquitin-like prot 100.0
2bkr_A212 Sentrin-specific protease 8; protein-binding-hydro 100.0
3eay_A323 Sentrin-specific protease 7; ULP, SENP, SUMO, ubiq 100.0
2oix_A186 Xanthomonas outer protein D; CLAN CE family 48 cys 99.97
4ekf_A204 Adenain; alpha and beta protein (A+B), hydrolase; 97.02
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A Back     alignment and structure
Probab=100.00  E-value=2.2e-43  Score=326.30  Aligned_cols=179  Identities=25%  Similarity=0.421  Sum_probs=156.9

Q ss_pred             chhhhcccCCCCccChHHHHHHHHHHHHHhhcCCcccCCceEEEchhhHhhhhhcccc--------cccccccceEEEee
Q 037741          155 FFQIILGTASMGWLGDEHIHEYLRLISEKQQQYPNALLQHVTHTDTFFWLSLWVTAHN--------VKIMTDVDMLLIPV  226 (353)
Q Consensus       155 ~~~dL~~L~~~~WLND~VIn~y~~lL~~~~~~~~~~~~~~v~~fnsff~~~L~~~gy~--------v~lf~d~d~I~iPI  226 (353)
                      ..+|+.||.+++||||+|||||+++|.++..+..   .+++++|||||+++|.+.||+        +++|+ +++||+||
T Consensus        35 ~~~Dl~~L~~~~wLND~iI~fy~~~L~~~~~~~~---~~~~~~f~s~f~~~l~~~~~~~v~~w~~~~~l~~-~~~i~iPi  110 (226)
T 1th0_A           35 TRGDIQTLKNYHWLNDEVINFYMNLLVERNKKQG---YPALHVFSTFFYPKLKSGGYQAVKRWTKGVNLFE-QEIILVPI  110 (226)
T ss_dssp             EHHHHGGGSTTCCCCHHHHHHHHHHHHHHHHHHT---CCCEEECCTTHHHHHHHHTGGGTGGGGTTCCGGG-SSEEEEEE
T ss_pred             EHHHHhhcCCCCccChHHHHHHHHHHHHhhhhcc---CCcEEEEeHHHHHHhhhcccHHHHHHhhcCCccc-CCEEEEeE
Confidence            4559999999999999999999999987764432   579999999999999987763        68888 99999999


Q ss_pred             cCCCCceEEEEEEccCCceeeeccCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCC---CeEEee--eCCC
Q 037741          227 NLDGSHWVLARVDFRKNKVWIYDSLLTFCDDKRYKLKFKSLKVIFPRWLEYVGFYNIRPELRSEY---PWKVIA--VKSA  301 (353)
Q Consensus       227 n~~~~HW~LlVId~~~~~I~~yDSL~~~~~~~~~~~~~~~L~~~i~~l~~yL~~e~~~k~l~~~~---~w~~~~--~~~v  301 (353)
                      |. ++||+|+|||+++++|.+||||++.+...     ++.|       .+|+..++..+. +.++   +|+...  ..++
T Consensus       111 n~-~~HW~l~vi~~~~~~i~~~DSl~~~~~~~-----~~~l-------~~~l~~e~~~k~-~~~~~~~~w~~~~~~~~~~  176 (226)
T 1th0_A          111 HR-KVHWSLVVIDLRKKCLKYLDSMGQKGHRI-----CEIL-------LQYLQDESKTKR-NSDLNLLEWTHHSMKPHEI  176 (226)
T ss_dssp             EE-TTEEEEEEEETTTTEEEEECTTCCCCHHH-----HHHH-------HHHHHHHHHHHT-SCCCCGGGCEEEECCTTTS
T ss_pred             Ee-CcEEEEEEEEcCCCceEEEcCCCCCchHH-----HHHH-------HHHHHHHHHHhc-CCCCCcccceeccccCCCC
Confidence            98 99999999999999999999999887655     5556       788887766554 4443   788754  3689


