Citrus Sinensis ID: 037752

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330--
Protein Sequence
MASSSSSINMNPQIKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDKLNRGNEISPSLLSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDSHGISRNAFGQNHPAAGYLELSNIVIKYAKGIPLALKVLGRYLFGRSEEEWENAIEKLKRIPHMDIQKVLKVSYDGLDDEEQNIFLDIACFFKGQHRDFVMNFQDACGFSAKIGICDLVDKSLVIISNNKITMHDLLQEMGREIVRQESIKDSGKRSRLWHHEDIDQVLSKNTN
Secondary Structure (PSIPRED)
cccccccccccccccEEEEEcccccccccccHHHHHHHHHcccccEEEcccccccccccHHHHHHHHHccEEEEEEcccccccHHcHHHHHHHHHcHHccccEEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHccccccccccEEEccccccccHHHHHHHHHHHHccccccHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHccccccccHHccccccEEEEEccEEEEEHHHHHHHHHHHHHccccccccccccccccHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHHHccccEcEccccccccccHHHHHHHHHHccEEEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEEEEccHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHccHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHEEEEcccccHHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHcEEEEEccccEEHHHHHHHHHHHHHHHcccccccccEEcccHHHHHHHHHcccc
Coil and Loop (DISEMBL)
masssssinmnpqikydvflsfrgkdvrHNFISHLNAALCRKKIVTFIDdklnrgneispsllsaiegsKISIVIFSKGYASSRWCLNELVKILEsknkygqivvpvfylvdpsdvrnqtgtfgdsFSKLEERFKEKIDMLQTWRIAMREAanlsgfdshgisrnafgqnhpaagylELSNIVIKYAKGIPLALKVLGRYLFGRSEEEWENAIEKLKRIPHMDIQKVLKVSydglddeeqNIFLDIACFFKGQHRDFVMNFQDacgfsakigicdlvdkslviisNNKITMHDLLQEMGREIVRqesikdsgkrsrlwhhedidqVLSKNTN
Flexible Loop (DISEMBL)
masssssinmnpqIKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDKLNRGNEISPSLLSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDSHGISRNAFGQNHPAAGYLELSNIVIKYAKGIPLALKVLGRYLFGRSEEEWENAIeklkriphmdiQKVLKVSYDGLDDEEQNIFLDIACFFKGQHRDFVMNFQDACGFSAKIGICDLVDKSLVIISNNKITMHDLLQEMGREIVRQESikdsgkrsrlwhhedidqvlskntn
Low Complexity Region (SEG)
MASSSSSINMNPQIKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDKLNRGNEISPSLLSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDSHGISRNAFGQNHPAAGYLELSNIVIKYAKGIPLALKVLGRYLFGRSEEEWENAIEKLKRIPHMDIQKVLKVSYDGLDDEEQNIFLDIACFFKGQHRDFVMNFQDACGFSAKIGICDLVDKSLVIISNNKITMHDLLQEMGREIVRQESIKDSGKRSRLWHHEDIDQVLSKNTN
Disordered region (IsUnstruct)
************QIKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDKLNRGNEISPSLLSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDSHGISRNAFGQNHPAAGYLELSNIVIKYAKGIPLALKVLGRYLFGRSEEEWENAIEKLKRIPHMDIQKVLKVSYDGLDDEEQNIFLDIACFFKGQHRDFVMNFQDACGFSAKIGICDLVDKSLVIISNNKITMHDLLQEMGREI******************************
Disordered Region (DISOPRED)
**************KYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDKLNRGNEISPSLLSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDSHGISRNAFGQNHPAAGYLELSNIVIKYAKGIPLALKVLGRYLFGRSEEEWENAIEKLKRIPHMDIQKVLKVSYDGLDDEEQNIFLDIACFFKGQHRDFVMNFQDACGFSAKIGICDLVDKSLVIISNNKITMHDLLQEMGREIVRQESIKDSGKRSRLWHHEDIDQVLSKN**
Disordered Region (DISEMBL)
*********MNPQIKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDKLNRGNEISPSLLSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDSHGISRNAFGQNHPAAGYLELSNIVIKYAKGIPLALKVLGRYLFGRSEEEWENAIEKLKRIPHMDIQKVLKVSYDGLDDEEQNIFLDIACFFKGQHRDFVMNFQDACGFSAKIGICDLVDKSLVIISNNKITMHDLLQEMGREIVRQ**********RLWHHEDIDQVLSKNTN
Disordered Region (DISPRO)
***********PQIKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDKLNRGNEISPSLLSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDSHGISRNAFGQNHPAAGYLELSNIVIKYAKGIPLALKVLGRYLFGRSEEEWENAIEKLKRIPHMDIQKVLKVSYDGLDDEEQNIFLDIACFFKGQHRDFVMNFQDACGFSAKIGICDLVDKSLVIISNNKITMHDLLQEMGREIVRQESIKDSGKRSRLWHHEDIDQVLSK***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSSSSINMNPQIKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDKLNRGNEISPSLLSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDSHGISRNAFGQNHPAAGYLELSNIVIKYAKGIPLALKVLGRYLFGRSEEEWENAIEKLKRIPHMDIQKVLKVSYDGLDDEEQNIFLDIACFFKGQHRDFVMNFQDACGFSAKIGICDLVDKSLVIISNNKITMHDLLQEMGREIVRQESIKDSGKRSRLWHHEDIDQVLSKNTN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	332	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.424	0.123	0.549	3e-38
O82500	1095	Putative disease resistan	no	no	0.448	0.136	0.512	4e-34
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.421	0.107	0.524	9e-34
Q9FL92	1372	Probable WRKY transcripti	no	no	0.448	0.108	0.483	3e-32
Q9FH83	1288	Probable WRKY transcripti	no	no	0.457	0.118	0.461	4e-29
Q9C5Q9	411	Protein PHLOEM PROTEIN 2-	no	no	0.427	0.345	0.414	3e-24
Q9FHE8	392	Protein PHLOEM PROTEIN 2-	no	no	0.439	0.372	0.439	1e-23
Q9FHE9	354	Protein PHLOEM PROTEIN 2-	no	no	0.460	0.432	0.380	2e-23
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.454	0.079	0.414	5e-23
Q9FKN7	1613	Protein DA1-related 4 OS=	no	no	0.481	0.099	0.393	3e-22

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  159 bits (402), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 78/142 (54%), Positives = 99/142 (69%), Gaps = 1/142 (0%)

Query: 16  YDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDK-LNRGNEISPSLLSAIEGSKISIV 74
           YDVFLSFRG+D R  F SHL   L  K I TF DDK L  G  I   L  AIE S+ +IV
Sbjct: 12  YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIV 71

Query: 75  IFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERF 134
           +FS+ YA+SRWCLNELVKI+E K ++ Q V+P+FY VDPS VRNQ  +F  +F + E ++
Sbjct: 72  VFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKY 131

Query: 135 KEKIDMLQTWRIAMREAANLSG 156
           K+ ++ +Q WRIA+ EAANL G
Sbjct: 132 KDDVEGIQRWRIALNEAANLKG 153

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  145 bits (366), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 80/156 (51%), Positives = 104/156 (66%), Gaps = 7/156 (4%)

Query: 1   MASSSSSINMNPQIKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDKLNRGNEISP 60
           MASSSS+       +YDVF SFRG+DVR+NF+SHL      K IVTF DD + R + I  
Sbjct: 1   MASSSSN-----SWRYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGH 55

Query: 61  SLLSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
            L +AI  SKIS+V+FS+ YASS WCL+EL++I++ K + G  V+PVFY VDPSD+R QT
Sbjct: 56  ELRAAIRESKISVVLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQT 115

Query: 121 GTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSG 156
           G FG SF  LE    +  +    WR A+ +AAN+ G
Sbjct: 116 GKFGMSF--LETCCGKTEERQHNWRRALTDAANILG 149

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score =  144 bits (363), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 76/145 (52%), Positives = 100/145 (68%), Gaps = 5/145 (3%)

Query: 15  KYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDKLNRGNEISPSLLSAIEGSKISIV 74
           +YDVF SFRG+DVR +F+SHL   L R K +TFIDD++ R   I P LLSAI+ S+I+IV
Sbjct: 11  RYDVFPSFRGEDVRDSFLSHLLKEL-RGKAITFIDDEIERSRSIGPELLSAIKESRIAIV 69

Query: 75  IFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERF 134
           IFSK YASS WCLNELV+I +      Q+V+P+F+ VD S+V+ QTG FG  F   EE  
Sbjct: 70  IFSKNYASSTWCLNELVEIHKCYTNLNQMVIPIFFHVDASEVKKQTGEFGKVF---EETC 126

Query: 135 KEKI-DMLQTWRIAMREAANLSGFD 158
           K K  D  Q+W+ A+   A ++G+D
Sbjct: 127 KAKSEDEKQSWKQALAAVAVMAGYD 151

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score =  139 bits (350), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 73/151 (48%), Positives = 100/151 (66%), Gaps = 2/151 (1%)

Query: 178 ELSNIVIKYAKGIPLALKVLGRYLFGRSEE-EWENAIEKLKRIPHMDIQKVLKVSYDGLD 236
           E+S  VIKYA G PLAL + GR L G+    E E A  KLK  P       +K SYD L+
Sbjct: 321 EVSMKVIKYANGHPLALNLYGRELMGKKRPPEMEIAFLKLKECPPAIFVDAIKSSYDTLN 380

Query: 237 DEEQNIFLDIACFFKGQHRDFVMNFQDACGFSAKIGICDLVDKSLVIISNNKITMHDLLQ 296
           D E+NIFLDIACFF+G++ D+VM   + CGF   +GI  LV+KSLV IS N++ MH+L+Q
Sbjct: 381 DREKNIFLDIACFFQGENVDYVMQLLEGCGFFPHVGIDVLVEKSLVTISENRVRMHNLIQ 440

Query: 297 EMGREIVRQESIKDSGKRSRLWHHEDIDQVL 327
           ++GR+I+ +E+ + + +RSRLW    I  +L
Sbjct: 441 DVGRQIINRET-RQTKRRSRLWEPCSIKYLL 470

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3

 Score =  129 bits (323), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 71/154 (46%), Positives = 95/154 (61%), Gaps = 2/154 (1%)

Query: 178 ELSNIVIKYAKGIPLALKVLGRYLFGRSE-EEWENAIEKLKRIPHMDIQKVLKVSYDGLD 236
           ELS  VI YA G PLA+ V GR L G+ +  E E A  KLKR P   I    K +YD L 
Sbjct: 328 ELSVRVINYANGNPLAISVYGRELKGKKKLSEMETAFLKLKRRPPFKIVDAFKSTYDTLS 387

Query: 237 DEEQNIFLDIACFFKGQHRDFVMNFQDACGFSAKIGICDLVDKSLVIISNNKITMHDLLQ 296
           D E+NIFLDIACFF+G++ ++V+   + CGF   + I  LVDK LV IS N++ +H L Q
Sbjct: 388 DNEKNIFLDIACFFQGENVNYVIQLLEGCGFFPHVEIDVLVDKCLVTISENRVWLHKLTQ 447

Query: 297 EMGREIVRQESIKDSGKRSRLWHHEDIDQVLSKN 330
           ++GREI+  E+++   +R RLW    I  +L  N
Sbjct: 448 DIGREIINGETVQIE-RRRRLWEPWSIKYLLEYN 480

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Acts also as a disease resistance protein conferring resistance to Ralstonia solanacearum.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1

 Score =  112 bits (281), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 61/147 (41%), Positives = 90/147 (61%), Gaps = 5/147 (3%)

Query: 8   INMNPQIKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDKLNRGNEISPSLLSAIE 67
           I   PQ    VF++FRGKD+R  F+S L  AL ++KI  FID++  RG  +  SL   I 
Sbjct: 18  IPTGPQ----VFINFRGKDLRKGFMSFLKPALKKEKINVFIDEQEERGKYLI-SLFDTIG 72

Query: 68  GSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSF 127
            SKI++VIFS+GY  S WC++ELVKI E  ++   I++P+FY +D   V++ TG FGD+F
Sbjct: 73  ESKIALVIFSEGYCESHWCMDELVKIKEYMDQNRLIIIPIFYRLDLDVVKDLTGKFGDNF 132

Query: 128 SKLEERFKEKIDMLQTWRIAMREAANL 154
             L ++++ +   L  W  A+     L
Sbjct: 133 WDLVDKYQPEPKKLHKWTEALFSVCEL 159

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1

 Score =  110 bits (276), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/148 (43%), Positives = 90/148 (60%), Gaps = 2/148 (1%)

Query: 1   MASSSSSINMNPQIKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDKLNRGNEISP 60
           MASSSS +   P     VF+ FRG DVR +FIS L  AL    I  FID+    G+E++ 
Sbjct: 1   MASSSSVVKPTP-TGPQVFICFRGADVRKHFISFLVPALREANINVFIDENEFLGSEMA- 58

Query: 61  SLLSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
           +LL+ IE S++++VIFS  +  S  CLNEL KI E K++   IV+P+FY V PS V+   
Sbjct: 59  NLLTRIEESELALVIFSVDFTRSHRCLNELAKIKERKDQGRLIVIPIFYKVKPSAVKFLE 118

Query: 121 GTFGDSFSKLEERFKEKIDMLQTWRIAM 148
           G FGD+F  LE   +  + + Q W+ A+
Sbjct: 119 GKFGDNFRALERNNRHMLPITQKWKEAL 146

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1

 Score =  110 bits (274), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 90/155 (58%), Gaps = 2/155 (1%)

Query: 3   SSSSSINMNPQIKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDKLNRGNEISPSL 62
           ++SSS+   P     VF++FRGKD+R+ F+S L  A+    I  FID     G ++  +L
Sbjct: 2   AASSSVRPTPT-GPQVFINFRGKDLRNGFLSFLEPAMREANINVFIDKDEVVGTDLV-NL 59

Query: 63  LSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGT 122
              I+ S++++VIFSK Y SS WCL+EL +I +  N+ G   +P+FY + PS V    G 
Sbjct: 60  FVRIQESRVAVVIFSKDYTSSEWCLDELAEIKDCINQGGLNAIPIFYKLAPSSVLELKGG 119

Query: 123 FGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGF 157
           FGD+F  L+E++K   +  Q W+ A+     L G 
Sbjct: 120 FGDTFRVLKEKYKNDPERTQKWQEALESIPKLKGL 154

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score =  108 bits (270), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 65/157 (41%), Positives = 87/157 (55%), Gaps = 6/157 (3%)

Query: 176  YLELSNIVIKYAKGIPLALKVLGRYLFGRSEEEWENAIEKLKRIPHMDIQKVLKVSYDGL 235
            Y  LS  ++K++ G P  L+ L        + EW    +++K    + I  + + S  GL
Sbjct: 997  YKTLSLELVKFSNGNPQVLQFLSSI-----DREWNKLSQEVKTTSPIYIPGIFEKSCCGL 1051

Query: 236  DDEEQNIFLDIACFFKGQHRDFVMNFQDACGFSAKIGICDLVDKSLVIIS-NNKITMHDL 294
            DD E+ IFLDIACFF    +D V    D CGFSA +G   LVDKSL+ IS +N + M   
Sbjct: 1052 DDNERGIFLDIACFFNRIDKDNVAMLLDGCGFSAHVGFRGLVDKSLLTISQHNLVDMLSF 1111

Query: 295  LQEMGREIVRQESIKDSGKRSRLWHHEDIDQVLSKNT 331
            +Q  GREIVRQES    G RSRLW+ + I  V   +T
Sbjct: 1112 IQATGREIVRQESADRPGDRSRLWNADYIRHVFINDT 1148

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKN7|DAR4_ARATH Protein DA1-related 4 OS=Arabidopsis thaliana GN=DAR4 PE=1 SV=2

 Score =  105 bits (263), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 94/165 (56%), Gaps = 5/165 (3%)

Query: 163 SRNAFGQNHPAAGYLELSNIVIKYAKGIPLALKVLGRYLFGRSEEEWENAIEKLKRIPHM 222
           S++ FG N P     +LS  VI Y  G PLAL + GR L G+ + E E A  +LK  P +
Sbjct: 336 SQSVFGINEPEQNDRKLSMKVIDYVNGNPLALSIYGRELMGK-KSEMETAFFELKHCPPL 394

Query: 223 DIQKVLKVSYDGLDDEEQNIFLDIACFFKGQHRDFVMNFQDACGFSAKIGICDLVDKSLV 282
            IQ VLK +Y  L D E+NI LDIA FFKG+  ++VM   +   +  ++ I  LVDK ++
Sbjct: 395 KIQDVLKNAYSALSDNEKNIVLDIAFFFKGETVNYVMQLLEESHYFPRLAIDVLVDKCVL 454

Query: 283 IISNNKITMHDLLQEMGREIVRQESIKDSGKRSRLWHHEDIDQVL 327
            IS N + M++L+Q+  +EI   E I+     +R+W    I  +L
Sbjct: 455 TISENTVQMNNLIQDTCQEIFNGE-IETC---TRMWEPSRIRYLL 495

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	332
357499087	962	Disease resistance-like protein GS3-3 [M	0.948	0.327	0.437	1e-71
147799796	1350	hypothetical protein VITISV_024109 [Viti	0.900	0.221	0.444	6e-70
357469223	581	Tir-nbs-lrr resistance protein, partial	0.930	0.531	0.451	2e-60
255568980	642	hypothetical protein RCOM_1122080 [Ricin	0.915	0.473	0.420	2e-59
147787212	600	hypothetical protein VITISV_032562 [Viti	0.783	0.433	0.421	9e-57
297841683	797	predicted protein [Arabidopsis lyrata su	0.924	0.385	0.421	2e-55
359495270	1154	PREDICTED: TMV resistance protein N-like	0.481	0.138	0.627	2e-52
224127754	1125	tir-nbs-lrr resistance protein [Populus	0.451	0.133	0.675	2e-52
255537139	1137	leucine-rich repeat-containing protein,	0.5	0.145	0.598	4e-52
359486073	1296	PREDICTED: TMV resistance protein N-like	0.506	0.129	0.571	5e-52

>gi|357499087|ref|XP_003619832.1| Disease resistance-like protein GS3-3 [Medicago truncatula] gi|355494847|gb|AES76050.1| Disease resistance-like protein GS3-3 [Medicago truncatula]

 Score =  276 bits (705), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 165/377 (43%), Positives = 222/377 (58%), Gaps = 62/377 (16%)

Query: 16  YDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDK-LNRGNEISPSLLSAIEGSKISIV 74
           YDVF+SFRG D R  F  +L  AL  K I TFIDDK L RG+EI+PSL  +IE S+I+I+
Sbjct: 20  YDVFISFRGTDTRFGFTGNLYKALSDKGIHTFIDDKELKRGDEITPSLRKSIEDSRIAII 79

Query: 75  IFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERF 134
           +FSK YASS +CL+ELV I+    +  ++V+P+FY  +PS VR    ++G+SF+K EE F
Sbjct: 80  VFSKDYASSSFCLDELVHIIHYFKEKSRLVLPIFYGTEPSQVRKLNDSYGESFAKHEEGF 139

