Citrus Sinensis ID: 037765

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150---
MGTAVILPNHDENGAVHDPLLPWLQSAKKALDEWYSGKDSGATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGSKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPLDKLEEALALFIDRLSERLQK
ccccccccccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcc
ccHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccc
mgtavilpnhdengavhdpllpWLQSAKKALDewysgkdsgatDLYKLLSNCINtfkhhsqykndIRFLKIWFLYLEGSKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIgisrkaeplDKLEEALALFIDRLSERLQK
MGTAVILpnhdengavhDPLLPWLQSAKKALDEWYSGKDSGATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGSKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGIsrkaepldKLEEALALFIDRLSERLQK
MGTAVILPNHDENGAVHDPLLPWLQSAKKALDEWYSGKDSGATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGSKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPLDKLEEALALFIDRLSERLQK
**************AVHDPLLPWLQSAKKALDEWYSGKDSGATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGSKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPLDKLEEALALFID********
****VILPNHDENGAVHDPLLPWLQSAKKALDEW*********DLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGSKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPLDKLEEALALFI**L******
MGTAVILPNHDENGAVHDPLLPWLQSAKKALDEWYSGKDSGATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGSKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPLDKLEEALALFIDRLSERLQK
***AVILPNHDENGAVHDPLLPWLQSAKKALDEWYSGKDSGATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGSKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPLDKLEEALALFIDRLSE****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGTAVILPNHDENGAVHDPLLPWLQSAKKALDEWYSGKDSGATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGSKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPLDKLEEALALFIDRLSERLQK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query153 2.2.26 [Sep-21-2011]
Q54CV5 1306 Probable inactive serine/ yes no 0.869 0.101 0.340 6e-12
O59767 310 Mitotic spindle checkpoin yes no 0.856 0.422 0.295 8e-11
P47074 515 Spindle assembly checkpoi yes no 0.888 0.264 0.306 3e-09
O08901 1058 Mitotic checkpoint serine yes no 0.679 0.098 0.317 3e-07
O43683 1085 Mitotic checkpoint serine yes no 0.686 0.096 0.333 3e-06
P41695 1021 Checkpoint serine/threoni no no 0.725 0.108 0.284 5e-06
Q9Z1S0 1052 Mitotic checkpoint serine no no 0.725 0.105 0.271 2e-05
>sp|Q54CV5|BUB1_DICDI Probable inactive serine/threonine-protein kinase bub1 OS=Dictyostelium discoideum GN=bub1 PE=3 SV=1 Back     alignment and function desciption
 Score = 69.7 bits (169), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 2/135 (1%)

Query: 18  DPLLPWLQSAKKALDEWYSGKDSGATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLE 77
           DP+  WL+  K     +  G  +    L  LL  C   F    +YKND R+L+IW  Y +
Sbjct: 58  DPIDNWLKYIKWVQQSYPGG--NMKEQLIVLLERCTRLFLSTEKYKNDPRYLRIWITYAD 115

Query: 78  GSKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPLDKLE 137
             +D  +VF  +E   I    SLLY+  AI  E  G +  A   ++ GI RKA+P+++L+
Sbjct: 116 MCRDPIEVFSFLEVQRIGFYLSLLYEARAIVYENKGNYEQADKSFKQGIERKAQPIERLQ 175