Q ss_pred             CCCCCCCCCcHHHHHHHHHHHHCCCCcccChhhHHHHHHHHHHHHHhCCcC
Q 037741          302 PQQEPGTGDCGVFVLMVTMYLMFGLRFEFNASHVEYFRKKITVDIFNDDII  352 (353)
Q Consensus       302 PqQ~Ngt~DCGVFvl~~ae~l~~~~~~~ftq~dm~~~R~~m~~eLl~~~l~  352 (353)
                      |||.|| +|||||||+||++++++.+++|+|++|+.||++|+.||++++||
T Consensus       177 PqQ~Ng-~DCGvfvl~~~~~~~~~~~~~f~q~dm~~~R~~~~~ei~~~~l~  226 (226)
T 1th0_A          177 PQQLNG-SDCGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEILHQQLL  226 (226)
T ss_dssp             CCCCSS-SCHHHHHHHHHHHHTTTCCCCCCGGGHHHHHHHHHHHHHHTCCC
T ss_pred             CCCCCC-CCHHHHHHHHHHHHhCCCCCccChhhHHHHHHHHHHHHHhCCcC
Confidence            999999 99999999999999999999999999999999999999999997
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A Back     alignment and structure
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A Back     alignment and structure
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A Back     alignment and structure
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens} Back     alignment and structure
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 353
d1euva_221 d.3.1.7 (A:) Ulp1 protease C-terminal domain {Bake 3e-18
d1th0a_226 d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {H 2e-16
d2iy1a1225 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {H 2e-15
d2bkra1212 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SEN 2e-09
>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 221 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Ulp1 protease C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.2 bits (197), Expect = 3e-18
 Identities = 40/187 (21%), Positives = 70/187 (37%), Gaps = 16/187 (8%)

Query: 167 WLGDEHIHEYLRLISEKQQQYPNALLQHVTHTDTFFWLSL--WVTAHNVKIMTDVDMLLI 224
           WL D  I  +++ I +             T+     +  +  W+     +I   +D +  
Sbjct: 48  WLNDTIIEFFMKYIEKSTPNTVAFNSFFYTNLSERGYQGVRRWMKRKKTQID-KLDKIFT 106

Query: 225 PVNLDGSHWVLARVDFRKNKVWIYDSLLTFCDDKRYKLKFKSLKVIFPRWLEYVGFYNIR 284
           P+NL+ SHW L  +D +K  +   DSL    +   + +     K +       +G     
Sbjct: 107 PINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAMSFAILTDLQKYVMEESKHTIGE---- 162

Query: 285 PELRSEYPWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFGLRFEFNASHVEYFRKKITV 344
                   + +I     PQQ  G  DCG++V M T+Y       +F+       R+ I  
Sbjct: 163 -------DFDLI-HLDCPQQPNGY-DCGIYVCMNTLYGSADAPLDFDYKDAIRMRRFIAH 213

Query: 345 DIFNDDI 351
            I  D +
Sbjct: 214 LILTDAL 220
>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 226 Back     information, alignment and structure
>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 225 Back     information, alignment and structure
>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]} Length = 212 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query353
d1euva_221 Ulp1 protease C-terminal domain {Baker's yeast (Sa 100.0
d1th0a_226 Sentrin-specific protease 2, SENP2 {Human (Homo sa 100.0
d2iy1a1225 Sentrin-specific protease 1 {Human (Homo sapiens) 100.0
d2bkra1212 Sentrin-specific protease 8, SENP8 {Human (Homo sa 99.97
d1nlna_203 Human adenovirus 2 proteinase, adenain {Mastadenov 96.69
>d1euva_ d.3.1.7 (A:) Ulp1 protease C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Adenain-like
domain: Ulp1 protease C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-39  Score=297.29  Aligned_cols=203  Identities=22%  Similarity=0.339  Sum_probs=164.4

Q ss_pred             CCcchhHHHhhhhhcCCCceEEEecc-CCcchhhhcccCCCCccChHHHHHHHHHHHHHhhcCCcccCCceEEEchhhHh
Q 037741          126 LEDSSLFDEFDRWFTGDSRVRRRVQH-PRSFFQIILGTASMGWLGDEHIHEYLRLISEKQQQYPNALLQHVTHTDTFFWL  204 (353)
Q Consensus       126 ~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~dL~~L~~~~WLND~VIn~y~~lL~~~~~~~~~~~~~~v~~fnsff~~  204 (353)
                      +.++.. .++++++++.......... -....+|+.||.+++||||+|||+|+++|.++        .+++++++|+|++
T Consensus         7 lt~~~~-~~~~~~l~~~~~~~~~~~~~~~it~~Dl~~L~~~~WLnD~iIn~y~~~l~~~--------~~~~~~~~s~f~~   77 (221)
T d1euva_           7 LNEKDD-DQVQKALASRENTQLMNRDNIEITVRDFKTLAPRRWLNDTIIEFFMKYIEKS--------TPNTVAFNSFFYT   77 (221)
T ss_dssp             CCHHHH-HHHHHHHTCSSCCEEEEETTEEEEHHHHGGGSTTCCCBHHHHHHHHHHHHHH--------STTEEECCTHHHH
T ss_pred             CCHHHH-HHHHHHHcCCCCceeeecCCcEEeHHHHhhcCCCcccCcHHHHHHHHHHHhc--------CCCeEEeccHHHH
Confidence            334444 6667777766544433111 12446699999999999999999999999877        5789999999999