Query: 135 ---KEKIDMLQTWRIAMREAANLSG--------------------------------FDS 159
              KE ++ L TW+ A+ EAANLSG                                  S
Sbjct: 140 QNNKEHMERLLTWKKALNEAANLSGHHFNQGFKVLVGEPSWLGRGSRVIITTRDKHLLSS 199

Query: 160 HGISR--NAFGQNHPAA----------------GYLELSNIVIKYAKGIPLALKVLGRYL 201
           HGI++   A+G N   A                 Y  + N  IKYA G+PLAL+V+G  L
Sbjct: 200 HGITKIYEAYGLNKEQALELLRTKAFKSKKNDSSYDYILNRAIKYASGLPLALEVVGSNL 259

Query: 202 FGRSEEEWENAIEKLKRIPHMDIQKVLKVSYDGLDDEEQNIFLDIACFFKGQHRDFVMN- 260
           FG S  E E+ ++K +RIP  DIQK+LKVS+D LD+E+Q++FLDIACFF      +V   
Sbjct: 260 FGMSTTECESTLDKYERIPPEDIQKILKVSFDALDEEQQSVFLDIACFFNWCESAYVEEI 319

Query: 261 FQDACGFSAKIGICDLVDKSLVIISNNK-------ITMHDLLQEMGREIVRQESIKDSGK 313
            +   G   K  +  LVDKSL+  S  +       +T+HDLL++MG+EIVR ESIK+ G+
Sbjct: 320 LEYHYGHCIKSHLRALVDKSLIKTSIQRHGMKFELVTLHDLLEDMGKEIVRHESIKEPGE 379

Query: 314 RSRLWHHEDIDQVLSKN 330
           RSRLW+H+DI  VL  N
Sbjct: 380 RSRLWYHDDIFDVLQNN 396

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147799796|emb|CAN70507.1| hypothetical protein VITISV_024109 [Vitis vinifera]

 Score =  270 bits (691), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 160/360 (44%), Positives = 205/360 (56%), Gaps = 61/360 (16%)

Query: 16  YDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDK-LNRGNEISPSLLSAIEGSKISIV 74
           YDVFLSFRG D R NF  +L   L    I TF DDK L +G +I+  L   IE SK  IV
Sbjct: 20  YDVFLSFRGGDTRRNFTDYLYDTLTAYGIQTFRDDKELEKGGDIASDLFRDIEESKFFIV 79

Query: 75  IFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLE-ER 133
           IFSK YA SRWCLNELVKI+E K++   +V+P+FY VDPSDVRNQ G+FGD  +  E + 
Sbjct: 80  IFSKNYAYSRWCLNELVKIIERKSQKESMVLPIFYHVDPSDVRNQRGSFGDGLAYHERDA 139

Query: 134 FKEKIDMLQTWRIAMREAANLSG--FDSHGISRNAFGQNHPAAGYLELSNIVI------- 184
            +EK +M+Q WRIA+REAANLSG   +  G+  NA         +    +I+I       
Sbjct: 140 NQEKKEMIQKWRIALREAANLSGCHVNDQGVLHNALEYLAEEKDWFWAKSIIIITSRDKQ 199

Query: 185 ---KYAKGIP--------------------------------------------LALKVL 197
              +Y   IP                                            LALKVL
Sbjct: 200 VLAQYGADIPYEVSKLNKEEAIKLFSLWAFKQNRPKEVYKNLSYNIIDYANGLPLALKVL 259

Query: 198 GRYLFGRSEEEWENAIEKLKRIPHMDIQKVLKVSYDGLDDEEQNIFLDIACFFKGQHRDF 257
           G  LFG+    WE+A+ KLK IPHM+I  VL++S+DGLDD ++ IFLD+ACFFKG +RDF
Sbjct: 260 GASLFGKKISNWESALCKLKIIPHMEIHNVLRISFDGLDDIDKGIFLDVACFFKGDNRDF 319

Query: 258 VMNFQDACGFSAKIGICDLVDKSLVIISNNKITMHDLLQEMGREIVRQESIKDSGKRSRL 317
           V       G  A+  I  L D+ L+ +S N + +HDL+Q+MG EI+RQE  +D G+RSRL
Sbjct: 320 VSRIL---GPHAEHAITTLDDRCLITVSENMLDVHDLIQQMGWEIIRQECPEDPGRRSRL 376

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357469223|ref|XP_003604896.1| Tir-nbs-lrr resistance protein, partial [Medicago truncatula] gi|355505951|gb|AES87093.1| Tir-nbs-lrr resistance protein, partial [Medicago truncatula]

 Score =  239 bits (609), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 148/328 (45%), Positives = 195/328 (59%), Gaps = 19/328 (5%)

Query: 5   SSSINMNPQIKYDV-FLSFRGKDVRHNFISHLNAALCRKKIVTFIDD-KLNRGNEISPSL 62
           SS++   P+I YDV FLSFRG D R  FISHL ++L    I  F DD +L RG  IS +L
Sbjct: 10  SSNLPDQPKI-YDVYFLSFRGVDNRSKFISHLYSSLQNSAIFAFRDDDELQRGEHISIAL 68

Query: 63  LSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGT 122
           L AI  S+ISIV+FS  YA+SRWC+ EL KI+E     G +VVPVFY VDPS+VR+Q   
Sbjct: 69  LRAIGQSRISIVVFSTNYANSRWCMLELEKIMEIARTRGLVVVPVFYEVDPSEVRHQNSQ 128

Query: 123 FGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDSHGISRNAFGQNHPAAGYLELSNI 182
           FG  F  L  +          WR  + +   +SGF +   SR++             S  
Sbjct: 129 FGKGFDDLISKISVDESTKSNWRREIFDICGISGF-TLIDSRDS-------------STD 174

Query: 183 VIKYAKGIPLALKVLGRYLFGRSEEEWENAIEKLKRIPHMDIQKVLKVSYDGLDDE-EQN 241
           VI Y+  +PLAL+VLG YL      EW+  ++KLK IP   +Q+ LKVS+ GL D  E+ 
Sbjct: 175 VIGYSGRLPLALEVLGSYLSDCEITEWQKVLDKLKCIPDFQVQEKLKVSFKGLKDYMEKQ 234

Query: 242 IFLDIACFFKGQHRDFVMNFQDACGFSAKIGICDLVDKSLVII-SNNKITMHDLLQEMGR 300
           IFLDIACFF G  +  V+   + CGF A  G   L +++LV +   NK+ MHDLL++MGR
Sbjct: 235 IFLDIACFFIGVDKKDVIQILNGCGFFADXGNKVLFERALVTVXKGNKLRMHDLLRDMGR 294

Query: 301 EIVRQESIKDSGKRSRLWHHEDIDQVLS 328
           +IV +ES  D    SRLWH E++  +LS
Sbjct: 295 QIVFEESPSDPENCSRLWHREEVFDILS 322

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568980|ref|XP_002525460.1| hypothetical protein RCOM_1122080 [Ricinus communis] gi|223535273|gb|EEF36950.1| hypothetical protein RCOM_1122080 [Ricinus communis]

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 146/347 (42%), Positives = 201/347 (57%), Gaps = 43/347 (12%)

Query: 15  KYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDKLNRGNEISPSLLSAIEGSKISIV 74
           KYDVF+SFRGKD+R  F+SHL+ AL + +I  FID+ + RG EIS SLL  IE S +S+V
Sbjct: 15  KYDVFISFRGKDIRDGFLSHLHEALRQSQINAFIDESIERGKEISSSLLKIIEESHVSVV 74

Query: 75  IFSKGYASSRWCLNELV-----KILESKN----KYG------------QIVVPVFYLVDP 113
           IF++ YA S W  ++L+     +ILE  N     Y             + V  +  L   
Sbjct: 75  IFTENYADSPWPDSKLIGEVVSQILEKLNNVISSYNCADGLVGNDSSVKAVKSLLCLEST 134

Query: 114 SDVR---------------NQTGTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFD 158
            DVR               N+      S   +  R K+   +L+     + E   L+  +
Sbjct: 135 DDVRFVGIRGMGEIEFLVGNRASYCSGSRVVITSRNKQ---LLRNMDAKIYEVKKLNYLE 191

Query: 159 S-HGISRNAFGQNHPAAGYLELSNIVIKYAKGIPLALKVLGRYLFGRSEEEWENAIEKLK 217
           + H  S +AF  NH    Y+ LS + + YA GIPLALKV G  L+G+S EEWE  +EKLK
Sbjct: 192 ALHLFSSHAFKGNHLKKEYMGLSRMAVTYAGGIPLALKVFGSNLYGKSIEEWEGELEKLK 251

Query: 218 RIPHMDIQKVLKVSYDGLDDEEQNIFLDIACFFKGQHRDFVMNFQDACGFSAKIGICDLV 277
                 IQ++L++S+DGLD +E+ +FLDIACFFKG  +D V    D+CGF AK G+  L 
Sbjct: 252 ATSDQKIQRMLRISFDGLDKKEKEVFLDIACFFKGGDKDAVTKILDSCGFFAKCGVSHLS 311

Query: 278 DKSLVII-SNNKITMHDLLQEMGREIVRQESIKDSGKRSRLWHHEDI 323
           DKSL+ I S+N + MHDLLQ+MG++IV +E  K+ G+RSRLW  +DI
Sbjct: 312 DKSLITISSSNTLEMHDLLQQMGKDIVCEE--KELGQRSRLWDPKDI 356

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147787212|emb|CAN75767.1| hypothetical protein VITISV_032562 [Vitis vinifera]

 Score =  226 bits (577), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 121/287 (42%), Positives = 176/287 (61%), Gaps = 27/287 (9%)

Query: 48  IDDKLNRGNEISPSLLSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPV 107
           +DD+L RG EISP+L+ AIE S+ S+++FSK YASS WCL ELVKI++     G   +PV
Sbjct: 1   MDDQLRRGQEISPALVKAIEESRFSVIVFSKNYASSTWCLEELVKIIDCTMAMGHAALPV 60

Query: 108 FYLVDPSDVRNQTGTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDSHGISRNAF 167
           FY +DPS VR QTG+F  +F+K EE +KE+++ +  WR+A+ EAAN+SG+DS        
Sbjct: 61  FYNMDPSHVRKQTGSFAQAFAKHEEVYKEQMEKVIKWRVALTEAANISGWDSRA------ 114

Query: 168 GQNHPAAGYLELSNIVIKYAKGIPLALKVLGRYLFGRSEEEWENAIEKLKRIPHMDIQKV 227
                       S   +     + ++ K++G      +   +   +  +     + +  V
Sbjct: 115 ------------SIFALSVLYSVDISNKLIG------TSSCYAEGLVGMDSPLCIGLDNV 156

Query: 228 LKVSYDGL---DDEEQNIFLDIACFFKGQHRDFVMNFQDACGFSAKIGICDLVDKSLVII 284
             V   G+   D++E++IFLDIACF K + +DFV     +CGF   IGI  L+DKSL+I+
Sbjct: 157 RSVGIWGMGVIDNKERDIFLDIACFCKWEDKDFVTEILASCGFFPDIGIRVLIDKSLIIV 216

Query: 285 SNNKITMHDLLQEMGREIVRQESIKDSGKRSRLWHHEDIDQVLSKNT 331
           S+NK+ M+DLLQEMG EIV QES+K   K +RLW HED+   L++NT
Sbjct: 217 SDNKLCMYDLLQEMGWEIVWQESLKYPEKHNRLWIHEDVSDALTRNT 263

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297841683|ref|XP_002888723.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297334564|gb|EFH64982.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  222 bits (566), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 134/318 (42%), Positives = 191/318 (60%), Gaps = 11/318 (3%)

Query: 16  YDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDKLNRGNEISPSLLSAIEGSKISIVI 75
           + VF SFRG+DVR   +S++     RK I+ FID+++ RG  I P L+ AI  SKI+IV+
Sbjct: 75  HHVFASFRGEDVRRKILSYIQQEFQRKGIIPFIDNEIKRGESIGPELIKAIRESKIAIVL 134

Query: 76  FSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSK-LEERF 134
            S+ YASS+WCL+ELV+I+E K K+G  V  VFY VDPS V+  TG FG  F K  + R 
Sbjct: 135 LSRNYASSKWCLDELVEIMECKKKFGLTVFVVFYEVDPSHVKKLTGEFGAVFQKTCKGRT 194

Query: 135 KEKIDMLQTWRIAMREAANLSGFDSHGISRNAFGQNHPAAGYLELSNIVIKYAKGIPLAL 194
           KE+I     WR A  E A ++G+D    SR+   +     G+ +L+  V + A  +PL L
Sbjct: 195 KEEI---WRWRQAFEEVATIAGYD----SRDWENEAAMVDGFEDLAWKVTRLAGRLPLGL 247

Query: 195 KVLGRYLFGRSEEEWENAIEKLKRIPHMDIQKVLKVSYDGLDDEEQNIFLDIACFFKGQH 254
           +V+G  L G S+EEW+  + +L+   + DI  +LK SYD LDDE++++FL IACFF  + 
Sbjct: 248 RVMGSRLKGMSKEEWKAELPRLRVRLNGDIWSILKYSYDALDDEDKDLFLYIACFFNDES 307

Query: 255 RDFVMNFQDACGFS-AKIGICDLVDKSLVIISNNKITMHDLLQEMGREIVRQESIKDSGK 313
            D          FS  + G   LV +SL I       MH+LL ++GREIVR++S  + GK
Sbjct: 308 IDHTFEDTFKNNFSNVQQGFRVLVQRSL-ISEERYQPMHNLLVQLGREIVRKQS-NEPGK 365

Query: 314 RSRLWHHEDIDQVLSKNT 331
           R  L    D+ +VL+ +T
Sbjct: 366 RQFLVDPRDVCEVLTDHT 383

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495270|ref|XP_002276075.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 101/161 (62%), Positives = 129/161 (80%), Gaps = 1/161 (0%)

Query: 172 PAAGYLELSNIVIKYAKGIPLALKVLGRYLFGRSEEEWENAIEKLKRIPHMDIQKVLKVS 231
           P   ++E+S  VI YA+G+PLAL+VLG +LF  ++EEW N ++KLK  P+M IQ+VLKVS
Sbjct: 362 PCDDFMEVSKEVIGYAQGLPLALEVLGSFLFSMTKEEWRNQLDKLKSTPNMKIQEVLKVS 421

Query: 232 YDGLDDEEQNIFLDIACFFKGQHRDFVMNFQDACGFSAKIGICDLVDKSLVIIS-NNKIT 290
           YDGLDD+E+NI LDIACFFKG+ +D+VM   D CGF +  GI  L+DKSLV IS +N+I 
Sbjct: 422 YDGLDDKEKNILLDIACFFKGEDKDYVMEILDGCGFFSLSGIRALIDKSLVTISWSNEIM 481

Query: 291 MHDLLQEMGREIVRQESIKDSGKRSRLWHHEDIDQVLSKNT 331
           MHDL+QEMGREIVRQ+S+++ GKRSRLW HEDI+ VL KNT
Sbjct: 482 MHDLIQEMGREIVRQQSLEEPGKRSRLWFHEDINGVLKKNT 522

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127754|ref|XP_002329169.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870950|gb|EEF08081.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  212 bits (540), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 102/151 (67%), Positives = 121/151 (80%)

Query: 12  PQIKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDKLNRGNEISPSLLSAIEGSKI 71
           PQ KYDVFLSFRG+D R  F+SHL AAL RK+I TFID KLNRG EISPSLL AIE SK+
Sbjct: 11  PQEKYDVFLSFRGEDTRVCFVSHLYAALKRKQISTFIDYKLNRGEEISPSLLKAIEDSKL 70

Query: 72  SIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLE 131
           S+V+FS  YASS+WCL EL KILE K   GQ+V+PVFY VDPS VRNQTG+F D+F++ +
Sbjct: 71  SVVVFSDNYASSKWCLEELAKILECKKVKGQMVIPVFYRVDPSHVRNQTGSFADAFARHD 130

Query: 132 ERFKEKIDMLQTWRIAMREAANLSGFDSHGI 162
           +  KEK++ +  WR AMREAANLSG+DSH I
Sbjct: 131 QLLKEKMEKVLNWRAAMREAANLSGWDSHNI 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537139|ref|XP_002509636.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223549535|gb|EEF51023.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score =  211 bits (537), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 100/167 (59%), Positives = 127/167 (76%), Gaps = 1/167 (0%)

Query: 164 RNAFGQNHPAAGYLELSNIVIKYAKGIPLALKVLGRYLFGRSEEEWENAIEKLKRIPHMD 223
           +  F +      Y  LS++VI+YAKG+PLALKVLG +LFG+S+ EWE+A++KLK+ PH  
Sbjct: 354 QTTFKKKCVPEDYSYLSDLVIEYAKGVPLALKVLGSFLFGKSKTEWESALDKLKKAPHRA 413

Query: 224 IQKVLKVSYDGLDDEEQNIFLDIACFFKGQHRDFVMNFQDACGFSAKIGICDLVDKSLVI 283
            Q VLK+SYDGLD EE+NIFLDIACFF+G+  + V    D CGFS KIG+C LVDKSL+ 
Sbjct: 414 TQNVLKISYDGLDAEEKNIFLDIACFFRGESVEMVTKILDGCGFSTKIGLCLLVDKSLIT 473

Query: 284 ISNNKITMHDLLQEMGREIVRQESIKDSGKRSRLWHHEDIDQVLSKN 330
           I N+K+ MHDLLQEMG+EIV QES K   +R+RLW+HEDI  V S+N
Sbjct: 474 ILNDKVEMHDLLQEMGKEIVLQES-KQPSQRTRLWNHEDILHVFSRN 519

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486073|ref|XP_002272820.2| PREDICTED: TMV resistance protein N-like, partial [Vitis vinifera]

 Score =  211 bits (536), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 96/168 (57%), Positives = 134/168 (79%)

Query: 164 RNAFGQNHPAAGYLELSNIVIKYAKGIPLALKVLGRYLFGRSEEEWENAIEKLKRIPHMD 223
           ++AF    PA  +++L +  + Y KGIPLALK+LGR+L+ RS++EWE+ +EKL+RIP+ +
Sbjct: 367 QHAFKYKPPAGDFVQLCDRALNYTKGIPLALKILGRFLYNRSKKEWESELEKLRRIPNNE 426

Query: 224 IQKVLKVSYDGLDDEEQNIFLDIACFFKGQHRDFVMNFQDACGFSAKIGICDLVDKSLVI 283
           IQ VL++S+DGLDD +++IFLDIACFFKGQ +D+V+    +C F  +IGI +L+DKSLV 
Sbjct: 427 IQDVLRISFDGLDDNQKDIFLDIACFFKGQDKDYVIKLLKSCDFFPEIGIRNLIDKSLVT 486