Query: 138 EALALFIDRLSERLQ 152
           +    F  RL  RL+
Sbjct: 176 QKHLDFERRLIARLK 190

Dictyostelium discoideum (taxid: 44689)
>sp|O59767|MAD3_SCHPO Mitotic spindle checkpoint component mad3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mad3 PE=1 SV=2 Back     alignment and function description
>sp|P47074|MAD3_YEAST Spindle assembly checkpoint component MAD3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MAD3 PE=1 SV=1 Back     alignment and function description
>sp|O08901|BUB1_MOUSE Mitotic checkpoint serine/threonine-protein kinase BUB1 OS=Mus musculus GN=Bub1 PE=2 SV=1 Back     alignment and function description
>sp|O43683|BUB1_HUMAN Mitotic checkpoint serine/threonine-protein kinase BUB1 OS=Homo sapiens GN=BUB1 PE=1 SV=1 Back     alignment and function description
>sp|P41695|BUB1_YEAST Checkpoint serine/threonine-protein kinase BUB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BUB1 PE=1 SV=2 Back     alignment and function description
>sp|Q9Z1S0|BUB1B_MOUSE Mitotic checkpoint serine/threonine-protein kinase BUB1 beta OS=Mus musculus GN=Bub1b PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query153
297832662 500 predicted protein [Arabidopsis lyrata su 0.934 0.286 0.583 3e-44
240254494 525 catalytic domain of protein kinase and M 0.895 0.260 0.608 3e-44
359485399 529 PREDICTED: mitotic checkpoint serine/thr 0.947 0.274 0.609 1e-42
302143317 552 unnamed protein product [Vitis vinifera] 0.947 0.262 0.526 3e-39
20198039232 predicted protein [Arabidopsis thaliana] 0.849 0.560 0.565 9e-39
255553689 586 mitotic checkpoint serine/threonine-prot 0.882 0.230 0.578 4e-37
449438133 532 PREDICTED: mitotic checkpoint serine/thr 0.888 0.255 0.525 5e-32
356544986 531 PREDICTED: checkpoint serine/threonine-p 0.856 0.246 0.511 8e-32
356515164 529 PREDICTED: checkpoint serine/threonine-p 0.856 0.247 0.488 8e-28
414886837 553 TPA: hypothetical protein ZEAMMB73_71681 0.888 0.245 0.410 3e-20
>gi|297832662|ref|XP_002884213.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297330053|gb|EFH60472.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
 Score =  182 bits (463), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 84/144 (58%), Positives = 115/144 (79%), Gaps = 1/144 (0%)

Query: 9   NHDENGAVHDPLLPWLQSAKKALDEWYSGKDSGATDLYKLLSNCINTFKHHSQYKNDIRF 68
           N  E+ +  DPL PWL   K ++++ YSGK+SG  DL KLL +CI+T+K  ++Y+ND+RF
Sbjct: 8   NAGESESAGDPLFPWLMKIKNSMEDLYSGKNSGE-DLDKLLYDCISTYKEDTRYRNDLRF 66

Query: 69  LKIWFLYLEGSKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISR 128
           LKIWFLYL+G +D+E+V+RE+EE EIC GHSLLY+WYAIFLE+ G WR A+ VYQ G+SR
Sbjct: 67  LKIWFLYLDGCEDFERVYREVEENEICIGHSLLYEWYAIFLEVKGLWRRANSVYQTGLSR 126

