Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
ID Alignment Graph Length
Definition
E-value Query 105
PLN02549 578
PLN02549, PLN02549, asparagine synthase (glutamine
5e-75 PRK09431 554
PRK09431, asnB, asparagine synthetase B; Provision
3e-52 cd00712 220
cd00712, AsnB, Glutamine amidotransferases class-I
4e-47 PTZ00077 586
PTZ00077, PTZ00077, asparagine synthetase-like pro
3e-43 COG0367 542
COG0367, AsnB, Asparagine synthase (glutamine-hydr
4e-38 TIGR01536 466
TIGR01536, asn_synth_AEB, asparagine synthase (glu
8e-38 TIGR03108 628
TIGR03108, eps_aminotran_1, exosortase A system-as
7e-31 pfam13537 120
pfam13537, GATase_7, Glutamine amidotransferase do
3e-29 cd00352 220
cd00352, Gn_AT_II, Glutamine amidotransferases cla
1e-26 pfam13522 130
pfam13522, GATase_6, Glutamine amidotransferase do
2e-26 TIGR03104 589
TIGR03104, trio_amidotrans, asparagine synthase fa
3e-18 pfam00310 223
pfam00310, GATase_2, Glutamine amidotransferases c
2e-15 COG0449 597
COG0449, GlmS, Glucosamine 6-phosphate synthetase,
1e-10 cd03766 181
cd03766, Gn_AT_II_novel, Gn_AT_II_novel
3e-09 cd00714 215
cd00714, GFAT, Glutamine amidotransferases class-I
2e-08 TIGR01135 607
TIGR01135, glmS, glucosamine--fructose-6-phosphate
5e-08 COG0034 470
COG0034, PurF, Glutamine phosphoribosylpyrophospha
6e-08 PRK00331 604
PRK00331, PRK00331, glucosamine--fructose-6-phosph
1e-07 PLN02440 479
PLN02440, PLN02440, amidophosphoribosyltransferase
2e-07 cd00715 252
cd00715, GPATase_N, Glutamine amidotransferases cl
3e-06 TIGR01134 442
TIGR01134, purF, amidophosphoribosyltransferase
2e-05 PLN02981 680
PLN02981, PLN02981, glucosamine:fructose-6-phospha
2e-04 cd01907 249
cd01907, GlxB, Glutamine amidotransferases class-I
7e-04 PRK07631 475
PRK07631, PRK07631, amidophosphoribosyltransferase
8e-04 PRK09123 479
PRK09123, PRK09123, amidophosphoribosyltransferase
0.001 PRK05793 469
PRK05793, PRK05793, amidophosphoribosyltransferase
0.002
>gnl|CDD|178164 PLN02549, PLN02549, asparagine synthase (glutamine-hydrolyzing)
Back Hide alignment and domain information
Score = 231 bits (590), Expect = 5e-75
Identities = 87/105 (82%), Positives = 98/105 (93%)
Query: 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHGDCYLAHQRLAIVDPTSGD 60
MCGILAV GC D+SQAKRSR++ELSRRLRHRGPDWSGL+ + DCYLAH+RLAI+DP SGD
Sbjct: 1 MCGILAVLGCSDDSQAKRSRVLELSRRLRHRGPDWSGLYGNEDCYLAHERLAIMDPESGD 60
Query: 61 QPLYNEDKTVVVTVNGEIYNHKQLREQLKNHQFRTGSDCEVIAHL 105
QPLYNEDKT+VVT NGEIYNHK+LRE+LK H+FRTGSDCEVIAHL
Sbjct: 61 QPLYNEDKTIVVTANGEIYNHKELREKLKLHKFRTGSDCEVIAHL 105
>gnl|CDD|236513 PRK09431, asnB, asparagine synthetase B; Provisional
Back Show alignment and domain information
Score = 171 bits (435), Expect = 3e-52
Identities = 55/106 (51%), Positives = 74/106 (69%), Gaps = 1/106 (0%)
Query: 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHGDCYLAHQRLAIVDPTSGD 60
MCGI + ++ R + +E+SR +RHRGPDWSG++ + L H+RL+IVD G
Sbjct: 1 MCGIFGILDIKTDADELRKKALEMSRLMRHRGPDWSGIYASDNAILGHERLSIVDVNGGA 60
Query: 61 QPLYNEDKTVVVTVNGEIYNHKQLREQLKN-HQFRTGSDCEVIAHL 105
QPLYNED T V+ VNGEIYNH++LR +L + + F+TGSDCEVI L
Sbjct: 61 QPLYNEDGTHVLAVNGEIYNHQELRAELGDKYAFQTGSDCEVILAL 106
>gnl|CDD|238364 cd00712, AsnB, Glutamine amidotransferases class-II (GATase) asparagine synthase_B type
Back Show alignment and domain information
Score = 149 bits (379), Expect = 4e-47
Identities = 46/106 (43%), Positives = 67/106 (63%), Gaps = 3/106 (2%)
Query: 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHGDCYLAHQRLAIVDPTSGDQ 61
CGI + G +D + R+ + + L HRGPD SG+ L H+RL+I+D + G Q
Sbjct: 1 CGIAGIIG-LDGASVDRATLERMLDALAHRGPDGSGIWIDEGVALGHRRLSIIDLSGGAQ 59
Query: 62 PLYNEDKTVVVTVNGEIYNHKQLREQLKN--HQFRTGSDCEVIAHL 105
P+ +ED +V+ NGEIYN+++LR +L+ H+FRT SD EVI HL
Sbjct: 60 PMVSEDGRLVLVFNGEIYNYRELRAELEALGHRFRTHSDTEVILHL 105
Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia. Length = 220
>gnl|CDD|185431 PTZ00077, PTZ00077, asparagine synthetase-like protein; Provisional
Back Show alignment and domain information
Score = 147 bits (373), Expect = 3e-43
Identities = 55/112 (49%), Positives = 74/112 (66%), Gaps = 7/112 (6%)
Query: 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHY-----HGDCYLAHQRLAIVD 55
MCGILA+F R + +ELS+RLRHRGPDWSG+ LAH+RLAIVD
Sbjct: 1 MCGILAIFNSKGERHELRRKALELSKRLRHRGPDWSGIIVLENSPGTYNILAHERLAIVD 60
Query: 56 PTSGDQPLYNEDKTVVVTVNGEIYNHKQLREQL--KNHQFRTGSDCEVIAHL 105
+ G QPL ++D+TV + NGEIYNH ++R +L + ++F + SDCE+I HL
Sbjct: 61 LSDGKQPLLDDDETVALMQNGEIYNHWEIRPELEKEGYKFSSNSDCEIIGHL 112
>gnl|CDD|223444 COG0367, AsnB, Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Back Show alignment and domain information
Score = 133 bits (336), Expect = 4e-38
Identities = 46/107 (42%), Positives = 64/107 (59%), Gaps = 3/107 (2%)
Query: 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHGDCYLAHQRLAIVDPTSGD 60
MCGI + N +S I E+++ LRHRGPD SG+ + L H+RL+IVD + G
Sbjct: 1 MCGIAGIL-NFKNLIDAKSIIEEMTKLLRHRGPDDSGVWISLNALLGHRRLSIVDLSGGR 59
Query: 61 QPLYNEDKTVVVTVNGEIYNHKQLREQL--KNHQFRTGSDCEVIAHL 105
QP+ E + NGEIYN ++LR++L ++FRT SD EVI L
Sbjct: 60 QPMIKEGGKYAIVYNGEIYNVEELRKELREAGYEFRTYSDTEVILTL 106
>gnl|CDD|233454 TIGR01536, asn_synth_AEB, asparagine synthase (glutamine-hydrolyzing)
Back Show alignment and domain information
Score = 131 bits (331), Expect = 8e-38
Identities = 49/105 (46%), Positives = 65/105 (61%), Gaps = 3/105 (2%)
Query: 4 ILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHGD-CYLAHQRLAIVDPTSGDQP 62
I F D + + I+ +S + HRGPD SG+ Y L H+RLAI+D + G QP
Sbjct: 1 IAGFFDLDDKAVEEDEAILRMSDTIAHRGPDASGIEYKDGNAILGHRRLAIIDLSGGAQP 60
Query: 63 LYNEDKTVVVTVNGEIYNHKQLREQL--KNHQFRTGSDCEVIAHL 105
+ NE KT V+ NGEIYNH++LRE+L K + F+T SD EVI HL
Sbjct: 61 MSNEGKTYVIVFNGEIYNHEELREELEAKGYTFQTDSDTEVILHL 105
This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff [Amino acid biosynthesis, Aspartate family]. Length = 466
>gnl|CDD|132152 TIGR03108, eps_aminotran_1, exosortase A system-associated amidotransferase 1
Back Show alignment and domain information
Score = 113 bits (285), Expect = 7e-31
Identities = 47/106 (44%), Positives = 62/106 (58%), Gaps = 2/106 (1%)
Query: 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHGDCYLAHQRLAIVDPTSGD 60
MCGI +F R + ++ HRGPD G+H L H+RL+I+D + G
Sbjct: 1 MCGITGIFDLTGQRPIDRDLLRRMNDAQAHRGPDGGGVHVEPGIGLGHRRLSIIDLSGGQ 60
Query: 61 QPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAH 104
QPL+NED +VVV NGEIYN ++L +L+ H FRT SD EVI H
Sbjct: 61 QPLFNEDGSVVVVFNGEIYNFQELVAELQALGHVFRTRSDTEVIVH 106
The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins. Length = 628
>gnl|CDD|222208 pfam13537, GATase_7, Glutamine amidotransferase domain
Back Show alignment and domain information
Score = 101 bits (253), Expect = 3e-29
Identities = 31/60 (51%), Positives = 42/60 (70%), Gaps = 2/60 (3%)
Query: 48 HQRLAIVDPTSGDQPLYNEDKTVVVTVNGEIYNHKQLREQL--KNHQFRTGSDCEVIAHL 105
H+RL+I D G QP+ +ED V+ NGEIYN+++LR +L K ++FRT SD EVI HL
Sbjct: 1 HRRLSIDDSEGGAQPMVSEDGRYVIVFNGEIYNYRELRAELEAKGYRFRTHSDTEVILHL 60
This domain is a class-II glutamine amidotransferase domain found in a variety of enzymes such as asparagine synthetase and glutamine-fructose-6-phosphate transaminase. Length = 120
>gnl|CDD|238212 cd00352, Gn_AT_II, Glutamine amidotransferases class-II (GATase)
Back Show alignment and domain information
Score = 97.1 bits (242), Expect = 1e-26
Identities = 39/135 (28%), Positives = 55/135 (40%), Gaps = 31/135 (22%)
Query: 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGL----------------------- 38
CGI + G + ++ L HRGPD +G+
Sbjct: 1 CGIFGIVGADGAASLLLLLLLRGLAALEHRGPDGAGIAVYDGDGLFVEKRAGPVSDVALD 60
Query: 39 ----HYHGDCYLAHQRLAIVDPTS--GDQPLYNEDKTVVVTVNGEIYNHKQLREQLKN-- 90
L H RLA S QP +ED + + NGEIYN+++LRE+L+
Sbjct: 61 LLDEPLKSGVALGHVRLATNGLPSEANAQPFRSEDGRIALVHNGEIYNYRELREELEARG 120
Query: 91 HQFRTGSDCEVIAHL 105
++F SD EVI HL
Sbjct: 121 YRFEGESDSEVILHL 135
The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the formation of the beta-lactam ring in the beta-lactamase inhibitor clavulanic acid. GltS synthesizes L-glutamate from 2-oxoglutarate and L-glutamine. These enzymes are generally dimers, but GPATase also exists as a homotetramer. Length = 220
>gnl|CDD|222195 pfam13522, GATase_6, Glutamine amidotransferase domain
Back Show alignment and domain information
Score = 94.3 bits (235), Expect = 2e-26
Identities = 38/76 (50%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Query: 33 PDWSGLHYHGDCYLAHQRLAIVD-PTSGDQPLYNEDKTVVVTVNGEIYNHKQLREQL--K 89
PD+SGL G L H RLAIVD +G QP+ + D +V+ NGEIYN +LRE+L K
Sbjct: 1 PDFSGLWVDGGIALGHVRLAIVDLSEAGAQPMLSADGRLVLVHNGEIYNFGELREELPAK 60
Query: 90 NHQFRTGSDCEVIAHL 105
H FR+ SD EV+ L
Sbjct: 61 GHAFRSRSDSEVLLAL 76
This domain is a class-II glutamine amidotransferase domain found in a variety of enzymes, such as asparagine synthetase and glutamine--fructose-6-phosphate transaminase. Length = 130
>gnl|CDD|234108 TIGR03104, trio_amidotrans, asparagine synthase family amidotransferase
Back Show alignment and domain information
Score = 77.8 bits (192), Expect = 3e-18
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 4/105 (3%)
Query: 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHGDCYLAHQRLAIVDPT-SG 59
MCGI D + ++ + L RGPD G+H G L H+RL I+D + +
Sbjct: 1 MCGICGEIR-FDGQAPDVAAVVRMLAVLAPRGPDAGGVHAQGPVALGHRRLKIIDLSEAS 59
Query: 60 DQPLYNEDKTVVVTVNGEIYNHKQLREQL--KNHQFRTGSDCEVI 102
QP+ + + + + NG IYN+++LR +L ++F + D EVI
Sbjct: 60 QQPMVDPELGLALVFNGCIYNYRELRAELEALGYRFFSDGDTEVI 104
Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases. Length = 589
>gnl|CDD|215851 pfam00310, GATase_2, Glutamine amidotransferases class-II
Back Show alignment and domain information
Score = 68.1 bits (167), Expect = 2e-15
Identities = 32/152 (21%), Positives = 45/152 (29%), Gaps = 50/152 (32%)
Query: 2 CGILAVFGCIDN--SQAKRSRIIELSRRLRHRGP------DWSGLH----------YHGD 43
CGIL I S +E RL HRG D +G+
Sbjct: 1 CGILGFIAHIKGKASHDVVEDALEALERLEHRGGVGADGNDGAGILTQIPDGFGAPSERR 60
Query: 44 CYLAHQRLAIVD----------------------PTSG------DQPLYNEDKTVVVTVN 75
++ +R T+G P E V+ N
Sbjct: 61 LFVIRKRGEKSIVAEFYLQDERFKSALAIVHTRFSTNGFPSWENAHPFRRE--GWVLAHN 118
Query: 76 GEIYNHKQLREQLKN--HQFRTGSDCEVIAHL 105
GEI + LR ++ F +GSD E +L
Sbjct: 119 GEINTLRGLRNWMRAREGVFNSGSDSEAFDNL 150
>gnl|CDD|223526 COG0449, GlmS, Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Back Show alignment and domain information
Score = 56.0 bits (136), Expect = 1e-10
Identities = 40/141 (28%), Positives = 54/141 (38%), Gaps = 46/141 (32%)
Query: 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHGDCYL-------------- 46
MCGI G I + ++E +RL +RG D +G+ GD L
Sbjct: 1 MCGI---VGYIGFLREAIDILLEGLKRLEYRGYDSAGIAVVGDGSLNVRKQVGKISNLEE 57
Query: 47 -------------AHQRLAIVDPTSGDQPLYNE-------DKTVVVTVNGEIYNHKQLRE 86
AH R A T G D V NG I N +L+E
Sbjct: 58 LLNKEPLIGGVGIAHTRWA----THGG---PTRANAHPHSDGEFAVVHNGIIENFAELKE 110
Query: 87 QL--KNHQFRTGSDCEVIAHL 105
+L K + F++ +D EVIAHL
Sbjct: 111 ELEAKGYVFKSDTDTEVIAHL 131
>gnl|CDD|239735 cd03766, Gn_AT_II_novel, Gn_AT_II_novel
Back Show alignment and domain information
Score = 51.1 bits (123), Expect = 3e-09
Identities = 30/113 (26%), Positives = 39/113 (34%), Gaps = 20/113 (17%)
Query: 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYH--GDCYLA------HQRLA 52
MCGIL EL LR+RGPD+ + L R
Sbjct: 1 MCGILCSVSPSGPHINSSLLSEELLPNLRNRGPDYLSTRQLSVTNWTLLFTSSVLSLRGD 60
Query: 53 IVDPTSGDQPLYNEDKTVVVTVNGEIYNHKQLREQLKNHQFRTGSDCEVIAHL 105
V QPL ++ V+ NGE+YN + +D EVI L
Sbjct: 61 HVTR----QPLVDQSTGNVLQWNGELYN--------IDGVEDEENDTEVIFEL 101
This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the formation of the beta-lactam ring in the beta-lactamase inhibitor clavulanic acid. GltS synthesizes L-glutamate from 2-oxoglutarate and L-glutamine. These enzymes are generally dimers, but GPATase also exists as a homotetramer. Length = 181
>gnl|CDD|238366 cd00714, GFAT, Glutamine amidotransferases class-II (Gn-AT)_GFAT-type
Back Show alignment and domain information
Score = 49.4 bits (119), Expect = 2e-08
Identities = 40/139 (28%), Positives = 58/139 (41%), Gaps = 43/139 (30%)
Query: 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHGDCYL--------------- 46
CGI G I +A ++E +RL +RG D +G+ GD L
Sbjct: 1 CGI---VGYIGKREAV-DILLEGLKRLEYRGYDSAGIAVIGDGSLEVVKAVGKVANLEEK 56
Query: 47 ------------AHQRLAIVDPTSGD------QPLYNEDKTVVVTVNGEIYNHKQLREQL 88
H R A T G+ P + D + V NG I N+ +L+E+L
Sbjct: 57 LAEKPLSGHVGIGHTRWA----THGEPTDVNAHPHRSCDGEIAVVHNGIIENYAELKEEL 112
Query: 89 --KNHQFRTGSDCEVIAHL 105
K ++F + +D EVIAHL
Sbjct: 113 EAKGYKFESETDTEVIAHL 131
This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin. Length = 215
>gnl|CDD|130205 TIGR01135, glmS, glucosamine--fructose-6-phosphate aminotransferase (isomerizing)
Back Show alignment and domain information
Score = 48.8 bits (117), Expect = 5e-08
Identities = 39/139 (28%), Positives = 54/139 (38%), Gaps = 43/139 (30%)
Query: 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGL----------------------- 38
CGI G I A ++E +RL +RG D +G+
Sbjct: 1 CGI---VGYIGQRDAVPI-LLEGLKRLEYRGYDSAGIAVVDEGKLFVRKAVGKVQELANK 56
Query: 39 ----HYHGDCYLAHQRLAIVDPTSGD------QPLYNEDKTVVVTVNGEIYNHKQLREQL 88
G + H R A T G P +E + V NG I N+ +LRE+L
Sbjct: 57 LGEKPLPGGVGIGHTRWA----THGKPTEENAHPHTDEGGRIAVVHNGIIENYAELREEL 112
Query: 89 KN--HQFRTGSDCEVIAHL 105
+ H F + +D EVIAHL
Sbjct: 113 EARGHVFVSDTDTEVIAHL 131
The member from Methanococcus jannaschii contains an intein [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Central intermediary metabolism, Amino sugars]. Length = 607
>gnl|CDD|223112 COG0034, PurF, Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Back Show alignment and domain information
Score = 48.4 bits (116), Expect = 6e-08