Query: 284 ISNNKITMHDLLQEMGREIVRQESIKDSGKRSRLWHHEDIDQVLSKNT 331
           IS NK+ MHDL+Q+MG EIVRQESIKD GKRSRLW ++D+  +L+ NT
Sbjct: 487 ISYNKLCMHDLIQKMGWEIVRQESIKDPGKRSRLWVNDDVIDMLTTNT 534

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	332
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.457	0.132	0.541	7.1e-74
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.472	0.121	0.490	1.2e-70
TAIR|locus:2167457	1191	AT5G36930 [Arabidopsis thalian	0.536	0.149	0.435	2.8e-68
TAIR|locus:2136108	1095	AT4G11170 [Arabidopsis thalian	0.448	0.136	0.512	1.9e-61
TAIR|locus:2151491	1123	AT5G46450 [Arabidopsis thalian	0.481	0.142	0.455	4.3e-61
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.454	0.123	0.462	9.2e-60
TAIR|locus:2146243	900	AT5G18360 [Arabidopsis thalian	0.472	0.174	0.453	1.1e-59
TAIR|locus:2147992	1189	AT5G11250 [Arabidopsis thalian	0.427	0.119	0.472	1.7e-59
TAIR|locus:2162439	1008	AT5G22690 [Arabidopsis thalian	0.424	0.139	0.482	2.6e-59
TAIR|locus:2163426	1187	TAO1 "target of AVRB operation	0.493	0.138	0.451	6.7e-59

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 400 (145.9 bits), Expect = 7.1e-74, Sum P(2) = 7.1e-74
 Identities = 85/157 (54%), Positives = 107/157 (68%)

Query:     1 MASSSSSINMNPQIKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDK-LNRGNEIS 59
             MASSSSS   +    YDVFLSFRG+D R  F SHL   L  K I TF DDK L  G  I 
Sbjct:     1 MASSSSSSRWS----YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIP 56

Query:    60 PSLLSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQ 119
               L  AIE S+ +IV+FS+ YA+SRWCLNELVKI+E K ++ Q V+P+FY VDPS VRNQ
Sbjct:    57 GELCKAIEESQFAIVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQ 116

Query:   120 TGTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSG 156
               +F  +F + E ++K+ ++ +Q WRIA+ EAANL G
Sbjct:   117 KESFAKAFEEHETKYKDDVEGIQRWRIALNEAANLKG 153

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 1.2e-70, Sum P(2) = 1.2e-70
 Identities = 77/157 (49%), Positives = 115/157 (73%)

Query:   175 GYLELSNIVIKYAKGIPLALKVLGRYLFGRSEEEWENAIEKLKRIPHMDIQKVLKVSYDG 234
             G+ ELS   + YA G+PLAL+VLG +L+ RS+ EWE+ + +LK  PH DI +VL+VSYDG
Sbjct:   366 GFEELSVQAVNYASGLPLALRVLGSFLYRRSQIEWESTLARLKTYPHSDIMEVLRVSYDG 425

Query:   235 LDDEEQNIFLDIACFFKGQHRDFVMNFQDACGFSAKIGICDLVDKSLVIISNNKITMHDL 294
             LD++E+ IFL I+CF+  +  D+V    D CG++A+IGI  L +KSL++ SN  + +HDL
Sbjct:   426 LDEQEKAIFLYISCFYNMKQVDYVRKLLDLCGYAAEIGITILTEKSLIVESNGCVKIHDL 485

Query:   295 LQEMGREIVRQESIKDSGKRSRLWHHEDIDQVLSKNT 331
             L++MGRE+VRQ+++ +  +R  LW  EDI  +LS+N+
Sbjct:   486 LEQMGRELVRQQAVNNPAQRLLLWDPEDICHLLSENS 522

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2167457 AT5G36930 [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 2.8e-68, Sum P(2) = 2.8e-68
 Identities = 78/179 (43%), Positives = 115/179 (64%)

Query:   154 LSGFDSHGI-SRNAFGQNHPAAGYLELSNIVIKYAKGIPLALKVLGRYLFGRSEEEWENA 212
             L G +S  + S +AF  + P   +L+ S  V+ Y  G+PLA++VLG +L  RS  EWE+ 
Sbjct:   347 LDGDESLELFSWHAFRTSEPPKEFLQHSEEVVTYCAGLPLAVEVLGAFLIERSIREWEST 406

Query:   213 IEKLKRIPHMDIQKVLKVSYDGLDDEEQNIFLDIACFFKGQHRDFVMNFQDACGFSAKIG 272
             ++ LKRIP+ +IQ  L++S++ L  E++++FLDIACFF G    +V    D C     I 
Sbjct:   407 LKLLKRIPNDNIQAKLQISFNALTIEQKDVFLDIACFFIGVDSYYVACILDGCNLYPDIV 466

Query:   273 ICDLVDKSLVIISNNKITMHDLLQEMGREIVRQESIKDSGKRSRLWHHEDIDQVLSKNT 331
             +  L+++ L+ IS N I MHDLL++MGR+IVR+ S K  G+RSRLW H D+  VL K +
Sbjct:   467 LSLLMERCLITISGNNIMMHDLLRDMGRQIVREISPKKCGERSRLWSHNDVVGVLKKKS 525

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2136108 AT4G11170 [Arabidopsis thaliana (taxid:3702)]

 Score = 361 (132.1 bits), Expect = 1.9e-61, Sum P(2) = 1.9e-61
 Identities = 80/156 (51%), Positives = 104/156 (66%)

Query:     1 MASSSSSINMNPQIKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDKLNRGNEISP 60
             MASSSS+       +YDVF SFRG+DVR+NF+SHL      K IVTF DD + R + I  
Sbjct:     1 MASSSSN-----SWRYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDDHIKRSHTIGH 55

Query:    61 SLLSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
              L +AI  SKIS+V+FS+ YASS WCL+EL++I++ K + G  V+PVFY VDPSD+R QT
Sbjct:    56 ELRAAIRESKISVVLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQT 115

Query:   121 GTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSG 156
             G FG SF  LE    +  +    WR A+ +AAN+ G
Sbjct:   116 GKFGMSF--LETCCGKTEERQHNWRRALTDAANILG 149

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0010193 "response to ozone" evidence=IEP

TAIR|locus:2151491 AT5G46450 [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 4.3e-61, Sum P(2) = 4.3e-61
 Identities = 76/167 (45%), Positives = 110/167 (65%)

Query:     1 MASSSSSINMNPQIKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDKLNRGNEISP 60
             MASSSSS   +    YDVF SF G+DVR  F+SH    L RK I+TF D+++ R   I+P
Sbjct:     1 MASSSSS---SRNWSYDVFPSFSGEDVRKTFLSHFLRELERKSIITFKDNEMERSQSIAP 57

Query:    61 SLLSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKY-GQIVVPVFYLVDPSDVRNQ 119
              L+ AI+ S+I++++FSK YASS WCLNEL++I+   NKY GQ V+PVFY +DPS +R Q
Sbjct:    58 ELVEAIKDSRIAVIVFSKNYASSSWCLNELLEIMRC-NKYLGQQVIPVFYYLDPSHLRKQ 116

Query:   120 TGTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDSHGISRNA 166
             +G FG++F K  +   E++     W+ A+ + +N+ G+ S   +  A
Sbjct:   117 SGEFGEAFKKTCQNQTEEVK--NQWKQALTDVSNILGYHSKNCNSEA 161

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 9.2e-60, Sum P(2) = 9.2e-60
 Identities = 73/158 (46%), Positives = 99/158 (62%)

Query:     1 MASSSSSINMNPQIKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDKLNRGNEISP 60
             M SSS S       ++DVFLSFRG D R+NF  HL  AL  + I +FIDD+L RG+ ++ 
Sbjct:     1 MESSSPS-----SAEFDVFLSFRGFDTRNNFTGHLQKALRLRGIDSFIDDRLRRGDNLT- 54

Query:    61 SLLSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
             +L   IE SKI+I++FS  YA+S WCL ELVKILE +N   Q+VVP+FY VD SDV  Q 
Sbjct:    55 ALFDRIEKSKIAIIVFSTNYANSAWCLRELVKILECRNSNQQLVVPIFYKVDKSDVEKQR 114

Query:   121 GTFGDSFSKLEERFKEKI-DMLQTWRIAMREAANLSGF 157
              +F   F   E  F     + + +W+ A+  A+N+ G+
Sbjct:   115 NSFAVPFKLPELTFPGVTPEEISSWKAALASASNILGY 152

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2146243 AT5G18360 [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 1.1e-59, Sum P(2) = 1.1e-59
 Identities = 74/163 (45%), Positives = 102/163 (62%)

Query:     5 SSSINMNP-QIKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDKLNRGNEISPSLL 63
             SSS+++     ++ VF SF GKDVR  F+SHL     RK I TFID+ + R   IS  L+
Sbjct:     4 SSSLSLQSCNWRHHVFPSFSGKDVRRTFLSHLLKEFRRKGIRTFIDNDIKRSQMISSELV 63

Query:    64 SAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTF 123
              AI  S+I++V+ S+ YASS WCLNELV+I     K  Q+++PVFY VDPSDVR +TG F
Sbjct:    64 RAIRESRIAVVVLSRTYASSSWCLNELVEI----KKVSQMIMPVFYEVDPSDVRKRTGEF 119

Query:   124 GDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDSHGISRNA 166
             G +F +  ER  ++ ++ Q WR A+   AN++G  S      A
Sbjct:   120 GKAFEEACERQPDE-EVKQKWREALVYIANIAGESSQNWDNEA 161

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2147992 AT5G11250 [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 1.7e-59, Sum P(2) = 1.7e-59
 Identities = 68/144 (47%), Positives = 96/144 (66%)

Query:    16 YDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDKLNRGNEISPSLLSAIEGSKISIVI 75
             + VF SF G+DVR +F+SH+     R  I  F+D+++ RG  I P LL AI GSKI+I++
Sbjct:    62 HQVFPSFSGEDVRRDFLSHIQMEFQRMGITPFVDNEIKRGESIGPELLRAIRGSKIAIIL 121

Query:    76 FSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFK 135
              S+ YASS+WCL+ELV+I++ + +YGQ V+ +FY VDPSDV+N TG FG  F K     K
Sbjct:   122 LSRNYASSKWCLDELVEIMKCREEYGQTVMAIFYKVDPSDVKNLTGDFGKVFRKTCAG-K 180

Query:   136 EKIDMLQTWRIAMREAANLSGFDS 159
              K D +  WR A  + A ++G+ S
Sbjct:   181 PKKD-IGRWRQAWEKVATVAGYHS 203

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2162439 AT5G22690 [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 2.6e-59, Sum P(2) = 2.6e-59
 Identities = 70/145 (48%), Positives = 94/145 (64%)

Query:    16 YDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDKLNRGNEISPSLLSAIEGSKISIVI 75
             YDVF SF G+DVR  F+SH    L RK I  F D+ + R   + P L  AI  S+I+IV+
Sbjct:    10 YDVFPSFSGEDVRVTFLSHFLKELDRKLISVFKDNDIQRSQSLDPELKLAIRDSRIAIVV 69

Query:    76 FSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFK 135
             FSK YA+S WCL+EL++I++ K ++GQIV+PVFY +DP  VR Q+G FG  F   E   +
Sbjct:    70 FSKNYAASSWCLDELLEIVKCKEEFGQIVIPVFYGLDPCHVRKQSGEFGIVF---ENTCQ 126

Query:   136 EKID-MLQTWRIAMREAANLSGFDS 159
              K D  +Q WR A+ + AN+ GF S
Sbjct:   127 TKTDDEIQKWRRALTDVANILGFHS 151

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 6.7e-59, Sum P(2) = 6.7e-59
 Identities = 75/166 (45%), Positives = 104/166 (62%)

Query:     1 MASSSSSINMNPQIKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDKLNRGNEISP 60
             ++SSS   +++    + VFLSFRG+DVR   +SH+     R  I  FID+++ RG  I P
Sbjct:    25 LSSSSPPSSLSQNWLHPVFLSFRGEDVRKGLLSHIQKEFQRNGITPFIDNEMKRGGSIGP 84

Query:    61 SLLSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
              LL AI GSKI+I++ S+ Y SS+WCL+ELV+I++ + + GQ V+ VFY VDPSDVR Q 
Sbjct:    85 ELLQAIRGSKIAIILLSRNYGSSKWCLDELVEIMKCREELGQTVMTVFYDVDPSDVRKQK 144

Query:   121 GTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDSHGISRNA 166
             G FG  F K      E  +M+Q W+ A+  AAN+ G DS      A
Sbjct:   145 GDFGKVFKKTCVGRPE--EMVQRWKQALTSAANILGEDSRNWENEA 188

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	332
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-41
pfam01582	135	pfam01582, TIR, TIR domain	5e-40
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	1e-37
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-32
PLN03194	187	PLN03194, PLN03194, putative disease resistance pr	3e-13
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	4e-12
pfam13676	102	pfam13676, TIR_2, TIR domain	4e-09

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  153 bits (389), Expect = 2e-41
 Identities = 75/159 (47%), Positives = 102/159 (64%), Gaps = 6/159 (3%)

Query: 1   MASSSSSINMNPQIKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDKLNRGNEISP 60
            +SSSSS N      YDVF SF G+DVR  F+SH    L RK I+ F D+++ R   + P
Sbjct: 2   ASSSSSSRNWV----YDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDP 57

Query: 61  SLLSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
            L  AI  S+I++V+FSK YASS WCLNEL++I+  K + GQ+V+PVFY +DPS VR QT
Sbjct: 58  ELKQAIRDSRIAVVVFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQT 117

Query: 121 GTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDS 159
           G FG++F K  +   E  D    W+ A+ + AN+ G+ S
Sbjct: 118 GDFGEAFEKTCQNKTE--DEKIQWKQALTDVANILGYHS 154

syringae 6; Provisional. Length = 1153

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score =  137 bits (346), Expect = 5e-40
 Identities = 62/135 (45%), Positives = 86/135 (63%), Gaps = 3/135 (2%)

Query: 18  VFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDK-LNRGNEISPSLLSAIEGSKISIVIF 76
           VF+SF GKD R  F+SHL   L  K I   IDD+    G  I  +L  AIE S+ +IVIF
Sbjct: 1   VFVSFSGKDDRDTFVSHLLKELEEKGIKLCIDDRDELPGESILENLFEAIEKSRRAIVIF 60

Query: 77  SKGYASSRWCLNELVKILESKNKYG--QIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERF 134
           S  YASS WCL+ELV+I++   + G  ++++P+FY VDPSDVR Q+G FG +F K  +  
Sbjct: 61  SSNYASSEWCLDELVEIVKCALEGGGKKVILPIFYKVDPSDVRPQSGKFGKAFLKTLKWS 120

Query: 135 KEKIDMLQTWRIAMR 149
            +K D ++ W+ A+ 
Sbjct: 121 GDKEDKIRFWKKALY 135

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score =  130 bits (330), Expect = 1e-37
 Identities = 59/142 (41%), Positives = 83/142 (58%), Gaps = 4/142 (2%)

Query: 15  KYDVFLSFRGK-DVRHNFISHLNAALCRKKIVTFIDDKLNRGNEISPSLLSAIEGSKISI 73
           +YDVF+S+ GK DVR+ F+SHL   L    +  FIDD    G ++   +  AIE S+I+I
Sbjct: 1   EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPGGGDLE-EIDEAIEKSRIAI 59

Query: 74  VIFSKGYASSRWCLNELVKILESKNKYGQI-VVPVFYLVDPSDVRNQTGTFGDSFSKLEE 132
           V+ S  YA S WCL+ELV  LE+  + G + V+P+FY V PSDVR Q G F   F K   
Sbjct: 60  VVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVFKKNYL 119

Query: 133 RFKEKIDMLQTWRIAMREAANL 154
           ++ E  +  Q W+ A+    + 
Sbjct: 120 KWPED-EKEQFWKKALYAVPSK 140

Length = 140

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  127 bits (321), Expect = 2e-32
 Identities = 69/169 (40%), Positives = 103/169 (60%), Gaps = 2/169 (1%)

Query: 164 RNAFGQNHPAAGYLELSNIVIKYAKGIPLALKVLGRYLFGRSEEEWENAIEKLKRIPHMD 223
           R+AF +N P  G++EL++ V   A  +PL L VLG YL GR +E+W + + +L+      
Sbjct: 362 RSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGK 421

Query: 224 IQKVLKVSYDGLDD-EEQNIFLDIACFFKGQHRDFVMNFQDACGFSAKIGICDLVDKSLV 282
           I+K L+VSYDGL++ +++ IF  IAC F G+  + +            IG+ +LVDKSL+
Sbjct: 422 IEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLI 481

Query: 283 IISNNKITMHDLLQEMGREIVRQESIKDSGKRSRLWHHEDIDQVLSKNT 331
            +  + + MH LLQEMG+EIVR +S  + G+R  L   +DI  VL  NT
Sbjct: 482 HVREDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNT 529

syringae 6; Provisional. Length = 1153

>gnl|CDD|215626 PLN03194, PLN03194, putative disease resistance protein; Provisional

 Score = 67.2 bits (164), Expect = 3e-13
 Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 19/152 (12%)

Query: 11  NPQIKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDK-LNRGNEISPSLLSAIEGS 69
           +     DVF++ RG D +    + L   L R  +  F+D+K +  G+++   + SAI   
Sbjct: 22  SSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNC 81

Query: 70  KISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSK 129
           K+ + +FS  Y  S +CL+EL  I+ESK +    V+P+F  V PS +R            
Sbjct: 82  KVGVAVFSPRYCESYFCLHELALIMESKKR----VIPIFCDVKPSQLR------------ 125

Query: 130 LEERFKEKIDMLQTWRIAMREAANLSG--FDS 159
           + +      + ++ +  A+ EA    G  FDS
Sbjct: 126 VVDNGTCPDEEIRRFNWALEEAKYTVGLTFDS 157

Length = 187

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 9/114 (7%)

Query: 163 SRNAFGQNHPAAGYLE-LSNIVIKYAKGIPLALKVLGRYLFGRSE-EEWENAIEKLKR-I 219
           S   F +  P    LE ++  +++  KG+PLALKVLG  L  +S  +EWE+ +E+L   +
Sbjct: 166 SNKVFEKELPPCPELEEVAKEIVEKCKGLPLALKVLGGLLAFKSTVQEWEHVLEQLNNEL 225

Query: 220 PHMDIQK----VLKVSYDGLDDEEQNIFLDIACFFKGQ--HRDFVMNFQDACGF 267
              D       +L +SYD L    +  FL +A F +     ++ ++    A GF
Sbjct: 226 AGRDGLNEVLSILSLSYDNLPMHLKRCFLYLALFPEDYNIRKEQLIKLWIAEGF 279

Length = 285

>gnl|CDD|222311 pfam13676, TIR_2, TIR domain

 Score = 53.0 bits (128), Expect = 4e-09
 Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 8/99 (8%)