Query: 129 KAEPLDKLEEALALFIDRLSERLQ 152
           KAEP D+L+EA +LF+ R+S+R +
Sbjct: 127 KAEPFDRLKEAHSLFLQRISKRTK 150

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|240254494|ref|NP_179656.4| catalytic domain of protein kinase and Mad3-BUB1-I domain-containing protein [Arabidopsis thaliana] gi|330251957|gb|AEC07051.1| catalytic domain of protein kinase and Mad3-BUB1-I domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|359485399|ref|XP_002274770.2| PREDICTED: mitotic checkpoint serine/threonine-protein kinase BUB1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|302143317|emb|CBI21878.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|20198039|gb|AAM15365.1| predicted protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255553689|ref|XP_002517885.1| mitotic checkpoint serine/threonine-protein kinase bub1 and bubr1, putative [Ricinus communis] gi|223542867|gb|EEF44403.1| mitotic checkpoint serine/threonine-protein kinase bub1 and bubr1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449438133|ref|XP_004136844.1| PREDICTED: mitotic checkpoint serine/threonine-protein kinase BUB1-like [Cucumis sativus] gi|449526259|ref|XP_004170131.1| PREDICTED: mitotic checkpoint serine/threonine-protein kinase BUB1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356544986|ref|XP_003540927.1| PREDICTED: checkpoint serine/threonine-protein kinase BUB1-like [Glycine max] Back     alignment and taxonomy information
>gi|356515164|ref|XP_003526271.1| PREDICTED: checkpoint serine/threonine-protein kinase BUB1-like [Glycine max] Back     alignment and taxonomy information
>gi|414886837|tpg|DAA62851.1| TPA: hypothetical protein ZEAMMB73_716819 [Zea mays] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query153
TAIR|locus:2827363 525 AT2G20635 [Arabidopsis thalian 0.882 0.257 0.617 1.5e-44
TAIR|locus:2169692 471 AT5G05510 "AT5G05510" [Arabido 0.869 0.282 0.330 3.8e-16
POMBASE|SPCC1795.01c 310 mad3 "mitotic spindle checkpoi 0.875 0.432 0.296 2.9e-12
DICTYBASE|DDB_G0292676 1306 bub1 "BUB family protein kinas 0.869 0.101 0.348 3.2e-12
CGD|CAL0003517 900 BUB1 [Candida albicans (taxid: 0.692 0.117 0.366 5.4e-12
UNIPROTKB|Q5AFC9 900 BUB1 "Likely protein kinase" [ 0.692 0.117 0.366 5.4e-12
ASPGD|ASPL0000009709 1216 sldA [Emericella nidulans (tax 0.908 0.114 0.307 7.9e-12
SGD|S000003550 515 MAD3 "Subunit of the spindle-a 0.908 0.269 0.298 1.2e-10
MGI|MGI:1100510 1058 Bub1 "budding uninhibited by b 0.882 0.127 0.287 1e-08
UNIPROTKB|C9JQA4146 BUB1 "Mitotic checkpoint serin 0.915 0.958 0.291 1.6e-08
TAIR|locus:2827363 AT2G20635 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 84/136 (61%), Positives = 111/136 (81%)

Query:    15 AVHDPLLPWLQSAKKALDEWYSGKDSGATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFL 74
             A  DPL PWL   K ++++ Y+GK+SG  DL KLL +CI+T+K  S+Y+ND+RFLKIWFL
Sbjct:     8 AAGDPLFPWLMEIKNSMEDLYAGKNSGY-DLDKLLFDCISTYKKDSRYRNDLRFLKIWFL 66

Query:    75 YLEGSKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPLD 134
             YLEG +D+E+V+RE+EE EIC GHSLLY+WYAIFLE+ G WR A+ VYQ G+SRKAEP D
Sbjct:    67 YLEGREDFERVYREIEETEICKGHSLLYEWYAIFLEVKGLWRRANSVYQTGLSRKAEPFD 126

Query:   135 KLEEALALFIDRLSER 150
             +L+EA +LF+ R+S+R
Sbjct:   127 RLKEAHSLFLQRISKR 142
GO:0004672 "protein kinase activity" evidence=IEA
GO:0004674 "protein serine/threonine kinase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006468 "protein phosphorylation" evidence=IEA
GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA
TAIR|locus:2169692 AT5G05510 "AT5G05510" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPCC1795.01c mad3 "mitotic spindle checkpoint protein Mad3" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0292676 bub1 "BUB family protein kinase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
CGD|CAL0003517 BUB1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5AFC9 BUB1 "Likely protein kinase" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
ASPGD|ASPL0000009709 sldA [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
SGD|S000003550 MAD3 "Subunit of the spindle-assembly checkpoint complex" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
MGI|MGI:1100510 Bub1 "budding uninhibited by benzimidazoles 1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|C9JQA4 BUB1 "Mitotic checkpoint serine/threonine-protein kinase BUB1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.7.11.1LOW CONFIDENCE prediction!
3rd Layer2.7.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query153
smart00777124 smart00777, Mad3_BUB1_I, Mad3/BUB1 hoMad3/BUB1 hom 6e-20
pfam08311124 pfam08311, Mad3_BUB1_I, Mad3/BUB1 homology region 1e-18
>gnl|CDD|214817 smart00777, Mad3_BUB1_I, Mad3/BUB1 hoMad3/BUB1 homology region 1 Back     alignment and domain information 
 Score = 79.2 bits (196), Expect = 6e-20
 Identities = 41/109 (37%), Positives = 60/109 (55%), Gaps = 4/109 (3%)