Identities = 35/139 (25%), Positives = 54/139 (38%), Gaps = 36/139 (25%)
Query: 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSG--------LHYHGDCYLAHQ--- 49
MCG+ ++G DN+ A+ L+HRG + +G H H L
Sbjct: 4 MCGVFGIWGHKDNNAAQL--TYYGLYALQHRGQEAAGIAVADGKRFHTHKGMGLVSDVFN 61
Query: 50 ----------RLAIVD---PTSGD------QPLY--NEDKTVVVTVNGEIYNHKQLREQL 88
+ I T+G QP Y + + + NG + N ++LR +L
Sbjct: 62 ERDLLRKLQGNVGIGHVRYSTAGSSSIENAQPFYVNSPGGGIALAHNGNLVNAEELRREL 121
Query: 89 KN--HQFRTGSDCEVIAHL 105
+ F T SD EV+ HL
Sbjct: 122 EEEGAIFNTTSDSEVLLHL 140
>gnl|CDD|234729 PRK00331, PRK00331, glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Back Show alignment and domain information
Score = 47.7 bits (115), Expect = 1e-07
Identities = 38/140 (27%), Positives = 55/140 (39%), Gaps = 43/140 (30%)
Query: 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGL---------------------- 38
MCGI G + A ++E +RL +RG D +G+
Sbjct: 1 MCGI---VGYVGQRNAA-EILLEGLKRLEYRGYDSAGIAVLDDGGLEVRKAVGKVANLEA 56
Query: 39 -----HYHGDCYLAHQRLAIVDPTSGD------QPLYNEDKTVVVTVNGEIYNHKQLREQ 87
G + H R A T G P + + V NG I N+ +L+E+
Sbjct: 57 KLEEEPLPGTTGIGHTRWA----THGKPTERNAHPHTDCSGRIAVVHNGIIENYAELKEE 112
Query: 88 L--KNHQFRTGSDCEVIAHL 105
L K H F++ +D EVIAHL
Sbjct: 113 LLAKGHVFKSETDTEVIAHL 132
>gnl|CDD|215241 PLN02440, PLN02440, amidophosphoribosyltransferase
Back Show alignment and domain information
Score = 47.0 bits (112), Expect = 2e-07
Identities = 36/143 (25%), Positives = 56/143 (39%), Gaps = 47/143 (32%)
Query: 1 MCGILAVFGCIDNSQAKRSRIIELS-RRLRHRGPD--------WSGLHYH---------- 41
CG++ +FG + +A SR+ L L+HRG + + L
Sbjct: 1 ECGVVGIFG---DPEA--SRLCYLGLHALQHRGQEGAGIVTVDGNRLQSITGNGLVSDVF 55
Query: 42 ---------GDCYLAHQRLAIVDPTSGD------QPLYNEDK--TVVVTVNGEIYNHKQL 84
GD + H R T+G QP + ++ V NG + N+++L
Sbjct: 56 DESKLDQLPGDIAIGHVRY----STAGASSLKNVQPFVANYRFGSIGVAHNGNLVNYEEL 111
Query: 85 REQL--KNHQFRTGSDCEVIAHL 105
R +L F T SD EV+ HL
Sbjct: 112 RAKLEENGSIFNTSSDTEVLLHL 134
>gnl|CDD|238367 cd00715, GPATase_N, Glutamine amidotransferases class-II (GN-AT)_GPAT- type
Back Show alignment and domain information
Score = 43.6 bits (104), Expect = 3e-06
Identities = 39/142 (27%), Positives = 54/142 (38%), Gaps = 47/142 (33%)
Query: 2 CGILAVFGCIDNSQAKRSRIIELS-RRLRHRGPDWSG--------LHYH----------- 41
CG VFG A +R+ L L+HRG + +G H H
Sbjct: 1 CG---VFGIYGAEDA--ARLTYLGLYALQHRGQESAGIATSDGKRFHTHKGMGLVSDVFD 55
Query: 42 --------GDCYLAHQRLAIVDPTSGD------QPLYNEDKTVVVTV--NGEIYNHKQLR 85
G+ + H R T+G QP + + NG + N K+LR
Sbjct: 56 EEKLRRLPGNIAIGHVRY----STAGSSSLENAQPFVVNSPLGGIALAHNGNLVNAKELR 111
Query: 86 EQLKNHQ--FRTGSDCEVIAHL 105
E+L+ F+T SD EVI HL
Sbjct: 112 EELEEEGRIFQTTSDSEVILHL 133
This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer. Length = 252
>gnl|CDD|233285 TIGR01134, purF, amidophosphoribosyltransferase
Back Show alignment and domain information
Score = 41.5 bits (98), Expect = 2e-05
Identities = 33/136 (24%), Positives = 50/136 (36%), Gaps = 35/136 (25%)
Query: 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLH-YHGDCYLAHQRLAIVD----- 55
CG V G + S L+HRG + +G+ G+ H+ +V
Sbjct: 1 CG---VVGIYSQEEDAASLTYYGLYALQHRGQEAAGIAVSDGNKIRTHKGNGLVSDVFDE 57
Query: 56 -----------------PTSGD------QPLY-NEDKTVVVTVNGEIYNHKQLREQLKN- 90
T+G QP N + + NG + N ++LRE+L+
Sbjct: 58 RHLERLKGNVGIGHVRYSTAGSSSLSNAQPFVVNSPGGIALAHNGNLVNAEELREELEEE 117
Query: 91 -HQFRTGSDCEVIAHL 105
F T SD EV+ HL
Sbjct: 118 GRIFNTTSDSEVLLHL 133
Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]. Length = 442
>gnl|CDD|215531 PLN02981, PLN02981, glucosamine:fructose-6-phosphate aminotransferase
Back Show alignment and domain information
Score = 38.2 bits (89), Expect = 2e-04
Identities = 40/157 (25%), Positives = 56/157 (35%), Gaps = 55/157 (35%)
Query: 1 MCGILAVFGCIDNSQAKRSRIIELS----RRLRHRGPDWSGLHY---------------- 40
MCGI A N +R I+E+ RRL +RG D +G+
Sbjct: 1 MCGIFAYLNY--NVPRERRFILEVLFNGLRRLEYRGYDSAGIAIDNDPSLESSSPLVFRE 58
Query: 41 --------------------HGD------CYLAHQRLAIVDP----TSGDQPLYNEDKTV 70
+ D +AH R A P S Q ++ +
Sbjct: 59 EGKIESLVRSVYEEVAETDLNLDLVFENHAGIAHTRWATHGPPAPRNSHPQSSGPGNEFL 118
Query: 71 VVTVNGEIYNHKQLREQLKNH--QFRTGSDCEVIAHL 105
VV NG I N++ L+E L H F + +D EVI L
Sbjct: 119 VVH-NGIITNYEVLKETLLRHGFTFESDTDTEVIPKL 154
>gnl|CDD|238888 cd01907, GlxB, Glutamine amidotransferases class-II (Gn-AT)_GlxB-type
Back Show alignment and domain information
Score = 36.9 bits (86), Expect = 7e-04
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 40 YHGDCYLAHQRLAIVDP--TSGDQPLYNEDKTVVVTVNGEIYNHKQLREQLKNH--QFRT 95
Y G ++AH R G P D VV NGEI N+ RE L+ +F T
Sbjct: 75 YKGYHWIAHTRQPTNSAVWWYGAHPFSIGDIAVVH--NGEISNYGSNREYLERFGYKFET 132
Query: 96 GSDCEVIAHL 105
+D EVIA+
Sbjct: 133 ETDTEVIAYY 142
GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits. Length = 249
>gnl|CDD|181061 PRK07631, PRK07631, amidophosphoribosyltransferase; Provisional
Back Show alignment and domain information
Score = 36.7 bits (85), Expect = 8e-04
Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 37/137 (27%)
Query: 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGL-HYHGDCYLAHQRLAIVD----- 55
CG+ ++G + +Q + L+HRG + +G+ G AH+ L +V
Sbjct: 12 CGVFGIWGHEEAAQITYYGL----HSLQHRGQEGAGIVVTDGGKLSAHKGLGLVTEVFQN 67
Query: 56 -----------------PTSGD------QPLY--NEDKTVVVTVNGEIYNHKQLREQLKN 90
T+G QPL ++ ++ + NG + N QL+ QL+N
Sbjct: 68 GELDALKGKAAIGHVRYATAGGGGYENVQPLLFRSQTGSLALAHNGNLVNATQLKLQLEN 127
Query: 91 HQ--FRTGSDCEVIAHL 105
F+T SD EV+AHL
Sbjct: 128 QGSIFQTTSDTEVLAHL 144
>gnl|CDD|236384 PRK09123, PRK09123, amidophosphoribosyltransferase; Provisional
Back Show alignment and domain information
Score = 36.0 bits (84), Expect = 0.001
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 14/74 (18%)
Query: 42 GDCYLAHQRLAIVDPTSGD------QPLYNEDKT--VVVTVNGEIYNHKQLREQL--KNH 91
G+ + H R + T+G+ QPL+ E + + + NG + N LR +L +
Sbjct: 86 GNRAIGHVRYS----TTGETILRNVQPLFAELEFGGLAIAHNGNLTNALTLRRELIRRGA 141
Query: 92 QFRTGSDCEVIAHL 105
F++ SD EVI HL
Sbjct: 142 IFQSTSDTEVILHL 155
>gnl|CDD|235611 PRK05793, PRK05793, amidophosphoribosyltransferase; Provisional
Back Show alignment and domain information
Score = 35.4 bits (82), Expect = 0.002
Identities = 33/142 (23%), Positives = 53/142 (37%), Gaps = 45/142 (31%)
Query: 2 CGILAVFGCIDNSQAKRSRIIELS-RRLRHRGPDWSG--------LHYH----------- 41
CG VFG + + + L+HRG + +G + H
Sbjct: 15 CG---VFGVFSKNNIDVASLTYYGLYALQHRGQESAGIAVSDGEKIKVHKGMGLVSEVFS 71
Query: 42 --------GDCYLAHQRLAIVDPTSGD------QPLYNEDK--TVVVTVNGEIYNHKQLR 85
G+ + H R + T+G QPL K ++ + NG + N +R
Sbjct: 72 KEKLKGLKGNSAIGHVRYS----TTGASDLDNAQPLVANYKLGSIAIAHNGNLVNADVIR 127
Query: 86 EQLKN--HQFRTGSDCEVIAHL 105
E L++ F+T D EVI +L
Sbjct: 128 ELLEDGGRIFQTSIDSEVILNL 149
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
105
PRK09431 554
asnB asparagine synthetase B; Provisional
99.97 PTZ00077 586
asparagine synthetase-like protein; Provisional
99.97 PLN02549 578
asparagine synthase (glutamine-hydrolyzing)
99.97 TIGR03104 589
trio_amidotrans asparagine synthase family amidotr
99.97 COG0367 542
AsnB Asparagine synthase (glutamine-hydrolyzing) [
99.97 TIGR03108 628
eps_aminotran_1 exosortase 1 system-associated ami
99.97 PRK08525 445
amidophosphoribosyltransferase; Provisional
99.97 cd00714 215
GFAT Glutamine amidotransferases class-II (Gn-AT)_
99.96 PRK07272 484
amidophosphoribosyltransferase; Provisional
99.96 PRK07349 500
amidophosphoribosyltransferase; Provisional
99.96 PRK06388 474
amidophosphoribosyltransferase; Provisional
99.96 PRK08341 442
amidophosphoribosyltransferase; Provisional
99.96 PRK07631 475
amidophosphoribosyltransferase; Provisional
99.96 PRK09123 479
amidophosphoribosyltransferase; Provisional
99.96 PRK06781 471
amidophosphoribosyltransferase; Provisional
99.95 PRK00331 604
glucosamine--fructose-6-phosphate aminotransferase
99.95 PRK09246 501
amidophosphoribosyltransferase; Provisional
99.95 cd00712 220
AsnB Glutamine amidotransferases class-II (GATase)
99.95 cd03766 181
Gn_AT_II_novel Gn_AT_II_novel. This asparagine syn
99.95 PTZ00295 640
glucosamine-fructose-6-phosphate aminotransferase;
99.95 PLN02440 479
amidophosphoribosyltransferase
99.95 PRK05793 469
amidophosphoribosyltransferase; Provisional
99.95 TIGR01536 467
asn_synth_AEB asparagine synthase (glutamine-hydro
99.95 PRK07847 510
amidophosphoribosyltransferase; Provisional
99.95 PTZ00394 670
glucosamine-fructose-6-phosphate aminotransferase;
99.95 cd01907 249
GlxB Glutamine amidotransferases class-II (Gn-AT)_
99.95 PLN02981 680
glucosamine:fructose-6-phosphate aminotransferase
99.94 TIGR01135 607
glmS glucosamine--fructose-6-phosphate aminotransf
99.94 COG0449 597
GlmS Glucosamine 6-phosphate synthetase, contains
99.94 COG0034 470
PurF Glutamine phosphoribosylpyrophosphate amidotr
99.93 cd00715 252
GPATase_N Glutamine amidotransferases class-II (GN
99.93 TIGR01134 442
purF amidophosphoribosyltransferase. Alternate nam
99.93 KOG0572 474
consensus Glutamine phosphoribosylpyrophosphate am
99.91 KOG0571 543
consensus Asparagine synthase (glutamine-hydrolyzi
99.9 cd00352 220
Gn_AT_II Glutamine amidotransferases class-II (GAT
99.9 KOG1268 670
consensus Glucosamine 6-phosphate synthetases, con
99.88 PF13522 133
GATase_6: Glutamine amidotransferase domain
99.79 TIGR03442 251
conserved hypothetical protein TIGR03442. Members
99.67 PF13537 125
GATase_7: Glutamine amidotransferase domain; PDB:
99.58 cd01908 257
YafJ Glutamine amidotransferases class-II (Gn-AT)_
99.53 PF00310 361
GATase_2: Glutamine amidotransferases class-II; In
99.45 COG0067 371
GltB Glutamate synthase domain 1 [Amino acid trans
99.2 cd01909 199
betaLS_CarA_N Glutamine amidotransferases class-II
99.2 PF13230 271
GATase_4: Glutamine amidotransferases class-II; PD
99.1 KOG0573 520
consensus Asparagine synthase [Amino acid transpor
99.1 cd01910 224
Wali7 This domain is present in Wali7, a protein o
98.64 cd00713 413
GltS Glutamine amidotransferases class-II (Gn-AT),
98.54 COG0121 252
Predicted glutamine amidotransferase [General func
98.29 PRK11750 1485
gltB glutamate synthase subunit alpha; Provisional
94.43 TIGR03823 168
FliZ flagellar regulatory protein FliZ. FliZ is in
83.34 PRK11582 169
flagella biosynthesis protein FliZ; Provisional
83.26
>PRK09431 asnB asparagine synthetase B; Provisional
Back Hide alignment and domain information
Probab=99.97 E-value=1.3e-31 Score=198.60 Aligned_cols=105 Identities=52% Similarity=0.938 Sum_probs=93.7
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeCCceEeeeeeeeeCCCCCCCCeecCCCcEEEEEceeEcC
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHGDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNGEIYN 80 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~~~~l~~~rl~~~~~~~~~QP~~~~~~~~~l~~nGeI~N 80 (105)
||||+|+++...........+.+|+.+|+|||||++|+|..++++|||+||+++|+..+.||+.+.++.++++|||||||
T Consensus 1 MCGI~g~~~~~~~~~~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~lgh~RLsIid~~~g~QP~~~~~~~~~lv~NGEIyN 80 (554)
T PRK09431 1 MCGIFGILDIKTDADELRKKALEMSRLMRHRGPDWSGIYASDNAILGHERLSIVDVNGGAQPLYNEDGTHVLAVNGEIYN 80 (554)
T ss_pred CceEEEEEcCCCcchhHHHHHHHHHHHhhCCCCCcCCEEEeCCeEEEEEEeeecCCCCCCCCCCcCCCCEEEEEEEEEec
Confidence 99999999754322112467899999999999999999999999999999999999889999988888999999999999
Q ss_pred hHHHHHHhc-CCCcccCChhhhhccC
Q 037758 81 HKQLREQLK-NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 81 ~~~L~~~l~-g~~~~~~sD~evil~~ 105 (105)
+.+|+++|. .+.|++.||+|||+++
T Consensus 81 ~~eLr~~L~~~~~f~t~sD~Evil~l 106 (554)
T PRK09431 81 HQELRAELGDKYAFQTGSDCEVILAL 106 (554)
T ss_pred HHHHHHHHhccCCcCCCCHHHHHHHH
Confidence 999999997 6889999999999874
>PTZ00077 asparagine synthetase-like protein; Provisional
Back Show alignment and domain information
Probab=99.97 E-value=1.3e-31 Score=199.58 Aligned_cols=105 Identities=52% Similarity=0.922 Sum_probs=92.0
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEe-----CCceEeeeeeeeeCCCCCCCCeecCCCcEEEEEc
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYH-----GDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVN 75 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~-----~~~~l~~~rl~~~~~~~~~QP~~~~~~~~~l~~n 75 (105)
||||+|+++...........+.+|+.+|+|||||++|+|.. ++++|||.||+++|...+.||+.+.+++++++||
T Consensus 1 MCGI~gi~~~~~~~~~~~~~~~~m~~~l~HRGPD~~g~~~~~~~~~~~~~lgh~RLsIvd~~~g~QP~~~~d~~~~lv~N 80 (586)
T PTZ00077 1 MCGILAIFNSKGERHELRRKALELSKRLRHRGPDWSGIIVLENSPGTYNILAHERLAIVDLSDGKQPLLDDDETVALMQN 80 (586)
T ss_pred CceEEEEEecCCchhhHHHHHHHHHHHHhCCCCCcCCEEEeccCCCCcEEEEeccceecCCCCCCCCcCCCCCCEEEEEE
Confidence 99999999754322222356788999999999999999986 5689999999999988899999988889999999
Q ss_pred eeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 76 GEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 76 GeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
|||||+.+|+++|. |+.|++.||+|||+++
T Consensus 81 GEIYN~~eLr~~L~~~g~~f~t~sD~Evil~l 112 (586)
T PTZ00077 81 GEIYNHWEIRPELEKEGYKFSSNSDCEIIGHL 112 (586)
T ss_pred EEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHH
Confidence 99999999999996 8999999999999874
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Back Show alignment and domain information
Probab=99.97 E-value=5.2e-31 Score=196.00 Aligned_cols=105 Identities=83% Similarity=1.362 Sum_probs=93.1
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeCCceEeeeeeeeeCCCCCCCCeecCCCcEEEEEceeEcC
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHGDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNGEIYN 80 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~~~~l~~~rl~~~~~~~~~QP~~~~~~~~~l~~nGeI~N 80 (105)
||||+|+++.+.........+.+|+.+|+|||||++|+|..++.+|+|.||++.+...+.||+.+.++.++++|||||||
T Consensus 1 MCGI~g~~~~~~~~~~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~Lgh~RLsI~d~~~g~QP~~~~~~~~~lv~NGEIyN 80 (578)