Query: 18  VFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDKLNRGNEISPSLLSAIEGSKISIVIFS 77
           VF+S+   D    +   L  AL    I  ++D  +  G +    +  A+  + + +V+ S
Sbjct: 1   VFISYASADRE--WAEWLADALEAAGIRVWLDWDIPPGEDWRDEIEEALRSADVVLVLLS 58

Query: 78  KGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDV 116
             Y +S WC  E    LE     G+ ++PV   ++  ++
Sbjct: 59  PAYLASPWCRAEWGAALER----GKRLIPV--RLEDCEL 91

This is a family of bacterial Toll-like receptors. Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	332
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PLN03194	187	putative disease resistance protein; Provisional	100.0
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.93
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	99.89
smart00255	140	TIR Toll - interleukin 1 - resistance.	99.86
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	99.61
PF13676	102	TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_	99.57
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.46
PF08937	130	DUF1863: MTH538 TIR-like domain (DUF1863); InterPr	98.17
PRK04841	903	transcriptional regulator MalT; Provisional	97.2
PF08357	150	SEFIR: SEFIR domain; InterPro: IPR013568 This doma	97.0
PF10137	125	TIR-like: Predicted nucleotide-binding protein con	94.97
COG4916	329	Uncharacterized protein containing a TIR (Toll-Int	86.45
PF13271	83	DUF4062: Domain of unknown function (DUF4062)	85.72
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	84.58
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	84.09

>PLN03210 Resistant to P

Probab=100.00  E-value=7.4e-72  Score=596.88  Aligned_cols=325  Identities=44%  Similarity=0.761  Sum_probs=304.9

Q ss_pred             CCCCCCCCCCCCCcceeEEEeccccccccchHHHHHHHHhcCCCeeeecCCCCCCCCchHHHHHHhhhcceEEEEeecCC
Q 037752            1 MASSSSSINMNPQIKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDKLNRGNEISPSLLSAIEGSKISIVIFSKGY   80 (332)
Q Consensus         1 m~~~~s~~~~~~~~~ydvFis~~~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~g~~i~~~i~~~i~~Sr~~i~v~S~~y   80 (332)
                      |++||||   ++.++|||||||||+|+|.+|++||+++|.++||++|+|+++++|+.|.+++.+||++||++|||||+||
T Consensus         1 ~~~~~~~---~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~~~~~g~~~~~~l~~~i~~s~~~ivv~s~~y   77 (1153)
T PLN03210          1 MASSSSS---SRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDNEIERSQSLDPELKQAIRDSRIAVVVFSKNY   77 (1153)
T ss_pred             CCCCCCC---CCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccCCccCCCcccHHHHHHHHhCeEEEEEecCCc
Confidence            6666555   4679999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhhHHHHHHHHHhhhhcCCeeEeeeeecCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHHhhhcccccccC
Q 037752           81 ASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDSH  160 (332)
Q Consensus        81 ~~S~wc~~El~~~~~~~~~~~~~vlpVfy~v~p~dv~~q~g~f~~~f~~~~~~~~~~~e~v~~W~~aL~~v~~~~g~~~~  160 (332)
                      ++|.||++||++|++|+++.+++|+||||+|+|+|||+|+|.||++|.++.+..  ..+++++|+.||++|++++||++.
T Consensus        78 a~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~~  155 (1153)
T PLN03210         78 ASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHSQ  155 (1153)
T ss_pred             ccchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCceecC
Confidence            999999999999999999999999999999999999999999999999876653  345799999999999999999865


Q ss_pred             C-------------------------------------------------------------------------------
Q 037752          161 G-------------------------------------------------------------------------------  161 (332)
Q Consensus       161 ~-------------------------------------------------------------------------------  161 (332)
                      .                                                                               
T Consensus       156 ~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F  235 (1153)
T PLN03210        156 NWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQF  235 (1153)
T ss_pred             CCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcC
Confidence            3                                                                               


Q ss_pred             --------------------------------------------------------------------------------
Q 037752          162 --------------------------------------------------------------------------------  161 (332)
Q Consensus       162 --------------------------------------------------------------------------------  161 (332)
                                                                                                      
T Consensus       236 ~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~  315 (1153)
T PLN03210        236 QSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALA  315 (1153)
T ss_pred             CeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHH
Confidence                                                                                            


Q ss_pred             --------------------------------------------ccccccCCCCCCcchHHHHHHHHHHhcCCchHHHHh
Q 037752          162 --------------------------------------------ISRNAFGQNHPAAGYLELSNIVIKYAKGIPLALKVL  197 (332)
Q Consensus       162 --------------------------------------------F~~~AF~~~~~~~~~~~l~~~iv~~c~GlPLAl~~i  197 (332)
                                                                  |+++||++..+++++++++.+|+++|+||||||+++
T Consensus       316 ~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vl  395 (1153)
T PLN03210        316 GQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVL  395 (1153)
T ss_pred             hhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHH
Confidence                                                        999999988777889999999999999999999999


Q ss_pred             hhhhcCCCHHHHHHHHHHHhcCCCCchHHHHHHhhcCCCH-HHHHHHHhhcccCCCCCHHHHHHHHHHcCCChhHHHHHH
Q 037752          198 GRYLFGRSEEEWENAIEKLKRIPHMDIQKVLKVSYDGLDD-EEQNIFLDIACFFKGQHRDFVMNFQDACGFSAKIGICDL  276 (332)
Q Consensus       198 g~~L~~k~~~~w~~~l~~l~~~~~~~i~~~L~~Syd~L~~-~~k~~fl~~a~fp~~~~~~~l~~lw~~~g~~~~~~l~~L  276 (332)
                      |+.|++++.++|+.++++|+..++.+|..+|++||++|++ .+|.||++|||||.+.+.+.+..++..+++.+..+++.|
T Consensus       396 gs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L  475 (1153)
T PLN03210        396 GSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNL  475 (1153)
T ss_pred             HHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHH
Confidence            9999999999999999999988888899999999999987 699999999999999999988888888899899999999


Q ss_pred             hhCCcceeeCCeEEecHHHHHHHHHHHhhcCcCCCCCcccccCcchHHHHHhhcC
Q 037752          277 VDKSLVIISNNKITMHDLLQEMGREIVRQESIKDSGKRSRLWHHEDIDQVLSKNT  331 (332)
Q Consensus       277 v~~sLl~~~~~~~~mHdlv~~~a~~i~~~e~~~~~~~~~rl~~~~~~~~~l~~~~  331 (332)
                      +++|||++..++++||||+|+||++++++++ .+|++|+|||+++||++||.+++
T Consensus       476 ~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~  529 (1153)
T PLN03210        476 VDKSLIHVREDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNT  529 (1153)
T ss_pred             HhcCCEEEcCCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCc
Confidence            9999999888899999999999999999998 78999999999999999999875

syringae 6; Provisional

>PLN03194 putative disease resistance protein; Provisional

Probab=100.00  E-value=1.5e-41  Score=284.60  Aligned_cols=130  Identities=32%  Similarity=0.541  Sum_probs=121.1

Q ss_pred             CcceeEEEeccccccccchHHHHHHHHhcCCCeeeecC-CCCCCCCchHHHHHHhhhcceEEEEeecCCcCChhhHHHHH
Q 037752           13 QIKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDD-KLNRGNEISPSLLSAIEGSKISIVIFSKGYASSRWCLNELV   91 (332)
Q Consensus        13 ~~~ydvFis~~~~D~~~~f~~~L~~~L~~~gi~~f~d~-~~~~g~~i~~~i~~~i~~Sr~~i~v~S~~y~~S~wc~~El~   91 (332)
                      ..+|||||||+|+|+|.+|++||+.+|+++||++|+|+ ++++|+.|.+.|.+||++|+++|+|||+||++|.||++||+
T Consensus        24 ~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WCLdEL~  103 (187)
T PLN03194         24 AKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFCLHELA  103 (187)
T ss_pred             CCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhHHHHHH
Confidence            56799999999999999999999999999999999999 89999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhcCCeeEeeeeecCCCcccccc-cchhhhHHHHHHhhhhhhhHHHHHHHHHHhhhccccccc
Q 037752           92 KILESKNKYGQIVVPVFYLVDPSDVRNQT-GTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDS  159 (332)
Q Consensus        92 ~~~~~~~~~~~~vlpVfy~v~p~dv~~q~-g~f~~~f~~~~~~~~~~~e~v~~W~~aL~~v~~~~g~~~  159 (332)
                      +|+++.    ..|+||||+|+|+||++|+ |.             .+.+++++|+.||++|+++.|+++
T Consensus       104 ~I~e~~----~~ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~va~l~G~~~  155 (187)
T PLN03194        104 LIMESK----KRVIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEAKYTVGLTF  155 (187)
T ss_pred             HHHHcC----CEEEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHHHhccccccC
Confidence            999975    4899999999999999973 32             134679999999999999999876

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.93  E-value=2.7e-26  Score=237.07  Aligned_cols=148  Identities=30%  Similarity=0.425  Sum_probs=130.2

Q ss_pred             cccccCCccccccCCC-CCCcchHHHHHHHHHHhcCCchHHHHhhhhhcCC-CHHHHHHHHHHHhcC-----C--CCchH
Q 037752          155 SGFDSHGISRNAFGQN-HPAAGYLELSNIVIKYAKGIPLALKVLGRYLFGR-SEEEWENAIEKLKRI-----P--HMDIQ  225 (332)
Q Consensus       155 ~g~~~~~F~~~AF~~~-~~~~~~~~l~~~iv~~c~GlPLAl~~ig~~L~~k-~~~~w~~~l~~l~~~-----~--~~~i~  225 (332)
                      ..|++  |++.||... ...+.++++|++++++|+|||||++++|+.|+.| +..+|+.+.+.+.+.     +  ...|.
T Consensus       321 eaW~L--F~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~  398 (889)
T KOG4658|consen  321 EAWDL--FQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESIL  398 (889)
T ss_pred             ccHHH--HHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhH
Confidence            34666  999999864 4445699999999999999999999999999996 677999999988764     1  25688


Q ss_pred             HHHHHhhcCCCHHHHHHHHhhcccCCC--CCHHHHHHHHHHcCCChh------------HHHHHHhhCCcceeeC-----
Q 037752          226 KVLKVSYDGLDDEEQNIFLDIACFFKG--QHRDFVMNFQDACGFSAK------------IGICDLVDKSLVIISN-----  286 (332)
Q Consensus       226 ~~L~~Syd~L~~~~k~~fl~~a~fp~~--~~~~~l~~lw~~~g~~~~------------~~l~~Lv~~sLl~~~~-----  286 (332)
                      .+|++|||.||++.|.||+|||+||+|  ++++.|+.+|+++||+..            .++.+|+++||++...     
T Consensus       399 ~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~  478 (889)
T KOG4658|consen  399 PILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRK  478 (889)
T ss_pred             HhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccce
Confidence            999999999999999999999999999  789999999999998633            3699999999999763     


Q ss_pred             CeEEecHHHHHHHHHHHh
Q 037752          287 NKITMHDLLQEMGREIVR  304 (332)
Q Consensus       287 ~~~~mHdlv~~~a~~i~~  304 (332)
                      ..++|||+||+||..++.
T Consensus       479 ~~~kmHDvvRe~al~ias  496 (889)
T KOG4658|consen  479 ETVKMHDVVREMALWIAS  496 (889)
T ss_pred             eEEEeeHHHHHHHHHHhc
Confidence            578999999999999998

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=99.89  E-value=1.9e-24  Score=178.52  Aligned_cols=132  Identities=36%  Similarity=0.547  Sum_probs=115.2

Q ss_pred             EEEeccccccccchHHHHHHHHhcC--CCeeeecC-CCCCCCCchHHHHHHhhhcceEEEEeecCCcCChhhHHHHHHHH
Q 037752           18 VFLSFRGKDVRHNFISHLNAALCRK--KIVTFIDD-KLNRGNEISPSLLSAIEGSKISIVIFSKGYASSRWCLNELVKIL   94 (332)
Q Consensus        18 vFis~~~~D~~~~f~~~L~~~L~~~--gi~~f~d~-~~~~g~~i~~~i~~~i~~Sr~~i~v~S~~y~~S~wc~~El~~~~   94 (332)
                      |||||++.+.+..|+.+|..+|+++  |+++|+++ |+.+|..+.+++.++|++||++|+|+|++|+.|.||+.||..++
T Consensus         1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~   80 (141)
T PF01582_consen    1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL   80 (141)
T ss_dssp             EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred             cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence            8999999555677999999999999  99999998 99999999999999999999999999999999999999999999


Q ss_pred             HhhhhcC--CeeEeeeeecCCCccc-ccccchhhhHHHHHHhhhhh--hhHHHHHHHHHH
Q 037752           95 ESKNKYG--QIVVPVFYLVDPSDVR-NQTGTFGDSFSKLEERFKEK--IDMLQTWRIAMR  149 (332)
Q Consensus        95 ~~~~~~~--~~vlpVfy~v~p~dv~-~q~g~f~~~f~~~~~~~~~~--~e~v~~W~~aL~  149 (332)
                      ++....+  .+|+||||++.++++. .+++.|+..|....+....+  ..+...|+.++.
T Consensus        81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~  140 (141)
T PF01582_consen   81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY  140 (141)
T ss_dssp             HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred             hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence            9996644  8999999999999999 78999998888776665544  456788998764

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=99.86  E-value=2.8e-21  Score=159.00  Aligned_cols=137  Identities=41%  Similarity=0.656  Sum_probs=115.2

Q ss_pred             ceeEEEeccc-cccccchHHHHHHHHhcCCCeeeecCCCCCCCCchHHHHHHhhhcceEEEEeecCCcCChhhHHHHHHH
Q 037752           15 KYDVFLSFRG-KDVRHNFISHLNAALCRKKIVTFIDDKLNRGNEISPSLLSAIEGSKISIVIFSKGYASSRWCLNELVKI   93 (332)
Q Consensus        15 ~ydvFis~~~-~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~g~~i~~~i~~~i~~Sr~~i~v~S~~y~~S~wc~~El~~~   93 (332)
                      +|||||||++ +++...|+.+|..+|...|+.+|.|+... |.....+|.++|++|++.|+|+|++|..|.||..|+..+
T Consensus         1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~-~~~~~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~a   79 (140)
T smart00255        1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEP-GGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVAA   79 (140)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCccc-ccchHHHHHHHHHHCcEEEEEECcccccChhHHHHHHHH
Confidence            5999999999 45668899999999999999999987433 333334999999999999999999999999999999999


Q ss_pred             HHhhhh-cCCeeEeeeeecCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHHhhhc
Q 037752           94 LESKNK-YGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEKIDMLQTWRIAMREAAN  153 (332)
Q Consensus        94 ~~~~~~-~~~~vlpVfy~v~p~dv~~q~g~f~~~f~~~~~~~~~~~e~v~~W~~aL~~v~~  153 (332)
                      .++... ....|+||+++..|.++..+.+.++..+..+...+.++... ..|+.++..+++
T Consensus        80 ~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~~  139 (140)
T smart00255       80 LENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVPS  139 (140)
T ss_pred             HHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhcc
Confidence            998854 66899999999889889999999999988775555544322 689998887764

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=99.61  E-value=2.6e-16  Score=144.67  Aligned_cols=109  Identities=28%  Similarity=0.499  Sum_probs=89.0

Q ss_pred             ccccccCCC-CCCcchHHHHHHHHHHhcCCchHHHHhhhhhcCC-CHHHHHHHHHHHhcCC------CCchHHHHHHhhc
Q 037752          162 ISRNAFGQN-HPAAGYLELSNIVIKYAKGIPLALKVLGRYLFGR-SEEEWENAIEKLKRIP------HMDIQKVLKVSYD  233 (332)
Q Consensus       162 F~~~AF~~~-~~~~~~~~l~~~iv~~c~GlPLAl~~ig~~L~~k-~~~~w~~~l~~l~~~~------~~~i~~~L~~Syd  233 (332)
                      |+..++... ...+.+.+++++|+++|+|+||||+++|+.|+.+ +..+|+.+++++....      ...+..++.+||+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~  245 (287)
T PF00931_consen  166 FKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYD  245 (287)
T ss_dssp             HHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechh
Confidence            666676655 3455678899999999999999999999999653 6788999998876632      3568999999999


Q ss_pred             CCCHHHHHHHHhhcccCCC--CCHHHHHHHHHHcCCChh
Q 037752          234 GLDDEEQNIFLDIACFFKG--QHRDFVMNFQDACGFSAK  270 (332)
Q Consensus       234 ~L~~~~k~~fl~~a~fp~~--~~~~~l~~lw~~~g~~~~  270 (332)
                      .||++.|+||++||+||.+  ++.+.++++|.++|++..
T Consensus       246 ~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~  284 (287)
T PF00931_consen  246 SLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS  284 (287)
T ss_dssp             SSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred             cCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence            9999999999999999988  679999999999998754

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A

Probab=99.57  E-value=1.1e-15  Score=118.95  Aligned_cols=87  Identities=31%  Similarity=0.508  Sum_probs=75.1

Q ss_pred             EEEeccccccccchHHHHHHHHhcCCCeeeecCCCCCCCCchHHHHHHhhhcceEEEEeecCCcCChhhHHHHHHHHHhh
Q 037752           18 VFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDKLNRGNEISPSLLSAIEGSKISIVIFSKGYASSRWCLNELVKILESK   97 (332)
Q Consensus        18 vFis~~~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~g~~i~~~i~~~i~~Sr~~i~v~S~~y~~S~wc~~El~~~~~~~   97 (332)
                      |||||+++|  ..++..|...|++.|+++|.|.++..|+.+.+.+.++|++|+..|+++|++|..|.||..|+..+.+  
T Consensus         1 VFIS~~~~D--~~~a~~l~~~L~~~g~~v~~d~~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~--   76 (102)
T PF13676_consen    1 VFISYSSED--REFAERLAERLESAGIRVFLDRDIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK--   76 (102)
T ss_dssp             EEEEEEGGG--CCCHHHHHHHHHHTT--EE-GGEE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC--
T ss_pred             eEEEecCCc--HHHHHHHHHHHhhcCCEEEEEEeCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH--
Confidence            899999999  6699999999999999999999899999999999999999999999999999999999999988733  


Q ss_pred             hhcCCeeEeeeee
Q 037752           98 NKYGQIVVPVFYL  110 (332)
Q Consensus        98 ~~~~~~vlpVfy~  110 (332)
                        .+..|+||..+
T Consensus        77 --~~~~iipv~~~   87 (102)
T PF13676_consen   77 --RGKPIIPVRLD   87 (102)
T ss_dssp             --TSESEEEEECS
T ss_pred             --CCCEEEEEEEC
Confidence              44589999844

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.46  E-value=7e-07  Score=84.65  Aligned_cols=94  Identities=27%  Similarity=0.409  Sum_probs=76.3