Query: 18  DPLLPWLQSAKKALDEWYSG-KDSGATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYL 76
           DPL  WL+  K   + +  G K+SG   L  LL  CI  F+   +YKND R+LKIW  Y 
Sbjct: 19  DPLDLWLRYIKWTEENYPQGGKESG---LLTLLERCIRYFEDDERYKNDPRYLKIWLKYA 75

Query: 77  EGSKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIG 125
           E   +  ++F+ +    I T  +L Y+ +A  LE  G+++ A  VYQ+G
Sbjct: 76  EYCDEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQLG 124

Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p. Length = 124
>gnl|CDD|191994 pfam08311, Mad3_BUB1_I, Mad3/BUB1 homology region 1 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 153
smart00777125 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 100.0
PF08311126 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro 100.0
KOG1166 974 consensus Mitotic checkpoint serine/threonine prot 100.0
PF15297 353 CKAP2_C: Cytoskeleton-associated protein 2 C-termi 97.26
KOG1915 677 consensus Cell cycle control protein (crooked neck 96.7
PF05843 280 Suf: Suppressor of forked protein (Suf); InterPro: 96.11
KOG1915 677 consensus Cell cycle control protein (crooked neck 96.08
KOG2047 835 consensus mRNA splicing factor [RNA processing and 95.94
KOG1914 656 consensus mRNA cleavage and polyadenylation factor 94.77
PF02631121 RecX: RecX family; InterPro: IPR003783 RecX is a p 94.05
PF05843 280 Suf: Suppressor of forked protein (Suf); InterPro: 93.84
KOG2047 835 consensus mRNA splicing factor [RNA processing and 92.87
KOG1258 577 consensus mRNA processing protein [RNA processing 92.37
COG5107 660 RNA14 Pre-mRNA 3'-end processing (cleavage and pol 91.82
KOG10701710 consensus rRNA processing protein Rrp5 [RNA proces 91.49
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 90.85
PRK14136309 recX recombination regulator RecX; Provisional 90.5
KOG1914 656 consensus mRNA cleavage and polyadenylation factor 90.42
cd0268176 MIT_calpain7_1 MIT: domain contained within Microt 90.17
PF1342844 TPR_14: Tetratricopeptide repeat 90.0
cd0268275 MIT_AAA_Arch MIT: domain contained within Microtub 89.9
smart0074577 MIT Microtubule Interacting and Trafficking molecu 89.71
PF1318134 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ 89.55
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 89.23
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 88.67
PRK14134283 recX recombination regulator RecX; Provisional 88.11
cd0268377 MIT_1 MIT: domain contained within Microtubule Int 87.81
PF0421269 MIT: MIT (microtubule interacting and transport) d 87.56
KOG1070 1710 consensus rRNA processing protein Rrp5 [RNA proces 86.67
cd0265675 MIT MIT: domain contained within Microtubule Inter 86.41
smart0002834 TPR Tetratricopeptide repeats. Repeats present in 86.29
KOG0495 913 consensus HAT repeat protein [RNA processing and m 85.98
PF1317636 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ 85.52
PRK00117157 recX recombination regulator RecX; Reviewed 84.96
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 83.8
PF08424 321 NRDE-2: NRDE-2, necessary for RNA interference; In 82.88
PRK14135263 recX recombination regulator RecX; Provisional 82.83
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 82.51
cd0267875 MIT_VPS4 MIT: domain contained within Microtubule 82.35
PF0051534 TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 80.85
smart0038633 HAT HAT (Half-A-TPR) repeats. Present in several R 80.51
cd0268475 MIT_2 MIT: domain contained within Microtubule Int 80.49
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1 Back     alignment and domain information 
Probab=100.00  E-value=2.6e-53  Score=317.95  Aligned_cols=120  Identities=31%  Similarity=0.548  Sum_probs=116.1