T PLN02549 1 MCGILAVLGCSDDSQAKRSRVLELSRRLRHRGPDWSGLYGNEDCYLAHERLAIMDPESGDQPLYNEDKTIVVTANGEIYN 80 (578)
T ss_pred CCcEEEEEeCCCCcchhHHHHHHHHHHhcCcCCCccCEEEeCCeEEEEeeeeEeCCCCCCCCcCcCCCCEEEEEEEEEEc
Confidence 99999999754322223466889999999999999999999999999999999998889999988888899999999999
Q ss_pred hHHHHHHhcCCCcccCChhhhhccC
Q 037758 81 HKQLREQLKNHQFRTGSDCEVIAHL 105 (105)
Q Consensus 81 ~~~L~~~l~g~~~~~~sD~evil~~ 105 (105)
+.+|+++|..+.|+|.||+|||+++
T Consensus 81 ~~eLr~~L~~~~f~t~sD~Evil~l 105 (578)
T PLN02549 81 HKELREKLKLHKFRTGSDCEVIAHL 105 (578)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 9999999966789999999999874
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase
Back Show alignment and domain information
Probab=99.97 E-value=7.8e-31 Score=195.81 Aligned_cols=104 Identities=32% Similarity=0.563 Sum_probs=92.9
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeCCceEeeeeeeeeCCC-CCCCCeecCCCcEEEEEceeEc
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHGDCYLAHQRLAIVDPT-SGDQPLYNEDKTVVVTVNGEIY 79 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~~~~l~~~rl~~~~~~-~~~QP~~~~~~~~~l~~nGeI~ 79 (105)
||||+|++..+... .....+.+|+.+|+|||||++|+|..+++++||+||++.+.+ .+.||+.+++++++++||||||
T Consensus 1 McGI~G~~~~~~~~-~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~lgh~rl~i~~~~~~~~QP~~~~~~~~~~v~nGeiy 79 (589)
T TIGR03104 1 MCGICGEIRFDGQA-PDVAAVVRMLAVLAPRGPDAGGVHAQGPVALGHRRLKIIDLSEASQQPMVDAELGLALVFNGCIY 79 (589)
T ss_pred CcEEEEEEecCCCc-chHHHHHHHHHhhcCCCCCcCCcEecCCEEEEEEeeEecCCCcCCCCCeECCCCCEEEEECCEec
Confidence 99999999654322 234678999999999999999999999999999999999985 7899999888889999999999
Q ss_pred ChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 80 NHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 80 N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
|+.||+++|. |+.|++.||+||++++
T Consensus 80 N~~eL~~~l~~~g~~f~~~sD~Evil~~ 107 (589)
T TIGR03104 80 NYRELRAELEALGYRFFSDGDTEVILKA 107 (589)
T ss_pred CHHHHHHHHHhcCCcccCCCHHHHHHHH
Confidence 9999999997 8999999999999863
Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Back Show alignment and domain information
Probab=99.97 E-value=3.9e-31 Score=195.65 Aligned_cols=104 Identities=43% Similarity=0.685 Sum_probs=94.7
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeCCceEeeeeeeeeCCCCCCCCeecCCCcEEEEEceeEcC
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHGDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNGEIYN 80 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~~~~l~~~rl~~~~~~~~~QP~~~~~~~~~l~~nGeI~N 80 (105)
||||+|+++.++ .......+.+|..+|.|||||.+|+|...++.+||.||++++...+.||+....++++++|||||||
T Consensus 1 MCGI~g~~~~~~-~~~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~~gh~rL~i~d~~~g~QP~~~~~~~~~l~~NGEIYN 79 (542)
T COG0367 1 MCGIAGILNFKN-LIDAKSIIEEMTKLLRHRGPDDSGVWISLNALLGHRRLSIVDLSGGRQPMIKEGGKYAIVYNGEIYN 79 (542)
T ss_pred CCceeeeecccc-cccchHHHHHHHHHhhccCCCccccEecCCceeeeeEEEEeccccCCCCcccCCCcEEEEECCEeee
Confidence 999999999752 2223678999999999999999999999999999999999999989999988667799999999999
Q ss_pred hHHHHHHhc--CCCcccCChhhhhccC
Q 037758 81 HKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 81 ~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
+.|||++|. |+.|.|.||+|||+++
T Consensus 80 ~~elr~~l~~~g~~f~t~sDtEvil~~ 106 (542)
T COG0367 80 VEELRKELREAGYEFRTYSDTEVILTL 106 (542)
T ss_pred HHHHHHHHHhcCceeccccchHHHHHH
Confidence 999999998 9999999999999863
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1
Back Show alignment and domain information
Probab=99.97 E-value=1.4e-30 Score=195.53 Aligned_cols=105 Identities=45% Similarity=0.751 Sum_probs=93.0
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeCCceEeeeeeeeeCCCCCCCCeecCCCcEEEEEceeEcC
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHGDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNGEIYN 80 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~~~~l~~~rl~~~~~~~~~QP~~~~~~~~~l~~nGeI~N 80 (105)
||||+|++..+.........+.+|+.+|+|||||++|+|..++++|||+||++.+...+.||+.+.+++++++|||||||
T Consensus 1 McGI~G~~~~~~~~~~~~~~~~~m~~~l~hRGpD~~g~~~~~~~~lgh~rl~i~d~~~~~qP~~~~~~~~~lv~nGei~N 80 (628)
T TIGR03108 1 MCGITGIFDLTGQRPIDRDLLRRMNDAQAHRGPDGGGVHVEPGIGLGHRRLSIIDLSGGQQPLFNEDGSVVVVFNGEIYN 80 (628)
T ss_pred CCEEEEEEECCCCccccHHHHHHHHHHhcCCCCCccCeEeeCCEEEEEEeeeecCCCCCCCCcCcCCCCEEEEECCeECC
Confidence 99999999654221123466899999999999999999999999999999999998778999998888999999999999
Q ss_pred hHHHHHHhc--CCCcccCChhhhhccC
Q 037758 81 HKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 81 ~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
+.||+++|. |+.|++.||+||++++
T Consensus 81 ~~eL~~~l~~~g~~~~~~sD~Evi~~~ 107 (628)
T TIGR03108 81 FQELVAELQALGHVFRTRSDTEVIVHA 107 (628)
T ss_pred HHHHHHHHHhcCCccCCCChHHHHHHH
Confidence 999999997 8999999999999863
The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
>PRK08525 amidophosphoribosyltransferase; Provisional
Back Show alignment and domain information
Probab=99.97 E-value=1.7e-30 Score=188.63 Aligned_cols=101 Identities=24% Similarity=0.434 Sum_probs=88.3
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeC---------------------------CceEeeeeeee
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHG---------------------------DCYLAHQRLAI 53 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~---------------------------~~~l~~~rl~~ 53 (105)
||||+|+++..+ ....+..|+.+|+|||||++|+++.+ ++++||+||++
T Consensus 1 MCGI~G~~~~~~----~~~~~~~~L~~LqhRG~DsaGia~~~~~~~~~~k~~G~v~~~f~~~~~~~~~g~~~iGH~R~at 76 (445)
T PRK08525 1 MCAVVGVINSKN----AAKLAYYALFAMQHRGQEASGISVSNGKKIKTIKGRGLVTQVFNEDNLKTLKGEIAIGHNRYST 76 (445)
T ss_pred CceEEEEEcCcc----HHHHHHHHHHHhhCcCcccceEEEEeCCEEEEEEcCcchhhccchhhhhccCCcEEEeeccccc
Confidence 999999998642 34667789999999999999998843 36899999999
Q ss_pred eCCC--CCCCCeec--CCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 54 VDPT--SGDQPLYN--EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 54 ~~~~--~~~QP~~~--~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
.|.. .+.||+.+ ..++++++|||+|||+.+||++|. |+.|+|+||+|||+++
T Consensus 77 ~g~~~~~naqP~~~~~~~g~~~lvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvi~~l 134 (445)
T PRK08525 77 AGNDSILDAQPVFARYDLGEIAIVHNGNLVNKKEVRSRLIQDGAIFQTNMDTENLIHL 134 (445)
T ss_pred CCCCCCCCCCCeEeecCCCCEEEEEEEEEECHHHHHHHHHhcCCcCCCCCHHHHHHHH
Confidence 9964 68999986 567899999999999999999997 8999999999999874
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type
Back Show alignment and domain information
Probab=99.96 E-value=8.2e-30 Score=170.28 Aligned_cols=100 Identities=33% Similarity=0.482 Sum_probs=87.4
Q ss_pred eEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEe---------------------------CCceEeeeeeeee
Q 037758 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYH---------------------------GDCYLAHQRLAIV 54 (105)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~---------------------------~~~~l~~~rl~~~ 54 (105)
|||+|+++... ....+..|+.+|+|||||++|+++. +.+++||+|+++.
T Consensus 1 CGI~G~~~~~~----~~~~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at~ 76 (215)
T cd00714 1 CGIVGYIGKRE----AVDILLEGLKRLEYRGYDSAGIAVIGDGSLEVVKAVGKVANLEEKLAEKPLSGHVGIGHTRWATH 76 (215)
T ss_pred CEEEEEEcCcc----HHHHHHHHHHHHhccCcCcceEEEEeCCEEEEEEcCccHHHHHHHhhhccCCccEEEEEEEccCC
Confidence 99999998532 2367889999999999999999986 3468999999999
Q ss_pred CCC--CCCCCeecCCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 55 DPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 55 ~~~--~~~QP~~~~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
+.. .+.|||...+++++++|||+|||+.+|+++|. |+.+++.||+|+++++
T Consensus 77 g~~~~~n~qPf~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~sDsEvi~~l 131 (215)
T cd00714 77 GEPTDVNAHPHRSCDGEIAVVHNGIIENYAELKEELEAKGYKFESETDTEVIAHL 131 (215)
T ss_pred CCCCccCCCCCCcCCCCEEEEEeEEEcCHHHHHHHHHhcCCcccCCCHHHHHHHH
Confidence 974 58899987667899999999999999999997 8999999999999864
This domain is found at the N-terminus of glucosamine-6P synthase (GlmS, or GFAT in humans). The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. In humans, GFAT catalyzes the first and rate-limiting step of hexosamine metabolism, the conversion of D-fructose-6P (Fru6P) into D-glucosamine-6P using L-glutamine as a nitrogen source. The end product of this pathway, UDP-N-acetyl glucosamine, is a major building block of the bacterial peptidoglycan and fungal chitin.
>PRK07272 amidophosphoribosyltransferase; Provisional
Back Show alignment and domain information
Probab=99.96 E-value=1.5e-29 Score=184.67 Aligned_cols=101 Identities=27% Similarity=0.447 Sum_probs=88.1
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeC----------------------------CceEeeeeee
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHG----------------------------DCYLAHQRLA 52 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~----------------------------~~~l~~~rl~ 52 (105)
||||+|+++..+ ....+..++.+|+|||||++|+++.+ ++++||+||+
T Consensus 11 mCGI~Gi~~~~~----~~~~~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~l~~l~G~~~IGH~Rys 86 (484)
T PRK07272 11 ECGVFGIWGHPD----AAQLTYFGLHSLQHRGQEGAGIVSNDNGKLKGHRDLGLLSEVFKDPADLDKLTGQAAIGHVRYA 86 (484)
T ss_pred cCeEEEEECCcc----HHHHHHHHHHHhcccCCccceEEEEeCCeeEEEecCCcccchhcchhhHhcCCCcEEEEEeecc
Confidence 999999998642 34668899999999999999998842 2689999999
Q ss_pred eeCCC--CCCCCeec--CCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 53 IVDPT--SGDQPLYN--EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 53 ~~~~~--~~~QP~~~--~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
+.|.. .+.||+.. ..++++++|||+|+|+.+||++|. |+.|++.||+|||++|
T Consensus 87 T~G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVI~~L 145 (484)
T PRK07272 87 TAGSASIENIQPFLFHFHDMQFGLAHNGNLTNAVSLRKELEKQGAIFHSSSDTEILMHL 145 (484)
T ss_pred ccCCCCcCCCCCEEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence 99964 58999975 467899999999999999999997 8999999999999874
>PRK07349 amidophosphoribosyltransferase; Provisional
Back Show alignment and domain information
Probab=99.96 E-value=2.3e-29 Score=184.19 Aligned_cols=102 Identities=25% Similarity=0.367 Sum_probs=87.5
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeC---------------------------CceEeeeeeee
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHG---------------------------DCYLAHQRLAI 53 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~---------------------------~~~l~~~rl~~ 53 (105)
||||+|+++.+.. ....+..++.+|+|||||++|+++.+ ++++||+||+|
T Consensus 33 mCGI~Gi~~~~~~---~~~~~~~gL~~LqHRGqdsaGIa~~~~~~~~~~K~~Glv~~vf~~~~l~~l~G~i~IGHvRysT 109 (500)
T PRK07349 33 ACGVFGVYAPGEE---VAKLTYFGLYALQHRGQESAGIATFEGDKVHLHKDMGLVSQVFDEDILEELPGDLAVGHTRYST 109 (500)
T ss_pred CCeEEEEECCCcC---HHHHHHHHHHHhcccCcCcceEEEEeCCEEEEEecCcchhhhcchhhhhcCCCCEEEEEeeccc
Confidence 9999999985422 34667789999999999999998733 25899999999
Q ss_pred eCCC--CCCCCeec--CCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 54 VDPT--SGDQPLYN--EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 54 ~~~~--~~~QP~~~--~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
.|.. .+.||+.. ..++++++|||+|||+.+||++|. |+.|++.||+|||+++
T Consensus 110 ~G~~~~~naQP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~l 167 (500)
T PRK07349 110 TGSSRKANAQPAVLETRLGPLALAHNGNLVNTVELREELLARGCELTTTTDSEMIAFA 167 (500)
T ss_pred CCCCCccCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHH
Confidence 9975 57999975 347899999999999999999997 8999999999999874
>PRK06388 amidophosphoribosyltransferase; Provisional
Back Show alignment and domain information
Probab=99.96 E-value=2.7e-29 Score=183.09 Aligned_cols=101 Identities=29% Similarity=0.422 Sum_probs=87.6
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeC--------------------------CceEeeeeeeee
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHG--------------------------DCYLAHQRLAIV 54 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~--------------------------~~~l~~~rl~~~ 54 (105)
||||+|+++..+ ....+..++.+|+|||||++|+++.+ ++++||+||+|.
T Consensus 19 mCGI~G~~~~~~----~~~~~~~gL~~LqhRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~~~~~~l~G~~gIGH~RyaT~ 94 (474)
T PRK06388 19 DCAVVGFKGGIN----AYSPIITALRTLQHRGQESAGMAVFDGRKIHLKKGMGLVTDVFNPATDPIKGIVGVGHTRYSTA 94 (474)
T ss_pred CCeEEEEECCcc----hHHHHHHHHHHhhCcCcCcceEEEEcCCEEEEEecCcchHHHhhhhhhcCCCcEEEeeeeeeec
Confidence 999999998643 34678899999999999999999843 258999999999
Q ss_pred CCC--CCCCCeec--CCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 55 DPT--SGDQPLYN--EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 55 ~~~--~~~QP~~~--~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
|.. .+.||+.. ..+.++++|||+|||+.+||++|. |+.|++.||+||++++
T Consensus 95 G~~~~~naqP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVi~~l 151 (474)
T PRK06388 95 GSKGVENAGPFVINSSLGYIGISHNGEIVNADELREEMKKEGYIFQSDSDTEVMLAE 151 (474)
T ss_pred CCCCccCCCCeEeecCCCCEEEEECceECCHHHHHHHHHHCCCcccCCCHHHHHHHH
Confidence 964 67899963 457899999999999999999997 8999999999999874
>PRK08341 amidophosphoribosyltransferase; Provisional
Back Show alignment and domain information
Probab=99.96 E-value=2.9e-29 Score=181.74 Aligned_cols=99 Identities=25% Similarity=0.392 Sum_probs=86.8
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeC--------------------------CceEeeeeeeee
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHG--------------------------DCYLAHQRLAIV 54 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~--------------------------~~~l~~~rl~~~ 54 (105)
||||+|+++. + ....+..++.+|+|||||++|+++.+ ++++||+||+|.