Q ss_pred             CCCcceeEEEeccccccccchHHHHHHHHhcCCCeeeecC-CCCCCCCchHHHHHHhhhcceEEEEeecCCcC----C--
Q 037752           11 NPQIKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDD-KLNRGNEISPSLLSAIEGSKISIVIFSKGYAS----S--   83 (332)
Q Consensus        11 ~~~~~ydvFis~~~~D~~~~f~~~L~~~L~~~gi~~f~d~-~~~~g~~i~~~i~~~i~~Sr~~i~v~S~~y~~----S--   83 (332)
                      +...+.|||||||... ....++-+..-|+-.|+++|+|- .+..|.. .+.+.+.|+..+.+|.|+|||...    .  
T Consensus       608 ~~skq~DVFISYRRst-GnQLASLiKV~LQL~GyrVFIDVdKL~AGKF-dssLlkni~aAkhFiLVLtP~sLDr~lnD~n  685 (832)
T KOG3678|consen  608 MLSKQIDVFISYRRST-GNQLASLIKVLLQLRGYRVFIDVDKLYAGKF-DSSLLKNIQAAKHFILVLTPNSLDRLLNDDN  685 (832)
T ss_pred             cccCCcceEEEeeccc-cHHHHHHHHHHHHhcCceEEEehhhhhcccc-cHHHHHHHHhhheeEEEeCcchHHHHhcccc
Confidence            4457899999998764 44588888888999999999996 7888874 578999999999999999998643    2  


Q ss_pred             --hhhHHHHHHHHHhhhhcCCeeEeeeee
Q 037752           84 --RWCLNELVKILESKNKYGQIVVPVFYL  110 (332)
Q Consensus        84 --~wc~~El~~~~~~~~~~~~~vlpVfy~  110 (332)
                        .|.-.||.-+.+|+    +.|+|||..
T Consensus       686 CeDWVHKEl~~Afe~~----KNIiPI~D~  710 (832)
T KOG3678|consen  686 CEDWVHKELKCAFEHQ----KNIIPIFDT  710 (832)
T ss_pred             HHHHHHHHHHHHHHhc----CCeeeeecc
Confidence              46667877777776    479999975

>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments

Probab=98.17  E-value=3.7e-06  Score=68.23  Aligned_cols=88  Identities=23%  Similarity=0.377  Sum_probs=46.0

Q ss_pred             eeEEEeccccccccchHHHHHHHHhcC-------CCee-ee---------cC-CCCCCCCchHHHHHHhhhcceEEEEee
Q 037752           16 YDVFLSFRGKDVRHNFISHLNAALCRK-------KIVT-FI---------DD-KLNRGNEISPSLLSAIEGSKISIVIFS   77 (332)
Q Consensus        16 ydvFis~~~~D~~~~f~~~L~~~L~~~-------gi~~-f~---------d~-~~~~g~~i~~~i~~~i~~Sr~~i~v~S   77 (332)
                      |.|||||++.|.. .....|...+...       .+.. |.         +. +....+.|...|.+.|..|.+.||+.+
T Consensus         1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig   79 (130)
T PF08937_consen    1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG   79 (130)
T ss_dssp             ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred             CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence            6799999999943 2666676666653       2211 11         11 222344788899999999999999999


Q ss_pred             cCCcCChhhHHHHHHHHHhhhhcCCeeEeee
Q 037752           78 KGYASSRWCLNELVKILESKNKYGQIVVPVF  108 (332)
Q Consensus        78 ~~y~~S~wc~~El~~~~~~~~~~~~~vlpVf  108 (332)
                      ++...|.|+..|+..+++.    +..|+.|-
T Consensus        80 ~~T~~s~wV~~EI~~A~~~----~~~Ii~V~  106 (130)
T PF08937_consen   80 PNTAKSKWVNWEIEYALKK----GKPIIGVY  106 (130)
T ss_dssp             TT----HHHHHHHHHHTTT-------EEEEE
T ss_pred             CCcccCcHHHHHHHHHHHC----CCCEEEEE
Confidence            9999999999999987773    45666664

The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.20  E-value=0.0028  Score=67.41  Aligned_cols=125  Identities=14%  Similarity=0.191  Sum_probs=86.7

Q ss_pred             HHHHHHHHHhcCCchHHHHhhhhhcCCCHHHHHHHHHHHhcCCCCchHHHHHHh-hcCCCHHHHHHHHhhcccCCCCCHH
Q 037752          178 ELSNIVIKYAKGIPLALKVLGRYLFGRSEEEWENAIEKLKRIPHMDIQKVLKVS-YDGLDDEEQNIFLDIACFFKGQHRD  256 (332)
Q Consensus       178 ~l~~~iv~~c~GlPLAl~~ig~~L~~k~~~~w~~~l~~l~~~~~~~i~~~L~~S-yd~L~~~~k~~fl~~a~fp~~~~~~  256 (332)
                      +...++.+.|+|.|+++..++..+...+.. .......+...+...+...|.-. ++.||++.+..++.+|+++ .++.+
T Consensus       206 ~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~  283 (903)
T PRK04841        206 AESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDA  283 (903)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHH
Confidence            446789999999999999998877543210 11112222222234566655444 8899999999999999986 67766


Q ss_pred             HHHHHHHHcCCChhHHHHHHhhCCcceee----CCeEEecHHHHHHHHHHHhhc
Q 037752          257 FVMNFQDACGFSAKIGICDLVDKSLVIIS----NNKITMHDLLQEMGREIVRQE  306 (332)
Q Consensus       257 ~l~~lw~~~g~~~~~~l~~Lv~~sLl~~~----~~~~~mHdlv~~~a~~i~~~e  306 (332)
                      .+..+....  .....++.|.+.+|+...    ...|++|+|++++.++-...+
T Consensus       284 l~~~l~~~~--~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~  335 (903)
T PRK04841        284 LIVRVTGEE--NGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWE  335 (903)
T ss_pred             HHHHHcCCC--cHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence            555555321  346689999999997532    237999999999998876444

>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e

Probab=97.00  E-value=0.0047  Score=51.08  Aligned_cols=62  Identities=18%  Similarity=0.285  Sum_probs=50.0

Q ss_pred             eEEEecccccc-ccchHHHHHHHHhcC-CCeeeecC-CCCC--CCCchHHHHHHhhhcceEEEEeec
Q 037752           17 DVFLSFRGKDV-RHNFISHLNAALCRK-KIVTFIDD-KLNR--GNEISPSLLSAIEGSKISIVIFSK   78 (332)
Q Consensus        17 dvFis~~~~D~-~~~f~~~L~~~L~~~-gi~~f~d~-~~~~--g~~i~~~i~~~i~~Sr~~i~v~S~   78 (332)
                      -|||||+.... ....|..|...|++. |+.+.+|. +...  +.....=+.+.++++.+.|+|.|+
T Consensus         2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~   68 (150)
T PF08357_consen    2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSP   68 (150)
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEecc
Confidence            39999988553 235689999999999 99999997 6532  545566778889999999999994

g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].

>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins

Probab=94.97  E-value=0.081  Score=42.44  Aligned_cols=59  Identities=22%  Similarity=0.296  Sum_probs=48.6

Q ss_pred             EEEeccccccccchHHHHHHHHhcCCCeeeec-CCCCCCCCchHHHHHHhhhcceEEEEeecC
Q 037752           18 VFLSFRGKDVRHNFISHLNAALCRKKIVTFID-DKLNRGNEISPSLLSAIEGSKISIVIFSKG   79 (332)
Q Consensus        18 vFis~~~~D~~~~f~~~L~~~L~~~gi~~f~d-~~~~~g~~i~~~i~~~i~~Sr~~i~v~S~~   79 (332)
                      |||.|+ .|  ......+...|+..|+.+.+= .....|..+.+.+.+.+.++..+|++++|+
T Consensus         2 VFIvhg-~~--~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpD   61 (125)
T PF10137_consen    2 VFIVHG-RD--LAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPD   61 (125)
T ss_pred             EEEEeC-CC--HHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEccc
Confidence            899986 66  357778888888778776553 356889999999999999999999999984

Their exact function has not, as yet, been defined.

>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]

Probab=86.45  E-value=0.79  Score=40.89  Aligned_cols=98  Identities=18%  Similarity=0.166  Sum_probs=65.3

Q ss_pred             CCCcceeEEEeccccccccchHHHHHHHHh--cCCCeeeecCC----CCCCCCchHHHHHHhh--hcceEEEEeecCCcC
Q 037752           11 NPQIKYDVFLSFRGKDVRHNFISHLNAALC--RKKIVTFIDDK----LNRGNEISPSLLSAIE--GSKISIVIFSKGYAS   82 (332)
Q Consensus        11 ~~~~~ydvFis~~~~D~~~~f~~~L~~~L~--~~gi~~f~d~~----~~~g~~i~~~i~~~i~--~Sr~~i~v~S~~y~~   82 (332)
                      ...+.||+=+||.|+-  ...|+....+++  .-.+..|.|.+    +-+|+ + ..++.-+.  .|++.+|...+||..
T Consensus       173 ~~~~~~DiG~SFaGEA--R~LVEqV~~E~~~~~~p~~~FYD~~~~~~L~~~s-L-~~~L~~~Y~~rC~~~~VF~~~~Y~~  248 (329)
T COG4916         173 SSEKPVDSGISFAGEA--RNLVEQVQTEHSGLDIPTRRFYDLLVAHPLYPGS-L-VSTLDPGYDIRCVVTTVFNTGSYIC  248 (329)
T ss_pred             ccccccceeeEeehhh--hhHHHHHHHhhhcccCCceeeeechhhccccCcc-H-HHhcccccCceEEEEEEEeCCceEE
Confidence            3467899999999997  569999999998  33455677742    33443 1 23333333  677788888999999


Q ss_pred             ChhhHHHHHHHHHhhhhcCCeeEeeeee-cCCC
Q 037752           83 SRWCLNELVKILESKNKYGQIVVPVFYL-VDPS  114 (332)
Q Consensus        83 S~wc~~El~~~~~~~~~~~~~vlpVfy~-v~p~  114 (332)
                      ..||..|...+-+-.  .-+...||.|. ++.+
T Consensus       249 K~~c~~E~~~~r~~~--~~d~~~rI~~~~~d~~  279 (329)
T COG4916         249 KSTCHIEGLEGRLNP--ILDTGFRIKYLYADNI  279 (329)
T ss_pred             eeeeccchhhccccc--cccccceEEEEecCCc
Confidence            999999876654322  12345566554 4444

>PF13271 DUF4062: Domain of unknown function (DUF4062)

Probab=85.72  E-value=2.8  Score=30.77  Aligned_cols=65  Identities=20%  Similarity=0.177  Sum_probs=46.6

Q ss_pred             EEEeccccccccchHHHHHHHHhcCCCeeeecCCC-CCCCCchHHHHHHhhhcceEEEEeecCCcCC
Q 037752           18 VFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDKL-NRGNEISPSLLSAIEGSKISIVIFSKGYASS   83 (332)
Q Consensus        18 vFis~~~~D~~~~f~~~L~~~L~~~gi~~f~d~~~-~~g~~i~~~i~~~i~~Sr~~i~v~S~~y~~S   83 (332)
                      ||||-.-.|-.. --..|.+.+.+.|..+..-+.+ ..+....+.+.+.|.+|++.|.++-.+|-..
T Consensus         2 VFiSSt~~Dl~~-eR~~l~~~i~~~~~~~~~~e~~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG~~   67 (83)
T PF13271_consen    2 VFISSTFRDLKE-ERDALIEAIRRLGCEPVGMEFFPASDQSPLEICLKEVDECDIFILILGNRYGSV   67 (83)
T ss_pred             EEEecChhhHHH-HHHHHHHHHHHCCCeeeeeeeecCCCCCHHHHHHHHHhhCCEEEEeeccccCCC
Confidence            899977777432 4467777777777665332222 2356666788999999999999999998654

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=84.58  E-value=0.54  Score=44.13  Aligned_cols=102  Identities=16%  Similarity=0.083  Sum_probs=62.6

Q ss_pred             HHHHHHHHHhcCCchHHHHhhhhhcCCCHHHHHHHHHHHhcCCC---CchHHHHHHhhcCCCHHHHHHHH-hhcccCCC-
Q 037752          178 ELSNIVIKYAKGIPLALKVLGRYLFGRSEEEWENAIEKLKRIPH---MDIQKVLKVSYDGLDDEEQNIFL-DIACFFKG-  252 (332)
Q Consensus       178 ~l~~~iv~~c~GlPLAl~~ig~~L~~k~~~~w~~~l~~l~~~~~---~~i~~~L~~Syd~L~~~~k~~fl-~~a~fp~~-  252 (332)
                      +....|++.|+|.|-.+..+...+     ..|..... -.....   ......+...+..|++..+..+. .+..|..+ 
T Consensus       203 ~~~~~ia~~~~G~pR~a~~~l~~~-----~~~a~~~~-~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~  276 (328)
T PRK00080        203 EGALEIARRSRGTPRIANRLLRRV-----RDFAQVKG-DGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGP  276 (328)
T ss_pred             HHHHHHHHHcCCCchHHHHHHHHH-----HHHHHHcC-CCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCc
Confidence            456788889999984332222221     11111100 000000   12334466778899998888886 66777765 


Q ss_pred             CCHHHHHHHHHHcCCChhHHHH-HHhhCCcceee
Q 037752          253 QHRDFVMNFQDACGFSAKIGIC-DLVDKSLVIIS  285 (332)
Q Consensus       253 ~~~~~l~~lw~~~g~~~~~~l~-~Lv~~sLl~~~  285 (332)
                      +..+.+...+....-..+..++ .|++++||+..
T Consensus       277 ~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~  310 (328)
T PRK00080        277 VGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRT  310 (328)
T ss_pred             eeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccC
Confidence            7888888877665555666777 99999999754

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=84.09  E-value=5.2  Score=36.80  Aligned_cols=103  Identities=14%  Similarity=0.093  Sum_probs=62.5

Q ss_pred             HHHHHHHHHhcCCchHHHHhhhhhcCCCHHHHHHHHHHHhcC--CC---CchHHHHHHhhcCCCHHHHHHHH-hhcccCC
Q 037752          178 ELSNIVIKYAKGIPLALKVLGRYLFGRSEEEWENAIEKLKRI--PH---MDIQKVLKVSYDGLDDEEQNIFL-DIACFFK  251 (332)
Q Consensus       178 ~l~~~iv~~c~GlPLAl~~ig~~L~~k~~~~w~~~l~~l~~~--~~---~~i~~~L~~Syd~L~~~~k~~fl-~~a~fp~  251 (332)
                      +....|++.|+|.|-.+..+...+       |..+ ......  ..   ......+..+|..|+...+..+. .++.+..
T Consensus       182 ~al~~ia~~~~G~pR~~~~ll~~~-------~~~a-~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~  253 (305)
T TIGR00635       182 EAALEIARRSRGTPRIANRLLRRV-------RDFA-QVRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQG  253 (305)
T ss_pred             HHHHHHHHHhCCCcchHHHHHHHH-------HHHH-HHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCC
Confidence            456778899999995443333321       1110 000000  00   11222356678899998888766 5576754


Q ss_pred             C-CCHHHHHHHHHHcCCChhHHHH-HHhhCCcceee-CCe
Q 037752          252 G-QHRDFVMNFQDACGFSAKIGIC-DLVDKSLVIIS-NNK  288 (332)
Q Consensus       252 ~-~~~~~l~~lw~~~g~~~~~~l~-~Lv~~sLl~~~-~~~  288 (332)
                      + ...+.+...+.......+..++ .|++++||... .|+
T Consensus       254 ~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~~~g~  293 (305)
T TIGR00635       254 GPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRTPRGR  293 (305)
T ss_pred             CcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccCCchh
Confidence            4 7778888777766666666788 69999999754 443

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	332
3ozi_A	204	Crystal Structure Of The Tir Domain From The Flax D		2e-31
3jrn_A	176	Crystal Structure Of Tir Domain From Arabidopsis Th		6e-31

>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204

Iteration: 1
 Score =  132 bits (333), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/159 (42%), Positives = 103/159 (64%), Gaps = 4/159 (2%)
Query: 1   MASSSSSINMNPQIKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTF-IDDKLNRGNEIS 59
           ++ S++     P ++Y+VFLSFRG D R  F   L  +L R KI TF  DD+L +G EI 
Sbjct: 21  ISDSTNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIG 80
Query: 60  PSLLSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYG-QIVVPVFYLVDPSDVRN 118
           P+LL AI+ SKI + I S GYA S+WCL EL +I+  + +   +I++P+FY+VDPSDVR+
Sbjct: 81  PNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRH 140
Query: 119 QTGTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGF 157
           QTG +  +F K   +F  +   +Q W+ A+++  +L G+
Sbjct: 141 QTGCYKKAFRKHANKFDGQ--TIQNWKDALKKVGDLKGW 177

>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176

Iteration: 1
 Score =  131 bits (329), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 70/143 (48%), Positives = 89/143 (62%), Gaps = 3/143 (2%)
Query: 15  KYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDK-LNRGNEISPSLLSAIEGSKISI 73
           KYDVFLSFRG D RHNFIS L   L R+ I TF DDK L  G   SP L S IE S+ ++
Sbjct: 8   KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAV 67
Query: 74  VIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEER 133
           V+ S+ YA+S WCL+ELV I++ + K    V+P+FY V+P+ VR QTG   + F K   R
Sbjct: 68  VVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR 127
Query: 134 FKEKIDMLQTWRIAMREAANLSG 156
             E  + +  WR A+   A LSG
Sbjct: 128 --EDPEKVLKWRQALTNFAQLSG 148

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	332
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	1e-87
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	4e-87
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	4e-70
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	4e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	1e-12
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	1e-07
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	2e-07
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	2e-05
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	5e-05

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204

 Score =  260 bits (667), Expect = 1e-87
 Identities = 68/162 (41%), Positives = 102/162 (62%), Gaps = 4/162 (2%)

Query: 1   MASSSSSINMNPQIKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDD-KLNRGNEIS 59
           ++ S++     P ++Y+VFLSFRG D R  F   L  +L R KI TF DD +L +G EI 
Sbjct: 21  ISDSTNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIG 80

Query: 60  PSLLSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYG-QIVVPVFYLVDPSDVRN 118
           P+LL AI+ SKI + I S GYA S+WCL EL +I+  + +   +I++P+FY+VDPSDVR+
Sbjct: 81  PNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRH 140

Query: 119 QTGTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDSH 160
           QTG +  +F K   +F      +Q W+ A+++  +L G+   
Sbjct: 141 QTGCYKKAFRKHANKFDG--QTIQNWKDALKKVGDLKGWHIG 180

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176

 Score =  258 bits (661), Expect = 4e-87
 Identities = 72/162 (44%), Positives = 95/162 (58%), Gaps = 10/162 (6%)

Query: 1   MASSSSSINMNPQIKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDK-LNRGNEIS 59
           M+S +++       KYDVFLSFRG D RHNFIS L   L R+ I TF DDK L  G   S
Sbjct: 1   MSSHTAT-------KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFS 53

Query: 60  PSLLSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQ 119
           P L S IE S+ ++V+ S+ YA+S WCL+ELV I++ + K    V+P+FY V+P+ VR Q
Sbjct: 54  PELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQ 113