Q ss_pred             cccccccc-ccCCCCCCcHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHhccCccccccHHHHHHHHHHhcccCCH
Q 037765            4 AVILPNHD-ENGAVHDPLLPWLQSAKKALDEWYSGKDSGATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGSKDY   82 (153)
Q Consensus         4 ~~~~e~~i-~~~~~dDPL~~w~~yI~w~~e~~p~g~~~~~~~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~~~d~   82 (153)
                      .++||.+| +.++|||||++|++||+|++++||+|  +++|+|.+||||||++|+++++||||+|||||||+||++|+||
T Consensus         5 r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g--~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~~dp   82 (125)
T smart00777        5 RQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQG--GKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNCDEP   82 (125)
T ss_pred             HHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCC--CchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhcCCH
Confidence            46799999 88999999999999999999999987  4679999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 037765           83 EKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIG  125 (153)
Q Consensus        83 ~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~G  125 (153)
                      .+||+||+++|||+++|+||++||.++|.+|++++|++||++|
T Consensus        83 ~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~G  125 (125)
T smart00777       83 RELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQLG  125 (125)
T ss_pred             HHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHcc
Confidence            9999999999999999999999999999999999999999998

Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division Back     alignment and domain information
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus Back     alignment and domain information
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins Back     alignment and domain information
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2047 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] Back     alignment and domain information
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein [] Back     alignment and domain information
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins Back     alignment and domain information
>KOG2047 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information
>KOG1258 consensus mRNA processing protein [RNA processing and modification] Back     alignment and domain information
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] Back     alignment and domain information
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PRK14136 recX recombination regulator RecX; Provisional Back     alignment and domain information
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] Back     alignment and domain information
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules Back     alignment and domain information
>PF13428 TPR_14: Tetratricopeptide repeat Back     alignment and domain information
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules Back     alignment and domain information
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain Back     alignment and domain information
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>PRK14134 recX recombination regulator RecX; Provisional Back     alignment and domain information
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules Back     alignment and domain information
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking Back     alignment and domain information
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] Back     alignment and domain information
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules Back     alignment and domain information
>smart00028 TPR Tetratricopeptide repeats Back     alignment and domain information
>KOG0495 consensus HAT repeat protein [RNA processing and modification] Back     alignment and domain information
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A Back     alignment and domain information
>PRK00117 recX recombination regulator RecX; Reviewed Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function Back     alignment and domain information
>PRK14135 recX recombination regulator RecX; Provisional Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules Back     alignment and domain information
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>smart00386 HAT HAT (Half-A-TPR) repeats Back     alignment and domain information
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query153
4aez_C223 Crystal Structure Of Mitotic Checkpoint Complex Len 6e-12
2lah_A160 Solution Nmr Structure Of Mitotic Checkpoint Serine 3e-07
4a1g_A152 The Crystal Structure Of The Human Bub1 Tpr Domain 3e-07
3esl_A202 Crystal Structure Of The Conserved N-Terminal Domai 5e-07
3si5_A176 Kinetochore-Bubr1 Kinase Complex Length = 176 2e-04
2wvi_A164 Crystal Structure Of The N-Terminal Domain Of Bubr1 2e-04
>pdb|4AEZ|C Chain C, Crystal Structure Of Mitotic Checkpoint Complex Length = 223 Back     alignment and structure 
Iteration: 1