T Consensus 4 ~CGI~G~~~~-~----~~~~l~~gL~~LqhRG~dsaGIa~~~~~~~~~K~~Glv~~vf~~~~~~~l~g~~~IGH~R~sT~ 78 (442)
T PRK08341 4 KCGIFAAYSE-N----APKKAYYALIALQHRGQEGAGISVWRHRIRTVKGHGLVSEVFKGGSLSRLKSNLAIGHVRYSTS 78 (442)
T ss_pred ccEEEEEECC-C----cHHHHHHHHHHhhccCcccceEEEECCcEEEEecCCchhhhhcccccccCCCCEEEEEeecccc
Confidence 8999999983 2 23678899999999999999997733 468999999999
Q ss_pred CCCCCCCCeec--CCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhcc
Q 037758 55 DPTSGDQPLYN--EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAH 104 (105)
Q Consensus 55 ~~~~~~QP~~~--~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~ 104 (105)
|...+.||+.. ..+.++++|||+|||+.+||++|. |+.|+|.||+|||++
T Consensus 79 G~~~~~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~F~s~sDtEVI~~ 132 (442)
T PRK08341 79 GSLSEVQPLEVECCGYKIAIAHNGTLTNFLPLRRKYESRGVKFRSSVDTELIGI 132 (442)
T ss_pred CCCcCcCCEEeecCCCCEEEEEEEEEECHHHHHHHHHHcCCccCCCCHHHHHHH
Confidence 98788999965 357899999999999999999997 899999999999976
>PRK07631 amidophosphoribosyltransferase; Provisional
Back Show alignment and domain information
Probab=99.96 E-value=4.5e-29 Score=181.87 Aligned_cols=101 Identities=30% Similarity=0.477 Sum_probs=87.0
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeC---------------------------CceEeeeeeee
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHG---------------------------DCYLAHQRLAI 53 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~---------------------------~~~l~~~rl~~ 53 (105)
||||+|+++..+ ....+..++.+|+|||||++|+++.+ ++++||+||+|
T Consensus 11 mCGI~Gi~~~~~----~~~~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~l~~l~G~~gIGH~RysT 86 (475)
T PRK07631 11 ECGVFGIWGHEE----AAQITYYGLHSLQHRGQEGAGIVVTDGGKLSAHKGLGLVTEVFQNGELDALKGKAAIGHVRYAT 86 (475)
T ss_pred CCcEEEEECCch----hHHHHHHHHHHhcCCCcccCeEEEEcCCEEEEEEcccccchhhchhhhhccCCCEEEEEeeccc
Confidence 999999998542 24667789999999999999998632 35789999999
Q ss_pred eCCC--CCCCCee--cCCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 54 VDPT--SGDQPLY--NEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 54 ~~~~--~~~QP~~--~~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
.|.. .+.||+. +..++++++|||+|||+.+||++|. |+.|++.||+||+++|
T Consensus 87 ~G~~~~~n~QP~~~~~~~g~ialvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEVi~~L 144 (475)
T PRK07631 87 AGGGGYENVQPLLFRSQTGSLALAHNGNLVNATQLKLQLENQGSIFQTTSDTEVLAHL 144 (475)
T ss_pred cCCCCcCCcCCeEeEcCCCCEEEEEEEEEECHHHHHHHHHhCCCcCCCCCHHHHHHHH
Confidence 9975 5789995 4567899999999999999999997 8999999999999874
>PRK09123 amidophosphoribosyltransferase; Provisional
Back Show alignment and domain information
Probab=99.96 E-value=7.3e-29 Score=181.15 Aligned_cols=101 Identities=30% Similarity=0.457 Sum_probs=87.3
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeC----------------------------CceEeeeeee
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHG----------------------------DCYLAHQRLA 52 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~----------------------------~~~l~~~rl~ 52 (105)
||||+|+++..+ ....+..++.+|+|||||++|+++.+ ++++||+||+
T Consensus 21 mCGI~Gi~~~~~----~~~~~~~gL~~LqHRG~dsaGia~~~~~~~~~~k~~Glv~~vf~~~~~l~~l~G~~~IGH~R~s 96 (479)
T PRK09123 21 ECGVFGILGHPD----AAALTALGLHALQHRGQEAAGIVSFDGERFHSERRMGLVGDHFTDADVIARLPGNRAIGHVRYS 96 (479)
T ss_pred cCeEEEEEcCcc----hHHHHHHHHHHhcCcCccCCEEEEEECCEEEEEecCcchhhhhhhhhhhhccCCCEEEEEEecc
Confidence 999999998642 33567889999999999999998733 2478999999
Q ss_pred eeCCC--CCCCCeec--CCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 53 IVDPT--SGDQPLYN--EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 53 ~~~~~--~~~QP~~~--~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
+.|.. .+.|||.. ..++++++|||+|+|+.+||++|. |+.|++.||+|||++|
T Consensus 97 T~G~~~~~n~QP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDSEvi~~L 155 (479)
T PRK09123 97 TTGETILRNVQPLFAELEFGGLAIAHNGNLTNALTLRRELIRRGAIFQSTSDTEVILHL 155 (479)
T ss_pred cCCCCCcCCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhCCCcCCCCCHHHHHHHH
Confidence 99964 68899976 357899999999999999999997 8999999999999874
>PRK06781 amidophosphoribosyltransferase; Provisional
Back Show alignment and domain information
Probab=99.95 E-value=2.2e-28 Score=178.31 Aligned_cols=101 Identities=30% Similarity=0.497 Sum_probs=86.6
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeC---------------------------CceEeeeeeee
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHG---------------------------DCYLAHQRLAI 53 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~---------------------------~~~l~~~rl~~ 53 (105)
||||+|+++..+ ....+..++.+|+|||||++|+++.+ ++++||+|++|
T Consensus 11 mCGI~Gi~~~~~----~~~~~~~gL~~LqhRG~dsaGia~~d~~~~~~~k~~GlV~~vf~~~~l~~l~g~~~IGHvRyaT 86 (471)
T PRK06781 11 ECGVFGIWGHEN----AAQVSYYGLHSLQHRGQEGAGIVVNNGEKIVGHKGLGLISEVFSRGELEGLNGKSAIGHVRYAT 86 (471)
T ss_pred cCeEEEEEcCcc----HHHHHHHHHHHhhCcCcCcceEEEEeCCEEEEEecCcchhhhcchhhHhcCCCCEEEEEeEccc
Confidence 999999998643 23567789999999999999998632 24789999999
Q ss_pred eCCC--CCCCCeec--CCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 54 VDPT--SGDQPLYN--EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 54 ~~~~--~~~QP~~~--~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
.|.. .+.||+.. ..++++++|||+|+|+.+||++|. |+.|++.||+|||+++
T Consensus 87 ~G~~~~~naqP~~~~~~~g~~alvhNG~I~N~~eLr~~L~~~G~~f~s~sDtEvI~~L 144 (471)
T PRK06781 87 AGGSEVANVQPLLFRFSDHSMALAHNGNLINAKMLRRELEAEGSIFQTSSDTEVLLHL 144 (471)
T ss_pred CCCCCcCCCCCeEEecCCCCEEEEEEEEEcCHHHHHHHHHhCCCcCCCCCHHHHHHHH
Confidence 9975 67899953 457899999999999999999997 8999999999999874
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Back Show alignment and domain information
Probab=99.95 E-value=2.4e-28 Score=182.87 Aligned_cols=101 Identities=34% Similarity=0.496 Sum_probs=88.4
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEe---------------------------CCceEeeeeeee
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYH---------------------------GDCYLAHQRLAI 53 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~---------------------------~~~~l~~~rl~~ 53 (105)
||||+|+++..+ ....+..|+.+|+|||||++|++.. +++++||+||++
T Consensus 1 MCGI~g~~~~~~----~~~~~~~~l~~l~hRG~d~~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~g~~~igH~R~at 76 (604)
T PRK00331 1 MCGIVGYVGQRN----AAEILLEGLKRLEYRGYDSAGIAVLDDGGLEVRKAVGKVANLEAKLEEEPLPGTTGIGHTRWAT 76 (604)
T ss_pred CcEEEEEEcCcc----HHHHHHHHHHHHhccCcCcceEEEEeCCEEEEEECCcCHHHHHhhhccccCCCcEEEEEEecCC
Confidence 999999997532 2367889999999999999999872 346899999999
Q ss_pred eCCC--CCCCCeecCCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 54 VDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 54 ~~~~--~~~QP~~~~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
.|.. .+.||+.+..++++++|||+|||+.+||++|. |+.|.+.||+||++++
T Consensus 77 ~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~l~~~g~~~~~~sDsEvi~~l 132 (604)
T PRK00331 77 HGKPTERNAHPHTDCSGRIAVVHNGIIENYAELKEELLAKGHVFKSETDTEVIAHL 132 (604)
T ss_pred CCCCccccCCccccCCCCEEEEEeEEEcCHHHHHHHHHhCCCcccCCCHHHHHHHH
Confidence 9964 58899987678899999999999999999997 8999999999999864
>PRK09246 amidophosphoribosyltransferase; Provisional
Back Show alignment and domain information
Probab=99.95 E-value=3.1e-28 Score=178.90 Aligned_cols=101 Identities=30% Similarity=0.521 Sum_probs=86.2
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEe---------------------------CCceEeeeeeee
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYH---------------------------GDCYLAHQRLAI 53 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~---------------------------~~~~l~~~rl~~ 53 (105)
||||+|+++..+ ....+..|+.+|+|||||++|+++. +++++||+||+|
T Consensus 1 MCGI~Gi~~~~~----~~~~~~~~L~aLqHRGqdsaGi~~~~~~~~~~~k~~Glv~~vf~~~~l~~l~g~~~IGHvRysT 76 (501)
T PRK09246 1 MCGIVGIVGHSP----VNQSIYDALTVLQHRGQDAAGIVTIDGNRFRLRKANGLVRDVFRTRHMRRLQGNMGIGHVRYPT 76 (501)
T ss_pred CceEEEEEcCcC----HHHHHHHHHHHHhccCcceeEEEEEeCCEEEEEccCCccccccCcchHhhCCCCEEEEEEcCCc
Confidence 999999998632 2356788999999999999999983 357899999999
Q ss_pred eCCC--CCCCCee-cCCCcEEEEEceeEcChHHHHHHhc---CCCcccCChhhhhccC
Q 037758 54 VDPT--SGDQPLY-NEDKTVVVTVNGEIYNHKQLREQLK---NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 54 ~~~~--~~~QP~~-~~~~~~~l~~nGeI~N~~~L~~~l~---g~~~~~~sD~evil~~ 105 (105)
.|.. .+.|||. ....+++|+|||+|+|+.+||++|. ++.|++.||+|||+++
T Consensus 77 ~G~~~~~n~QP~~~~~~~g~alahNG~I~N~~eLr~~L~~~~~~~f~s~sDsEvi~~l 134 (501)
T PRK09246 77 AGSSSSAEAQPFYVNSPYGITLAHNGNLTNAEELRKELFEKDRRHINTTSDSEVLLNV 134 (501)
T ss_pred CCCCCcccCCCEEEeCCCCEEEEEeEEEcCHHHHHHHHHhcCCCeeecCCHHHHHHHH
Confidence 9974 6899997 3445699999999999999999997 4689999999999864
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type
Back Show alignment and domain information
Probab=99.95 E-value=1e-27 Score=160.48 Aligned_cols=103 Identities=45% Similarity=0.753 Sum_probs=91.4
Q ss_pred eEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeCCceEeeeeeeeeCCCCCCCCeecCCCcEEEEEceeEcCh
Q 037758 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHGDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNGEIYNH 81 (105)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~~~~l~~~rl~~~~~~~~~QP~~~~~~~~~l~~nGeI~N~ 81 (105)
|||+|+++.+... ...+.+..|+.+|+|||||+.+++..++++++|+|+++.+...+.||+...+++++++|||+|||+
T Consensus 1 cGI~g~~~~~~~~-~~~~~~~~~~~~l~hRGpd~~~~~~~~~~~lgh~rl~~~~~~~~~qP~~~~~~~~~~~~nG~i~N~ 79 (220)
T cd00712 1 CGIAGIIGLDGAS-VDRATLERMLDALAHRGPDGSGIWIDEGVALGHRRLSIIDLSGGAQPMVSEDGRLVLVFNGEIYNY 79 (220)
T ss_pred CeEEEEEeCCCCc-chHHHHHHHHHHHhccCCCCCCEEEECCEEEEEEeeeecCcccCCCCeEeCCCCEEEEEEEEEeCH
Confidence 9999999754321 235778999999999999999999999999999999999977789999887788999999999999
Q ss_pred HHHHHHhc--CCCcccCChhhhhccC
Q 037758 82 KQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 82 ~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
.+|+++|. ++.+++.||+|+++++
T Consensus 80 ~~L~~~l~~~~~~~~~~sD~e~l~~~ 105 (220)
T cd00712 80 RELRAELEALGHRFRTHSDTEVILHL 105 (220)
T ss_pred HHHHHHHHhcCCcCCCCChHHHHHHH
Confidence 99999997 7889999999999853
Asparagine synthetase B catalyses the ATP-dependent conversion of aspartate to asparagine. This enzyme is a homodimer, with each monomer composed of a glutaminase domain and a synthetase domain. The N-terminal glutaminase domain hydrolyzes glutamine to glutamic acid and ammonia.
>cd03766 Gn_AT_II_novel Gn_AT_II_novel
Back Show alignment and domain information
Probab=99.95 E-value=2.2e-28 Score=159.63 Aligned_cols=97 Identities=29% Similarity=0.403 Sum_probs=81.5
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeC----CceEeeeeeeeeCCCCCCCCeecCCCcEEEEEce
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHG----DCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNG 76 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~----~~~l~~~rl~~~~~~~~~QP~~~~~~~~~l~~nG 76 (105)
||||+|+++...........+.+|+.+|+|||||+.+++..+ ++.++|+||++++...+.||+...+++++++|||
T Consensus 1 MCGI~~~~~~~~~~~~~~~~~~~m~~~l~hRGPD~~~~~~~~~~~~~~~l~~~rL~i~~~~~~~QP~~~~~~~~~lv~NG 80 (181)
T cd03766 1 MCGILCSVSPSGPHINSSLLSEELLPNLRNRGPDYLSTRQLSVTNWTLLFTSSVLSLRGDHVTRQPLVDQSTGNVLQWNG 80 (181)
T ss_pred CCcEEEEEeCCCCcccchhhHHHHHHHHHhcCCCccCCEEeeccccEEEEEeeEEEecCCCCCCCCCEeCCCCEEEEECC
Confidence 999999997543211123568899999999999999999873 4789999999999877899998877789999999
Q ss_pred eEcChHHHHHHhcCCCcccCChhhhhccC
Q 037758 77 EIYNHKQLREQLKNHQFRTGSDCEVIAHL 105 (105)
Q Consensus 77 eI~N~~~L~~~l~g~~~~~~sD~evil~~ 105 (105)
||||+.+|++ +.||+|+|+++
T Consensus 81 eIyN~~~l~~--------s~sDtEvi~~l 101 (181)
T cd03766 81 ELYNIDGVED--------EENDTEVIFEL 101 (181)
T ss_pred EEECcccccC--------CCCHHHHHHHH
Confidence 9999999864 78999999864
This asparagine synthase-related domain is present in eukaryotes but its function has not yet been determined. The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthet
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Back Show alignment and domain information
Probab=99.95 E-value=3.1e-28 Score=183.33 Aligned_cols=101 Identities=31% Similarity=0.440 Sum_probs=87.9
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeC----------------------------------CceE
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHG----------------------------------DCYL 46 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~----------------------------------~~~l 46 (105)
||||+|+++..+ ....+..++.+|+|||||++|+++.+ ++++
T Consensus 24 MCGI~G~~~~~~----~~~~~~~~l~~L~hRG~ds~Gia~~~~~~~~~~~k~~g~g~v~~~~~~~~~~~~~~~~~~~~~i 99 (640)
T PTZ00295 24 CCGIVGYLGNED----ASKILLEGIEILQNRGYDSCGISTISSGGELKTTKYASDGTTSDSIEILKEKLLDSHKNSTIGI 99 (640)
T ss_pred CCeEEEEEcCcc----hHHHHHHHHHHHHhcCCCeeEEEEEeCCCcEEEEEeCCCCchHHHHHHHHHHhhcCCCCCcEEE
Confidence 999999998542 34678899999999999999999832 1378
Q ss_pred eeeeeeeeCCC--CCCCCeecCCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 47 AHQRLAIVDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 47 ~~~rl~~~~~~--~~~QP~~~~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
||+||++.|.. .+.||+....++++++|||+|||+.+||++|. |+.|+++||+|||+++
T Consensus 100 gH~R~at~g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~f~s~tDsEvi~~l 162 (640)
T PTZ00295 100 AHTRWATHGGKTDENAHPHCDYKKRIALVHNGTIENYVELKSELIAKGIKFRSETDSEVIANL 162 (640)
T ss_pred EEeccccCCCCCcCCCCCCCCCCCCEEEEEEEEEcCHHHHHHHHHHCCCcccCCChHHHHHHH
Confidence 99999999964 68899987668899999999999999999997 8999999999999874
>PLN02440 amidophosphoribosyltransferase
Back Show alignment and domain information
Probab=99.95 E-value=4.9e-28 Score=177.02 Aligned_cols=101 Identities=30% Similarity=0.473 Sum_probs=86.9
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEe---------------------------CCceEeeeeeee
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYH---------------------------GDCYLAHQRLAI 53 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~---------------------------~~~~l~~~rl~~ 53 (105)
||||+|+++..+ ....+..|+.+|+|||||++|+++. +++++||+|+++
T Consensus 1 MCGI~Gi~~~~~----~~~~~~~~L~~LqHRGqds~Gi~~~d~~~~~~~k~~Glv~~vf~~~~l~~l~g~~~IGHvRysT 76 (479)
T PLN02440 1 ECGVVGIFGDPE----ASRLCYLGLHALQHRGQEGAGIVTVDGNRLQSITGNGLVSDVFDESKLDQLPGDIAIGHVRYST 76 (479)
T ss_pred CceEEEEECCcc----HHHHHHHHHHHHHhhCcccceEEEEcCCEEEEEecCCchhhhcchhhhhccCCcEEEEEEeccc
Confidence 999999997532 2367889999999999999999872 236799999999
Q ss_pred eCCC--CCCCCeec--CCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 54 VDPT--SGDQPLYN--EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 54 ~~~~--~~~QP~~~--~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
.+.. .+.|||.. ..++++++|||+|+|+.+|+++|. |+.|++.||+|+|+++
T Consensus 77 ~G~~~~~n~QPf~~~~~~g~~~lahNG~I~N~~eLr~~L~~~g~~f~s~sDsEvi~~l 134 (479)
T PLN02440 77 AGASSLKNVQPFVANYRFGSIGVAHNGNLVNYEELRAKLEENGSIFNTSSDTEVLLHL 134 (479)
T ss_pred cCCCCccCCCCceeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcCCCCCHHHHHHHH
Confidence 9974 68999975 446799999999999999999997 8899999999999864
>PRK05793 amidophosphoribosyltransferase; Provisional
Back Show alignment and domain information
Probab=99.95 E-value=9.5e-28 Score=175.17 Aligned_cols=103 Identities=27% Similarity=0.431 Sum_probs=87.3
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeC---------------------------CceEeeeeeee
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHG---------------------------DCYLAHQRLAI 53 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~---------------------------~~~l~~~rl~~ 53 (105)
||||+|+++.++ .+ ....+..++.+|+|||||++|++..+ ++++||+|+++
T Consensus 14 mCGI~Gi~~~~~-~~-~~~~~~~gL~~LqhRG~dsaGIa~~~~~~~~~~k~~G~v~~~f~~~~l~~l~g~~~iGHvR~sT 91 (469)
T PRK05793 14 ECGVFGVFSKNN-ID-VASLTYYGLYALQHRGQESAGIAVSDGEKIKVHKGMGLVSEVFSKEKLKGLKGNSAIGHVRYST 91 (469)
T ss_pred CCeEEEEEcCCC-cc-HHHHHHHHHHHHhhhCCCcceEEEEeCCEEEEEecccccccccchhhHhccCCcEEEEEeeccc
Confidence 999999998642 11 34567789999999999999998643 25789999999
Q ss_pred eCCC--CCCCCeec--CCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 54 VDPT--SGDQPLYN--EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 54 ~~~~--~~~QP~~~--~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
.|.. .+.||+.. ..++++++|||+|+|+.+||++|. |+.|++.||+|+|+++
T Consensus 92 ~G~~~~~n~qPf~~~~~~g~~alvhNG~I~N~~eLr~~L~~~g~~f~s~sDSEvi~~l 149 (469)
T PRK05793 92 TGASDLDNAQPLVANYKLGSIAIAHNGNLVNADVIRELLEDGGRIFQTSIDSEVILNL 149 (469)
T ss_pred CCCCCCCCCCCeEeecCCCCEEEEEEEEEeCHHHHHHHHHhcCCcccCCCHHHHHHHH
Confidence 9975 57899976 357899999999999999999997 8899999999999874
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing)
Back Show alignment and domain information
Probab=99.95 E-value=1.3e-27 Score=174.55 Aligned_cols=102 Identities=47% Similarity=0.763 Sum_probs=90.1
Q ss_pred EEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCce-EeCCceEeeeeeeeeCCCCCCCCeecCCCcEEEEEceeEcChH
Q 037758 4 ILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLH-YHGDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNGEIYNHK 82 (105)
Q Consensus 4 I~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~-~~~~~~l~~~rl~~~~~~~~~QP~~~~~~~~~l~~nGeI~N~~ 82 (105)
|+|+|+.++........+.+|+.+|+|||||+.|+| ..++++|||+||++.+...+.||+.+.+++++++|||||||+.