Query: 120 TGTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDSHG 161
           TG   + F K   R     + +  WR A+   A LSG  S  
Sbjct: 114 TGVLAEQFKKHASREDP--EKVLKWRQALTNFAQLSGDCSGD 153

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score =  214 bits (547), Expect = 4e-70
 Identities = 27/148 (18%), Positives = 64/148 (43%), Gaps = 4/148 (2%)

Query: 2   ASSSSSINMNPQIKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDK-LNRGNEISP 60
           A  +++ ++     +D+F+S   +D + +F+  L   L       + DD  L  G+ +  
Sbjct: 7   AGPTTNADLTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRR 65

Query: 61  SLLSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVRNQT 120
           S+   +  S+  IV+ S  +    W   EL  + + ++     ++P+++ V   +V + +
Sbjct: 66  SIDKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFS 125

Query: 121 GTFGDSFSKLEERFKEKIDMLQTWRIAM 148
            T  D  +         +D +    +A+
Sbjct: 126 PTMADKLAFNTSTK--SVDEIVADLMAI 151

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 75.0 bits (184), Expect = 4e-15
 Identities = 20/181 (11%), Positives = 54/181 (29%), Gaps = 26/181 (14%)

Query: 178 ELSNIVIKYAKGIPLALKVLGRYLFGRSEEEWENAIEKLKRIPHMDIQK----------- 226
           ++ N  I+ + G P  L +  +    ++ E+      KL+    + ++            
Sbjct: 317 DVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECITPYSYKSLAM 376

Query: 227 VLKVSYDGLDDEEQNIFLDIACFFKGQH-----------RDFVMNFQDACGFSAKIGICD 275
            L+   + L DE+++          G              D   N ++         +  
Sbjct: 377 ALQRCVEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDDEVADRLKR 436

Query: 276 LVDKSLVIISNNK----ITMHDLLQEMGREIVRQESIKDSGKRSRLWHHEDIDQVLSKNT 331
           L  +  ++           +  ++    + +V  ++I +          E  +  +S   
Sbjct: 437 LSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTIANGISILEQRLLEIGNNNVSVPE 496

Query: 332 N 332
            
Sbjct: 497 R 497

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 74.5 bits (182), Expect = 8e-15
 Identities = 58/350 (16%), Positives = 107/350 (30%), Gaps = 97/350 (27%)

Query: 24  GKDVRHNFISHLNAALCR-KKIVTFIDDK---LNRGNEISP--------SLLSAIEGSKI 71
           GK         +   +C   K+   +D K   LN  N  SP         LL  I+ +  
Sbjct: 162 GKTW-------VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214

Query: 72  SIVIFSKGY-ASSRWCLNELVKILESKNKYGQIVVPVFYLV-DPSDVRNQTGTFGDSFSK 129
           S    S            EL ++L+SK  Y         LV    +V+N         +K
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSK-PY-----ENCLLVLL--NVQN---------AK 257

Query: 130 LEERFKEKIDMLQTWRIAMREAANLSGFDS-HGISRNAFGQNHPAAGYL--ELSNIVIKY 186
               F     +L T R            D     +      +H +      E+ ++++KY
Sbjct: 258 AWNAFNLSCKILLTTR-------FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310

Query: 187 A------------KGIPLALKVLGRYLFGRSEEEWENAIEKLKRIPHMDIQKVLKVSYDG 234
                           P  L      +   S  +     +  K +    +  +++ S + 
Sbjct: 311 LDCRPQDLPREVLTTNPRRLS-----IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365

Query: 235 LD-DEEQNIFLDIACFFKGQH--------------RDFVMNFQDACGFSAKIGICDLVDK 279
           L+  E + +F  ++ F    H              +  VM             +  L   
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV-----------VNKLHKY 414

Query: 280 SLVIISNNK--ITMHDLLQEMGREIVRQ----ESIKDSGKRSRLWHHEDI 323
           SLV     +  I++  +  E+  ++  +     SI D     + +  +D+
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 53/353 (15%), Positives = 113/353 (32%), Gaps = 88/353 (24%)

Query: 13  QIKY-DVFLSFRGKDVRHNFISHLNAALCR------KKIVTF--IDDKLNRGNEISPS-- 61
           Q +Y D+   F        F+ + +   C+      K I++   ID  +   + +S +  
Sbjct: 15  QYQYKDILSVFE-----DAFVDNFD---CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 62  LLSAIEGSKISIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFY-LVDPS------ 114
           L   +   +  +V              + V+ +   N Y  ++ P+      PS      
Sbjct: 67  LFWTLLSKQEEMV-------------QKFVEEVLRIN-YKFLMSPIKTEQRQPSMMTRMY 112

Query: 115 -DVRNQTGTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDSHGISRNAFGQNHPA 173
            + R++       F+K      +    L+   + +R A N+      G+     G+   A
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL---IDGVL--GSGKTWVA 167

Query: 174 AGYLELSNIVIKYAKGIPLALKVLGRYL-FGRSEEEWENAIEKLKRIPHMDIQKVLKVSY 232
                   +  K    I         +L         E  +E L+++ +      +  ++
Sbjct: 168 LDVCLSYKVQCKMDFKI--------FWLNLKNCNSP-ETVLEMLQKLLY-----QIDPNW 213

Query: 233 DGLDDEEQNIFLDIACFFKGQHRDFVM------------NFQDACGFSA-KIGICDLVDK 279
               D   NI L I    + + R  +             N Q+A  ++A  +  C    K
Sbjct: 214 TSRSDHSSNIKLRIH-SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS-C----K 267

Query: 280 SLVIISNNKITMHDLLQEMGREIVRQESIKDSGKRSRLWHHEDIDQVLSKNTN 332
            L+     ++T  D L       +  +    +         +++  +L K  +
Sbjct: 268 ILLTTRFKQVT--DFLSAATTTHISLDHHSMT------LTPDEVKSLLLKYLD 312

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146

 Score = 63.6 bits (155), Expect = 1e-12
 Identities = 17/106 (16%), Positives = 37/106 (34%), Gaps = 5/106 (4%)

Query: 15  KYDVFLSFRGKDVRHNFISHLNAAL--CRKKIVTFIDDK-LNRGNEISPSLLSAIEGSKI 71
            YDV +    +D        L + L      +  F+  +    G  I   L  A+  S  
Sbjct: 10  DYDVCVCHSEED--LVAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHC 67

Query: 72  SIVIFSKGYASSRWCLNELVKILESKNKYGQIVVPVFYLVDPSDVR 117
            +++ + G+    WC  ++++ L          +P+   +  +   
Sbjct: 68  RVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYP 113

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A Length = 178

 Score = 49.9 bits (119), Expect = 1e-07
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 4/84 (4%)

Query: 10  MNPQIKYDVFLSFRGKD---VRHNFISHLNAALCRKKIVTFIDDKLNRGNEISPSLLSAI 66
           +   +++  F+S+   D   V++  I +L        I  +     + G  IS +++S I
Sbjct: 30  LKRNVRFHAFISYSEHDSLWVKNELIPNLEKEDGSILICLYESY-FDPGKSISENIVSFI 88

Query: 67  EGSKISIVIFSKGYASSRWCLNEL 90
           E S  SI + S  +  + WC  E 
Sbjct: 89  EKSYKSIFVLSPNFVQNEWCHYEF 112

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 24/136 (17%), Positives = 53/136 (38%), Gaps = 18/136 (13%)

Query: 188 KGIPLALKVLGRYLFGRSEEEWENAIEKLKR-----------IPHMDIQKVLKVSYDGLD 236
           KG PL + ++G  L       WE  +++L+              +  + + + +S + L 
Sbjct: 318 KGSPLVVSLIGALLRDF-PNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLR 376

Query: 237 DEEQNIFLDIACFFKGQ--HRDFVMNFQDACGFSAKIGICDLVDKSLVIIS-NNKIT--- 290
           ++ ++ + D++   K        +    D      +  + + V+KSL+    N K     
Sbjct: 377 EDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYY 436

Query: 291 MHDLLQEMGREIVRQE 306
           +HDL  +   E    +
Sbjct: 437 LHDLQVDFLTEKNCSQ 452

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A Length = 149

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 4/81 (4%)

Query: 13 QIKYDVFLSFRGKD---VRHNFISHLNAALCRKKIVTFIDDKLNRGNEISPSLLSAIEGS 69
           I YD F+S+  +D   V +  +  L       K+     D    G  I  +++ +IE S
Sbjct: 3  NIXYDAFVSYSERDAYWVENLMVQELENFNPPFKLXLHKRD-FIHGKWIIDNIIDSIEKS 61

Query: 70 KISIVIFSKGYASSRWCLNEL 90
            ++ + S+ +  S W   EL
Sbjct: 62 HKTVFVLSENFVKSEWXKYEL 82

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens} Length = 159

 Score = 42.0 bits (98), Expect = 5e-05
 Identities = 20/109 (18%), Positives = 34/109 (31%), Gaps = 14/109 (12%)

Query: 15  KYDVFLSFRGKDVR---------HNFISHLNAALCRKK--IVTFIDDK-LNRGNEISPSL 62
            YD +LS+   D             F   +   +  K      FI D+ L         +
Sbjct: 2   DYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDV 61

Query: 63  LSAIEGSKISIVIFSKGYA-SSRWCLNELVKIL-ESKNKYGQIVVPVFY 109
              ++ SK  I++ +  Y     W + EL   L          V+ +  
Sbjct: 62  ARCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIEC 110

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	332
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	100.0
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	100.0
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	99.97
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	99.92
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	99.88
2js7_A	160	Myeloid differentiation primary response protein M	99.87
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	99.87
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	99.86
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.84
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.75
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	99.67
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.62
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.61
1eiw_A	111	Hypothetical protein MTH538; CHEY-like fold, flavo	97.28
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	95.62
3hyn_A	189	Putative signal transduction protein; DUF1863 fami	95.45
2fna_A	357	Conserved hypothetical protein; structural genomic	94.73
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	82.95

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=100.00  E-value=2.3e-48  Score=333.07  Aligned_cols=149  Identities=45%  Similarity=0.838  Sum_probs=138.4

Q ss_pred             CCCCCcceeEEEeccccccccchHHHHHHHHhcCCCeeeecC-CCCCCCCchHHHHHHhhhcceEEEEeecCCcCChhhH
Q 037752            9 NMNPQIKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDD-KLNRGNEISPSLLSAIEGSKISIVIFSKGYASSRWCL   87 (332)
Q Consensus         9 ~~~~~~~ydvFis~~~~D~~~~f~~~L~~~L~~~gi~~f~d~-~~~~g~~i~~~i~~~i~~Sr~~i~v~S~~y~~S~wc~   87 (332)
                      +.++.++|||||||||+|+|++|++||+++|+++||++|+|+ ++++|+.|.++|.+||++||++|+|||+||++|.||+
T Consensus        29 ~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl  108 (204)
T 3ozi_A           29 GSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCL  108 (204)
T ss_dssp             -----CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHH
T ss_pred             CCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHH
Confidence            566789999999999999999999999999999999999997 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhh-cCCeeEeeeeecCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHHhhhccccccc
Q 037752           88 NELVKILESKNK-YGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDS  159 (332)
Q Consensus        88 ~El~~~~~~~~~-~~~~vlpVfy~v~p~dv~~q~g~f~~~f~~~~~~~~~~~e~v~~W~~aL~~v~~~~g~~~  159 (332)
                      +||++|++|.+. ++++|+||||+|+|++||+|+|.||++|.++..++.+  +++++|+.||+++++++||++
T Consensus       109 ~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~~--~~v~~Wr~AL~~va~lsG~~~  179 (204)
T 3ozi_A          109 MELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDG--QTIQNWKDALKKVGDLKGWHI  179 (204)
T ss_dssp             HHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSCH--HHHHHHHHHHHHHHTSCBEEE
T ss_pred             HHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhCH--HHHHHHHHHHHHHhccCceec
Confidence            999999999865 6899999999999999999999999999999888743  579999999999999999997

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=100.00  E-value=4.2e-48  Score=326.28  Aligned_cols=166  Identities=43%  Similarity=0.682  Sum_probs=134.4

Q ss_pred             CCcceeEEEeccccccccchHHHHHHHHhcCCCeeeecC-CCCCCCCchHHHHHHhhhcceEEEEeecCCcCChhhHHHH
Q 037752           12 PQIKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDD-KLNRGNEISPSLLSAIEGSKISIVIFSKGYASSRWCLNEL   90 (332)
Q Consensus        12 ~~~~ydvFis~~~~D~~~~f~~~L~~~L~~~gi~~f~d~-~~~~g~~i~~~i~~~i~~Sr~~i~v~S~~y~~S~wc~~El   90 (332)
                      ..++|||||||||+|+|++|++||+++|+++||++|+|+ ++++|+.|.++|.+||++||++|+|||+||++|.||++||
T Consensus         5 ~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL   84 (176)
T 3jrn_A            5 TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDEL   84 (176)
T ss_dssp             --CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHH
T ss_pred             CCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHH
Confidence            478999999999999999999999999999999999997 9999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhcCCeeEeeeeecCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHHhhhcccccccCCccccccCCC
Q 037752           91 VKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKLEERFKEKIDMLQTWRIAMREAANLSGFDSHGISRNAFGQN  170 (332)
Q Consensus        91 ~~~~~~~~~~~~~vlpVfy~v~p~dv~~q~g~f~~~f~~~~~~~~~~~e~v~~W~~aL~~v~~~~g~~~~~F~~~AF~~~  170 (332)
                      ++|++|.+.++++|+||||+|+|++||+|+|.||++|.++..+  .+.+++++|+.||+++++++||++.         .
T Consensus        85 ~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~---------~  153 (176)
T 3jrn_A           85 VTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG---------D  153 (176)
T ss_dssp             HHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC---------S
T ss_pred             HHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC---------C
Confidence            9999999989999999999999999999999999999999887  4567899999999999999999961         1


Q ss_pred             CCCcchHHHHHHHHHHhc
Q 037752          171 HPAAGYLELSNIVIKYAK  188 (332)
Q Consensus       171 ~~~~~~~~l~~~iv~~c~  188 (332)
                      +..+-.+++++.|.++..
T Consensus       154 ~e~~~i~~Iv~~v~~~l~  171 (176)
T 3jrn_A          154 DDSKLVDKIANEISNKKT  171 (176)
T ss_dssp             CHHHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHHHHHHhc
Confidence            122224556666655544

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=99.97  E-value=8.5e-33  Score=230.63  Aligned_cols=120  Identities=20%  Similarity=0.359  Sum_probs=111.8

Q ss_pred             CCCCcceeEEEeccccccccchHHHHHHHHhcCCCeeeecC-CCCCCCCchHHHHHHhhhcceEEEEeecCCcCChhhHH
Q 037752           10 MNPQIKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDD-KLNRGNEISPSLLSAIEGSKISIVIFSKGYASSRWCLN   88 (332)
Q Consensus        10 ~~~~~~ydvFis~~~~D~~~~f~~~L~~~L~~~gi~~f~d~-~~~~g~~i~~~i~~~i~~Sr~~i~v~S~~y~~S~wc~~   88 (332)
                      .++.++|||||||+++| +..|+.+|+.+|+++|+++|+|+ ++.+|+.+.++|.++|++|+++|+|+|+||++|.||+.
T Consensus        15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~   93 (154)
T 3h16_A           15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK   93 (154)
T ss_dssp             ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH
T ss_pred             cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH
Confidence            35678999999999999 66799999999999999999999 89999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhcCCeeEeeeeecCCCcccccccchhhhHHHH
Q 037752           89 ELVKILESKNKYGQIVVPVFYLVDPSDVRNQTGTFGDSFSKL  130 (332)
Q Consensus        89 El~~~~~~~~~~~~~vlpVfy~v~p~dv~~q~g~f~~~f~~~  130 (332)
                      ||..++++...++++|+||||+|+|++|++|+|.|+++|...
T Consensus        94 El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~  135 (154)
T 3h16_A           94 ELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFN  135 (154)
T ss_dssp             HHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEE
T ss_pred             HHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhh
Confidence            999999998778889999999999999999999999988754

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=99.92  E-value=7.3e-27  Score=192.46  Aligned_cols=134  Identities=15%  Similarity=0.261  Sum_probs=92.9

Q ss_pred             CCCCcceeEEEeccccccccchHHHHHHHHhc--CCCeeeecC-CCCCCCCchHHHHHHhhhcceEEEEeecCCcCChhh
Q 037752           10 MNPQIKYDVFLSFRGKDVRHNFISHLNAALCR--KKIVTFIDD-KLNRGNEISPSLLSAIEGSKISIVIFSKGYASSRWC   86 (332)
Q Consensus        10 ~~~~~~ydvFis~~~~D~~~~f~~~L~~~L~~--~gi~~f~d~-~~~~g~~i~~~i~~~i~~Sr~~i~v~S~~y~~S~wc   86 (332)
                      ...++.|||||||+++|++  ||.+|+.+|++  .|+++|+|+ |+.+|+.|.++|.++|++||++|+|+|+||+.|.||
T Consensus         5 ~r~~k~YDvFISy~~~D~~--~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~wc   82 (146)
T 3ub2_A            5 SRWSKDYDVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPWC   82 (146)
T ss_dssp             CTTSSSEEEEEECCGGGHH--HHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHHH
T ss_pred             CCCCCcceEEEeCChhhHH--HHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHHH
Confidence            3457899999999999955  79999999998  599999988 999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhcCCeeEeeeeecCCCc----ccccccchhhhHHHHHHhhhhhhhHHHHHHHHH
Q 037752           87 LNELVKILESKNKYGQIVVPVFYLVDPSD----VRNQTGTFGDSFSKLEERFKEKIDMLQTWRIAM  148 (332)
Q Consensus        87 ~~El~~~~~~~~~~~~~vlpVfy~v~p~d----v~~q~g~f~~~f~~~~~~~~~~~e~v~~W~~aL  148 (332)
                      ..|+..++.+......+|+||||+|++++    ++.......   ......|....+.|.+|+.+|
T Consensus        83 ~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~---~~~d~~f~~l~~~v~~~~~~~  145 (146)
T 3ub2_A           83 KYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDG---RGPDGGFRQVKEAVMRYLQTL  145 (146)
T ss_dssp             HHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEET---TSGGGGHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeec---cChHhhHHHHHHHHHHHHHhc
Confidence            99999999987433447789999987554    444332211   122334444444588888764

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=99.88  E-value=6.1e-24  Score=175.82  Aligned_cols=103  Identities=17%  Similarity=0.332  Sum_probs=91.8