 Score = 66.6 bits (161), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 15  AVHDPLLPWLQSAKKALDEWYSGKDSGATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFL 74
           ++ DPL  W+   K  LD +  G ++  + L  LL  C   F  +  YK+D+R+L+IW  
Sbjct: 67  SLDDPLQVWIDYIKWTLDNFPQG-ETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQ 125
Query: 75  YLEGSKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPLD 134
           Y+    +  ++F  +    I    S+ Y+ YA + E  G ++ A  VYQ G   KA+P  
Sbjct: 126 YVNYIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185
Query: 135 KLEEALALFIDR 146
           + ++    F  R
Sbjct: 186 RFQQKYQQFTHR 197
>pdb|2LAH|A Chain A, Solution Nmr Structure Of Mitotic Checkpoint SerineTHREONINE-Protein Kinase Bub1 N-Terminal Domain From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr5460a (Methods Development) Length = 160 Back     alignment and structure
>pdb|4A1G|A Chain A, The Crystal Structure Of The Human Bub1 Tpr Domain In Complex With The Ki Motif Of Knl1 Length = 152 Back     alignment and structure
>pdb|3ESL|A Chain A, Crystal Structure Of The Conserved N-Terminal Domain Of The Mitotic Checkpoint Component Bub1 Length = 202 Back     alignment and structure
>pdb|3SI5|A Chain A, Kinetochore-Bubr1 Kinase Complex Length = 176 Back     alignment and structure
>pdb|2WVI|A Chain A, Crystal Structure Of The N-Terminal Domain Of Bubr1 Length = 164 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query153
4aez_C223 MAD3, mitotic spindle checkpoint component MAD3; c 6e-38
4a1g_A152 Mitotic checkpoint serine/threonine-protein kinas; 7e-37
2wvi_A164 Mitotic checkpoint serine/threonine-protein kinase 1e-36
3esl_A202 Checkpoint serine/threonine-protein kinase BUB1; m 3e-35
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Length = 223 Back     alignment and structure
 Score =  127 bits (321), Expect = 6e-38
 Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 1/140 (0%)

Query: 11  DENGAVHDPLLPWLQSAKKALDEWYSGKDSGATDLYKLLSNCINTFKHHSQYKNDIRFLK 70
           + + ++ DPL  W+   K  LD +  G+   +  L  LL  C   F  +  YK+D+R+L+
Sbjct: 63  ETSESLDDPLQVWIDYIKWTLDNFPQGETKTS-GLVTLLERCTREFVRNPLYKDDVRYLR 121

Query: 71  IWFLYLEGSKDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKA 130
           IW  Y+    +  ++F  +    I    S+ Y+ YA + E  G ++ A  VYQ G   KA
Sbjct: 122 IWMQYVNYIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKA 181