T Consensus 1 i~g~~~~~~~~~~~~~~~~~m~~~l~hRGPD~~g~~~~~~~~~lgh~rl~i~d~~~~~qP~~~~~~~~~lv~nGeiyN~~ 80 (467)
T TIGR01536 1 IAGFFDLDDKAVEEDEAILRMSDTIAHRGPDASGIEYKDGNAILGHRRLAIIDLSGGAQPMSNEGKTYVIVFNGEIYNHE 80 (467)
T ss_pred CEEEEecCCcchhhHHHHHHHHHHhhCcCCCcCCcEEccCCEEEEEEEeEEeCCCCCCCeeECCCCCEEEEEeeEEcCHH
Confidence 678887665432234578999999999999999999 8899999999999999877799999888899999999999999
Q ss_pred HHHHHhc--CCCcccCChhhhhccC
Q 037758 83 QLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 83 ~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
+|+++|. |+.|++.||+|+++++
T Consensus 81 eL~~~l~~~g~~~~~~~D~e~il~~ 105 (467)
T TIGR01536 81 ELREELEAKGYTFQTDSDTEVILHL 105 (467)
T ss_pred HHHHHHHhcCCccCCCCHHHHHHHH
Confidence 9999997 8999999999999863
This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
>PRK07847 amidophosphoribosyltransferase; Provisional
Back Show alignment and domain information
Probab=99.95 E-value=1e-27 Score=175.88 Aligned_cols=102 Identities=19% Similarity=0.330 Sum_probs=86.1
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeCC---------------------------ceEeeeeeee
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHGD---------------------------CYLAHQRLAI 53 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~~---------------------------~~l~~~rl~~ 53 (105)
||||+|+++..+. ....+..++.+|+|||||++|+++.++ +++||+||++
T Consensus 23 mCGI~Gi~~~~~~---~~~~~~~gL~~LqHRGqdsaGIa~~d~~~i~~~K~~Glv~~vf~d~~l~~l~G~i~IGHvR~sT 99 (510)
T PRK07847 23 ECGVFGVWAPGEE---VAKLTYYGLYALQHRGQEAAGIAVSDGSQILVFKDLGLVSQVFDEQTLASLQGHVAIGHCRYST 99 (510)
T ss_pred cCeEEEEECCCcC---HHHHHHHHHHHHhhhCcCcccEEEEeCCEEEEEecCccHHHhhchhhhhhcCCcEEEEeccCCc
Confidence 9999999986422 346677899999999999999987432 4799999999
Q ss_pred eCCC--CCCCCeecC---CCcEEEEEceeEcChHHHHHHhc--CC-----CcccCChhhhhccC
Q 037758 54 VDPT--SGDQPLYNE---DKTVVVTVNGEIYNHKQLREQLK--NH-----QFRTGSDCEVIAHL 105 (105)
Q Consensus 54 ~~~~--~~~QP~~~~---~~~~~l~~nGeI~N~~~L~~~l~--g~-----~~~~~sD~evil~~ 105 (105)
.+.. .+.|||... .++++++|||+|||+.+|+++|. |+ .|++.||+|+|+++
T Consensus 100 ~G~~~~~naQP~~~~~~~~g~ialvHNG~I~N~~eLr~~L~~~G~~~~~~~f~s~sDSEVI~~L 163 (510)
T PRK07847 100 TGASTWENAQPTFRATAAGGGVALGHNGNLVNTAELAARARDRGLIRGRDPAGATTDTDLVTAL 163 (510)
T ss_pred CCCCcccCCCCcCcccCCCCCEEEEEEEEEeCHHHHHHHHHhcCCccccCCCCCCCHHHHHHHH
Confidence 9975 578999752 57899999999999999999997 65 48999999999874
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Back Show alignment and domain information
Probab=99.95 E-value=1.2e-27 Score=180.57 Aligned_cols=105 Identities=26% Similarity=0.345 Sum_probs=88.7
Q ss_pred CeEEEEEEcCCC--CchhHHHHHHHHHhhccccCCCCCCceEe-----------------C-------------------
Q 037758 1 MCGILAVFGCID--NSQAKRSRIIELSRRLRHRGPDWSGLHYH-----------------G------------------- 42 (105)
Q Consensus 1 McGI~g~~~~~~--~~~~~~~~~~~ml~~l~~RG~d~~g~~~~-----------------~------------------- 42 (105)
||||+|+++... ........+...|.+|+|||+|++|++.. +
T Consensus 1 mCGI~g~~~~~~~~~~~~~~~~~~~gL~~Le~RG~dsaGia~~~~~~~~~~~~~~~~~~~~~~~~~k~~G~v~~l~~~~~ 80 (670)
T PTZ00394 1 MCGIFGYANHNVPRTVEQILNVLLDGIQKVEYRGYDSAGLAIDANIGSEKEDGTAASAPTPRPCVVRSVGNISQLREKVF 80 (670)
T ss_pred CceEEEEECCCCccccccHHHHHHHHHHHHhccCcccceEEEecCcccccccccccccCCCcEEEEECCccHHHHHHHHh
Confidence 999999998640 00024467889999999999999999886 1
Q ss_pred -----------------CceEeeeeeeeeCCC--CCCCCeecCCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhh
Q 037758 43 -----------------DCYLAHQRLAIVDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEV 101 (105)
Q Consensus 43 -----------------~~~l~~~rl~~~~~~--~~~QP~~~~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~ev 101 (105)
++++||+||++.|.. .+.||+.+.+++++++|||+|||+.+||++|. |+.|+|+||+||
T Consensus 81 ~~~~~~~~~~~~~~~~g~~~igH~R~at~g~~~~~n~qP~~~~~~~i~vvhNG~I~N~~eLr~~L~~~g~~f~s~tDtEv 160 (670)
T PTZ00394 81 SEAVAATLPPMDATTSHHVGIAHTRWATHGGVCERNCHPQQSNNGEFTIVHNGIVTNYMTLKELLKEEGYHFSSDTDTEV 160 (670)
T ss_pred cchhhhhccccccCCCCCEEEEEeeceecCCCCcCCCCCcCCCCCCEEEEECeeEecHHHHHHHHHHcCCEecCCChHHH
Confidence 136899999999974 67899988778899999999999999999997 899999999999
Q ss_pred hccC
Q 037758 102 IAHL 105 (105)
Q Consensus 102 il~~ 105 (105)
|+||
T Consensus 161 i~~l 164 (670)
T PTZ00394 161 ISVL 164 (670)
T ss_pred HHHH
Confidence 9864
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type
Back Show alignment and domain information
Probab=99.95 E-value=1.8e-27 Score=162.05 Aligned_cols=101 Identities=31% Similarity=0.473 Sum_probs=85.6
Q ss_pred eEEEEEEcCCCCchhHHHHHHHHHhhccccCC-CCCCceEeC------------------------------------Cc
Q 037758 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGP-DWSGLHYHG------------------------------------DC 44 (105)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~-d~~g~~~~~------------------------------------~~ 44 (105)
|||+|+++..... .....+..|+.+|+|||| |++|++..+ .+
T Consensus 1 CGI~G~~~~~~~~-~~~~~~~~~l~~lqhRG~~dsaGia~~~~~~~~~~s~~~~~~~~K~~G~~~~v~~~~~~~~~~~~~ 79 (249)
T cd01907 1 CGIFGIMSKDGEP-FVGALLVEMLDAMQERGPGDGAGFALYGDPDAFVYSSGKDMEVFKGVGYPEDIARRYDLEEYKGYH 79 (249)
T ss_pred CcEEEEEecCCcc-ccHHHHHHHHHHHHhcCCCCCceEEEEcCCCeEEEecCCCeEEEeeccCHHHHHhhcCchheEEEE
Confidence 9999999863211 134678899999999999 999999852 36
Q ss_pred eEeeeeeeeeCCC--CCCCCeecCCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 45 YLAHQRLAIVDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 45 ~l~~~rl~~~~~~--~~~QP~~~~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
++||+|++|.+.. .+.|||.. ++++++|||+|||+.+||++|. |+.|.+.||+|+++++
T Consensus 80 ~igH~R~aT~g~~~~~n~qP~~~--~~~~lvhNG~I~N~~~lr~~L~~~g~~~~~~sDsEvi~~l 142 (249)
T cd01907 80 WIAHTRQPTNSAVWWYGAHPFSI--GDIAVVHNGEISNYGSNREYLERFGYKFETETDTEVIAYY 142 (249)
T ss_pred EEEEEeccCCCCCCccCCCCeec--CCEEEEeCCeecCHHHHHHHHHhcCCCCCCCCHHHHHHHH
Confidence 7899999999864 58899976 4899999999999999999997 8899999999999763
GlxB is a glutamine amidotransferase-like protein of unknown function found in bacteria and archaea. GlxB has a structural fold similar to that of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The GlxB fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase
Back Show alignment and domain information
Probab=99.94 E-value=2.9e-27 Score=178.89 Aligned_cols=105 Identities=30% Similarity=0.423 Sum_probs=87.9
Q ss_pred CeEEEEEEcCCC--CchhHHHHHHHHHhhccccCCCCCCceEeC------------------------------------
Q 037758 1 MCGILAVFGCID--NSQAKRSRIIELSRRLRHRGPDWSGLHYHG------------------------------------ 42 (105)
Q Consensus 1 McGI~g~~~~~~--~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~------------------------------------ 42 (105)
||||+|+++... ........+...|.+|+|||+|++|+++.+
T Consensus 1 mCGI~g~~~~~~~~~~~~~~~~l~~gL~~Lq~RG~dsaGia~~~~~~~~~~~~~~~k~~G~~~~l~~~~~~~~~~~~l~~ 80 (680)
T PLN02981 1 MCGIFAYLNYNVPRERRFILEVLFNGLRRLEYRGYDSAGIAIDNDPSLESSSPLVFREEGKIESLVRSVYEEVAETDLNL 80 (680)
T ss_pred CceEEEEEccCCccccccHHHHHHHHHHHHhcCCcccceEEEEcCCcccccceEEEEcCCCHHHHHHHHhhhcccccccc
Confidence 999999998531 011245778899999999999999999832
Q ss_pred ------CceEeeeeeeeeCCC--CCCCCeecC-CCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 43 ------DCYLAHQRLAIVDPT--SGDQPLYNE-DKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 43 ------~~~l~~~rl~~~~~~--~~~QP~~~~-~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
++++||+||++.|.. .+.||+... .+.++++|||+|||+.+||++|. |+.|+++||+|||+|+
T Consensus 81 ~~~~~g~~~IGH~R~at~g~~~~~n~qP~~~~~~~~ialvhNG~I~N~~eLr~~L~~~G~~f~s~tDtEvi~~l 154 (680)
T PLN02981 81 DLVFENHAGIAHTRWATHGPPAPRNSHPQSSGPGNEFLVVHNGIITNYEVLKETLLRHGFTFESDTDTEVIPKL 154 (680)
T ss_pred ccCCCCcEEEEEcccccCCCCCcCCCCCcccCCCCcEEEEECceEecHHHHHHHHHhCCCeeccCCHHHHHHHH
Confidence 257899999999974 578999763 36799999999999999999997 8999999999999874
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing)
Back Show alignment and domain information
Probab=99.94 E-value=3.1e-27 Score=177.03 Aligned_cols=100 Identities=36% Similarity=0.522 Sum_probs=87.3
Q ss_pred eEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEe---------------------------CCceEeeeeeeee
Q 037758 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYH---------------------------GDCYLAHQRLAIV 54 (105)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~---------------------------~~~~l~~~rl~~~ 54 (105)
|||+|+++... ....+..|+.+|+|||||++|++.. +++++||+||++.
T Consensus 1 CGI~g~~~~~~----~~~~~~~~l~~l~hRG~ds~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~igH~R~at~ 76 (607)
T TIGR01135 1 CGIVGYIGQRD----AVPILLEGLKRLEYRGYDSAGIAVVDEGKLFVRKAVGKVQELANKLGEKPLPGGVGIGHTRWATH 76 (607)
T ss_pred CeEEEEECCcc----HHHHHHHHHHHHhccCcccceEEEEeCCEEEEEECCcCHHHHHhhhhcccCCccEEEEEeeccCC
Confidence 99999998432 2367889999999999999999983 3458999999999
Q ss_pred CCC--CCCCCeecCCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 55 DPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 55 ~~~--~~~QP~~~~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
|.. .+.|||....++++++|||+|||+.+||++|. |+.|++.||+|||+++
T Consensus 77 g~~~~~n~qP~~~~~~~~~~vhNG~I~N~~~Lr~~L~~~g~~~~~~tDsEvi~~l 131 (607)
T TIGR01135 77 GKPTEENAHPHTDEGGRIAVVHNGIIENYAELREELEARGHVFVSDTDTEVIAHL 131 (607)
T ss_pred CCCCccCCCCcCcCCCCEEEEEecccCCHHHHHHHHHhCCCccccCCHHHHHHHH
Confidence 964 58899987777899999999999999999997 8999999999999864
The member from Methanococcus jannaschii contains an intein.
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Back Show alignment and domain information
Probab=99.94 E-value=4.3e-27 Score=173.57 Aligned_cols=100 Identities=35% Similarity=0.533 Sum_probs=88.8
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeCC---------------------------ceEeeeeeee
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHGD---------------------------CYLAHQRLAI 53 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~~---------------------------~~l~~~rl~~ 53 (105)
||||+|+++.+.. ....+.+.|++|.|||.|++|+++.++ +++||+||+|
T Consensus 1 MCGIvG~i~~~~~---~~~il~~gL~rLEYRGYDSaGiav~~~~~l~~~k~~Gkv~~l~~~~~~~~~~~~~gIgHTRWAT 77 (597)
T COG0449 1 MCGIVGYIGFLRE---AIDILLEGLKRLEYRGYDSAGIAVVGDGSLNVRKQVGKISNLEELLNKEPLIGGVGIAHTRWAT 77 (597)
T ss_pred CCcEEEEEcCCcc---HHHHHHHHHHHHHccCCCcccEEEEeCCeEEEEEccCCHHHHHhhhcccccCCceeeeeccccC
Confidence 9999999975432 457899999999999999999998742 5699999999
Q ss_pred eCCC--CCCCCeecCCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 54 VDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 54 ~~~~--~~~QP~~~~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
.|.. .+.+|+.+ +++++||||-|-|+.+||++|. |+.|+|+||+|||.||
T Consensus 78 HG~P~~~NAHPh~~--~~~avVHNGIIeN~~eLr~eL~~~G~~F~S~TDTEVi~hL 131 (597)
T COG0449 78 HGGPTRANAHPHSD--GEFAVVHNGIIENFAELKEELEAKGYVFKSDTDTEVIAHL 131 (597)
T ss_pred CCCCCcCCCCCCCC--CCEEEEeCchhhCHHHHHHHHHhcCCEEecCCchHHHHHH
Confidence 9965 68899966 8899999999999999999998 9999999999999885
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Back Show alignment and domain information
Probab=99.93 E-value=3.4e-26 Score=163.55 Aligned_cols=103 Identities=29% Similarity=0.509 Sum_probs=89.3
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeCC----------------------------ceEeeeeee
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHGD----------------------------CYLAHQRLA 52 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~~----------------------------~~l~~~rl~ 52 (105)
||||+|+|+.++. .....++.+|.+|||||+|+.||++.++ .++||+|++
T Consensus 4 ~CGV~Gi~~~~~~--~a~~~~y~gL~aLQHRGQeaAGI~~~dg~~~~~~K~~GLV~dvF~~~~~~~~l~G~~~IGHvRYs 81 (470)
T COG0034 4 MCGVFGIWGHKDN--NAAQLTYYGLYALQHRGQEAAGIAVADGKRFHTHKGMGLVSDVFNERDLLRKLQGNVGIGHVRYS 81 (470)
T ss_pred cceEEEEecCCcc--chHHHHHHHHHHHhhCCcccccEEEEcCceEEEEecCccchhhcCchhhhhhccCcceeeEeeec
Confidence 8999999997642 2457789999999999999999988765 267999999
Q ss_pred eeCCC--CCCCCeec--CCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 53 IVDPT--SGDQPLYN--EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 53 ~~~~~--~~~QP~~~--~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
|.|.. .+.||+.. +.+.++|+|||.|.|..+||++|. |..|+|.||+|+++++
T Consensus 82 TaG~s~~~naQP~~~~~~~g~ialaHNGnl~N~~~Lr~~l~~~g~~f~t~sDsEvll~l 140 (470)
T COG0034 82 TAGSSSIENAQPFYVNSPGGGIALAHNGNLVNAEELRRELEEEGAIFNTTSDSEVLLHL 140 (470)
T ss_pred CCCCcccccccceEEecCCCcEEEEecCcccCHHHHHHHHHhcCceecCCccHHHHHHH
Confidence 99976 57899965 445699999999999999999998 8889999999999874
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type
Back Show alignment and domain information
Probab=99.93 E-value=1.6e-25 Score=152.67 Aligned_cols=100 Identities=30% Similarity=0.495 Sum_probs=85.1
Q ss_pred eEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeCC---------------------------ceEeeeeeeee
Q 037758 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHGD---------------------------CYLAHQRLAIV 54 (105)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~~---------------------------~~l~~~rl~~~ 54 (105)
|||+|+++..+ ....+..|+.+|+|||||++|++..++ ++|+|+|+++.
T Consensus 1 Cgi~g~~~~~~----~~~~~~~~l~~l~~RG~D~~Gi~~~d~~~~~~~k~~g~~~~~~~~~~~~~~~~~~~lgH~R~at~ 76 (252)
T cd00715 1 CGVFGIYGAED----AARLTYLGLYALQHRGQESAGIATSDGKRFHTHKGMGLVSDVFDEEKLRRLPGNIAIGHVRYSTA 76 (252)
T ss_pred CEEEEEECCcc----hHHHHHHHHHHHhccCcceeEEEEEeCCEEEEEecCCcHHHhhcccchhhCCCcEEEEEEEcccC
Confidence 99999998642 236678999999999999999986432 57999999999
Q ss_pred CCC--CCCCCeec--CCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 55 DPT--SGDQPLYN--EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 55 ~~~--~~~QP~~~--~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
+.. .+.|||.. ..++++++|||+|+|+.+|+++|. ++.+++.||+|+++++
T Consensus 77 g~~~~~n~qPf~~~~~~~~~~~~hNG~I~n~~~L~~~l~~~g~~~~~~tDSEvi~~l 133 (252)
T cd00715 77 GSSSLENAQPFVVNSPLGGIALAHNGNLVNAKELREELEEEGRIFQTTSDSEVILHL 133 (252)
T ss_pred CCCCccCCCCcEEecCCCcEEEEEEEEECCHHHHHHHHHHCCCcccCCCHHHHHHHH
Confidence 975 58899975 347899999999999999999996 7888999999999863
This domain is found at the N-terminus of glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase) . The glutaminase domain catalyzes amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. GPATase crystalizes as a homotetramer, but can also exist as a homdimer.
>TIGR01134 purF amidophosphoribosyltransferase
Back Show alignment and domain information
Probab=99.93 E-value=1.5e-25 Score=162.71 Aligned_cols=101 Identities=28% Similarity=0.480 Sum_probs=85.5
Q ss_pred eEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeC---------------------------CceEeeeeeeee
Q 037758 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHG---------------------------DCYLAHQRLAIV 54 (105)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~---------------------------~~~l~~~rl~~~ 54 (105)
|||||+++..+. ....+..|+.+|+|||||++|++..+ ++++||+|+++.