Q ss_pred             hhhhcccc----------cccccccceEEEeecCCCCceEEEEEEccCCceeeeccCCCCCchhHHHHHHHHHHHHHHHH
Q 037741          205 SLWVTAHN----------VKIMTDVDMLLIPVNLDGSHWVLARVDFRKNKVWIYDSLLTFCDDKRYKLKFKSLKVIFPRW  274 (353)
Q Consensus       205 ~L~~~gy~----------v~lf~d~d~I~iPIn~~~~HW~LlVId~~~~~I~~yDSL~~~~~~~~~~~~~~~L~~~i~~l  274 (353)
                      +|.+.+++          .++++ +|+||||||.+++||+|+|||++.++|.+||||++.....     .   ..++..+
T Consensus        78 ~l~~~~~~~~~~w~~~~~~~~~~-~~~i~iPin~~~~HW~l~vi~~~~~~i~~~DSl~~~~~~~-----~---~~i~~~l  148 (221)
T d1euva_          78 NLSERGYQGVRRWMKRKKTQIDK-LDKIFTPINLNQSHWALGIIDLKKKTIGYVDSLSNGPNAM-----S---FAILTDL  148 (221)
T ss_dssp             HHHHHTGGGTTTTTGGGTSCGGG-CSEEEEEEEETTTEEEEEEEETTTTEEEEECSSCCSCCHH-----H---HHHHHHH
T ss_pred             hHhhhchHHHHHHHHhcccchhh-cceeEeeEecccceEEEEEeeccccceeeeccccCCCcHH-----H---HHHHHHH
Confidence            99887763          46777 9999999998789999999999999999999999877654     1   1223444


Q ss_pred             HHHHhhhccCCCCCCCCCeEEeeeCCCCCCCCCCCCcHHHHHHHHHHHHCCCCcccChhhHHHHHHHHHHHHHhCCc
Q 037741          275 LEYVGFYNIRPELRSEYPWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFGLRFEFNASHVEYFRKKITVDIFNDDI  351 (353)
Q Consensus       275 ~~yL~~e~~~k~l~~~~~w~~~~~~~vPqQ~Ngt~DCGVFvl~~ae~l~~~~~~~ftq~dm~~~R~~m~~eLl~~~l  351 (353)
                      .+|+..+...+. +.  +|.... .++|||.|| +|||||||+||++++.|.+++|+|+||+++|++|+.+|++++|
T Consensus       149 ~~~l~~~~~~~~-~~--~~~~~~-~~~PqQ~N~-~DCGvfvl~~~~~~~~~~~~~~~q~d~~~~R~~i~~~il~~~l  220 (221)
T d1euva_         149 QKYVMEESKHTI-GE--DFDLIH-LDCPQQPNG-YDCGIYVCMNTLYGSADAPLDFDYKDAIRMRRFIAHLILTDAL  220 (221)
T ss_dssp             HHHHHHHTTSSS-CT--TCEEEE-ECCCCCSSS-STHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHhhc-CC--CCeeee-ccCCCCCCC-CChHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHHHHHhhc
Confidence            788887776654 33  566653 589999999 9999999999999999999999999999999999999999876
>d1th0a_ d.3.1.7 (A:) Sentrin-specific protease 2, SENP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iy1a1 d.3.1.7 (A:419-643) Sentrin-specific protease 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bkra1 d.3.1.7 (A:1-212) Sentrin-specific protease 8, SENP8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nlna_ d.3.1.7 (A:) Human adenovirus 2 proteinase, adenain {Mastadenovirus H2 [TaxId: 10515]} Back     information, alignment and structure