Query: 131 EPLDKLEEALALFIDRLSER 150
           +P  + ++    F  R  E 
Sbjct: 182 KPFLRFQQKYQQFTHRWLEF 201
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A Length = 152 Back     alignment and structure
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A Length = 164 Back     alignment and structure
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} Length = 202 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query153
2wvi_A164 Mitotic checkpoint serine/threonine-protein kinase 100.0
4a1g_A152 Mitotic checkpoint serine/threonine-protein kinas; 100.0
3esl_A202 Checkpoint serine/threonine-protein kinase BUB1; m 100.0
4aez_C223 MAD3, mitotic spindle checkpoint component MAD3; c 100.0
4h7y_A161 Dual specificity protein kinase TTK; mitotic check 99.49
2ond_A 308 Cleavage stimulation factor 77 kDa subunit; HAT do 98.02
4e6h_A 679 MRNA 3'-END-processing protein RNA14; HAT domain, 97.99
2ooe_A 530 Cleavage stimulation factor 77 kDa subunit; HAT do 97.38
4e6h_A 679 MRNA 3'-END-processing protein RNA14; HAT domain, 97.1
2ooe_A 530 Cleavage stimulation factor 77 kDa subunit; HAT do 96.87
2uy1_A 493 Cleavage stimulation factor 77; RNA-binding protei 96.86
2uy1_A 493 Cleavage stimulation factor 77; RNA-binding protei 96.09
2ond_A308 Cleavage stimulation factor 77 kDa subunit; HAT do 95.1
3rkv_A162 Putative peptidylprolyl isomerase; structural geno 90.82
2w2u_A83 Hypothetical P60 katanin; hydrolase transport comp 89.81
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 89.35
3edt_B 283 KLC 2, kinesin light chain 2; superhelical, struct 89.24
2v6y_A83 AAA family ATPase, P60 katanin; MIT, VPS4, archaea 88.66
2xev_A129 YBGF; tetratricopeptide, alpha-helical, metal bind 88.0
3c1d_A159 Protein ORAA, regulatory protein RECX; tandem repe 87.85
1elw_A118 TPR1-domain of HOP; HOP, TPR-domain, peptide-compl 86.19
3k9i_A117 BH0479 protein; putative protein binding protein, 86.12
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 85.9
3ma5_A100 Tetratricopeptide repeat domain protein; NESG, str 84.94
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 84.83
4a5x_A86 MITD1, MIT domain-containing protein 1; protein tr 84.18
3dfg_A162 Xcrecx, regulatory protein RECX; RECX RECA, homolo 84.1
2v6x_A85 Vacuolar protein sorting-associated protein 4; pro 84.0
3d5l_A221 Regulatory protein RECX; PSI-II, NYSGXRC, DNA repa 83.73
2fbn_A198 70 kDa peptidylprolyl isomerase, putative; sulfur 82.32
3e3v_A177 Regulatory protein RECX; PSI-II, NYSGXRC, structur 81.84
3nf1_A311 KLC 1, kinesin light chain 1; TPR, structural geno 81.64
2cpt_A117 SKD1 protein, vacuolar sorting protein 4B; MIT, he 80.85
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 80.66
1wfd_A93 Hypothetical protein 1500032H18; MIT domain, struc 80.37
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A Back     alignment and structure
Probab=100.00  E-value=4.2e-62  Score=379.03  Aligned_cols=146  Identities=21%  Similarity=0.337  Sum_probs=139.5

Q ss_pred             ccccccccccCCCCCCcHHHHHHHHHHHHhcCCCCCCChhhHHHHHHHHHHHhccCccccccHHHHHHHHHHhcccCCHH
Q 037765            4 AVILPNHDENGAVHDPLLPWLQSAKKALDEWYSGKDSGATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGSKDYE   83 (153)
Q Consensus         4 ~~~~e~~i~~~~~dDPL~~w~~yI~w~~e~~p~g~~~~~~~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~~~d~~   83 (153)
                      -++||++|.+++|||||++|++||+|++++||+|+  ++|+|.+||||||++|+++++|+||+|||||||+||++|+||.
T Consensus         3 r~~fE~~i~~~~gdDPL~~w~~yIkW~e~~~p~~~--~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~~~p~   80 (164)
T 2wvi_A            3 KRAFEYEIRFYTGNDPLDVWDRYISWTEQNYPQGG--KESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLCNEPL   80 (164)
T ss_dssp             THHHHHHCCCCCSSCTHHHHHHHHHHHHHHCCC------CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHCSCHH
T ss_pred             HHHHHHHHhhcCCCCChHHHHHHHHHHHHHCcCCC--ccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhcCCHH
Confidence            36799999999999999999999999999999975  5789999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhh
Q 037765           84 KVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPLDKLEEALALFIDRLSERL  151 (153)
Q Consensus        84 ~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~~~L~~~~~~F~~R~~~~~  151 (153)
                      +||+||+++|||+++|+||++||.++|..|++++|++||++||+++|+|+++|+++|++|+.||++++
T Consensus        81 ~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~~~~F~~R~~~~~  148 (164)
T 2wvi_A           81 DMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQHRQFQARVSRQT  148 (164)
T ss_dssp             HHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999876
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A Back     alignment and structure
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} Back     alignment and structure
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A Back     alignment and structure
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Back     alignment and structure
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B Back     alignment and structure
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Back     alignment and structure
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Back     alignment and structure
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius} Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Back     alignment and structure
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Back     alignment and structure
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B* Back     alignment and structure
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} Back     alignment and structure
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli} Back     alignment and structure
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Back     alignment and structure
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Back     alignment and structure
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Back     alignment and structure
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens} Back     alignment and structure
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV} Back     alignment and structure
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae} Back     alignment and structure
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri} Back     alignment and structure
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Back     alignment and structure
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius} Back     alignment and structure
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Back     alignment and structure
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1 Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Back     alignment and structure
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query153
d2onda1 308 Cleavage stimulation factor 77 kDa subunit CSTF3 { 98.67
d2onda1308 Cleavage stimulation factor 77 kDa subunit CSTF3 { 97.8
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 88.27
d1wfda_93 Hypothetical protein 1500032H18Rik {Mouse (Mus mus 86.53
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.67  E-value=1.6e-07  Score=73.30  Aligned_cols=119  Identities=14%  Similarity=0.170  Sum_probs=87.3