Q ss_pred             CCcceeEEEeccccccccchHHH-HHHHHhcC--CCeeeecC-CCCCCCCchHHHHHHhhhcceEEEEeecCCcCChhhH
Q 037752           12 PQIKYDVFLSFRGKDVRHNFISH-LNAALCRK--KIVTFIDD-KLNRGNEISPSLLSAIEGSKISIVIFSKGYASSRWCL   87 (332)
Q Consensus        12 ~~~~ydvFis~~~~D~~~~f~~~-L~~~L~~~--gi~~f~d~-~~~~g~~i~~~i~~~i~~Sr~~i~v~S~~y~~S~wc~   87 (332)
                      .++.|||||||+++|+  .||.+ |..+|++.  |+++|+|+ |+.+|+.+.++|.++|++||++|+|+|+||+.|.||+
T Consensus         2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~   79 (149)
T 1fyx_A            2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK   79 (149)
T ss_dssp             CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred             CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence            4678999999999995  69996 99999986  99999998 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh-hhcCCeeEeeeee-cCCCcc
Q 037752           88 NELVKILESK-NKYGQIVVPVFYL-VDPSDV  116 (332)
Q Consensus        88 ~El~~~~~~~-~~~~~~vlpVfy~-v~p~dv  116 (332)
                      .|+..++.+. ...+..|+||||+ +.+.++
T Consensus        80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~  110 (149)
T 1fyx_A           80 YELDFSHFRLFDENNDAAILILLEPIEKKAI  110 (149)
T ss_dssp             HHSCCSCCTTCGGGTTCCEEEESSCCCTTTS
T ss_pred             HHHHHHHHHHHhcCCCEEEEEEecCCChhhc
Confidence            9999988643 5667889999987 555444

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=99.87  E-value=3.1e-23  Score=173.42  Aligned_cols=100  Identities=17%  Similarity=0.268  Sum_probs=90.8

Q ss_pred             CCCcceeEEEeccccccccchHHHHHHHHhcC--CCeeeecC-CCCCCCCchHHHHHHhh-hcceEEEEeecCCcCChhh
Q 037752           11 NPQIKYDVFLSFRGKDVRHNFISHLNAALCRK--KIVTFIDD-KLNRGNEISPSLLSAIE-GSKISIVIFSKGYASSRWC   86 (332)
Q Consensus        11 ~~~~~ydvFis~~~~D~~~~f~~~L~~~L~~~--gi~~f~d~-~~~~g~~i~~~i~~~i~-~Sr~~i~v~S~~y~~S~wc   86 (332)
                      ..++.|||||||+++|  ..||.+|..+|+++  |+++|+|+ |+.+|+.|.++|.++|+ +||++|+|+|+||+.|.||
T Consensus        12 ~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc   89 (160)
T 2js7_A           12 HMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKEC   89 (160)
T ss_dssp             CCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHH
T ss_pred             CCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHH
Confidence            3467899999999999  67999999999985  69999988 99999999999999999 7999999999999999999


Q ss_pred             HHHHHHHHHhh-hhcCCeeEeeeeecC
Q 037752           87 LNELVKILESK-NKYGQIVVPVFYLVD  112 (332)
Q Consensus        87 ~~El~~~~~~~-~~~~~~vlpVfy~v~  112 (332)
                      ..|+..++.+. .+.+++|+||+|+.-
T Consensus        90 ~~El~~a~~~~~~~~~~~vIpV~~~~~  116 (160)
T 2js7_A           90 DFQTKFALSLSPGAHQKRLIPIKYKAM  116 (160)
T ss_dssp             HHHHHHHHHHCTTHHHHTEEEEESSCC
T ss_pred             HHHHHHHHHHHHccCCCEEEEEEEccc
Confidence            99999999876 445678999999854

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=99.87  E-value=2.2e-23  Score=177.11  Aligned_cols=102  Identities=19%  Similarity=0.398  Sum_probs=87.2

Q ss_pred             CCCCcceeEEEeccccccccchHHH-HHHHHhc--CCCeeeecC-CCCCCCCchHHHHHHhhhcceEEEEeecCCcCChh
Q 037752           10 MNPQIKYDVFLSFRGKDVRHNFISH-LNAALCR--KKIVTFIDD-KLNRGNEISPSLLSAIEGSKISIVIFSKGYASSRW   85 (332)
Q Consensus        10 ~~~~~~ydvFis~~~~D~~~~f~~~-L~~~L~~--~gi~~f~d~-~~~~g~~i~~~i~~~i~~Sr~~i~v~S~~y~~S~w   85 (332)
                      ...++.|||||||+++|  ..||.. |..+|++  +|+++|+|+ |+.+|+.|.++|.++|++||++|+|+|+||+.|.|
T Consensus        30 ~~~~~~yDvFISys~~D--~~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w  107 (178)
T 2j67_A           30 LKRNVRFHAFISYSEHD--SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW  107 (178)
T ss_dssp             CCCSCCEEEEEECCGGG--HHHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred             cCCCccceEEEECCCCC--HHHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence            34678999999999999  479975 9999998  899999998 99999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhh-hhcCCeeEeeeee-cCC
Q 037752           86 CLNELVKILESK-NKYGQIVVPVFYL-VDP  113 (332)
Q Consensus        86 c~~El~~~~~~~-~~~~~~vlpVfy~-v~p  113 (332)
                      |..|+..++.+. .+.+++|+||||+ +.+
T Consensus       108 c~~El~~a~~~~~~~~~~~vIpV~~~~i~~  137 (178)
T 2j67_A          108 CHYEFYFAHHNLFHENSDHIILILLEPIPF  137 (178)
T ss_dssp             GGTHHHHTTCC-------CEEEEESSCCCG
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEEecCCCh
Confidence            999999999755 5567789999997 443

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=99.86  E-value=1.1e-22  Score=169.78  Aligned_cols=100  Identities=20%  Similarity=0.235  Sum_probs=89.2

Q ss_pred             cceeEEEecccccc---------ccchHHHHHH-HHh-cCCCeeeecC-CCCCCCCchHHHHHHhhhcceEEEEeecCCc
Q 037752           14 IKYDVFLSFRGKDV---------RHNFISHLNA-ALC-RKKIVTFIDD-KLNRGNEISPSLLSAIEGSKISIVIFSKGYA   81 (332)
Q Consensus        14 ~~ydvFis~~~~D~---------~~~f~~~L~~-~L~-~~gi~~f~d~-~~~~g~~i~~~i~~~i~~Sr~~i~v~S~~y~   81 (332)
                      +.|||||||+++|+         +..||.+|.. .|+ +.|+++|+|+ |+.+|+.|.++|.++|++||.+|+|+|+||+
T Consensus         1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~   80 (159)
T 1t3g_A            1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV   80 (159)
T ss_dssp             CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred             CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence            36999999999996         4679999776 599 7999999988 9999999999999999999999999999997


Q ss_pred             -CChhhHHHHHHHHHhh-hhcCCeeEeeeeecCC
Q 037752           82 -SSRWCLNELVKILESK-NKYGQIVVPVFYLVDP  113 (332)
Q Consensus        82 -~S~wc~~El~~~~~~~-~~~~~~vlpVfy~v~p  113 (332)
                       .|.||..|+..++.+. .+.+..|+||+|+-.+
T Consensus        81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~  114 (159)
T 1t3g_A           81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELR  114 (159)
T ss_dssp             HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCC
T ss_pred             hcChHHHHHHHHHHHHHHhcCCCEEEEEEecccc
Confidence             9999999999999987 5667899999977444

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.84  E-value=3.2e-22  Score=198.89  Aligned_cols=142  Identities=10%  Similarity=0.064  Sum_probs=113.5

Q ss_pred             ccccccCCCCCCcchHHHHHHHHHHhcCCchHHHHhhhhhcCCCHHHHHHHHHH-HhcCCCCchHHHHHHhhcCCCHHHH
Q 037752          162 ISRNAFGQNHPAAGYLELSNIVIKYAKGIPLALKVLGRYLFGRSEEEWENAIEK-LKRIPHMDIQKVLKVSYDGLDDEEQ  240 (332)
Q Consensus       162 F~~~AF~~~~~~~~~~~l~~~iv~~c~GlPLAl~~ig~~L~~k~~~~w~~~l~~-l~~~~~~~i~~~L~~Syd~L~~~~k  240 (332)
                      |+++||+... ++++.+++.+|+++|+|+||||+++|+.|+.++ ++|...+.. +...+..++..+|.+||+.||+++|
T Consensus       302 f~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~~~~~i~~~l~~Sy~~L~~~lk  379 (549)
T 2a5y_B          302 LEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQ  379 (549)
T ss_dssp             HHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHHHH
T ss_pred             HHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhcccHHHHHHHHhcccccccHHHH
Confidence            8889987643 468889999999999999999999999998774 444333333 3333556799999999999999999


Q ss_pred             HHHH-----------hhcccCCCCCHHHHHHHHHHc--CCChh-----------HHHHHHhhCCcceee----CCeEEec
Q 037752          241 NIFL-----------DIACFFKGQHRDFVMNFQDAC--GFSAK-----------IGICDLVDKSLVIIS----NNKITMH  292 (332)
Q Consensus       241 ~~fl-----------~~a~fp~~~~~~~l~~lw~~~--g~~~~-----------~~l~~Lv~~sLl~~~----~~~~~mH  292 (332)
                      .||+           |||+||++++.+  +.+|+++  ||+..           .++++|+++||++..    ..+|+||
T Consensus       380 ~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~~~~~~~~~~~mH  457 (549)
T 2a5y_B          380 RCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKID  457 (549)
T ss_dssp             HHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSCSEEECSSSCEEECC
T ss_pred             HHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCeeEecCCCceEEEeC
Confidence            9999           999999986555  8899999  77643           269999999999976    2479999


Q ss_pred             HHHHHHHHHHHhhcC
Q 037752          293 DLLQEMGREIVRQES  307 (332)
Q Consensus       293 dlv~~~a~~i~~~e~  307 (332)
                      ||||+||++++.+++
T Consensus       458 dlv~~~a~~~~~~~~  472 (549)
T 2a5y_B          458 HIIHMFLKHVVDAQT  472 (549)
T ss_dssp             HHHHHHHHTTSCTHH
T ss_pred             hHHHHHHHHHHHHHH
Confidence            999999998887665

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.75  E-value=1.1e-18  Score=187.25  Aligned_cols=133  Identities=19%  Similarity=0.282  Sum_probs=116.0

Q ss_pred             CcchHHHHHHHHHHhcCCchHHHHhhhhhcCCCHHHHHHHHHHHhcCCC-----------CchHHHHHHhhcCCCHHHHH
Q 037752          173 AAGYLELSNIVIKYAKGIPLALKVLGRYLFGRSEEEWENAIEKLKRIPH-----------MDIQKVLKVSYDGLDDEEQN  241 (332)
Q Consensus       173 ~~~~~~l~~~iv~~c~GlPLAl~~ig~~L~~k~~~~w~~~l~~l~~~~~-----------~~i~~~L~~Syd~L~~~~k~  241 (332)
                      .+++.+++.+|+++|+||||||+++|+.|+.++ ..|...+++|.....           ..+..+|.+||+.|++++|+
T Consensus       303 ~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~  381 (1249)
T 3sfz_A          303 KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKD  381 (1249)
T ss_dssp             STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHH
T ss_pred             hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHH
Confidence            345667899999999999999999999998876 579999999866331           24889999999999999999


Q ss_pred             HHHhhcccCCC--CCHHHHHHHHHHcCCChhHHHHHHhhCCcceee-CC---eEEecHHHHHHHHHHHhhc
Q 037752          242 IFLDIACFFKG--QHRDFVMNFQDACGFSAKIGICDLVDKSLVIIS-NN---KITMHDLLQEMGREIVRQE  306 (332)
Q Consensus       242 ~fl~~a~fp~~--~~~~~l~~lw~~~g~~~~~~l~~Lv~~sLl~~~-~~---~~~mHdlv~~~a~~i~~~e  306 (332)
                      ||++||+||++  ++.+.++.+|.+++...+..|++|+++||++.. ++   +|+||||+|+||++.+.++
T Consensus       382 ~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~  452 (1249)
T 3sfz_A          382 YYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ  452 (1249)
T ss_dssp             HHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred             HHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence            99999999987  689999999988877788899999999999987 54   4999999999999986554

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=99.67  E-value=4.8e-17  Score=162.59  Aligned_cols=165  Identities=19%  Similarity=0.233  Sum_probs=127.8

Q ss_pred             ccccccCCCCCCcchHHHHHHHHHHhcCCchHHHHhhhhhcCCCHHHHHHHHHHHhcCCC-----------CchHHHHHH
Q 037752          162 ISRNAFGQNHPAAGYLELSNIVIKYAKGIPLALKVLGRYLFGRSEEEWENAIEKLKRIPH-----------MDIQKVLKV  230 (332)
Q Consensus       162 F~~~AF~~~~~~~~~~~l~~~iv~~c~GlPLAl~~ig~~L~~k~~~~w~~~l~~l~~~~~-----------~~i~~~L~~  230 (332)
                      |...++.   +.....+.+.+|+++|+|+||||+.+|+.|+.++ ..|...++.|.....           ..+..+|..
T Consensus       295 ~~~~~~~---~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~  370 (591)
T 1z6t_A          295 LSLFVNM---KKADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSI  370 (591)
T ss_dssp             HHHHHTS---CGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHH
T ss_pred             HHHHhCC---CcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHH
Confidence            5555543   2234457889999999999999999999998764 369888888875321           358899999


Q ss_pred             hhcCCCHHHHHHHHhhcccCCC--CCHHHHHHHHHHcCCChhHHHHHHhhCCcceee-C---CeEEecHHHHHHHHHHHh
Q 037752          231 SYDGLDDEEQNIFLDIACFFKG--QHRDFVMNFQDACGFSAKIGICDLVDKSLVIIS-N---NKITMHDLLQEMGREIVR  304 (332)
Q Consensus       231 Syd~L~~~~k~~fl~~a~fp~~--~~~~~l~~lw~~~g~~~~~~l~~Lv~~sLl~~~-~---~~~~mHdlv~~~a~~i~~  304 (332)
                      ||+.||++.|.||++||+||.|  ++.+.+..+|..++......++.|+++||++.. +   .+|+||+++|+++++...
T Consensus       371 s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~  450 (591)
T 1z6t_A          371 SVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC  450 (591)
T ss_dssp             HHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred             HHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence            9999999999999999999986  788899999987655567789999999999876 2   379999999999987621


Q ss_pred             ------------hcC-------cCCCCCcccccCcchHHHHHhhc
Q 037752          305 ------------QES-------IKDSGKRSRLWHHEDIDQVLSKN  330 (332)
Q Consensus       305 ------------~e~-------~~~~~~~~rl~~~~~~~~~l~~~  330 (332)
                                  ...       +..++.+.++|++..+.+++.-+
T Consensus       451 ~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~a~  495 (591)
T 1z6t_A          451 SQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAK  495 (591)
T ss_dssp             GGHHHHHHHHHHHHTTTCCGGGCCTTSTTHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHhhcCCCCCCCCCCCEEeehhhHHHHHHhcC
Confidence                        110       12345666778777788776543

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.62  E-value=1.3e-16  Score=165.04  Aligned_cols=130  Identities=12%  Similarity=0.158  Sum_probs=104.4

Q ss_pred             HhcCCchHHHHhhhhhcCC--CHHHHHHHHHHHhcCCCCchHHHHHHhhcCCCHHH-HHHHHhhcccCCC--CCHHHHHH
Q 037752          186 YAKGIPLALKVLGRYLFGR--SEEEWENAIEKLKRIPHMDIQKVLKVSYDGLDDEE-QNIFLDIACFFKG--QHRDFVMN  260 (332)
Q Consensus       186 ~c~GlPLAl~~ig~~L~~k--~~~~w~~~l~~l~~~~~~~i~~~L~~Syd~L~~~~-k~~fl~~a~fp~~--~~~~~l~~  260 (332)
                      .|+|+||||+++|+.|+++  +..+|+..       ....+..+|++||+.||+++ |+||++||+||++  ++.+.++.
T Consensus       322 ICgGLPLALkLaGs~Lr~k~~s~eeW~~~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~  394 (1221)
T 1vt4_I          322 VLTTNPRRLSIIAESIRDGLATWDNWKHV-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL  394 (1221)
T ss_dssp             HCCCCHHHHHHHHHHHHHSCSSHHHHHHC-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHH
T ss_pred             HhCCCHHHHHHHHHHHhCCCCCHHHHhcC-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence            3999999999999999987  67788653       34579999999999999999 9999999999987  67888999


Q ss_pred             HHHHcCC-ChhHHHHHHhhCCcceee--CCeEEecHHHHHHHHHHHhhcCcCCCCCcccccCcchHHHHH
Q 037752          261 FQDACGF-SAKIGICDLVDKSLVIIS--NNKITMHDLLQEMGREIVRQESIKDSGKRSRLWHHEDIDQVL  327 (332)
Q Consensus       261 lw~~~g~-~~~~~l~~Lv~~sLl~~~--~~~~~mHdlv~~~a~~i~~~e~~~~~~~~~rl~~~~~~~~~l  327 (332)
                      +|+++|. .+...|++|+++||++..  .++|+||||+++++..     ....+..++|+.++-.+.+++
T Consensus       395 LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr~~-----~~e~~alHrRLvd~Y~~~~vf  459 (1221)
T 1vt4_I          395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK-----LENEYALHRSIVDHYNIPKTF  459 (1221)
T ss_dssp             HHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHHHH-----HSCCTTHHHHHHHHHHHHHHC
T ss_pred             HhcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHhcC-----CCcHHHHHHHHHHHHHhhCcC
Confidence            9998863 356789999999999986  5689999999885521     113455666666665555444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.61  E-value=4.1e-16  Score=162.26  Aligned_cols=101  Identities=18%  Similarity=0.312  Sum_probs=90.3

Q ss_pred             CCCcceeEEEeccccccccchH-HHHHHHHhc-----CCCeeeecC-CCCCCCCchHHHHHHhhhcceEEEEeecCCcCC
Q 037752           11 NPQIKYDVFLSFRGKDVRHNFI-SHLNAALCR-----KKIVTFIDD-KLNRGNEISPSLLSAIEGSKISIVIFSKGYASS   83 (332)
Q Consensus        11 ~~~~~ydvFis~~~~D~~~~f~-~~L~~~L~~-----~gi~~f~d~-~~~~g~~i~~~i~~~i~~Sr~~i~v~S~~y~~S   83 (332)
                      ...++|||||||+++|  ..|| ..|...|++     .|+++|+++ |+.+|+.|.++|.++|++||++|+|+|++|+.|
T Consensus       666 ~~~~~yd~fisy~~~d--~~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s  743 (844)
T 3j0a_A          666 PDMYKYDAYLCFSSKD--FTWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRD  743 (844)
T ss_dssp             SSCCCCSEEEECCSTT--HHHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHH
T ss_pred             ccceeccEEEEeeCCc--HHHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccC
Confidence            3568999999999999  4577 779999985     589999998 999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHhh-hhcCCeeEeeeeecCC
Q 037752           84 RWCLNELVKILESK-NKYGQIVVPVFYLVDP  113 (332)
Q Consensus        84 ~wc~~El~~~~~~~-~~~~~~vlpVfy~v~p  113 (332)
                      .||..|+..++.+. .+.+++|+||||+-.|
T Consensus       744 ~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~  774 (844)
T 3j0a_A          744 GWCLEAFSYAQGRCLSDLNSALIMVVVGSLS  774 (844)
T ss_dssp             TSTTHHHHHHHSCCCCSSCTTEEEEESSCCC
T ss_pred             hHHHHHHHHHHHHHHHhcCCcEEEEEeccCC
Confidence            99999999888766 5677899999998444

>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1

Probab=97.28  E-value=0.00022  Score=54.86  Aligned_cols=72  Identities=10%  Similarity=0.057  Sum_probs=51.2

Q ss_pred             cceeEEEeccccccccchHHHHHHHHhcCCCeeeecCCCCCCCCchHHHHHHhhhcceEEEEeecCCcCChhhHHHHHHH
Q 037752           14 IKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDKLNRGNEISPSLLSAIEGSKISIVIFSKGYASSRWCLNELVKI   93 (332)
Q Consensus        14 ~~ydvFis~~~~D~~~~f~~~L~~~L~~~gi~~f~d~~~~~g~~i~~~i~~~i~~Sr~~i~v~S~~y~~S~wc~~El~~~   93 (332)
                      ..|.+||||..+|..+.|++.|    .+.|+. |.|              ..|+.|.+.|++.+++..+|.||..|+..+
T Consensus         3 ~~~~lFISh~~~d~~~~L~~~l----~~~~f~-~~~--------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A   63 (111)
T 1eiw_A            3 AEIRLYITEGEVEDYRVFLERL----EQSGLE-WRP--------------ATPEDADAVIVLAGLWGTRRDEILGAVDLA   63 (111)
T ss_dssp             CCEEEEECCCCSHHHHHHHHHH----HHHCSC-EEE--------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHHH
T ss_pred             ceEEEEEecccHhHHHHHHHHH----hCCCCe-eec--------------CccccCCEEEEEeCCCcCCChHHHHHHHHH
Confidence            3689999999998333333433    344442 333              568999999999999999999999997654


Q ss_pred             HHhhhhcCCeeEeee
Q 037752           94 LESKNKYGQIVVPVF  108 (332)
Q Consensus        94 ~~~~~~~~~~vlpVf  108 (332)
                      .+    .+..|+-|.
T Consensus        64 ~~----~gkpIigV~   74 (111)
T 1eiw_A           64 RK----SSKPIITVR   74 (111)
T ss_dssp             TT----TTCCEEEEC
T ss_pred             HH----cCCCEEEEE
Confidence            44    455666654

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=95.62  E-value=0.047  Score=49.39  Aligned_cols=112  Identities=12%  Similarity=0.108  Sum_probs=70.4

Q ss_pred             HHHHHHHHHhcCCchHHHHhhhhhcC-CCHHHHH-HHHHHHhcCCCCchHHHHHHhhcCC---CHHHHHHHHhhcccCCC
Q 037752          178 ELSNIVIKYAKGIPLALKVLGRYLFG-RSEEEWE-NAIEKLKRIPHMDIQKVLKVSYDGL---DDEEQNIFLDIACFFKG  252 (332)
Q Consensus       178 ~l~~~iv~~c~GlPLAl~~ig~~L~~-k~~~~w~-~~l~~l~~~~~~~i~~~L~~Syd~L---~~~~k~~fl~~a~fp~~  252 (332)
                      +.+..+...|+|.|+++..++..+.. .+...+- ...+..        ...+.-.+..|   ++..+.++..+|+  ..
T Consensus       226 ~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~l~~~~~~~~~~l~~la~--g~  295 (350)
T 2qen_A          226 NEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVA--------KGLIMGELEELRRRSPRYVDILRAIAL--GY  295 (350)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHH--------HHHHHHHHHHHHHHCHHHHHHHHHHHT--TC
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHH--------HHHHHHHHHHHHhCChhHHHHHHHHHh--CC
Confidence            46778999999999999999876532 3332221 111111        11111112222   7899999999998  23


Q ss_pred             CCHHHHHHHHHHc--CCCh---hHHHHHHhhCCcceeeCCeEEe-cHHHHHHH
Q 037752          253 QHRDFVMNFQDAC--GFSA---KIGICDLVDKSLVIISNNKITM-HDLLQEMG  299 (332)
Q Consensus       253 ~~~~~l~~lw~~~--g~~~---~~~l~~Lv~~sLl~~~~~~~~m-Hdlv~~~a  299 (332)
                      .+...+...+...  |...   ...++.|++++||...+++|++ |.+++.+-
T Consensus       296 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~~~~  348 (350)
T 2qen_A          296 NRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVL  348 (350)
T ss_dssp             CSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEESSHHHHHHH
T ss_pred             CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEecCCEEEEecHHHHHHH
Confidence            5666666655332  3432   3469999999999877778887 55777653

>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}

Probab=95.45  E-value=0.042  Score=45.50  Aligned_cols=83  Identities=19%  Similarity=0.175  Sum_probs=59.6

Q ss_pred             cccccccchHHHHHHHHhcCCCeeeecC-CCC-------C-CCCchHHHHHHhhhcceEEEEeecCCcCChhhHHHHHHH
Q 037752           23 RGKDVRHNFISHLNAALCRKKIVTFIDD-KLN-------R-GNEISPSLLSAIEGSKISIVIFSKGYASSRWCLNELVKI   93 (332)
Q Consensus        23 ~~~D~~~~f~~~L~~~L~~~gi~~f~d~-~~~-------~-g~~i~~~i~~~i~~Sr~~i~v~S~~y~~S~wc~~El~~~   93 (332)
                      ...|  -...+.|..--....+..|.|- +..       . -+.|...+.+.|..|...|+++|++...|.|-..|+..+
T Consensus        27 a~~D--i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~A  104 (189)
T 3hyn_A           27 STHD--FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYG  104 (189)
T ss_dssp             GSTT--HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred             ccch--HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHH
Confidence            3455  3356667666666566777775 442       2 235778999999999999999999999999999998877


Q ss_pred             HHhhhhcCCeeEeeeee
Q 037752           94 LESKNKYGQIVVPVFYL  110 (332)
Q Consensus        94 ~~~~~~~~~~vlpVfy~  110 (332)
                      ++   ..+..|+-|.-+
T Consensus       105 i~---~~~~PII~Vy~~  118 (189)
T 3hyn_A          105 IG---TKGLPVIVIYPD  118 (189)
T ss_dssp             TT---TTCCCEEEEETT
T ss_pred             HH---hcCCcEEEEECC
Confidence            72   234567766533

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=94.73  E-value=0.07  Score=48.31  Aligned_cols=111  Identities=20%  Similarity=0.141  Sum_probs=70.4

Q ss_pred             HHHHHHhcCCchHHHHhhhhhcC-CCHHHHHH-HHHHHhcCCCCchHHHHH-Hhhc--CCCHHHHHHHHhhcccCCCCCH
Q 037752          181 NIVIKYAKGIPLALKVLGRYLFG-RSEEEWEN-AIEKLKRIPHMDIQKVLK-VSYD--GLDDEEQNIFLDIACFFKGQHR  255 (332)
Q Consensus       181 ~~iv~~c~GlPLAl~~ig~~L~~-k~~~~w~~-~l~~l~~~~~~~i~~~L~-~Syd--~L~~~~k~~fl~~a~fp~~~~~  255 (332)
                      ..+...|+|.|+++..++..+.. .+.+.|-. ..+....    .+...+. +.++  .|++..+.++..+|+ . . +.
T Consensus       233 ~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~-~~  305 (357)
T 2fna_A          233 EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKK----LILKEFENFLHGREIARKRYLNIMRTLSK-C-G-KW  305 (357)
T ss_dssp             HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH----HHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B-CH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHH----HHHHHHHHHhhccccccHHHHHHHHHHHc-C-C-CH
Confidence            78899999999999999887643 34333321 1111110    1112222 2121  688899999999998 3 2 66


Q ss_pred             HHHHHHHH-HcC--CC---hhHHHHHHhhCCcceeeCCeEEe-cHHHHHH
Q 037752          256 DFVMNFQD-ACG--FS---AKIGICDLVDKSLVIISNNKITM-HDLLQEM  298 (332)
Q Consensus       256 ~~l~~lw~-~~g--~~---~~~~l~~Lv~~sLl~~~~~~~~m-Hdlv~~~  298 (332)
                      ..+..... ..|  ..   ....++.|++++||....+.|++ |.+++++
T Consensus       306 ~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~  355 (357)
T 2fna_A          306 SDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLA  355 (357)
T ss_dssp             HHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHh
Confidence            66665432 234  32   23579999999999876677885 6788765

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=82.95  E-value=2.4  Score=39.01  Aligned_cols=102  Identities=16%  Similarity=0.039  Sum_probs=58.5

Q ss_pred             HHHHHHHHHhc------CCchHHHHhhhh-hc-----CC---CHHHHHHHHHHHhcCCCCchHHHHHHhhcCCCHHHHHH
Q 037752          178 ELSNIVIKYAK------GIPLALKVLGRY-LF-----GR---SEEEWENAIEKLKRIPHMDIQKVLKVSYDGLDDEEQNI  242 (332)
Q Consensus       178 ~l~~~iv~~c~------GlPLAl~~ig~~-L~-----~k---~~~~w~~~l~~l~~~~~~~i~~~L~~Syd~L~~~~k~~  242 (332)
                      +....+++.|+      |.|..+..+... +.     +.   +...+..++.....      ...+.-+++.||+..+.+
T Consensus       240 ~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~  313 (412)
T 1w5s_A          240 RHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELII  313 (412)
T ss_dssp             HHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHH
Confidence            45677888888      999655444322 11     11   23344433332210      234555778899999999


Q ss_pred             HHhhcccC----CCCCHHHHHHHH-----HHcCCC------hhHHHHHHhhCCcceee
Q 037752          243 FLDIACFF----KGQHRDFVMNFQ-----DACGFS------AKIGICDLVDKSLVIIS  285 (332)
Q Consensus       243 fl~~a~fp----~~~~~~~l~~lw-----~~~g~~------~~~~l~~Lv~~sLl~~~  285 (332)
                      +..++.++    ..++...+...+     ...|..      ....++.|++.+||...
T Consensus       314 l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~  371 (412)
T 1w5s_A          314 LRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK  371 (412)
T ss_dssp             HHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence            99999764    125555444322     223432      13468999999999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	332
d1fyva_	161	c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H	7e-18
d1fyxa_	149	c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H	5e-16
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	2e-13

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.4 bits (190), Expect = 7e-18
 Identities = 21/113 (18%), Positives = 44/113 (38%), Gaps = 3/113 (2%)

Query: 10  MNPQIKYDVFLSFRGKDVRHNFISHLNAALCRKKIVTFIDDK-LNRGNEISPSLLSAIEG 68
           +   +++  F+S+ G D      + L   L ++ +   + ++    G  I  ++++ IE 
Sbjct: 7   LQRNLQFHAFISYSGHD-SFWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEK 65

Query: 69  SKISIVIFSKGYASSRWCLNELVKILESKNKYGQIV-VPVFYLVDPSDVRNQT 120
           S  SI + S  +  S WC  EL     +    G    + +     P      +
Sbjct: 66  SYKSIFVLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIPSS 118

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.1 bits (176), Expect = 5e-16
 Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 5/110 (4%)

Query: 14  IKYDVFLSFRGKD---VRHNFISHLNAALCRKKIVTFIDDKLNRGNEISPSLLSAIEGSK 70
           I YD F+S+  +D   V +  +  L       K+     D ++    I  +++ +IE S 
Sbjct: 4   ICYDAFVSYSERDAYWVENLMVQELENFNPPFKLCLHKRDFIHGKW-IIDNIIDSIEKSH 62

Query: 71  ISIVIFSKGYASSRWCLNELVKIL-ESKNKYGQIVVPVFYLVDPSDVRNQ 119
            ++ + S+ +  S WC  EL        ++     + +           Q
Sbjct: 63  KTVFVLSENFVKSEWCKYELDFSHFRLFDENNDAAILILLEPIEKKAIPQ 112

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 67.5 bits (164), Expect = 2e-13
 Identities = 12/82 (14%), Positives = 27/82 (32%), Gaps = 1/82 (1%)

Query: 162 ISRNAFGQNHPAAGYLELSNIVIKYAKGIPLALKVLGRYLFGRSEEEWENAIEKLKRIPH 221
           +               ++ N  I+ + G P  L +  +    ++ E+      KL+    
Sbjct: 194 LEAYGMPMPVGEKEE-DVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGL 252

Query: 222 MDIQKVLKVSYDGLDDEEQNIF 243
           + ++ +   SY  L    Q   
Sbjct: 253 VGVECITPYSYKSLAMALQRCV 274

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	332
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	99.81
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	99.77
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.38

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=3.8e-21  Score=159.13  Aligned_cols=101  Identities=19%  Similarity=0.414  Sum_probs=91.2

Q ss_pred             CCCCCcceeEEEeccccccccchH-HHHHHHHhcCCCeeeecC-CCCCCCCchHHHHHHhhhcceEEEEeecCCcCChhh
Q 037752            9 NMNPQIKYDVFLSFRGKDVRHNFI-SHLNAALCRKKIVTFIDD-KLNRGNEISPSLLSAIEGSKISIVIFSKGYASSRWC   86 (332)
Q Consensus         9 ~~~~~~~ydvFis~~~~D~~~~f~-~~L~~~L~~~gi~~f~d~-~~~~g~~i~~~i~~~i~~Sr~~i~v~S~~y~~S~wc   86 (332)
                      ....+++|||||||+++|  ..|| ..|...|+++|+++|+|+ ++.+|+.+.++|.++|++|+++|+|+|++|..|.||
T Consensus         6 ~~~~~~~yDvFisys~~D--~~~v~~~L~~~Le~~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~s~w~   83 (161)
T d1fyva_           6 ELQRNLQFHAFISYSGHD--SFWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQSEWC   83 (161)
T ss_dssp             TSSSCCCEEEEEECCGGG--HHHHHHTHHHHHHTTTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHHHHTSH
T ss_pred             HcCCCCeeEEEEecChhH--HHHHHHHHHHHHHhCCCcceEeccccccccccHHHHHHHHHhCCEEEEEecCccccChHH
Confidence            456789999999999999  4577 579999999999999998 999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh-hhcCCeeEeeeeec
Q 037752           87 LNELVKILESK-NKYGQIVVPVFYLV  111 (332)
Q Consensus        87 ~~El~~~~~~~-~~~~~~vlpVfy~v  111 (332)
                      ..|+..++.+. ..+..+++||+++-
T Consensus        84 ~~E~~~a~~~~~~~~~~~lIpV~l~~  109 (161)
T d1fyva_          84 HYELYFAHHNLFHEGSNSLILILLEP  109 (161)
T ss_dssp             HHHHHTTSCCCSCSSCSSEEEEESSC
T ss_pred             HHHHHHHHHHHHHcCCCceeEEEEec
Confidence            99999988766 45567899999873

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3.1e-20  Score=151.64  Aligned_cols=100  Identities=18%  Similarity=0.321  Sum_probs=87.4

Q ss_pred             CCcceeEEEeccccccccchH-HHHHHHHhc--CCCeeeecC-CCCCCCCchHHHHHHhhhcceEEEEeecCCcCChhhH
Q 037752           12 PQIKYDVFLSFRGKDVRHNFI-SHLNAALCR--KKIVTFIDD-KLNRGNEISPSLLSAIEGSKISIVIFSKGYASSRWCL   87 (332)
Q Consensus        12 ~~~~ydvFis~~~~D~~~~f~-~~L~~~L~~--~gi~~f~d~-~~~~g~~i~~~i~~~i~~Sr~~i~v~S~~y~~S~wc~   87 (332)
                      .++.|||||||+++|  ..|| ..|...|++  .|+++|+|+ ++.+|+.+.++|.++|++|++.|+|+|++|+.|.||.
T Consensus         2 ~~~~YDvFiSys~~D--~~~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc~   79 (149)
T d1fyxa_           2 RNICYDAFVSYSERD--AYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWCK   79 (149)
T ss_dssp             CSCCEEEEEECCGGG--HHHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred             CCCEEEEEEECchhh--HHHHHHHHHHHHHhcCCCceEEEecccccccchHHHHHHHHHHhCCEEEEEEcCccccccchH
Confidence            588999999999999  5576 568999976  489999998 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhh-hhcCCeeEeeeeecCC
Q 037752           88 NELVKILESK-NKYGQIVVPVFYLVDP  113 (332)
Q Consensus        88 ~El~~~~~~~-~~~~~~vlpVfy~v~p  113 (332)
                      .|+..++... +.++..++||+++..+
T Consensus        80 ~E~~~a~~~~~~~~~~~iIpV~l~~~~  106 (149)
T d1fyxa_          80 YELDFSHFRLFDENNDAAILILLEPIE  106 (149)
T ss_dssp             HHSCCSCCTTCGGGTTCCEEEESSCCC
T ss_pred             HHHHHHHHHHHHcCCceEEEEEeccCc
Confidence            9997766544 5667899999987433

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.38  E-value=3.9e-14  Score=126.53  Aligned_cols=84  Identities=14%  Similarity=0.086  Sum_probs=74.9

Q ss_pred             ccccccCCCCCCcchHHHHHHHHHHhcCCchHHHHhhhhhcCCCHHHHHHHHHHHhcCCCCchHHHHHHhhcCCCHHHHH
Q 037752          162 ISRNAFGQNHPAAGYLELSNIVIKYAKGIPLALKVLGRYLFGRSEEEWENAIEKLKRIPHMDIQKVLKVSYDGLDDEEQN  241 (332)
Q Consensus       162 F~~~AF~~~~~~~~~~~l~~~iv~~c~GlPLAl~~ig~~L~~k~~~~w~~~l~~l~~~~~~~i~~~L~~Syd~L~~~~k~  241 (332)
                      |+++||....+ +..++++++|+++|+|+||||+++|+.|+.++.+.|.+..+.|......++..+|.+||++||+++|+
T Consensus       194 f~~~~~~~~~~-~~~~~~~~~iv~~c~GlPLAl~~ig~~l~~k~~~~~~~~~~~L~~~~~~~v~~il~~sY~~L~~~lk~  272 (277)
T d2a5yb3         194 LEAYGMPMPVG-EKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQR  272 (277)
T ss_dssp             HHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHHHHH
T ss_pred             HHHHhCCccCc-hhhHHHHHHHHHHhCCCHHHHHHHHHHhccCCHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccHHHHH
Confidence            88999875543 45688999999999999999999999999999999999999998877788999999999999999999


Q ss_pred             HHHhh
Q 037752          242 IFLDI  246 (332)
Q Consensus       242 ~fl~~  246 (332)
                      ||.++
T Consensus       273 c~~~l  277 (277)
T d2a5yb3         273 CVEVL  277 (277)
T ss_dssp             HHHTS
T ss_pred             HHHhC
Confidence            99764