T Consensus 1 CGI~Gi~~~~~~---~~~~~~~~L~~lqhRG~ds~Gia~~d~~~~~~~k~~glv~~v~~~~~l~~l~g~~~IgHvR~aT~ 77 (442)
T TIGR01134 1 CGVVGIYSQEED---AASLTYYGLYALQHRGQEAAGIAVSDGNKIRTHKGNGLVSDVFDERHLERLKGNVGIGHVRYSTA 77 (442)
T ss_pred CEEEEEEcCCcc---HHHHHHHHHHHHHhhCccceEEEEEeCCEEEEEEcCCchhhhcchhhhhcccCcEEEEEEEecCC
Confidence 999999986421 34667789999999999999998632 468999999999
Q ss_pred CCC--CCCCCeec-CCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 55 DPT--SGDQPLYN-EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 55 ~~~--~~~QP~~~-~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
+.. .+.|||.. ..++++++|||+|+|+.+|+++|. |+.|++.||+|+++++
T Consensus 78 G~~~~~n~QPf~~~~~~g~alahNG~I~N~~eLr~~L~~~g~~f~~~sDSEvi~~l 133 (442)
T TIGR01134 78 GSSSLSNAQPFVVNSPGGIALAHNGNLVNAEELREELEEEGRIFNTTSDSEVLLHL 133 (442)
T ss_pred CCCCccCCCCEEEeCCCCEEEEEEEEEcCHHHHHHHHHhcCCcCCCCCHHHHHHHH
Confidence 974 58899974 345599999999999999999997 8889999999999864
Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]
Back Show alignment and domain information
Probab=99.91 E-value=1.4e-24 Score=152.35 Aligned_cols=103 Identities=27% Similarity=0.431 Sum_probs=86.6
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeCC----------------------------ceEeeeeee
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHGD----------------------------CYLAHQRLA 52 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~~----------------------------~~l~~~rl~ 52 (105)
||||+|++..++.. .-..+.....+|||||+|+.||.+.++ .++||.|++
T Consensus 1 eCGv~Gi~~a~~~~--~l~~l~~~~~aLQHRGQesAGIvts~~~~~~~~~kG~Gmv~dVFte~~l~~L~g~~gIGH~RYs 78 (474)
T KOG0572|consen 1 ECGVFGIVAAGEAS--RLPELALGCVALQHRGQESAGIVTSGGRGRLYQIKGMGLVSDVFTEDKLSQLPGSIGIGHTRYS 78 (474)
T ss_pred CCcEEEEEecCccc--cCcHHHhhhHHHhhCCccccceEeecCCCceEEEeccchhhhhhcHHHHhhCccceeeeeeecc
Confidence 99999999865542 223455555799999999999998763 568999999
Q ss_pred eeCCC--CCCCCeec--CCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 53 IVDPT--SGDQPLYN--EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 53 ~~~~~--~~~QP~~~--~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
|.|.. .+.|||+. ..+.++++|||++.|+++||++|. |+.+.|.||+|+|+++
T Consensus 79 TaG~s~~~n~QPFvv~t~~G~lavAHNGnLVN~~~Lrr~l~~~g~~l~T~SDSElil~~ 137 (474)
T KOG0572|consen 79 TAGSSALSNVQPFVVNTPHGSLAVAHNGNLVNYKSLRRELLEEGVGLNTSSDSELILQL 137 (474)
T ss_pred cccccccccccceEeeccCceEEEeccCcccchHHHHHHHHhcCcccccCCcHHHHHHH
Confidence 99987 67899965 456699999999999999999997 8899999999999874
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Back Show alignment and domain information
Probab=99.90 E-value=3.7e-24 Score=152.20 Aligned_cols=104 Identities=69% Similarity=1.121 Sum_probs=92.2
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeCCceEeeeeeeeeCCCCCCCCeecCCCcEEEEEceeEcC
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHGDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNGEIYN 80 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~~~~l~~~rl~~~~~~~~~QP~~~~~~~~~l~~nGeI~N 80 (105)
||||++++.... .........+....+.|||||-+|.+......++|.||++++++.+.||+...++.+++..||||||
T Consensus 1 MCGI~Av~~~~~-~~~~~~~~l~ls~~~~hRgpd~sg~~~~~~~~l~heRLAIvdp~sg~QPi~~~~~~~~~~vNGEIYN 79 (543)
T KOG0571|consen 1 MCGILAVLGHED-SEAKKPKALELSRRIRHRGPDWSGLAQRNDNILGHERLAIVDPTSGAQPIVGEDGTYVVTVNGEIYN 79 (543)
T ss_pred CCceeeeecccc-hhhcChhhhhHHHhhcCCCCCcchhheeccccccccceeEecCCcCCcccccCCCcEEEEECceecc
Confidence 999999998432 2233455677778999999999999998888999999999999989999999888888889999999
Q ss_pred hHHHHHHhcCCCcccCChhhhhccC
Q 037758 81 HKQLREQLKNHQFRTGSDCEVIAHL 105 (105)
Q Consensus 81 ~~~L~~~l~g~~~~~~sD~evil~~ 105 (105)
+.+||+.+..++|+|.||+|+|++|
T Consensus 80 H~~Lr~~~~~~~~~T~sDcEvIi~l 104 (543)
T KOG0571|consen 80 HKKLREHCKDFEFQTGSDCEVIIHL 104 (543)
T ss_pred HHHHHHHhhhcccccCCCceeeeeh
Confidence 9999999988999999999999985
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase)
Back Show alignment and domain information
Probab=99.90 E-value=3.9e-23 Score=137.28 Aligned_cols=101 Identities=37% Similarity=0.579 Sum_probs=85.1
Q ss_pred eEEEEEEcCCCCchhHHHHH--HHHHhhccccCCCCCCceEeC---------------------------CceEeeeeee
Q 037758 2 CGILAVFGCIDNSQAKRSRI--IELSRRLRHRGPDWSGLHYHG---------------------------DCYLAHQRLA 52 (105)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~--~~ml~~l~~RG~d~~g~~~~~---------------------------~~~l~~~rl~ 52 (105)
|||+|+++...... .... ..|+..++|||||++|++..+ .++++|+|++
T Consensus 1 Cgi~g~~~~~~~~~--~~~~~~~~~~~~~~~rg~dg~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~H~R~a 78 (220)
T cd00352 1 CGIFGIVGADGAAS--LLLLLLLRGLAALEHRGPDGAGIAVYDGDGLFVEKRAGPVSDVALDLLDEPLKSGVALGHVRLA 78 (220)
T ss_pred CEEEEEECCCCcch--hhHHHHHHHHHhhcccCCccCCeEEECCCceEEEEeccchhhhhhhhhhhccCCCEEEEEeEee
Confidence 99999998654321 1222 479999999999999999875 5789999999
Q ss_pred eeCCC--CCCCCeecCCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhcc
Q 037758 53 IVDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAH 104 (105)
Q Consensus 53 ~~~~~--~~~QP~~~~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~ 104 (105)
+.+.. .+.|||....++++++|||+|+|+.+|+++|. ++.+++.||+|++++
T Consensus 79 t~g~~~~~n~hPf~~~~~~~~~~hNG~i~n~~~l~~~l~~~~~~~~~~tDse~i~~ 134 (220)
T cd00352 79 TNGLPSEANAQPFRSEDGRIALVHNGEIYNYRELREELEARGYRFEGESDSEVILH 134 (220)
T ss_pred ecCCCCCCCCCCcCcCCCCEEEEECcEEEcHHHHHHHHHHCCCeecCCCHHHHHHH
Confidence 99863 68899987657899999999999999999997 678899999999975
The glutaminase domain catalyzes an amide nitrogen transfer from glutamine to the appropriate substrate. In this process, glutamine is hydrolyzed to glutamic acid and ammonia. This domain is related to members of the Ntn (N-terminal nucleophile) hydrolase superfamily and is found at the N-terminus of enzymes such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). GLMS catalyzes the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine in amino sugar synthesis. GPATase catalyzes the first step in purine biosynthesis, an amide transfer from glutamine to PRPP, resulting in phosphoribosylamine, pyrophosphate and glutamate. Asparagine synthetase B synthesizes asparagine from aspartate and glutamine. Beta-LS catalyzes the format
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]
Back Show alignment and domain information
Probab=99.88 E-value=1.1e-22 Score=147.33 Aligned_cols=105 Identities=32% Similarity=0.465 Sum_probs=89.7
Q ss_pred CeEEEEEEcCCCCc--hhHHHHHHHHHhhccccCCCCCCceEeCC-----------------------------------
Q 037758 1 MCGILAVFGCIDNS--QAKRSRIIELSRRLRHRGPDWSGLHYHGD----------------------------------- 43 (105)
Q Consensus 1 McGI~g~~~~~~~~--~~~~~~~~~ml~~l~~RG~d~~g~~~~~~----------------------------------- 43 (105)
||||||+.++--.. ..+.+++.+.+++|.|||.|+.|++.+++
T Consensus 1 MCGIF~Y~N~l~~R~R~eIid~Li~GLqRLEYRGYDSaGiaId~~~~~s~~~~k~~GkVkaL~e~i~~q~~~l~~~f~sH 80 (670)
T KOG1268|consen 1 MCGIFGYCNFLIERTRGEIIDTLIDGLQRLEYRGYDSAGIAIDGDELESLLIYKQTGKVSSLKEEINNQNLNLDEKFISH 80 (670)
T ss_pred CcceeeeeccccCCcHHHHHHHHHHHHHHhhccCCCCCceeecCCcccchhhhcccCceeehhHHHhhcCcccceeeeee
Confidence 99999999864322 23456788889999999999999998763
Q ss_pred ceEeeeeeeeeCCC--CCCCCeec-CCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 44 CYLAHQRLAIVDPT--SGDQPLYN-EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 44 ~~l~~~rl~~~~~~--~~~QP~~~-~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
++++|+||+|.|.. .+.+|+.+ +.+.++++|||-|.|+++|+..|. |+.|++++|+|++.+|
T Consensus 81 ~gIAHTRWATHGvPs~~NsHP~rSd~~n~FvVVHNGIITNyk~lK~~L~~kG~~FESdTDTEciaKL 147 (670)
T KOG1268|consen 81 CGIAHTRWATHGVPSEVNCHPHRSDPSNEFVVVHNGIITNFKELKALLEKKGYVFESDTDTECIAKL 147 (670)
T ss_pred eeeeeeehhhcCCCCccCCCCCcCCCCCcEEEEEcCeeccHHHHHHHHHhcCceeecccchHHHHHH
Confidence 57999999999965 67899964 567799999999999999999998 9999999999998764
>PF13522 GATase_6: Glutamine amidotransferase domain
Back Show alignment and domain information
Probab=99.79 E-value=1.4e-19 Score=112.95 Aligned_cols=73 Identities=40% Similarity=0.692 Sum_probs=64.1
Q ss_pred CCCCCc--eEeCCceEeeeeeeeeCCC--CCCCCeecCCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 33 PDWSGL--HYHGDCYLAHQRLAIVDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 33 ~d~~g~--~~~~~~~l~~~rl~~~~~~--~~~QP~~~~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
||..++ +..++++|+|+|+++.|.. .+.|||.+..++++++|||+|+|+.+|+++|. |+.|++.||+|+|+++
T Consensus 1 pd~~~~~~~~~~~~~lgH~R~AT~G~~~~~~~hPf~~~~g~~~~~HNG~i~n~~~L~~~l~~~g~~~~~~tDSEii~~l 79 (133)
T PF13522_consen 1 PDFEGLASWLDGEAALGHTRYATVGSPTEENNHPFSNRDGRIALAHNGNIDNYKELREELGEKGHPFESDTDSEIIAAL 79 (133)
T ss_pred CChHHHHHhcCCCEEEEEeecCCCCCCCCcCCCCCcCCCCCEEEEECCeecCHHHHHHHHHHCCCcccCCCHHHHHHHH
Confidence 677777 7778899999999999976 45599966678899999999999999999997 8899999999999864
>TIGR03442 conserved hypothetical protein TIGR03442
Back Show alignment and domain information
Probab=99.67 E-value=5.4e-17 Score=110.79 Aligned_cols=99 Identities=23% Similarity=0.278 Sum_probs=75.4
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCC------------CCCCceEeC-----C--------------------
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGP------------DWSGLHYHG-----D-------------------- 43 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~------------d~~g~~~~~-----~-------------------- 43 (105)
||+|+|+++..- .....+.+....|.+|+. |++|+.... .
T Consensus 1 MCr~~gy~g~~~---~l~~~l~~~~~sL~~qs~~~~~~~~~~~~~DGwGia~~~~~~~~~~~~~k~~~pa~~d~~l~~l~ 77 (251)
T TIGR03442 1 MCRHLAYLGAPV---SLADLLLDPPHSLLVQSYQPREMRHGLVNADGFGVGWYDSGKDTVPFRYRSTQPIWNDINFASLA 77 (251)
T ss_pred CceEeeecCCCe---eHHHheeCCCcchHHhCcchhhhcCCCcCCCcceEEEecCCCCCCceEEeCCCccccChhHHHHH
Confidence 999999998631 133556666666666654 999987642 1
Q ss_pred ------ceEeeeeeeeeCC-C--CCCCCeecCCCcEEEEEceeEcChH-----HHHHHhc--CC-CcccCChhhhhcc
Q 037758 44 ------CYLAHQRLAIVDP-T--SGDQPLYNEDKTVVVTVNGEIYNHK-----QLREQLK--NH-QFRTGSDCEVIAH 104 (105)
Q Consensus 44 ------~~l~~~rl~~~~~-~--~~~QP~~~~~~~~~l~~nGeI~N~~-----~L~~~l~--g~-~~~~~sD~evil~ 104 (105)
.+++|.|+++.|. . .+.|||.. ++++++|||.|.|++ +|+.+|. ++ .+++.||+|++.+
T Consensus 78 ~~~~s~~~i~HvR~AT~G~~~~~~N~hPf~~--g~~~~aHNG~i~n~~~~~r~~L~~~l~~~~~~~~~g~TDSE~i~~ 153 (251)
T TIGR03442 78 RYVESGCVLAAVRSATVGMAIDESACAPFSD--GRWLFSHNGFVDNFRQTLYRPLRDRLPDIFYLAIEGSTDSAHLFA 153 (251)
T ss_pred hhcccceEEEEeeeCCCCCCcchhcCCCCCc--CCEEEEeCCccCCchhhhhHHHHhcCChhhccCCCCCCHHHHHHH
Confidence 4689999999984 3 58899975 689999999999997 5667775 53 7899999998865
Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see Pfam family pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein).
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A
Back Show alignment and domain information
Probab=99.58 E-value=5.8e-16 Score=95.64 Aligned_cols=57 Identities=47% Similarity=0.798 Sum_probs=26.4
Q ss_pred eeeeeeeCCCCCCCCee-cCCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhcc
Q 037758 48 HQRLAIVDPTSGDQPLY-NEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAH 104 (105)
Q Consensus 48 ~~rl~~~~~~~~~QP~~-~~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~ 104 (105)
|+||++.+...+.||+. +.+++++++|||+|||+++|+++|. |+.+.+.+|+|++++
T Consensus 1 h~rl~~~~~~~~~QP~~~~~~~~~~l~~nG~i~N~~eL~~~l~~~g~~~~~~~D~e~i~~ 60 (125)
T PF13537_consen 1 HVRLSTDDSDEGAQPFVSSEDGELVLVFNGEIYNREELRRELEERGHQFSSDSDSELILH 60 (125)
T ss_dssp ------------------------EEEEEEEES-HHHHHHTSSSS---S--SSHHHHHHH
T ss_pred CcccccccccccccccccccccCEEEEEEEEEEChHHHHHHhhhcccccCCCCCHHHHHH
Confidence 88999977778999998 5678899999999999999999997 688899999999865
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type
Back Show alignment and domain information
Probab=99.53 E-value=6.9e-15 Score=100.65 Aligned_cols=60 Identities=27% Similarity=0.300 Sum_probs=52.0
Q ss_pred ceEeeeeeeeeCCC--CCCCCeecCCCcEEEEEceeEcChHHHHHHhc--C-CCcccCChhhhhccC
Q 037758 44 CYLAHQRLAIVDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--N-HQFRTGSDCEVIAHL 105 (105)
Q Consensus 44 ~~l~~~rl~~~~~~--~~~QP~~~~~~~~~l~~nGeI~N~~~L~~~l~--g-~~~~~~sD~evil~~ 105 (105)
++++|+|+++.+.. .+.|||.. ++++++|||.|+|+.+|+..|. + +.+.+.||+|+++++
T Consensus 82 ~~l~H~R~At~G~~~~~n~hPf~~--~~~~~~HNG~i~n~~~l~~~l~~~~~~~~~~~tDSE~~~~l 146 (257)
T cd01908 82 LVLAHVRAATVGPVSLENCHPFTR--GRWLFAHNGQLDGFRLLRRRLLRLLPRLPVGTTDSELAFAL 146 (257)
T ss_pred EEEEEEecCCCCCCccccCCCccc--CCEEEEeCCccCCcchhhHHHHhcCccCCccCCHHHHHHHH
Confidence 46899999999954 57899976 4799999999999999999997 4 678999999998763
YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somwhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group
Back Show alignment and domain information
Probab=99.45 E-value=6.1e-13 Score=94.90 Aligned_cols=55 Identities=29% Similarity=0.420 Sum_probs=45.8
Q ss_pred ceEeeeeeeeeCCC--CCCCCeecCCCcEEEEEceeEcChHHHHHHhc--CCCccc----------------CChhhhhc
Q 037758 44 CYLAHQRLAIVDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRT----------------GSDCEVIA 103 (105)
Q Consensus 44 ~~l~~~rl~~~~~~--~~~QP~~~~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~----------------~sD~evil 103 (105)
.+++|+|++|.+.. ...|||. +++|||||-|...++.++. +..+.+ .||+|++.
T Consensus 197 ~~i~H~RysTnt~p~w~~AqPf~------~laHNGeInt~~~n~~~l~~r~~~~~~~~~~~~~~~~pi~~~~~SDS~~l~ 270 (361)
T PF00310_consen 197 FAIGHQRYSTNTFPSWENAQPFR------ALAHNGEINTIRGNRNWLEARGYKLNSPLFGDLKELLPIVNPGGSDSEVLD 270 (361)
T ss_dssp EEEEEEEE-SSSSCSGGGSSSEE------EEEEEEEETTHHHHHHHHHHHCCCBSSTTCGHHHCC-SSS-TTS-HHHHHH
T ss_pred EEEEEEecCCCCCCcchhcChHH------HhhhccccccHHHHHHHHHhhcccccCccccchhhcccccCCCCChHHHHH
Confidence 46899999999876 5789995 8999999999999999997 777766 99999885
Q ss_pred c
Q 037758 104 H 104 (105)
Q Consensus 104 ~ 104 (105)
+
T Consensus 271 ~ 271 (361)
T PF00310_consen 271 N 271 (361)
T ss_dssp H
T ss_pred H
Confidence 4
This catalytic activity is known as glutamine amidotransferase (GATase) (2.4.2 from EC) []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. On the basis of sequence similarities two classes of GATase domains have been identified [, ], class-I (also known as trpG-type) and class-II (also known as purF-type). Enzymes containing Class-II GATase domains include amido phosphoribosyltransferase (glutamine phosphoribosylpyrophosphate amidotransferase) (2.4.2.14 from EC), which catalyses the first step in purine biosynthesis (gene purF in bacteria, ADE4 in yeast); glucosamine--fructose-6-phosphate aminotransferase (2.6.1.16 from EC), which catalyses the formation of glucosamine 6-phosphate from fructose 6-phosphate and glutamine (gene glmS in Escherichia coli, nodM in Rhizobium, GFA1 in yeast); and asparagine synthetase (glutamine-hydrolizing) (6.3.5.4 from EC), which is responsible for the synthesis of asparagine from aspartate and glutamine. A cysteine is present at the N-terminal extremity of the mature form of all these enzymes. This domain is found in a number of cysteine peptidases belonging to MEROPS peptidase family C44 and their non-peptidase homologs. ; GO: 0008152 metabolic process; PDB: 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A 1GPH_1 1AO0_D 3OOJ_E 1JXA_C 2J6H_B ....
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism]
Back Show alignment and domain information
Probab=99.20 E-value=6.3e-11 Score=84.35 Aligned_cols=54 Identities=28% Similarity=0.356 Sum_probs=42.4
Q ss_pred eEeeeeeeeeCCC--CCCCCeecCCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhcc
Q 037758 45 YLAHQRLAIVDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAH 104 (105)
Q Consensus 45 ~l~~~rl~~~~~~--~~~QP~~~~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~ 104 (105)
+++|+|++|.-.. ..+|||. .+||||||-++.-.++.+. ++.+++.+|+|++.+
T Consensus 205 ~l~HsRFSTNT~p~W~~AHPfr------~lvHNGEInT~~gN~nwm~ar~~~~~s~~~~e~~a~ 262 (371)
T COG0067 205 ALVHTRFSTNTFPSWPLAHPFR------LLVHNGEINTYGGNRNWLEARGYKFESPTDGEVLAK 262 (371)
T ss_pred EEEEeccCCCCCCCCCccCcce------eeeecceecccccHHHHHHHhhcccccCccHHHHHH
Confidence 4677777665433 4567773 3599999999999999998 899999999998764
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type
Back Show alignment and domain information
Probab=99.20 E-value=1.4e-11 Score=81.60 Aligned_cols=44 Identities=27% Similarity=0.311 Sum_probs=37.6
Q ss_pred CCCeecCCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 60 DQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 60 ~QP~~~~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
.|+. ..+++++++||||||+.+|+++|. ++.|++.||+|||+++
T Consensus 44 ~~~~--~~~~~~iv~NGEIYN~~eLr~~L~~~g~~f~t~sDtEvll~~ 89 (199)
T cd01909 44 VQVA--RSETGTAYLIGELYNRDELRSLLGAGEGRSAVLGDAELLLLL 89 (199)
T ss_pred eeEe--eCCCEEEEEEEEEeCHHHHHHHHHhcCCCcCCCCHHHHHHHH
Confidence 3555 335799999999999999999997 7889999999999864
Carbapenam synthetase (CarA) is an ATP/Mg2+-dependent enzyme that catalyzes the formation of the beta-lactam ring in (5R)-carbapenem-3-carboxylic acid biosynthesis. CarA is homologous to beta-lactam synthetase (beta-LS), which is involved in the biosynthesis of clavulanic acid, a clinically important beta-lactamase inhibitor. CarA and beta-LS each have two distinct domains, an N-terminal Ntn hydrolase domain and a C-terminal synthetase domain, a domain architecture similar to that of the class-B asparagine synthetases (AS-B's). The N-terminal domain of these enzymes hydrolyzes glutamine to glutamate and ammonia. CarA forms a homotetramer while betaLS forms a heterodimer. The N-terminal folds of CarA and beta-LS are similar to those of other class II glutamine amidotransferases including lucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (
>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D
Back Show alignment and domain information
Probab=99.10 E-value=5.7e-11 Score=82.04 Aligned_cols=96 Identities=22% Similarity=0.249 Sum_probs=38.3
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhcccc------CCCCCCceEeCC-----------------------------ce
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHR------GPDWSGLHYHGD-----------------------------CY 45 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~R------G~d~~g~~~~~~-----------------------------~~ 45 (105)
||-++|+-..... . +...+..++.| =||++|+...++ ..
T Consensus 1 MC~Llg~s~~~p~-~-----~~~sl~~~~~~~~~~~~h~DGwGiawy~~~~~~~~k~~~pa~~~~~~~~l~~~~i~S~~~ 74 (271)
T PF13230_consen 1 MCRLLGMSSNRPT-D-----INFSLTSFAARGGKTPPHPDGWGIAWYDGGGPRVFKSPRPAWNSPNLRLLADYKIRSRLF 74 (271)
T ss_dssp -----------------------------------------EEEEEESSSS-EEEEESS-CCC-HHHHHHHH-H-EEEEE
T ss_pred Ccccccccccccc-c-----cccccccccccccCcCCCCCeeEEEEEeCCeEEEEECCCCCcCCchHHHHhhCCccCCEE
Confidence 9999999764321 1 11222333333 389999877543 35
Q ss_pred EeeeeeeeeCCC--CCCCCeecC--CCcEEEEEceeEcChHHHHHHhcCCCcccCChhhhhcc
Q 037758 46 LAHQRLAIVDPT--SGDQPLYNE--DKTVVVTVNGEIYNHKQLREQLKNHQFRTGSDCEVIAH 104 (105)
Q Consensus 46 l~~~rl~~~~~~--~~~QP~~~~--~~~~~l~~nGeI~N~~~L~~~l~g~~~~~~sD~evil~ 104 (105)
++|.|.++.|.. .+.|||... .++++++|||.|.+++.++... +.....||+|.+..
T Consensus 75 laHvR~AT~G~v~~~N~HPF~~~~~g~~w~FaHNG~i~~f~~~~~~~--~~~~G~TDSE~~F~ 135 (271)
T PF13230_consen 75 LAHVRAATQGAVSLENCHPFSRELWGRRWLFAHNGTIPGFEDILDDR--YQPVGTTDSEHAFC 135 (271)
T ss_dssp EEEE------------SS-EE----ETTEEEEEEEEETTGGGGHHHH--HT--S--HHHHHHH
T ss_pred EEEecccCCCCCCcccCCCceeccCCCcEEEEeCCccccccccCccc--cccCCCcHHHHHHH
Confidence 899999999865 578999753 3579999999999987776332 44678999998754
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Back Show alignment and domain information
Probab=99.10 E-value=2.7e-10 Score=82.36 Aligned_cols=78 Identities=26% Similarity=0.322 Sum_probs=57.3
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeCC----ceEeeeeeeeeCCCCCCCCeecCCCcEEEEEce
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHGD----CYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNG 76 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~~----~~l~~~rl~~~~~~~~~QP~~~~~~~~~l~~nG 76 (105)
||||+.-+.++.+.. ......+|...+..||||.......+. +.+.-.-|+..| ....||++.. +++++.|||
T Consensus 1 MCGI~~s~~~~~~l~-~~~i~~~l~~~~~~rg~d~~~~v~~~~~~y~~~f~~~vL~lrG-~~t~Qpvv~d-~~~vfl~NG 77 (520)
T KOG0573|consen 1 MCGIFLSVDKDLALN-SELISEALGLLIGNRGPDHSSKVCTDGKPYIVLFESSVLSLRG-YLTKQPVVED-DRYVFLFNG 77 (520)
T ss_pred CceEEEeecCCcccc-ccchhhHHHHHhhccCCCchhhhhhcccceeEEeecceEEEee-eeccCceecc-cceEEEecc
Confidence 999999998765432 345567888899999999987655443 334445577777 2468998664 558999999
Q ss_pred eEcCh
Q 037758 77 EIYNH 81 (105)
Q Consensus 77 eI~N~ 81 (105)
||||.
T Consensus 78 eIyn~ 82 (520)
T KOG0573|consen 78 EIYNG 82 (520)
T ss_pred eeccC
Confidence 99984
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum
Back Show alignment and domain information
Probab=98.64 E-value=4e-08 Score=66.00 Aligned_cols=41 Identities=15% Similarity=0.298 Sum_probs=33.8
Q ss_pred eecCCCcEEEEEceeEcChHHHHHHhcCCCcccCChhhhhccC
Q 037758 63 LYNEDKTVVVTVNGEIYNHKQLREQLKNHQFRTGSDCEVIAHL 105 (105)
Q Consensus 63 ~~~~~~~~~l~~nGeI~N~~~L~~~l~g~~~~~~sD~evil~~ 105 (105)
+....+++++++||||||+.+|++++ +. .++.||+|+|+++
T Consensus 66 l~~~~~~~~~vfnGeIyN~~eLr~~l-g~-~~t~sD~evIl~l 106 (224)
T cd01910 66 LFAVKDDIFCLFQGHLDNLGSLKQQY-GL-SKTANEAMLVIEA 106 (224)
T ss_pred EECCCCCEEEEEEeEEcCHHHHHHHh-CC-CCCCcHHHHHHHH
Confidence 44556789999999999999999998 34 3788999998753
Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type
Back Show alignment and domain information
Probab=98.54 E-value=7.9e-08 Score=69.77 Aligned_cols=55 Identities=24% Similarity=0.274 Sum_probs=43.4
Q ss_pred ceEeeeeeeeeCCC--CCCCCeecCCCcEEEEEceeEcChHHHHHHhc--CC-----------------CcccCChhhhh
Q 037758 44 CYLAHQRLAIVDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NH-----------------QFRTGSDCEVI 102 (105)
Q Consensus 44 ~~l~~~rl~~~~~~--~~~QP~~~~~~~~~l~~nGeI~N~~~L~~~l~--g~-----------------~~~~~sD~evi 102 (105)
.+++|+|++|.... ...|||. +|+|||||.|...+++++. .. ...+.||+|++
T Consensus 203 ~al~H~RfSTNT~p~W~~AqPfr------~laHNGEInT~~gnr~~m~are~~~~s~~~g~~~~~~~pi~~~~~SDS~~l 276 (413)
T cd00713 203 FALVHSRFSTNTFPSWPLAQPFR------YLAHNGEINTIRGNRNWMRAREGLLKSPLFGEDLKKLKPIINPGGSDSASL 276 (413)
T ss_pred EEEEEEecCCCCCCCcccCCcce------eEEEcccccCHHHHHHHHHHhhhhhcCccchhhHHhcCCcCCCCCChHHHH
Confidence 57899999998755 5789994 4899999999999999884 11 12358999987
Q ss_pred cc
Q 037758 103 AH 104 (105)
Q Consensus 103 l~ 104 (105)
.+
T Consensus 277 d~ 278 (413)
T cd00713 277 DN 278 (413)
T ss_pred HH
Confidence 54
GltS is a homodimer that synthesizes L-glutamate from 2-oxoglutarate and L-glutamine, an important step in ammonia assimilation in bacteria, cyanobacteria and plants. The N-terminal glutaminase domain catalyzes the hydrolysis of glutamine to glutamic acid and ammonia, and has a fold similar to that of other glutamine amidotransferases such as glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), and beta lactam synthetase (beta-LS), as well as the Ntn hydrolase folds of the proteasomal alpha and beta subunits.
>COG0121 Predicted glutamine amidotransferase [General function prediction only]
Back Show alignment and domain information
Probab=98.29 E-value=2.5e-06 Score=58.54 Aligned_cols=81 Identities=22% Similarity=0.241 Sum_probs=53.5
Q ss_pred CeEEEEEEcCCCCchhHHHHHHHHHhhcc---ccCCCCCCceEeCC----------------------------ceEeee
Q 037758 1 MCGILAVFGCIDNSQAKRSRIIELSRRLR---HRGPDWSGLHYHGD----------------------------CYLAHQ 49 (105)
Q Consensus 1 McGI~g~~~~~~~~~~~~~~~~~ml~~l~---~RG~d~~g~~~~~~----------------------------~~l~~~ 49 (105)
||-++|+.+..... .....+...... -.=+|++|+....+ ..++|.
T Consensus 1 MCrlLg~~g~~p~~---~~~s~~~~~~~~~~~~~h~DGwGia~y~~~~~~~yk~~~P~~~d~~~~~~~~~i~S~~viaHv 77 (252)
T COG0121 1 MCRLLGMHGNPPTD---SLFSQSGDPRRAGGTGQHGDGWGIAFYEGRGPRLYKSPLPAWEDIALLVLAYPIKSELVIAHV 77 (252)
T ss_pred CceeeeecCCCcch---hhhhhccchhhccCCCCCCCcceEEEEcCCccEEEeCCCccccchhhhhcccccCccEEEEEE
Confidence 99999998854211 111111111111 12368899876542 458999
Q ss_pred eeeeeCCC--CCCCCeecC--CCcEEEEEceeEcChHHH
Q 037758 50 RLAIVDPT--SGDQPLYNE--DKTVVVTVNGEIYNHKQL 84 (105)
Q Consensus 50 rl~~~~~~--~~~QP~~~~--~~~~~l~~nGeI~N~~~L 84 (105)
|.++.|.. .+.+||..+ ...+.++|||.|.+++.+
T Consensus 78 R~At~G~vs~~ntHPF~~~~~~~~~~FaHNG~l~~~~~~ 116 (252)
T COG0121 78 RKATQGEVSLSNTHPFTRELWGYIWLFAHNGQLDKFKLL 116 (252)
T ss_pred eccCCCcccccCCCCccccCCccceEEEecCcccCcccc
Confidence 99999955 578999763 335799999999998884
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Back Show alignment and domain information
Probab=94.43 E-value=0.043 Score=45.95 Aligned_cols=39 Identities=26% Similarity=0.244 Sum_probs=27.7
Q ss_pred ceEeeeeeeeeCCC--CCCCCeecCCCcEEEEEceeEcChHHHHHHh
Q 037758 44 CYLAHQRLAIVDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQL 88 (105)
Q Consensus 44 ~~l~~~rl~~~~~~--~~~QP~~~~~~~~~l~~nGeI~N~~~L~~~l 88 (105)
.++.|.|++|.-.. ...|||. .++|||||=-..--+.++
T Consensus 214 ~al~HsRFSTNT~PsW~~AqPFR------~laHNGEINTi~gN~nwm 254 (1485)
T PRK11750 214 ICVFHQRFSTNTLPRWPLAQPFR------YLAHNGEINTITGNRQWA 254 (1485)
T ss_pred EEEEECcCCCCCCCCCCcCCCce------eeeeccccccHHHHHHHH
Confidence 56899999977543 5678882 479999997555444444
>TIGR03823 FliZ flagellar regulatory protein FliZ
Back Show alignment and domain information
Probab=83.34 E-value=0.99 Score=28.99 Aligned_cols=19 Identities=16% Similarity=0.440 Sum_probs=16.2
Q ss_pred CcEEEEEceeEcChHHHHH
Q 037758 68 KTVVVTVNGEIYNHKQLRE 86 (105)
Q Consensus 68 ~~~~l~~nGeI~N~~~L~~ 86 (105)
+++.+|+||+|.|.+++.+
T Consensus 33 DRisLV~~gqiinK~~Ia~ 51 (168)
T TIGR03823 33 DRISLVFRGQIINKESISR 51 (168)
T ss_pred hheeeeecceeecHHHHHH
Confidence 4689999999999887765
FliZ is involved in the regulation of flagellar assembly and possibly also the down-regulation of the motile phenotype. FliZ interacts with the flagellar translational activator FlhCD complex.
>PRK11582 flagella biosynthesis protein FliZ; Provisional
Back Show alignment and domain information
Probab=83.26 E-value=1 Score=28.97 Aligned_cols=19 Identities=16% Similarity=0.392 Sum_probs=16.2
Q ss_pred CcEEEEEceeEcChHHHHH
Q 037758 68 KTVVVTVNGEIYNHKQLRE 86 (105)
Q Consensus 68 ~~~~l~~nGeI~N~~~L~~ 86 (105)
+++.+|+||+|.|.+++.+
T Consensus 33 DRisLV~~gqiinK~~Ia~ 51 (169)
T PRK11582 33 DRITLVFRGQIINKIAISR 51 (169)
T ss_pred hheeeeecceeecHHHHHH
Confidence 4689999999999887765
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 105
d1jgta2 206
d.153.1.1 (A:4-209) beta-Lactam synthetase {Strept
1e-21 d1q15a2 204
d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectob
7e-21 d1ct9a2 192
d.153.1.1 (A:1-192) Asparagine synthetase B, N-ter
9e-19 d1xffa_ 238
d.153.1.1 (A:) Glucosamine 6-phosphate synthase, N
6e-13 d1ecfa2 249
d.153.1.1 (A:1-249) Glutamine PRPP amidotransferas
1e-06 d1gph12 234
d.153.1.1 (1:1-234) Glutamine PRPP amidotransferas
7e-05
>d1jgta2 d.153.1.1 (A:4-209) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]} Length = 206
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: beta-Lactam synthetase
species: Streptomyces clavuligerus [TaxId: 1901]
Score = 82.5 bits (203), Expect = 1e-21
Identities = 19/89 (21%), Positives = 27/89 (30%), Gaps = 4/89 (4%)
Query: 16 AKRSRIIELSRRLRHRGPDWSGLHYHGDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVN 75
R+ + R H D L H D + + L T V+
Sbjct: 17 GGRAPGPVFATRGSHTDIDTPQGERSLAATLVHAPSVAPDR-AVARSLTGAPTTAVL--A 73
Query: 76 GEIYNHKQLREQLKNHQFRTGSDCEVIAH 104
GEIYN +L L D E++
Sbjct: 74 GEIYNRDELLSVL-PAGPAPEGDAELVLR 101
>d1q15a2 d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]} Length = 204
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: beta-Lactam synthetase
species: Pectobacterium carotovorum [TaxId: 554]
Score = 80.4 bits (198), Expect = 7e-21
Identities = 13/82 (15%), Positives = 27/82 (32%), Gaps = 4/82 (4%)
Query: 28 LRHRGPDWSGLHYHGDCYLAHQRLAIVD-PTSGDQPLYN-EDKTVVVTVNGEIYNHKQLR 85
+ ++G D + D + L+ + E + + G +YN L
Sbjct: 6 VVYKGSDTDINNIQRDFDGKGEALSNGYLFIEQNGHYQKCEMERGTAYLIGSLYNRTFLI 65
Query: 86 EQL--KNHQFRTGSDCEVIAHL 105
+ +D E++A L
Sbjct: 66 GLAGVWEGEAYLANDAELLALL 87
>d1ct9a2 d.153.1.1 (A:1-192) Asparagine synthetase B, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 192
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Asparagine synthetase B, N-terminal domain
species: Escherichia coli [TaxId: 562]
Score = 75.0 bits (183), Expect = 9e-19
Identities = 55/104 (52%), Positives = 72/104 (69%), Gaps = 1/104 (0%)
Query: 3 GILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHGDCYLAHQRLAIVDPTSGDQP 62
I VF ++ R + +ELSR +RHRGPDWSG++ + LAH+RL+IVD +G QP
Sbjct: 2 SIFGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVNAGAQP 61
Query: 63 LYNEDKTVVVTVNGEIYNHKQLREQL-KNHQFRTGSDCEVIAHL 105
LYN+ KT V+ VNGEIYNH+ LR + +QF+TGSDCEVI L
Sbjct: 62 LYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEVILAL 105
>d1xffa_ d.153.1.1 (A:) Glucosamine 6-phosphate synthase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 238
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Glucosamine 6-phosphate synthase, N-terminal domain
species: Escherichia coli [TaxId: 562]
Score = 60.2 bits (145), Expect = 6e-13
Identities = 38/133 (28%), Positives = 55/133 (41%), Gaps = 34/133 (25%)
Query: 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGL----------------------- 38
CGI+ D ++ ++E RRL +RG D +GL
Sbjct: 1 CGIVGAIAQRDVAE----ILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQ 56
Query: 39 -----HYHGDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNGEIYNHKQLREQL--KNH 91
HG +AH R A S + + +VV NG I NH+ LRE+L + +
Sbjct: 57 AAEEHPLHGGTGIAHTRWATHGEPSEVNAHPHVSEHIVVVHNGIIENHEPLREELKARGY 116
Query: 92 QFRTGSDCEVIAH 104
F + +D EVIAH
Sbjct: 117 TFVSETDTEVIAH 129
>d1ecfa2 d.153.1.1 (A:1-249) Glutamine PRPP amidotransferase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 249
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Glutamine PRPP amidotransferase, N-terminal domain
species: Escherichia coli [TaxId: 562]
Score = 42.9 bits (100), Expect = 1e-06
Identities = 28/138 (20%), Positives = 46/138 (33%), Gaps = 38/138 (27%)
Query: 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGL----------------------- 38
CGI G +S I + L+HRG D +G+
Sbjct: 1 CGI---VGIAGVMPVNQS-IYDALTVLQHRGQDAAGIITIDANNCFRLRKANGLVSDVFE 56
Query: 39 -----HYHGDCYLAHQRLAIVDPTS---GDQPLYNEDKTVVVTVNGEIYNHKQLREQL-- 88
G+ + H R +S N + + NG + N +LR++L
Sbjct: 57 ARHMQRLQGNMGIGHVRYPTAGSSSASEAQPFYVNSPYGITLAHNGNLTNAHELRKKLFE 116
Query: 89 -KNHQFRTGSDCEVIAHL 105
K T SD E++ ++
Sbjct: 117 EKRRHINTTSDSEILLNI 134
>d1gph12 d.153.1.1 (1:1-234) Glutamine PRPP amidotransferase, N-terminal domain {Bacillus subtilis [TaxId: 1423]} Length = 234
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Glutamine PRPP amidotransferase, N-terminal domain
species: Bacillus subtilis [TaxId: 1423]
Score = 37.7 bits (86), Expect = 7e-05
Identities = 29/138 (21%), Positives = 48/138 (34%), Gaps = 38/138 (27%)
Query: 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGL----------------------- 38
CG+ ++G + Q L+HRG + +G+
Sbjct: 1 CGVFGIWGHEEAPQ----ITYYGLHSLQHRGQEGAGIVATDGEKLTAHKGQGLITEVFQN 56
Query: 39 ----HYHGDCYLAHQRLAIVDPT-----SGDQPLYNEDKTVVVTVNGEIYNHKQLREQL- 88
G + H R A + ++ + NG + N QL++QL
Sbjct: 57 GELSKVKGKGAIGHVRYATAGGGGYENVQPLLFRSQNNGSLALAHNGNLVNATQLKQQLE 116
Query: 89 -KNHQFRTGSDCEVIAHL 105
+ F+T SD EV+AHL
Sbjct: 117 NQGSIFQTSSDTEVLAHL 134
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 105
d1ct9a2 192
Asparagine synthetase B, N-terminal domain {Escher
99.96 d1xffa_ 238
Glucosamine 6-phosphate synthase, N-terminal domai
99.96 d1ecfa2 249
Glutamine PRPP amidotransferase, N-terminal domain
99.95 d1gph12 234
Glutamine PRPP amidotransferase, N-terminal domain
99.94 d1q15a2 204
beta-Lactam synthetase {Pectobacterium carotovorum
99.76 d1jgta2 206
beta-Lactam synthetase {Streptomyces clavuligerus
99.71 d1te5a_ 253
Hypothetical protein YafJ (PA1307) {Pseudomonas ae
99.5 d1ofda3 430
Alpha subunit of glutamate synthase, N-terminal do
97.69 d1ea0a3 422
Alpha subunit of glutamate synthase, N-terminal do
97.66
>d1ct9a2 d.153.1.1 (A:1-192) Asparagine synthetase B, N-terminal domain {Escherichia coli [TaxId: 562]}
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Asparagine synthetase B, N-terminal domain
species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=5.6e-30 Score=166.04 Aligned_cols=104 Identities=53% Similarity=0.884 Sum_probs=91.8
Q ss_pred eEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeCCceEeeeeeeeeCCCCCCCCeecCCCcEEEEEceeEcCh
Q 037758 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHGDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNGEIYNH 81 (105)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~~~~l~~~rl~~~~~~~~~QP~~~~~~~~~l~~nGeI~N~ 81 (105)
+||+|+++.+.........+.+|+.+|+|||||+.|+|..+++.+||+||++++.+.+.||....++.++++|||||||+
T Consensus 1 s~I~Gi~~~~~~~~~~~~~~~~m~~~l~hRGpD~~~~~~~~~~~lgh~Rlsi~~~~~~~~~~~~~~~~~~lv~NGeI~N~ 80 (192)
T d1ct9a2 1 ASIFGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVNAGAQPLYNQQKTHVLAVNGEIYNH 80 (192)
T ss_dssp CEEEEEESCCSCHHHHHHHHHHHHHTTGGGCBTEEEEEECSSEEEEEEECCCSCTTTCCSSEECTTSCEEEEEEEEETTH
T ss_pred CeEEEEEeCCCChHHHHHHHHHHHHHhcccCCCCCCeEEeCCEEEEEEEEEEccccCCcccccccCCceEEEecCccchh
Confidence 69999998765443346789999999999999999999999999999999999988777887777788999999999999
Q ss_pred HHHHHHhc-CCCcccCChhhhhccC
Q 037758 82 KQLREQLK-NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 82 ~~L~~~l~-g~~~~~~sD~evil~~ 105 (105)
.+|+++|. ...+.+.||+|+++++
T Consensus 81 ~~l~~~l~~~~~~~s~sDtevll~~ 105 (192)
T d1ct9a2 81 QALRAEYGDRYQFQTGSDCEVILAL 105 (192)
T ss_dssp HHHHHHHTTTSCCCSCCTTHHHHHH
T ss_pred HHHHHHHhcCcccCCCCcHHHHHHH
Confidence 99999997 6778889999999863
>d1xffa_ d.153.1.1 (A:) Glucosamine 6-phosphate synthase, N-terminal domain {Escherichia coli [TaxId: 562]}
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class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Glucosamine 6-phosphate synthase, N-terminal domain
species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=3.7e-29 Score=166.55 Aligned_cols=98 Identities=39% Similarity=0.516 Sum_probs=83.6
Q ss_pred eEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeC----------------------------CceEeeeeeee
Q 037758 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHG----------------------------DCYLAHQRLAI 53 (105)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~----------------------------~~~l~~~rl~~ 53 (105)
|||+|+++..+. ...+..|+.+|+|||||++|+++.+ ..++||+||+|
T Consensus 1 CGI~G~~~~~~~----~~~l~~~l~~lqhRG~Ds~Gi~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~g~~~igH~R~aT 76 (238)
T d1xffa_ 1 CGIVGAIAQRDV----AEILLEGLRRLEYRGYDSAGLAVVDAEGHMTRLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWAT 76 (238)
T ss_dssp CEEEEEECSSCC----HHHHHHHHHHHGGGCCSEEEEEEECTTCCEEEEEEESCHHHHHHHHHHSCCCCSEEEEEEECCS
T ss_pred CEEEEEECChhH----HHHHHHHHHHhcccCccccCEEEEcCCCCEEEEeeccccccccccccccccCCcEEEeeecccc
Confidence 999999986532 3567889999999999999998753 25789999999
Q ss_pred eCCC--CCCCCeecCCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhccC
Q 037758 54 VDPT--SGDQPLYNEDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 54 ~~~~--~~~QP~~~~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~~ 105 (105)
.+.. .++||+.. ++++++|||+|||+.+|+++|. |+.|.+.||+|+++++
T Consensus 77 ~g~~~~~n~~p~~~--~~~~~vhNG~I~N~~~L~~~L~~~g~~f~s~sDtEvi~~l 130 (238)
T d1xffa_ 77 HGEPSEVNAHPHVS--EHIVVVHNGIIENHEPLREELKARGYTFVSETDTEVIAHL 130 (238)
T ss_dssp SSCSSTTTSSCEEE--TTEEEEEEEEETTHHHHHHHHHHTTCCCCSCCSHHHHHHH
T ss_pred cccccccCCccccC--CcEEEEEcCcccCHHHHHHHHHHcCCCcccCCcchhhhhh
Confidence 9976 45678755 5799999999999999999997 8999999999999863
>d1ecfa2 d.153.1.1 (A:1-249) Glutamine PRPP amidotransferase, N-terminal domain {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Glutamine PRPP amidotransferase, N-terminal domain
species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=3.2e-28 Score=163.04 Aligned_cols=100 Identities=27% Similarity=0.502 Sum_probs=83.1
Q ss_pred eEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeCC----------------------------ceEeeeeeee
Q 037758 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHGD----------------------------CYLAHQRLAI 53 (105)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~~----------------------------~~l~~~rl~~ 53 (105)
|||+|+++..+. ...+..||.+|+|||||++|++..++ .++||+||+|
T Consensus 1 CGI~G~~~~~~~----~~~l~~gL~~LqhRG~DsaGIa~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~g~~gIGHtR~aT 76 (249)
T d1ecfa2 1 CGIVGIAGVMPV----NQSIYDALTVLQHRGQDAAGIITIDANNCFRLRKANGLVSDVFEARHMQRLQGNMGIGHVRYPT 76 (249)
T ss_dssp CEEEEEECSSCC----HHHHHHHHHHTGGGCCSEEEEEEECTTSCEEEEEEESCHHHHCCHHHHHHCCSSEEEEEEECCB
T ss_pred CEEEEEEcChhh----HHHHHHHHHHHhccCcCeeEEEEEECCCEEEEEEcCCccchhhhhhhhccCCCceeeeEeeccc
Confidence 999999986432 35678899999999999999987542 4799999999
Q ss_pred eCCC--CCCCCee-cCCCcEEEEEceeEcChHHHHHH-hc--CCCcccCChhhhhccC
Q 037758 54 VDPT--SGDQPLY-NEDKTVVVTVNGEIYNHKQLREQ-LK--NHQFRTGSDCEVIAHL 105 (105)
Q Consensus 54 ~~~~--~~~QP~~-~~~~~~~l~~nGeI~N~~~L~~~-l~--g~~~~~~sD~evil~~ 105 (105)
.|.. .+.||+. ..++++++||||+|+|+.+|++. |. |+.|.++||+||++++
T Consensus 77 ~G~~~~~nahP~~~~~~~~~~lvhNG~I~Ny~eL~~~~l~~~g~~f~s~tDtEvi~~l 134 (249)
T d1ecfa2 77 AGSSSASEAQPFYVNSPYGITLAHNGNLTNAHELRKKLFEEKRRHINTTSDSEILLNI 134 (249)
T ss_dssp TTBCTTSCCSCEEECSSSCEEEEEEEEETTHHHHHHHHHHHHCCCCCSSCHHHHHHHH
T ss_pred CCCCchhcccccccCCCCcEEEEeeeeeccHHHHHHHHHHhcCccccccchHHHHHHH
Confidence 9865 4679964 45577999999999999999665 44 8999999999999763
>d1gph12 d.153.1.1 (1:1-234) Glutamine PRPP amidotransferase, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Glutamine PRPP amidotransferase, N-terminal domain
species: Bacillus subtilis [TaxId: 1423]
Probab=99.94 E-value=4.3e-27 Score=156.04 Aligned_cols=99 Identities=29% Similarity=0.478 Sum_probs=83.8
Q ss_pred eEEEEEEcCCCCchhHHHHHHHHHhhccccCCCCCCceEeC---------------------------CceEeeeeeeee
Q 037758 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGPDWSGLHYHG---------------------------DCYLAHQRLAIV 54 (105)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~d~~g~~~~~---------------------------~~~l~~~rl~~~ 54 (105)
|||+|+++.++ ....+..|+.+|+|||||++|++..+ ..++||+|+++.
T Consensus 1 CGI~G~~~~~~----~~~~~~~~l~~lqhRG~Ds~Gi~~~~~~~~~~~k~~g~~~~~~~~~~~~~~~g~~~igh~r~~t~ 76 (234)
T d1gph12 1 CGVFGIWGHEE----APQITYYGLHSLQHRGQEGAGIVATDGEKLTAHKGQGLITEVFQNGELSKVKGKGAIGHVRYATA 76 (234)
T ss_dssp CEEEEEESCTT----HHHHHHHHHHTTGGGCSSCEEEEEECSSCEEEEEESSCHHHHTCSSSTTTCCCSEEEEEECCCSS
T ss_pred CeEEEEECCcc----cHHHHHHHHHHhhcCCcccCcEEEEcCCEEEEEecCCcccccchhhhcccCCCceeeeeeccccc
Confidence 99999998653 23567789999999999999998754 367999999999
Q ss_pred CCC--CCCCCeec---CCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhhcc
Q 037758 55 DPT--SGDQPLYN---EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVIAH 104 (105)
Q Consensus 55 ~~~--~~~QP~~~---~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evil~ 104 (105)
+.. .+.||+.. ..+.++++|||+|||+.+|+++|. |+.|.+++|+|++++
T Consensus 77 g~~~~~~~~p~~~~~~~~~~~~lvhNG~I~N~~eL~~~l~~~g~~f~~~td~e~~~~ 133 (234)
T d1gph12 77 GGGGYENVQPLLFRSQNNGSLALAHNGNLVNATQLKQQLENQGSIFQTSSDTEVLAH 133 (234)
T ss_dssp SCBCGGGSSCEEEBCTTTCCEEEEEEEEETTHHHHHHHHHHTTCCBSSCCHHHHHHH
T ss_pred CCchhccccccceeccccceEEEEecccccCHHHHHHHHHHcCCeeeeecchhHHHH
Confidence 865 46788743 356799999999999999999997 899999999999875
>d1q15a2 d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: beta-Lactam synthetase
species: Pectobacterium carotovorum [TaxId: 554]
Probab=99.76 E-value=1.9e-20 Score=121.50 Aligned_cols=79 Identities=16% Similarity=0.057 Sum_probs=68.6
Q ss_pred hccccCCCCCCceEeCCceEeeeeeeeeCCC-CCCCCeec-CCCcEEEEEceeEcChHHHHHHhc--CCCcccCChhhhh
Q 037758 27 RLRHRGPDWSGLHYHGDCYLAHQRLAIVDPT-SGDQPLYN-EDKTVVVTVNGEIYNHKQLREQLK--NHQFRTGSDCEVI 102 (105)
Q Consensus 27 ~l~~RG~d~~g~~~~~~~~l~~~rl~~~~~~-~~~QP~~~-~~~~~~l~~nGeI~N~~~L~~~l~--g~~~~~~sD~evi 102 (105)
.+.|||||..+....+....+|.||++.+.. ...||+.. ..+++++++||||||+++||++|. ++.|.+.||+|||
T Consensus 5 c~~~rgpd~~~~~~~~~~~~~~~rLsi~~l~~~~n~~~~~~~~~ry~~~~nGEIYN~~~lr~~l~~~~~~~~~~sDtEvl 84 (204)
T d1q15a2 5 CVVYKGSDTDINNIQRDFDGKGEALSNGYLFIEQNGHYQKCEMERGTAYLIGSLYNRTFLIGLAGVWEGEAYLANDAELL 84 (204)
T ss_dssp EEEETCCHHHHHHHHTTSCEEEEEETTEEEEEETTCCEEEEECSSSEEEEEECCSCHHHHHHHHTTTCGGGGGCCHHHHH
T ss_pred eEEEeCCCccchhhhhhhcchhhhhcchhhhhcccCCCCcccCCcEEEEEEEEEcCHHHHHHHHHHcCCCccCCChHHHH
Confidence 5789999998877778888899999999876 57788865 567899999999999999999997 7889999999999
Q ss_pred ccC
Q 037758 103 AHL 105 (105)
Q Consensus 103 l~~ 105 (105)
+++
T Consensus 85 l~~ 87 (204)
T d1q15a2 85 ALL 87 (204)
T ss_dssp HHH
T ss_pred HHH
Confidence 863
>d1jgta2 d.153.1.1 (A:4-209) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: beta-Lactam synthetase
species: Streptomyces clavuligerus [TaxId: 1901]
Probab=99.71 E-value=3.7e-19 Score=115.69 Aligned_cols=76 Identities=22% Similarity=0.201 Sum_probs=66.2
Q ss_pred hhccccCCCCCCceEeCCceEeeeeeeeeCCCCCCCCeecCCCcEEEEEceeEcChHHHHHHhcCCCcccCChhhhhccC
Q 037758 26 RRLRHRGPDWSGLHYHGDCYLAHQRLAIVDPTSGDQPLYNEDKTVVVTVNGEIYNHKQLREQLKNHQFRTGSDCEVIAHL 105 (105)
Q Consensus 26 ~~l~~RG~d~~g~~~~~~~~l~~~rl~~~~~~~~~QP~~~~~~~~~l~~nGeI~N~~~L~~~l~g~~~~~~sD~evil~~ 105 (105)
....||+||..+.+...+.+|+|+++.+.+.. ..||+.. .+.+++|||||||+.||+++| ++.+.+.||+|||+++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~h~~~~~~~~~-~~qp~~~--~~~~~v~NGeIyN~~eL~~~l-g~~~~s~sDtEvil~l 102 (206)
T d1jgta2 27 TRGSHTDIDTPQGERSLAATLVHAPSVAPDRA-VARSLTG--APTTAVLAGEIYNRDELLSVL-PAGPAPEGDAELVLRL 102 (206)
T ss_dssp SCSEEEECCCTTGGGSCEEEEEECTTSCGGGG-EEEECSS--SSEEEEEEEEESCHHHHHHTS-CSSCCCSSHHHHHHHH
T ss_pred hhhhccCCCCCCcccccceeecccccccCCcc-cCcccCC--CCEEEEEEEEecCHHHHHHHh-CCCCCCCCchHHHHHH
Confidence 45689999999999888999999998877654 6899966 358999999999999999999 6888999999999864
>d1te5a_ d.153.1.1 (A:) Hypothetical protein YafJ (PA1307) {Pseudomonas aeruginosa [TaxId: 287]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Hypothetical protein YafJ (PA1307)
species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.50 E-value=1.6e-16 Score=105.53 Aligned_cols=94 Identities=19% Similarity=0.241 Sum_probs=70.5
Q ss_pred eEEEEEEcCCCCchhHHHHHHHHHhhccccCC------CCCCceEeCC-----------------------------ceE
Q 037758 2 CGILAVFGCIDNSQAKRSRIIELSRRLRHRGP------DWSGLHYHGD-----------------------------CYL 46 (105)
Q Consensus 2 cGI~g~~~~~~~~~~~~~~~~~ml~~l~~RG~------d~~g~~~~~~-----------------------------~~l 46 (105)
|+|+|+...... . +...+..++|||+ |++|+++.++ ++|
T Consensus 1 C~l~g~~s~~p~-~-----i~~~l~~l~~r~~~~~~h~DGwGia~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~s~~~i 74 (253)
T d1te5a_ 1 CELLGMSANVPT-D-----IVFSFTGLMQRGGGTGPHRDGWGIAFYEGRGVRLFQDPLASVDSEVARLVQRFPIKSETVI 74 (253)
T ss_dssp CCEEEEEEEEEE-E-----CEEEECCCCCCSSSSSSSBCEEEEEEEETTEEEEEEECSBSSCCHHHHHHHHSCCEEEEEE
T ss_pred CEEEEEEcCCCc-c-----HHHHHHHHHhcCCcCCCCCCeEEEEEEeCCeEEEEEcCceeccCHHHHHHhhCcCCCcEEE
Confidence 999999864321 1 2234577899985 7899877542 468
Q ss_pred eeeeeeeeCCC--CCCCCeec--CCCcEEEEEceeEcChHHHHHHhcCCCcccCChhhhhcc
Q 037758 47 AHQRLAIVDPT--SGDQPLYN--EDKTVVVTVNGEIYNHKQLREQLKNHQFRTGSDCEVIAH 104 (105)
Q Consensus 47 ~~~rl~~~~~~--~~~QP~~~--~~~~~~l~~nGeI~N~~~L~~~l~g~~~~~~sD~evil~ 104 (105)
||+|+++.|.. .+.|||.. ..++++++|||.|.|+.+|+..+ ..++.+|+|++.+
T Consensus 75 gHvR~AT~G~~~~~N~hPf~~~~~~~~~~f~HNG~i~n~~~l~~~~---~~~g~tDse~~~~ 133 (253)
T d1te5a_ 75 GHIRQANVGKVGLSNTHPFIRELGGRYWTFAHNGQLADFQPKPGFY---RPVGETDSEAAFC 133 (253)
T ss_dssp EEEEECCCSCCSGGGCSCEEEEETTEEEEEEEESCBSSCCCCCCSS---CCSSCCHHHHHHH
T ss_pred EEeeeccCCCCccccCCceEEEcCCCCEEEEEeeeEechhhhhhhh---cccCCCccchhHH
Confidence 99999999865 46899854 45679999999999999887654 4567899998753
>d1ofda3 d.153.1.1 (A:1-430) Alpha subunit of glutamate synthase, N-terminal domain {Synechocystis sp. [TaxId: 1143]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Alpha subunit of glutamate synthase, N-terminal domain
species: Synechocystis sp. [TaxId: 1143]
Probab=97.69 E-value=4.9e-05 Score=53.07 Aligned_cols=30 Identities=27% Similarity=0.345 Sum_probs=24.0
Q ss_pred ceEeeeeeeeeCCC--CCCCCeecCCCcEEEEEceeEc
Q 037758 44 CYLAHQRLAIVDPT--SGDQPLYNEDKTVVVTVNGEIY 79 (105)
Q Consensus 44 ~~l~~~rl~~~~~~--~~~QP~~~~~~~~~l~~nGeI~ 79 (105)
.++.|.|++|.-.. ..+|||. .++|||||=
T Consensus 200 ~al~H~RFSTNT~PsW~lAQPfR------~laHNGEIN 231 (430)
T d1ofda3 200 FAVYHRRFSTNTMPKWPLAQPMR------LLGHNGEIN 231 (430)
T ss_dssp EEEEEECCCSSSCCCGGGSSCCS------SEEEEECCT
T ss_pred EEEEEEEEecCCCCcchhcCccc------cccCCcccc
Confidence 45899999987654 5789993 489999996
>d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase, N-terminal domain {Azospirillum brasilense [TaxId: 192]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Alpha subunit of glutamate synthase, N-terminal domain
species: Azospirillum brasilense [TaxId: 192]
Probab=97.66 E-value=0.00014 Score=50.58 Aligned_cols=32 Identities=28% Similarity=0.302 Sum_probs=24.9
Q ss_pred ceEeeeeeeeeCCC--CCCCCeecCCCcEEEEEceeEcCh
Q 037758 44 CYLAHQRLAIVDPT--SGDQPLYNEDKTVVVTVNGEIYNH 81 (105)
Q Consensus 44 ~~l~~~rl~~~~~~--~~~QP~~~~~~~~~l~~nGeI~N~ 81 (105)
.++.|.|++|.-.. ...|||. .++|||||=-.
T Consensus 204 ~al~H~RFSTNT~PsW~lAQPFR------~laHNGEINTi 237 (422)
T d1ea0a3 204 FAIYHQRYSTNTFPTWPLAQPFR------MLAHNGEINTV 237 (422)
T ss_dssp EEEEEECCCSCSCCCSTTSSCCS------SEEEEECCTTH
T ss_pred EEEEEeeeeccCCCchhhcCcee------eecCCCchhhh
Confidence 46899999987644 5789993 58999999633