Q ss_pred             cHHHHHHHHHHHHhcCCCCCCC---hhhHHHHHHHHHHHhccCccccccHHHHHHHHHHhccc-----------------
Q 037765           20 LLPWLQSAKKALDEWYSGKDSG---ATDLYKLLSNCINTFKHHSQYKNDIRFLKIWFLYLEGS-----------------   79 (153)
Q Consensus        20 L~~w~~yI~w~~e~~p~g~~~~---~~~l~~lLErc~~~f~~~~~Y~nD~RyLkiWi~Ya~~~-----------------   79 (153)
                      |+.|.+||+| +.+-|.-....   .+-+..+.|||+..+...         -+||+.|+++.                 
T Consensus         8 ~~~W~~yi~~-E~~~~~~~~~~~~~~~Rv~~vyerAl~~~~~~---------~~lW~~y~~~~~~~~~~~~~~~~~~~~~   77 (308)
T d2onda1           8 VDMWKKYIQW-EKSNPLRTEDQTLITKRVMFAYEQCLLVLGHH---------PDIWYEAAQYLEQSSKLLAEKGDMNNAK   77 (308)
T ss_dssp             HHHHHHHHHH-HHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHHHHTSCCHHHH
T ss_pred             HHHHHHHHHH-HHhCcccccccchhHHHHHHHHHHHHHHCCCC---------HHHHHHHHHHHHHcCchHHHHHHHhhcc
Confidence            6899999999 55545421111   123666899999987543         36999999863                 


Q ss_pred             ---CCHHHHHHHHHhCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Q 037765           80 ---KDYEKVFREMEELEICTGHSLLYQWYAIFLELNGKWRDAHMVYQIGISRKAEPLDKLEEALALFIDRLSE  149 (153)
Q Consensus        80 ---~d~~~if~~L~~~~IG~~~AlfYe~wA~~lE~~~~~~~A~~I~~~Gi~~~A~P~~~L~~~~~~F~~R~~~  149 (153)
                         +...++|+.-.... ......+|..+|.+++..|++++|..||..++.....+...+-..+..|..|...
T Consensus        78 ~~~~~a~~i~~ral~~~-~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~  149 (308)
T d2onda1          78 LFSDEAANIYERAISTL-LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG  149 (308)
T ss_dssp             HHHHHHHHHHHHHHTTT-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHC
T ss_pred             cchHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCC
Confidence               23456776554332 3456778999999999999999999999999998777767777888888877543
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure