Citrus Sinensis ID: 037769

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
Protein Sequence
FQVDCSSPFHHFSFKTTHSCPPEQSLALLQFKNNTYVRSANYSFCNEENSSPKTNSWTEGTDCCSWDGVTCDNVTGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL
Secondary Structure (PSIPRED)
cEEEcccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEccccccEEEEEccccccccccccccccccccccccccEEccccccccccccHHHcccccccEEEcccccccccccccccccccccEEEccccccccccccHHHHHcccccccEEEccccccEEcccccc
Secondary Structure Prediction (SSPRO)
cEEEHHHHHHHccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEcccccEEEEEEEEccccccccccccccccccccccEEEEccccccccccccHHHccccccEEEEcccccccccccHHHHcccccEEEEcccccccccccccHHHHHcccccEEEEcccccccccccccc
Coil and Loop (DISEMBL)
fqvdcsspfhhfsfktthscppeqslaLLQFKNNTYVRSANysfcneensspktnswtegtdccswdgvtcdnvtgnvigldLYSSCSwlvgtiddnstlFHLSHLQSLNLAYSnflgsqlspefgrlkeltylnlsasnfgglvpyemshssklthldLSFCVLTIEHRTFDLLASNLTKLSLLYLGatnmslikpfsl
Flexible Loop (DISEMBL)
FQVDCSSPFHHFsfktthscppEQSLALLQFKNNTYVRSANYSFCNEENSSPKTNSWTEGTDCCSWDGVTCDNVTGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLylgatnmslikpfsl
Low Complexity Region (SEG)
FQVDCSSPFHHFSFKTTHSCPPEQSLALLQFKNNTYVRSANYSFCNEENSSPKTNSWTEGTDCCSWDGVTCDNVTGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDllasnltklsllylGATNMSLIKPFSL
Disordered region (IsUnstruct)
***********F*F**********SLALLQFKNNTYVRSANYSFCN*********SWTEGTDCCSWDGVTCDNVTGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLI*****
Disordered Region (DISOPRED)
FQVDCSSPFHHFSF********EQSLALLQFKNNTYVRSANYSFCNEENSSPKTNSWTEGTDCCSWDGVTCDNVTGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL
Disordered Region (DISEMBL)
FQVDCSSPFHHFSFKTTHSCPPEQSLALLQFKNNTYVRSANYSFC*************EGTDCCSWDGVTCDNVTGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL
Disordered Region (DISPRO)
FQVDCSSPFHHFSFKTTHSCPPEQSLALLQFKNNTYVRSANYSFCNEENSSPKTNSWTEGTDCCSWDGVTCDNVTGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKP***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
FQVDCSSPFHHFSFKTTHSCPPEQSLALLQFKNNTYVRSANYSFCNEENSSPKTNSWTEGTDCCSWDGVTCDNVTGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	200	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.75	0.177	0.333	5e-15
C0LGT6	1031	LRR receptor-like serine/	no	no	0.78	0.151	0.356	3e-10
A7PW81	333	Polygalacturonase inhibit	no	no	0.63	0.378	0.322	8e-10
Q9M2Z1	1002	Leucine-rich repeat recep	no	no	0.8	0.159	0.370	2e-09
Q05091	330	Polygalacturonase inhibit	N/A	no	0.635	0.384	0.32	6e-09
O49545	1003	Leucine-rich repeat recep	no	no	0.8	0.159	0.360	1e-08
Q9SD62	1025	Putative receptor-like pr	no	no	0.52	0.101	0.361	3e-08
Q8RY65	635	Protein NSP-INTERACTING K	no	no	0.655	0.206	0.340	4e-08
Q6XAT2	967	LRR receptor-like serine/	no	no	0.5	0.103	0.4	2e-07
Q9M5J8	330	Polygalacturonase inhibit	no	no	0.525	0.318	0.345	4e-07

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score = 80.9 bits (198), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 87/159 (54%), Gaps = 9/159 (5%)

Query: 10  HHFSFKTTHSCPPEQSLALLQFKNNTYVRSANYSFCNEENSSPKTNSWTEGTDCCSWDGV 69
           H  +  + H C  +Q  ALL+F+   +  +A++   N+         W + TDCC W+GV
Sbjct: 24  HSLASSSPHFCRDDQRDALLEFRG-EFPINASWHIMNQWRGP-----WNKSTDCCLWNGV 77

Query: 70  TCDNVTGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLK 129
           TC++ +G VI LD+ +  ++L   +  NS+LF L +L+ L+L   N  G ++    G L 
Sbjct: 78  TCNDKSGQVISLDIPN--TFLNNYLKTNSSLFKLQYLRHLDLTNCNLYG-EIPSSLGNLS 134

Query: 130 ELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIE 168
            LT +NL  + F G +P  + + ++L HL L+  VLT E
Sbjct: 135 HLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTGE 173

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score = 64.7 bits (156), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/174 (35%), Positives = 89/174 (51%), Gaps = 18/174 (10%)

Query: 27  ALLQFKNNTYVRSANYSFCNEENSSPKTNSWTEGTDCCSWDGVTCDNVTGNVIGLDLYSS 86
           ALL+FK          S  +E N      SW   +  C+W GVTC      VI L+L   
Sbjct: 34  ALLEFK----------SQVSENNKREVLASWNHSSPFCNWIGVTCGRRRERVISLNL--G 81

Query: 87  CSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVP 146
              L G I  + ++ +LS L+ LNLA ++F GS +  + GRL  L YLN+S +   G +P
Sbjct: 82  GFKLTGVI--SPSIGNLSFLRLLNLADNSF-GSTIPQKVGRLFRLQYLNMSYNLLEGRIP 138

Query: 147 YEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL 200
             +S+ S+L+ +DLS   L   H     L S L+KL++L L   N++   P SL
Sbjct: 139 SSLSNCSRLSTVDLSSNHLG--HGVPSELGS-LSKLAILDLSKNNLTGNFPASL 189

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|A7PW81|PGIP_VITVI Polygalacturonase inhibitor OS=Vitis vinifera GN=pgip PE=1 SV=1

 Score = 63.5 bits (153), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 65/149 (43%), Gaps = 23/149 (15%)

Query: 17  THSCPPEQSLALLQFK---NNTYVRSANYSFCNEENSSPKTNSWTEGTDCCSWDGVTCDN 73
           +  C P+    LLQ K   +N Y+ +                SW   TDCC W  V CD 
Sbjct: 27  SERCNPKDKKVLLQIKKALDNPYILA----------------SWNPNTDCCGWYCVECDL 70

Query: 74  VTGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTY 133
            T  +  L ++S    L G I D   +  L  L++L     + L  Q+ P   +LK L  
Sbjct: 71  TTHRINSLTIFSG--QLSGQIPD--AVGDLPFLETLIFRKLSNLTGQIPPAIAKLKHLKM 126

Query: 134 LNLSASNFGGLVPYEMSHSSKLTHLDLSF 162
           + LS +N  G VP   S    LT+LDLSF
Sbjct: 127 VRLSWTNLSGPVPAFFSELKNLTYLDLSF 155

Inhibitor of fungal polygalacturonase. It is an important factor for plant resistance to phytopathogenic fungi.

Vitis vinifera (taxid: 29760)

>sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/181 (37%), Positives = 90/181 (49%), Gaps = 21/181 (11%)

Query: 11  HFSFKTTHSCPPEQSLALLQFKNNTYVRSANYSFCNEENSSPKTNSWTEGTDCCSWDGVT 70
           H S   T + P  +  ALL  K+         SF  +E+S P   SW   T  CSW GVT
Sbjct: 14  HISHSFTVAKPITELHALLSLKS---------SFTIDEHS-PLLTSWNLSTTFCSWTGVT 63

Query: 71  CDNVTGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKE 130
           CD    +V  LDL  S   L GT+  +S + HL  LQ+L+LA +N +   + P+   L E
Sbjct: 64  CDVSLRHVTSLDL--SGLNLSGTL--SSDVAHLPLLQNLSLA-ANQISGPIPPQISNLYE 118

Query: 131 LTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLAS--NLTKLSLLYLG 188
           L +LNLS + F G  P E+S       ++L    L   + T DL  S  NLT+L  L+LG
Sbjct: 119 LRHLNLSNNVFNGSFPDELSSGL----VNLRVLDLYNNNLTGDLPVSLTNLTQLRHLHLG 174

Query: 189 A 189
            
Sbjct: 175 G 175

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q05091|PGIP_PYRCO Polygalacturonase inhibitor OS=Pyrus communis GN=PGIP PE=1 SV=1

 Score = 60.8 bits (146), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 66/150 (44%), Gaps = 23/150 (15%)

Query: 20  CPPEQSLALLQFKN---NTYVRSANYSFCNEENSSPKTNSWTEGTDCCSWDGVTCDNVTG 76
           C P+    LLQ K    + YV +                SW   TDCC W  VTCD+ T 
Sbjct: 27  CNPDDKKVLLQIKKAFGDPYVLA----------------SWKSDTDCCDWYCVTCDSTTN 70

Query: 77  NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNL 136
            +  L +++    + G I   + +  L +L++L       L   + P   +LK L  L L
Sbjct: 71  RINSLTIFAG--QVSGQIP--ALVGDLPYLETLEFHKQPNLTGPIQPAIAKLKGLKSLRL 126

Query: 137 SASNFGGLVPYEMSHSSKLTHLDLSFCVLT 166
           S +N  G VP  +S    LT LDLSF  LT
Sbjct: 127 SWTNLSGSVPDFLSQLKNLTFLDLSFNNLT 156

Inhibitor of fungal polygalacturonase. It is an important factor for plant resistance to phytopathogenic fungi.

Pyrus communis (taxid: 23211)

>sp|O49545|BAME1_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/183 (36%), Positives = 90/183 (49%), Gaps = 23/183 (12%)

Query: 11  HFSFKTTHSCPPEQSLALLQFKNNTYVRSANYSFCNEENSSPKTNSWTEGTDCCSWDGVT 70
           H S   T S P  +  ALL  K        + +   ++ +SP  +SW   T  C+W GVT
Sbjct: 12  HISHTFTASRPISEFRALLSLK-------TSLTGAGDDKNSP-LSSWKVSTSFCTWIGVT 63

Query: 71  CDNVTGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKE 130
           CD    +V  LDL  S   L GT+  + +  HL  LQ+L+LA  N +   + PE   L  
Sbjct: 64  CDVSRRHVTSLDL--SGLNLSGTLSPDVS--HLRLLQNLSLA-ENLISGPIPPEISSLSG 118

Query: 131 LTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTI--EHRTFDLLAS--NLTKLSLLY 186
           L +LNLS + F G  P E+  SS L +L     VL +   + T DL  S  NLT+L  L+
Sbjct: 119 LRHLNLSNNVFNGSFPDEI--SSGLVNLR----VLDVYNNNLTGDLPVSVTNLTQLRHLH 172

Query: 187 LGA 189
           LG 
Sbjct: 173 LGG 175

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1

 Score = 58.2 bits (139), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 61/130 (46%), Gaps = 26/130 (20%)

Query: 27  ALLQFKNNTYVRSANYSFCNEENSSPKTNSWTEGTDCCSWDGVTCD----NVTG-NVIGL 81
           ALL+FK+              E S     SW +    CSW GV C      VTG ++ GL
Sbjct: 43  ALLEFKSQV-----------SETSRVVLGSWNDSLPLCSWTGVKCGLKHRRVTGVDLGGL 91

Query: 82  DLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNF 141
            L    S  VG         +LS L+SLNLA  NF    +  E G L  L YLN+S + F
Sbjct: 92  KLTGVVSPFVG---------NLSFLRSLNLA-DNFFHGAIPSEVGNLFRLQYLNMSNNLF 141

Query: 142 GGLVPYEMSH 151
           GG++P  +S+
Sbjct: 142 GGVIPVVLSN 151

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8RY65|NIK2_ARATH Protein NSP-INTERACTING KINASE 2 OS=Arabidopsis thaliana GN=NIK2 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/141 (34%), Positives = 81/141 (57%), Gaps = 10/141 (7%)

Query: 60  GTDCCSWDGVTCDNVTGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGS 119
             D CSW+ +TC +  G VI L+  S    L GT+  +S++ +L++LQ++ L  +N++  
Sbjct: 67  AVDPCSWNMITCSD--GFVIRLEAPSQN--LSGTL--SSSIGNLTNLQTV-LLQNNYITG 119

Query: 120 QLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNL 179
            +  E G+L +L  L+LS +NF G +P+ +S+S  L +L ++   LT    T     +N+
Sbjct: 120 NIPHEIGKLMKLKTLDLSTNNFTGQIPFTLSYSKNLQYLRVNNNSLT---GTIPSSLANM 176

Query: 180 TKLSLLYLGATNMSLIKPFSL 200
           T+L+ L L   N+S   P SL
Sbjct: 177 TQLTFLDLSYNNLSGPVPRSL 197

Involved in defense response to geminivirus infection (By similarity). Phosphorylates RPL10A in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q6XAT2|ERL2_ARATH LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 58/105 (55%), Gaps = 5/105 (4%)

Query: 62  DCCSWDGVTCDNVTGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQL 121
           D CSW GV CDNV+ NV+ L+L  S   L G I  +S L  L +LQS++L   N LG Q+
Sbjct: 59  DFCSWRGVFCDNVSLNVVSLNL--SNLNLGGEI--SSALGDLMNLQSIDLQ-GNKLGGQI 113

Query: 122 SPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLT 166
             E G    L Y++ S +   G +P+ +S   +L  L+L    LT
Sbjct: 114 PDEIGNCVSLAYVDFSTNLLFGDIPFSISKLKQLEFLNLKNNQLT 158

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ERL1 and ER.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M5J8|PGIP2_ARATH Polygalacturonase inhibitor 2 OS=Arabidopsis thaliana GN=PGIP2 PE=2 SV=2

 Score = 54.7 bits (130), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/107 (34%), Positives = 49/107 (45%), Gaps = 2/107 (1%)

Query: 56  SWTEGTDCCSWDGVTCDNVTGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSN 115
           SW   TDCCSW  + C + T N     L      + G I     +  L +L SL      
Sbjct: 48  SWDPKTDCCSWYCLECGDATVNHRVTSLIIQDGEISGQIP--PEVGDLPYLTSLIFRKLT 105

Query: 116 FLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSF 162
            L   + P   +LK LT+L LS +N  G VP  +S    L ++DLSF
Sbjct: 106 NLTGHIQPTIAKLKNLTFLRLSWTNLTGPVPEFLSQLKNLEYIDLSF 152

Inhibitor of fungal polygalacturonase. It is an important factor for plant resistance to phytopathogenic fungi.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
359493546	985	PREDICTED: LRR receptor-like serine/thre	0.9	0.182	0.518	4e-40
224118528	999	predicted protein [Populus trichocarpa]	0.87	0.174	0.522	7e-39
224111710	1176	predicted protein [Populus trichocarpa]	0.86	0.146	0.538	5e-38
224105451	1046	predicted protein [Populus trichocarpa]	0.875	0.167	0.513	5e-38
224099469	897	predicted protein [Populus trichocarpa]	0.86	0.191	0.530	5e-38
225455498	980	PREDICTED: receptor-like protein 12-like	0.91	0.185	0.518	1e-37
147793123	951	hypothetical protein VITISV_032542 [Viti	0.91	0.191	0.518	1e-37
224111510	942	predicted protein [Populus trichocarpa]	0.915	0.194	0.513	2e-37
224121004	1042	predicted protein [Populus trichocarpa]	0.89	0.170	0.479	4e-37
225459979	979	PREDICTED: receptor-like protein 12-like	0.895	0.182	0.505	9e-37

>gi|359493546|ref|XP_002267585.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  169 bits (429), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 96/185 (51%), Positives = 123/185 (66%), Gaps = 5/185 (2%)

Query: 16  TTHSCPPEQSLALLQFKNNTYVRSANYSFCNEENSS--PKTNSWTEGTDCCSWDGVTCDN 73
           +T  CP  Q++ALL FK +  + +++  +C+  + +  PKT SW +G+DCCSWDGVTCD 
Sbjct: 30  STKLCPHHQAIALLHFKQSFSIDNSSSWYCDYYDVTFYPKTESWKKGSDCCSWDGVTCDW 89

Query: 74  VTGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTY 133
           VTG+VI LDL  SCSWL GTI  N+TLFHL HLQ LNLA++NF GS +S  FGR   LT+
Sbjct: 90  VTGHVIELDL--SCSWLFGTIHSNTTLFHLPHLQRLNLAFNNFRGSSISAGFGRFSSLTH 147

Query: 134 LNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLT-IEHRTFDLLASNLTKLSLLYLGATNM 192
           LNL  S F G +  E+SH S L  LDLS+ + T      FD L  NLTKL  L+LG  ++
Sbjct: 148 LNLCDSEFSGPISPEISHLSNLVSLDLSWNIDTEFAPHGFDSLVQNLTKLQKLHLGGISI 207

Query: 193 SLIKP 197
           S I P
Sbjct: 208 SSIFP 212

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118528|ref|XP_002317843.1| predicted protein [Populus trichocarpa] gi|222858516|gb|EEE96063.1| predicted protein [Populus trichocarpa]

 Score =  165 bits (418), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 94/180 (52%), Positives = 118/180 (65%), Gaps = 6/180 (3%)

Query: 18  HSCPPEQSLALLQFKNNTYVRSANYSFCNEENSSPKTNSWTEGTDCCSWDGVTCDNVTGN 77
           H C P+QSL+LLQFK +  + S+    C      PKT SW EGTDCCSWDGVTC+  TG 
Sbjct: 35  HFCAPDQSLSLLQFKESFSISSSASGRCQH----PKTESWREGTDCCSWDGVTCELETGQ 90

Query: 78  VIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLS 137
           V  LDL  +CS L GT+  NSTLF L HLQ L+L+ ++F  S +S  FG+   LTYLNL+
Sbjct: 91  VTALDL--ACSMLYGTLHSNSTLFSLHHLQKLDLSDNDFQSSHISSSFGQFSNLTYLNLN 148

Query: 138 ASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKP 197
            S F G VP+E+SH SKL  LDLS   L++E  +FD L  NLT+L  L L + +MSL+ P
Sbjct: 149 YSVFAGQVPWEISHLSKLVSLDLSGDYLSLEPISFDKLVRNLTQLRELDLSSVDMSLVTP 208

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111710|ref|XP_002332892.1| predicted protein [Populus trichocarpa] gi|222833737|gb|EEE72214.1| predicted protein [Populus trichocarpa]

 Score =  162 bits (411), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 98/182 (53%), Positives = 122/182 (67%), Gaps = 10/182 (5%)

Query: 20  CPPEQSLALLQFKNNTYV--RSANYSFCNEENSSPKTNSWTEGTDCCSWDGVTCDNVTGN 77
           CP +QSLALLQFK++  +   S + S C      PK   W EGTDCCSWDGVTC+  TG+
Sbjct: 37  CPGDQSLALLQFKHSFPMTPSSPSTSPC----YLPKKVLWKEGTDCCSWDGVTCNMQTGH 92

Query: 78  VIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLS 137
           VIGLDL   CS L GT+  NSTLF L HLQ L+L+Y++F  S +S  FG+   LT+LNL+
Sbjct: 93  VIGLDL--GCSMLYGTLHSNSTLFSLHHLQKLDLSYNDFNRSVISSSFGQFLHLTHLNLN 150

Query: 138 ASNFGGLVPYEMSHSSKLTHLDLSFC--VLTIEHRTFDLLASNLTKLSLLYLGATNMSLI 195
           +SNF G VP E+SH S+L  LDLS     L +E  +F+ LA NLT+L  LYLG  NMSL+
Sbjct: 151 SSNFAGQVPPEISHLSRLVSLDLSSNSEQLMLEPISFNKLAQNLTQLRELYLGGVNMSLV 210

Query: 196 KP 197
            P
Sbjct: 211 VP 212

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105451|ref|XP_002313815.1| predicted protein [Populus trichocarpa] gi|222850223|gb|EEE87770.1| predicted protein [Populus trichocarpa]

 Score =  162 bits (411), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 94/183 (51%), Positives = 122/183 (66%), Gaps = 8/183 (4%)

Query: 17  THSCPPEQSLALLQFKNNTYVR-SANYSFCNEENSSPKTNSWTEGTDCCSWDGVTCDNVT 75
           T  C  +QS+ LLQFK + ++  SA++  C     +PKT SW EGTDCC WDGVTCD  +
Sbjct: 36  TQLCARDQSIHLLQFKESFFIDPSASFEDC----ENPKTESWKEGTDCCLWDGVTCDIKS 91

Query: 76  GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLN 135
           G VIGLDL  +CS L GT+  NSTLF L HLQ L+L+Y++F  S +S +FG    LT+LN
Sbjct: 92  GQVIGLDL--ACSMLYGTLHSNSTLFSLHHLQKLDLSYNDFNLSHISSQFGHFSSLTHLN 149

Query: 136 LSASNFGGLVPYEMSHSSKLTHLDLSF-CVLTIEHRTFDLLASNLTKLSLLYLGATNMSL 194
           L+ S+F GLVP ++SH SKL  LDLS+   L +E   F+ L  NLTKL  L+L   +MSL
Sbjct: 150 LNYSDFTGLVPSQISHLSKLVSLDLSYNNKLALEPIPFNKLVQNLTKLRELHLSEVDMSL 209

Query: 195 IKP 197
           + P
Sbjct: 210 VVP 212

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099469|ref|XP_002334479.1| predicted protein [Populus trichocarpa] gi|222872406|gb|EEF09537.1| predicted protein [Populus trichocarpa]

 Score =  162 bits (411), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 96/181 (53%), Positives = 123/181 (67%), Gaps = 9/181 (4%)

Query: 20  CPPEQSLALLQFKNNTYVRSANYSF-CNEENSSPKTNSWTEGTDCCSWDGVTCDNVTGNV 78
           CP +QSLALLQFKN+  + S+  +F C+     P+   W EGTDCC+WDGVTC+  TG+V
Sbjct: 37  CPGDQSLALLQFKNSFPMPSSPSTFPCHP----PEKVLWKEGTDCCTWDGVTCNMKTGHV 92

Query: 79  IGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSA 138
           IGLDL   CS L GT+  NSTLF L HLQ L+L+ ++F  S +S  FG+   LT+LNL++
Sbjct: 93  IGLDL--GCSMLYGTLHSNSTLFSLHHLQKLDLSRNDFNRSVISSSFGQFLHLTHLNLNS 150

Query: 139 SNFGGLVPYEMSHSSKLTHLDLSFC--VLTIEHRTFDLLASNLTKLSLLYLGATNMSLIK 196
           SNF G VP E+SH S+L  LDLS     L +E  +F+ LA NLT+L  LYLG  NMSL+ 
Sbjct: 151 SNFAGQVPPEISHLSRLVSLDLSSNSEELMLEPISFNKLAQNLTQLRELYLGGVNMSLVV 210

Query: 197 P 197
           P
Sbjct: 211 P 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455498|ref|XP_002264793.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 97/187 (51%), Positives = 121/187 (64%), Gaps = 5/187 (2%)

Query: 17  THSCPPEQSLALLQFKNNTYVRSANYSFCNEEN--SSPKTNSWTEGTDCCSWDGVTCDNV 74
           T  CP  Q+LALL  K +  + +++   C+     S PKT SW +G+DCCSWDGVTCD V
Sbjct: 29  TKLCPHHQTLALLHLKQSFSINNSSSLDCHAVGVTSYPKTESWKKGSDCCSWDGVTCDWV 88

Query: 75  TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYL 134
           TG+VI LDL  SCSWL GTI  N+TLF L H+Q LNLA++NF GS +S  FGR   LT+L
Sbjct: 89  TGHVIELDL--SCSWLFGTIHSNTTLFLLPHIQRLNLAFNNFSGSSISVGFGRFSSLTHL 146

Query: 135 NLSASNFGGLVPYEMSHSSKLTHLDLSFCVLT-IEHRTFDLLASNLTKLSLLYLGATNMS 193
           NLS S F GL+  E+SH S L  LDLS+   T      F+ L  NLTKL  L+LG  ++S
Sbjct: 147 NLSDSGFSGLISPEISHLSNLVSLDLSWNSDTEFAPHGFNSLVQNLTKLQKLHLGGISIS 206

Query: 194 LIKPFSL 200
            + P SL
Sbjct: 207 SVFPNSL 213

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147793123|emb|CAN75335.1| hypothetical protein VITISV_032542 [Vitis vinifera]

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 97/187 (51%), Positives = 121/187 (64%), Gaps = 5/187 (2%)

Query: 17  THSCPPEQSLALLQFKNNTYVRSANYSFCNEEN--SSPKTNSWTEGTDCCSWDGVTCDNV 74
           T  CP  Q+LALL  K +  + +++   C+     S PKT SW +G+DCCSWDGVTCD V
Sbjct: 30  TKLCPHHQTLALLHLKQSFSINNSSSLDCHAVGVTSYPKTESWKKGSDCCSWDGVTCDWV 89

Query: 75  TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYL 134
           TG+VI LDL  SCSWL GTI  N+TLF L H+Q LNLA++NF GS +S  FGR   LT+L
Sbjct: 90  TGHVIELDL--SCSWLFGTIHSNTTLFLLPHIQRLNLAFNNFSGSSISVGFGRFSSLTHL 147

Query: 135 NLSASNFGGLVPYEMSHSSKLTHLDLSFCVLT-IEHRTFDLLASNLTKLSLLYLGATNMS 193
           NLS S F GL+  E+SH S L  LDLS+   T      F+ L  NLTKL  L+LG  ++S
Sbjct: 148 NLSDSGFSGLISPEISHLSNLVSLDLSWNSDTEFAPHGFNSLVQNLTKLQKLHLGGISIS 207

Query: 194 LIKPFSL 200
            + P SL
Sbjct: 208 SVFPNSL 214

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111510|ref|XP_002332925.1| predicted protein [Populus trichocarpa] gi|222834420|gb|EEE72897.1| predicted protein [Populus trichocarpa]

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 98/191 (51%), Positives = 121/191 (63%), Gaps = 8/191 (4%)

Query: 9   FH-HFSFKTTHSCPPEQSLALLQFKNNTYVRSANYSFCNEENSSPKTNSWTEGTDCCSWD 67
           FH H +  ++H C   QSL+LLQFK +  + S+    C      PKT SW EGTDCC WD
Sbjct: 19  FHFHSTISSSHFCALHQSLSLLQFKESFSINSSASIRCQH----PKTESWKEGTDCCLWD 74

Query: 68  GVTCDNVTGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGR 127
           GVTCD  TG+V GLDL  +CS L GT+  NSTLF L HLQ L+L+ ++F  S +S  FG+
Sbjct: 75  GVTCDMKTGHVTGLDL--ACSMLYGTLHSNSTLFSLHHLQKLDLSDNDFNSSHISSRFGQ 132

Query: 128 LKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLS-FCVLTIEHRTFDLLASNLTKLSLLY 186
              LT LNL+ S F G VP E+SH SKL  LDLS    L++E  +FD L  NLTKL  L 
Sbjct: 133 FSNLTLLNLNFSVFAGQVPSEISHLSKLVSLDLSDNGYLSLEPISFDKLVRNLTKLRELD 192

Query: 187 LGATNMSLIKP 197
           L + NMSL+ P
Sbjct: 193 LSSVNMSLLVP 203

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121004|ref|XP_002318473.1| predicted protein [Populus trichocarpa] gi|222859146|gb|EEE96693.1| predicted protein [Populus trichocarpa]

 Score =  159 bits (403), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 93/194 (47%), Positives = 121/194 (62%), Gaps = 16/194 (8%)

Query: 18  HSCPPEQSLALLQFKNNTYVRSANYSFCN--EENSSPKTNSWTEGTDCCSWDGVTCDNVT 75
           H C   QSL+LLQFK +  ++S+ + F    + +  PKT SW EGTDCC WDGV+CD  T
Sbjct: 42  HLCAHRQSLSLLQFKQSFSIQSSPFWFARNYQYDQYPKTESWKEGTDCCLWDGVSCDLKT 101

Query: 76  GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLN 135
           G+V GLDL  SCS L GT+  N++LF L HLQ L+L++++F  S +S  FG+   LT+LN
Sbjct: 102 GHVTGLDL--SCSMLYGTLLPNNSLFSLHHLQQLDLSFNDFNSSHISSRFGQFSNLTHLN 159

Query: 136 LSASNFGGLVPYEMSHSSKLTHLDL------------SFCVLTIEHRTFDLLASNLTKLS 183
           LS S+  G VP E+SH SK+  LDL            SF  L+ +  +FD LA NLTKL 
Sbjct: 160 LSGSDLAGQVPSEISHLSKMVSLDLSWNYDLVSVEPISFDKLSFDKLSFDKLARNLTKLR 219

Query: 184 LLYLGATNMSLIKP 197
            L L   NMSL+ P
Sbjct: 220 ELDLSGVNMSLVVP 233

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459979|ref|XP_002267546.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  158 bits (400), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 93/184 (50%), Positives = 119/184 (64%), Gaps = 5/184 (2%)

Query: 20  CPPEQSLALLQFKNN-TYVRSANYSFCN--EENSSPKTNSWTEGTDCCSWDGVTCDNVTG 76
           CP  QS ALL  + + + + ++++  C+     S PKT SW +G+DCCSWDGVTCD VTG
Sbjct: 31  CPGHQSRALLHLRKSFSVIDNSSFWGCDYYGVTSYPKTESWKKGSDCCSWDGVTCDRVTG 90

Query: 77  NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNL 136
           +VIGLDL  SCSWL GTI  NSTLF   HL+ LNLA+++F GS +S  FGR   LT+LNL
Sbjct: 91  HVIGLDL--SCSWLYGTIHSNSTLFLFPHLRRLNLAFNDFNGSSVSTRFGRFSSLTHLNL 148

Query: 137 SASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIK 196
           S S F GL+  E+SH + L  LDLS          F+ L  NLTKL  L+LG  ++S + 
Sbjct: 149 SESLFSGLISPEISHLANLVSLDLSGNGAEFAPHGFNSLLLNLTKLQKLHLGGISISSVF 208

Query: 197 PFSL 200
           P SL
Sbjct: 209 PNSL 212

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	200
TAIR|locus:2825762	994	RLP6 "AT1G45616" [Arabidopsis	0.765	0.153	0.456	4.8e-29
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.715	0.151	0.430	9.2e-26
TAIR|locus:2090754	711	RLP43 "receptor like protein 4	0.71	0.199	0.427	9.5e-24
TAIR|locus:2119535	725	RLP48 "receptor like protein 4	0.71	0.195	0.436	7.2e-23
TAIR|locus:2119445	719	AT4G13820 [Arabidopsis thalian	0.69	0.191	0.430	1.9e-22
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.67	0.131	0.433	2.2e-22
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.72	0.146	0.398	4.3e-22
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.71	0.148	0.408	6.7e-22
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.705	0.161	0.424	9.4e-22
TAIR|locus:2129246	891	RLP50 "receptor like protein 5	0.685	0.153	0.426	8.2e-20

TAIR|locus:2825762 RLP6 "AT1G45616" [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 4.8e-29, P = 4.8e-29
 Identities = 74/162 (45%), Positives = 97/162 (59%)

Query:     6 SSPFHHFSFKTTHSCPPEQSLALLQFKNNTYVRSANYSFCN------EENSSPKTNSWTE 59
             SS  + F+  T  SC P+Q  ALL+FKN   +   N  F +      +  S PKT SWT+
Sbjct:    22 SSFCNTFASLTQDSCHPDQRDALLEFKNEFKIWYPN-GFLDIDGVLMDVTSYPKTKSWTK 80

Query:    60 GTDCCSWDGVTCDNVTGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGS 119
              +DCC WDG+TCD  +G V GLDL  SCS L G ++ NS+LF L HLQS+NLAY+NF  S
Sbjct:    81 NSDCCYWDGITCDTKSGKVTGLDL--SCSCLHGRLEPNSSLFRLQHLQSVNLAYNNFTNS 138

Query:   120 QLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLS 161
              +  EF +   L  LNLS S+F G +  ++   + L  LDLS
Sbjct:   139 PIPAEFSKFMRLERLNLSRSSFSGHISIKLLQLTNLVSLDLS 180

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0016020 "membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 9.2e-26, P = 9.2e-26
 Identities = 65/151 (43%), Positives = 89/151 (58%)

Query:    16 TTHSCPPEQSLALLQFKNNTYV-RSANYSFCNEENSS----PKTNSWTEGTDCCSWDGVT 70
             T H C PEQ  ALL+ KN   + + ++  +C   NS     P T SW   +DCC+W+G+T
Sbjct:    34 TRHLCLPEQRDALLELKNEFEIGKPSSNDYCYRNNSRVSPHPTTESWRNNSDCCNWEGIT 93

Query:    71 CDNVTGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKE 130
             CD  +G VI LDL  SCSWL G+   NS+LF L +L+ L+L   N L  ++    G L  
Sbjct:    94 CDTKSGEVIELDL--SCSWLYGSFHSNSSLFRLQNLRVLDLT-QNDLDGEIPSSIGNLSH 150

Query:   131 LTYLNLSASNFGGLVPYEMSHSSKLTHLDLS 161
             LT L+LS + F GL+P  + + S+LT L LS
Sbjct:   151 LTSLHLSYNQFLGLIPSSIENLSRLTSLHLS 181

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2090754 RLP43 "receptor like protein 43" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 9.5e-24, P = 9.5e-24
 Identities = 65/152 (42%), Positives = 92/152 (60%)

Query:    16 TTHSCPPEQSLALLQFKNNTYV-RSANYS--FCNEENSSPKTNSW-TEGTDCCSWDGVTC 71
             T H C PEQ  ALL+FK    + +   Y   +C E +  PKT SW    +DCC+W+GVTC
Sbjct:    33 TRHLCRPEQKDALLKFKTEFEIGKPCRYCTVYCIEPH--PKTESWGNNNSDCCNWEGVTC 90

Query:    72 DNVTGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKEL 131
             +  +G VI LDL  SCS+L G    NS++ +L  L +L+L++++F G Q+      L  L
Sbjct:    91 NAKSGEVIELDL--SCSYLHGRFHSNSSIRNLHFLTTLDLSFNDFKG-QIMSSIENLSHL 147

Query:   132 TYLNLSASNFGGLVPYEMSHSSKLTHLDLSFC 163
             TYL+LS ++F G VP  + + S LT LDL +C
Sbjct:   148 TYLDLSFNHFSGQVPSSIGNLSHLTFLDL-YC 178

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2119535 RLP48 "receptor like protein 48" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 7.2e-23, P = 7.2e-23
 Identities = 65/149 (43%), Positives = 81/149 (54%)

Query:    20 CPPEQSLALLQFKNNTYVRSANYSFCNEENSSPKTNSWTEGTDCCSWDGVTCDNVTGNVI 79
             C P+Q  ALL+FKN  YV+     F         T +W   TDCCSW+ V+CD  TG V+
Sbjct:    34 CLPDQRDALLEFKNEFYVQE----FDPHMKCEKATETWRNKTDCCSWNRVSCDPKTGKVV 89

Query:    80 GLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSAS 139
              LDL SSC  L G +  NS+LF L HLQSL L+ +N  G  L    G LK L  L+    
Sbjct:    90 ELDLMSSC--LNGPLRSNSSLFRLQHLQSLELSSNNISGI-LPDSIGNLKYLRSLSFRTC 146

Query:   140 NFGGLVPYEMSHSSKLTHLDLSFCVLTIE 168
             +  G +P  +   S LTHLDLS+   T E
Sbjct:   147 HLFGKIPSSLGSLSYLTHLDLSYNDFTSE 175

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2119445 AT4G13820 [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 1.9e-22, P = 1.9e-22
 Identities = 62/144 (43%), Positives = 81/144 (56%)

Query:    18 HSCPPEQSLALLQFKNNTYVRSANYSFCNEENSSPKTNSWTEGTDCCSWDGVTCDNVTGN 77
             H C  +Q  ALL+FKN  YV   N    N      KT  W   TDCCSWDG++CD  TG 
Sbjct:    27 HLCRQDQKNALLEFKNEFYVHEFN---SNGIVGVKKTEKWRNNTDCCSWDGISCDPKTGK 83

Query:    78 VIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLS 137
             V+ LDL +S  +L G +  +S+LF L HL +L+L  +NF G  L    G LK L  L+L 
Sbjct:    84 VVELDLMNS--FLNGPLRYDSSLFRLQHLHNLDLGSNNFSGI-LPDSIGSLKYLRVLSLG 140

Query:   138 ASNFGGLVPYEMSHSSKLTHLDLS 161
               N  G +P  + + + LT+LDLS
Sbjct:   141 DCNLFGKIPSSLGNLTYLTNLDLS 164

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000303 "response to superoxide" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 2.2e-22, P = 2.2e-22
 Identities = 65/150 (43%), Positives = 82/150 (54%)

Query:    12 FSFKTTHSCPPEQSLALLQFKNNTYVRSANYSFCNEENSSPKTNSWTEGTDCCSWDGVTC 71
             F   T H C  +Q  ALL FKN              E     + SW   +DCCSWDG+TC
Sbjct:    66 FVSATQHLCHSDQKDALLDFKN--------------EFGMVDSKSWVNKSDCCSWDGITC 111

Query:    72 DNVTGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKEL 131
             D  +GNVIGLDL  S  +L G +  NS+LF L HL+ LNLA +NF  S +  EF +L  L
Sbjct:   112 DAKSGNVIGLDL--SSIFLYGQLKSNSSLFKLRHLRDLNLANNNFNNSPIPAEFDKLTGL 169

Query:   132 TYLNLSASNFGGLVPYEMSHSSKLTHLDLS 161
               L+LS S+  G +P  +   +KL  LDLS
Sbjct:   170 ERLDLSQSSLSGQIPINLLQLTKLVSLDLS 199

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 61/153 (39%), Positives = 88/153 (57%)

Query:    12 FSFKTTHSCPPEQSLALLQFKNNTYVRSANYSFCNEENSSPKTNSWTEGTDCCSWDGVTC 71
             F+  T H C P+QS A+L+FKN       +   C + N   KT SWT  +DCC WDG+ C
Sbjct:    22 FAASTRHLCDPDQSDAILEFKNEFETLEES---CFDSNIPLKTESWTNNSDCCYWDGIKC 78

Query:    72 DNVTGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQ---SLNLAYSNFLGSQLSPEFGRL 128
             D   G+VI LDL  SC  L G ++ NS+LF L  L+   +L+L+ ++F+G Q+      L
Sbjct:    79 DAKFGDVIELDLSFSC--LRGQLNSNSSLFRLPQLRFLTTLDLSNNDFIG-QIPSSLETL 135

Query:   129 KELTYLNLSASNFGGLVPYEMSHSSKLTHLDLS 161
               LT L+LS ++F G +P  + + S L  +D S
Sbjct:   136 SNLTTLDLSRNHFSGRIPSSIGNLSHLIFVDFS 168

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 6.7e-22, P = 6.7e-22
 Identities = 60/147 (40%), Positives = 90/147 (61%)

Query:    16 TTHSCPPEQSLALLQFKNNTYVRSANYSFCNEEN-SSP-KTNSWTEGTDCCSWDGVTCDN 73
             T + C PEQ  ALL FKN   +   +   C      SP KT+SW   +DCC+W+GVTC+ 
Sbjct:    33 TRNLCRPEQRDALLAFKNEFEIGKPSPDHCKIYGIESPRKTDSWGNNSDCCNWEGVTCNA 92

Query:    74 VTGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTY 133
              +G VI LDL  SCS L G    NS++ +L  L +L+L++++F G Q++     L  LTY
Sbjct:    93 KSGEVIELDL--SCSSLHGRFHSNSSIRNLHFLTTLDLSFNDFKG-QITSSIENLSHLTY 149

Query:   134 LNLSASNFGGLVPYEMSHSSKLTHLDL 160
             L+LS+++F G +   + + S+LT+L+L
Sbjct:   150 LDLSSNHFSGQILNSIGNLSRLTYLNL 176

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 9.4e-22, P = 9.4e-22
 Identities = 65/153 (42%), Positives = 83/153 (54%)

Query:    12 FSFKTTHSCPPEQSLALLQFKNNTYVRSANYSFCNEENSSP-KTNSWTEGTDCCSWDGVT 70
             F+    H C  EQ  ALL+FKN   ++   +  C     SP KT SW  G+DCC WDG+T
Sbjct:    22 FAVPNIHLCHFEQRDALLEFKNEFKIKKPCFG-C----PSPLKTKSWENGSDCCHWDGIT 76

Query:    71 CDNVTGNVIGLDLYSSCSWLVGTIDDNSTLFHLSH---LQSLNLAYSNFLGSQLSPEFGR 127
             CD  TG VI +DL  SC  L G    NS L  L +   L +L+L+Y N L  Q+S   G 
Sbjct:    77 CDAKTGEVIEIDLMCSC--LHGWFHSNSNLSMLQNFHFLTTLDLSY-NHLSGQISSSIGN 133

Query:   128 LKELTYLNLSASNFGGLVPYEMSHSSKLTHLDL 160
             L  LT L+LS +NF G +P  + +   LT L L
Sbjct:   134 LSHLTTLDLSGNNFSGWIPSSLGNLFHLTSLHL 166

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2129246 RLP50 "receptor like protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 8.2e-20, P = 8.2e-20
 Identities = 61/143 (42%), Positives = 78/143 (54%)

Query:    20 CPPEQSLALLQFKNNTYVRSANYSFCNEENSSPKTNSWTEGTDCCSWDGVTCDNVTGNVI 79
             C P+Q  ALL+FKN   + S +        ++ K   W   TDCCSW G++CD  TG V+
Sbjct:    26 CLPDQRDALLEFKNEFSIPSPDSDLMLILQTTAK---WRNNTDCCSWGGISCDPKTGVVV 82

Query:    80 GLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSAS 139
              LDL +S   L G +  NS+LF L HLQSL+L+Y N L   L    G  K L  LNL   
Sbjct:    83 ELDLGNSD--LNGRLRSNSSLFRLQHLQSLDLSY-NDLSCTLPDSSGNFKYLRVLNLLGC 139

Query:   140 NFGGLVPYEMSHSSKLTHLDLSF 162
             N  G +P  +   S LT LDLS+
Sbjct:   140 NLFGEIPTSLRSLSYLTDLDLSY 162

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	200
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-05
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.003
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 51.8 bits (124), Expect = 5e-08
 Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 7/111 (6%)

Query: 56  SWTEGTDCCSWDGVTCDNVTGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSN 115
           +W    D C W G+TC+N +  V+ +DL  S   + G I  +S +F L ++Q++NL+ + 
Sbjct: 50  NWNSSADVCLWQGITCNNSS-RVVSIDL--SGKNISGKI--SSAIFRLPYIQTINLSNNQ 104

Query: 116 FLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLT 166
             G      F     L YLNLS +NF G +P        L  LDLS  +L+
Sbjct: 105 LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP--RGSIPNLETLDLSNNMLS 153

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 46.0 bits (109), Expect = 5e-06
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 9/99 (9%)

Query: 66  WDGVTC--DNVTGN--VIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQL 121
           W G  C  D+  G   + GL L +    L G I ++ +     HLQS+NL+  N +   +
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQ--GLRGFIPNDISKLR--HLQSINLS-GNSIRGNI 458

Query: 122 SPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDL 160
            P  G +  L  L+LS ++F G +P  +   + L  L+L
Sbjct: 459 PPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 6/98 (6%)

Query: 90  LVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEM 149
           LVG I   ++L +L+ L+ L LA SN L  Q+  E G++K L ++ L  +N  G +PYE+
Sbjct: 176 LVGKIP--NSLTNLTSLEFLTLA-SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI 232

Query: 150 SHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYL 187
              + L HLDL +  LT           NL  L  L+L
Sbjct: 233 GGLTSLNHLDLVYNNLTGP---IPSSLGNLKNLQYLFL 267

Length = 968

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 37.3 bits (87), Expect = 2e-04
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 12/53 (22%)

Query: 21 PPEQSLALLQFKNNTYVRSANYSFCNEENSSPKTNSWTE-GTDCCSWDGVTCD 72
            +   ALL FK++              + S   +SW    +D CSW GVTCD
Sbjct: 1  LNDDRDALLAFKSSL-----------NGDPSGALSSWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.001
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 105 HLQSLNLAYSNFLGSQLSPE-FGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFC 163
           +L+SL+L+ +      +    F  L  L  L+LS +N   + P   S    L  LDLS  
Sbjct: 1   NLKSLDLSNNRLTV--IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Query: 164 VL 165
            L
Sbjct: 59  NL 60

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 97  NSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT 156
           NS  + +  LQ L+LA + F G    P+    K L  L+LS + F G VP ++   S+L 
Sbjct: 445 NSRKWDMPSLQMLSLARNKFFGGL--PDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELM 502

Query: 157 HLDLS 161
            L LS
Sbjct: 503 QLKLS 507

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 37.5 bits (87), Expect = 0.003
 Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 103 LSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSF 162
           L+ L  L+L Y+N  G  +    G LK L YL L  +   G +P  +    KL  LDLS 
Sbjct: 235 LTSLNHLDLVYNNLTG-PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSD 293

Query: 163 CVLTIEHRTFDLLASNLTKLSLLYLGATNMS 193
             L+ E      L   L  L +L+L + N +
Sbjct: 294 NSLSGE---IPELVIQLQNLEILHLFSNNFT 321

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	200
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.86
PLN03150	623	hypothetical protein; Provisional	99.79
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.57
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.42
PLN03150	623	hypothetical protein; Provisional	99.4
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.28
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.08
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.08
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.07
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.99
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.94
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.92
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.88
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.86
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.86
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.81
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.8
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.79
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.79
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.78
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.78
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.68
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.68
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.67
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.65
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.6
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.6
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.59
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.58
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.54
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.5
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.43
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.4
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.38
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.33
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.31
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.24
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.21
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.15
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.12
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.1
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.93
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.85
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.81
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.81
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.78
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.73
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.71
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.55
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.37
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.25
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.17
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.14
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.13
PRK15386	426	type III secretion protein GogB; Provisional	97.04
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.93
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.7
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.38
PRK15386	426	type III secretion protein GogB; Provisional	96.25
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.17
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.01
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.57
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.29
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.04
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.52
KOG0473	326	consensus Leucine-rich repeat protein [Function un	94.38
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	94.16
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.96
smart00370	26	LRR Leucine-rich repeats, outliers.	93.86
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.86
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	93.75
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	93.37
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.32
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	90.19
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	86.17
KOG1947	482	consensus Leucine rich repeat proteins, some prote	83.51
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	83.22
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	83.2

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.86  E-value=2.5e-21  Score=181.22  Aligned_cols=157  Identities=31%  Similarity=0.503  Sum_probs=114.6

Q ss_pred             CHHHHHHHHHHHHhcCCCCCCcccCcCCCCCCCCCCCCCCCCCccccceEecCCCCcEEEEEcccCCCCCeeccCCCccc
Q 037769           21 PPEQSLALLQFKNNTYVRSANYSFCNEENSSPKTNSWTEGTDCCSWDGVTCDNVTGNVIGLDLYSSCSWLVGTIDDNSTL  100 (200)
Q Consensus        21 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~c~w~gv~c~~~~~~l~~L~L~~~~n~l~~~~p~~~~l  100 (200)
                      .++|+.+|++||..+.++ .           ..+.+|+...++|.|.||+|++. ++|+.|++  ++|.+.+.++.  .+
T Consensus        27 ~~~~~~~l~~~~~~~~~~-~-----------~~~~~w~~~~~~c~w~gv~c~~~-~~v~~L~L--~~~~i~~~~~~--~~   89 (968)
T PLN00113         27 HAEELELLLSFKSSINDP-L-----------KYLSNWNSSADVCLWQGITCNNS-SRVVSIDL--SGKNISGKISS--AI   89 (968)
T ss_pred             CHHHHHHHHHHHHhCCCC-c-----------ccCCCCCCCCCCCcCcceecCCC-CcEEEEEe--cCCCccccCCh--HH
Confidence            568899999999998654 2           25688987789999999999864 68999999  99999988888  78


Q ss_pred             cCCCCCcEEEccCCCCCCCCCChhcc-CCCCCCEEeccCCcCCCCC----------------------cccccCCCCCCE
Q 037769          101 FHLSHLQSLNLAYSNFLGSQLSPEFG-RLKELTYLNLSASNFGGLV----------------------PYEMSHSSKLTH  157 (200)
Q Consensus       101 ~~l~~L~~L~L~~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~----------------------P~~l~~l~~L~~  157 (200)
                      ..+++|+.|+|++|.+.+. +|..+. .+++|++|+|++|.+++.+                      |..++.+++|++
T Consensus        90 ~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~  168 (968)
T PLN00113         90 FRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKV  168 (968)
T ss_pred             hCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCE
Confidence            8899999999999998876 776654 6666777766666665544                      444555555555


Q ss_pred             EeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCC
Q 037769          158 LDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPF  198 (200)
Q Consensus       158 L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~  198 (200)
                      |+|++|.+   .+.+|..++++++|++|+|++|.+.+.+|.
T Consensus       169 L~L~~n~l---~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~  206 (968)
T PLN00113        169 LDLGGNVL---VGKIPNSLTNLTSLEFLTLASNQLVGQIPR  206 (968)
T ss_pred             EECccCcc---cccCChhhhhCcCCCeeeccCCCCcCcCCh
Confidence            55555555   234555566666666666666666655554

>PLN03150 hypothetical protein; Provisional

Probab=99.79  E-value=1.5e-18  Score=155.60  Aligned_cols=157  Identities=24%  Similarity=0.340  Sum_probs=133.2

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCCCCCcccCcCCCCCCCCCCCCCCCCCc-----cccceEecCC--C--CcEEEEEcccCC
Q 037769           17 THSCPPEQSLALLQFKNNTYVRSANYSFCNEENSSPKTNSWTEGTDCC-----SWDGVTCDNV--T--GNVIGLDLYSSC   87 (200)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~c-----~w~gv~c~~~--~--~~l~~L~L~~~~   87 (200)
                      ...+.++|+.||+++|..+..+              ...+|..  ++|     .|.||.|...  .  ..|+.|+|  ++
T Consensus       366 ~~~t~~~~~~aL~~~k~~~~~~--------------~~~~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L--~~  427 (623)
T PLN03150        366 ESKTLLEEVSALQTLKSSLGLP--------------LRFGWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGL--DN  427 (623)
T ss_pred             ccccCchHHHHHHHHHHhcCCc--------------ccCCCCC--CCCCCcccccccceeeccCCCCceEEEEEEC--CC
Confidence            3456778999999999988643              1236853  344     7999999532  1  25899999  99


Q ss_pred             CCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCC
Q 037769           88 SWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTI  167 (200)
Q Consensus        88 n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~  167 (200)
                      |.+.|.+|.  .+..+++|+.|+|++|.+.+. +|..+..+++|+.|+|++|.++|.+|..++.+++|+.|+|++|+++ 
T Consensus       428 n~L~g~ip~--~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~-  503 (623)
T PLN03150        428 QGLRGFIPN--DISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS-  503 (623)
T ss_pred             CCccccCCH--HHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCccc-
Confidence            999999999  899999999999999999998 9999999999999999999999999999999999999999999994 


Q ss_pred             CCCchhhhhcCC-CCCCEEecccccCCcCCC
Q 037769          168 EHRTFDLLASNL-TKLSLLYLGATNMSLIKP  197 (200)
Q Consensus       168 ~~~~lp~~l~~l-~~L~~L~Ls~N~l~g~iP  197 (200)
                        +.+|..++.+ .++..+++.+|.....+|
T Consensus       504 --g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        504 --GRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             --ccCChHHhhccccCceEEecCCccccCCC
Confidence              6788888764 477889999998655455

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.57  E-value=5.9e-15  Score=138.44  Aligned_cols=115  Identities=26%  Similarity=0.325  Sum_probs=105.6

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .+++.|++  ++|.+.+.+|.  .+.+++.|+.|++++|.+.+. +|..+..+++|++|+|++|.+++.+|..+..+++|
T Consensus       475 ~~L~~L~l--s~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  549 (968)
T PLN00113        475 KRLENLDL--SRNQFSGAVPR--KLGSLSELMQLKLSENKLSGE-IPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVL  549 (968)
T ss_pred             ccceEEEC--cCCccCCccCh--hhhhhhccCEEECcCCcceee-CChHHcCccCCCEEECCCCcccccCChhHhCcccC
Confidence            46888999  99999888888  888999999999999999988 89999999999999999999999999999999999


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCC
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPF  198 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~  198 (200)
                      +.|+|++|++   .+.+|..+.+++.|+.|++++|++.|.||.
T Consensus       550 ~~L~Ls~N~l---~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~  589 (968)
T PLN00113        550 SQLDLSQNQL---SGEIPKNLGNVESLVQVNISHNHLHGSLPS  589 (968)
T ss_pred             CEEECCCCcc---cccCChhHhcCcccCEEeccCCcceeeCCC
Confidence            9999999999   467899999999999999999999999986

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.42  E-value=4.4e-15  Score=111.25  Aligned_cols=114  Identities=24%  Similarity=0.333  Sum_probs=92.2

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .+++.|.|  ++|.++ .+|+  .+..+.+|+.|++.+|++..  +|..+..+++|+.|+++.|++. .+|..|+.++.|
T Consensus        33 s~ITrLtL--SHNKl~-~vpp--nia~l~nlevln~~nnqie~--lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l  104 (264)
T KOG0617|consen   33 SNITRLTL--SHNKLT-VVPP--NIAELKNLEVLNLSNNQIEE--LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL  104 (264)
T ss_pred             hhhhhhhc--ccCcee-ecCC--cHHHhhhhhhhhcccchhhh--cChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence            57889999  999988 6676  69999999999999999986  8999999999999999999998 789999999999


Q ss_pred             CEEeccCCcCCCC---------------------CCchhhhhcCCCCCCEEecccccCCcCCCC
Q 037769          156 THLDLSFCVLTIE---------------------HRTFDLLASNLTKLSLLYLGATNMSLIKPF  198 (200)
Q Consensus       156 ~~L~Ls~N~l~~~---------------------~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~  198 (200)
                      +.|||.+|+++-.                     ...+|..++++++|+.|.+.+|.+- .+|.
T Consensus       105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpk  167 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPK  167 (264)
T ss_pred             hhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcH
Confidence            9999999887410                     0135666777777777777777655 3554

>PLN03150 hypothetical protein; Provisional

Probab=99.40  E-value=4.8e-13  Score=120.28  Aligned_cols=91  Identities=24%  Similarity=0.385  Sum_probs=86.3

Q ss_pred             CCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCE
Q 037769          105 HLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSL  184 (200)
Q Consensus       105 ~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~  184 (200)
                      .++.|+|++|.+.+. +|..+..+++|+.|+|++|.+.|.+|..++.+++|+.|+|++|+++   +.+|..++++++|++
T Consensus       419 ~v~~L~L~~n~L~g~-ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~ls---g~iP~~l~~L~~L~~  494 (623)
T PLN03150        419 FIDGLGLDNQGLRGF-IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN---GSIPESLGQLTSLRI  494 (623)
T ss_pred             EEEEEECCCCCcccc-CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCC---CCCchHHhcCCCCCE
Confidence            478899999999998 9999999999999999999999999999999999999999999994   678999999999999


Q ss_pred             EecccccCCcCCCCC
Q 037769          185 LYLGATNMSLIKPFS  199 (200)
Q Consensus       185 L~Ls~N~l~g~iP~~  199 (200)
                      |+|++|+++|.+|..
T Consensus       495 L~Ls~N~l~g~iP~~  509 (623)
T PLN03150        495 LNLNGNSLSGRVPAA  509 (623)
T ss_pred             EECcCCcccccCChH
Confidence            999999999999975

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.28  E-value=7.9e-14  Score=104.54  Aligned_cols=113  Identities=21%  Similarity=0.295  Sum_probs=80.1

Q ss_pred             cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCC
Q 037769           77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT  156 (200)
Q Consensus        77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~  156 (200)
                      +++.|++  .-|.+. .+|.  .|+.++.|++|||.+|++....+|..|..++.|+-|.|+.|.|. .+|..++.+++|+
T Consensus        80 klr~lnv--gmnrl~-~lpr--gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lq  153 (264)
T KOG0617|consen   80 KLRILNV--GMNRLN-ILPR--GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQ  153 (264)
T ss_pred             hhhheec--chhhhh-cCcc--ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhccee
Confidence            4444444  444444 3444  45556666666666665554445555555666666666666666 6788899999999


Q ss_pred             EEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCCCC
Q 037769          157 HLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL  200 (200)
Q Consensus       157 ~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~~~  200 (200)
                      .|.+..|.+    -++|.+++.+++|+.|++.+|.++ .+|+++
T Consensus       154 il~lrdndl----l~lpkeig~lt~lrelhiqgnrl~-vlppel  192 (264)
T KOG0617|consen  154 ILSLRDNDL----LSLPKEIGDLTRLRELHIQGNRLT-VLPPEL  192 (264)
T ss_pred             EEeeccCch----hhCcHHHHHHHHHHHHhcccceee-ecChhh
Confidence            999999998    478999999999999999999998 577753

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.08  E-value=8.2e-12  Score=108.41  Aligned_cols=85  Identities=24%  Similarity=0.279  Sum_probs=64.0

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .+++.|+|  +.|++...-..  .+.++++|+.|++++|.|... .++.+...++|+.|+|++|+++..-+..|..|..|
T Consensus       269 ~kme~l~L--~~N~l~~vn~g--~lfgLt~L~~L~lS~NaI~ri-h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L  343 (873)
T KOG4194|consen  269 EKMEHLNL--ETNRLQAVNEG--WLFGLTSLEQLDLSYNAIQRI-HIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL  343 (873)
T ss_pred             cccceeec--ccchhhhhhcc--cccccchhhhhccchhhhhee-ecchhhhcccceeEeccccccccCChhHHHHHHHh
Confidence            46788888  88888755555  678888889999999988887 77888888888888888888885444456555566


Q ss_pred             CEEeccCCcC
Q 037769          156 THLDLSFCVL  165 (200)
Q Consensus       156 ~~L~Ls~N~l  165 (200)
                      +.|+|+.|.+
T Consensus       344 e~LnLs~Nsi  353 (873)
T KOG4194|consen  344 EELNLSHNSI  353 (873)
T ss_pred             hhhcccccch
Confidence            6666655555

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.08  E-value=1.1e-10  Score=88.79  Aligned_cols=107  Identities=23%  Similarity=0.243  Sum_probs=41.3

Q ss_pred             CcEEEEEcccCCCCCeeccCCCcccc-CCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccc-cCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLF-HLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEM-SHSS  153 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~-~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l-~~l~  153 (200)
                      .+++.|+|  ++|.|. .+..   +. .+.+|+.|++++|.++.  ++ .+..+++|+.|++++|.++ .+...+ ..++
T Consensus        19 ~~~~~L~L--~~n~I~-~Ie~---L~~~l~~L~~L~Ls~N~I~~--l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp   88 (175)
T PF14580_consen   19 VKLRELNL--RGNQIS-TIEN---LGATLDKLEVLDLSNNQITK--LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLP   88 (175)
T ss_dssp             --------------------S-----TT-TT--EEE-TTS--S----T-T----TT--EEE--SS----S-CHHHHHH-T
T ss_pred             cccccccc--cccccc-cccc---hhhhhcCCCEEECCCCCCcc--cc-CccChhhhhhcccCCCCCC-ccccchHHhCC
Confidence            36788999  998887 3433   54 57889999999999986  43 5778899999999999998 454444 4688


Q ss_pred             CCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769          154 KLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL  194 (200)
Q Consensus       154 ~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g  194 (200)
                      +|+.|++++|++... ..+ ..++.+++|++|+|.+|++..
T Consensus        89 ~L~~L~L~~N~I~~l-~~l-~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   89 NLQELYLSNNKISDL-NEL-EPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             T--EEE-TTS---SC-CCC-GGGGG-TT--EEE-TT-GGGG
T ss_pred             cCCEEECcCCcCCCh-HHh-HHHHcCCCcceeeccCCcccc
Confidence            999999999998642 222 456788999999999998863

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.07  E-value=2.9e-11  Score=100.97  Aligned_cols=93  Identities=29%  Similarity=0.344  Sum_probs=65.3

Q ss_pred             ccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCC-----------------------cCCCCCcccc
Q 037769           93 TIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSAS-----------------------NFGGLVPYEM  149 (200)
Q Consensus        93 ~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n-----------------------~l~~~~P~~l  149 (200)
                      .+|.  .+..++.|..|+|++|.+..  +|..++.+..||.|+++.|                       ++...-|..+
T Consensus       426 fv~~--~l~~l~kLt~L~L~NN~Ln~--LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l  501 (565)
T KOG0472|consen  426 FVPL--ELSQLQKLTFLDLSNNLLND--LPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGL  501 (565)
T ss_pred             cchH--HHHhhhcceeeecccchhhh--cchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHh
Confidence            4444  45555555555555555543  4555555555555555554                       4442333448


Q ss_pred             cCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCC
Q 037769          150 SHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMS  193 (200)
Q Consensus       150 ~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~  193 (200)
                      .+|.+|.+|||.+|.+    ..+|+.+++|++|++|.+.+|+|.
T Consensus       502 ~nm~nL~tLDL~nNdl----q~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  502 KNMRNLTTLDLQNNDL----QQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhhhhcceeccCCCch----hhCChhhccccceeEEEecCCccC
Confidence            8899999999999999    579999999999999999999998

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.99  E-value=4.4e-11  Score=103.97  Aligned_cols=113  Identities=24%  Similarity=0.261  Sum_probs=88.8

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcc---cccCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPY---EMSHS  152 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~---~l~~l  152 (200)
                      .++..|+|  ++|.|+..-+.  +|..+..|++|+|+.|.+... .-..|..+++|+.|||++|.+++.+-+   .+.+|
T Consensus       317 qkL~~LdL--s~N~i~~l~~~--sf~~L~~Le~LnLs~Nsi~~l-~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl  391 (873)
T KOG4194|consen  317 QKLKELDL--SSNRITRLDEG--SFRVLSQLEELNLSHNSIDHL-AEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGL  391 (873)
T ss_pred             ccceeEec--cccccccCChh--HHHHHHHhhhhcccccchHHH-HhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccc
Confidence            57888888  88888855555  788888888888888888764 445677888999999999998876654   47788


Q ss_pred             CCCCEEeccCCcCCCCCCchh-hhhcCCCCCCEEecccccCCcCCC
Q 037769          153 SKLTHLDLSFCVLTIEHRTFD-LLASNLTKLSLLYLGATNMSLIKP  197 (200)
Q Consensus       153 ~~L~~L~Ls~N~l~~~~~~lp-~~l~~l~~L~~L~Ls~N~l~g~iP  197 (200)
                      ++|+.|+|.+|++    ..+| ..|..+..|++|+|.+|.|-..-|
T Consensus       392 ~~LrkL~l~gNql----k~I~krAfsgl~~LE~LdL~~NaiaSIq~  433 (873)
T KOG4194|consen  392 PSLRKLRLTGNQL----KSIPKRAFSGLEALEHLDLGDNAIASIQP  433 (873)
T ss_pred             hhhhheeecCcee----eecchhhhccCcccceecCCCCcceeecc
Confidence            9999999999998    3455 468899999999999998864333

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.94  E-value=2.9e-11  Score=106.00  Aligned_cols=107  Identities=25%  Similarity=0.311  Sum_probs=62.4

Q ss_pred             cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCC
Q 037769           77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT  156 (200)
Q Consensus        77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~  156 (200)
                      ++..+|+  +.|++. .+|+  .+.++.+|+.|+|++|.|+.  +....+...+|++|++++|+++ .+|+.+..+++|+
T Consensus       223 NL~dvDl--S~N~Lp-~vPe--cly~l~~LrrLNLS~N~ite--L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~  294 (1255)
T KOG0444|consen  223 NLRDVDL--SENNLP-IVPE--CLYKLRNLRRLNLSGNKITE--LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLT  294 (1255)
T ss_pred             hhhhccc--cccCCC-cchH--HHhhhhhhheeccCcCceee--eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHH
Confidence            4555566  666665 4555  56666666666666666654  3444455556666666666666 5666666666666


Q ss_pred             EEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCC
Q 037769          157 HLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMS  193 (200)
Q Consensus       157 ~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~  193 (200)
                      .|.+.+|+++  ...+|..+++|.+|+++..++|.+.
T Consensus       295 kLy~n~NkL~--FeGiPSGIGKL~~Levf~aanN~LE  329 (1255)
T KOG0444|consen  295 KLYANNNKLT--FEGIPSGIGKLIQLEVFHAANNKLE  329 (1255)
T ss_pred             HHHhccCccc--ccCCccchhhhhhhHHHHhhccccc
Confidence            6666666654  2345555555555555555555544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.92  E-value=4.4e-11  Score=99.92  Aligned_cols=110  Identities=26%  Similarity=0.307  Sum_probs=64.0

Q ss_pred             EEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCC--------------
Q 037769           78 VIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGG--------------  143 (200)
Q Consensus        78 l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~--------------  143 (200)
                      +..+++  .+|.+.. +|+  ....++.|++||...|.+..  +|+.++.+.+|+.|+|.+|.+..              
T Consensus       162 l~~l~~--~~n~l~~-l~~--~~i~m~~L~~ld~~~N~L~t--lP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh  234 (565)
T KOG0472|consen  162 LSKLDL--EGNKLKA-LPE--NHIAMKRLKHLDCNSNLLET--LPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELH  234 (565)
T ss_pred             HHHhhc--cccchhh-CCH--HHHHHHHHHhcccchhhhhc--CChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHH
Confidence            344555  5555552 222  23335555555555555443  45555555555555555444431              


Q ss_pred             -------CCccccc-CCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCCC
Q 037769          144 -------LVPYEMS-HSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFS  199 (200)
Q Consensus       144 -------~~P~~l~-~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~~  199 (200)
                             .+|.++. .+.++.+|||.+|++    .++|+++..+++|.+||+++|.|++ +|.+
T Consensus       235 ~g~N~i~~lpae~~~~L~~l~vLDLRdNkl----ke~Pde~clLrsL~rLDlSNN~is~-Lp~s  293 (565)
T KOG0472|consen  235 VGENQIEMLPAEHLKHLNSLLVLDLRDNKL----KEVPDEICLLRSLERLDLSNNDISS-LPYS  293 (565)
T ss_pred             hcccHHHhhHHHHhcccccceeeecccccc----ccCchHHHHhhhhhhhcccCCcccc-CCcc
Confidence                   3343333 567777888888888    4678888888888888888888885 5544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.88  E-value=9.8e-10  Score=69.08  Aligned_cols=59  Identities=34%  Similarity=0.320  Sum_probs=27.7

Q ss_pred             CCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEeccccc
Q 037769          130 ELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATN  191 (200)
Q Consensus       130 ~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~  191 (200)
                      +|++|++++|+++...+..|.++++|++|++++|.++   ..-|..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~---~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT---SIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSES---EEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC---ccCHHHHcCCCCCCEEeCcCCc
Confidence            3445555555554222234445555555555555552   1112344555555555555554

...

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.86  E-value=3.2e-10  Score=102.79  Aligned_cols=105  Identities=25%  Similarity=0.279  Sum_probs=84.6

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .+++.|+|  ++|.+. .+|+. .+.++..|++|+|++|.++.  +|..+..+..|++|...+|.+. .+| .+..++.|
T Consensus       383 ~hLKVLhL--syNrL~-~fpas-~~~kle~LeeL~LSGNkL~~--Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL  454 (1081)
T KOG0618|consen  383 KHLKVLHL--SYNRLN-SFPAS-KLRKLEELEELNLSGNKLTT--LPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQL  454 (1081)
T ss_pred             cceeeeee--cccccc-cCCHH-HHhchHHhHHHhcccchhhh--hhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcc
Confidence            57889999  999887 45542 67888899999999999986  7888888999999999888888 678 78889999


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEeccccc
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATN  191 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~  191 (200)
                      +.+|++.|+++  ...+|..... ++|++|||++|.
T Consensus       455 ~~lDlS~N~L~--~~~l~~~~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  455 KVLDLSCNNLS--EVTLPEALPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             eEEecccchhh--hhhhhhhCCC-cccceeeccCCc
Confidence            99999999885  3344544333 789999999985

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.86  E-value=1.2e-09  Score=68.70  Aligned_cols=61  Identities=31%  Similarity=0.396  Sum_probs=53.9

Q ss_pred             CCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcC
Q 037769          104 SHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVL  165 (200)
Q Consensus       104 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l  165 (200)
                      ++|++|++++|.++.. .+..|..+++|++|++++|.+....|..|.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i-~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEI-PPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEE-CTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCcc-CHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4789999999999974 446789999999999999999966666899999999999999975

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.81  E-value=5.5e-09  Score=79.49  Aligned_cols=104  Identities=23%  Similarity=0.210  Sum_probs=51.8

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhc-cCCCCCCEEeccCCcCCCC-CcccccCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEF-GRLKELTYLNLSASNFGGL-VPYEMSHSS  153 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l-~~l~~L~~L~Ls~n~l~~~-~P~~l~~l~  153 (200)
                      .+++.|++  ++|.|. .+..   +..++.|+.|++++|.++.  +...+ ..+++|+.|++++|++... --..+..++
T Consensus        42 ~~L~~L~L--s~N~I~-~l~~---l~~L~~L~~L~L~~N~I~~--i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~  113 (175)
T PF14580_consen   42 DKLEVLDL--SNNQIT-KLEG---LPGLPRLKTLDLSNNRISS--ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLP  113 (175)
T ss_dssp             TT--EEE---TTS--S---TT-------TT--EEE--SS---S---CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-T
T ss_pred             cCCCEEEC--CCCCCc-cccC---ccChhhhhhcccCCCCCCc--cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCC
Confidence            47899999  999998 4544   7889999999999999987  55555 4689999999999999742 113567889


Q ss_pred             CCCEEeccCCcCCCCCCchhhhhcCCCCCCEEec
Q 037769          154 KLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYL  187 (200)
Q Consensus       154 ~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~L  187 (200)
                      +|+.|+|.+|.++....--...+..+++|+.||-
T Consensus       114 ~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen  114 KLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             T--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            9999999999995321112335778999999884

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.80  E-value=8.5e-09  Score=60.23  Aligned_cols=40  Identities=40%  Similarity=0.761  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHhcCCCCCCcccCcCCCCCCCCCCCCCC--CCCccccceEec
Q 037769           22 PEQSLALLQFKNNTYVRSANYSFCNEENSSPKTNSWTEG--TDCCSWDGVTCD   72 (200)
Q Consensus        22 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~--~~~c~w~gv~c~   72 (200)
                      ++|++||++||+.+..+ ..          ..+.+|+.+  .++|+|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~-~~----------~~l~~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNND-PS----------GVLSSWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-S-C-----------CCCTT--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccc-cC----------cccccCCCcCCCCCeeeccEEeC
Confidence            67999999999999864 22          368899886  799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.79  E-value=3.9e-10  Score=99.11  Aligned_cols=105  Identities=24%  Similarity=0.298  Sum_probs=81.7

Q ss_pred             cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCC
Q 037769           77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT  156 (200)
Q Consensus        77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~  156 (200)
                      ++++|++  +.|.++ .+|+  .+++++.|+.|.+.+|+++-..+|+.|+.|..|+.+.+++|.+. .+|..+..+..|+
T Consensus       269 ~lEtLNl--SrNQLt-~LP~--avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~  342 (1255)
T KOG0444|consen  269 NLETLNL--SRNQLT-VLPD--AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQ  342 (1255)
T ss_pred             hhhhhcc--ccchhc-cchH--HHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHH
Confidence            4555566  666666 5666  67778888888888887776567888888888888888888887 7788888888888


Q ss_pred             EEeccCCcCCCCCCchhhhhcCCCCCCEEeccccc
Q 037769          157 HLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATN  191 (200)
Q Consensus       157 ~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~  191 (200)
                      .|.|+.|.+    -.+|..+.-|+.|+.||+.+|+
T Consensus       343 kL~L~~NrL----iTLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  343 KLKLDHNRL----ITLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             Hhcccccce----eechhhhhhcCCcceeeccCCc
Confidence            888888887    4678888888888888888886

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.79  E-value=1.1e-07  Score=87.23  Aligned_cols=22  Identities=9%  Similarity=0.086  Sum_probs=17.0

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCC
Q 037769           17 THSCPPEQSLALLQFKNNTYVR   38 (200)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~~   38 (200)
                      .....+++...++++.+.+..+
T Consensus        57 ~~~~~~~~~~~~~~~~~~l~~p   78 (754)
T PRK15370         57 PETASPEEIKSKFECLRMLAFP   78 (754)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCC
Confidence            3455678899999998888766

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.78  E-value=2.7e-10  Score=103.22  Aligned_cols=108  Identities=25%  Similarity=0.339  Sum_probs=94.0

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      ..++.|.+  .+|.++...-+  .+.++++|++|+|++|.+... ....+.++..|+.|+|++|+++ .+|..+.++..|
T Consensus       359 ~~Lq~Lyl--anN~Ltd~c~p--~l~~~~hLKVLhLsyNrL~~f-pas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L  432 (1081)
T KOG0618|consen  359 AALQELYL--ANNHLTDSCFP--VLVNFKHLKVLHLSYNRLNSF-PASKLRKLEELEELNLSGNKLT-TLPDTVANLGRL  432 (1081)
T ss_pred             HHHHHHHH--hcCcccccchh--hhccccceeeeeecccccccC-CHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhh
Confidence            35677788  89999877666  699999999999999999863 3345778999999999999999 899999999999


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL  194 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g  194 (200)
                      ++|...+|++    ..+| ++..++.|+.+|++.|+++-
T Consensus       433 ~tL~ahsN~l----~~fP-e~~~l~qL~~lDlS~N~L~~  466 (1081)
T KOG0618|consen  433 HTLRAHSNQL----LSFP-ELAQLPQLKVLDLSCNNLSE  466 (1081)
T ss_pred             HHHhhcCCce----eech-hhhhcCcceEEecccchhhh
Confidence            9999999999    3677 78999999999999999863

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.78  E-value=5.9e-09  Score=95.31  Aligned_cols=41  Identities=15%  Similarity=-0.004  Sum_probs=32.1

Q ss_pred             CCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCC
Q 037769          154 KLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPF  198 (200)
Q Consensus       154 ~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~  198 (200)
                      +|+.|++++|++    ..+|..+.++++|+.|+|++|+|+|.+|.
T Consensus       423 ~L~~L~Ls~NqL----t~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        423 GLLSLSVYRNQL----TRLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             hhhhhhhccCcc----cccChHHhhccCCCeEECCCCCCCchHHH
Confidence            345556666666    35788899999999999999999988764

>PLN03210 Resistant to P

Probab=98.68  E-value=1.2e-07  Score=91.18  Aligned_cols=110  Identities=25%  Similarity=0.240  Sum_probs=57.9

Q ss_pred             cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCC
Q 037769           77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT  156 (200)
Q Consensus        77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~  156 (200)
                      +++.|++  .++.+. .++.  .+..+++|+.|+|+++..... +| .+..+++|+.|+|++|.....+|..+..+++|+
T Consensus       612 ~L~~L~L--~~s~l~-~L~~--~~~~l~~Lk~L~Ls~~~~l~~-ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~  684 (1153)
T PLN03210        612 NLVKLQM--QGSKLE-KLWD--GVHSLTGLRNIDLRGSKNLKE-IP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLE  684 (1153)
T ss_pred             CCcEEEC--cCcccc-cccc--ccccCCCCCEEECCCCCCcCc-CC-ccccCCcccEEEecCCCCccccchhhhccCCCC
Confidence            4455555  555544 3333  345555666666655443333 44 255556666666665544445565566666666


Q ss_pred             EEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCC
Q 037769          157 HLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKP  197 (200)
Q Consensus       157 ~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP  197 (200)
                      .|++++|..   ...+|..+ ++++|+.|++++|...+.+|
T Consensus       685 ~L~L~~c~~---L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p  721 (1153)
T PLN03210        685 DLDMSRCEN---LEILPTGI-NLKSLYRLNLSGCSRLKSFP  721 (1153)
T ss_pred             EEeCCCCCC---cCccCCcC-CCCCCCEEeCCCCCCccccc
Confidence            666665433   23444433 55666666666655444444

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=98.68  E-value=7.9e-08  Score=92.31  Aligned_cols=110  Identities=21%  Similarity=0.134  Sum_probs=53.5

Q ss_pred             cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCC
Q 037769           77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT  156 (200)
Q Consensus        77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~  156 (200)
                      +++.|++  .++.+. .+|.  .+ .+.+|+.|++.+|.+..  ++..+..+++|+.|+|+++...+.+|. +..+++|+
T Consensus       590 ~Lr~L~~--~~~~l~-~lP~--~f-~~~~L~~L~L~~s~l~~--L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le  660 (1153)
T PLN03210        590 KLRLLRW--DKYPLR-CMPS--NF-RPENLVKLQMQGSKLEK--LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLE  660 (1153)
T ss_pred             ccEEEEe--cCCCCC-CCCC--cC-CccCCcEEECcCccccc--cccccccCCCCCEEECCCCCCcCcCCc-cccCCccc
Confidence            3455555  444443 3343  22 34555555555555543  444445555555555555443334442 44555555


Q ss_pred             EEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCC
Q 037769          157 HLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPF  198 (200)
Q Consensus       157 ~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~  198 (200)
                      .|+|++|..   ...+|..++++++|+.|++++|...+.+|.
T Consensus       661 ~L~L~~c~~---L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~  699 (1153)
T PLN03210        661 TLKLSDCSS---LVELPSSIQYLNKLEDLDMSRCENLEILPT  699 (1153)
T ss_pred             EEEecCCCC---ccccchhhhccCCCCEEeCCCCCCcCccCC
Confidence            555555443   234555555555555555555443334443

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.67  E-value=7.7e-09  Score=85.10  Aligned_cols=90  Identities=26%  Similarity=0.346  Sum_probs=43.3

Q ss_pred             CCCcEEEccCCCCCCCC---CChhccCCCCCCEEeccCCcCCCC----CcccccCCCCCCEEeccCCcCCCC-CCchhhh
Q 037769          104 SHLQSLNLAYSNFLGSQ---LSPEFGRLKELTYLNLSASNFGGL----VPYEMSHSSKLTHLDLSFCVLTIE-HRTFDLL  175 (200)
Q Consensus       104 ~~L~~L~L~~n~l~~~~---~p~~l~~l~~L~~L~Ls~n~l~~~----~P~~l~~l~~L~~L~Ls~N~l~~~-~~~lp~~  175 (200)
                      ++|+.|++++|.+++..   ++..+..+++|+.|++++|.+++.    ++..+..+++|++|++++|.+++. ...+...
T Consensus       137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~  216 (319)
T cd00116         137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET  216 (319)
T ss_pred             CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence            55566666666555320   122334445566666666555531    222333444566666666655310 0112334


Q ss_pred             hcCCCCCCEEecccccCC
Q 037769          176 ASNLTKLSLLYLGATNMS  193 (200)
Q Consensus       176 l~~l~~L~~L~Ls~N~l~  193 (200)
                      +..+++|++|++++|.++
T Consensus       217 ~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         217 LASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             hcccCCCCEEecCCCcCc
Confidence            445555666666666554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.65  E-value=8.4e-08  Score=87.91  Aligned_cols=101  Identities=16%  Similarity=0.218  Sum_probs=60.8

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      ..++.|++  ++|.++ .+|.  .+.  ++|+.|++++|.++.  +|..+.  .+|+.|+|++|.+. .+|..+.  .+|
T Consensus       199 ~~L~~L~L--s~N~Lt-sLP~--~l~--~nL~~L~Ls~N~Lts--LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L  264 (754)
T PRK15370        199 EQITTLIL--DNNELK-SLPE--NLQ--GNIKTLYANSNQLTS--IPATLP--DTIQEMELSINRIT-ELPERLP--SAL  264 (754)
T ss_pred             cCCcEEEe--cCCCCC-cCCh--hhc--cCCCEEECCCCcccc--CChhhh--ccccEEECcCCccC-cCChhHh--CCC
Confidence            35677777  777777 4554  332  467777777777764  555432  35666777777666 5555443  356


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCC
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKP  197 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP  197 (200)
                      +.|++++|+++    .+|..+.  ++|+.|++++|+|++ +|
T Consensus       265 ~~L~Ls~N~L~----~LP~~l~--~sL~~L~Ls~N~Lt~-LP  299 (754)
T PRK15370        265 QSLDLFHNKIS----CLPENLP--EELRYLSVYDNSIRT-LP  299 (754)
T ss_pred             CEEECcCCccC----ccccccC--CCCcEEECCCCcccc-Cc
Confidence            67777776663    3444332  356666666666663 44

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.60  E-value=2.6e-09  Score=92.74  Aligned_cols=87  Identities=21%  Similarity=0.294  Sum_probs=52.6

Q ss_pred             ccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCC
Q 037769          100 LFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNL  179 (200)
Q Consensus       100 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l  179 (200)
                      ++.+..|..|+.+.|.+..  +|..++.+.+|+.|.+..|++. .+|..+..| .|..||++.|+++    .+|..|.+|
T Consensus       162 ig~~~tl~~ld~s~nei~s--lpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis----~iPv~fr~m  233 (722)
T KOG0532|consen  162 IGLLPTLAHLDVSKNEIQS--LPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS----YLPVDFRKM  233 (722)
T ss_pred             cccchhHHHhhhhhhhhhh--chHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee----ecchhhhhh
Confidence            3344444444444444433  4444444555555555555554 345544432 3677788888883    678888888


Q ss_pred             CCCCEEecccccCCc
Q 037769          180 TKLSLLYLGATNMSL  194 (200)
Q Consensus       180 ~~L~~L~Ls~N~l~g  194 (200)
                      +.|++|-|.+|++..
T Consensus       234 ~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  234 RHLQVLQLENNPLQS  248 (722)
T ss_pred             hhheeeeeccCCCCC
Confidence            888888888888873

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.60  E-value=4.5e-09  Score=87.82  Aligned_cols=113  Identities=19%  Similarity=0.139  Sum_probs=93.6

Q ss_pred             CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccC-CcCCCCCcc-cccCC
Q 037769           75 TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSA-SNFGGLVPY-EMSHS  152 (200)
Q Consensus        75 ~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~P~-~l~~l  152 (200)
                      +...+.|+|  ..|.|+...+.  .|..++.|+.|||++|.|+.. -|+.|.++..|..|.+-+ |+|+ .+|. .|++|
T Consensus        66 P~~tveirL--dqN~I~~iP~~--aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL  139 (498)
T KOG4237|consen   66 PPETVEIRL--DQNQISSIPPG--AFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGL  139 (498)
T ss_pred             CCcceEEEe--ccCCcccCChh--hccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhH
Confidence            456799999  99999944445  899999999999999999988 899999999988877665 8998 5554 78899


Q ss_pred             CCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCC
Q 037769          153 SKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKP  197 (200)
Q Consensus       153 ~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP  197 (200)
                      ..|+-|.+.-|++   .-.....|..|++|..|.+.+|.+. .|+
T Consensus       140 ~slqrLllNan~i---~Cir~~al~dL~~l~lLslyDn~~q-~i~  180 (498)
T KOG4237|consen  140 SSLQRLLLNANHI---NCIRQDALRDLPSLSLLSLYDNKIQ-SIC  180 (498)
T ss_pred             HHHHHHhcChhhh---cchhHHHHHHhhhcchhcccchhhh-hhc
Confidence            9999999988888   3455677889999999999998876 344

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.59  E-value=2.1e-08  Score=82.52  Aligned_cols=115  Identities=21%  Similarity=0.146  Sum_probs=86.1

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCC---CcEEEccCCCCCCCC---CChhccCC-CCCCEEeccCCcCCCC----
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSH---LQSLNLAYSNFLGSQ---LSPEFGRL-KELTYLNLSASNFGGL----  144 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~---L~~L~L~~n~l~~~~---~p~~l~~l-~~L~~L~Ls~n~l~~~----  144 (200)
                      .+++.|++  ++|.+.+..+.  .+..+..   |++|++++|.+....   +...+..+ ++|+.|++++|.+++.    
T Consensus        81 ~~L~~L~l--~~~~~~~~~~~--~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  156 (319)
T cd00116          81 CGLQELDL--SDNALGPDGCG--VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA  156 (319)
T ss_pred             CceeEEEc--cCCCCChhHHH--HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence            58999999  99998765555  4555555   999999999987421   23345666 8999999999999853    


Q ss_pred             CcccccCCCCCCEEeccCCcCCCC-CCchhhhhcCCCCCCEEecccccCCc
Q 037769          145 VPYEMSHSSKLTHLDLSFCVLTIE-HRTFDLLASNLTKLSLLYLGATNMSL  194 (200)
Q Consensus       145 ~P~~l~~l~~L~~L~Ls~N~l~~~-~~~lp~~l~~l~~L~~L~Ls~N~l~g  194 (200)
                      ++..+..+.+|++|++++|.+++. ...++..+..+++|++|++++|.+.+
T Consensus       157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  207 (319)
T cd00116         157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTD  207 (319)
T ss_pred             HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccCh
Confidence            334566778999999999999531 01244556677899999999998864

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.58  E-value=9.1e-09  Score=83.64  Aligned_cols=107  Identities=21%  Similarity=0.119  Sum_probs=65.1

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      ++++.|++  ++|++. .+.   .+..+.+|+.|||++|.++.  +...-..+.++++|.|+.|.+..  -..++.+.+|
T Consensus       307 Pkir~L~l--S~N~i~-~v~---nLa~L~~L~~LDLS~N~Ls~--~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSL  376 (490)
T KOG1259|consen  307 PKLRRLIL--SQNRIR-TVQ---NLAELPQLQLLDLSGNLLAE--CVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSL  376 (490)
T ss_pred             cceeEEec--ccccee-eeh---hhhhcccceEeecccchhHh--hhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhh
Confidence            45555666  555554 222   24555566666666665553  23333345556666666665541  1345667788


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL  194 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g  194 (200)
                      ..||+++|++...  +--..+++|+.|+++.|.+|++.+
T Consensus       377 vnLDl~~N~Ie~l--deV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  377 VNLDLSSNQIEEL--DEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             eeccccccchhhH--HHhcccccccHHHHHhhcCCCccc
Confidence            8889999888311  112457889999999999999886

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.54  E-value=1.2e-08  Score=82.98  Aligned_cols=104  Identities=20%  Similarity=0.182  Sum_probs=86.5

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      ..++++||  ++|.|+ .+..  ++.-++.++.|+++.|.+...   ..+..+.+|+.|||++|.++ .+-.+-..+-++
T Consensus       284 q~LtelDL--S~N~I~-~iDE--SvKL~Pkir~L~lS~N~i~~v---~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNI  354 (490)
T KOG1259|consen  284 QELTELDL--SGNLIT-QIDE--SVKLAPKLRRLILSQNRIRTV---QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNI  354 (490)
T ss_pred             hhhhhccc--cccchh-hhhh--hhhhccceeEEeccccceeee---hhhhhcccceEeecccchhH-hhhhhHhhhcCE
Confidence            46788999  999988 6777  788899999999999999853   45889999999999999988 444444466688


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCC
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMS  193 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~  193 (200)
                      ++|.|++|.+    .. -..+++|-+|..||+++|+|.
T Consensus       355 KtL~La~N~i----E~-LSGL~KLYSLvnLDl~~N~Ie  387 (490)
T KOG1259|consen  355 KTLKLAQNKI----ET-LSGLRKLYSLVNLDLSSNQIE  387 (490)
T ss_pred             eeeehhhhhH----hh-hhhhHhhhhheeccccccchh
Confidence            9999999998    23 355788899999999999886

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.50  E-value=1.4e-08  Score=88.37  Aligned_cols=110  Identities=24%  Similarity=0.299  Sum_probs=96.0

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      ..++.|+|  +.|.+. .+|.  .++.++ |+.|-+++|+++.  +|..++.+.+|..||.+.|.+. .+|..++++.+|
T Consensus       121 ~~lt~l~l--s~NqlS-~lp~--~lC~lp-Lkvli~sNNkl~~--lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl  191 (722)
T KOG0532|consen  121 EALTFLDL--SSNQLS-HLPD--GLCDLP-LKVLIVSNNKLTS--LPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL  191 (722)
T ss_pred             hHHHHhhh--ccchhh-cCCh--hhhcCc-ceeEEEecCcccc--CCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH
Confidence            35678899  999988 7777  677776 8999999999986  8999999999999999999998 789999999999


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCCCC
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL  200 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~~~  200 (200)
                      +.|.+..|++    ..+|.++..| .|..||++.|+++ .||.+|
T Consensus       192 r~l~vrRn~l----~~lp~El~~L-pLi~lDfScNkis-~iPv~f  230 (722)
T KOG0532|consen  192 RDLNVRRNHL----EDLPEELCSL-PLIRLDFSCNKIS-YLPVDF  230 (722)
T ss_pred             HHHHHhhhhh----hhCCHHHhCC-ceeeeecccCcee-ecchhh
Confidence            9999999999    4789988866 4889999999998 688754

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.43  E-value=6.8e-07  Score=82.03  Aligned_cols=54  Identities=13%  Similarity=0.141  Sum_probs=33.1

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFG  142 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~  142 (200)
                      .+++.|++  ..|.++ .+|.  .   +++|++|++++|+++.  +|..   .++|+.|++++|.+.
T Consensus       222 ~~L~~L~L--~~N~Lt-~LP~--l---p~~Lk~LdLs~N~Lts--LP~l---p~sL~~L~Ls~N~L~  275 (788)
T PRK15387        222 AHITTLVI--PDNNLT-SLPA--L---PPELRTLEVSGNQLTS--LPVL---PPGLLELSIFSNPLT  275 (788)
T ss_pred             cCCCEEEc--cCCcCC-CCCC--C---CCCCcEEEecCCccCc--ccCc---ccccceeeccCCchh
Confidence            35677777  777776 3554  2   4678888888888875  5532   234445544444444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.40  E-value=1.4e-07  Score=87.86  Aligned_cols=107  Identities=24%  Similarity=0.290  Sum_probs=86.6

Q ss_pred             CcEEEEEcccCCCC--CeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCC
Q 037769           76 GNVIGLDLYSSCSW--LVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSS  153 (200)
Q Consensus        76 ~~l~~L~L~~~~n~--l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~  153 (200)
                      .++++|-+  ..|.  +. .++.+ .|..++.|++|||++|.-.+. +|..++.|-+||+|++++..+. .+|..+++|+
T Consensus       545 ~~L~tLll--~~n~~~l~-~is~~-ff~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk  618 (889)
T KOG4658|consen  545 PKLRTLLL--QRNSDWLL-EISGE-FFRSLPLLRVLDLSGNSSLSK-LPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLK  618 (889)
T ss_pred             CccceEEE--eecchhhh-hcCHH-HHhhCcceEEEECCCCCccCc-CChHHhhhhhhhcccccCCCcc-ccchHHHHHH
Confidence            46788888  7775  33 33321 578899999999998776666 9999999999999999999999 8999999999


Q ss_pred             CCCEEeccCCcCCCCCCchhhhhcCCCCCCEEeccccc
Q 037769          154 KLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATN  191 (200)
Q Consensus       154 ~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~  191 (200)
                      .|.+|++..+..   ...+|.....|.+|++|.+..-.
T Consensus       619 ~L~~Lnl~~~~~---l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  619 KLIYLNLEVTGR---LESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             hhheeccccccc---cccccchhhhcccccEEEeeccc
Confidence            999999998775   34456667779999999876643

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.38  E-value=7.4e-08  Score=80.68  Aligned_cols=91  Identities=22%  Similarity=0.127  Sum_probs=77.5

Q ss_pred             cccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcC
Q 037769           99 TLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASN  178 (200)
Q Consensus        99 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~  178 (200)
                      .|..+++|++|+|++|.++.. -+..|..+.+++.|.|..|++...--.-|.++..|++|+|.+|+++   ...|..|..
T Consensus       269 cf~~L~~L~~lnlsnN~i~~i-~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it---~~~~~aF~~  344 (498)
T KOG4237|consen  269 CFKKLPNLRKLNLSNNKITRI-EDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT---TVAPGAFQT  344 (498)
T ss_pred             HHhhcccceEeccCCCccchh-hhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE---EEecccccc
Confidence            578899999999999999987 7888999999999999999987544456788999999999999995   456778888


Q ss_pred             CCCCCEEecccccCC
Q 037769          179 LTKLSLLYLGATNMS  193 (200)
Q Consensus       179 l~~L~~L~Ls~N~l~  193 (200)
                      +..|..|+|-.|++.
T Consensus       345 ~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  345 LFSLSTLNLLSNPFN  359 (498)
T ss_pred             cceeeeeehccCccc
Confidence            999999999888764

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.33  E-value=2.8e-07  Score=78.55  Aligned_cols=103  Identities=26%  Similarity=0.292  Sum_probs=59.8

Q ss_pred             cEEEEEcccCCCCCeeccCCCccccCCC-CCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           77 NVIGLDLYSSCSWLVGTIDDNSTLFHLS-HLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~-~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .++.+++  ..|.+. .+++  ....++ +|+.|++++|.+..  +|..+..++.|+.|++++|.+. .+|...+.++.|
T Consensus       117 ~l~~L~l--~~n~i~-~i~~--~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L  188 (394)
T COG4886         117 NLTSLDL--DNNNIT-DIPP--LIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNL  188 (394)
T ss_pred             ceeEEec--CCcccc-cCcc--ccccchhhcccccccccchhh--hhhhhhccccccccccCCchhh-hhhhhhhhhhhh
Confidence            4566666  666655 4444  344443 66666666666654  4455666666666666666666 455544456666


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEeccccc
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATN  191 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~  191 (200)
                      +.|++++|++    ..+|.....+..|+.|.+++|.
T Consensus       189 ~~L~ls~N~i----~~l~~~~~~~~~L~~l~~~~N~  220 (394)
T COG4886         189 NNLDLSGNKI----SDLPPEIELLSALEELDLSNNS  220 (394)
T ss_pred             hheeccCCcc----ccCchhhhhhhhhhhhhhcCCc
Confidence            6666666666    2455544444556666666663

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.31  E-value=3.8e-07  Score=77.71  Aligned_cols=107  Identities=35%  Similarity=0.478  Sum_probs=89.0

Q ss_pred             EEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCC-CCCEEeccCCcCCCCCcccccCCCCCCEE
Q 037769           80 GLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLK-ELTYLNLSASNFGGLVPYEMSHSSKLTHL  158 (200)
Q Consensus        80 ~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L  158 (200)
                      .+++  ..+.+...+..   +..++.++.|++.+|.++.  +|+....+. +|+.|++++|.+. .+|..+..+++|+.|
T Consensus        97 ~l~~--~~~~~~~~~~~---~~~~~~l~~L~l~~n~i~~--i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L  168 (394)
T COG4886          97 SLDL--NLNRLRSNISE---LLELTNLTSLDLDNNNITD--IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNL  168 (394)
T ss_pred             eeec--cccccccCchh---hhcccceeEEecCCccccc--Cccccccchhhcccccccccchh-hhhhhhhcccccccc
Confidence            4666  67766434433   6677899999999999987  788777785 9999999999998 777788999999999


Q ss_pred             eccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCCC
Q 037769          159 DLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFS  199 (200)
Q Consensus       159 ~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~~  199 (200)
                      ++++|+++    .+|.....++.|+.|++++|++. .||..
T Consensus       169 ~l~~N~l~----~l~~~~~~~~~L~~L~ls~N~i~-~l~~~  204 (394)
T COG4886         169 DLSFNDLS----DLPKLLSNLSNLNNLDLSGNKIS-DLPPE  204 (394)
T ss_pred             ccCCchhh----hhhhhhhhhhhhhheeccCCccc-cCchh
Confidence            99999994    67777778899999999999998 57753

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.24  E-value=1.8e-06  Score=50.49  Aligned_cols=35  Identities=31%  Similarity=0.373  Sum_probs=16.2

Q ss_pred             CCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcC
Q 037769          130 ELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVL  165 (200)
Q Consensus       130 ~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l  165 (200)
                      +|++|++++|+++ .+|..+++|++|+.|++++|++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence            3455555555554 3444444555555555555544

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.21  E-value=5.7e-08  Score=86.82  Aligned_cols=103  Identities=32%  Similarity=0.324  Sum_probs=74.1

Q ss_pred             cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcc-cccCCCCC
Q 037769           77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPY-EMSHSSKL  155 (200)
Q Consensus        77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~-~l~~l~~L  155 (200)
                      .+..+++  +.|.+. .+..  ++.-+++|+.|+|++|+++..   +.+..+++|++|||++|.+. .+|. ...+++ |
T Consensus       165 ~L~~a~f--syN~L~-~mD~--SLqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L  234 (1096)
T KOG1859|consen  165 KLATASF--SYNRLV-LMDE--SLQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-L  234 (1096)
T ss_pred             hHhhhhc--chhhHH-hHHH--HHHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchhc-cccccchhhhh-h
Confidence            4566677  777776 5555  677788888888888888763   36778888888888888887 5554 233333 8


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL  194 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g  194 (200)
                      +.|.+.+|.++    .+ ..+.+|++|+.||+++|-|++
T Consensus       235 ~~L~lrnN~l~----tL-~gie~LksL~~LDlsyNll~~  268 (1096)
T KOG1859|consen  235 QLLNLRNNALT----TL-RGIENLKSLYGLDLSYNLLSE  268 (1096)
T ss_pred             eeeeecccHHH----hh-hhHHhhhhhhccchhHhhhhc
Confidence            88888888773    22 346778888888888887664

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.15  E-value=3e-06  Score=49.60  Aligned_cols=36  Identities=36%  Similarity=0.360  Sum_probs=19.9

Q ss_pred             CCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCC
Q 037769          154 KLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMS  193 (200)
Q Consensus       154 ~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~  193 (200)
                      +|++|++++|+++    .+|..+++|++|+.|++++|+|+
T Consensus         2 ~L~~L~l~~N~i~----~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT----DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S----SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc----ccCchHhCCCCCCEEEecCCCCC
Confidence            4556666666662    45555566666666666666555

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.12  E-value=2e-07  Score=67.79  Aligned_cols=83  Identities=19%  Similarity=0.151  Sum_probs=56.0

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .+++.++|  ++|.+....+.  .-..++.++.|+|++|.++.  +|.++..++.|+.|+++.|.+. ..|.-+..|.+|
T Consensus        53 ~el~~i~l--s~N~fk~fp~k--ft~kf~t~t~lNl~~neisd--vPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l  125 (177)
T KOG4579|consen   53 YELTKISL--SDNGFKKFPKK--FTIKFPTATTLNLANNEISD--VPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKL  125 (177)
T ss_pred             ceEEEEec--ccchhhhCCHH--Hhhccchhhhhhcchhhhhh--chHHHhhhHHhhhcccccCccc-cchHHHHHHHhH
Confidence            45677777  77777633223  33345677777777777765  6777777777777777777777 556666667777


Q ss_pred             CEEeccCCcC
Q 037769          156 THLDLSFCVL  165 (200)
Q Consensus       156 ~~L~Ls~N~l  165 (200)
                      -.|+..+|..
T Consensus       126 ~~Lds~~na~  135 (177)
T KOG4579|consen  126 DMLDSPENAR  135 (177)
T ss_pred             HHhcCCCCcc
Confidence            7777777666

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.10  E-value=3.4e-07  Score=66.60  Aligned_cols=110  Identities=25%  Similarity=0.255  Sum_probs=85.1

Q ss_pred             cEEEEEcccCCCCCeeccCCCc-cccCCCCCcEEEccCCCCCCCCCChhccC-CCCCCEEeccCCcCCCCCcccccCCCC
Q 037769           77 NVIGLDLYSSCSWLVGTIDDNS-TLFHLSHLQSLNLAYSNFLGSQLSPEFGR-LKELTYLNLSASNFGGLVPYEMSHSSK  154 (200)
Q Consensus        77 ~l~~L~L~~~~n~l~~~~p~~~-~l~~l~~L~~L~L~~n~l~~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~P~~l~~l~~  154 (200)
                      ....++|  +.+.+- .++++. .+....+|+.++|++|.+..  +|+.|.. .+.++.|++++|.++ .+|.++..++.
T Consensus        28 E~h~ldL--ssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~--fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~a  101 (177)
T KOG4579|consen   28 ELHFLDL--SSCQLM-YIADAVYMLSKGYELTKISLSDNGFKK--FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPA  101 (177)
T ss_pred             Hhhhccc--ccchhh-HHHHHHHHHhCCceEEEEecccchhhh--CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHH
Confidence            4456677  766553 333300 24456678888999999986  6777765 468999999999999 79999999999


Q ss_pred             CCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCC
Q 037769          155 LTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKP  197 (200)
Q Consensus       155 L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP  197 (200)
                      |+.|+++.|.+.    ..|..+..|.+|-.|+..+|.+. +||
T Consensus       102 Lr~lNl~~N~l~----~~p~vi~~L~~l~~Lds~~na~~-eid  139 (177)
T KOG4579|consen  102 LRSLNLRFNPLN----AEPRVIAPLIKLDMLDSPENARA-EID  139 (177)
T ss_pred             hhhcccccCccc----cchHHHHHHHhHHHhcCCCCccc-cCc
Confidence            999999999994    56777777889999999888776 455

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.93  E-value=7.7e-06  Score=76.42  Aligned_cols=109  Identities=24%  Similarity=0.152  Sum_probs=83.6

Q ss_pred             cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCC--CCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCC
Q 037769           77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSN--FLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSK  154 (200)
Q Consensus        77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~--l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~  154 (200)
                      .++++.+  -+|.+. .++.   -...+.|+.|-+..|.  +... ....|..++.|++|||++|.=-+.+|..++.|-+
T Consensus       524 ~~rr~s~--~~~~~~-~~~~---~~~~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~  596 (889)
T KOG4658|consen  524 SVRRMSL--MNNKIE-HIAG---SSENPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH  596 (889)
T ss_pred             heeEEEE--eccchh-hccC---CCCCCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence            4555666  555544 3333   1234478888888886  4432 3345788999999999998877799999999999


Q ss_pred             CCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCC
Q 037769          155 LTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIK  196 (200)
Q Consensus       155 L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~i  196 (200)
                      |++|++++..+    ..+|..+++|+.|.+|++..+.-...+
T Consensus       597 LryL~L~~t~I----~~LP~~l~~Lk~L~~Lnl~~~~~l~~~  634 (889)
T KOG4658|consen  597 LRYLDLSDTGI----SHLPSGLGNLKKLIYLNLEVTGRLESI  634 (889)
T ss_pred             hhcccccCCCc----cccchHHHHHHhhheeccccccccccc
Confidence            99999999999    479999999999999999987654334

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.85  E-value=2.1e-06  Score=72.81  Aligned_cols=17  Identities=24%  Similarity=0.436  Sum_probs=11.4

Q ss_pred             cCCCCCCEEecccccCC
Q 037769          177 SNLTKLSLLYLGATNMS  193 (200)
Q Consensus       177 ~~l~~L~~L~Ls~N~l~  193 (200)
                      ..+++|++|+++.|++.
T Consensus       298 ~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  298 HTFPKLEYLNISENNIR  314 (505)
T ss_pred             cccccceeeecccCccc
Confidence            45567777777777764

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.81  E-value=2.9e-05  Score=59.97  Aligned_cols=105  Identities=20%  Similarity=0.104  Sum_probs=75.4

Q ss_pred             cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcc--cccCCCC
Q 037769           77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPY--EMSHSSK  154 (200)
Q Consensus        77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~--~l~~l~~  154 (200)
                      ....+||  +.|.+. .++   .|..++.|..|.+.+|.|+.. -|.--..++.|..|.|.+|++. .+.+  .+..+++
T Consensus        43 ~~d~iDL--tdNdl~-~l~---~lp~l~rL~tLll~nNrIt~I-~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~  114 (233)
T KOG1644|consen   43 QFDAIDL--TDNDLR-KLD---NLPHLPRLHTLLLNNNRITRI-DPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPK  114 (233)
T ss_pred             ccceecc--cccchh-hcc---cCCCccccceEEecCCcceee-ccchhhhccccceEEecCcchh-hhhhcchhccCCc
Confidence            4567889  888876 444   377788999999999999975 4444445778999999999887 3332  4667889


Q ss_pred             CCEEeccCCcCCCCCCchhhhhcCCCCCCEEeccc
Q 037769          155 LTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGA  189 (200)
Q Consensus       155 L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~  189 (200)
                      |++|.+-+|..+....----.+..+++|+.||+..
T Consensus       115 L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  115 LEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             cceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            99999999988411000012367788999998764

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.81  E-value=4e-06  Score=71.15  Aligned_cols=89  Identities=24%  Similarity=0.247  Sum_probs=37.8

Q ss_pred             CCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCC-Cccc-----ccCCCCCCEEeccCCcCCCCCCchhhhh
Q 037769          103 LSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGL-VPYE-----MSHSSKLTHLDLSFCVLTIEHRTFDLLA  176 (200)
Q Consensus       103 l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~P~~-----l~~l~~L~~L~Ls~N~l~~~~~~lp~~l  176 (200)
                      +..|+.|+|++|++-..+.-...+.++.|+.|+++.+.+... .|+.     ...+++|++|++..|++.  ....-..+
T Consensus       245 ~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~--~w~sl~~l  322 (505)
T KOG3207|consen  245 LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR--DWRSLNHL  322 (505)
T ss_pred             hhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc--cccccchh
Confidence            344445555555443311112334455555555555544321 2221     233455555555555552  11111223


Q ss_pred             cCCCCCCEEecccccCC
Q 037769          177 SNLTKLSLLYLGATNMS  193 (200)
Q Consensus       177 ~~l~~L~~L~Ls~N~l~  193 (200)
                      ..+++|+.|.+..|.++
T Consensus       323 ~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  323 RTLENLKHLRITLNYLN  339 (505)
T ss_pred             hccchhhhhhccccccc
Confidence            34445555555555544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.78  E-value=6e-06  Score=71.13  Aligned_cols=104  Identities=26%  Similarity=0.312  Sum_probs=54.6

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      ..++.+++  ..|.|.. +..  .+..+.+|++|++++|.|+..   ..+..++.|+.|++++|.++. + ..+..++.|
T Consensus        95 ~~l~~l~l--~~n~i~~-i~~--~l~~~~~L~~L~ls~N~I~~i---~~l~~l~~L~~L~l~~N~i~~-~-~~~~~l~~L  164 (414)
T KOG0531|consen   95 KSLEALDL--YDNKIEK-IEN--LLSSLVNLQVLDLSFNKITKL---EGLSTLTLLKELNLSGNLISD-I-SGLESLKSL  164 (414)
T ss_pred             cceeeeec--cccchhh-ccc--chhhhhcchheeccccccccc---cchhhccchhhheeccCcchh-c-cCCccchhh
Confidence            34555566  5665552 222  244566666666666666542   224455556666666666652 2 223445566


Q ss_pred             CEEeccCCcCCCCCCchhhh-hcCCCCCCEEecccccCC
Q 037769          156 THLDLSFCVLTIEHRTFDLL-ASNLTKLSLLYLGATNMS  193 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~-l~~l~~L~~L~Ls~N~l~  193 (200)
                      +.+++++|.++    .+... ...+.+|+.+++.+|.+.
T Consensus       165 ~~l~l~~n~i~----~ie~~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  165 KLLDLSYNRIV----DIENDELSELISLEELDLGGNSIR  199 (414)
T ss_pred             hcccCCcchhh----hhhhhhhhhccchHHHhccCCchh
Confidence            66666666663    22221 345556666666666554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.73  E-value=1.3e-05  Score=69.13  Aligned_cols=104  Identities=23%  Similarity=0.226  Sum_probs=80.0

Q ss_pred             cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCC
Q 037769           77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT  156 (200)
Q Consensus        77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~  156 (200)
                      .+..+.+  ..|.+.. +-.  .+..+++|+.|++..|.+..  +...+..+.+|++|++++|.|+..-  .+..++.|+
T Consensus        73 ~l~~l~l--~~n~i~~-~~~--~l~~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~  143 (414)
T KOG0531|consen   73 SLKELNL--RQNLIAK-ILN--HLSKLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLK  143 (414)
T ss_pred             hHHhhcc--chhhhhh-hhc--ccccccceeeeeccccchhh--cccchhhhhcchheecccccccccc--chhhccchh
Confidence            4556667  7777763 222  47889999999999999987  4443788999999999999998442  356777799


Q ss_pred             EEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769          157 HLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL  194 (200)
Q Consensus       157 ~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g  194 (200)
                      .|++++|.++.    + ..+..++.|+.+++++|.+..
T Consensus       144 ~L~l~~N~i~~----~-~~~~~l~~L~~l~l~~n~i~~  176 (414)
T KOG0531|consen  144 ELNLSGNLISD----I-SGLESLKSLKLLDLSYNRIVD  176 (414)
T ss_pred             hheeccCcchh----c-cCCccchhhhcccCCcchhhh
Confidence            99999999942    2 345668899999999998874

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.71  E-value=7.2e-07  Score=79.94  Aligned_cols=105  Identities=23%  Similarity=0.315  Sum_probs=81.1

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChh-ccCCCCCCEEeccCCcCCCCCcccccCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPE-FGRLKELTYLNLSASNFGGLVPYEMSHSSK  154 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~  154 (200)
                      ..++.|+|  ++|.++ ...   .+..+++|+.|||++|.+..  +|.- ...+ +|+.|.+++|.++. + ..+.+|++
T Consensus       187 ~ale~LnL--shNk~~-~v~---~Lr~l~~LkhLDlsyN~L~~--vp~l~~~gc-~L~~L~lrnN~l~t-L-~gie~Lks  255 (1096)
T KOG1859|consen  187 PALESLNL--SHNKFT-KVD---NLRRLPKLKHLDLSYNCLRH--VPQLSMVGC-KLQLLNLRNNALTT-L-RGIENLKS  255 (1096)
T ss_pred             HHhhhhcc--chhhhh-hhH---HHHhcccccccccccchhcc--ccccchhhh-hheeeeecccHHHh-h-hhHHhhhh
Confidence            56889999  999987 332   48889999999999999986  4532 2233 49999999999873 2 35778999


Q ss_pred             CCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCC
Q 037769          155 LTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMS  193 (200)
Q Consensus       155 L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~  193 (200)
                      |+.|||++|-+.+.. .+ ..++.|..|+.|+|.+|++-
T Consensus       256 L~~LDlsyNll~~hs-eL-~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  256 LYGLDLSYNLLSEHS-EL-EPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hhccchhHhhhhcch-hh-hHHHHHHHHHHHhhcCCccc
Confidence            999999999986532 22 34567788999999999863

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.55  E-value=5.2e-05  Score=60.47  Aligned_cols=84  Identities=24%  Similarity=0.230  Sum_probs=47.9

Q ss_pred             ccCCCCCcEEEccCC--CCCCCCCChhccCCCCCCEEeccCCcCCCCCccc---ccCCCCCCEEeccCCcCCCCCCchhh
Q 037769          100 LFHLSHLQSLNLAYS--NFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYE---MSHSSKLTHLDLSFCVLTIEHRTFDL  174 (200)
Q Consensus       100 l~~l~~L~~L~L~~n--~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~---l~~l~~L~~L~Ls~N~l~~~~~~lp~  174 (200)
                      +-.|++|+.|.++.|  .+.+. ++.....+++|++|+++.|++..  +..   +..+.+|..|++..|..+....---.
T Consensus        61 ~P~Lp~LkkL~lsdn~~~~~~~-l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~  137 (260)
T KOG2739|consen   61 FPKLPKLKKLELSDNYRRVSGG-LEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREK  137 (260)
T ss_pred             CCCcchhhhhcccCCccccccc-ceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccccccHHHH
Confidence            455667777777777  44444 44444555777777777777662  222   34455666777776655431111112


Q ss_pred             hhcCCCCCCEEe
Q 037769          175 LASNLTKLSLLY  186 (200)
Q Consensus       175 ~l~~l~~L~~L~  186 (200)
                      .|.-+++|++|+
T Consensus       138 vf~ll~~L~~LD  149 (260)
T KOG2739|consen  138 VFLLLPSLKYLD  149 (260)
T ss_pred             HHHHhhhhcccc
Confidence            355566666665

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.37  E-value=0.00029  Score=54.57  Aligned_cols=86  Identities=16%  Similarity=0.138  Sum_probs=67.4

Q ss_pred             CCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCC
Q 037769          103 LSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKL  182 (200)
Q Consensus       103 l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L  182 (200)
                      +.....+||++|.+..   -+.|..+..|.+|.+.+|+|+..-|..-..+++|+.|.|.+|.+.- .+++ .-+..+++|
T Consensus        41 ~d~~d~iDLtdNdl~~---l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~-l~dl-~pLa~~p~L  115 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRK---LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE-LGDL-DPLASCPKL  115 (233)
T ss_pred             ccccceecccccchhh---cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhh-hhhc-chhccCCcc
Confidence            3456789999999974   3468889999999999999996656544566789999999999842 1222 236788999


Q ss_pred             CEEecccccCC
Q 037769          183 SLLYLGATNMS  193 (200)
Q Consensus       183 ~~L~Ls~N~l~  193 (200)
                      ++|.+-+|++.
T Consensus       116 ~~Ltll~Npv~  126 (233)
T KOG1644|consen  116 EYLTLLGNPVE  126 (233)
T ss_pred             ceeeecCCchh
Confidence            99999999876

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.25  E-value=0.00011  Score=67.22  Aligned_cols=91  Identities=22%  Similarity=0.219  Sum_probs=53.3

Q ss_pred             ccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCC-CCcccccCCCCCCEEeccCCcCCCCCCchh----h
Q 037769          100 LFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGG-LVPYEMSHSSKLTHLDLSFCVLTIEHRTFD----L  174 (200)
Q Consensus       100 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp----~  174 (200)
                      ..++++|..||+++.+++.  + ..++.|++|+.|.+.+=.+.. ..-..+.+|++|++||+|........ .+.    +
T Consensus       169 c~sFpNL~sLDIS~TnI~n--l-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~-~ii~qYle  244 (699)
T KOG3665|consen  169 CASFPNLRSLDISGTNISN--L-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT-KIIEQYLE  244 (699)
T ss_pred             hhccCccceeecCCCCccC--c-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccch-HHHHHHHH
Confidence            3456666666776666653  2 456666666666665544441 11124557788888888876663211 111    1


Q ss_pred             hhcCCCCCCEEecccccCCc
Q 037769          175 LASNLTKLSLLYLGATNMSL  194 (200)
Q Consensus       175 ~l~~l~~L~~L~Ls~N~l~g  194 (200)
                      --..|++|+.||.|+..+.+
T Consensus       245 c~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  245 CGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             hcccCccccEEecCCcchhH
Confidence            22347788888888776654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.17  E-value=0.00026  Score=56.53  Aligned_cols=90  Identities=20%  Similarity=0.153  Sum_probs=61.3

Q ss_pred             ccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCC--cCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhc
Q 037769          100 LFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSAS--NFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLAS  177 (200)
Q Consensus       100 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n--~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~  177 (200)
                      ...+..|+.|.+.+..++..   ..+..|++|+.|.++.|  ++.+.++.....+++|+++++++|++.. ...+ ..+.
T Consensus        39 ~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl-~pl~  113 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTL-RPLK  113 (260)
T ss_pred             cccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-cccc-chhh
Confidence            33455556666666666532   24567889999999999  6666666656667999999999999852 1122 2356


Q ss_pred             CCCCCCEEecccccCCc
Q 037769          178 NLTKLSLLYLGATNMSL  194 (200)
Q Consensus       178 ~l~~L~~L~Ls~N~l~g  194 (200)
                      .+.+|..|++.+|..++
T Consensus       114 ~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  114 ELENLKSLDLFNCSVTN  130 (260)
T ss_pred             hhcchhhhhcccCCccc
Confidence            77788888888886553

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.14  E-value=0.00024  Score=65.04  Aligned_cols=108  Identities=23%  Similarity=0.199  Sum_probs=63.9

Q ss_pred             CcEEEEEcccCCCCCe--eccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCC
Q 037769           76 GNVIGLDLYSSCSWLV--GTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSS  153 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~--~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~  153 (200)
                      .+++.|++  ++...-  +++..  .-.-||+|+.|.+.+-.+...++-.-..++++|+.||+++.+++. + ..++.|+
T Consensus       122 ~nL~~LdI--~G~~~~s~~W~~k--ig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~Lk  195 (699)
T KOG3665|consen  122 QNLQHLDI--SGSELFSNGWPKK--IGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLK  195 (699)
T ss_pred             HhhhhcCc--cccchhhccHHHH--HhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccc
Confidence            46777777  665432  22222  122367777777777666543223334567777778888777763 2 5567777


Q ss_pred             CCCEEeccCCcCCCCCCchhhhhcCCCCCCEEeccccc
Q 037769          154 KLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATN  191 (200)
Q Consensus       154 ~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~  191 (200)
                      +|++|.+.+=.+.  ...--..+-+|++|++||+|...
T Consensus       196 nLq~L~mrnLe~e--~~~~l~~LF~L~~L~vLDIS~~~  231 (699)
T KOG3665|consen  196 NLQVLSMRNLEFE--SYQDLIDLFNLKKLRVLDISRDK  231 (699)
T ss_pred             cHHHHhccCCCCC--chhhHHHHhcccCCCeeeccccc
Confidence            7777766655552  11112345677777888777654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.13  E-value=0.00013  Score=59.72  Aligned_cols=85  Identities=19%  Similarity=0.137  Sum_probs=34.4

Q ss_pred             CCCcEEEccCCCCCCCC-CChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCC
Q 037769          104 SHLQSLNLAYSNFLGSQ-LSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKL  182 (200)
Q Consensus       104 ~~L~~L~L~~n~l~~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L  182 (200)
                      +.++.+||.+|.++... +-.-+.+|++|++|+|+.|.+...|-..-..+.+|++|-|.+..+.  -...-..+..++.+
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~--w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLS--WTQSTSSLDDLPKV  148 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCC--hhhhhhhhhcchhh
Confidence            34445555555544310 1111234455555555555544222111123334455555444442  11122334444444


Q ss_pred             CEEecccc
Q 037769          183 SLLYLGAT  190 (200)
Q Consensus       183 ~~L~Ls~N  190 (200)
                      +.|+++.|
T Consensus       149 telHmS~N  156 (418)
T KOG2982|consen  149 TELHMSDN  156 (418)
T ss_pred             hhhhhccc
Confidence            55555544

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.04  E-value=0.0022  Score=55.12  Aligned_cols=10  Identities=20%  Similarity=0.162  Sum_probs=5.8

Q ss_pred             CCCEEecccc
Q 037769          181 KLSLLYLGAT  190 (200)
Q Consensus       181 ~L~~L~Ls~N  190 (200)
                      +|+.|+++.|
T Consensus       178 SLk~L~ls~n  187 (426)
T PRK15386        178 SLQSITLHIE  187 (426)
T ss_pred             cCcEEEeccc
Confidence            5566665554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.93  E-value=0.0003  Score=58.40  Aligned_cols=116  Identities=14%  Similarity=0.064  Sum_probs=66.5

Q ss_pred             CcEEEEEcccCCCCCeeccCCC--ccccCCCCCcEEEccCCCCCCCC------------CChhccCCCCCCEEeccCCcC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDN--STLFHLSHLQSLNLAYSNFLGSQ------------LSPEFGRLKELTYLNLSASNF  141 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~--~~l~~l~~L~~L~L~~n~l~~~~------------~p~~l~~l~~L~~L~Ls~n~l  141 (200)
                      ++++.|+|  +.|-+...-++.  ..+.....|++|+|.+|.+....            .-..++.-+.|+++...+|++
T Consensus        92 ~~L~~ldL--SDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl  169 (382)
T KOG1909|consen   92 PKLQKLDL--SDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL  169 (382)
T ss_pred             CceeEeec--cccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence            48999999  999876433320  03455788888888888875320            011233456788888888877


Q ss_pred             CCC----CcccccCCCCCCEEeccCCcCCCCC-CchhhhhcCCCCCCEEecccccCC
Q 037769          142 GGL----VPYEMSHSSKLTHLDLSFCVLTIEH-RTFDLLASNLTKLSLLYLGATNMS  193 (200)
Q Consensus       142 ~~~----~P~~l~~l~~L~~L~Ls~N~l~~~~-~~lp~~l~~l~~L~~L~Ls~N~l~  193 (200)
                      ...    +...+...+.|+.+.+.+|.+.-.. ..+-..+.++++|++|||.+|.|+
T Consensus       170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT  226 (382)
T ss_pred             ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence            532    1123444456666666666652100 012334556666666666666554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.70  E-value=0.00035  Score=58.03  Aligned_cols=93  Identities=20%  Similarity=0.219  Sum_probs=44.8

Q ss_pred             ccCCCCCcEEEccCCCCCCC---CCChhccCCCCCCEEeccCCcCCCCCcc----cc-cCCCCCCEEeccCCcCCCCC-C
Q 037769          100 LFHLSHLQSLNLAYSNFLGS---QLSPEFGRLKELTYLNLSASNFGGLVPY----EM-SHSSKLTHLDLSFCVLTIEH-R  170 (200)
Q Consensus       100 l~~l~~L~~L~L~~n~l~~~---~~p~~l~~l~~L~~L~Ls~n~l~~~~P~----~l-~~l~~L~~L~Ls~N~l~~~~-~  170 (200)
                      +..+++|++|||..|.++..   .+-..+..+++|+.|++++|.+...-..    .+ ...++|++|.+.+|.++--. .
T Consensus       209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~  288 (382)
T KOG1909|consen  209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL  288 (382)
T ss_pred             HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHH
Confidence            44555666666666655432   0123344455566666666655432111    11 12455666666666653100 0


Q ss_pred             chhhhhcCCCCCCEEecccccC
Q 037769          171 TFDLLASNLTKLSLLYLGATNM  192 (200)
Q Consensus       171 ~lp~~l~~l~~L~~L~Ls~N~l  192 (200)
                      .+-..+...+.|+.|+|++|.+
T Consensus       289 ~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  289 ALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHHHhcchhhHHhcCCcccc
Confidence            1222344456666666666665

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.38  E-value=0.00073  Score=55.42  Aligned_cols=84  Identities=24%  Similarity=0.235  Sum_probs=62.1

Q ss_pred             CcEEEEEcccCCCCCeec--cCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCC-CcccccCC
Q 037769           76 GNVIGLDLYSSCSWLVGT--IDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGL-VPYEMSHS  152 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~--~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~P~~l~~l  152 (200)
                      .+|+.+||  .+|.|..+  +..  .+.+|++|+.|+++.|++... +-..-..+.+|++|.|.+..+... .-..+..+
T Consensus        71 ~~v~elDL--~~N~iSdWseI~~--ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~l  145 (418)
T KOG2982|consen   71 TDVKELDL--TGNLISDWSEIGA--ILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDL  145 (418)
T ss_pred             hhhhhhhc--ccchhccHHHHHH--HHhcCccceEeeccCCcCCCc-cccCcccccceEEEEEcCCCCChhhhhhhhhcc
Confidence            47889999  99988743  333  577899999999999999865 432224567899999998888754 23345677


Q ss_pred             CCCCEEeccCCc
Q 037769          153 SKLTHLDLSFCV  164 (200)
Q Consensus       153 ~~L~~L~Ls~N~  164 (200)
                      +.++.|.++.|.
T Consensus       146 P~vtelHmS~N~  157 (418)
T KOG2982|consen  146 PKVTELHMSDNS  157 (418)
T ss_pred             hhhhhhhhccch
Confidence            788888888773

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.25  E-value=0.014  Score=50.31  Aligned_cols=52  Identities=15%  Similarity=0.113  Sum_probs=23.7

Q ss_pred             cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCC
Q 037769           77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSAS  139 (200)
Q Consensus        77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n  139 (200)
                      .++.|++  +++.+. .+|.   +  -.+|+.|.++++.--.. +|..+  ..+|+.|++++|
T Consensus        53 ~l~~L~I--s~c~L~-sLP~---L--P~sLtsL~Lsnc~nLts-LP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         53 ASGRLYI--KDCDIE-SLPV---L--PNELTEITIENCNNLTT-LPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             CCCEEEe--CCCCCc-ccCC---C--CCCCcEEEccCCCCccc-CCchh--hhhhhheEccCc
Confidence            3556666  655544 2222   1  12355566655332222 44333  235566666555

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.17  E-value=0.0016  Score=31.95  Aligned_cols=18  Identities=33%  Similarity=0.423  Sum_probs=12.0

Q ss_pred             CCCEEecccccCCcCCCCC
Q 037769          181 KLSLLYLGATNMSLIKPFS  199 (200)
Q Consensus       181 ~L~~L~Ls~N~l~g~iP~~  199 (200)
                      +|++|++++|+|+ .||++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~   18 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSS   18 (22)
T ss_dssp             TESEEEETSSEES-EEGTT
T ss_pred             CccEEECCCCcCE-eCChh
Confidence            3667777777776 56664

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.01  E-value=0.0022  Score=31.48  Aligned_cols=11  Identities=45%  Similarity=0.794  Sum_probs=4.5

Q ss_pred             CEEeccCCcCC
Q 037769          132 TYLNLSASNFG  142 (200)
Q Consensus       132 ~~L~Ls~n~l~  142 (200)
                      ++|+|++|+++
T Consensus         3 ~~Ldls~n~l~   13 (22)
T PF00560_consen    3 EYLDLSGNNLT   13 (22)
T ss_dssp             SEEEETSSEES
T ss_pred             cEEECCCCcCE
Confidence            34444444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.57  E-value=0.00065  Score=55.22  Aligned_cols=82  Identities=20%  Similarity=0.185  Sum_probs=56.7

Q ss_pred             ecCCCCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCccc--
Q 037769           71 CDNVTGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYE--  148 (200)
Q Consensus        71 c~~~~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~--  148 (200)
                      |... +.+++|.|  +-|.|+ .+.+   +..++.|++|+|..|.|...+.-.-+.++++|+.|.|..|...|.-+..  
T Consensus        37 c~kM-p~lEVLsL--SvNkIs-sL~p---l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR  109 (388)
T KOG2123|consen   37 CEKM-PLLEVLSL--SVNKIS-SLAP---LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYR  109 (388)
T ss_pred             HHhc-ccceeEEe--eccccc-cchh---HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHH
Confidence            4433 56888888  888877 4443   6778888888888888875311234567888888888888887766643  


Q ss_pred             ---ccCCCCCCEEe
Q 037769          149 ---MSHSSKLTHLD  159 (200)
Q Consensus       149 ---l~~l~~L~~L~  159 (200)
                         +..|++|+.||
T Consensus       110 ~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen  110 RKVLRVLPNLKKLD  123 (388)
T ss_pred             HHHHHHcccchhcc
Confidence               44566776664

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.29  E-value=0.0011  Score=53.89  Aligned_cols=101  Identities=19%  Similarity=0.053  Sum_probs=72.0

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcc--cccCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPY--EMSHSS  153 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~--~l~~l~  153 (200)
                      ..|+.|++  -+++|. .+.   ...+|+.|++|.|+-|.|+..   ..+..+++|+.|.|..|.|. .+-.  -+.+++
T Consensus        19 ~~vkKLNc--wg~~L~-DIs---ic~kMp~lEVLsLSvNkIssL---~pl~rCtrLkElYLRkN~I~-sldEL~YLknlp   88 (388)
T KOG2123|consen   19 ENVKKLNC--WGCGLD-DIS---ICEKMPLLEVLSLSVNKISSL---APLQRCTRLKELYLRKNCIE-SLDELEYLKNLP   88 (388)
T ss_pred             HHhhhhcc--cCCCcc-HHH---HHHhcccceeEEeeccccccc---hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCc
Confidence            46788888  777776 332   356789999999999999863   34778899999999999887 3332  367888


Q ss_pred             CCCEEeccCCcCCCCCCc--hhhhhcCCCCCCEEe
Q 037769          154 KLTHLDLSFCVLTIEHRT--FDLLASNLTKLSLLY  186 (200)
Q Consensus       154 ~L~~L~Ls~N~l~~~~~~--lp~~l~~l~~L~~L~  186 (200)
                      +|+.|-|..|.-.|..+.  --..+.-|++|+.||
T Consensus        89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            999999999987542221  012355677777765

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.04  E-value=0.037  Score=45.14  Aligned_cols=111  Identities=12%  Similarity=0.044  Sum_probs=59.5

Q ss_pred             CcEEEEEcccCCCCCeeccCCC--ccccCCCCCcEEEccCCCCCCCCCCh-------------hccCCCCCCEEeccCCc
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDN--STLFHLSHLQSLNLAYSNFLGSQLSP-------------EFGRLKELTYLNLSASN  140 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~--~~l~~l~~L~~L~L~~n~l~~~~~p~-------------~l~~l~~L~~L~Ls~n~  140 (200)
                      ++++.++|  +.|.+....|+.  ..+..-+.|++|.|++|.+... --.             ....-+.|++.....|+
T Consensus        92 p~l~~v~L--SDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~-aG~rigkal~~la~nKKaa~kp~Le~vicgrNR  168 (388)
T COG5238          92 PRLQKVDL--SDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPI-AGGRIGKALFHLAYNKKAADKPKLEVVICGRNR  168 (388)
T ss_pred             Ccceeeec--cccccCcccchHHHHHHhcCCCceeEEeecCCCCcc-chhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence            56777777  777766444430  0233446677777777766422 111             12234567777777776


Q ss_pred             CCCCCccc-----ccCCCCCCEEeccCCcCCCCCCc-----hhhhhcCCCCCCEEecccccCC
Q 037769          141 FGGLVPYE-----MSHSSKLTHLDLSFCVLTIEHRT-----FDLLASNLTKLSLLYLGATNMS  193 (200)
Q Consensus       141 l~~~~P~~-----l~~l~~L~~L~Ls~N~l~~~~~~-----lp~~l~~l~~L~~L~Ls~N~l~  193 (200)
                      +.. .|..     +..-..|+.+.+.+|.+.   +.     +-..+..+.+|++|||.+|-++
T Consensus       169 len-gs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         169 LEN-GSKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             hcc-CcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHHHhCcceeeeccccchh
Confidence            642 2211     111235666666666652   11     1123445667777777777665

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.52  E-value=0.022  Score=26.05  Aligned_cols=13  Identities=23%  Similarity=0.353  Sum_probs=5.3

Q ss_pred             CCCEEecccccCC
Q 037769          181 KLSLLYLGATNMS  193 (200)
Q Consensus       181 ~L~~L~Ls~N~l~  193 (200)
                      +|+.|++++|+|.
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            4555555555544

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.38  E-value=0.00047  Score=54.69  Aligned_cols=82  Identities=18%  Similarity=0.159  Sum_probs=65.1

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .+++.||+  +.|.+. .+..  .+..++.+..|+++.|.+..  +|..++.+..++.+++..|.++ ..|.+++.++.+
T Consensus        42 kr~tvld~--~s~r~v-n~~~--n~s~~t~~~rl~~sknq~~~--~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~  113 (326)
T KOG0473|consen   42 KRVTVLDL--SSNRLV-NLGK--NFSILTRLVRLDLSKNQIKF--LPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP  113 (326)
T ss_pred             ceeeeehh--hhhHHH-hhcc--chHHHHHHHHHhccHhhHhh--ChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence            57888888  888766 3344  46677788888888888875  6888888888888888888887 678888888888


Q ss_pred             CEEeccCCcC
Q 037769          156 THLDLSFCVL  165 (200)
Q Consensus       156 ~~L~Ls~N~l  165 (200)
                      +++++-.|.|
T Consensus       114 k~~e~k~~~~  123 (326)
T KOG0473|consen  114 KKNEQKKTEF  123 (326)
T ss_pred             chhhhccCcc
Confidence            8888888877

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=94.16  E-value=0.0026  Score=52.27  Aligned_cols=38  Identities=26%  Similarity=0.180  Sum_probs=19.7

Q ss_pred             CCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEeccccc
Q 037769          152 SSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATN  191 (200)
Q Consensus       152 l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~  191 (200)
                      +++|.+|||++|..-  ....-.+|.+++.|++|.++.+.
T Consensus       312 cp~l~~LDLSD~v~l--~~~~~~~~~kf~~L~~lSlsRCY  349 (419)
T KOG2120|consen  312 CPNLVHLDLSDSVML--KNDCFQEFFKFNYLQHLSLSRCY  349 (419)
T ss_pred             CCceeeecccccccc--CchHHHHHHhcchheeeehhhhc
Confidence            455566666654331  12333445556666666666653

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.96  E-value=0.0015  Score=51.89  Aligned_cols=88  Identities=13%  Similarity=0.112  Sum_probs=73.6

Q ss_pred             cccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcC
Q 037769           99 TLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASN  178 (200)
Q Consensus        99 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~  178 (200)
                      .+..+...+.||++.|.+..  +-..+..++.|..|+++.|.+. .+|..++.+..+..+++..|..    ...|..++.
T Consensus        37 ei~~~kr~tvld~~s~r~vn--~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~----~~~p~s~~k  109 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNRLVN--LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNH----SQQPKSQKK  109 (326)
T ss_pred             hhhccceeeeehhhhhHHHh--hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccch----hhCCccccc
Confidence            46677888899999998864  5566778889999999999988 7888888888888999988888    367888999


Q ss_pred             CCCCCEEecccccCC
Q 037769          179 LTKLSLLYLGATNMS  193 (200)
Q Consensus       179 l~~L~~L~Ls~N~l~  193 (200)
                      ++.++++++..|.+.
T Consensus       110 ~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  110 EPHPKKNEQKKTEFF  124 (326)
T ss_pred             cCCcchhhhccCcch
Confidence            999999999888764

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.86  E-value=0.04  Score=27.87  Aligned_cols=14  Identities=29%  Similarity=0.320  Sum_probs=7.6

Q ss_pred             CCCCEEecccccCC
Q 037769          180 TKLSLLYLGATNMS  193 (200)
Q Consensus       180 ~~L~~L~Ls~N~l~  193 (200)
                      ++|+.|+|++|+|.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            44555555555555

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.86  E-value=0.04  Score=27.87  Aligned_cols=14  Identities=29%  Similarity=0.320  Sum_probs=7.6

Q ss_pred             CCCCEEecccccCC
Q 037769          180 TKLSLLYLGATNMS  193 (200)
Q Consensus       180 ~~L~~L~Ls~N~l~  193 (200)
                      ++|+.|+|++|+|.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            44555555555555

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=93.75  E-value=0.0025  Score=52.42  Aligned_cols=88  Identities=26%  Similarity=0.325  Sum_probs=57.6

Q ss_pred             CCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCC-cCCCCCCchhhhhcCCCCCC
Q 037769          105 HLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFC-VLTIEHRTFDLLASNLTKLS  183 (200)
Q Consensus       105 ~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N-~l~~~~~~lp~~l~~l~~L~  183 (200)
                      .|++|||++..++...+-.-+..+++|+.|.|.++++...+-..+..-.+|+.|+|+.+ .|+  ...+...+..++.|.
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t--~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFT--ENALQLLLSSCSRLD  263 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccc--hhHHHHHHHhhhhHh
Confidence            47777887777764323334556777888888888887777677777777888877754 343  123344566777777


Q ss_pred             EEecccccCCc
Q 037769          184 LLYLGATNMSL  194 (200)
Q Consensus       184 ~L~Ls~N~l~g  194 (200)
                      .|+|+-+.++.
T Consensus       264 ~LNlsWc~l~~  274 (419)
T KOG2120|consen  264 ELNLSWCFLFT  274 (419)
T ss_pred             hcCchHhhccc
Confidence            77777665543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=93.37  E-value=0.092  Score=42.92  Aligned_cols=86  Identities=23%  Similarity=0.300  Sum_probs=42.9

Q ss_pred             CcEEEEEcccCCCCCeec----cCCCccccCCCCCcEEEccCCCCCCC--CCC-------hhccCCCCCCEEeccCCcCC
Q 037769           76 GNVIGLDLYSSCSWLVGT----IDDNSTLFHLSHLQSLNLAYSNFLGS--QLS-------PEFGRLKELTYLNLSASNFG  142 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~----~p~~~~l~~l~~L~~L~L~~n~l~~~--~~p-------~~l~~l~~L~~L~Ls~n~l~  142 (200)
                      ..++.++|  ++|.+...    +..  .+.+-.+|+..+++.-.....  .++       +.+-.+++|+..+||.|.|.
T Consensus        30 d~~~evdL--SGNtigtEA~e~l~~--~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          30 DELVEVDL--SGNTIGTEAMEELCN--VIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             cceeEEec--cCCcccHHHHHHHHH--HHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            35667777  77766421    222  334445555555554322110  011       22344566666666666665


Q ss_pred             CCCccc----ccCCCCCCEEeccCCcC
Q 037769          143 GLVPYE----MSHSSKLTHLDLSFCVL  165 (200)
Q Consensus       143 ~~~P~~----l~~l~~L~~L~Ls~N~l  165 (200)
                      -..|+.    ++.-+.|.+|.+++|.+
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCC
Confidence            544443    33445566666666655

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.32  E-value=0.38  Score=33.75  Aligned_cols=100  Identities=17%  Similarity=0.252  Sum_probs=52.8

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .+++.+.+  .. .+. .++.. .|.+++.|+.+.+..+ +... -...+..+..|+.+.+.. .+...-...+..+++|
T Consensus        12 ~~l~~i~~--~~-~~~-~I~~~-~F~~~~~l~~i~~~~~-~~~i-~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen   12 SNLESITF--PN-TIK-KIGEN-AFSNCTSLKSINFPNN-LTSI-GDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TT--EEEE--TS-T---EE-TT-TTTT-TT-SEEEESST-TSCE--TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             CCCCEEEE--CC-Cee-EeChh-hccccccccccccccc-cccc-ceeeeecccccccccccc-cccccccccccccccc
Confidence            36777888  64 444 33331 6777888999998775 5543 234567777889998875 4432223356678889


Q ss_pred             CEEeccCCcCCCCCCchh-hhhcCCCCCCEEeccc
Q 037769          156 THLDLSFCVLTIEHRTFD-LLASNLTKLSLLYLGA  189 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp-~~l~~l~~L~~L~Ls~  189 (200)
                      +.+++..+ ++    .++ ..+.+. .|+.+.+..
T Consensus        84 ~~i~~~~~-~~----~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   84 KNIDIPSN-IT----EIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             CEEEETTT--B----EEHTTTTTT--T--EEE-TT
T ss_pred             cccccCcc-cc----EEchhhhcCC-CceEEEECC
Confidence            99988765 41    232 346666 888888765

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=90.19  E-value=0.68  Score=32.43  Aligned_cols=84  Identities=15%  Similarity=0.219  Sum_probs=51.0

Q ss_pred             cccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchh-hhhc
Q 037769           99 TLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFD-LLAS  177 (200)
Q Consensus        99 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp-~~l~  177 (200)
                      .|.+.++|+.+.+.. .+... -...+..+++|+.+.+..+ +...-...+..+.+|+.+.+.. .+    ..++ ..|.
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I-~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~----~~i~~~~F~   78 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKI-GENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NL----KSIGDNAFS   78 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE--TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-----EE-TTTTT
T ss_pred             HHhCCCCCCEEEECC-CeeEe-Chhhccccccccccccccc-ccccceeeeecccccccccccc-cc----ccccccccc
Confidence            577788999999875 45543 3456788889999999885 5533234677888899999976 33    1232 3577


Q ss_pred             CCCCCCEEecccc
Q 037769          178 NLTKLSLLYLGAT  190 (200)
Q Consensus       178 ~l~~L~~L~Ls~N  190 (200)
                      .+++|+.+++..+
T Consensus        79 ~~~~l~~i~~~~~   91 (129)
T PF13306_consen   79 NCTNLKNIDIPSN   91 (129)
T ss_dssp             T-TTECEEEETTT
T ss_pred             ccccccccccCcc
Confidence            7899999999765

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=86.17  E-value=0.32  Score=23.93  Aligned_cols=15  Identities=20%  Similarity=0.231  Sum_probs=8.1

Q ss_pred             CCCCEEecccccCCc
Q 037769          180 TKLSLLYLGATNMSL  194 (200)
Q Consensus       180 ~~L~~L~Ls~N~l~g  194 (200)
                      ++|+.|+|++|+|++
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            456667777666653

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=83.51  E-value=1  Score=38.79  Aligned_cols=90  Identities=20%  Similarity=0.226  Sum_probs=51.0

Q ss_pred             cccCCCCCcEEEccCC-CCCCCCCC----hhccCCCCCCEEeccCCc-CCCCCccccc-CCCCCCEEeccCCc-CCCCCC
Q 037769           99 TLFHLSHLQSLNLAYS-NFLGSQLS----PEFGRLKELTYLNLSASN-FGGLVPYEMS-HSSKLTHLDLSFCV-LTIEHR  170 (200)
Q Consensus        99 ~l~~l~~L~~L~L~~n-~l~~~~~p----~~l~~l~~L~~L~Ls~n~-l~~~~P~~l~-~l~~L~~L~Ls~N~-l~~~~~  170 (200)
                      .....+.|+.|+++++ ..... .+    .....+++|+.|+++++. ++...-..+. .+++|+.|.+..+. ++  ..
T Consensus       209 ~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt--~~  285 (482)
T KOG1947|consen  209 LALKCPNLEELDLSGCCLLITL-SPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLT--DE  285 (482)
T ss_pred             HHhhCchhheecccCccccccc-chhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccc--hh
Confidence            3455677777777763 11111 11    223346777788887776 4432222222 26678887766665 44  23


Q ss_pred             chhhhhcCCCCCCEEeccccc
Q 037769          171 TFDLLASNLTKLSLLYLGATN  191 (200)
Q Consensus       171 ~lp~~l~~l~~L~~L~Ls~N~  191 (200)
                      .+-.....++.|++|+++.+.
T Consensus       286 gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  286 GLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             HHHHHHHhcCcccEEeeecCc
Confidence            444455667778888887654

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=83.22  E-value=0.96  Score=23.04  Aligned_cols=15  Identities=33%  Similarity=0.401  Sum_probs=10.0

Q ss_pred             CCCCCEEecccccCC
Q 037769          179 LTKLSLLYLGATNMS  193 (200)
Q Consensus       179 l~~L~~L~Ls~N~l~  193 (200)
                      +++|+.|+|+.|.|.
T Consensus         1 L~~L~~L~L~~NkI~   15 (26)
T smart00365        1 LTNLEELDLSQNKIK   15 (26)
T ss_pred             CCccCEEECCCCccc
Confidence            356777777777664

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=83.20  E-value=0.78  Score=23.39  Aligned_cols=16  Identities=19%  Similarity=0.316  Sum_probs=8.5

Q ss_pred             CCCEEecccccCCcCCC
Q 037769          181 KLSLLYLGATNMSLIKP  197 (200)
Q Consensus       181 ~L~~L~Ls~N~l~g~iP  197 (200)
                      +|+.|++++|+++ .+|
T Consensus         3 ~L~~L~vs~N~Lt-~LP   18 (26)
T smart00364        3 SLKELNVSNNQLT-SLP   18 (26)
T ss_pred             ccceeecCCCccc-cCc
Confidence            4555555555555 344

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	200
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-07

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 68/152 (44%), Gaps = 21/152 (13%)
Query: 20  CPPEQSLALLQFKNNTYVRSANYSFCNEENSSPKT-NSWTEGTDCC--SWDGVTCDNVTG 76
           C P+   ALLQ K              ++  +P T +SW   TDCC  +W GV CD  T 
Sbjct: 3   CNPQDKQALLQIK--------------KDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQ 48
Query: 77  --NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYL 134
              V  LDL  S   L       S+L +L +L  L +   N L   + P   +L +L YL
Sbjct: 49  TYRVNNLDL--SGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106
Query: 135 NLSASNFGGLVPYEMSHSSKLTHLDLSFCVLT 166
            ++ +N  G +P  +S    L  LD S+  L+
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALS 138

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	200
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-30
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-22
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  114 bits (287), Expect = 9e-30
 Identities = 44/188 (23%), Positives = 72/188 (38%), Gaps = 24/188 (12%)

Query: 16  TTHSCPPEQSLALLQFKNNTYVRSANYSFCNEENSSPKTNSWTEGTDCCSWDGVTCDNVT 75
           +       +   L+ FK+                       W+   + C++DGVTC +  
Sbjct: 5   SPSQSLYREIHQLISFKDVL-------------PDKNLLPDWSSNKNPCTFDGVTCRD-- 49

Query: 76  GNVIGLDLYSSC-SWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYL 134
             V  +DL S   +     +  +S+L  L+ L+SL L+ S+  GS     F     LT L
Sbjct: 50  DKVTSIDLSSKPLNVGFSAV--SSSLLSLTGLESLFLSNSHINGS--VSGFKCSASLTSL 105

Query: 135 NLSASNFGGLVP--YEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNM 192
           +LS ++  G V     +   S L  L++S   L    +    L   L  L +L L A ++
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL--KLNSLEVLDLSANSI 163

Query: 193 SLIKPFSL 200
           S       
Sbjct: 164 SGANVVGW 171

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 13/113 (11%)

Query: 81  LDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASN 140
           L + S    + G +D    +    +L+ L+++ +NF      P  G    L +L++S + 
Sbjct: 183 LAI-SGNK-ISGDVD----VSRCVNLEFLDVSSNNFSTG--IPFLGDCSALQHLDISGNK 234

Query: 141 FGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMS 193
             G     +S  ++L  L++S            +    L  L  L L     +
Sbjct: 235 LSGDFSRAISTCTELKLLNISSNQF-----VGPIPPLPLKSLQYLSLAENKFT 282

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.2 bits (126), Expect = 2e-08
 Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 7/107 (6%)

Query: 81  LDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASN 140
           LDL  +     G +         S L+SL L+ +NF G        +++ L  L+LS + 
Sbjct: 299 LDLSGN--HFYGAV--PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354

Query: 141 FGGLVPYEMSH-SSKLTHLDLSFCVLT--IEHRTFDLLASNLTKLSL 184
           F G +P  +++ S+ L  LDLS    +  I         + L +L L
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.1 bits (123), Expect = 6e-08
 Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 8/96 (8%)

Query: 101 FHLSHLQSLNLAYSNFLGSQLSPE-FGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLD 159
             L  LQ L+L   N    ++     G    LT L+LS ++F G VP      S L  L 
Sbjct: 266 LPLKSLQYLSL-AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 324

Query: 160 LSFCVLT--IEHRTFDLLASNLTKLSLLYLGATNMS 193
           LS    +  +   T       +  L +L L     S
Sbjct: 325 LSSNNFSGELPMDTL----LKMRGLKVLDLSFNEFS 356

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.7 bits (122), Expect = 8e-08
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query: 73  NVTGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELT 132
           N++ +++ LDL SS +   G I  N      + LQ L L  +N    ++ P      EL 
Sbjct: 365 NLSASLLTLDL-SSNN-FSGPILPNLCQNPKNTLQELYL-QNNGFTGKIPPTLSNCSELV 421

Query: 133 YLNLSASNFGGLVPYEMSHSSKLTHLDLS 161
            L+LS +   G +P  +   SKL  L L 
Sbjct: 422 SLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 16/102 (15%)

Query: 98  STLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTH 157
            TL + S L SL+L+++   G+ +    G L +L  L L  +   G +P E+ +   L  
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGT-IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470

Query: 158 LDLSFCVLT------IEHRTFDLLASNLTKLSLLYLGATNMS 193
           L L F  LT      +         SN T L+ + L    ++
Sbjct: 471 LILDFNDLTGEIPSGL---------SNCTNLNWISLSNNRLT 503

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 3/81 (3%)

Query: 81  LDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASN 140
                +     G       L  LS     N+  S   G   SP F     + +L++S + 
Sbjct: 587 CHGAGNLLEFQGIRS--EQLNRLSTRNPCNIT-SRVYGGHTSPTFDNNGSMMFLDMSYNM 643

Query: 141 FGGLVPYEMSHSSKLTHLDLS 161
             G +P E+     L  L+L 
Sbjct: 644 LSGYIPKEIGSMPYLFILNLG 664

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 5/87 (5%)

Query: 76  GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLN 135
           G+++ LD+  S + L G I     +  + +L  LNL   N +   +  E G L+ L  L+
Sbjct: 632 GSMMFLDM--SYNMLSGYIP--KEIGSMPYLFILNLG-HNDISGSIPDEVGDLRGLNILD 686

Query: 136 LSASNFGGLVPYEMSHSSKLTHLDLSF 162
           LS++   G +P  MS  + LT +DLS 
Sbjct: 687 LSSNKLDGRIPQAMSALTMLTEIDLSN 713

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.1 bits (105), Expect = 1e-05
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 98  STLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTH 157
           S L + ++L  ++L+ +   G  +    GRL+ L  L LS ++F G +P E+     L  
Sbjct: 484 SGLSNCTNLNWISLSNNRLTGE-IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542

Query: 158 LDLS 161
           LDL+
Sbjct: 543 LDLN 546

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 90  LVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEM 149
           L G I     L ++  L++L L +++  G  +         L +++LS +   G +P  +
Sbjct: 454 LEGEI--PQELMYVKTLETLILDFNDLTGE-IPSGLSNCTNLNWISLSNNRLTGEIPKWI 510

Query: 150 SHSSKLTHLDLS 161
                L  L LS
Sbjct: 511 GRLENLAILKLS 522

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.6 bits (101), Expect = 4e-05
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 98  STLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTH 157
            T  +   +  L+++  N L   +  E G +  L  LNL  ++  G +P E+     L  
Sbjct: 626 PTFDNNGSMMFLDMS-YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI 684

Query: 158 LDLSF 162
           LDLS 
Sbjct: 685 LDLSS 689

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 91.1 bits (227), Expect = 2e-22
 Identities = 49/179 (27%), Positives = 70/179 (39%), Gaps = 34/179 (18%)

Query: 20  CPPEQSLALLQFKNNTYVRSANYSFCNEENSSPKTNSWTEGTDCC--SWDGVTCDNVT-- 75
           C P+   ALLQ K +               +    +SW   TDCC  +W GV CD  T  
Sbjct: 3   CNPQDKQALLQIKKDL-------------GNPTTLSSWLPTTDCCNRTWLGVLCDTDTQT 49

Query: 76  GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLN 135
             V  LDL      L       S+L +L +L  L +   N L   + P   +L +L YL 
Sbjct: 50  YRVNNLDLSGLN--LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 136 LSASNFGGLVPYEMSHSSKLTHLDLSFCVLT------IEHRTFDLLASNLTKLSLLYLG 188
           ++ +N  G +P  +S    L  LD S+  L+      I         S+L  L  +   
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI---------SSLPNLVGITFD 157

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 51.0 bits (123), Expect = 5e-08
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 98  STLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTH 157
                  + Q ++LA ++        + G  K L  L+L  +   G +P  ++    L  
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFD--LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS 272

Query: 158 LDLSF 162
           L++SF
Sbjct: 273 LNVSF 277

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 44.4 bits (106), Expect = 8e-06
 Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 98  STLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKEL-TYLNLSASNFGGLVPYEMSHSSKLT 156
            ++  L +L  +     N +   +   +G   +L T + +S +   G +P   ++ + L 
Sbjct: 143 PSISSLPNLVGITF-DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LA 200

Query: 157 HLDLSFCVLT 166
            +DLS  +L 
Sbjct: 201 FVDLSRNMLE 210

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 3/70 (4%)

Query: 98  STLFHLSHL-QSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT 156
            +    S L  S+ ++  N L  ++ P F  L  L +++LS +   G             
Sbjct: 167 DSYGSFSKLFTSMTISR-NRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQ 224

Query: 157 HLDLSFCVLT 166
            + L+   L 
Sbjct: 225 KIHLAKNSLA 234

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 61.6 bits (150), Expect = 1e-11
 Identities = 20/149 (13%), Positives = 45/149 (30%), Gaps = 8/149 (5%)

Query: 49  NSSPKTNSWTEGTDCCSW---DGVTCDNVTGNVIGLDLYSSCSWLVGTIDDNSTLFHLSH 105
             +    +W    +   W    GV+ ++  G V GL L        G + D   +  L+ 
Sbjct: 52  FGTQPGANWNFNKELDMWGAQPGVSLNS-NGRVTGLSLEGFG--ASGRVPDA--IGQLTE 106

Query: 106 LQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVL 165
           L+ L L       ++       +                    + +  +    DL    +
Sbjct: 107 LEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCI 166

Query: 166 TIEHRTFDLLASNLTKLSLLYLGATNMSL 194
             + +   +  S+   L    +G  + ++
Sbjct: 167 NSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 51.2 bits (123), Expect = 5e-08
 Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 3/88 (3%)

Query: 98  STLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTH 157
           +       +Q + + Y+N     +     ++K+L  L    +   G +P       KL  
Sbjct: 299 ADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLAS 357

Query: 158 LDLSFCVLT-IEHRTFDLLASNLTKLSL 184
           L+L++  +T I           +  LS 
Sbjct: 358 LNLAYNQITEIPANFCGFT-EQVENLSF 384

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 50.0 bits (120), Expect = 1e-07
 Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 4/95 (4%)

Query: 93  TIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHS 152
           T    ++L  +  L  L   Y+   G    P FG   +L  LNL+ +    +       +
Sbjct: 319 TFPVETSLQKMKKLGMLECLYNQLEG--KLPAFGSEIKLASLNLAYNQITEIPANFCGFT 376

Query: 153 SKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYL 187
            ++ +L  +   L      FD    +++ +S +  
Sbjct: 377 EQVENLSFAHNKLKYIPNIFDA--KSVSVMSAIDF 409

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 14/114 (12%), Positives = 37/114 (32%), Gaps = 23/114 (20%)

Query: 98  STLFHLSHLQSLNLAYSNFLGSQ------------------LSPEFGRLKELTYLNLSAS 139
             +  L+ L+   +  S F+                        ++  LK+LT + +   
Sbjct: 200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC 259

Query: 140 NFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLL-----ASNLTKLSLLYLG 188
                +P  +    ++  ++++        +  D       A    K+ ++Y+G
Sbjct: 260 PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 18/106 (16%), Positives = 38/106 (35%), Gaps = 10/106 (9%)

Query: 93  TIDDNSTLFHLSHLQSLNLAYSNFLG------SQLSPEFGRLKELTYLNLSASNFGGLVP 146
            I +      +S + +++ +Y+            L P   +   ++ +NLS +       
Sbjct: 391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK 450

Query: 147 YEMSHSSKLTHLDLSFCVLT-IEHRTFDLLA---SNLTKLSLLYLG 188
              S  S L+ ++L   +LT I   +         N   L+ + L 
Sbjct: 451 ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 13/99 (13%), Positives = 29/99 (29%), Gaps = 11/99 (11%)

Query: 97  NSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGL--------VPYE 148
           +    +L  L  + +     L   L      L E+  +N++ +                +
Sbjct: 242 DLKWDNLKDLTDVEVYNCPNLTK-LPTFLKALPEMQLINVACNRGISGEQLKDDWQALAD 300

Query: 149 MSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYL 187
                K+  + + +  L        L    + KL +L  
Sbjct: 301 APVGEKIQIIYIGYNNLKTFPVETSL--QKMKKLGMLEC 337

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.3 bits (105), Expect = 9e-06
 Identities = 16/99 (16%), Positives = 36/99 (36%), Gaps = 12/99 (12%)

Query: 98  STLFHLSHLQSLNLAYSNFLGSQLSP-------EFGRLKELTYLNLSASNFGGL-VPYEM 149
           + L  L  +Q +N+A +  +  +          +    +++  + +  +N     V   +
Sbjct: 267 TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL 326

Query: 150 SHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLG 188
               KL  L+  +  L  +   F     +  KL+ L L 
Sbjct: 327 QKMKKLGMLECLYNQLEGKLPAF----GSEIKLASLNLA 361

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 14/101 (13%), Positives = 32/101 (31%), Gaps = 14/101 (13%)

Query: 93  TIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYL------NLSASNFGGLVP 146
            + D+     L +L  ++L+Y N   S+   +      L         +   +      P
Sbjct: 502 KLSDDFRATTLPYLVGIDLSY-NSF-SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWP 559

Query: 147 YEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYL 187
             ++    LT L +    +        +       +S+L +
Sbjct: 560 EGITLCPSLTQLQIGSNDIR------KVNEKITPNISVLDI 594

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 14/96 (14%), Positives = 27/96 (28%), Gaps = 10/96 (10%)

Query: 98  STLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTH 157
            +         +    +N   + +S    RL +L    +  S F      E   +    +
Sbjct: 177 KSSRITLKDTQIGQLSNNI--TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY 234

Query: 158 LDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMS 193
                       +T DL   NL  L+ + +      
Sbjct: 235 AQQY--------KTEDLKWDNLKDLTDVEVYNCPNL 262

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 17/97 (17%), Positives = 30/97 (30%), Gaps = 11/97 (11%)

Query: 98  STLFHLSHLQSLNLAYSNF------LGSQLSPEFGRLKELTYLNLSASNFGGLVP-YEMS 150
                 S L S+NL  +             +  F     LT ++L  +    L   +  +
Sbjct: 451 ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRAT 510

Query: 151 HSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYL 187
               L  +DLS+   +     F     N + L    +
Sbjct: 511 TLPYLVGIDLSYNSFS----KFPTQPLNSSTLKGFGI 543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 4/95 (4%)

Query: 97  NSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT 156
           N    +   L S++L ++             L  L  ++LS ++F    P +  +SS L 
Sbjct: 481 NENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKF-PTQPLNSSTLK 539

Query: 157 HLDLSFCVLTIEHRTFDLLA---SNLTKLSLLYLG 188
              +        +RT        +    L+ L +G
Sbjct: 540 GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.2 bits (138), Expect = 5e-10
 Identities = 23/168 (13%), Positives = 46/168 (27%), Gaps = 7/168 (4%)

Query: 26  LALLQFKNNTYVRSANYSFCNEENSSPKTNSWTEGTDCCSWDGVTCDNVT--GNVIGLDL 83
            AL         ++  Y      N++  + +W    +   W      ++   G V GL L
Sbjct: 272 KALKAIWEALDGKNWRYY-SGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSL 330

Query: 84  YSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGG 143
             +     G + D   +  L+ L+ L+    +   S        L               
Sbjct: 331 --AGFGAKGRVPD--AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMH 386

Query: 144 LVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATN 191
                + +  +L   DL    +        +   +   L    +G   
Sbjct: 387 YKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLT 434

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.6 bits (126), Expect = 2e-08
 Identities = 17/111 (15%), Positives = 34/111 (30%), Gaps = 12/111 (10%)

Query: 98  STLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGL---------VPYE 148
            +  +L  L  + L     +   L      L EL  LN++ +              +  +
Sbjct: 485 LSWSNLKDLTDVELYNCPNMTQ-LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADD 543

Query: 149 MSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFS 199
                K+    + +  L     +  L    + KL LL      +  ++ F 
Sbjct: 544 EDTGPKIQIFYMGYNNLEEFPASASL--QKMVKLGLLDCVHNKVRHLEAFG 592

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.9 bits (114), Expect = 6e-07
 Identities = 16/124 (12%), Positives = 33/124 (26%), Gaps = 24/124 (19%)

Query: 98  STLFHLSHLQSLNLAY------------------SNFLGSQLSPEFGRLKELTYLNLSAS 139
             +  L+ LQ +  A                              +  LK+LT + L   
Sbjct: 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC 501

Query: 140 NFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLAS------NLTKLSLLYLGATNMS 193
                +P  +    +L  L+++        +                K+ + Y+G  N+ 
Sbjct: 502 PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561

Query: 194 LIKP 197
               
Sbjct: 562 EFPA 565

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 14/96 (14%), Positives = 33/96 (34%), Gaps = 5/96 (5%)

Query: 93  TIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHS 152
               +++L  +  L  L+  ++      L   FG   +LT L L  +    +     + +
Sbjct: 562 EFPASASLQKMVKLGLLDCVHNKV--RHL-EAFGTNVKLTDLKLDYNQIEEIPEDFCAFT 618

Query: 153 SKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLG 188
            ++  L  S   L      F+    ++  +  +   
Sbjct: 619 DQVEGLGFSHNKLKYIPNIFNA--KSVYVMGSVDFS 652

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 12/101 (11%), Positives = 34/101 (33%), Gaps = 14/101 (13%)

Query: 93  TIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNL------SASNFGGLVP 146
           ++ D+     L +L +++++Y+ F  S    +     +L    +        +      P
Sbjct: 742 SLSDDFRATTLPYLSNMDVSYNCF--SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP 799

Query: 147 YEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYL 187
             ++    L  L +    +        +      +L +L +
Sbjct: 800 TGITTCPSLIQLQIGSNDIR------KVDEKLTPQLYILDI 834

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 18/97 (18%), Positives = 38/97 (39%), Gaps = 8/97 (8%)

Query: 97  NSTLFHLSHLQSLNLAYSNFLGSQLSPE--FGRLKELTYLNLSASNFGGLVPYEMSHSSK 154
           +    +   L +++L + N L + LS +     L  L+ +++S + F    P +  +SS+
Sbjct: 721 DGNYKNTYLLTTIDLRF-NKL-TSLSDDFRATTLPYLSNMDVSYNCFSSF-PTQPLNSSQ 777

Query: 155 LTHLDLSFCVLTIEHRTFDLLA---SNLTKLSLLYLG 188
           L    +        +R         +    L  L +G
Sbjct: 778 LKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG 814

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 14/88 (15%), Positives = 26/88 (29%), Gaps = 4/88 (4%)

Query: 98  STLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTH 157
                   +Q   + Y+N      S    ++ +L  L+   +    L       + KLT 
Sbjct: 542 DDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL--EAFGTNVKLTD 599

Query: 158 LDLSFCVLT-IEHRTFDLLASNLTKLSL 184
           L L +  +  I           +  L  
Sbjct: 600 LKLDYNQIEEIPEDFCAFT-DQVEGLGF 626

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 10/105 (9%)

Query: 93  TIDDNSTLFHLSHLQSLNLAYSNFLGSQ-----LSPEFGRLKELTYLNLSASNFGGLVPY 147
            I +      +  + S++ +Y N +GS+      S +  +    + + LS +        
Sbjct: 633 YIPNIFNAKSVYVMGSVDFSY-NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTE 691

Query: 148 EMSHSSKLTHLDLSFCVLT-IEHRTFDLLA---SNLTKLSLLYLG 188
             +  S ++ + LS  ++T I   +         N   L+ + L 
Sbjct: 692 LFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLR 736

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 39.9 bits (93), Expect = 4e-04
 Identities = 12/98 (12%), Positives = 32/98 (32%), Gaps = 13/98 (13%)

Query: 98  STLFHLSHLQSLNLAY------SNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSH 151
                 S + ++ L+                  +     LT ++L  +    L   +   
Sbjct: 691 ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSL-SDDFRA 749

Query: 152 S--SKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYL 187
           +    L+++D+S+   +    +F     N ++L    +
Sbjct: 750 TTLPYLSNMDVSYNCFS----SFPTQPLNSSQLKAFGI 783

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 39.5 bits (92), Expect = 5e-04
 Identities = 19/104 (18%), Positives = 32/104 (30%), Gaps = 11/104 (10%)

Query: 97  NSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT 156
             +   L   Q  NL  +N +   +S    RL +L  +  + S F           +   
Sbjct: 419 KDSRISLKDTQIGNL--TNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSD 475

Query: 157 HLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL 200
           +          E  ++    SNL  L+ + L         P  L
Sbjct: 476 YAKQ----YENEELSW----SNLKDLTDVELYNCPNMTQLPDFL 511

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.8 bits (135), Expect = 1e-09
 Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 7/107 (6%)

Query: 96  DNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155
           ++     LSHL +L L   N + S     F  L  L  L    +N   L  + + H   L
Sbjct: 68  EDGAYQSLSHLSTLILTG-NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 156 THLDLSFCVLT--IEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL 200
             L+++  ++        F    SNLT L  L L +  +  I    L
Sbjct: 127 KELNVAHNLIQSFKLPEYF----SNLTNLEHLDLSSNKIQSIYCTDL 169

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.6 bits (124), Expect = 3e-08
 Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 6/93 (6%)

Query: 97  NSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT 156
           + + F    LQ L+L+       +    +  L  L+ L L+ +    L     S  S L 
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103

Query: 157 HLDLSFCVLT-IEHRTFDLLASNLTKLSLLYLG 188
            L      L  +E+        +L  L  L + 
Sbjct: 104 KLVAVETNLASLENFPI----GHLKTLKELNVA 132

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 23/89 (25%), Positives = 36/89 (40%)

Query: 96  DNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155
            N     LS L+ L +A ++F  + L   F  L+ LT+L+LS      L P   +  S L
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496

Query: 156 THLDLSFCVLTIEHRTFDLLASNLTKLSL 184
             L++S               ++L  L  
Sbjct: 497 QVLNMSHNNFFSLDTFPYKCLNSLQVLDY 525

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 6/98 (6%)

Query: 104 SHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFC 163
              ++L+L++ N L    S  F    EL  L+LS      +        S L+ L L+  
Sbjct: 28  FSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 164 VLT-IEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL 200
            +  +    F    S L+ L  L    TN++ ++ F +
Sbjct: 87  PIQSLALGAF----SGLSSLQKLVAVETNLASLENFPI 120

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 48.9 bits (117), Expect = 3e-07
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 7/94 (7%)

Query: 96  DNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155
           +N  + HL  L+ LN+A++     +L   F  L  L +L+LS++    +   ++    ++
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175

Query: 156 T----HLDLSFCVLT-IEHRTFDLLASNLTKLSL 184
                 LDLS   +  I+   F  +   L KL+L
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKEI--RLHKLTL 207

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 10/109 (9%)

Query: 81  LDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASN 140
           LDL  +     G    + + F  + L+ L+L+++      +S  F  L++L +L+   SN
Sbjct: 352 LDLSRNGLSFKGCC--SQSDFGTTSLKYLDLSFNGV--ITMSSNFLGLEQLEHLDFQHSN 407

Query: 141 FGGLVPYEM-SHSSKLTHLDLSFCVLT-IEHRTFDLLASNLTKLSLLYL 187
              +  + +      L +LD+S        +  F    + L+ L +L +
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF----NGLSSLEVLKM 452

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 3/89 (3%)

Query: 98  STLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTH 157
           S    L  L+ L+  +SN         F  L+ L YL++S ++         +  S L  
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449

Query: 158 LDLSFCVLT--IEHRTFDLLASNLTKLSL 184
           L ++            F  L  NLT L L
Sbjct: 450 LKMAGNSFQENFLPDIFTEL-RNLTFLDL 477

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 20/106 (18%), Positives = 34/106 (32%), Gaps = 8/106 (7%)

Query: 98  STLFHLSHLQSLNLAYSNFLGSQLSPE-FGRLKELTYLNLSASNFGGLVPYEMSHSSKLT 156
            +   L  L+ L+L+ +         +       L YL+LS +    +         +L 
Sbjct: 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLE 399

Query: 157 HLDLSFCVLT--IEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL 200
           HLD     L    E   F     +L  L  L +  T+  +      
Sbjct: 400 HLDFQHSNLKQMSEFSVF----LSLRNLIYLDISHTHTRVAFNGIF 441

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 39.6 bits (93), Expect = 4e-04
 Identities = 21/109 (19%), Positives = 30/109 (27%), Gaps = 6/109 (5%)

Query: 97  NSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT 156
               F    L  L L  +    + +      L  L    L    F      E    S L 
Sbjct: 193 QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252

Query: 157 HL------DLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFS 199
            L      +     L         L + LT +S   L +  +  +K FS
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS 301

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 38.5 bits (90), Expect = 9e-04
 Identities = 28/125 (22%), Positives = 46/125 (36%), Gaps = 21/125 (16%)

Query: 93  TIDDNSTLFHLSHLQSLNLAYSNFLGSQLS---------------PEFGRLKELTYLNLS 137
            + D S  F   HL+ +N  +  F   +L                     L  L +L+LS
Sbjct: 296 RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLS 355

Query: 138 AS--NFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLI 195
            +  +F G        ++ L +LDLSF  +      F      L +L  L    +N+  +
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF----LGLEQLEHLDFQHSNLKQM 411

Query: 196 KPFSL 200
             FS+
Sbjct: 412 SEFSV 416

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 25/106 (23%), Positives = 37/106 (34%), Gaps = 6/106 (5%)

Query: 96  DNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155
           +      L  L+ LNL + N L       F     LT L+L +++   +          L
Sbjct: 65  EPELCQKLPMLKVLNLQH-NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123

Query: 156 THLDLSFCVLT-IEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL 200
             LDLS   L+  +  T       L  L  L L    +  +K   L
Sbjct: 124 ITLDLSHNGLSSTKLGTQ----VQLENLQELLLSNNKIQALKSEEL 165

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 6/105 (5%)

Query: 97  NSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT 156
            +     S L SL++ + N +         +L  L  LNL  +    L     +  + LT
Sbjct: 42  AANFTRYSQLTSLDVGF-NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT 100

Query: 157 HLDLSFCVLT-IEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL 200
            L L    +  I++  F         L  L L    +S  K  + 
Sbjct: 101 ELHLMSNSIQKIKNNPF----VKQKNLITLDLSHNGLSSTKLGTQ 141

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.4 bits (121), Expect = 9e-08
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 6/99 (6%)

Query: 103 LSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSF 162
            +++  LNL + N L    +  F R  +LT L++  +    L P        L  L+L  
Sbjct: 24  PTNITVLNLTH-NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82

Query: 163 CVLT-IEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL 200
             L+ +  +TF    +  T L+ L+L + ++  IK    
Sbjct: 83  NELSQLSDKTF----AFCTNLTELHLMSNSIQKIKNNPF 117

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 20/105 (19%), Positives = 33/105 (31%), Gaps = 1/105 (0%)

Query: 97  NSTLFHLSHLQSLNLAYSNFLGSQLSP-EFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155
             T   L +LQ L L+ +     +    +      L  L LS++      P       +L
Sbjct: 138 LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRL 197

Query: 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL 200
             L L+   L         L    T +  L L  + +S     + 
Sbjct: 198 FGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.7 bits (114), Expect = 7e-07
 Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 1/104 (0%)

Query: 97  NSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT 156
           +     L HL+ L+L  +         E+  L+ +  + LS + +  L     +    L 
Sbjct: 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQ 457

Query: 157 HLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL 200
            L L    L     +       L  L++L L   N++ I    L
Sbjct: 458 RLMLRRVALKNVDSSPSPF-QPLRNLTILDLSNNNIANINDDML 500

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.6 bits (106), Expect = 8e-06
 Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 9/114 (7%)

Query: 96  DNSTLFHLSHLQSLNLAYS--------NFLGSQLSPEFGRLKELTYLNLSASNFGGLVPY 147
            + +L  L +++ LNL  S          L       F  LK L +LN+  ++  G+   
Sbjct: 288 FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN 347

Query: 148 EMSHSSKLTHLDLSFCVLTIEHRTFDLLAS-NLTKLSLLYLGATNMSLIKPFSL 200
             +    L +L LS    ++   T +   S   + L +L L    +S I+  + 
Sbjct: 348 MFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF 401

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.6 bits (106), Expect = 9e-06
 Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 7/109 (6%)

Query: 81  LDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASN 140
           L L +S + L    ++       S L  LNL   N +    S  F  L  L  L+L  + 
Sbjct: 358 LSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK-NKISKIESDAFSWLGHLEVLDLGLNE 416

Query: 141 FGGLVPYEM-SHSSKLTHLDLSFCVLT-IEHRTFDLLASNLTKLSLLYL 187
            G  +  +       +  + LS+     +   +F    + +  L  L L
Sbjct: 417 IGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF----ALVPSLQRLML 461

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.6 bits (106), Expect = 9e-06
 Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 7/117 (5%)

Query: 90  LVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEM 149
           L  T +        ++L  L+L+Y N L    +  F  L +L Y  L  +N   L  + +
Sbjct: 234 LSTTSNTTFLGLKWTNLTMLDLSY-NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 292

Query: 150 SHSSKLTHLDLSFCVLTIEHRTFDLLA------SNLTKLSLLYLGATNMSLIKPFSL 200
                + +L+L             L          L  L  L +   ++  IK    
Sbjct: 293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF 349

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 24/101 (23%), Positives = 35/101 (34%), Gaps = 6/101 (5%)

Query: 93  TIDDNSTLFHLSHLQSLNLAYSNFLGSQLSP-EFGRLKELTYLNLSASNFGGLVPYEMSH 151
                ++   +  LQ L L          SP  F  L+ LT L+LS +N   +    +  
Sbjct: 443 LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG 502

Query: 152 SSKLTHLDLSFCVLT-IEHRTFDLLA----SNLTKLSLLYL 187
             KL  LDL    L  +               L+ L +L L
Sbjct: 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL 543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 7/96 (7%)

Query: 96  DNSTLFHLSHLQSLNLAYSNF-------LGSQLSPEFGRLKELTYLNLSASNFGGLVPYE 148
           ++  L  L  L+ L+L ++N                   L  L  LNL ++ F  +    
Sbjct: 496 NDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV 555

Query: 149 MSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSL 184
                +L  +DL    L     +      +L  L+L
Sbjct: 556 FKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNL 591

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 9/110 (8%)

Query: 96  DNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGR---LKELTYLNLSASNFGGLVPYEMSHS 152
            ++    L +L+ L+L+ S      L+ E         L  LNL+ +    +     S  
Sbjct: 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL 404

Query: 153 SKLTHLDLSFCVLT--IEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL 200
             L  LDL    +   +  + +      L  +  +YL       +   S 
Sbjct: 405 GHLEVLDLGLNEIGQELTGQEW----RGLENIFEIYLSYNKYLQLTRNSF 450

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 4/100 (4%)

Query: 96  DNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155
            ++T    S LQ L+L  ++   S+L      L  L  L LSA+ F  L     S+   L
Sbjct: 270 SSNTFHCFSGLQELDLTATHL--SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSL 327

Query: 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLI 195
           THL +      +E  T  L   NL  L  L L   ++   
Sbjct: 328 THLSIKGNTKRLELGTGCL--ENLENLRELDLSHDDIETS 365

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 16/106 (15%), Positives = 29/106 (27%), Gaps = 6/106 (5%)

Query: 96  DNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155
              T      L +L L   N L           K L +L    +    +    + +   L
Sbjct: 73  HEDTFQSQHRLDTLVLTA-NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131

Query: 156 THLDLSFCVLT-IEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL 200
             L L    ++ I+            KL +L      +  +    +
Sbjct: 132 ESLYLGSNHISSIKLPKG----FPTEKLKVLDFQNNAIHYLSKEDM 173

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.7 bits (114), Expect = 8e-07
 Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 6/121 (4%)

Query: 81  LDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSP-EFGRLKELTYLNLSAS 139
           L +  +       +     L +L +L+ L+L++ +   S     +   L  L  LNLS +
Sbjct: 330 LSIKGNT--KRLELGTG-CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386

Query: 140 NFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFS 199
               L         +L  LDL+F  L ++         NL  L +L L  + + +     
Sbjct: 387 EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF--QNLHLLKVLNLSHSLLDISSEQL 444

Query: 200 L 200
            
Sbjct: 445 F 445

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.3 bits (113), Expect = 9e-07
 Identities = 20/91 (21%), Positives = 28/91 (30%)

Query: 97  NSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT 156
                    L+ L+LA++          F  L  L  LNLS S               L 
Sbjct: 393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ 452

Query: 157 HLDLSFCVLTIEHRTFDLLASNLTKLSLLYL 187
           HL+L        +         L +L +L L
Sbjct: 453 HLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 8/103 (7%)

Query: 97  NSTLFHLSHLQSLNLAYSNFLGSQLSPE-FGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155
           N+T   L +L  L+L         +  + F     L  L L+A+    +    +S    L
Sbjct: 50  NTTFSRLINLTFLDLTRCQI--YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKAL 107

Query: 156 THLDLSFCVLT-IEHRTFDLLASNLTKLSLLYLGATNMSLIKP 197
            HL      ++ I+         N   L  LYLG+ ++S IK 
Sbjct: 108 KHLFFIQTGISSIDFIPL----HNQKTLESLYLGSNHISSIKL 146

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 6/99 (6%)

Query: 103 LSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSF 162
            +  + L  ++ N L +  +  F RL  LT+L+L+      +         +L  L L+ 
Sbjct: 32  PNSTECLEFSF-NVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90

Query: 163 CVLT-IEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL 200
             L  +         S    L  L+   T +S I    L
Sbjct: 91  NPLIFMAETAL----SGPKALKHLFFIQTGISSIDFIPL 125

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.6 bits (106), Expect = 9e-06
 Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 3/105 (2%)

Query: 96  DNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155
           D   L +   L+SL L   N + S   P+    ++L  L+   +    L   +MS   + 
Sbjct: 121 DFIPLHNQKTLESLYLGS-NHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQA 179

Query: 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL 200
           T+L L+     I     +  A +      L  G T   L+    L
Sbjct: 180 TNLSLNLNGNDIAG--IEPGAFDSAVFQSLNFGGTQNLLVIFKGL 222

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 23/94 (24%), Positives = 34/94 (36%), Gaps = 8/94 (8%)

Query: 96  DNSTLFHLSHLQSLNLAYSNF--LGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSS 153
                  L  LQ LNL  ++F     Q +     L  L  L LS  +   +  +  +   
Sbjct: 441 SEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLK 500

Query: 154 KLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYL 187
            + H+DLS   LT            L+ L  +YL
Sbjct: 501 MMNHVDLSHNRLTS------SSIEALSHLKGIYL 528

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 19/112 (16%), Positives = 29/112 (25%), Gaps = 5/112 (4%)

Query: 90  LVGTIDDNSTLFHLSHLQSLNLAYSNFLG-SQLSPEFGRLKELTYLNLSASNFGGLVPYE 148
            +  I        +  L        +    S    E      +  +NL    F  +    
Sbjct: 214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT 273

Query: 149 MSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL 200
               S L  LDL+   L+            L+ L  L L A     +   S 
Sbjct: 274 FHCFSGLQELDLTATHLSELPSGL----VGLSTLKKLVLSANKFENLCQISA 321

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 38.5 bits (90), Expect = 8e-04
 Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 3/104 (2%)

Query: 81  LDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASN 140
           L+L     +  G I   ++L  L  L+ L L++   L S     F  LK + +++LS + 
Sbjct: 454 LNL-QGNHFPKGNIQKTNSLQTLGRLEILVLSF-CDLSSIDQHAFTSLKMMNHVDLSHNR 511

Query: 141 FGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSL 184
                   +SH   +  L+L+   ++I   +   + S    ++L
Sbjct: 512 LTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINL 554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 3/105 (2%)

Query: 96  DNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155
           ++     L HL +L L   N + S     F  L  L  L    +    L  + +     L
Sbjct: 72  EDKAWHGLHHLSNLILTG-NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL 130

Query: 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL 200
             L+++   +           SNLT L  + L    +  I    L
Sbjct: 131 KKLNVAHNFIH--SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL 173

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.3 bits (113), Expect = 9e-07
 Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 5/109 (4%)

Query: 93  TIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHS 152
            ID +     L+ L +L +A ++F  + LS  F     LT+L+LS      +        
Sbjct: 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496

Query: 153 SKLTHLDLSFCVLT-IEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL 200
            +L  L++S   L  ++   +    + L  LS L      +   K    
Sbjct: 497 HRLQLLNMSHNNLLFLDSSHY----NQLYSLSTLDCSFNRIETSKGILQ 541

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 3/89 (3%)

Query: 97  NSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT 156
           + +  + S LQ L+L+    + +     +  L  L+ L L+ +      P   S  + L 
Sbjct: 49  SYSFSNFSELQWLDLSR-CEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLE 107

Query: 157 HLDLSFCVLT-IEHRTFDLLASNLTKLSL 184
           +L      L  +E      L   L KL++
Sbjct: 108 NLVAVETKLASLESFPIGQL-ITLKKLNV 135

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 3/89 (3%)

Query: 98  STLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTH 157
           +    L  LQ L+  +S          F  L++L YL++S +N            + L  
Sbjct: 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT 452

Query: 158 LDLSFCVLT--IEHRTFDLLASNLTKLSL 184
           L ++            F    +NLT L L
Sbjct: 453 LKMAGNSFKDNTLSNVFANT-TNLTFLDL 480

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 6/98 (6%)

Query: 104 SHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFC 163
           S  ++++L++ N L    S  F    EL +L+LS      +          L++L L+  
Sbjct: 32  SSTKNIDLSF-NPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 164 VLT-IEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL 200
            +      +F    S LT L  L    T ++ ++ F +
Sbjct: 91  PIQSFSPGSF----SGLTSLENLVAVETKLASLESFPI 124

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 19/96 (19%), Positives = 42/96 (43%), Gaps = 7/96 (7%)

Query: 96  DNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155
           ++  +  L  L+ LN+A++     +L   F  L  L +++LS +    +   ++    + 
Sbjct: 120 ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN 179

Query: 156 T----HLDLSFCVLT-IEHRTFDLLASNLTKLSLLY 186
                 LD+S   +  I+ + F  +   L +L+L  
Sbjct: 180 PQVNLSLDMSLNPIDFIQDQAFQGI--KLHELTLRG 213

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.6 bits (98), Expect = 8e-05
 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 3/84 (3%)

Query: 102 HLSHLQSLNLAYSNFLGSQLSPE-FGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDL 160
           + ++L  L+L+       Q+S   F  L  L  LN+S +N   L     +    L+ LD 
Sbjct: 471 NTTNLTFLDLSKCQL--EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528

Query: 161 SFCVLTIEHRTFDLLASNLTKLSL 184
           SF  +            +L   +L
Sbjct: 529 SFNRIETSKGILQHFPKSLAFFNL 552

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 8/87 (9%)

Query: 103 LSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEM-SHSSKLTHLDLS 161
            + L+ L+L+++      +S  F  L+EL +L+   S    +  +       KL +LD+S
Sbjct: 375 TNSLRHLDLSFNGA--IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432

Query: 162 FCVLT-IEHRTFDLLASNLTKLSLLYL 187
           +          F      LT L+ L +
Sbjct: 433 YTNTKIDFDGIFL----GLTSLNTLKM 455

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 24/106 (22%), Positives = 47/106 (44%), Gaps = 9/106 (8%)

Query: 94  IDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSS 153
           I D S L +L  L +L +  +N + + +S     L  L  L L+  N   + P  +++ +
Sbjct: 78  ITDISPLSNLVKLTNLYI-GTNKI-TDISA-LQNLTNLRELYLNEDNISDISP--LANLT 132

Query: 154 KLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFS 199
           K+  L+L       +        SN+T L+ L +  + +  + P +
Sbjct: 133 KMYSLNLGANHNLSDLSPL----SNMTGLNYLTVTESKVKDVTPIA 174

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 10/106 (9%)

Query: 94  IDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSS 153
           + D  T   L  +  L +     + S        L  L YLNL+ +    + P  +S+  
Sbjct: 34  VTDVVTQEELESITKLVV-AGEKVASI--QGIEYLTNLEYLNLNGNQITDISP--LSNLV 88

Query: 154 KLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFS 199
           KLT+L +    +T        L  NLT L  LYL   N+S I P +
Sbjct: 89  KLTNLYIGTNKITD----ISAL-QNLTNLRELYLNEDNISDISPLA 129

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 12/107 (11%)

Query: 94  IDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSS 153
           I+       L+      L  ++            L+ +T L ++      +    + + +
Sbjct: 12  INQIFPDADLAEGIRAVLQKASVTD---VVTQEELESITKLVVAGEKVASIQG--IEYLT 66

Query: 154 KLTHLDLSFCVLTIEHRTFDLLA-SNLTKLSLLYLGATNMSLIKPFS 199
            L +L+L+   +T      D+   SNL KL+ LY+G   ++ I    
Sbjct: 67  NLEYLNLNGNQIT------DISPLSNLVKLTNLYIGTNKITDISALQ 107

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 42.5 bits (101), Expect = 3e-05
 Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 11/107 (10%)

Query: 94  IDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSS 153
           I D S L +L++L+ L L   + +          L ++  LNL  +N        +S+ +
Sbjct: 100 ITDISALQNLTNLRELYL-NEDNISD--ISPLANLTKMYSLNLG-ANHNLSDLSPLSNMT 155

Query: 154 KLTHLDLSFCVLTIEHRTFDLLA-SNLTKLSLLYLGATNMSLIKPFS 199
            L +L ++   +       D+   +NLT L  L L    +  I P +
Sbjct: 156 GLNYLTVTESKVK------DVTPIANLTDLYSLSLNYNQIEDISPLA 196

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 40.2 bits (95), Expect = 2e-04
 Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 10/95 (10%)

Query: 94  IDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSS 153
           I D + +  L+ L+ LN+   N + S +S     L +L  L L+ +  G      +   +
Sbjct: 255 ISDINAVKDLTKLKMLNVGS-NQI-SDISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLT 311

Query: 154 KLTHLDLSFCVLTIEHRTFDLLA-SNLTKLSLLYL 187
            LT L LS   +T      D+   ++L+K+     
Sbjct: 312 NLTTLFLSQNHIT------DIRPLASLSKMDSADF 340

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 39.8 bits (94), Expect = 3e-04
 Identities = 23/106 (21%), Positives = 48/106 (45%), Gaps = 10/106 (9%)

Query: 94  IDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSS 153
           I+D S L  L+ L       +    + ++P    +  L  L +  +    L P  +++ S
Sbjct: 189 IEDISPLASLTSLHYFTAYVNQI--TDITP-VANMTRLNSLKIGNNKITDLSP--LANLS 243

Query: 154 KLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFS 199
           +LT L++    ++      + +  +LTKL +L +G+  +S I   +
Sbjct: 244 QLTWLEIGTNQIS----DINAV-KDLTKLKMLNVGSNQISDISVLN 284

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 38.3 bits (90), Expect = 8e-04
 Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 10/107 (9%)

Query: 94  IDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSS 153
           I D S L +LS L  L +  +    S ++     L +L  LN+ ++    +    +++ S
Sbjct: 233 ITDLSPLANLSQLTWLEIGTNQI--SDINA-VKDLTKLKMLNVGSNQISDISV--LNNLS 287

Query: 154 KLTHLDLSFCVLTIEH-RTFDLLASNLTKLSLLYLGATNMSLIKPFS 199
           +L  L L+   L  E           LT L+ L+L   +++ I+P +
Sbjct: 288 QLNSLFLNNNQLGNEDMEVI----GGLTNLTTLFLSQNHITDIRPLA 330

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.1 bits (110), Expect = 1e-06
 Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 7/107 (6%)

Query: 94  IDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSS 153
             + + +  LS+L+ L +     + S   P    L  LT L++S S     +  +++   
Sbjct: 78  ATNYNPISGLSNLERLRI-MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLP 136

Query: 154 KLTHLDLSFCVLTIEHRTFDLLA-SNLTKLSLLYLGATNMSLIKPFS 199
           K+  +DLS+          D++    L +L  L +    +   +   
Sbjct: 137 KVNSIDLSYN-----GAITDIMPLKTLPELKSLNIQFDGVHDYRGIE 178

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.8 bits (104), Expect = 6e-06
 Identities = 17/107 (15%), Positives = 40/107 (37%), Gaps = 7/107 (6%)

Query: 94  IDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSS 153
           + D + + +  +++ L +   +   +  +P    L  L  L +   +        +S  +
Sbjct: 56  VTDLTGIEYAHNIKDLTINNIHA--TNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLT 112

Query: 154 KLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNM-SLIKPFS 199
            LT LD+S      +      + + L K++ + L      + I P  
Sbjct: 113 SLTLLDISHS--AHDDSILTKI-NTLPKVNSIDLSYNGAITDIMPLK 156

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 19/100 (19%), Positives = 40/100 (40%), Gaps = 9/100 (9%)

Query: 98  STLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTH 157
             L  L+ L  L++++S    S L+     L ++  ++LS +     +   +    +L  
Sbjct: 106 PNLSGLTSLTLLDISHSAHDDSILTK-INTLPKVNSIDLSYNGAITDIM-PLKTLPELKS 163

Query: 158 LDLSFCVLTIEHRTFDLLA-SNLTKLSLLYLGATNMSLIK 196
           L++ F  +       D     +  KL+ LY  +  +   K
Sbjct: 164 LNIQFDGVH------DYRGIEDFPKLNQLYAFSQTIGGKK 197

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 27/94 (28%), Positives = 34/94 (36%), Gaps = 3/94 (3%)

Query: 96  DNSTLFHLSHLQSLNLAYSNFLGSQLSPE-FGRLKELTYLNLSASNFGGLVPYEMSHSSK 154
             S+   L  LQ L L  S +    +  E F  L  L  L+L +S    L P        
Sbjct: 40  TASSFPFLEQLQLLELG-SQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH 98

Query: 155 LTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLG 188
           L  L L FC L+           NL  L+ L L 
Sbjct: 99  LFELRLYFCGLSDAVLKDGYF-RNLKALTRLDLS 131

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.6 bits (108), Expect = 5e-06
 Identities = 25/114 (21%), Positives = 38/114 (33%), Gaps = 10/114 (8%)

Query: 93  TIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHS 152
            +D    L  + HLQ L L  + F              L  L L  +        E+   
Sbjct: 415 NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD 474

Query: 153 -----SKLTHLDLSFCVLT-IEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL 200
                S L  L L+   L  +    F    S+LT L  L L +  ++++    L
Sbjct: 475 VFEGLSHLQVLYLNHNYLNSLPPGVF----SHLTALRGLSLNSNRLTVLSHNDL 524

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.3 bits (102), Expect = 2e-05
 Identities = 23/99 (23%), Positives = 46/99 (46%), Gaps = 6/99 (6%)

Query: 103 LSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSF 162
            S ++ L+L++  F+ S  S  F  LK+L  LNL+ +    +          L  L+LS+
Sbjct: 265 RSSVRHLDLSH-GFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323

Query: 163 CVLT-IEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL 200
            +L  +    F      L K++ + L   ++++I+  + 
Sbjct: 324 NLLGELYSSNF----YGLPKVAYIDLQKNHIAIIQDQTF 358

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.1 bits (99), Expect = 6e-05
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 1/99 (1%)

Query: 96  DNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155
            +   + L +LQ LNL+Y N LG   S  F  L ++ Y++L  ++   +         KL
Sbjct: 306 ADEAFYGLDNLQVLNLSY-NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL 364

Query: 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL 194
             LDL    LT  H    +    L+   L+ L   N++ 
Sbjct: 365 QTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTA 403

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.1 bits (99), Expect = 6e-05
 Identities = 21/125 (16%), Positives = 44/125 (35%), Gaps = 7/125 (5%)

Query: 81  LDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASN 140
           L LY     L   +  +    +L  L  L+L+ +      L P FG+L  L  ++ S++ 
Sbjct: 102 LRLYFCG--LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159

Query: 141 FGGLVPYEMS--HSSKLTHLDLSFCVLT-IEHRTFDLLASNLTKLSL--LYLGATNMSLI 195
              +  +E+       L+   L+   L       +    +    + L  L +     ++ 
Sbjct: 160 IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVD 219

Query: 196 KPFSL 200
              + 
Sbjct: 220 ITGNF 224

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 26/106 (24%), Positives = 39/106 (36%), Gaps = 9/106 (8%)

Query: 96  DNSTLFHLSHLQSLNLAYSNFLGSQLSPE-FGRLKELTYLNLSASNFGGLVPYEMSHSSK 154
           + ++   L  LQ L +      G  +    F  L  L  L L  + F  L     +  + 
Sbjct: 46  NETSFSRLQDLQFLKV-EQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN 104

Query: 155 LTHLDLSFCVLT---IEHRTFDLLASNLTKLSLLYLGATNMSLIKP 197
           L  L L+ C L    +    F      LT L +L L   N+  I+P
Sbjct: 105 LEVLTLTQCNLDGAVLSGNFFK----PLTSLEMLVLRDNNIKKIQP 146

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 8/88 (9%)

Query: 102 HLSHLQSLNLAYSNFLGSQLSPE-FGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDL 160
           H + L+ L LA +    +++    F  L  L  LNLS +  G +      +  KL  LDL
Sbjct: 297 HFTDLEQLTLAQNEI--NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354

Query: 161 SFCVLT-IEHRTFDLLASNLTKLSLLYL 187
           S+  +  +  ++F      L  L  L L
Sbjct: 355 SYNHIRALGDQSFL----GLPNLKELAL 378

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 25/106 (23%), Positives = 38/106 (35%), Gaps = 6/106 (5%)

Query: 96  DNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155
               L HL  L  L L     + +     F RL  L  L +S   +   +     +   L
Sbjct: 168 PTEALSHLHGLIVLRL-RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226

Query: 156 THLDLSFCVLT-IEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL 200
           T L ++ C LT + +        +L  L  L L    +S I+   L
Sbjct: 227 TSLSITHCNLTAVPYLAV----RHLVYLRFLNLSYNPISTIEGSML 268

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 8/107 (7%)

Query: 96  DNSTLFHLSHLQSLNLAYSNFLGSQLSPE-FGRLKELTYLNLSASNFGGLVPYEMSHSSK 154
           +     +L +L++L L   N L   +    F  L  LT L++S +    L+ Y       
Sbjct: 72  EPGAFNNLFNLRTLGLRS-NRL-KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129

Query: 155 LTHLDLSFCVLT-IEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL 200
           L  L++    L  I HR F    S L  L  L L   N++ I   +L
Sbjct: 130 LKSLEVGDNDLVYISHRAF----SGLNSLEQLTLEKCNLTSIPTEAL 172

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 6/98 (6%)

Query: 104 SHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFC 163
           +  + L+L   N + +    EF     L  L L+ +    + P   ++   L  L L   
Sbjct: 32  TETRLLDLGK-NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90

Query: 164 VLT-IEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL 200
            L  I    F    + L+ L+ L +    + ++  +  
Sbjct: 91  RLKLIPLGVF----TGLSNLTKLDISENKIVILLDYMF 124

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 2/96 (2%)

Query: 93  TIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHS 152
           T+   S   +L++LQ+L +            +F  L  L  L + A +        +   
Sbjct: 112 TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171

Query: 153 SKLTHLDLSFCVLT-IEHRTFDLLASNLTKLSLLYL 187
             + HL L       +     D+L S++  L L   
Sbjct: 172 RDIHHLTLHLSESAFLLEIFADIL-SSVRYLELRDT 206

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.1 bits (107), Expect = 6e-06
 Identities = 16/107 (14%), Positives = 37/107 (34%), Gaps = 6/107 (5%)

Query: 96  DNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEM-SHSSK 154
            +S    LS L+ LNL  + +    ++  F  L  L  L +        +     +  + 
Sbjct: 90  SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTS 149

Query: 155 LTHLDLSFCVLT-IEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL 200
           L  L++    L   + ++      ++  +  L L  +  + +     
Sbjct: 150 LNELEIKALSLRNYQSQSLK----SIRDIHHLTLHLSESAFLLEIFA 192

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.8 bits (101), Expect = 4e-05
 Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 5/96 (5%)

Query: 97  NSTLFHLSHLQSLNLAYSNFLGSQLSPE-FGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155
           +  L   ++LQ L L  S    + +  + F  L  L +L+LS ++   L        S L
Sbjct: 43  HGDLRACANLQVLILKSSRI--NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100

Query: 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATN 191
            +L+L              L  NLT L  L +G   
Sbjct: 101 KYLNLMGNPYQTLGV--TSLFPNLTNLQTLRIGNVE 134

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.6 bits (98), Expect = 8e-05
 Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 1/91 (1%)

Query: 97  NSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT 156
                    ++ L++    +L   LS  +  L+++  + +  S    +      H   L 
Sbjct: 279 ELGKVETVTIRRLHI-PQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLE 337

Query: 157 HLDLSFCVLTIEHRTFDLLASNLTKLSLLYL 187
            LDLS  ++  E+            L  L L
Sbjct: 338 FLDLSENLMVEEYLKNSACKGAWPSLQTLVL 368

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 1/92 (1%)

Query: 96  DNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155
                  L+ L  L +  +  L +  S     ++++ +L L  S    L+       S +
Sbjct: 140 RRIDFAGLTSLNELEI-KALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSV 198

Query: 156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYL 187
            +L+L    L     +   +    + +  L  
Sbjct: 199 RYLELRDTNLARFQFSPLPVDEVSSPMKKLAF 230

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 8/108 (7%)

Query: 96  DNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGL-VPYEMSHSSK 154
           +    + L  L+ L+L+  N L S  S  FG L  L YLNL  + +  L V     + + 
Sbjct: 66  EGDAFYSLGSLEHLDLSD-NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124

Query: 155 LTHLDLSFCVL--TIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL 200
           L  L +        I    F    + LT L+ L + A ++   +  SL
Sbjct: 125 LQTLRIGNVETFSEIRRIDF----AGLTSLNELEIKALSLRNYQSQSL 168

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.6 bits (90), Expect = 9e-04
 Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 8/100 (8%)

Query: 102 HLSHLQSLNLAYSNF--LGSQLSPEFGRLKELTYLNLSASNFGGL--VPYEMSHSSKLTH 157
           HL  L+ L+L+ +       + S   G    L  L LS ++   +      +     LT 
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTS 391

Query: 158 LDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKP 197
           LD+S         +         K+  L L +T + ++K 
Sbjct: 392 LDISRNTFHPMPDSC----QWPEKMRFLNLSSTGIRVVKT 427

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 44.2 bits (105), Expect = 7e-06
 Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 5/102 (4%)

Query: 97  NSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT 156
           N     LS L+ L +A ++F  + L   F  L+ LT+L+LS      L P   +  S L 
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202

Query: 157 HLDLSFCVLT-IEHRTFDLLASNLTKLSLLYLGATNMSLIKP 197
            L++S      ++   +      L  L +L     ++   K 
Sbjct: 203 VLNMSHNNFFSLDTFPYK----CLNSLQVLDYSLNHIMTSKK 240

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 44.2 bits (105), Expect = 8e-06
 Identities = 23/111 (20%), Positives = 46/111 (41%), Gaps = 9/111 (8%)

Query: 93  TIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPE-FGRLKELTYLNLSASNFGGLVPYEM-S 150
            + + S    L +L  L++++++          F  L  L  L ++ ++F      ++ +
Sbjct: 115 QMSEFSVFLSLRNLIYLDISHTHT--RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 172

Query: 151 HSSKLTHLDLSFCVLT-IEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL 200
               LT LDLS C L  +    F+    +L+ L +L +   N   +  F  
Sbjct: 173 ELRNLTFLDLSQCQLEQLSPTAFN----SLSSLQVLNMSHNNFFSLDTFPY 219

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 4/88 (4%)

Query: 99  TLFHLSHLQSLNLAYSNFLGSQLSPE-FGRLKELTYLNLSASNFGGLVPYEMSHSSKLTH 157
               L +L  L+L+       QLSP  F  L  L  LN+S +NF  L  +     + L  
Sbjct: 170 IFTELRNLTFLDLSQCQL--EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 227

Query: 158 LDLSFCVLT-IEHRTFDLLASNLTKLSL 184
           LD S   +   + +      S+L  L+L
Sbjct: 228 LDYSLNHIMTSKKQELQHFPSSLAFLNL 255

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.5 bits (98), Expect = 6e-05
 Identities = 19/92 (20%), Positives = 41/92 (44%), Gaps = 8/92 (8%)

Query: 99  TLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEM-SHSSKLTH 157
           + F  + L+ L+L+++      +S  F  L++L +L+   SN   +  + +      L +
Sbjct: 73  SDFGTTSLKYLDLSFNGV--ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 130

Query: 158 LDLSFCVLT-IEHRTFDLLASNLTKLSLLYLG 188
           LD+S        +  F+     L+ L +L + 
Sbjct: 131 LDISHTHTRVAFNGIFN----GLSSLEVLKMA 158

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.5 bits (98), Expect = 6e-05
 Identities = 21/108 (19%), Positives = 34/108 (31%), Gaps = 8/108 (7%)

Query: 96  DNSTLFHLSHLQSLNLAYSNFLGSQLSPE-FGRLKELTYLNLSASNFGGLVPYEMSHSSK 154
            +     L+ L  L+L+ +         +       L YL+LS  N    +        +
Sbjct: 44  PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS-FNGVITMSSNFLGLEQ 102

Query: 155 LTHLDLSFCVLT--IEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL 200
           L HLD     L    E   F     +L  L  L +  T+  +      
Sbjct: 103 LEHLDFQHSNLKQMSEFSVF----LSLRNLIYLDISHTHTRVAFNGIF 146

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 44.4 bits (105), Expect = 9e-06
 Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 8/101 (7%)

Query: 96  DNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155
                  LS+L+ LNLA  N    +  P    L +L  L+LS ++   + P        L
Sbjct: 177 SEGAFEGLSNLRYLNLAMCNL---REIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHL 233

Query: 156 THLDLSFCVLT-IEHRTFDLLASNLTKLSLLYLGATNMSLI 195
             L +    +  IE   F     NL  L  + L   N++L+
Sbjct: 234 QKLWMIQSQIQVIERNAF----DNLQSLVEINLAHNNLTLL 270

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 9/104 (8%)

Query: 99  TLFHLSHLQSLNLAYSNFLGSQLSPE-FGRLKELTYLNLSASNFGGLVPYEMSHSSKLTH 157
               L++L +L L + N L + +    F  L +L  L L  +    +  Y  +    L  
Sbjct: 107 AFNGLANLNTLEL-FDNRL-TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR 164

Query: 158 LDLSFC--VLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFS 199
           LDL     +  I    F+     L+ L  L L   N+  I   +
Sbjct: 165 LDLGELKRLSYISEGAFE----GLSNLRYLNLAMCNLREIPNLT 204

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 6/98 (6%)

Query: 104 SHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFC 163
           ++ + LNL   N +       F  L+ L  L LS ++   +     +  + L  L+L   
Sbjct: 64  TNTRLLNLHE-NQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122

Query: 164 VLT-IEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL 200
            LT I +  F      L+KL  L+L    +  I  ++ 
Sbjct: 123 RLTTIPNGAF----VYLSKLKELWLRNNPIESIPSYAF 156

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 8/101 (7%)

Query: 96  DNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155
                  L +L+ LNL   N     + P    L  L  L +S ++F  + P      S L
Sbjct: 188 SEGAFEGLFNLKYLNLGMCNI--KDM-PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSL 244

Query: 156 THLDLSFCVLT-IEHRTFDLLASNLTKLSLLYLGATNMSLI 195
             L +    ++ IE   F      L  L  L L   N+S +
Sbjct: 245 KKLWVMNSQVSLIERNAF----DGLASLVELNLAHNNLSSL 281

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 39.0 bits (91), Expect = 5e-04
 Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 9/104 (8%)

Query: 99  TLFHLSHLQSLNLAYSNFLGSQLSPE-FGRLKELTYLNLSASNFGGLVPYEMSHSSKLTH 157
               L+ L +L L + N+L + +    F  L +L  L L  +    +  Y  +    L  
Sbjct: 118 AFNGLASLNTLEL-FDNWL-TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMR 175

Query: 158 LDLSFC--VLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFS 199
           LDL     +  I    F      L  L  L LG  N+  +   +
Sbjct: 176 LDLGELKKLEYISEGAF----EGLFNLKYLNLGMCNIKDMPNLT 215

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 38.6 bits (90), Expect = 7e-04
 Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 6/95 (6%)

Query: 104 SHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFC 163
           S+ + LNL   N +    +  F  L  L  L L  ++   +     +  + L  L+L   
Sbjct: 75  SNTRYLNLME-NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133

Query: 164 VLT-IEHRTFDLLASNLTKLSLLYLGATNMSLIKP 197
            LT I    F      L+KL  L+L    +  I  
Sbjct: 134 WLTVIPSGAF----EYLSKLRELWLRNNPIESIPS 164

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 9/108 (8%)

Query: 96  DNSTLFHLSHLQSLNLAYSNFLGSQLSPE-FGRLKELTYLNLSASNFGGLVPYEMSHSSK 154
           ++     LSHL +L L  +      L+   F  L  L  L    +N   L  + + H   
Sbjct: 68  EDGAYQSLSHLSTLILTGNPI--QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125

Query: 155 LTHLDLSFCVLT--IEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL 200
           L  L+++  ++        F     NLT L  L L +  +  I    L
Sbjct: 126 LKELNVAHNLIQSFKLPEYFS----NLTNLEHLDLSSNKIQSIYCTDL 169

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 5/90 (5%)

Query: 97  NSTLFHLSHLQSLNLAYSNFLGSQLSPE-FGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155
           + + F    LQ L+L+        +    +  L  L+ L L+ +    L     S  S L
Sbjct: 45  SYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102

Query: 156 THLDLSFCVLT-IEHRTFDLLASNLTKLSL 184
             L      L  +E+     L   L +L++
Sbjct: 103 QKLVAVETNLASLENFPIGHL-KTLKELNV 131

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 4/94 (4%)

Query: 93  TIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHS 152
            + + S    L +L  L++          +  F  L  L  L ++ ++F      ++   
Sbjct: 410 QMSEFSVFLSLRNLIYLDI-SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468

Query: 153 -SKLTHLDLSFCVLT-IEHRTFDLLASNLTKLSL 184
              LT LDLS C L  +    F+ L S+L  L++
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSL-SSLQVLNM 501

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.8 bits (101), Expect = 3e-05
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 5/94 (5%)

Query: 96  DNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155
            N     LS L+ L +A ++F  + L   F  L+ LT+L+LS      L P   +  S L
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496

Query: 156 THLDLSFCVLT-IEHRTFDLLASNLTKLSLLYLG 188
             L+++   L  +    FD     LT L  ++L 
Sbjct: 497 QVLNMASNQLKSVPDGIFD----RLTSLQKIWLH 526

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.4 bits (100), Expect = 4e-05
 Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 3/89 (3%)

Query: 98  STLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTH 157
           S    L  L+ L+  +SN         F  L+ L YL++S ++         +  S L  
Sbjct: 390 SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449

Query: 158 LDLSFCVLT--IEHRTFDLLASNLTKLSL 184
           L ++            F  L  NLT L L
Sbjct: 450 LKMAGNSFQENFLPDIFTEL-RNLTFLDL 477

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.4 bits (100), Expect = 5e-05
 Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 6/98 (6%)

Query: 104 SHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFC 163
              ++L+L++ N L    S  F    EL  L+LS      +        S L+ L L+  
Sbjct: 28  FSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 164 VLT-IEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL 200
            +  +    F      L+ L  L    TN++ ++ F +
Sbjct: 87  PIQSLALGAFS----GLSSLQKLVAVETNLASLENFPI 120

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 7/94 (7%)

Query: 96  DNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL 155
           +N  + HL  L+ LN+A++     +L   F  L  L +L+LS++    +   ++    ++
Sbjct: 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175

Query: 156 T----HLDLSFCVLT-IEHRTFDLLASNLTKLSL 184
                 LDLS   +  I+   F  +   L KL+L
Sbjct: 176 PLLNLSLDLSLNPMNFIQPGAFKEI--RLHKLTL 207

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 10/111 (9%)

Query: 94  IDDNSTLFHLSHLQSLNLAYSNFLGSQ--LSPEFGRLKELTYLNLSASNFGGLVPYEMSH 151
             +  +   L  L+ L+L+  N L  +   S        L YL+LS  N    +      
Sbjct: 337 GGNAFSEVDLPSLEFLDLSR-NGLSFKGCCSQSDFGTTSLKYLDLS-FNGVITMSSNFLG 394

Query: 152 SSKLTHLDLSFCVLT--IEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL 200
             +L HLD     L    E   F     +L  L  L +  T+  +      
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFL----SLRNLIYLDISHTHTRVAFNGIF 441

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 9/100 (9%)

Query: 98  STLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTH 157
              F LSHLQ + +  +     +L     +   L  L L+ +    L P  ++  ++L  
Sbjct: 98  DQAFRLSHLQHMTIDAAGL--MELPDTMQQFAGLETLTLARNPLRAL-PASIASLNRLRE 154

Query: 158 LDLSFCVL------TIEHRTFDLLASNLTKLSLLYLGATN 191
           L +  C         +           L  L  L L  T 
Sbjct: 155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG 194

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.9 bits (99), Expect = 5e-05
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 98  STLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTH 157
           +++ +L +L+SL +  S    S L P    L +L  L+L         P      + L  
Sbjct: 200 ASIANLQNLKSLKIRNSPL--SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257

Query: 158 LDLSFC 163
           L L  C
Sbjct: 258 LILKDC 263

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 18/100 (18%), Positives = 30/100 (30%), Gaps = 15/100 (15%)

Query: 98  STLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASN--------FGGL-VPYE 148
            T+   + L++L LA +      L      L  L  L++ A                  E
Sbjct: 121 DTMQQFAGLETLTLARNPL--RALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178

Query: 149 MSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLG 188
                 L  L L +  +     +     +NL  L  L + 
Sbjct: 179 HQGLVNLQSLRLEWTGIRSLPASI----ANLQNLKSLKIR 214

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.5 bits (98), Expect = 7e-05
 Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 10/89 (11%)

Query: 81  LDLYSSCSWL------VGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYL 134
           L +  +C  L      + + D +     L +LQSL L ++      L      L+ L  L
Sbjct: 155 LSI-RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI--RSLPASIANLQNLKSL 211

Query: 135 NLSASNFGGLVPYEMSHSSKLTHLDLSFC 163
            +  S    L    + H  KL  LDL  C
Sbjct: 212 KIRNSPLSAL-GPAIHHLPKLEELDLRGC 239

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 7/89 (7%)

Query: 103 LSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSF 162
                +L L        Q   +  RL  L ++ + A+    L P  M   + L  L L+ 
Sbjct: 80  QPGRVALELRSVPL--PQFPDQAFRLSHLQHMTIDAAGLMEL-PDTMQQFAGLETLTLAR 136

Query: 163 CVLTIEHRTFDLLASNLTKLSLLYLGATN 191
             L     +     ++L +L  L + A  
Sbjct: 137 NPLRALPASI----ASLNRLRELSIRACP 161

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 17/104 (16%)

Query: 98  STLFHLSHLQSLNLAYSNFLGS--------QLSPEFGRLKELTYLNLSASNFGGLVPYEM 149
           +++  L+ L+ L++     L            S E   L  L  L L  +    L P  +
Sbjct: 144 ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL-PASI 202

Query: 150 SHSSKLTHLDLSFCVLTIEHRTFDLLAS--NLTKLSLLYLGATN 191
           ++   L  L +    L+       L  +  +L KL  L L    
Sbjct: 203 ANLQNLKSLKIRNSPLS------ALGPAIHHLPKLEELDLRGCT 240

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 1/69 (1%)

Query: 98  STLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTH 157
                 + L+ L L   + L + L  +  RL +L  L+L        +P  ++       
Sbjct: 247 PIFGGRAPLKRLILKDCSNLLT-LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305

Query: 158 LDLSFCVLT 166
           + +   +  
Sbjct: 306 ILVPPHLQA 314

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 3e-05
 Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 3/94 (3%)

Query: 92  GTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSH 151
           G +D    L    +L  L +     L      +   L EL  L +  S    + P     
Sbjct: 19  GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF 78

Query: 152 SSKLTHLDLSFCVLT-IEHRTFDLLASNLTKLSL 184
           + +L+ L+LSF  L  +  +T   L  +L +L L
Sbjct: 79  TPRLSRLNLSFNALESLSWKTVQGL--SLQELVL 110

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 12/107 (11%)

Query: 94  IDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSS 153
           I     + +L++L  +N   +N L          L +L  + ++ +    + P  +++ +
Sbjct: 58  IKSIDGVEYLNNLTQINF-SNNQLTD--ITPLKNLTKLVDILMNNNQIADITP--LANLT 112

Query: 154 KLTHLDLSFCVLTIEHRTFDLLA-SNLTKLSLLYLGATNMSLIKPFS 199
            LT L L    +T      D+    NLT L+ L L +  +S I   S
Sbjct: 113 NLTGLTLFNNQIT------DIDPLKNLTNLNRLELSSNTISDISALS 153

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.3 bits (100), Expect = 5e-05
 Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 10/106 (9%)

Query: 94  IDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSS 153
           + D  TL  L++L  L+LA +             L +LT L L A+    + P  ++  +
Sbjct: 233 LKDIGTLASLTNLTDLDLANNQISNL---APLSGLTKLTELKLGANQISNISP--LAGLT 287

Query: 154 KLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFS 199
            LT+L+L+   L         + SNL  L+ L L   N+S I P S
Sbjct: 288 ALTNLELNENQLE----DISPI-SNLKNLTYLTLYFNNISDISPVS 328

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 10/106 (9%)

Query: 94  IDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSS 153
           I + S L  L+ L +L L  +     +       LK LTYL L  +N   + P   S  +
Sbjct: 277 ISNISPLAGLTALTNLELNENQL---EDISPISNLKNLTYLTLYFNNISDISPV--SSLT 331

Query: 154 KLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFS 199
           KL  L      ++        L +NLT ++ L  G   +S + P +
Sbjct: 332 KLQRLFFYNNKVS----DVSSL-ANLTNINWLSAGHNQISDLTPLA 372

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 11/106 (10%)

Query: 94  IDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSS 153
           I D + L +L++L  L L  +    + + P    L  L  L LS++    +    +S  +
Sbjct: 102 IADITPLANLTNLTGLTLFNNQI--TDIDP-LKNLTNLNRLELSSNTISDISA--LSGLT 156

Query: 154 KLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFS 199
            L  L     V  ++        +NLT L  L + +  +S I   +
Sbjct: 157 SLQQLSFGNQVTDLKP------LANLTTLERLDISSNKVSDISVLA 196

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 12/107 (11%)

Query: 94  IDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSS 153
           I+   T   L+      L  +N      +     L ++T L         +    + + +
Sbjct: 14  INQIFTDTALAEKMKTVLGKTNVTD---TVSQTDLDQVTTLQADRLGIKSIDG--VEYLN 68

Query: 154 KLTHLDLSFCVLTIEHRTFDLLA-SNLTKLSLLYLGATNMSLIKPFS 199
            LT ++ S   LT      D+    NLTKL  + +    ++ I P +
Sbjct: 69  NLTQINFSNNQLT------DITPLKNLTKLVDILMNNNQIADITPLA 109

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 15/106 (14%), Positives = 39/106 (36%), Gaps = 8/106 (7%)

Query: 94  IDDNSTLFHLSHLQSLNLAYSNFLGSQLSPE-FGRLKELTYLNLSASNFGGLVPYEMSHS 152
           +        L++ + +    S     +L        +++  LNL+      +  Y  +++
Sbjct: 35  VYFGFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA 92

Query: 153 SKLTHLDLSFCVLT-IEHRTFDLLASNLTKLSLLYLGATNMSLIKP 197
             +  L + F  +  +    F     N+  L++L L   ++S +  
Sbjct: 93  HTIQKLYMGFNAIRYLPPHVF----QNVPLLTVLVLERNDLSSLPR 134

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 8/95 (8%)

Query: 94  IDDNSTLFHLSHLQSLNLAYSNFLGSQLSPE-FGRLKELTYLNLSASNFGGLVPYEMSHS 152
           + D + L +   L  ++L+Y+     ++    F +++ L  L +S +    L        
Sbjct: 238 LTDTAWLLNYPGLVEVDLSYNEL--EKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPI 294

Query: 153 SKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYL 187
             L  LDLS   L       +       +L  LYL
Sbjct: 295 PTLKVLDLSHNHLL----HVERNQPQFDRLENLYL 325

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 8/102 (7%)

Query: 98  STLFHLSHLQSLNLAYSNFLGSQLSPE-FGRLKELTYLNLSASNFGGLVPYEMSHSSKLT 156
           + L     ++ LNL     +  ++    F     +  L +  +    L P+   +   LT
Sbjct: 63  ALLDSFRQVELLNLND-LQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120

Query: 157 HLDLSFCVLT-IEHRTFDLLASNLTKLSLLYLGATNMSLIKP 197
            L L    L+ +    F     N  KL+ L +   N+  I+ 
Sbjct: 121 VLVLERNDLSSLPRGIF----HNTPKLTTLSMSNNNLERIED 158

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.5 bits (100), Expect = 4e-05
 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 5/101 (4%)

Query: 102 HLSHLQSLNLAYSNFLGSQLSPE-FGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDL 160
            + +L+ L+L  SN L   L    F  L+ L  L L  ++   +        ++L  L L
Sbjct: 86  PVPNLRYLDL-SSNHL-HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL 143

Query: 161 SFCVLT-IEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL 200
           S   ++           + L KL LL L +  +  +    L
Sbjct: 144 SQNQISRFPVELIKDG-NKLPKLMLLDLSSNKLKKLPLTDL 183

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.4 bits (97), Expect = 8e-05
 Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 8/97 (8%)

Query: 93  TIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPE-FGRLKELTYLNLSASNFGGLVPYEMSH 151
            +    T   L++L SL L++++   + +S E F  +  L YL+LS+++   L  +  S 
Sbjct: 53  RLRAEWTPTRLTNLHSLLLSHNHL--NFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSD 110

Query: 152 SSKLTHLDLSFCVLT-IEHRTFDLLASNLTKLSLLYL 187
              L  L L    +  ++   F+    ++ +L  LYL
Sbjct: 111 LQALEVLLLYNNHIVVVDRNAFE----DMAQLQKLYL 143

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.4 bits (99), Expect = 4e-05
 Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 10/106 (9%)

Query: 94  IDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSS 153
           + D  T   L+ +  +    ++ +   +      L  +T L L+ +    + P  +++  
Sbjct: 33  VTDAVTQNELNSIDQIIA-NNSDI-KSVQG-IQYLPNVTKLFLNGNKLTDIKP--LTNLK 87

Query: 154 KLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFS 199
            L  L L    +         L  +L KL  L L    +S I    
Sbjct: 88  NLGWLFLDENKIK----DLSSL-KDLKKLKSLSLEHNGISDINGLV 128

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.2 bits (99), Expect = 5e-05
 Identities = 15/106 (14%), Positives = 39/106 (36%), Gaps = 8/106 (7%)

Query: 94  IDDNSTLFHLSHLQSLNLAYSNFLGSQLSPE-FGRLKELTYLNLSASNFGGLVPYEMSHS 152
           +        L++ + +    S     +L        +++  LNL+      +  Y  +++
Sbjct: 41  VYFGFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA 98

Query: 153 SKLTHLDLSFCVLT-IEHRTFDLLASNLTKLSLLYLGATNMSLIKP 197
             +  L + F  +  +    F     N+  L++L L   ++S +  
Sbjct: 99  HTIQKLYMGFNAIRYLPPHVF----QNVPLLTVLVLERNDLSSLPR 140

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 8/92 (8%)

Query: 98  STLFHLSHLQSLNLAYSNFLGSQLSPE-FGRLKELTYLNLSASNFGGLVPYEMSHSSKLT 156
           + L     ++ LNL     +  ++    F     +  L +  +    L P+   +   LT
Sbjct: 69  ALLDSFRQVELLNLND-LQI-EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126

Query: 157 HLDLSFCVLT-IEHRTFDLLASNLTKLSLLYL 187
            L L    L+ +    F     N  KL+ L +
Sbjct: 127 VLVLERNDLSSLPRGIF----HNTPKLTTLSM 154

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 20/95 (21%), Positives = 37/95 (38%), Gaps = 8/95 (8%)

Query: 94  IDDNSTLFHLSHLQSLNLAYSNFLGSQLSPE-FGRLKELTYLNLSASNFGGLVPYEMSHS 152
           + D + L +   L  ++L+Y+     ++    F +++ L  L +S +N    +       
Sbjct: 244 LTDTAWLLNYPGLVEVDLSYNEL--EKIMYHPFVKMQRLERLYIS-NNRLVALNLYGQPI 300

Query: 153 SKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYL 187
             L  LDLS   L       +       +L  LYL
Sbjct: 301 PTLKVLDLSHNHLL----HVERNQPQFDRLENLYL 331

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 25/84 (29%), Positives = 31/84 (36%), Gaps = 6/84 (7%)

Query: 102 HLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLS 161
             + L  LNL     L        G L  L  L+LS  N    +P        LT LD+S
Sbjct: 53  PYTRLTQLNL-DRAELTKL--QVDGTLPVLGTLDLS-HNQLQSLPLLGQTLPALTVLDVS 108

Query: 162 FCVLT-IEHRTFDLLASNLTKLSL 184
           F  LT +       L   L +L L
Sbjct: 109 FNRLTSLPLGALRGL-GELQELYL 131

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 38.2 bits (89), Expect = 8e-04
 Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 4/84 (4%)

Query: 102 HLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLS 161
            L  L +L+L   N L S L      L  LT L++S +    L    +    +L  L L 
Sbjct: 75  TLPVLGTLDL-SHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132

Query: 162 FCVLT-IEHRTFDLLASNLTKLSL 184
              L  +           L KLSL
Sbjct: 133 GNELKTLPPGLLTPT-PKLEKLSL 155

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 4/92 (4%)

Query: 96  DNSTLFHLSHLQSLNLAYSNFLGSQLSPE-FGRLKELTYLNLSASNFGGLVPYEMSHSSK 154
           +     +L  L  + +  +N L   ++PE F  L  L YL +S +    L      HS +
Sbjct: 71  EADVFSNLPKLHEIRIEKANNL-LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 129

Query: 155 LTHLDLS--FCVLTIEHRTFDLLASNLTKLSL 184
              LD+     + TIE  +F  L+     L L
Sbjct: 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWL 161

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 6/86 (6%)

Query: 102 HLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLS 161
           + +  +   +   + L   L+        +  L+LS +    +   +++  +KL  L+LS
Sbjct: 8   NGNRYKIEKVTD-SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 162 FCVLTIEHRTFDLLASNLTKLSLLYL 187
             VL  E         +L+ L  L L
Sbjct: 67  SNVLY-ETLDL----ESLSTLRTLDL 87

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 38.7 bits (90), Expect = 7e-04
 Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 4/86 (4%)

Query: 103 LSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSF 162
            + L++L+L+  N L + + PEF     +T+++L  +N   L+   +  S  L H DL  
Sbjct: 190 FAKLKTLDLSS-NKL-AFMGPEFQSAAGVTWISLR-NNKLVLIEKALRFSQNLEHFDLRG 246

Query: 163 CVL-TIEHRTFDLLASNLTKLSLLYL 187
                   R F      +  ++   +
Sbjct: 247 NGFHCGTLRDFFSKNQRVQTVAKQTV 272

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 5/88 (5%)

Query: 98  STLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTH 157
             L     +++L+ A +N   S++S    R +    + L+ +    L   +    S++ +
Sbjct: 93  QELLVGPSIETLHAANNNI--SRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQY 148

Query: 158 LDLSFCVLT-IEHRTFDLLASNLTKLSL 184
           LDL    +  +        +  L  L+L
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTLEHLNL 176

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 4/104 (3%)

Query: 93  TIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPE-FGRLKELTYLNLSASNFGGLVPYEMSH 151
           T+ + S   HL+ LQ L +   +   +++  + F  L  L  L + AS+     P  +  
Sbjct: 138 TLGETSLFSHLTKLQILRVGNMDTF-TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS 196

Query: 152 SSKLTHLDLSFCVLT-IEHRTFDLLASNLTKLSLLYLGATNMSL 194
              ++HL L       +     D+  S++  L L          
Sbjct: 197 IQNVSHLILHMKQHILLLEIFVDVT-SSVECLELRDTDLDTFHF 239

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 1/116 (0%)

Query: 73  NVTGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELT 132
           +VTG ++   + +            +  F    +Q ++L+ S    S L     +  +L 
Sbjct: 62  DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121

Query: 133 YLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLG 188
            L+L        +   ++ +S L  L+LS C           L S+ ++L  L L 
Sbjct: 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS-GFSEFALQTLLSSCSRLDELNLS 176

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 10/106 (9%)

Query: 94  IDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSS 153
           + D  T   L  + +L+   +    + +      L  L  L L  +    L P  + + +
Sbjct: 31  VTDTVTQADLDGITTLSAFGTGV--TTIEG-VQYLNNLIGLELKDNQITDLAP--LKNLT 85

Query: 154 KLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFS 199
           K+T L+LS   L         + + L  +  L L +T ++ + P +
Sbjct: 86  KITELELSGNPLK----NVSAI-AGLQSIKTLDLTSTQITDVTPLA 126

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 12/108 (11%)

Query: 93  TIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHS 152
            I+       L++   +    SN   +        L  +T L+   +    +    + + 
Sbjct: 8   AINVIFPDPALANAIKIAAGKSNV--TDTVT-QADLDGITTLSAFGTGVTTIEG--VQYL 62

Query: 153 SKLTHLDLSFCVLTIEHRTFDLLA-SNLTKLSLLYLGATNMSLIKPFS 199
           + L  L+L    +T      DL    NLTK++ L L    +  +   +
Sbjct: 63  NNLIGLELKDNQIT------DLAPLKNLTKITELELSGNPLKNVSAIA 104

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 5/88 (5%)

Query: 98  STLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTH 157
             L     +++L+ A +N   S++S   G+      + L+ +    L   +    S++ +
Sbjct: 93  QELLVGPSIETLHAANNNI--SRVSCSRGQG--KKNIYLANNKITMLRDLDEGCRSRVQY 148

Query: 158 LDLSFCVLT-IEHRTFDLLASNLTKLSL 184
           LDL    +  +        +  L  L+L
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTLEHLNL 176

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 4/88 (4%)

Query: 98  STLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTH 157
                 + L++L+L+  N L + + PEF     +T+++L  +N   L+   +  S  L H
Sbjct: 185 KGQVVFAKLKTLDLSS-NKL-AFMGPEFQSAAGVTWISLR-NNKLVLIEKALRFSQNLEH 241

Query: 158 LDLSFCVLT-IEHRTFDLLASNLTKLSL 184
            DL          R F      +  ++ 
Sbjct: 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAK 269

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 6/86 (6%)

Query: 102 HLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLS 161
           + +  +   +   + L   L+        +  L+LS +    +   +++  +KL  L+LS
Sbjct: 8   NGNRYKIEKVTD-SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 162 FCVLTIEHRTFDLLASNLTKLSLLYL 187
             VL  E         +L+ L  L L
Sbjct: 67  SNVLY-ETLDL----ESLSTLRTLDL 87

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 13/85 (15%)

Query: 102 HLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLS 161
               L++L ++  N L + L      L EL+  +   ++   L        S L  L + 
Sbjct: 79  LPPELRTLEVSG-NQL-TSLPVLPPGLLELSIFSNPLTHLPALP-------SGLCKLWIF 129

Query: 162 FCVLTIEHRTFDLLASNLTKLSLLY 186
              LT    +  +L   L +LS+  
Sbjct: 130 GNQLT----SLPVLPPGLQELSVSD 150

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 4e-04
 Identities = 45/219 (20%), Positives = 73/219 (33%), Gaps = 56/219 (25%)

Query: 1   FQVDCSSPFHHF--SFKTTHSCPPEQSLALLQFKNNTYVR-SANYSFCNEENSSPK--TN 55
           ++V C   F  F  + K  +S  PE  L +LQ       +   N++  ++ +S+ K   +
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNS--PETVLEMLQ---KLLYQIDPNWTSRSDHSSNIKLRIH 228

Query: 56  SWTEGTD--CCSWDGVTC----DNV-TGNVI-GLDLYSSCSWLVGTID-------DNSTL 100
           S          S     C     NV         +L  SC  L+ T           +T 
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL--SCKILLTTRFKQVTDFLSAATT 286

Query: 101 FH---------LSHLQSLNLAYSNFLG---SQLSPEFGRLKELTYLNLSASNFGGLV--- 145
            H         L+  +  +L    +L      L  E      LT      S     +   
Sbjct: 287 THISLDHHSMTLTPDEVKSL-LLKYLDCRPQDLPRE-----VLTTNPRRLSIIAESIRDG 340

Query: 146 -----PYEMSHSSKLTH-LDLSFCVLT-IEHRT-FDLLA 176
                 ++  +  KLT  ++ S  VL   E+R  FD L+
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 38.4 bits (90), Expect = 6e-04
 Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 9/103 (8%)

Query: 96  DNSTLFHLSHLQSLNLAYSNFLGSQLSPE-FGRLKELTYLNLSASNFGGLVPYEM-SHSS 153
             ++     +L  L L  +    +++    F  L  L  L+LS +     V         
Sbjct: 48  PAASFRACRNLTILWLHSNVL--ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 105

Query: 154 KLTHLDLSFCVLT-IEHRTFDLLASNLTKLSLLYLGATNMSLI 195
           +L  L L  C L  +    F      L  L  LYL    +  +
Sbjct: 106 RLHTLHLDRCGLQELGPGLFR----GLAALQYLYLQDNALQAL 144

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 7/95 (7%)

Query: 96  DNSTLFHLSHLQSLNLAYSNFLGSQLSPE-FGRLKELTYLNLSASNFGGLVPYEMSHSSK 154
           D +    L+ L+ L+L   N     + P  F  L  L  L+L       L P      + 
Sbjct: 72  DAAAFTGLALLEQLDL-SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130

Query: 155 LTHLDLSFCVLT-IEHRTFDLLASNLTKLSLLYLG 188
           L +L L    L  +   TF     +L  L+ L+L 
Sbjct: 131 LQYLYLQDNALQALPDDTFR----DLGNLTHLFLH 161

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	200
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.9
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.89
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.86
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.83
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.8
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.75
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.74
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.74
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.73
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.71
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.69
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.69
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.68
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.67
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.66
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.66
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.65
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.64
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.63
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.62
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.62
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.61
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.61
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.61
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.61
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.6
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.6
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.59
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.59
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.59
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.58
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.58
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.58
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.57
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.57
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.57
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.56
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.56
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.56
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.56
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.56
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.56
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.55
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.55
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.54
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.54
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.54
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.54
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.54
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.53
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.53
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.53
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.52
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.52
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.52
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.51
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.5
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.5
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.5
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.49
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.49
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.49
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.47
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.47
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.47
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.47
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.47
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.47
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.47
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.46
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.46
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.46
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.46
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.46
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.46
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.46
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.45
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.45
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.45
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.45
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.44
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.44
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.43
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.43
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.41
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.41
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.39
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.39
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.39
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.39
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.39
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.38
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.38
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.38
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.37
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.36
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.35
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.34
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.32
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.32
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.31
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.31
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.3
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.3
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.25
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.24
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.24
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.21
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.2
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.19
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.19
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.19
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.17
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.14
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.02
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.02
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.01
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.84
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.81
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.77
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.76
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.64
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.59
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.56
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.49
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.37
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.37
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.27
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.23
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.16
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.98
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.92
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.84
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.74
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.38
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.23
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.16
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.89
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.88
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.84
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.66
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.83
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.74
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.18
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.04
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	94.9
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	92.25

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=6e-28  Score=198.20  Aligned_cols=160  Identities=33%  Similarity=0.499  Sum_probs=142.8

Q ss_pred             CCCHHHHHHHHHHHHhcCCCCCCcccCcCCCCCCCCCCCCCCCCCcc--ccceEecCCC--CcEEEEEcccCCCCCee--
Q 037769           19 SCPPEQSLALLQFKNNTYVRSANYSFCNEENSSPKTNSWTEGTDCCS--WDGVTCDNVT--GNVIGLDLYSSCSWLVG--   92 (200)
Q Consensus        19 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~c~--w~gv~c~~~~--~~l~~L~L~~~~n~l~~--   92 (200)
                      .|.++|++||++||..+.++             ..+.+|..+.+||.  |.||.|+...  ++|+.|++  ++|.+.+  
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~-------------~~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L--~~~~l~~~~   66 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNP-------------TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDL--SGLNLPKPY   66 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCC-------------GGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEE--ECCCCSSCE
T ss_pred             CCCHHHHHHHHHHHHhcCCc-------------ccccCCCCCCCCCcCCCcceEeCCCCCCceEEEEEC--CCCCccCCc
Confidence            59999999999999999654             24678987788998  9999998654  79999999  9999998  


Q ss_pred             ccCCCccccCCCCCcEEEccC-CCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCc
Q 037769           93 TIDDNSTLFHLSHLQSLNLAY-SNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRT  171 (200)
Q Consensus        93 ~~p~~~~l~~l~~L~~L~L~~-n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~  171 (200)
                      .+|.  .+.++++|++|++++ |.+.+. +|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.++   +.
T Consensus        67 ~~~~--~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~---~~  140 (313)
T 1ogq_A           67 PIPS--SLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS---GT  140 (313)
T ss_dssp             ECCG--GGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE---SC
T ss_pred             ccCh--hHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccC---Cc
Confidence            8888  899999999999995 999988 8999999999999999999999889999999999999999999994   56


Q ss_pred             hhhhhcCCCCCCEEecccccCCcCCCCC
Q 037769          172 FDLLASNLTKLSLLYLGATNMSLIKPFS  199 (200)
Q Consensus       172 lp~~l~~l~~L~~L~Ls~N~l~g~iP~~  199 (200)
                      +|..+..+++|++|++++|.++|.+|..
T Consensus       141 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~  168 (313)
T 1ogq_A          141 LPPSISSLPNLVGITFDGNRISGAIPDS  168 (313)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCEEECCGG
T ss_pred             CChHHhcCCCCCeEECcCCcccCcCCHH
Confidence            7888889999999999999998888864

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.90  E-value=4.2e-24  Score=190.64  Aligned_cols=165  Identities=19%  Similarity=0.211  Sum_probs=137.7

Q ss_pred             CCHHHHHHHHHHHHhcCCCCCCcccCcCCCCCCCCCCCCCCCCCccc---cceEecCCCCcEEEEEcccCCCCCeeccCC
Q 037769           20 CPPEQSLALLQFKNNTYVRSANYSFCNEENSSPKTNSWTEGTDCCSW---DGVTCDNVTGNVIGLDLYSSCSWLVGTIDD   96 (200)
Q Consensus        20 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~c~w---~gv~c~~~~~~l~~L~L~~~~n~l~~~~p~   96 (200)
                      ....|++||.+++.++.++ . |...-  ..+....+|+.+.++|.|   .||+|+.. ++|+.|+|  +++++.|.+|+
T Consensus        27 ~~~~d~~aL~~~~~~~~~~-~-w~~~~--~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L--~~~~l~g~lp~   99 (636)
T 4eco_A           27 EYIKDYLALKEIWDALNGK-N-WSQQG--FGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSL--EGFGASGRVPD   99 (636)
T ss_dssp             HHHHHHHHHHHHHHHTTGG-G-CCCCC--------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEEC--TTSCCEEEECG
T ss_pred             hHHHHHHHHHHHHHHcCCC-C-cccCC--cCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEe--cCcccCCcCCh
Confidence            4457899999999998876 3 31000  000123479988899999   99999875 89999999  99999999999


Q ss_pred             CccccCCCCCcEEEccCCCC------------------------------------------------------------
Q 037769           97 NSTLFHLSHLQSLNLAYSNF------------------------------------------------------------  116 (200)
Q Consensus        97 ~~~l~~l~~L~~L~L~~n~l------------------------------------------------------------  116 (200)
                        .++++++|++|+|++|.+                                                            
T Consensus       100 --~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~  177 (636)
T 4eco_A          100 --AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK  177 (636)
T ss_dssp             --GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC
T ss_pred             --HHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccc
Confidence              999999999999999854                                                            


Q ss_pred             ------------------CCCCCChhccCCCCCCEEeccCCcCCCC-----------------Cccccc--CCCCCCEEe
Q 037769          117 ------------------LGSQLSPEFGRLKELTYLNLSASNFGGL-----------------VPYEMS--HSSKLTHLD  159 (200)
Q Consensus       117 ------------------~~~~~p~~l~~l~~L~~L~Ls~n~l~~~-----------------~P~~l~--~l~~L~~L~  159 (200)
                                        ++  +|..++.+++|++|+|++|.+++.                 +|..++  ++++|++|+
T Consensus       178 ~~~~~l~~l~l~~~~n~l~~--ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~  255 (636)
T 4eco_A          178 SSRITLKDTQIGQLSNNITF--VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE  255 (636)
T ss_dssp             CCCCCCCTTTTTCCSCEEEE--ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred             ccccchhhhhhccccCCCcc--CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEE
Confidence                              22  678899999999999999999985                 999998  999999999


Q ss_pred             ccCCcCCCCCCchhhhhcCCCCCCEEeccccc-CCc-CCCC
Q 037769          160 LSFCVLTIEHRTFDLLASNLTKLSLLYLGATN-MSL-IKPF  198 (200)
Q Consensus       160 Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~-l~g-~iP~  198 (200)
                      |++|.+   .+.+|..++++++|++|++++|+ ++| .+|.
T Consensus       256 L~~n~l---~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~  293 (636)
T 4eco_A          256 VYNCPN---LTKLPTFLKALPEMQLINVACNRGISGEQLKD  293 (636)
T ss_dssp             EECCTT---CSSCCTTTTTCSSCCEEECTTCTTSCHHHHHH
T ss_pred             ecCCcC---CccChHHHhcCCCCCEEECcCCCCCccccchH
Confidence            999999   46788899999999999999998 888 7774

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.89  E-value=2.4e-23  Score=189.26  Aligned_cols=158  Identities=21%  Similarity=0.261  Sum_probs=119.4

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCCCCCcccCcCCCCCCCCCCCCCCCCCccccceEecCCCCcEEEEEcccCCCCCeec---
Q 037769           17 THSCPPEQSLALLQFKNNTYVRSANYSFCNEENSSPKTNSWTEGTDCCSWDGVTCDNVTGNVIGLDLYSSCSWLVGT---   93 (200)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~c~w~gv~c~~~~~~l~~L~L~~~~n~l~~~---   93 (200)
                      ...+.++|++||++||+.+.++             ..+.+|..+.+||.|.||+|+  .++|+.|+|  +++.+.|.   
T Consensus         6 ~~~~~~~~~~all~~k~~~~~~-------------~~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L--~~~~l~g~~~~   68 (768)
T 3rgz_A            6 PSQSLYREIHQLISFKDVLPDK-------------NLLPDWSSNKNPCTFDGVTCR--DDKVTSIDL--SSKPLNVGFSA   68 (768)
T ss_dssp             --CCHHHHHHHHHHHHTTCSCT-------------TSSTTCCTTSCGGGSTTEEEE--TTEEEEEEC--TTSCCCEEHHH
T ss_pred             cccCCHHHHHHHHHHHhhCCCc-------------ccccCCCCCCCCcCCcceEEC--CCcEEEEEC--CCCCcCCccCc
Confidence            3455778999999999999855             257889877899999999998  489999999  99998876   


Q ss_pred             cC-----------------------CCccccCCCCCcEEEccCCCCCCCCCCh--hccCCCCCCEEeccCCcCCCCCccc
Q 037769           94 ID-----------------------DNSTLFHLSHLQSLNLAYSNFLGSQLSP--EFGRLKELTYLNLSASNFGGLVPYE  148 (200)
Q Consensus        94 ~p-----------------------~~~~l~~l~~L~~L~L~~n~l~~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~P~~  148 (200)
                      ++                       .  .+..+++|++|+|++|.+++. +|.  .++.+++|++|++++|.+.+.+|..
T Consensus        69 l~~~l~~L~~L~~l~~~~~~~~~l~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~  145 (768)
T 3rgz_A           69 VSSSLLSLTGLESLFLSNSHINGSVS--GFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVS  145 (768)
T ss_dssp             HHHHTTTCTTCCEEECTTSCEEECCC--CCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCC
T ss_pred             cChhHhccCcccccCCcCCCcCCCch--hhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHH
Confidence            43                       3  577778888888888888876 777  7888888888888888888777765


Q ss_pred             c-cCCCCCCEEeccCCcCCCCCCchhhh---hcCCCCCCEEecccccCCcCCC
Q 037769          149 M-SHSSKLTHLDLSFCVLTIEHRTFDLL---ASNLTKLSLLYLGATNMSLIKP  197 (200)
Q Consensus       149 l-~~l~~L~~L~Ls~N~l~~~~~~lp~~---l~~l~~L~~L~Ls~N~l~g~iP  197 (200)
                      + ..+++|++|+|++|.++   +..|..   +.++++|++|++++|.+++.+|
T Consensus       146 ~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  195 (768)
T 3rgz_A          146 GGLKLNSLEVLDLSANSIS---GANVVGWVLSDGCGELKHLAISGNKISGDVD  195 (768)
T ss_dssp             SCCCCTTCSEEECCSSCCE---EETHHHHHHTTCCTTCCEEECCSSEEESCCB
T ss_pred             HhccCCCCCEEECCCCccC---CcCChhhhhhccCCCCCEEECCCCcccccCC
Confidence            5 67788888888888874   334443   4555555555555555554443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.86  E-value=2.3e-22  Score=184.84  Aligned_cols=162  Identities=22%  Similarity=0.238  Sum_probs=132.5

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCCCCCcccCcCCCCCCCCCCCCCCCCC--ccc------------cceEecCCCCcEEEEE
Q 037769           17 THSCPPEQSLALLQFKNNTYVRSANYSFCNEENSSPKTNSWTEGTDC--CSW------------DGVTCDNVTGNVIGLD   82 (200)
Q Consensus        17 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--c~w------------~gv~c~~~~~~l~~L~   82 (200)
                      .+.+..+|+.||++||.++.++  +|         .....|. ..++  |.|            .||.|+. .++|+.|+
T Consensus       263 ~~~~~~~d~~ALl~~k~~l~~~--~W---------~~~~~~~-~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~  329 (876)
T 4ecn_A          263 ETAEYIKDYKALKAIWEALDGK--NW---------RYYSGTI-NNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLS  329 (876)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTGG--GC---------CCCCSSC-SSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEE
T ss_pred             ccccchHHHHHHHHHHHHcCCC--CC---------CcCCCcc-cccCCccccccccccccccCcCceEecC-CCCEEEEE
Confidence            3455678999999999998654  21         1111121 1245  999            9999987 48999999


Q ss_pred             cccCCCCCeeccCCCccccCCCCCcEEEc-cCCCCCCC------------------------------------------
Q 037769           83 LYSSCSWLVGTIDDNSTLFHLSHLQSLNL-AYSNFLGS------------------------------------------  119 (200)
Q Consensus        83 L~~~~n~l~~~~p~~~~l~~l~~L~~L~L-~~n~l~~~------------------------------------------  119 (200)
                      |  +++++.|.+|+  .+++|++|+.|+| ++|.+.|.                                          
T Consensus       330 L--s~~~L~G~ip~--~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~  405 (876)
T 4ecn_A          330 L--AGFGAKGRVPD--AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQ  405 (876)
T ss_dssp             C--TTTCCEEEECG--GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHH
T ss_pred             C--ccCCCCCcCch--HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHH
Confidence            9  99999999999  9999999999999 66643221                                          


Q ss_pred             ---------------------------------CCChhccCCCCCCEEeccCCcCCC-----------------CCcccc
Q 037769          120 ---------------------------------QLSPEFGRLKELTYLNLSASNFGG-----------------LVPYEM  149 (200)
Q Consensus       120 ---------------------------------~~p~~l~~l~~L~~L~Ls~n~l~~-----------------~~P~~l  149 (200)
                                                       .+|..++.+++|+.|+|++|.+++                 .+|..+
T Consensus       406 ~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l  485 (876)
T 4ecn_A          406 DAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEEL  485 (876)
T ss_dssp             HHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC
T ss_pred             HHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhh
Confidence                                             067788999999999999999998                 389988


Q ss_pred             c--CCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEeccccc-CCc-CCCC
Q 037769          150 S--HSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATN-MSL-IKPF  198 (200)
Q Consensus       150 ~--~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~-l~g-~iP~  198 (200)
                      +  ++++|++|+|++|++   .+.+|..++++++|++|+|++|+ ++| .||.
T Consensus       486 ~f~~L~~L~~L~Ls~N~l---~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~  535 (876)
T 4ecn_A          486 SWSNLKDLTDVELYNCPN---MTQLPDFLYDLPELQSLNIACNRGISAAQLKA  535 (876)
T ss_dssp             CGGGCTTCCEEEEESCTT---CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHH
T ss_pred             hhccCCCCCEEECcCCCC---CccChHHHhCCCCCCEEECcCCCCcccccchH
Confidence            8  999999999999998   46788999999999999999998 888 7774

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.83  E-value=1.4e-21  Score=161.30  Aligned_cols=129  Identities=18%  Similarity=0.289  Sum_probs=94.0

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCCCCcccCcCCCCCCCCCCC----CCCCCCccccceEecC--------CCCcEEEEEccc
Q 037769           18 HSCPPEQSLALLQFKNNTYVRSANYSFCNEENSSPKTNSW----TEGTDCCSWDGVTCDN--------VTGNVIGLDLYS   85 (200)
Q Consensus        18 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~W----~~~~~~c~w~gv~c~~--------~~~~l~~L~L~~   85 (200)
                      ..+..+|+.||++||..+..+ ..          .+...|    ....++|.|.|+.|..        ...+|+.|++  
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~-~~----------~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L--   88 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNAD-RN----------RWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALEL--   88 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHC-CT----------THHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEE--
T ss_pred             cccCchHHHHHHHHHHhccCC-ch----------hhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEc--
Confidence            345567899999999988544 21          245678    3467899999999942        2367888888  


Q ss_pred             CCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcC
Q 037769           86 SCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVL  165 (200)
Q Consensus        86 ~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l  165 (200)
                      ++|.+. .+|+  .+..+++|++|++++|.++ . +|..+..+++|++|+|++|.++ .+|..+..+++|++|++++|++
T Consensus        89 ~~n~l~-~lp~--~l~~l~~L~~L~L~~n~l~-~-lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~  162 (328)
T 4fcg_A           89 RSVPLP-QFPD--QAFRLSHLQHMTIDAAGLM-E-LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPE  162 (328)
T ss_dssp             ESSCCS-SCCS--CGGGGTTCSEEEEESSCCC-C-CCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETT
T ss_pred             cCCCch-hcCh--hhhhCCCCCEEECCCCCcc-c-hhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCC
Confidence            888877 6676  6777777888888777777 3 6777777777777777777777 6677777777777777777655

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.80  E-value=5.8e-19  Score=138.58  Aligned_cols=132  Identities=21%  Similarity=0.169  Sum_probs=112.4

Q ss_pred             CCCCCCCCCccccceEecCC---------CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhc
Q 037769           55 NSWTEGTDCCSWDGVTCDNV---------TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEF  125 (200)
Q Consensus        55 ~~W~~~~~~c~w~gv~c~~~---------~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l  125 (200)
                      ..|......|+|.+|.|...         ..+++.|+|  ++|.+.+..+.  .+..+++|++|+|++|.+... .+..+
T Consensus        10 ~~~~~~~~~Cs~~~v~c~~~~l~~ip~~~~~~L~~L~L--s~n~i~~~~~~--~~~~l~~L~~L~L~~N~l~~i-~~~~~   84 (229)
T 3e6j_A           10 SAACPSQCSCSGTTVDCRSKRHASVPAGIPTNAQILYL--HDNQITKLEPG--VFDSLINLKELYLGSNQLGAL-PVGVF   84 (229)
T ss_dssp             -CCCCTTCEEETTEEECTTSCCSSCCSCCCTTCSEEEC--CSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCC-CTTTT
T ss_pred             hccCCCCCEEeCCEeEccCCCcCccCCCCCCCCCEEEc--CCCccCccCHH--HhhCccCCcEEECCCCCCCCc-Chhhc
Confidence            34556678899999999752         357899999  99999987787  899999999999999999874 44567


Q ss_pred             cCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcC
Q 037769          126 GRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLI  195 (200)
Q Consensus       126 ~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~  195 (200)
                      ..+++|++|+|++|.+++..+..+..+++|++|+|++|+++    .+|..+..+++|++|+|++|+|++.
T Consensus        85 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~----~lp~~~~~l~~L~~L~L~~N~l~~~  150 (229)
T 3e6j_A           85 DSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT----ELPRGIERLTHLTHLALDQNQLKSI  150 (229)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC----SCCTTGGGCTTCSEEECCSSCCCCC
T ss_pred             ccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc----ccCcccccCCCCCEEECCCCcCCcc
Confidence            89999999999999999666666889999999999999994    6788889999999999999999853

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.75  E-value=6e-18  Score=129.31  Aligned_cols=127  Identities=18%  Similarity=0.146  Sum_probs=110.1

Q ss_pred             ccccceEecCC---------CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEE
Q 037769           64 CSWDGVTCDNV---------TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYL  134 (200)
Q Consensus        64 c~w~gv~c~~~---------~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L  134 (200)
                      |.|..+.|...         ...++.|++  ++|.+.+..+.. .+..+++|++|++++|.+++. .|..+..+++|++|
T Consensus         8 C~~~~l~~s~~~l~~ip~~~~~~l~~L~l--~~n~i~~~~~~~-~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L   83 (192)
T 1w8a_A            8 CEGTTVDCTGRGLKEIPRDIPLHTTELLL--NDNELGRISSDG-LFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQEL   83 (192)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEEC--CSCCCCSBCCSC-SGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEE
T ss_pred             ECCCEEEcCCCCcCcCccCCCCCCCEEEC--CCCcCCccCCcc-ccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEE
Confidence            77888888642         247899999  999998655531 388999999999999999987 78899999999999


Q ss_pred             eccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCC
Q 037769          135 NLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKP  197 (200)
Q Consensus       135 ~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP  197 (200)
                      +|++|.+++..|..+..+++|++|+|++|+++   +..|..+..+++|++|+|++|++.+..+
T Consensus        84 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~---~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQIS---CVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             ECCSCCCCEECSSSSTTCTTCCEEECCSSCCC---EECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             ECCCCcCCccCHHHhcCCCCCCEEECCCCcCC---eeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            99999999877778999999999999999995   4557789999999999999999987654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.74  E-value=2.6e-17  Score=126.76  Aligned_cols=124  Identities=26%  Similarity=0.275  Sum_probs=94.4

Q ss_pred             ccccceEecCC---------CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEE
Q 037769           64 CSWDGVTCDNV---------TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYL  134 (200)
Q Consensus        64 c~w~gv~c~~~---------~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L  134 (200)
                      |.|.+|.|...         ..+++.|++  ++|.+.+..+.  .+..+++|++|++++|.+++. .+..+..+++|++|
T Consensus         7 C~~~~v~c~~~~l~~~p~~~~~~l~~L~l--~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L   81 (208)
T 2o6s_A            7 CSGTTVECYSQGRTSVPTGIPAQTTYLDL--ETNSLKSLPNG--VFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYL   81 (208)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCSEEEC--CSSCCCCCCTT--TTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred             ECCCEEEecCCCccCCCCCCCCCCcEEEc--CCCccCcCChh--hhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEE
Confidence            78999998642         246889999  99998865555  678888999999999988864 44456788888888


Q ss_pred             eccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcC
Q 037769          135 NLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLI  195 (200)
Q Consensus       135 ~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~  195 (200)
                      ++++|.+++..+..+..+++|++|++++|+++   ...+..+..+++|++|++++|.+++.
T Consensus        82 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~---~~~~~~~~~l~~L~~L~l~~N~l~~~  139 (208)
T 2o6s_A           82 NLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ---SLPDGVFDKLTQLKDLRLYQNQLKSV  139 (208)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             ECCCCcCCccCHhHhcCccCCCEEEcCCCcCc---ccCHhHhccCCcCCEEECCCCcccee
Confidence            88888888555556788888888888888884   22334467778888888888887753

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.74  E-value=2.1e-17  Score=128.89  Aligned_cols=126  Identities=17%  Similarity=0.137  Sum_probs=104.1

Q ss_pred             ccccceEecCC---------CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEE
Q 037769           64 CSWDGVTCDNV---------TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYL  134 (200)
Q Consensus        64 c~w~gv~c~~~---------~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L  134 (200)
                      |.|..+.|...         ...++.|++  ++|.+.+..+.  .+..+++|++|+|++|.+++. .|..+..+++|++|
T Consensus        11 C~~~~v~c~~~~l~~iP~~l~~~l~~L~l--~~n~i~~i~~~--~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L   85 (220)
T 2v9t_B           11 CSNNIVDCRGKGLTEIPTNLPETITEIRL--EQNTIKVIPPG--AFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSL   85 (220)
T ss_dssp             EETTEEECTTSCCSSCCSSCCTTCCEEEC--CSSCCCEECTT--SSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEE
T ss_pred             ECCCEEEcCCCCcCcCCCccCcCCCEEEC--CCCcCCCcCHh--HhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEE
Confidence            77888888642         247899999  99999876666  788899999999999999886 68889999999999


Q ss_pred             eccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCC
Q 037769          135 NLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKP  197 (200)
Q Consensus       135 ~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP  197 (200)
                      +|++|.++...+..+..+++|++|+|++|+++   ...|..|..+++|++|+|++|+|++..|
T Consensus        86 ~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~---~~~~~~~~~l~~L~~L~L~~N~l~~~~~  145 (220)
T 2v9t_B           86 VLYGNKITELPKSLFEGLFSLQLLLLNANKIN---CLRVDAFQDLHNLNLLSLYDNKLQTIAK  145 (220)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             ECCCCcCCccCHhHccCCCCCCEEECCCCCCC---EeCHHHcCCCCCCCEEECCCCcCCEECH
Confidence            99999998544445788999999999999994   4446778889999999999999986544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.74  E-value=1.9e-17  Score=124.60  Aligned_cols=125  Identities=21%  Similarity=0.274  Sum_probs=106.3

Q ss_pred             ccccceEecCC---------CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEE
Q 037769           64 CSWDGVTCDNV---------TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYL  134 (200)
Q Consensus        64 c~w~gv~c~~~---------~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L  134 (200)
                      |.|.++.|...         ...++.|++  ++|.+.+..+.  .+..+++|++|++++|.+++. .+..+..+++|+.|
T Consensus         7 C~~~~l~~~~~~l~~~p~~~~~~l~~L~l--~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L   81 (177)
T 2o6r_A            7 CSGTEIRCNSKGLTSVPTGIPSSATRLEL--ESNKLQSLPHG--VFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTIL   81 (177)
T ss_dssp             EETTEEECCSSCCSSCCTTCCTTCSEEEC--CSSCCCCCCTT--TTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred             eCCCEEEecCCCCccCCCCCCCCCcEEEe--CCCcccEeCHH--HhcCcccccEEECCCCcceEe-ChhHccCCCccCEE
Confidence            78999999642         257899999  99999866555  678999999999999999975 55567899999999


Q ss_pred             eccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhh-hhcCCCCCCEEecccccCCcCCC
Q 037769          135 NLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDL-LASNLTKLSLLYLGATNMSLIKP  197 (200)
Q Consensus       135 ~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~-~l~~l~~L~~L~Ls~N~l~g~iP  197 (200)
                      ++++|.+++..+..+..+++|++|++++|+++    .+|. .+..+++|++|++++|++.+..|
T Consensus        82 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~----~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           82 YLHENKLQSLPNGVFDKLTQLKELALDTNQLK----SVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS----CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ECCCCCccccCHHHhhCCcccCEEECcCCcce----EeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            99999999766667889999999999999995    3444 46889999999999999988654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.73  E-value=2.4e-17  Score=128.66  Aligned_cols=129  Identities=16%  Similarity=0.140  Sum_probs=89.0

Q ss_pred             ccccceEecCC---------CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEE
Q 037769           64 CSWDGVTCDNV---------TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYL  134 (200)
Q Consensus        64 c~w~gv~c~~~---------~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L  134 (200)
                      |.|..+.|.+.         ...++.|++  ++|.+.+..+.. .+..+++|++|++++|.+++. .+..+..+++|++|
T Consensus        11 C~~~~l~~s~n~l~~iP~~~~~~~~~L~L--~~N~l~~~~~~~-~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L   86 (220)
T 2v70_A           11 CEGTTVDCSNQKLNKIPEHIPQYTAELRL--NNNEFTVLEATG-IFKKLPQLRKINFSNNKITDI-EEGAFEGASGVNEI   86 (220)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCSEEEC--CSSCCCEECCCC-CGGGCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEE
T ss_pred             ECCCEeEeCCCCcccCccCCCCCCCEEEc--CCCcCCccCchh-hhccCCCCCEEECCCCcCCEE-CHHHhCCCCCCCEE
Confidence            56777777532         235677788  888777654431 467777788888888777764 44567777777777


Q ss_pred             eccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCCC
Q 037769          135 NLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFS  199 (200)
Q Consensus       135 ~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~~  199 (200)
                      +|++|.+++..|..+..+++|++|+|++|+++   ...|..+..+++|++|+|++|+|++..|..
T Consensus        87 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  148 (220)
T 2v70_A           87 LLTSNRLENVQHKMFKGLESLKTLMLRSNRIT---CVGNDSFIGLSSVRLLSLYDNQITTVAPGA  148 (220)
T ss_dssp             ECCSSCCCCCCGGGGTTCSSCCEEECTTSCCC---CBCTTSSTTCTTCSEEECTTSCCCCBCTTT
T ss_pred             ECCCCccCccCHhHhcCCcCCCEEECCCCcCC---eECHhHcCCCccCCEEECCCCcCCEECHHH
Confidence            77777777666666777777777777777773   334566777777777777777777655543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.71  E-value=1.1e-16  Score=126.95  Aligned_cols=112  Identities=21%  Similarity=0.195  Sum_probs=59.9

Q ss_pred             cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCC
Q 037769           77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT  156 (200)
Q Consensus        77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~  156 (200)
                      +++.|++  ++|.+.+..+.  .+..+++|++|++++|.+++. .+..+..+++|++|+|++|.+++..+..+..+++|+
T Consensus        60 ~L~~L~L--~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  134 (251)
T 3m19_A           60 KLTWLNL--DYNQLQTLSAG--VFDDLTELGTLGLANNQLASL-PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLK  134 (251)
T ss_dssp             TCCEEEC--TTSCCCCCCTT--TTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cCCEEEC--CCCcCCccCHh--HhccCCcCCEEECCCCccccc-ChhHhcccCCCCEEEcCCCcCCCcChhHhccCCccc
Confidence            4455555  55555444333  445555555555555555543 334445555555555555555543333445556666


Q ss_pred             EEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCC
Q 037769          157 HLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIK  196 (200)
Q Consensus       157 ~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~i  196 (200)
                      +|+|++|+++   ...+..+..+++|++|+|++|++++..
T Consensus       135 ~L~Ls~N~l~---~~~~~~~~~l~~L~~L~L~~N~l~~~~  171 (251)
T 3m19_A          135 ELRLNTNQLQ---SIPAGAFDKLTNLQTLSLSTNQLQSVP  171 (251)
T ss_dssp             EEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             EEECcCCcCC---ccCHHHcCcCcCCCEEECCCCcCCccC
Confidence            6666666653   122234666667777777777766533

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.69  E-value=3.7e-16  Score=125.06  Aligned_cols=110  Identities=23%  Similarity=0.218  Sum_probs=67.2

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      ..++.|++  ++|.+.+..+.  .+.++++|++|++++|.++.. .+..+..+++|++|++++|.+++..+..+..+++|
T Consensus        37 ~~l~~L~l--~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  111 (270)
T 2o6q_A           37 ADTKKLDL--QSNKLSSLPSK--AFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNL  111 (270)
T ss_dssp             TTCSEEEC--CSSCCSCCCTT--SSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSC
T ss_pred             CCCCEEEC--cCCCCCeeCHH--HhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCC
Confidence            35677788  77777755555  577777777777777777653 33334667777777777777764444455666666


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCC
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMS  193 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~  193 (200)
                      ++|++++|+++   ...+..+..+++|++|++++|.+.
T Consensus       112 ~~L~l~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~  146 (270)
T 2o6q_A          112 AELRLDRNQLK---SLPPRVFDSLTKLTYLSLGYNELQ  146 (270)
T ss_dssp             CEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CEEECCCCccC---eeCHHHhCcCcCCCEEECCCCcCC
Confidence            66666666663   222233445555555555555544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.69  E-value=3.4e-17  Score=148.80  Aligned_cols=108  Identities=26%  Similarity=0.284  Sum_probs=102.6

Q ss_pred             CCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcC
Q 037769           86 SCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVL  165 (200)
Q Consensus        86 ~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l  165 (200)
                      ..|.+.|.+|.  .+..++.|++|++++|.+++. +|..++.++.|+.|+|++|.++|.+|..++.+++|+.|+|++|++
T Consensus       616 ~~~~~~g~~~~--~~~~l~~L~~LdLs~N~l~g~-ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l  692 (768)
T 3rgz_A          616 TSRVYGGHTSP--TFDNNGSMMFLDMSYNMLSGY-IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL  692 (768)
T ss_dssp             TSCEEEEECCC--SCSSSBCCCEEECCSSCCBSC-CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred             ccceecccCch--hhhccccccEEECcCCccccc-CCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcc
Confidence            56788899998  899999999999999999998 999999999999999999999999999999999999999999999


Q ss_pred             CCCCCchhhhhcCCCCCCEEecccccCCcCCCCC
Q 037769          166 TIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFS  199 (200)
Q Consensus       166 ~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~~  199 (200)
                      +   +.+|..++.++.|++|++++|+++|.||..
T Consensus       693 ~---g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          693 D---GRIPQAMSALTMLTEIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             E---ECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred             c---CcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence            4   678999999999999999999999999963

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.68  E-value=9.4e-17  Score=132.34  Aligned_cols=115  Identities=23%  Similarity=0.206  Sum_probs=96.1

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .+++.|++  ++|.+. .+|.  .+..+++|++|++++|.+++  +|+.+..+++|++|++++|.+.+.+|..++.+++|
T Consensus       183 ~~L~~L~L--~~n~l~-~lp~--~l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L  255 (328)
T 4fcg_A          183 VNLQSLRL--EWTGIR-SLPA--SIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL  255 (328)
T ss_dssp             TTCCEEEE--EEECCC-CCCG--GGGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCC
T ss_pred             CCCCEEEC--cCCCcC-cchH--hhcCCCCCCEEEccCCCCCc--CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCC
Confidence            45677777  777777 6676  68888888888888888886  67778888889999999988888888888888999


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCCCC
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL  200 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~~~  200 (200)
                      ++|+|++|++   .+.+|..+.++++|++|+|++|++.|.+|..+
T Consensus       256 ~~L~L~~n~~---~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l  297 (328)
T 4fcg_A          256 KRLILKDCSN---LLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI  297 (328)
T ss_dssp             CEEECTTCTT---CCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred             CEEECCCCCc---hhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence            9999998888   46788888999999999999999999998753

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.67  E-value=3.7e-16  Score=119.58  Aligned_cols=121  Identities=21%  Similarity=0.245  Sum_probs=104.9

Q ss_pred             ccccceEecCC---------CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEE
Q 037769           64 CSWDGVTCDNV---------TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYL  134 (200)
Q Consensus        64 c~w~gv~c~~~---------~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L  134 (200)
                      |.|..+.|.+.         ...++.|++  ++|.+. .+|.  .+..+++|++|+|++|.+++. .+..|..+++|++|
T Consensus        10 C~~~~l~~~~~~l~~ip~~~~~~l~~L~L--~~n~i~-~ip~--~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L   83 (193)
T 2wfh_A           10 CLDTVVRCSNKGLKVLPKGIPRDVTELYL--DGNQFT-LVPK--ELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTL   83 (193)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCCEEEC--CSSCCC-SCCG--GGGGCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred             eCCCEEEcCCCCCCcCCCCCCCCCCEEEC--CCCcCc-hhHH--HhhcccCCCEEECCCCcCCEe-CHhHccCCCCCCEE
Confidence            56777777542         357899999  999998 7777  899999999999999999986 66789999999999


Q ss_pred             eccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhh-hhcCCCCCCEEecccccCCc
Q 037769          135 NLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDL-LASNLTKLSLLYLGATNMSL  194 (200)
Q Consensus       135 ~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~-~l~~l~~L~~L~Ls~N~l~g  194 (200)
                      +|++|.+++..|..+..+++|++|+|++|+++    .+|. .+..+++|+.|+|++|++..
T Consensus        84 ~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~----~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           84 ILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS----VVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             ECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC----BCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ECCCCccCEeCHHHhCCCCCCCEEECCCCCCC----eeChhhhhcCccccEEEeCCCCeec
Confidence            99999999777778999999999999999995    3444 58899999999999998864

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.66  E-value=4.5e-16  Score=121.32  Aligned_cols=113  Identities=16%  Similarity=0.050  Sum_probs=102.5

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .+++.|++  ++|.+.+..+.  .+.++++|++|+|++|.+++. .+..+..+++|++|+|++|.+++..|..+..+++|
T Consensus        57 ~~L~~L~L--~~N~i~~i~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  131 (220)
T 2v70_A           57 PQLRKINF--SNNKITDIEEG--AFEGASGVNEILLTSNRLENV-QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSV  131 (220)
T ss_dssp             TTCCEEEC--CSSCCCEECTT--TTTTCTTCCEEECCSSCCCCC-CGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTC
T ss_pred             CCCCEEEC--CCCcCCEECHH--HhCCCCCCCEEECCCCccCcc-CHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccC
Confidence            67999999  99999987777  799999999999999999986 66679999999999999999998888999999999


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCC
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIK  196 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~i  196 (200)
                      ++|+|++|+++   ...|..+..+++|+.|+|++|++.+..
T Consensus       132 ~~L~L~~N~l~---~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A          132 RLLSLYDNQIT---TVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             SEEECTTSCCC---CBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             CEEECCCCcCC---EECHHHhcCCCCCCEEEecCcCCcCCC
Confidence            99999999994   445788999999999999999987653

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.66  E-value=3.3e-17  Score=134.13  Aligned_cols=116  Identities=16%  Similarity=0.217  Sum_probs=100.9

Q ss_pred             CcEEEEEcccCC-CCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCC
Q 037769           76 GNVIGLDLYSSC-SWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSK  154 (200)
Q Consensus        76 ~~l~~L~L~~~~-n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~  154 (200)
                      .+++.|++  ++ |.+.+.+|.  .+.++++|++|++++|.+++. +|..+..+++|++|++++|.+++.+|..+..+++
T Consensus        76 ~~L~~L~L--~~~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  150 (313)
T 1ogq_A           76 PYLNFLYI--GGINNLVGPIPP--AIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN  150 (313)
T ss_dssp             TTCSEEEE--EEETTEESCCCG--GGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred             CCCCeeeC--CCCCcccccCCh--hHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCC
Confidence            57889999  85 888888888  889999999999999999877 8888999999999999999999888988999999


Q ss_pred             CCEEeccCCcCCCCCCchhhhhcCCC-CCCEEecccccCCcCCCCC
Q 037769          155 LTHLDLSFCVLTIEHRTFDLLASNLT-KLSLLYLGATNMSLIKPFS  199 (200)
Q Consensus       155 L~~L~Ls~N~l~~~~~~lp~~l~~l~-~L~~L~Ls~N~l~g~iP~~  199 (200)
                      |++|++++|+++   +.+|..+..++ +|++|++++|.++|.+|..
T Consensus       151 L~~L~L~~N~l~---~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~  193 (313)
T 1ogq_A          151 LVGITFDGNRIS---GAIPDSYGSFSKLFTSMTISRNRLTGKIPPT  193 (313)
T ss_dssp             CCEEECCSSCCE---EECCGGGGCCCTTCCEEECCSSEEEEECCGG
T ss_pred             CCeEECcCCccc---CcCCHHHhhhhhcCcEEECcCCeeeccCChH
Confidence            999999999984   56788888887 8899999999888887754

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.65  E-value=3.9e-16  Score=135.88  Aligned_cols=127  Identities=27%  Similarity=0.217  Sum_probs=98.1

Q ss_pred             CccccceEecCC-----------CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCC
Q 037769           63 CCSWDGVTCDNV-----------TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKEL  131 (200)
Q Consensus        63 ~c~w~gv~c~~~-----------~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L  131 (200)
                      .|.|.|+ |+..           ..++++|++  ++|.+.+..+.  .+.++++|++|++++|.+++. .|..+..+++|
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~L--s~n~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L   76 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDL--SFNKITYIGHG--DLRACANLQVLILKSSRINTI-EGDAFYSLGSL   76 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEEC--CSSCCCEECSS--TTSSCTTCCEEECTTSCCCEE-CTTTTTTCTTC
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEEC--cCCccCccChh--hhhcCCcccEEECCCCCcCcc-ChhhccccccC
Confidence            4778777 6521           247889999  99998877777  788899999999999998876 66778888999


Q ss_pred             CEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCC
Q 037769          132 TYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKP  197 (200)
Q Consensus       132 ~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP  197 (200)
                      ++|++++|.+++..|..++.+++|++|++++|.+++  ..+|..++++++|++|++++|.+.+.+|
T Consensus        77 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~~l~~L~~L~L~~n~~~~~~~  140 (549)
T 2z81_A           77 EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT--LGVTSLFPNLTNLQTLRIGNVETFSEIR  140 (549)
T ss_dssp             CEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSS--SCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred             CEEECCCCccCccCHHHhccCCCCcEEECCCCcccc--cchhhhhhccCCccEEECCCCccccccC
Confidence            999999999887666678888899999999888852  1345567777777777777777555555

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.64  E-value=2.1e-15  Score=119.45  Aligned_cols=112  Identities=21%  Similarity=0.168  Sum_probs=75.9

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .+++.|++  ++|.+.+..+.  .+..+++|++|++++|.+++. .+..+..+++|+.|+|++|.+++..+..+..+++|
T Consensus        83 ~~L~~L~L--~~n~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  157 (251)
T 3m19_A           83 TELGTLGL--ANNQLASLPLG--VFDHLTQLDKLYLGGNQLKSL-PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL  157 (251)
T ss_dssp             TTCCEEEC--TTSCCCCCCTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CcCCEEEC--CCCcccccChh--HhcccCCCCEEEcCCCcCCCc-ChhHhccCCcccEEECcCCcCCccCHHHcCcCcCC
Confidence            46777777  77777755555  566777777777777777764 34445677777777777777775444467777777


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcC
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLI  195 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~  195 (200)
                      ++|+|++|+++   ...+..+..+++|++|++++|++.+.
T Consensus       158 ~~L~L~~N~l~---~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          158 QTLSLSTNQLQ---SVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CEEECCSSCCS---CCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CEEECCCCcCC---ccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            77777777773   22334566777777777777777654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.64  E-value=8.4e-16  Score=112.24  Aligned_cols=112  Identities=21%  Similarity=0.176  Sum_probs=96.1

Q ss_pred             CcEEEEEcccCCCCCe-eccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCC
Q 037769           76 GNVIGLDLYSSCSWLV-GTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSK  154 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~-~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~  154 (200)
                      .+++.|++  ++|.+. +.+|.  .+..+++|++|++++|.+++  + ..+..+++|++|++++|.+++.+|..+..+++
T Consensus        17 ~~l~~L~l--~~n~l~~~~~~~--~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~   89 (149)
T 2je0_A           17 SDVKELVL--DNSRSNEGKLEG--LTDEFEELEFLSTINVGLTS--I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN   89 (149)
T ss_dssp             GGCSEEEC--TTCBCBTTBCCS--CCTTCTTCCEEECTTSCCCC--C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred             ccCeEEEc--cCCcCChhHHHH--HHhhcCCCcEEECcCCCCCC--c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence            57899999  999998 78888  78999999999999999986  4 67889999999999999999778888888999


Q ss_pred             CCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCC
Q 037769          155 LTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIK  196 (200)
Q Consensus       155 L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~i  196 (200)
                      |++|++++|++++  ...+..+..+++|++|++++|++++..
T Consensus        90 L~~L~ls~N~i~~--~~~~~~~~~l~~L~~L~l~~N~l~~~~  129 (149)
T 2je0_A           90 LTHLNLSGNKIKD--LSTIEPLKKLENLKSLDLFNCEVTNLN  129 (149)
T ss_dssp             CCEEECTTSCCCS--HHHHGGGGGCTTCCEEECTTCGGGGST
T ss_pred             CCEEECCCCcCCC--hHHHHHHhhCCCCCEEeCcCCcccchH
Confidence            9999999999942  123477899999999999999998643

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.63  E-value=1.3e-15  Score=129.80  Aligned_cols=115  Identities=24%  Similarity=0.224  Sum_probs=88.6

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCC-ChhccCCCCCCEEeccCCcCCCCCcccccCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQL-SPEFGRLKELTYLNLSASNFGGLVPYEMSHSSK  154 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~  154 (200)
                      .++++|++  ++|.+.+..+.  .+.++++|++|++++|.+.+. + +..+..+++|++|++++|.+++..|..++++++
T Consensus        30 ~~l~~L~L--s~n~i~~~~~~--~~~~l~~L~~L~L~~n~~~~~-i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  104 (455)
T 3v47_A           30 AHVNYVDL--SLNSIAELNET--SFSRLQDLQFLKVEQQTPGLV-IRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN  104 (455)
T ss_dssp             TTCCEEEC--CSSCCCEECTT--TTSSCTTCCEEECCCCSTTCE-ECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTT
T ss_pred             CccCEEEe--cCCccCcCChh--HhccCccccEEECcCCcccce-ECcccccccccCCEEeCCCCccCccChhhccCccc
Confidence            56889999  99988877777  788888888888888888754 4 456788888888888888888777778888888


Q ss_pred             CCEEeccCCcCCCCCCchhhh--hcCCCCCCEEecccccCCcCCCC
Q 037769          155 LTHLDLSFCVLTIEHRTFDLL--ASNLTKLSLLYLGATNMSLIKPF  198 (200)
Q Consensus       155 L~~L~Ls~N~l~~~~~~lp~~--l~~l~~L~~L~Ls~N~l~g~iP~  198 (200)
                      |++|++++|+++   +.+|..  ++.+++|++|++++|.+.+..|.
T Consensus       105 L~~L~L~~n~l~---~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  147 (455)
T 3v47_A          105 LEVLTLTQCNLD---GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA  147 (455)
T ss_dssp             CCEEECTTSCCB---THHHHSSTTTTCTTCCEEECCSSBCCSCCCC
T ss_pred             CCEEeCCCCCCC---ccccCcccccCcccCCEEECCCCccCccCcc
Confidence            888888888884   334443  67777777777777777765554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.62  E-value=1.3e-15  Score=133.81  Aligned_cols=112  Identities=21%  Similarity=0.131  Sum_probs=90.0

Q ss_pred             CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCC
Q 037769           75 TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSK  154 (200)
Q Consensus        75 ~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~  154 (200)
                      +..+++|+|  ++|.|++..+.  .|.++++|++|+|++|.+++. .|..|..+++|++|+|++|++++..+..|.++++
T Consensus        51 p~~~~~LdL--s~N~i~~l~~~--~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~  125 (635)
T 4g8a_A           51 PFSTKNLDL--SFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS  125 (635)
T ss_dssp             CTTCCEEEC--TTSCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred             CcCCCEEEe--eCCCCCCCCHH--HHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence            357899999  99999966666  789999999999999999875 5567889999999999999998655567888999


Q ss_pred             CCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769          155 LTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL  194 (200)
Q Consensus       155 L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g  194 (200)
                      |++|+|++|++++   ..+..|+++++|++|++++|.+.+
T Consensus       126 L~~L~Ls~N~l~~---l~~~~~~~L~~L~~L~Ls~N~l~~  162 (635)
T 4g8a_A          126 LQKLVAVETNLAS---LENFPIGHLKTLKELNVAHNLIQS  162 (635)
T ss_dssp             CCEEECTTSCCCC---STTCCCTTCTTCCEEECCSSCCCC
T ss_pred             CCEEECCCCcCCC---CChhhhhcCcccCeeccccCcccc
Confidence            9999999998842   223347777888888888887764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.62  E-value=3.4e-15  Score=116.36  Aligned_cols=111  Identities=21%  Similarity=0.108  Sum_probs=98.5

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .+++.|+|  ++|.+.+..+.  .|.++++|++|+|++|.++.. .+..+..+++|++|+|++|.+++..|..+..+++|
T Consensus        56 ~~L~~L~L--s~N~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  130 (220)
T 2v9t_B           56 KKLRRIDL--SNNQISELAPD--AFQGLRSLNSLVLYGNKITEL-PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNL  130 (220)
T ss_dssp             TTCCEEEC--CSSCCCEECTT--TTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCCEEEC--CCCcCCCcCHH--HhhCCcCCCEEECCCCcCCcc-CHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCC
Confidence            58999999  99999988788  899999999999999999974 44457889999999999999998888899999999


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL  194 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g  194 (200)
                      ++|+|++|+++   ...+..+..+++|+.|+|++|++..
T Consensus       131 ~~L~L~~N~l~---~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B          131 NLLSLYDNKLQ---TIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CEEECCSSCCS---CCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CEEECCCCcCC---EECHHHHhCCCCCCEEEeCCCCcCC
Confidence            99999999995   3334568899999999999998853

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.61  E-value=1.8e-15  Score=112.66  Aligned_cols=115  Identities=24%  Similarity=0.196  Sum_probs=85.6

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCC-CcccccCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGL-VPYEMSHSSK  154 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~P~~l~~l~~  154 (200)
                      .+++.|++  ++|.+.+.  .  .+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++. .+..+..+++
T Consensus        49 ~~L~~L~l--~~n~l~~~--~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~  121 (168)
T 2ell_A           49 VNLEFLSL--INVGLISV--S--NLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLEC  121 (168)
T ss_dssp             GGCCEEEE--ESSCCCCC--S--SCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSC
T ss_pred             CCCCEEeC--cCCCCCCh--h--hhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCC
Confidence            56888888  88888754  4  578888888888888888876 677777788888888888888753 1267788888


Q ss_pred             CCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCC
Q 037769          155 LTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPF  198 (200)
Q Consensus       155 L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~  198 (200)
                      |++|++++|.+++........+..+++|++|++++|.+. .+|.
T Consensus       122 L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          122 LKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             CCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             CCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            888888888884211100136788888888888888877 4664

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.61  E-value=5.5e-15  Score=113.67  Aligned_cols=114  Identities=21%  Similarity=0.209  Sum_probs=94.7

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .++++|++  ++|.+.+..+.  .+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+..+..+++|
T Consensus        52 ~~L~~L~l--~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  126 (208)
T 2o6s_A           52 TSLTQLYL--GGNKLQSLPNG--VFNKLTSLTYLNLSTNQLQSL-PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQL  126 (208)
T ss_dssp             TTCSEEEC--CSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             ccCcEEEC--CCCccCccChh--hcCCCCCcCEEECCCCcCCcc-CHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcC
Confidence            57999999  99999855555  678899999999999999975 45557899999999999999996666668899999


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCC
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKP  197 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP  197 (200)
                      ++|++++|+++   ...+..+..+++|++|++++|.+.+..|
T Consensus       127 ~~L~l~~N~l~---~~~~~~~~~l~~L~~L~l~~N~~~~~~~  165 (208)
T 2o6s_A          127 KDLRLYQNQLK---SVPDGVFDRLTSLQYIWLHDNPWDCTCP  165 (208)
T ss_dssp             CEEECCSSCCS---CCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred             CEEECCCCccc---eeCHHHhccCCCccEEEecCCCeecCCC
Confidence            99999999995   3333457889999999999988877665

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.61  E-value=7.3e-15  Score=117.70  Aligned_cols=111  Identities=26%  Similarity=0.266  Sum_probs=58.6

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .+++.|++  ++|.+.+..+.  .+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+..+..+++|
T Consensus        85 ~~L~~L~L--~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  159 (272)
T 3rfs_A           85 TNLTYLIL--TGNQLQSLPNG--VFDKLTNLKELVLVENQLQSL-PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL  159 (272)
T ss_dssp             TTCCEEEC--TTSCCCCCCTT--TTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCCEEEC--CCCccCccChh--HhcCCcCCCEEECCCCcCCcc-CHHHhccCCCCCEEECCCCccCccCHHHhccCccC
Confidence            35566666  66655544444  455556666666666665543 33335555556666665555554434444555555


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL  194 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g  194 (200)
                      ++|++++|+++   ...+..++.+++|++|++++|++++
T Consensus       160 ~~L~l~~n~l~---~~~~~~~~~l~~L~~L~L~~N~l~~  195 (272)
T 3rfs_A          160 TELDLSYNQLQ---SLPEGVFDKLTQLKDLRLYQNQLKS  195 (272)
T ss_dssp             CEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CEEECCCCCcC---ccCHHHhcCCccCCEEECCCCcCCc
Confidence            55555555553   1222334455555555555555554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.61  E-value=2.6e-15  Score=124.32  Aligned_cols=129  Identities=28%  Similarity=0.308  Sum_probs=96.7

Q ss_pred             CCCCCCCCccccceEecCC-----------CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChh
Q 037769           56 SWTEGTDCCSWDGVTCDNV-----------TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPE  124 (200)
Q Consensus        56 ~W~~~~~~c~w~gv~c~~~-----------~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~  124 (200)
                      .|......|.|.|+ |+..           ..++++|++  ++|.+.+..+.  .+.++++|++|++++|.+++. .|..
T Consensus        22 ~~~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l--~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~   95 (353)
T 2z80_A           22 SSNQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDL--SNNRITYISNS--DLQRCVNLQALVLTSNGINTI-EEDS   95 (353)
T ss_dssp             -----CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEEC--TTSCCCEECTT--TTTTCTTCCEEECTTSCCCEE-CTTT
T ss_pred             CCCccCCCCCCCeE-eeCCCCCcccccccccccCcEEEC--CCCcCcccCHH--HhccCCCCCEEECCCCccCcc-CHhh
Confidence            35455667899887 6421           247899999  99999876665  688899999999999999875 5677


Q ss_pred             ccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhh--hhcCCCCCCEEeccccc-CCc
Q 037769          125 FGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDL--LASNLTKLSLLYLGATN-MSL  194 (200)
Q Consensus       125 l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~--~l~~l~~L~~L~Ls~N~-l~g  194 (200)
                      +..+++|++|++++|.+++..+..+..+++|++|++++|+++    .+|.  .+..+++|++|++++|+ +.+
T Consensus        96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~----~l~~~~~~~~l~~L~~L~l~~n~~~~~  164 (353)
T 2z80_A           96 FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK----TLGETSLFSHLTKLQILRVGNMDTFTK  164 (353)
T ss_dssp             TTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS----SSCSSCSCTTCTTCCEEEEEESSSCCE
T ss_pred             cCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc----ccCchhhhccCCCCcEEECCCCccccc
Confidence            888999999999999998544445888899999999999884    3444  56777888888888874 443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.61  E-value=2.9e-15  Score=131.95  Aligned_cols=117  Identities=21%  Similarity=0.190  Sum_probs=76.6

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .++++|++  ++|.+.+..+.  .|.++++|++|++++|.+++. .|..+..+++|++|++++|.+.+..|..++.+++|
T Consensus        56 ~~L~~L~L--s~n~l~~i~~~--~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  130 (606)
T 3vq2_A           56 SELQWLDL--SRCEIETIEDK--AWHGLHHLSNLILTGNPIQSF-SPGSFSGLTSLENLVAVETKLASLESFPIGQLITL  130 (606)
T ss_dssp             TTCCEEEC--TTCCCCEECTT--TTTTCTTCCEEECTTCCCCCC-CTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTC
T ss_pred             ccCcEEeC--CCCcccccCHH--HhhchhhcCEeECCCCccccc-ChhhcCCcccCCEEEccCCccccccccccCCCCCC
Confidence            35566666  66666655555  566666666666666666654 46666666666666666666665444566666677


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCCC
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFS  199 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~~  199 (200)
                      ++|++++|.+++  ..+|..++++++|++|++++|.+++..|..
T Consensus       131 ~~L~L~~n~l~~--~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~  172 (606)
T 3vq2_A          131 KKLNVAHNFIHS--CKLPAYFSNLTNLVHVDLSYNYIQTITVND  172 (606)
T ss_dssp             CEEECCSSCCCC--CCCCGGGGTCTTCCEEECCSSCCCEECTTT
T ss_pred             CEEeCCCCcccc--eechHhHhhcCCCCEEEccCCcceecChhh
Confidence            777777776641  246777888888888888888887755543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.60  E-value=2.7e-15  Score=125.03  Aligned_cols=123  Identities=24%  Similarity=0.226  Sum_probs=77.6

Q ss_pred             ccccceEecCC---------CCcEEEEEcccCCCCCeeccCCCcccc-CCCCCcEEEccCCCCCCCCCChhccCCCCCCE
Q 037769           64 CSWDGVTCDNV---------TGNVIGLDLYSSCSWLVGTIDDNSTLF-HLSHLQSLNLAYSNFLGSQLSPEFGRLKELTY  133 (200)
Q Consensus        64 c~w~gv~c~~~---------~~~l~~L~L~~~~n~l~~~~p~~~~l~-~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~  133 (200)
                      |.+..+.|...         ...++.|+|  ++|.+.+..+.  .+. ++++|+.|+|++|.+++. .+..|..+++|++
T Consensus        18 C~~~~l~c~~~~l~~iP~~~~~~l~~L~L--s~N~l~~l~~~--~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~   92 (361)
T 2xot_A           18 CASNILSCSKQQLPNVPQSLPSYTALLDL--SHNNLSRLRAE--WTPTRLTNLHSLLLSHNHLNFI-SSEAFVPVPNLRY   92 (361)
T ss_dssp             EETTEEECCSSCCSSCCSSCCTTCSEEEC--CSSCCCEECTT--SSSSCCTTCCEEECCSSCCCEE-CTTTTTTCTTCCE
T ss_pred             ECCCEEEeCCCCcCccCccCCCCCCEEEC--CCCCCCccChh--hhhhcccccCEEECCCCcCCcc-ChhhccCCCCCCE
Confidence            56766777532         234677777  77777755555  455 677777777777777664 4455667777777


Q ss_pred             EeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769          134 LNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL  194 (200)
Q Consensus       134 L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g  194 (200)
                      |+|++|.+++..+..+..+++|++|+|++|+++   ...|..|..+++|+.|+|++|.|++
T Consensus        93 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~---~~~~~~~~~l~~L~~L~L~~N~l~~  150 (361)
T 2xot_A           93 LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV---VVDRNAFEDMAQLQKLYLSQNQISR  150 (361)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCC---EECTTTTTTCTTCCEEECCSSCCCS
T ss_pred             EECCCCcCCcCCHHHhCCCcCCCEEECCCCccc---EECHHHhCCcccCCEEECCCCcCCe
Confidence            777777776544445666677777777777663   2224455566666666666666553

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.60  E-value=9e-15  Score=117.17  Aligned_cols=114  Identities=25%  Similarity=0.225  Sum_probs=99.9

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .+++.|++  ++|.+.+..+.  .+..+++|++|++++|.+++. .+..+..+++|+.|++++|.+++..+..+..+++|
T Consensus       109 ~~L~~L~L--~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  183 (272)
T 3rfs_A          109 TNLKELVL--VENQLQSLPDG--VFDKLTNLTYLNLAHNQLQSL-PKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL  183 (272)
T ss_dssp             TTCCEEEC--TTSCCCCCCTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             cCCCEEEC--CCCcCCccCHH--HhccCCCCCEEECCCCccCcc-CHHHhccCccCCEEECCCCCcCccCHHHhcCCccC
Confidence            67999999  99999976666  689999999999999999985 55667899999999999999997766778999999


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCC
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKP  197 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP  197 (200)
                      ++|++++|+++   +..+..+..+++|++|++++|++.+..|
T Consensus       184 ~~L~L~~N~l~---~~~~~~~~~l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          184 KDLRLYQNQLK---SVPDGVFDRLTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             CEEECCSSCCS---CCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CEEECCCCcCC---ccCHHHHhCCcCCCEEEccCCCccccCc
Confidence            99999999995   3445568999999999999999988766

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.59  E-value=4.2e-15  Score=113.44  Aligned_cols=110  Identities=24%  Similarity=0.240  Sum_probs=94.5

Q ss_pred             EEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCCh-hccCCCCCCEEeccCCcCCCCCcccccCCCCCCE
Q 037769           79 IGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSP-EFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTH  157 (200)
Q Consensus        79 ~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~  157 (200)
                      +.+++  +++.+. .+|.  .+..  .|++|++++|.+++. .+. .+..+++|++|+|++|.+++..|..+.++++|++
T Consensus        11 ~~l~~--s~~~l~-~ip~--~~~~--~l~~L~l~~n~i~~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   82 (192)
T 1w8a_A           11 TTVDC--TGRGLK-EIPR--DIPL--HTTELLLNDNELGRI-SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE   82 (192)
T ss_dssp             TEEEC--TTSCCS-SCCS--CCCT--TCSEEECCSCCCCSB-CCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred             CEEEc--CCCCcC-cCcc--CCCC--CCCEEECCCCcCCcc-CCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCE
Confidence            57899  999986 6776  5543  899999999999874 333 4889999999999999999888999999999999


Q ss_pred             EeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCCC
Q 037769          158 LDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFS  199 (200)
Q Consensus       158 L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~~  199 (200)
                      |+|++|+++   +..+..+..+++|++|+|++|+|++.+|..
T Consensus        83 L~Ls~N~l~---~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  121 (192)
T 1w8a_A           83 LQLGENKIK---EISNKMFLGLHQLKTLNLYDNQISCVMPGS  121 (192)
T ss_dssp             EECCSCCCC---EECSSSSTTCTTCCEEECCSSCCCEECTTS
T ss_pred             EECCCCcCC---ccCHHHhcCCCCCCEEECCCCcCCeeCHHH
Confidence            999999995   334556899999999999999999987764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.59  E-value=1e-14  Score=109.33  Aligned_cols=105  Identities=22%  Similarity=0.165  Sum_probs=82.8

Q ss_pred             EEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEe
Q 037769           80 GLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLD  159 (200)
Q Consensus        80 ~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~  159 (200)
                      .+++  ++|.+. .+|.  .+  .+.|++|+|++|.+++. .|..+..+++|++|+|++|++++..+..+..+++|++|+
T Consensus        13 ~l~~--s~n~l~-~ip~--~~--~~~l~~L~L~~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~   84 (170)
T 3g39_A           13 TVDC--SGKSLA-SVPT--GI--PTTTQVLYLYDNQITKL-EPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS   84 (170)
T ss_dssp             EEEC--TTSCCS-SCCS--CC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             EEEe--CCCCcC-ccCc--cC--CCCCcEEEcCCCcCCcc-ChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEE
Confidence            5667  777777 4665  44  37889999999999886 677788899999999999999865555678889999999


Q ss_pred             ccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcC
Q 037769          160 LSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLI  195 (200)
Q Consensus       160 Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~  195 (200)
                      |++|+++   ...+..+..+++|++|+|++|++...
T Consensus        85 L~~N~l~---~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           85 LNDNQLK---SIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             CCSSCCC---CCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CCCCccC---EeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            9999984   22334588889999999999988754

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.59  E-value=1e-14  Score=128.45  Aligned_cols=117  Identities=19%  Similarity=0.122  Sum_probs=98.8

Q ss_pred             CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCC
Q 037769           75 TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSK  154 (200)
Q Consensus        75 ~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~  154 (200)
                      ..++++|++  ++|.+.+..+.  .+.++++|++|++++|.+++. .|..|..+++|++|++++|.+++..|..++++++
T Consensus        31 ~~~l~~L~L--s~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  105 (606)
T 3vq2_A           31 PSSTKNIDL--SFNPLKILKSY--SFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS  105 (606)
T ss_dssp             CTTCCEEEC--TTSCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred             CCCcCEEEC--CCCCcCEeChh--hccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhhcCCccc
Confidence            357899999  99999877777  788999999999999999876 6778889999999999999999777888999999


Q ss_pred             CCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc-CCCCC
Q 037769          155 LTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL-IKPFS  199 (200)
Q Consensus       155 L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g-~iP~~  199 (200)
                      |++|++++|.++   ...+..++++++|++|++++|.+.+ .+|..
T Consensus       106 L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~  148 (606)
T 3vq2_A          106 LENLVAVETKLA---SLESFPIGQLITLKKLNVAHNFIHSCKLPAY  148 (606)
T ss_dssp             CCEEECTTSCCC---CSSSSCCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred             CCEEEccCCccc---cccccccCCCCCCCEEeCCCCcccceechHh
Confidence            999999999984   2333568899999999999999875 56753

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.58  E-value=1.1e-14  Score=114.10  Aligned_cols=112  Identities=22%  Similarity=0.158  Sum_probs=97.5

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .+++.|+|  ++|.+....+.  .+..+++|++|+|++|.+++. .+..+..+++|+.|+|++|.++ .+|..+..+++|
T Consensus        64 ~~L~~L~L--~~N~l~~i~~~--~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L  137 (229)
T 3e6j_A           64 INLKELYL--GSNQLGALPVG--VFDSLTQLTVLDLGTNQLTVL-PSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHL  137 (229)
T ss_dssp             TTCCEEEC--CSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTC
T ss_pred             cCCcEEEC--CCCCCCCcChh--hcccCCCcCEEECCCCcCCcc-ChhHhCcchhhCeEeccCCccc-ccCcccccCCCC
Confidence            58999999  99999754445  678999999999999999985 5566789999999999999999 889999999999


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCC
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIK  196 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~i  196 (200)
                      ++|+|++|+++   ...+..+..+++|+.|++++|++.+..
T Consensus       138 ~~L~L~~N~l~---~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          138 THLALDQNQLK---SIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             SEEECCSSCCC---CCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             CEEECCCCcCC---ccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            99999999995   223356889999999999999998654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.58  E-value=5.4e-15  Score=129.96  Aligned_cols=116  Identities=24%  Similarity=0.226  Sum_probs=102.1

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .++++|+|  ++|.|.+..+.  .|.++++|++|+|++|.+++. .+..|.++++|++|++++|.+++..+..++++++|
T Consensus        76 ~~L~~L~L--s~N~i~~i~~~--~f~~L~~L~~L~Ls~N~l~~l-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L  150 (635)
T 4g8a_A           76 PELQVLDL--SRCEIQTIEDG--AYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL  150 (635)
T ss_dssp             TTCCEEEC--TTCCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred             CCCCEEEC--CCCcCCCcChh--HhcCCCCCCEEEccCCcCCCC-CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCccc
Confidence            57999999  99999976666  799999999999999999974 44568999999999999999997666679999999


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCC
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPF  198 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~  198 (200)
                      ++|+|++|.+++  ..+|..++.+++|++|++++|++++..|.
T Consensus       151 ~~L~Ls~N~l~~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  191 (635)
T 4g8a_A          151 KELNVAHNLIQS--FKLPEYFSNLTNLEHLDLSSNKIQSIYCT  191 (635)
T ss_dssp             CEEECCSSCCCC--CCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred             CeeccccCcccc--CCCchhhccchhhhhhcccCccccccccc
Confidence            999999999962  35688899999999999999999876554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.58  E-value=1.6e-14  Score=116.14  Aligned_cols=111  Identities=23%  Similarity=0.160  Sum_probs=78.0

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCC-CCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSN-FLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSK  154 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~-l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~  154 (200)
                      .+++.|++  ++|.+.+..+.  .+..+++|++|++++|. +... .|..+..+++|++|++++|.+++..|..+..+++
T Consensus        56 ~~L~~L~l--~~n~l~~~~~~--~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  130 (285)
T 1ozn_A           56 RNLTILWL--HSNVLARIDAA--AFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA  130 (285)
T ss_dssp             TTCCEEEC--CSSCCCEECTT--TTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred             CCCCEEEC--CCCccceeCHh--hcCCccCCCEEeCCCCCCcccc-CHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcC
Confidence            46777777  77777665565  67777777777777776 5553 4666777777777777777777666666777777


Q ss_pred             CCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769          155 LTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL  194 (200)
Q Consensus       155 L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g  194 (200)
                      |++|++++|+++   ...+..++.+++|++|++++|.+++
T Consensus       131 L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~  167 (285)
T 1ozn_A          131 LQYLYLQDNALQ---ALPDDTFRDLGNLTHLFLHGNRISS  167 (285)
T ss_dssp             CCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCEEECCCCccc---ccCHhHhccCCCccEEECCCCcccc
Confidence            777777777773   2223446777788888888887775

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.57  E-value=1.2e-14  Score=116.43  Aligned_cols=115  Identities=24%  Similarity=0.234  Sum_probs=83.5

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .+++.|++  ++|.+.+..+.  .+.++++|++|++++|.+++. .+..+..+++|++|++++|.+.+..+..+..+++|
T Consensus        52 ~~L~~L~l--~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  126 (276)
T 2z62_A           52 PELQVLDL--SRCEIQTIEDG--AYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL  126 (276)
T ss_dssp             TTCSEEEC--TTCCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred             cCCcEEEC--CCCcCCccCHH--HccCCcCCCEEECCCCccCcc-ChhhhcCCccccEEECCCCCccccCchhcccCCCC
Confidence            46777777  77777755555  577777777777777777765 45667777778888887777776555567778888


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCC
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKP  197 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP  197 (200)
                      ++|++++|.+++  ..+|..+..+++|++|++++|++++..|
T Consensus       127 ~~L~l~~n~l~~--~~l~~~~~~l~~L~~L~Ls~N~l~~~~~  166 (276)
T 2z62_A          127 KELNVAHNLIQS--FKLPEYFSNLTNLEHLDLSSNKIQSIYC  166 (276)
T ss_dssp             CEEECCSSCCCC--CCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred             CEEECcCCccce--ecCchhhccCCCCCEEECCCCCCCcCCH
Confidence            888888888742  2367778888888888888888876433

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.57  E-value=1.2e-14  Score=124.80  Aligned_cols=114  Identities=22%  Similarity=0.215  Sum_probs=80.3

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      ..++.|+|  ++|.+.+..+.  .|.++++|++|+|++|.+++. .|..+..+++|++|+|++|.++...+..+.++++|
T Consensus        32 ~~l~~L~L--~~n~l~~~~~~--~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  106 (477)
T 2id5_A           32 TETRLLDL--GKNRIKTLNQD--EFASFPHLEELELNENIVSAV-EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL  106 (477)
T ss_dssp             TTCSEEEC--CSSCCCEECTT--TTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTC
T ss_pred             CCCcEEEC--CCCccceECHh--HccCCCCCCEEECCCCccCEe-ChhhhhCCccCCEEECCCCcCCccCcccccCCCCC
Confidence            46777888  88888766666  677788888888888877765 57777777888888888887774444456777777


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCC
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKP  197 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP  197 (200)
                      ++|+|++|+++   ...|..+..+++|++|++++|.+.+..|
T Consensus       107 ~~L~Ls~n~i~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~  145 (477)
T 2id5_A          107 TKLDISENKIV---ILLDYMFQDLYNLKSLEVGDNDLVYISH  145 (477)
T ss_dssp             CEEECTTSCCC---EECTTTTTTCTTCCEEEECCTTCCEECT
T ss_pred             CEEECCCCccc---cCChhHccccccCCEEECCCCccceeCh
Confidence            77777777773   3344556666666666666666665444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.57  E-value=9.7e-15  Score=124.31  Aligned_cols=115  Identities=23%  Similarity=0.212  Sum_probs=89.8

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .+++.|++  ++|.+.+..+.  .+.++++|++|++++|.+++. .|..+..+++|++|++++|.+++..|..+..+++|
T Consensus       299 ~~L~~L~L--s~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  373 (455)
T 3v47_A          299 TDLEQLTL--AQNEINKIDDN--AFWGLTHLLKLNLSQNFLGSI-DSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNL  373 (455)
T ss_dssp             TTCCEEEC--TTSCCCEECTT--TTTTCTTCCEEECCSSCCCEE-CGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             CCCCEEEC--CCCcccccChh--HhcCcccCCEEECCCCccCCc-ChhHhcCcccCCEEECCCCcccccChhhccccccc
Confidence            46788888  88888877676  677888888888888888765 56777888888888888888887777788888888


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCC
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPF  198 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~  198 (200)
                      ++|+|++|+++   ...+..+..+++|++|++++|++++.+|.
T Consensus       374 ~~L~L~~N~l~---~~~~~~~~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          374 KELALDTNQLK---SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CEEECCSSCCS---CCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             cEEECCCCccc---cCCHhHhccCCcccEEEccCCCcccCCCc
Confidence            88888888884   22233567888888888888888887773

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.56  E-value=9.1e-15  Score=118.60  Aligned_cols=117  Identities=25%  Similarity=0.264  Sum_probs=81.1

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .+++.|++  ++|.+.+..+.  .+..+++|++|++++|.+.+..+|..+..+++|+.|++++|.+++..|..+..+++|
T Consensus       126 ~~L~~L~l--~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  201 (306)
T 2z66_A          126 RNLIYLDI--SHTHTRVAFNG--IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL  201 (306)
T ss_dssp             TTCCEEEC--TTSCCEECSTT--TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             cCCCEEEC--CCCcCCccchh--hcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCC
Confidence            35666666  66666665555  566777777777777777651156667777777777777777776666677777778


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCCC
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFS  199 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~~  199 (200)
                      ++|++++|++++   ..+..+..+++|++|++++|++.+.+|..
T Consensus       202 ~~L~L~~N~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  242 (306)
T 2z66_A          202 QVLNMSHNNFFS---LDTFPYKCLNSLQVLDYSLNHIMTSKKQE  242 (306)
T ss_dssp             CEEECTTSCCSB---CCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred             CEEECCCCccCc---cChhhccCcccCCEeECCCCCCcccCHHH
Confidence            888888877742   22335677788888888888887766643

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.56  E-value=2.4e-15  Score=136.10  Aligned_cols=111  Identities=22%  Similarity=0.210  Sum_probs=99.9

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      ..++.|+|  ++|.+. .++.  .+..+++|++|+|++|.++ . +|..+..+++|++|+|++|.|+ .+|..++.+++|
T Consensus       224 ~~L~~L~L--s~n~l~-~l~~--~~~~l~~L~~L~Ls~N~l~-~-lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L  295 (727)
T 4b8c_D          224 QLWHALDL--SNLQIF-NISA--NIFKYDFLTRLYLNGNSLT-E-LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQL  295 (727)
T ss_dssp             CCCCEEEC--TTSCCS-CCCG--GGGGCCSCSCCBCTTSCCS-C-CCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTC
T ss_pred             CCCcEEEC--CCCCCC-CCCh--hhcCCCCCCEEEeeCCcCc-c-cChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCC
Confidence            46788999  999988 7777  6889999999999999998 4 8999999999999999999999 789999999999


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCC
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPF  198 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~  198 (200)
                      ++|+|++|.+    ..+|..|+.+++|++|+|++|.|+|.+|.
T Consensus       296 ~~L~L~~N~l----~~lp~~~~~l~~L~~L~L~~N~l~~~~p~  334 (727)
T 4b8c_D          296 KYFYFFDNMV----TTLPWEFGNLCNLQFLGVEGNPLEKQFLK  334 (727)
T ss_dssp             SEEECCSSCC----CCCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred             CEEECCCCCC----CccChhhhcCCCccEEeCCCCccCCCChH
Confidence            9999999999    36788899999999999999999987764

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.56  E-value=4.8e-14  Score=114.23  Aligned_cols=113  Identities=24%  Similarity=0.230  Sum_probs=89.8

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .+++.|++  ++|.+. .+|.  .+..+++|++|++++|.+++. .|..+..+++|++|++++|.+++..+..+..+++|
T Consensus        77 ~~L~~L~L--s~N~l~-~l~~--~~~~l~~L~~L~l~~N~l~~l-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  150 (290)
T 1p9a_G           77 PVLGTLDL--SHNQLQ-SLPL--LGQTLPALTVLDVSFNRLTSL-PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL  150 (290)
T ss_dssp             TTCCEEEC--CSSCCS-SCCC--CTTTCTTCCEEECCSSCCCCC-CSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             CcCCEEEC--CCCcCC-cCch--hhccCCCCCEEECCCCcCccc-CHHHHcCCCCCCEEECCCCCCCccChhhcccccCC
Confidence            57888888  888877 6666  678888888999999888875 55678888889999999998886555567788889


Q ss_pred             CEEeccCCcCCCCCCchhh-hhcCCCCCCEEecccccCCcCCCCC
Q 037769          156 THLDLSFCVLTIEHRTFDL-LASNLTKLSLLYLGATNMSLIKPFS  199 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~-~l~~l~~L~~L~Ls~N~l~g~iP~~  199 (200)
                      +.|+|++|+++    .+|. .+..+++|++|+|++|+++ .||..
T Consensus       151 ~~L~L~~N~l~----~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~  190 (290)
T 1p9a_G          151 EKLSLANNNLT----ELPAGLLNGLENLDTLLLQENSLY-TIPKG  190 (290)
T ss_dssp             CEEECTTSCCS----CCCTTTTTTCTTCCEEECCSSCCC-CCCTT
T ss_pred             CEEECCCCcCC----ccCHHHhcCcCCCCEEECCCCcCC-ccChh
Confidence            99999998884    3443 4678888999999999888 57764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.56  E-value=1.8e-15  Score=134.90  Aligned_cols=113  Identities=17%  Similarity=0.206  Sum_probs=105.3

Q ss_pred             CcEEEEEcccCCCCCeec-----------------cCCCcccc--CCCCCcEEEccCCCCCCCCCChhccCCCCCCEEec
Q 037769           76 GNVIGLDLYSSCSWLVGT-----------------IDDNSTLF--HLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNL  136 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~-----------------~p~~~~l~--~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~L  136 (200)
                      .++++|+|  ++|.+.+.                 +|.  .+.  ++++|++|++++|.+.+. +|..+..+++|++|++
T Consensus       206 ~~L~~L~L--s~n~l~~~~~~~~~~~~~~~~~~~~ip~--~l~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L  280 (636)
T 4eco_A          206 TKLRQFYM--GNSPFVAENICEAWENENSEYAQQYKTE--DLKWDNLKDLTDVEVYNCPNLTK-LPTFLKALPEMQLINV  280 (636)
T ss_dssp             TTCCEEEE--ESCCCCGGGBSSSCSCTTSHHHHHHTTS--CCCGGGCTTCCEEEEECCTTCSS-CCTTTTTCSSCCEEEC
T ss_pred             cCCCEEEC--cCCccccccccccccccccchhcccCch--hhhhcccCCCCEEEecCCcCCcc-ChHHHhcCCCCCEEEC
Confidence            68999999  99999985                 888  888  999999999999999998 9999999999999999


Q ss_pred             cCCc-CCC-CCcccccCC------CCCCEEeccCCcCCCCCCchhh--hhcCCCCCCEEecccccCCcCCC
Q 037769          137 SASN-FGG-LVPYEMSHS------SKLTHLDLSFCVLTIEHRTFDL--LASNLTKLSLLYLGATNMSLIKP  197 (200)
Q Consensus       137 s~n~-l~~-~~P~~l~~l------~~L~~L~Ls~N~l~~~~~~lp~--~l~~l~~L~~L~Ls~N~l~g~iP  197 (200)
                      ++|. ++| .+|..++.+      ++|++|++++|+++    .+|.  .++++++|++|++++|.++|.||
T Consensus       281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~----~ip~~~~l~~l~~L~~L~L~~N~l~g~ip  347 (636)
T 4eco_A          281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK----TFPVETSLQKMKKLGMLECLYNQLEGKLP  347 (636)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS----SCCCHHHHTTCTTCCEEECCSCCCEEECC
T ss_pred             cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC----ccCchhhhccCCCCCEEeCcCCcCccchh
Confidence            9998 998 899988876      99999999999993    6888  89999999999999999999998

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.56  E-value=1.3e-14  Score=116.21  Aligned_cols=111  Identities=23%  Similarity=0.196  Sum_probs=71.1

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCC-CCcccccCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGG-LVPYEMSHSSK  154 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~P~~l~~l~~  154 (200)
                      .+++.|++  ++|.+.+..+.  .+.++++|++|++++|.+.+. .+..+..+++|++|++++|.+.+ .+|..+..+++
T Consensus        76 ~~L~~L~L--~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~  150 (276)
T 2z62_A           76 SHLSTLIL--TGNPIQSLALG--AFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN  150 (276)
T ss_dssp             TTCCEEEC--TTCCCCEECTT--TTTTCTTCCEEECTTSCCCCS-TTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT
T ss_pred             cCCCEEEC--CCCccCccChh--hhcCCccccEEECCCCCcccc-CchhcccCCCCCEEECcCCccceecCchhhccCCC
Confidence            46677777  77777665555  567777777777777777664 34456677777777777777764 25666777777


Q ss_pred             CCEEeccCCcCCCCCCchhhhhcCCCCCC----EEecccccCCc
Q 037769          155 LTHLDLSFCVLTIEHRTFDLLASNLTKLS----LLYLGATNMSL  194 (200)
Q Consensus       155 L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~----~L~Ls~N~l~g  194 (200)
                      |++|++++|++++   ..+..+..+++|+    .|++++|.+++
T Consensus       151 L~~L~Ls~N~l~~---~~~~~~~~l~~L~~l~l~L~ls~n~l~~  191 (276)
T 2z62_A          151 LEHLDLSSNKIQS---IYCTDLRVLHQMPLLNLSLDLSLNPMNF  191 (276)
T ss_dssp             CCEEECCSSCCCE---ECGGGGHHHHTCTTCCEEEECCSSCCCE
T ss_pred             CCEEECCCCCCCc---CCHHHhhhhhhccccceeeecCCCcccc
Confidence            7777777777742   2223343333333    67777777765

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.56  E-value=2.8e-14  Score=107.36  Aligned_cols=104  Identities=18%  Similarity=0.163  Sum_probs=87.9

Q ss_pred             EEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEE
Q 037769           79 IGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHL  158 (200)
Q Consensus        79 ~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L  158 (200)
                      +.+++  ++|.+. .+|.  .+.  +.|++|+|++|.+++. .|..+..+++|++|+|++|++++..+..+..+++|++|
T Consensus        15 ~~l~~--~~n~l~-~iP~--~~~--~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L   86 (174)
T 2r9u_A           15 TLVNC--QNIRLA-SVPA--GIP--TDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQL   86 (174)
T ss_dssp             SEEEC--CSSCCS-SCCS--CCC--TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cEEEe--CCCCCC-ccCC--CcC--CCCcEEEeCCCCcccc-CHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEE
Confidence            47888  888886 6776  553  8899999999999986 68889999999999999999996544557899999999


Q ss_pred             eccCCcCCCCCCchhh-hhcCCCCCCEEecccccCCc
Q 037769          159 DLSFCVLTIEHRTFDL-LASNLTKLSLLYLGATNMSL  194 (200)
Q Consensus       159 ~Ls~N~l~~~~~~lp~-~l~~l~~L~~L~Ls~N~l~g  194 (200)
                      +|++|+++    .+|. .+..+++|++|+|++|++..
T Consensus        87 ~L~~N~l~----~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           87 DLNDNHLK----SIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             ECCSSCCC----CCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             ECCCCccc----eeCHHHhccccCCCEEEeCCCCccc
Confidence            99999994    3444 48899999999999999874

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.55  E-value=4.4e-14  Score=113.55  Aligned_cols=115  Identities=23%  Similarity=0.217  Sum_probs=95.9

Q ss_pred             CcEEEEEcccCCCC-CeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCC
Q 037769           76 GNVIGLDLYSSCSW-LVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSK  154 (200)
Q Consensus        76 ~~l~~L~L~~~~n~-l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~  154 (200)
                      .+++.|++  ++|. +....+.  .+..+++|++|++++|.+++. .|..+..+++|++|++++|.+++..+..+..+++
T Consensus        80 ~~L~~L~l--~~n~~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  154 (285)
T 1ozn_A           80 ALLEQLDL--SDNAQLRSVDPA--TFHGLGRLHTLHLDRCGLQEL-GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN  154 (285)
T ss_dssp             TTCCEEEC--CSCTTCCCCCTT--TTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             cCCCEEeC--CCCCCccccCHH--HhcCCcCCCEEECCCCcCCEE-CHhHhhCCcCCCEEECCCCcccccCHhHhccCCC
Confidence            57899999  9997 6655566  788899999999999999886 6777888999999999999998665566888999


Q ss_pred             CCEEeccCCcCCCCCCchhh-hhcCCCCCCEEecccccCCcCCCCC
Q 037769          155 LTHLDLSFCVLTIEHRTFDL-LASNLTKLSLLYLGATNMSLIKPFS  199 (200)
Q Consensus       155 L~~L~Ls~N~l~~~~~~lp~-~l~~l~~L~~L~Ls~N~l~g~iP~~  199 (200)
                      |++|++++|+++    .+|. .+..+++|++|++++|.+++.+|..
T Consensus       155 L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  196 (285)
T 1ozn_A          155 LTHLFLHGNRIS----SVPERAFRGLHSLDRLLLHQNRVAHVHPHA  196 (285)
T ss_dssp             CCEEECCSSCCC----EECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             ccEEECCCCccc----ccCHHHhcCccccCEEECCCCcccccCHhH
Confidence            999999999984    3443 5888999999999999998876754

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.55  E-value=5.8e-14  Score=112.22  Aligned_cols=111  Identities=23%  Similarity=0.177  Sum_probs=68.3

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .+++.|++  ++|.+.+..+.  .+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..+..+..+++|
T Consensus        85 ~~L~~L~l--~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  159 (270)
T 2o6q_A           85 KNLETLWV--TDNKLQALPIG--VFDQLVNLAELRLDRNQLKSL-PPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL  159 (270)
T ss_dssp             TTCCEEEC--CSSCCCCCCTT--TTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCCEEEC--CCCcCCcCCHh--HcccccCCCEEECCCCccCee-CHHHhCcCcCCCEEECCCCcCCccCHhHccCCccc
Confidence            45666666  66666644444  456666666666666666654 44455666667777777776664433446666677


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL  194 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g  194 (200)
                      +.|+|++|+++   ...+..+..+++|++|++++|++++
T Consensus       160 ~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~N~l~~  195 (270)
T 2o6q_A          160 KELRLYNNQLK---RVPEGAFDKLTELKTLKLDNNQLKR  195 (270)
T ss_dssp             CEEECCSSCCS---CCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             ceeEecCCcCc---EeChhHhccCCCcCEEECCCCcCCc
Confidence            77777777663   2223346666777777777777664

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.54  E-value=3e-14  Score=125.50  Aligned_cols=112  Identities=21%  Similarity=0.175  Sum_probs=94.6

Q ss_pred             CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCC
Q 037769           75 TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSK  154 (200)
Q Consensus        75 ~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~  154 (200)
                      +..++.|++  ++|.+++..+.  .+.++++|++|++++|.+.+. .|..|..+++|++|++++|.+.+..|..++++++
T Consensus        32 ~~~l~~L~L--s~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  106 (606)
T 3t6q_A           32 PNSTECLEF--SFNVLPTIQNT--TFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA  106 (606)
T ss_dssp             CTTCCEEEC--TTCCCSEECTT--TSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTT
T ss_pred             CCcCcEEEc--cCCccCcCChh--HhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccChhhhccccc
Confidence            357899999  99999877777  789999999999999999876 7888899999999999999998777888889999


Q ss_pred             CCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769          155 LTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL  194 (200)
Q Consensus       155 L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g  194 (200)
                      |++|++++|.++   ..-|..++++++|++|++++|.+.+
T Consensus       107 L~~L~L~~n~i~---~l~~~~~~~l~~L~~L~L~~n~l~~  143 (606)
T 3t6q_A          107 LKHLFFIQTGIS---SIDFIPLHNQKTLESLYLGSNHISS  143 (606)
T ss_dssp             CCEEECTTSCCS---CGGGSCCTTCTTCCEEECCSSCCCC
T ss_pred             ccEeeccccCcc---cCCcchhccCCcccEEECCCCcccc
Confidence            999999999884   2235567888888888888888876

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.54  E-value=1.8e-14  Score=107.11  Aligned_cols=112  Identities=22%  Similarity=0.159  Sum_probs=98.6

Q ss_pred             CcEEEEEcccCCCCCe-eccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCC
Q 037769           76 GNVIGLDLYSSCSWLV-GTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSK  154 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~-~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~  154 (200)
                      .+++.|++  ++|.+. +.+|.  .+..+++|++|++++|.+++  + ..+..+++|++|++++|.+++.+|..+..+++
T Consensus        24 ~~L~~L~l--~~n~l~~~~i~~--~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   96 (168)
T 2ell_A           24 AAVRELVL--DNCKSNDGKIEG--LTAEFVNLEFLSLINVGLIS--V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN   96 (168)
T ss_dssp             TSCSEEEC--CSCBCBTTBCSS--CCGGGGGCCEEEEESSCCCC--C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred             ccCCEEEC--CCCCCChhhHHH--HHHhCCCCCEEeCcCCCCCC--h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence            67999999  999998 78888  78999999999999999986  5 67899999999999999999878888888999


Q ss_pred             CCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCC
Q 037769          155 LTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIK  196 (200)
Q Consensus       155 L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~i  196 (200)
                      |++|++++|++++.  ..+..+..+++|++|++++|++++..
T Consensus        97 L~~L~Ls~N~l~~~--~~~~~l~~l~~L~~L~l~~N~l~~~~  136 (168)
T 2ell_A           97 LTHLNLSGNKLKDI--STLEPLKKLECLKSLDLFNCEVTNLN  136 (168)
T ss_dssp             CCEEECBSSSCCSS--GGGGGGSSCSCCCEEECCSSGGGTST
T ss_pred             CCEEeccCCccCcc--hhHHHHhcCCCCCEEEeeCCcCcchH
Confidence            99999999999521  12267899999999999999998643

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.54  E-value=3.1e-14  Score=127.08  Aligned_cols=114  Identities=20%  Similarity=0.179  Sum_probs=56.9

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .++++|++  ++|.+.+..+.  .+.++++|++|++++|.+++. .|..+..+++|++|++++|.+++..+..++++++|
T Consensus        25 ~~l~~L~L--s~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L   99 (680)
T 1ziw_A           25 TNITVLNL--THNQLRRLPAA--NFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL   99 (680)
T ss_dssp             TTCSEEEC--CSSCCCCCCGG--GGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCcEEEC--CCCCCCCcCHH--HHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhccCCCC
Confidence            34555555  55555544433  455555555555555555554 44455555555555555555553222235555555


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCC
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKP  197 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP  197 (200)
                      ++|++++|+++   ...|..++++++|++|++++|.+++..|
T Consensus       100 ~~L~L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  138 (680)
T 1ziw_A          100 TELHLMSNSIQ---KIKNNPFVKQKNLITLDLSHNGLSSTKL  138 (680)
T ss_dssp             SEEECCSSCCC---CCCSCTTTTCTTCCEEECCSSCCSCCCC
T ss_pred             CEEECCCCccC---ccChhHccccCCCCEEECCCCcccccCc
Confidence            55555555552   1222344455555555555555544333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.54  E-value=1.6e-14  Score=127.67  Aligned_cols=110  Identities=21%  Similarity=0.127  Sum_probs=63.2

Q ss_pred             cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCC
Q 037769           77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT  156 (200)
Q Consensus        77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~  156 (200)
                      +++.|+|  ++|.+.+..+.  .+..+++|++|+|++|.+++. .|..++.+++|++|+|++|.+++..+..++.+++|+
T Consensus        76 ~L~~L~L--~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  150 (597)
T 3oja_B           76 QVELLNL--NDLQIEEIDTY--AFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT  150 (597)
T ss_dssp             CCSEEEC--TTSCCCEECTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCcEEEC--CCCCCCCCChH--HhcCCCCCCEEECCCCcCCCC-CHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCC
Confidence            3455555  55655555554  556666666666666666654 444456666666666666666633333345666666


Q ss_pred             EEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769          157 HLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL  194 (200)
Q Consensus       157 ~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g  194 (200)
                      +|+|++|.++   +..|..++.+++|++|++++|.+++
T Consensus       151 ~L~Ls~N~l~---~~~~~~~~~l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          151 TLSMSNNNLE---RIEDDTFQATTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             EEECCSSCCC---BCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred             EEEeeCCcCC---CCChhhhhcCCcCcEEECcCCCCCC
Confidence            6666666663   2334456666666666666666654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.54  E-value=2.8e-14  Score=125.86  Aligned_cols=108  Identities=21%  Similarity=0.199  Sum_probs=97.6

Q ss_pred             cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCC
Q 037769           77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT  156 (200)
Q Consensus        77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~  156 (200)
                      .++.|++  ++|.+++ +|.   +..+++|+.|+|++|.++ . +|..++.+++|+.|+|++|.+++ +| .++.+++|+
T Consensus       442 ~L~~L~L--s~n~l~~-lp~---~~~l~~L~~L~Ls~N~l~-~-lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~  511 (567)
T 1dce_A          442 DVRVLHL--AHKDLTV-LCH---LEQLLLVTHLDLSHNRLR-A-LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQ  511 (567)
T ss_dssp             TCSEEEC--TTSCCSS-CCC---GGGGTTCCEEECCSSCCC-C-CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCC
T ss_pred             CceEEEe--cCCCCCC-CcC---ccccccCcEeecCccccc-c-cchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCc
Confidence            5788999  9999985 664   899999999999999999 4 89999999999999999999996 77 899999999


Q ss_pred             EEeccCCcCCCCCCch-hhhhcCCCCCCEEecccccCCcCCC
Q 037769          157 HLDLSFCVLTIEHRTF-DLLASNLTKLSLLYLGATNMSLIKP  197 (200)
Q Consensus       157 ~L~Ls~N~l~~~~~~l-p~~l~~l~~L~~L~Ls~N~l~g~iP  197 (200)
                      .|+|++|+++   +.. |..++.+++|+.|+|++|++++.+|
T Consensus       512 ~L~Ls~N~l~---~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          512 ELLLCNNRLQ---QSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             EEECCSSCCC---SSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             EEECCCCCCC---CCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            9999999995   333 8899999999999999999998655

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.54  E-value=1e-14  Score=118.29  Aligned_cols=126  Identities=20%  Similarity=0.184  Sum_probs=79.7

Q ss_pred             ccccceEecCC---------CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCC-CChhccCCCCCCE
Q 037769           64 CSWDGVTCDNV---------TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQ-LSPEFGRLKELTY  133 (200)
Q Consensus        64 c~w~gv~c~~~---------~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~-~p~~l~~l~~L~~  133 (200)
                      |.|.++.|...         ..++++|++  ++|.+....+.  .+.++++|++|++++|.++... .+..+..+++|++
T Consensus         7 C~~~~l~c~~~~l~~ip~~~~~~l~~L~L--~~n~l~~i~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~   82 (306)
T 2z66_A            7 CSGTEIRCNSKGLTSVPTGIPSSATRLEL--ESNKLQSLPHG--VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY   82 (306)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCCEEEC--CSSCCCCCCTT--TTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCE
T ss_pred             eCCCEEEcCCCCcccCCCCCCCCCCEEEC--CCCccCccCHh--HhhccccCCEEECCCCccCcccCcccccccccccCE
Confidence            78999999652         247899999  99998843333  5788899999999988886320 2455556667777


Q ss_pred             EeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCC
Q 037769          134 LNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIK  196 (200)
Q Consensus       134 L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~i  196 (200)
                      |++++|.+. .+|..+..+++|++|++++|++++.  .....+..+++|++|++++|.+.+.+
T Consensus        83 L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~  142 (306)
T 2z66_A           83 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQM--SEFSVFLSLRNLIYLDISHTHTRVAF  142 (306)
T ss_dssp             EECCSCSEE-EEEEEEETCTTCCEEECTTSEEESS--TTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred             EECCCCccc-cChhhcCCCCCCCEEECCCCccccc--ccchhhhhccCCCEEECCCCcCCccc
Confidence            777777666 4555566666666666666666321  00123445555555555555554433

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.53  E-value=9.4e-14  Score=106.12  Aligned_cols=107  Identities=23%  Similarity=0.226  Sum_probs=92.8

Q ss_pred             EEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEE
Q 037769           79 IGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHL  158 (200)
Q Consensus        79 ~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L  158 (200)
                      +.+++  +++.+. .+|.  .+  .+.|++|++++|.++.  +|..+..+++|+.|+|++|.+++..+..|.++++|++|
T Consensus        13 ~~l~~--~~~~l~-~ip~--~~--~~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L   83 (193)
T 2wfh_A           13 TVVRC--SNKGLK-VLPK--GI--PRDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTL   83 (193)
T ss_dssp             TEEEC--TTSCCS-SCCS--CC--CTTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CEEEc--CCCCCC-cCCC--CC--CCCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEE
Confidence            46889  999988 6776  44  3689999999999985  78999999999999999999997777789999999999


Q ss_pred             eccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCC
Q 037769          159 DLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPF  198 (200)
Q Consensus       159 ~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~  198 (200)
                      +|++|+++   ...|..|..+++|++|+|++|.|++ +|.
T Consensus        84 ~Ls~N~l~---~i~~~~f~~l~~L~~L~L~~N~l~~-~~~  119 (193)
T 2wfh_A           84 ILSYNRLR---CIPPRTFDGLKSLRLLSLHGNDISV-VPE  119 (193)
T ss_dssp             ECCSSCCC---BCCTTTTTTCTTCCEEECCSSCCCB-CCT
T ss_pred             ECCCCccC---EeCHHHhCCCCCCCEEECCCCCCCe-eCh
Confidence            99999995   3345679999999999999999995 554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.53  E-value=3.7e-14  Score=118.08  Aligned_cols=112  Identities=22%  Similarity=0.212  Sum_probs=97.4

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .+++.|+|  ++|.+.+..+.  .|.++++|++|+|++|.++.. .+..+..+++|+.|+|++|.+.+..|..+..+++|
T Consensus        64 ~~L~~L~L--~~N~i~~i~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L  138 (361)
T 2xot_A           64 TNLHSLLL--SHNHLNFISSE--AFVPVPNLRYLDLSSNHLHTL-DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQL  138 (361)
T ss_dssp             TTCCEEEC--CSSCCCEECTT--TTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             cccCEEEC--CCCcCCccChh--hccCCCCCCEEECCCCcCCcC-CHHHhCCCcCCCEEECCCCcccEECHHHhCCcccC
Confidence            68999999  99999977777  799999999999999999875 55678999999999999999997778899999999


Q ss_pred             CEEeccCCcCCCCCCchhhhh----cCCCCCCEEecccccCCcCCC
Q 037769          156 THLDLSFCVLTIEHRTFDLLA----SNLTKLSLLYLGATNMSLIKP  197 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l----~~l~~L~~L~Ls~N~l~g~iP  197 (200)
                      +.|+|++|+++    .+|..+    ..+++|+.|+|++|+|++ +|
T Consensus       139 ~~L~L~~N~l~----~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~  179 (361)
T 2xot_A          139 QKLYLSQNQIS----RFPVELIKDGNKLPKLMLLDLSSNKLKK-LP  179 (361)
T ss_dssp             CEEECCSSCCC----SCCGGGTC----CTTCCEEECCSSCCCC-CC
T ss_pred             CEEECCCCcCC----eeCHHHhcCcccCCcCCEEECCCCCCCc-cC
Confidence            99999999995    355543    679999999999999985 55

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.53  E-value=6.4e-15  Score=133.34  Aligned_cols=159  Identities=18%  Similarity=0.183  Sum_probs=97.7

Q ss_pred             CCCHHHHHHHHHHHHhcCCCCCCcccCcCCCCCCCCCCCCC-CCCCccccceEecCCCCcEEEEEccc------------
Q 037769           19 SCPPEQSLALLQFKNNTYVRSANYSFCNEENSSPKTNSWTE-GTDCCSWDGVTCDNVTGNVIGLDLYS------------   85 (200)
Q Consensus        19 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~-~~~~c~w~gv~c~~~~~~l~~L~L~~------------   85 (200)
                      +....++.++++++....+. ..          .....|.. ......|.++.+..  ++++.|+|..            
T Consensus       128 s~~~~~~~~l~~~~~~~~~~-~~----------~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~~~~~l~  194 (727)
T 4b8c_D          128 SLVDCTKQALMEMADTLTDS-KT----------AKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDEANQALLQ  194 (727)
T ss_dssp             ----CCCHHHHHHHHHHHHH-HT----------TC---------------------------------------------
T ss_pred             hccccchhhhhhhhhhcccc-cC----------cccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCcchhhHhh
Confidence            34456678899998877544 21          12334633 34456777766543  2333333300            


Q ss_pred             ----CCCCCee---------ccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCC
Q 037769           86 ----SCSWLVG---------TIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHS  152 (200)
Q Consensus        86 ----~~n~l~~---------~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l  152 (200)
                          +.+.+.+         ..+.  .+..++.|+.|+|++|.+..  +|..+..+++|++|+|++|.++ .+|..++.+
T Consensus       195 ~l~Ls~~~i~~~~~~~n~~~~~~~--~~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l  269 (727)
T 4b8c_D          195 HKKLSQYSIDEDDDIENRMVMPKD--SKYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNL  269 (727)
T ss_dssp             -----------------------------CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGG
T ss_pred             cCccCcccccCccccccceecChh--hhccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcCc-ccChhhhCC
Confidence                3443332         2244  67889999999999999984  8888889999999999999999 899999999


Q ss_pred             CCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCCCC
Q 037769          153 SKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFSL  200 (200)
Q Consensus       153 ~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~~~  200 (200)
                      ++|++|+|++|.|+    .+|..+++|++|++|+|++|.|+ .||.+|
T Consensus       270 ~~L~~L~Ls~N~l~----~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~  312 (727)
T 4b8c_D          270 SNLRVLDLSHNRLT----SLPAELGSCFQLKYFYFFDNMVT-TLPWEF  312 (727)
T ss_dssp             TTCCEEECTTSCCS----SCCSSGGGGTTCSEEECCSSCCC-CCCSST
T ss_pred             CCCCEEeCcCCcCC----ccChhhcCCCCCCEEECCCCCCC-ccChhh
Confidence            99999999999994    67999999999999999999997 788754

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.52  E-value=2.5e-14  Score=131.16  Aligned_cols=96  Identities=21%  Similarity=0.175  Sum_probs=50.1

Q ss_pred             cccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCccc--ccCCCCCCEEeccCCcCCCCCCchhhhh
Q 037769           99 TLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYE--MSHSSKLTHLDLSFCVLTIEHRTFDLLA  176 (200)
Q Consensus        99 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~--l~~l~~L~~L~Ls~N~l~~~~~~lp~~l  176 (200)
                      .+.++++|++|+|++|.+.+. .|..+..+++|++|+|++|.+++.+|..  +..+++|++|+|++|.+++  ...+..+
T Consensus        68 ~f~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~--~~~~~~~  144 (844)
T 3j0a_A           68 AFRNLPNLRILDLGSSKIYFL-HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS--LYLHPSF  144 (844)
T ss_dssp             TTSSCTTCCEEECTTCCCCEE-CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCC--CCCCGGG
T ss_pred             HhcCCCCCCEEECCCCcCccc-CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccc--cccchhH
Confidence            345555555555555555543 4555555555555555555555444433  5555555555555555531  1122345


Q ss_pred             cCCCCCCEEecccccCCcCCC
Q 037769          177 SNLTKLSLLYLGATNMSLIKP  197 (200)
Q Consensus       177 ~~l~~L~~L~Ls~N~l~g~iP  197 (200)
                      +++++|++|+|++|.+++..|
T Consensus       145 ~~L~~L~~L~Ls~N~i~~~~~  165 (844)
T 3j0a_A          145 GKLNSLKSIDFSSNQIFLVCE  165 (844)
T ss_dssp             GTCSSCCEEEEESSCCCCCCS
T ss_pred             hhCCCCCEEECCCCcCCeeCH
Confidence            666666666666666655444

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.52  E-value=2.8e-14  Score=119.49  Aligned_cols=109  Identities=21%  Similarity=0.158  Sum_probs=56.7

Q ss_pred             cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCccc-ccCCCCC
Q 037769           77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYE-MSHSSKL  155 (200)
Q Consensus        77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~-l~~l~~L  155 (200)
                      ++++|++  ++|.+.+..+.  .+..+++|++|++++|.+++. .|..+..+++|++|++++|.++ .+|.. +..+++|
T Consensus        70 ~L~~L~L--~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L  143 (390)
T 3o6n_A           70 QVELLNL--NDLQIEEIDTY--AFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKL  143 (390)
T ss_dssp             CCSEEEC--TTSCCCEECTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred             cCcEEEC--CCCcccccChh--hccCCCCcCEEECCCCCCCcC-CHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCC
Confidence            3444555  55555544443  455555555555555555554 3444555555555555555555 23332 3555555


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL  194 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g  194 (200)
                      ++|++++|.++   ...|..+..+++|++|++++|.+++
T Consensus       144 ~~L~L~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~  179 (390)
T 3o6n_A          144 TTLSMSNNNLE---RIEDDTFQATTSLQNLQLSSNRLTH  179 (390)
T ss_dssp             CEEECCSSCCC---BCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred             cEEECCCCccC---ccChhhccCCCCCCEEECCCCcCCc
Confidence            55555555552   2223345555566666666655553

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.52  E-value=1e-13  Score=113.73  Aligned_cols=119  Identities=20%  Similarity=0.283  Sum_probs=99.4

Q ss_pred             ccccceEecCC---------CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEE
Q 037769           64 CSWDGVTCDNV---------TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYL  134 (200)
Q Consensus        64 c~w~gv~c~~~---------~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L  134 (200)
                      |.|+.+.|...         ..+++.|++  ++|.+.+..+.  .+.++++|++|++++|.+++. .|..+..+++|++|
T Consensus        33 c~l~~l~~~~~~l~~ip~~~~~~l~~L~l--~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L  107 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEISPDTTLLDL--QNNDISELRKD--DFKGLQHLYALVLVNNKISKI-HEKAFSPLRKLQKL  107 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCCCTTCCEEEC--CSSCCCEECTT--TTTTCTTCCEEECCSSCCCEE-CGGGSTTCTTCCEE
T ss_pred             ccCCEEECCCCCccccCCCCCCCCeEEEC--CCCcCCccCHh--HhhCCCCCcEEECCCCccCcc-CHhHhhCcCCCCEE
Confidence            78999998642         247899999  99999977777  799999999999999999986 68889999999999


Q ss_pred             eccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCC
Q 037769          135 NLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMS  193 (200)
Q Consensus       135 ~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~  193 (200)
                      ++++|.+. .+|..+.  ++|++|++++|+++   ...+..+.++++|++|++++|.+.
T Consensus       108 ~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~---~~~~~~~~~l~~L~~L~l~~n~l~  160 (332)
T 2ft3_A          108 YISKNHLV-EIPPNLP--SSLVELRIHDNRIR---KVPKGVFSGLRNMNCIEMGGNPLE  160 (332)
T ss_dssp             ECCSSCCC-SCCSSCC--TTCCEEECCSSCCC---CCCSGGGSSCSSCCEEECCSCCCB
T ss_pred             ECCCCcCC-ccCcccc--ccCCEEECCCCccC---ccCHhHhCCCccCCEEECCCCccc
Confidence            99999998 6776654  78999999999884   223345788888888888888885

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.51  E-value=3.4e-14  Score=108.57  Aligned_cols=105  Identities=17%  Similarity=0.203  Sum_probs=50.5

Q ss_pred             cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCc-CCCCCcccccCCCCC
Q 037769           77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASN-FGGLVPYEMSHSSKL  155 (200)
Q Consensus        77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~P~~l~~l~~L  155 (200)
                      +++.|++  ++|.+.+..+.  .+..+++|++|++++|.+++. .|..+..+++|+.|++++|. +. .+| .+..+++|
T Consensus        89 ~L~~L~l--~~n~l~~~~~~--~l~~l~~L~~L~Ls~n~i~~~-~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L  161 (197)
T 4ezg_A           89 NLERLRI--MGKDVTSDKIP--NLSGLTSLTLLDISHSAHDDS-ILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPEL  161 (197)
T ss_dssp             TCCEEEE--ECTTCBGGGSC--CCTTCTTCCEEECCSSBCBGG-GHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSC
T ss_pred             CCCEEEe--ECCccCcccCh--hhcCCCCCCEEEecCCccCcH-hHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCC
Confidence            4455555  55555444444  455555555555555555543 44445555555555555554 33 333 34455555


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCC
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMS  193 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~  193 (200)
                      ++|++++|.++    .++ .+..+++|++|++++|++.
T Consensus       162 ~~L~l~~n~i~----~~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          162 KSLNIQFDGVH----DYR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CEEECTTBCCC----CCT-TGGGCSSCCEEEECBC---
T ss_pred             CEEECCCCCCc----ChH-HhccCCCCCEEEeeCcccC
Confidence            55555555552    122 3445555555555555544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.50  E-value=7.5e-14  Score=119.32  Aligned_cols=96  Identities=24%  Similarity=0.193  Sum_probs=81.7

Q ss_pred             ccceEecCC---------CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEec
Q 037769           66 WDGVTCDNV---------TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNL  136 (200)
Q Consensus        66 w~gv~c~~~---------~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~L  136 (200)
                      |..|.|.+.         ..+++.|+|  ++|.+.+..+.  .|.++++|++|+|++|.+++. .|..+..+++|++|+|
T Consensus        56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L--~~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L  130 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIPSNTRYLNL--MENNIQMIQAD--TFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLNTLEL  130 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCCTTCSEEEC--CSSCCCEECTT--TTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEEC
T ss_pred             CcEEEECCCCcCccCCCCCCCccEEEC--cCCcCceECHH--HcCCCCCCCEEECCCCccCCc-ChhhccCcccCCEEEC
Confidence            567777542         357899999  99999987777  899999999999999999886 6678899999999999


Q ss_pred             cCCcCCCCCcccccCCCCCCEEeccCCcCC
Q 037769          137 SASNFGGLVPYEMSHSSKLTHLDLSFCVLT  166 (200)
Q Consensus       137 s~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~  166 (200)
                      ++|.+++..+..+..+++|++|+|++|+++
T Consensus       131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  160 (452)
T 3zyi_A          131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIE  160 (452)
T ss_dssp             CSSCCSBCCTTTSSSCTTCCEEECCSCCCC
T ss_pred             CCCcCCccChhhhcccCCCCEEECCCCCcc
Confidence            999999655566888999999999999884

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.50  E-value=3.7e-14  Score=123.40  Aligned_cols=117  Identities=24%  Similarity=0.259  Sum_probs=103.1

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCC-CCcccccCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGG-LVPYEMSHSSK  154 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~P~~l~~l~~  154 (200)
                      .++++|++  ++|.+.+..+.  .+.++++|++|++++|.+++. .|..++.+++|++|++++|.+++ .+|..++++++
T Consensus        50 ~~L~~L~L--s~n~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~  124 (549)
T 2z81_A           50 ANLQVLIL--KSSRINTIEGD--AFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN  124 (549)
T ss_dssp             TTCCEEEC--TTSCCCEECTT--TTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTT
T ss_pred             CcccEEEC--CCCCcCccChh--hccccccCCEEECCCCccCcc-CHHHhccCCCCcEEECCCCcccccchhhhhhccCC
Confidence            68999999  99999988777  899999999999999999986 55669999999999999999986 46778999999


Q ss_pred             CCEEeccCCcCCCCCCchh-hhhcCCCCCCEEecccccCCcCCCCCC
Q 037769          155 LTHLDLSFCVLTIEHRTFD-LLASNLTKLSLLYLGATNMSLIKPFSL  200 (200)
Q Consensus       155 L~~L~Ls~N~l~~~~~~lp-~~l~~l~~L~~L~Ls~N~l~g~iP~~~  200 (200)
                      |++|++++|.+   .+.+| ..+.++++|++|++++|.+++.+|..+
T Consensus       125 L~~L~L~~n~~---~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  168 (549)
T 2z81_A          125 LQTLRIGNVET---FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL  168 (549)
T ss_dssp             CCEEEEEESSS---CCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred             ccEEECCCCcc---ccccCHhhhhcccccCeeeccCCcccccChhhh
Confidence            99999999985   24565 578999999999999999998887653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.50  E-value=1.8e-13  Score=112.17  Aligned_cols=119  Identities=21%  Similarity=0.288  Sum_probs=84.6

Q ss_pred             CccccceEecCC---------CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCE
Q 037769           63 CCSWDGVTCDNV---------TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTY  133 (200)
Q Consensus        63 ~c~w~gv~c~~~---------~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~  133 (200)
                      .|.|+.+.|...         ...++.|++  ++|.+.+..+.  .+.++++|++|++++|.+++. .|..+..+++|++
T Consensus        30 ~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L--~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~  104 (330)
T 1xku_A           30 QCHLRVVQCSDLGLEKVPKDLPPDTALLDL--QNNKITEIKDG--DFKNLKNLHTLILINNKISKI-SPGAFAPLVKLER  104 (330)
T ss_dssp             EEETTEEECTTSCCCSCCCSCCTTCCEEEC--CSSCCCCBCTT--TTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTCCE
T ss_pred             cCCCeEEEecCCCccccCccCCCCCeEEEC--CCCcCCEeChh--hhccCCCCCEEECCCCcCCee-CHHHhcCCCCCCE
Confidence            378998988642         357899999  99999977776  789999999999999999986 6888999999999


Q ss_pred             EeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccC
Q 037769          134 LNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNM  192 (200)
Q Consensus       134 L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l  192 (200)
                      |++++|.++ .+|..+.  ++|++|++++|.++   ...+..+.++++|++|++++|.+
T Consensus       105 L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l  157 (330)
T 1xku_A          105 LYLSKNQLK-ELPEKMP--KTLQELRVHENEIT---KVRKSVFNGLNQMIVVELGTNPL  157 (330)
T ss_dssp             EECCSSCCS-BCCSSCC--TTCCEEECCSSCCC---BBCHHHHTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCC-ccChhhc--ccccEEECCCCccc---ccCHhHhcCCccccEEECCCCcC
Confidence            999999887 5665433  45666666665553   12222344444444444444443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.49  E-value=7.3e-14  Score=120.90  Aligned_cols=123  Identities=18%  Similarity=0.059  Sum_probs=90.6

Q ss_pred             ccccceEecCCCCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhcc-CCCCCCEEeccCCcCC
Q 037769           64 CSWDGVTCDNVTGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFG-RLKELTYLNLSASNFG  142 (200)
Q Consensus        64 c~w~gv~c~~~~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~-~l~~L~~L~Ls~n~l~  142 (200)
                      |.+.++.+... .+++.|++  ++|.+.+..+.  .+..+++|+.|++++|.+++. .|..+. .+++|+.|+|++|.++
T Consensus       109 N~l~~~~~~~l-~~L~~L~L--~~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          109 NNISRVSCSRG-QGKKNIYL--ANNKITMLRDL--DEGCRSRVQYLDLKLNEIDTV-NFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             SCCCCEEECCC-SSCEEEEC--CSSCCCSGGGB--CGGGGSSEEEEECTTSCCCEE-EGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CcCCCCCcccc-CCCCEEEC--CCCCCCCCCch--hhcCCCCCCEEECCCCCCCCc-ChHHHhhhCCcccEEecCCCccc
Confidence            44555656543 57888888  88888877777  788888888888888888876 666665 6788888888888887


Q ss_pred             CCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCCC
Q 037769          143 GLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFS  199 (200)
Q Consensus       143 ~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~~  199 (200)
                      +. |. ...+++|+.|+|++|.++    .+|..+..+++|+.|+|++|.+++ ||..
T Consensus       183 ~~-~~-~~~l~~L~~L~Ls~N~l~----~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~  232 (487)
T 3oja_A          183 DV-KG-QVVFAKLKTLDLSSNKLA----FMGPEFQSAAGVTWISLRNNKLVL-IEKA  232 (487)
T ss_dssp             EE-EC-CCCCTTCCEEECCSSCCC----EECGGGGGGTTCSEEECTTSCCCE-ECTT
T ss_pred             cc-cc-cccCCCCCEEECCCCCCC----CCCHhHcCCCCccEEEecCCcCcc-cchh
Confidence            54 33 345778888888888884    355557777888888888888875 5543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.49  E-value=7.3e-14  Score=121.83  Aligned_cols=115  Identities=27%  Similarity=0.315  Sum_probs=81.6

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCC-CCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFL-GSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSK  154 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~-~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~  154 (200)
                      .+++.|++  ++|.+.+..+.  .+..+++|++|++++|.+. +. +|..+..+++|+.|++++|.+++..|..+..+++
T Consensus       421 ~~L~~L~l--~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~-~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  495 (570)
T 2z63_A          421 RNLIYLDI--SHTHTRVAFNG--IFNGLSSLEVLKMAGNSFQENF-LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS  495 (570)
T ss_dssp             TTCCEEEC--TTSCCEECCTT--TTTTCTTCCEEECTTCEEGGGE-ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             CCCCEEeC--cCCcccccchh--hhhcCCcCcEEECcCCcCcccc-chhhhhcccCCCEEECCCCccccCChhhhhcccC
Confidence            35666666  66666665665  5667777777777777776 33 6667777777777777777777666777777778


Q ss_pred             CCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCC
Q 037769          155 LTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPF  198 (200)
Q Consensus       155 L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~  198 (200)
                      |++|++++|+++   +..|..+..+++|+.|++++|++++.+|.
T Consensus       496 L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          496 LQVLNMASNQLK---SVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             CCEEECCSSCCS---CCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCEEeCCCCcCC---CCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            888888887774   33345577778888888888888777664

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.49  E-value=9.5e-14  Score=121.11  Aligned_cols=115  Identities=24%  Similarity=0.234  Sum_probs=82.8

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .++++|++  ++|.+.+..+.  .+.++++|++|++++|.++.. .|..+..+++|++|++++|.+++..+..++.+++|
T Consensus        52 ~~L~~L~L--s~n~i~~i~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L  126 (570)
T 2z63_A           52 PELQVLDL--SRCEIQTIEDG--AYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL  126 (570)
T ss_dssp             SSCCEEEC--TTCCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred             CCceEEEC--CCCcCCccCcc--cccCchhCCEEeCcCCcCCcc-CHhhhcCccccccccccccccccCCCccccccccc
Confidence            46777777  77777765555  677777788888877777764 45667777788888888777775433457777888


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCC
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKP  197 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP  197 (200)
                      ++|++++|.+++  ..+|..++++++|++|++++|.+++..|
T Consensus       127 ~~L~L~~n~l~~--~~lp~~~~~l~~L~~L~l~~n~l~~~~~  166 (570)
T 2z63_A          127 KELNVAHNLIQS--FKLPEYFSNLTNLEHLDLSSNKIQSIYC  166 (570)
T ss_dssp             CEEECCSSCCCC--CCCCGGGGGCTTCCEEECTTSCCCEECG
T ss_pred             cEEecCCCccce--ecChhhhcccCCCCEEeCcCCccceecH
Confidence            888888887741  2467778888888888888887775443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.47  E-value=6.9e-13  Score=99.40  Aligned_cols=109  Identities=22%  Similarity=0.170  Sum_probs=89.9

Q ss_pred             EEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCE
Q 037769           78 VIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTH  157 (200)
Q Consensus        78 l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~  157 (200)
                      .+.+++  +++.+. .+|.  .+  .++|+.|++++|.+++. .+..+..+++|++|++++|.+++..+..+..+++|++
T Consensus         9 ~~~l~~--~~~~l~-~~p~--~~--~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~   80 (177)
T 2o6r_A            9 GTEIRC--NSKGLT-SVPT--GI--PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTI   80 (177)
T ss_dssp             TTEEEC--CSSCCS-SCCT--TC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCEEEe--cCCCCc-cCCC--CC--CCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcceEeChhHccCCCccCE
Confidence            357888  888887 4555  33  47999999999999975 5556789999999999999999665666899999999


Q ss_pred             EeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCC
Q 037769          158 LDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPF  198 (200)
Q Consensus       158 L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~  198 (200)
                      |++++|+++   ...+..+..+++|++|++++|.+++ +|.
T Consensus        81 L~l~~N~l~---~~~~~~~~~l~~L~~L~l~~N~l~~-~~~  117 (177)
T 2o6r_A           81 LYLHENKLQ---SLPNGVFDKLTQLKELALDTNQLKS-VPD  117 (177)
T ss_dssp             EECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCSC-CCT
T ss_pred             EECCCCCcc---ccCHHHhhCCcccCEEECcCCcceE-eCH
Confidence            999999995   3334457899999999999999985 554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.47  E-value=1.7e-13  Score=104.58  Aligned_cols=107  Identities=19%  Similarity=0.232  Sum_probs=91.1

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .+++.|++  ++|.+. . .+  .+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++..|..+..+++|
T Consensus        66 ~~L~~L~l--~~n~~~-~-~~--~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L  138 (197)
T 4ezg_A           66 HNIKDLTI--NNIHAT-N-YN--PISGLSNLERLRIMGKDVTSD-KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV  138 (197)
T ss_dssp             TTCSEEEE--ESCCCS-C-CG--GGTTCTTCCEEEEECTTCBGG-GSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSC
T ss_pred             CCCCEEEc--cCCCCC-c-ch--hhhcCCCCCEEEeECCccCcc-cChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCC
Confidence            57889999  888664 2 23  588899999999999999876 67788999999999999999997788889999999


Q ss_pred             CEEeccCCc-CCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769          156 THLDLSFCV-LTIEHRTFDLLASNLTKLSLLYLGATNMSL  194 (200)
Q Consensus       156 ~~L~Ls~N~-l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g  194 (200)
                      ++|++++|. +    ..+| .+..+++|++|++++|++++
T Consensus       139 ~~L~L~~n~~i----~~~~-~l~~l~~L~~L~l~~n~i~~  173 (197)
T 4ezg_A          139 NSIDLSYNGAI----TDIM-PLKTLPELKSLNIQFDGVHD  173 (197)
T ss_dssp             CEEECCSCTBC----CCCG-GGGGCSSCCEEECTTBCCCC
T ss_pred             CEEEccCCCCc----cccH-hhcCCCCCCEEECCCCCCcC
Confidence            999999998 5    4555 58889999999999999886

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.47  E-value=2.2e-13  Score=116.04  Aligned_cols=96  Identities=22%  Similarity=0.175  Sum_probs=77.1

Q ss_pred             ccceEecCC---------CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEec
Q 037769           66 WDGVTCDNV---------TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNL  136 (200)
Q Consensus        66 w~gv~c~~~---------~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~L  136 (200)
                      |..|.|...         ...++.|+|  ++|.+.+..+.  .|.++++|++|+|++|.++.. .+..+..+++|++|+|
T Consensus        45 ~~~v~c~~~~l~~iP~~~~~~l~~L~L--~~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGISTNTRLLNL--HENQIQIIKVN--SFKHLRHLEILQLSRNHIRTI-EIGAFNGLANLNTLEL  119 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCCTTCSEEEC--CSCCCCEECTT--TTSSCSSCCEEECCSSCCCEE-CGGGGTTCSSCCEEEC
T ss_pred             CCEEEeCCCCcCcCCCCCCCCCcEEEc--cCCcCCeeCHH--HhhCCCCCCEEECCCCcCCcc-ChhhccCCccCCEEEC
Confidence            567777542         356788999  99999877777  788899999999999998875 5677888899999999


Q ss_pred             cCCcCCCCCcccccCCCCCCEEeccCCcCC
Q 037769          137 SASNFGGLVPYEMSHSSKLTHLDLSFCVLT  166 (200)
Q Consensus       137 s~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~  166 (200)
                      ++|.++...+..+..+++|++|+|++|+++
T Consensus       120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~  149 (440)
T 3zyj_A          120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIE  149 (440)
T ss_dssp             CSSCCSSCCTTTSCSCSSCCEEECCSCCCC
T ss_pred             CCCcCCeeCHhHhhccccCceeeCCCCccc
Confidence            999888555556888888888888888874

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.47  E-value=3.8e-14  Score=115.64  Aligned_cols=115  Identities=19%  Similarity=0.090  Sum_probs=64.6

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCC-----CCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCC--Cccc
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHL-----SHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGL--VPYE  148 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l-----~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~--~P~~  148 (200)
                      .+++.|++  ++|.+.+. |.  .+..+     ++|++|++++|.+.+. .|..+..+++|++|++++|.+.+.  +|..
T Consensus       121 ~~L~~L~L--s~N~l~~~-~~--~~~~l~~~~~~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  194 (312)
T 1wwl_A          121 PDLNILNL--RNVSWATR-DA--WLAELQQWLKPGLKVLSIAQAHSLNF-SCEQVRVFPALSTLDLSDNPELGERGLISA  194 (312)
T ss_dssp             CCCSEEEE--ESCBCSSS-SS--HHHHHHTTCCTTCCEEEEESCSCCCC-CTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred             CCccEEEc--cCCCCcch-hH--HHHHHHHhhcCCCcEEEeeCCCCccc-hHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence            45666666  66666644 44  45544     6666666666666654 445666666666666666666543  2333


Q ss_pred             c--cCCCCCCEEeccCCcCCCCCCchh-hhhcCCCCCCEEecccccCCcCCC
Q 037769          149 M--SHSSKLTHLDLSFCVLTIEHRTFD-LLASNLTKLSLLYLGATNMSLIKP  197 (200)
Q Consensus       149 l--~~l~~L~~L~Ls~N~l~~~~~~lp-~~l~~l~~L~~L~Ls~N~l~g~iP  197 (200)
                      +  ..+++|++|++++|++++. +.++ ..+..+++|++|++++|.+++.+|
T Consensus       195 ~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  245 (312)
T 1wwl_A          195 LCPLKFPTLQVLALRNAGMETP-SGVCSALAAARVQLQGLDLSHNSLRDAAG  245 (312)
T ss_dssp             SCTTSCTTCCEEECTTSCCCCH-HHHHHHHHHTTCCCSEEECTTSCCCSSCC
T ss_pred             HHhccCCCCCEEECCCCcCcch-HHHHHHHHhcCCCCCEEECCCCcCCcccc
Confidence            3  5566666666666666311 1222 223455666666666666665443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.47  E-value=1.9e-13  Score=102.58  Aligned_cols=103  Identities=16%  Similarity=0.108  Sum_probs=59.6

Q ss_pred             cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChh-ccCCCCCCEEeccCCcCCCCCcc--cccCCC
Q 037769           77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPE-FGRLKELTYLNLSASNFGGLVPY--EMSHSS  153 (200)
Q Consensus        77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~P~--~l~~l~  153 (200)
                      +++.|++  ++|.+.+.  +  .+..+++|++|++++|.+++  +|+. +..+++|++|++++|.+. .+|.  .+..++
T Consensus        43 ~L~~L~L--s~N~l~~~--~--~l~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~  113 (176)
T 1a9n_A           43 QFDAIDF--SDNEIRKL--D--GFPLLRRLKTLLVNNNRICR--IGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLK  113 (176)
T ss_dssp             CCSEEEC--CSSCCCEE--C--CCCCCSSCCEEECCSSCCCE--ECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCT
T ss_pred             CCCEEEC--CCCCCCcc--c--ccccCCCCCEEECCCCcccc--cCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCC
Confidence            5666666  66666543  3  45666666666666666654  3322 355666666666666664 4444  555666


Q ss_pred             CCCEEeccCCcCCCCCCchhh----hhcCCCCCCEEecccccC
Q 037769          154 KLTHLDLSFCVLTIEHRTFDL----LASNLTKLSLLYLGATNM  192 (200)
Q Consensus       154 ~L~~L~Ls~N~l~~~~~~lp~----~l~~l~~L~~L~Ls~N~l  192 (200)
                      +|+.|++++|.++    .+|.    .+..+++|++|+++.|.+
T Consensus       114 ~L~~L~l~~N~i~----~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A          114 SLTYLCILRNPVT----NKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             TCCEEECCSSGGG----GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CCCEEEecCCCCC----CcHhHHHHHHHHCCccceeCCCcCCH
Confidence            6666666666663    2333    255666666666666543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.47  E-value=3.5e-13  Score=109.12  Aligned_cols=109  Identities=20%  Similarity=0.072  Sum_probs=96.3

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .+++.|++  ++|.+++..+.  .+..+++|++|++++|.+++. .+..+..+++|+.|+|++|+++...+..+..+++|
T Consensus       100 ~~L~~L~l--~~N~l~~l~~~--~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L  174 (290)
T 1p9a_G          100 PALTVLDV--SFNRLTSLPLG--ALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL  174 (290)
T ss_dssp             TTCCEEEC--CSSCCCCCCSS--TTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTC
T ss_pred             CCCCEEEC--CCCcCcccCHH--HHcCCCCCCEEECCCCCCCcc-ChhhcccccCCCEEECCCCcCCccCHHHhcCcCCC
Confidence            57999999  99999976666  799999999999999999985 55667899999999999999995444567889999


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCC
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMS  193 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~  193 (200)
                      ++|+|++|+++    .+|..+..+.+|+.|+|++|++.
T Consensus       175 ~~L~L~~N~l~----~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          175 DTLLLQENSLY----TIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CEEECCSSCCC----CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CEEECCCCcCC----ccChhhcccccCCeEEeCCCCcc
Confidence            99999999994    67888888899999999999876

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.47  E-value=7.1e-14  Score=109.63  Aligned_cols=108  Identities=15%  Similarity=0.152  Sum_probs=73.3

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCC-CCCCCCChhccCCCCCCEEeccC-CcCCCCCcccccCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSN-FLGSQLSPEFGRLKELTYLNLSA-SNFGGLVPYEMSHSS  153 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~-l~~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~P~~l~~l~  153 (200)
                      ..++.|++  ++|.+++..+.  .+.++++|++|++++|. ++.. .+..+..+++|++|++++ |.+++..+..+.+++
T Consensus        31 ~~l~~L~l--~~n~l~~i~~~--~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~  105 (239)
T 2xwt_C           31 PSTQTLKL--IETHLRTIPSH--AFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP  105 (239)
T ss_dssp             TTCCEEEE--ESCCCSEECTT--TTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECTTSEECCT
T ss_pred             CcccEEEE--eCCcceEECHH--HccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC
Confidence            46788888  88888766555  67778888888888886 6653 334677778888888887 777754445677777


Q ss_pred             CCCEEeccCCcCCCCCCchhhhhcCCCCCC---EEecccc-cCC
Q 037769          154 KLTHLDLSFCVLTIEHRTFDLLASNLTKLS---LLYLGAT-NMS  193 (200)
Q Consensus       154 ~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~---~L~Ls~N-~l~  193 (200)
                      +|++|++++|++++    +|. +..+++|+   +|++++| .+.
T Consensus       106 ~L~~L~l~~n~l~~----lp~-~~~l~~L~~L~~L~l~~N~~l~  144 (239)
T 2xwt_C          106 LLKFLGIFNTGLKM----FPD-LTKVYSTDIFFILEITDNPYMT  144 (239)
T ss_dssp             TCCEEEEEEECCCS----CCC-CTTCCBCCSEEEEEEESCTTCC
T ss_pred             CCCEEeCCCCCCcc----ccc-cccccccccccEEECCCCcchh
Confidence            77777777777742    343 45555555   5555555 454

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.46  E-value=2.6e-13  Score=119.94  Aligned_cols=138  Identities=18%  Similarity=0.104  Sum_probs=108.1

Q ss_pred             CCCCCCCCCCCcc----ccceEecC------C----------CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEcc
Q 037769           53 KTNSWTEGTDCCS----WDGVTCDN------V----------TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLA  112 (200)
Q Consensus        53 ~~~~W~~~~~~c~----w~gv~c~~------~----------~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~  112 (200)
                      .+.+|..+.+||.    |.++.|+.      .          ..+++.+++  +++.+....+.  .+..+++|++|+++
T Consensus         8 ~l~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l--~~~~l~~lp~~--~~~~l~~L~~L~L~   83 (597)
T 3oja_B            8 NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTF--KNSTMRKLPAA--LLDSFRQVELLNLN   83 (597)
T ss_dssp             ---CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEE--SSCEESEECTH--HHHHCCCCSEEECT
T ss_pred             cccCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEe--eCCCCCCcCHH--HHccCCCCcEEECC
Confidence            3567876666663    66555431      0          145788889  88888754444  57889999999999


Q ss_pred             CCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhh-hcCCCCCCEEeccccc
Q 037769          113 YSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLL-ASNLTKLSLLYLGATN  191 (200)
Q Consensus       113 ~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~-l~~l~~L~~L~Ls~N~  191 (200)
                      +|.+++. .|..+..+++|++|+|++|.+++..|..++++++|++|+|++|.++    .+|.. |+++++|++|+|++|.
T Consensus        84 ~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~----~l~~~~~~~l~~L~~L~Ls~N~  158 (597)
T 3oja_B           84 DLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS----SLPRGIFHNTPKLTTLSMSNNN  158 (597)
T ss_dssp             TSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCCCC-ChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC----CCCHHHhccCCCCCEEEeeCCc
Confidence            9999986 6668999999999999999999877778899999999999999994    45544 6899999999999999


Q ss_pred             CCcCCCCC
Q 037769          192 MSLIKPFS  199 (200)
Q Consensus       192 l~g~iP~~  199 (200)
                      +++..|..
T Consensus       159 l~~~~~~~  166 (597)
T 3oja_B          159 LERIEDDT  166 (597)
T ss_dssp             CCBCCTTT
T ss_pred             CCCCChhh
Confidence            99876653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.46  E-value=7.1e-14  Score=121.03  Aligned_cols=107  Identities=23%  Similarity=0.285  Sum_probs=54.3

Q ss_pred             cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCC
Q 037769           77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT  156 (200)
Q Consensus        77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~  156 (200)
                      ++++|++  ++|.+.+..+.  .+.++++|++|++++|.+++. .|..+..+++|++|++++|.++ .+|..  .+++|+
T Consensus        22 ~L~~L~L--s~n~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~   93 (520)
T 2z7x_B           22 KTTILNI--SQNYISELWTS--DILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLK   93 (520)
T ss_dssp             TCSEEEC--CSSCCCCCCHH--HHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCS
T ss_pred             cccEEEC--CCCcccccChh--hccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCcee-ecCcc--ccCCcc
Confidence            4555555  55555544434  455555555555555555543 3445555555555555555555 34443  455555


Q ss_pred             EEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCC
Q 037769          157 HLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMS  193 (200)
Q Consensus       157 ~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~  193 (200)
                      +|+|++|++++  ..+|..++++++|++|++++|.+.
T Consensus        94 ~L~L~~N~l~~--~~~p~~~~~l~~L~~L~L~~n~l~  128 (520)
T 2z7x_B           94 HLDLSFNAFDA--LPICKEFGNMSQLKFLGLSTTHLE  128 (520)
T ss_dssp             EEECCSSCCSS--CCCCGGGGGCTTCCEEEEEESSCC
T ss_pred             EEeccCCcccc--ccchhhhccCCcceEEEecCcccc
Confidence            55555555531  123444555555555555555443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.46  E-value=6.3e-14  Score=114.34  Aligned_cols=112  Identities=21%  Similarity=0.123  Sum_probs=95.2

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccc--cCCCCCcEEEccCCCCCCCCCChhccCC-----CCCCEEeccCCcCCCCCccc
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTL--FHLSHLQSLNLAYSNFLGSQLSPEFGRL-----KELTYLNLSASNFGGLVPYE  148 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l--~~l~~L~~L~L~~n~l~~~~~p~~l~~l-----~~L~~L~Ls~n~l~~~~P~~  148 (200)
                      .++++|++  ++|.+.+.+|.  .+  ..+++|++|++++|.+++  +|..+..+     ++|++|++++|.+.+..|..
T Consensus        95 ~~L~~L~L--~~n~l~~~~~~--~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~  168 (312)
T 1wwl_A           95 SGLQELTL--ENLEVTGTAPP--PLLEATGPDLNILNLRNVSWAT--RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ  168 (312)
T ss_dssp             SCCCEEEE--EEEBCBSCCCC--CSSSCCSCCCSEEEEESCBCSS--SSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTT
T ss_pred             CCccEEEc--cCCcccchhHH--HHHHhcCCCccEEEccCCCCcc--hhHHHHHHHHhhcCCCcEEEeeCCCCccchHHH
Confidence            57899999  99999988888  65  889999999999999987  57777766     89999999999999877789


Q ss_pred             ccCCCCCCEEeccCCcCCCCCCchhhhh--cCCCCCCEEecccccCCc
Q 037769          149 MSHSSKLTHLDLSFCVLTIEHRTFDLLA--SNLTKLSLLYLGATNMSL  194 (200)
Q Consensus       149 l~~l~~L~~L~Ls~N~l~~~~~~lp~~l--~~l~~L~~L~Ls~N~l~g  194 (200)
                      ++.+++|++|++++|++++. ..+|..+  +.+++|++|++++|.+++
T Consensus       169 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~~~~~~l~~L~~L~L~~N~l~~  215 (312)
T 1wwl_A          169 VRVFPALSTLDLSDNPELGE-RGLISALCPLKFPTLQVLALRNAGMET  215 (312)
T ss_dssp             CCCCSSCCEEECCSCTTCHH-HHHHHHSCTTSCTTCCEEECTTSCCCC
T ss_pred             hccCCCCCEEECCCCCcCcc-hHHHHHHHhccCCCCCEEECCCCcCcc
Confidence            99999999999999998421 1145555  889999999999999983

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.46  E-value=1.2e-13  Score=126.56  Aligned_cols=124  Identities=24%  Similarity=0.236  Sum_probs=83.7

Q ss_pred             ccccceEecCCCCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCC-ChhccCCCCCCEEeccCCcCC
Q 037769           64 CSWDGVTCDNVTGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQL-SPEFGRLKELTYLNLSASNFG  142 (200)
Q Consensus        64 c~w~gv~c~~~~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~-p~~l~~l~~L~~L~Ls~n~l~  142 (200)
                      |.|..|.+  ...++++|+|  ++|.+.+..+.  .+.++++|++|++++|.+.+. + |..+..+++|++|+|++|.+.
T Consensus        14 ~~L~~vP~--lp~~l~~LdL--s~N~i~~i~~~--~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L~~L~Ls~N~l~   86 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLL--SFNYIRTVTAS--SFPFLEQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDLGSSKIY   86 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEE--ESCCCCEECSS--SCSSCCSCSEEEECTTCCCCE-ECTTTTSSCTTCCEEECTTCCCC
T ss_pred             CCCCCCCC--CCCCcCEEEC--CCCcCCccChh--HCcccccCeEEeCCCCCCccc-cCHHHhcCCCCCCEEECCCCcCc
Confidence            34555554  2356777777  77777766666  677777777777777755444 4 566777777777777777777


Q ss_pred             CCCcccccCCCCCCEEeccCCcCCCCCCchhhh--hcCCCCCCEEecccccCCcCCC
Q 037769          143 GLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLL--ASNLTKLSLLYLGATNMSLIKP  197 (200)
Q Consensus       143 ~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~--l~~l~~L~~L~Ls~N~l~g~iP  197 (200)
                      +..|..+.++++|++|+|++|.++   +.+|..  ++++++|++|+|++|.+.+..|
T Consensus        87 ~~~p~~~~~l~~L~~L~Ls~n~l~---~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~  140 (844)
T 3j0a_A           87 FLHPDAFQGLFHLFELRLYFCGLS---DAVLKDGYFRNLKALTRLDLSKNQIRSLYL  140 (844)
T ss_dssp             EECTTSSCSCSSCCCEECTTCCCS---SCCSTTCCCSSCSSCCEEEEESCCCCCCCC
T ss_pred             ccCHhHccCCcccCEeeCcCCCCC---cccccCccccccCCCCEEECCCCccccccc
Confidence            666777777777777777777773   333333  6777777777777777766544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.46  E-value=3.7e-13  Score=112.66  Aligned_cols=114  Identities=18%  Similarity=0.092  Sum_probs=92.1

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .+++.+++  +++.+.. +|.. .+..+++|++|++++|.++.. .+..+..+++|++|++++|.+.+..|..+..+++|
T Consensus        45 ~~l~~l~l--~~~~l~~-l~~~-~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  119 (390)
T 3o6n_A           45 NNQKIVTF--KNSTMRK-LPAA-LLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL  119 (390)
T ss_dssp             CCCSEEEE--ESCEESE-ECTH-HHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCceEEEe--cCCchhh-CChh-HhcccccCcEEECCCCccccc-ChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence            46788888  8888774 4441 467889999999999998875 55688899999999999999987777778899999


Q ss_pred             CEEeccCCcCCCCCCchhhh-hcCCCCCCEEecccccCCcCCCC
Q 037769          156 THLDLSFCVLTIEHRTFDLL-ASNLTKLSLLYLGATNMSLIKPF  198 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~-l~~l~~L~~L~Ls~N~l~g~iP~  198 (200)
                      ++|++++|+++    .+|.. +.++++|++|++++|.+.+..|.
T Consensus       120 ~~L~L~~n~l~----~l~~~~~~~l~~L~~L~L~~n~l~~~~~~  159 (390)
T 3o6n_A          120 TVLVLERNDLS----SLPRGIFHNTPKLTTLSMSNNNLERIEDD  159 (390)
T ss_dssp             CEEECCSSCCC----CCCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred             CEEECCCCccC----cCCHHHhcCCCCCcEEECCCCccCccChh
Confidence            99999999884    45554 58899999999999998875554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.46  E-value=3.4e-13  Score=100.91  Aligned_cols=99  Identities=20%  Similarity=0.189  Sum_probs=85.7

Q ss_pred             ccccceEecCC---------CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEE
Q 037769           64 CSWDGVTCDNV---------TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYL  134 (200)
Q Consensus        64 c~w~gv~c~~~---------~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L  134 (200)
                      |.|+.+.|.+.         ...++.|+|  ++|.+.+..+.  .+.++++|++|+|++|.+++. .+..+..+++|++|
T Consensus         9 C~~~~l~~s~n~l~~ip~~~~~~l~~L~L--~~N~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L   83 (170)
T 3g39_A            9 CSGTTVDCSGKSLASVPTGIPTTTQVLYL--YDNQITKLEPG--VFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQL   83 (170)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEEC--CSSCCCCCCTT--TTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred             cCCCEEEeCCCCcCccCccCCCCCcEEEc--CCCcCCccChh--hhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEE
Confidence            67888888542         357899999  99999987787  899999999999999999985 55567899999999


Q ss_pred             eccCCcCCCCCcccccCCCCCCEEeccCCcCCC
Q 037769          135 NLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTI  167 (200)
Q Consensus       135 ~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~  167 (200)
                      +|++|.+++..+..+..+++|++|+|++|.++.
T Consensus        84 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             ECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            999999997666679999999999999999953

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.46  E-value=7.7e-14  Score=101.69  Aligned_cols=107  Identities=23%  Similarity=0.163  Sum_probs=90.6

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCC-CcccccCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGL-VPYEMSHSSK  154 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~P~~l~~l~~  154 (200)
                      .+++.|++  ++|.+.+.  .  .+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++. .+..+..+++
T Consensus        42 ~~L~~L~l--~~n~l~~~--~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~  114 (149)
T 2je0_A           42 EELEFLST--INVGLTSI--A--NLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLEN  114 (149)
T ss_dssp             TTCCEEEC--TTSCCCCC--T--TCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTT
T ss_pred             CCCcEEEC--cCCCCCCc--h--hhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCC
Confidence            68999999  99999865  5  699999999999999999987 788888899999999999999963 3478999999


Q ss_pred             CCEEeccCCcCCCCCCchhhhhcCCCCCCEEeccc
Q 037769          155 LTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGA  189 (200)
Q Consensus       155 L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~  189 (200)
                      |++|++++|.+++........+..+++|++|++++
T Consensus       115 L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          115 LKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999999999532111114689999999999874

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.45  E-value=1.8e-13  Score=119.90  Aligned_cols=109  Identities=26%  Similarity=0.222  Sum_probs=92.8

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .+++.|++  ++|.+.+..+.  .+.++++|++|++++|.+++. .|..+..+++|++|++++|.++ .+|..  .+++|
T Consensus        52 ~~L~~L~L--s~N~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L  123 (562)
T 3a79_B           52 PRTKALSL--SQNSISELRMP--DISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASL  123 (562)
T ss_dssp             TTCCEEEC--CSSCCCCCCGG--GTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTC
T ss_pred             CCcCEEEC--CCCCccccChh--hhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccC
Confidence            57899999  99999877666  789999999999999999886 6788899999999999999998 67776  78999


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL  194 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g  194 (200)
                      ++|++++|++++  ..+|..++++++|++|++++|.+.+
T Consensus       124 ~~L~Ls~N~l~~--l~~p~~~~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          124 RHLDLSFNDFDV--LPVCKEFGNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             SEEECCSSCCSB--CCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred             CEEECCCCCccc--cCchHhhcccCcccEEecCCCcccc
Confidence            999999999852  2456788899999999999998864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.45  E-value=3.9e-14  Score=130.36  Aligned_cols=112  Identities=16%  Similarity=0.145  Sum_probs=95.7

Q ss_pred             CcEEEEEcccCCCCCee-----------------ccCCCcccc--CCCCCcEEEccCCCCCCCCCChhccCCCCCCEEec
Q 037769           76 GNVIGLDLYSSCSWLVG-----------------TIDDNSTLF--HLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNL  136 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~-----------------~~p~~~~l~--~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~L  136 (200)
                      .+++.|+|  ++|.+.+                 .+|+  .+.  ++++|++|+|++|.+.+. +|..+..+++|+.|+|
T Consensus       448 ~~L~~L~L--s~N~Lsg~~i~~~~~~~s~n~~~g~iP~--~l~f~~L~~L~~L~Ls~N~l~~~-iP~~l~~L~~L~~L~L  522 (876)
T 4ecn_A          448 TKLQIIYF--ANSPFTYDNIAVDWEDANSDYAKQYENE--ELSWSNLKDLTDVELYNCPNMTQ-LPDFLYDLPELQSLNI  522 (876)
T ss_dssp             TTCCEEEE--ESCCCCGGGBSSSCSCTTSHHHHHHTTS--CCCGGGCTTCCEEEEESCTTCCS-CCGGGGGCSSCCEEEC
T ss_pred             CCCCEEEC--cCCcCCCCcccccccccccccccccCCh--hhhhccCCCCCEEECcCCCCCcc-ChHHHhCCCCCCEEEC
Confidence            57899999  9999998                 3888  777  999999999999999888 9999999999999999


Q ss_pred             cCCc-CCC-CCcccccCCC-------CCCEEeccCCcCCCCCCchhh--hhcCCCCCCEEecccccCCcCCC
Q 037769          137 SASN-FGG-LVPYEMSHSS-------KLTHLDLSFCVLTIEHRTFDL--LASNLTKLSLLYLGATNMSLIKP  197 (200)
Q Consensus       137 s~n~-l~~-~~P~~l~~l~-------~L~~L~Ls~N~l~~~~~~lp~--~l~~l~~L~~L~Ls~N~l~g~iP  197 (200)
                      ++|. ++| .+|..++.++       +|++|+|++|+++    .+|.  .++++++|+.|+|++|.++ .||
T Consensus       523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~----~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp  589 (876)
T 4ecn_A          523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE----EFPASASLQKMVKLGLLDCVHNKVR-HLE  589 (876)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC----BCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred             cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC----ccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence            9998 887 7887665554       8899999999883    6777  7888888888888888888 677

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.45  E-value=1.4e-13  Score=113.88  Aligned_cols=114  Identities=27%  Similarity=0.309  Sum_probs=96.7

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChh-ccCCCCCCEEeccCCcCCCCCcc--cccCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPE-FGRLKELTYLNLSASNFGGLVPY--EMSHS  152 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~P~--~l~~l  152 (200)
                      .+++.|++  ++|.+.+..+.  .+.++++|++|++++|.+++  +|.. +..+++|++|++++|.+. .+|.  .+..+
T Consensus        76 ~~L~~L~L--~~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l  148 (353)
T 2z80_A           76 VNLQALVL--TSNGINTIEED--SFSSLGSLEHLDLSYNYLSN--LSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHL  148 (353)
T ss_dssp             TTCCEEEC--TTSCCCEECTT--TTTTCTTCCEEECCSSCCSS--CCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTC
T ss_pred             CCCCEEEC--CCCccCccCHh--hcCCCCCCCEEECCCCcCCc--CCHhHhCCCccCCEEECCCCCCc-ccCchhhhccC
Confidence            68999999  99999987777  79999999999999999997  4554 899999999999999998 4555  78899


Q ss_pred             CCCCEEeccCCc-CCCCCCchhhhhcCCCCCCEEecccccCCcCCCCC
Q 037769          153 SKLTHLDLSFCV-LTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFS  199 (200)
Q Consensus       153 ~~L~~L~Ls~N~-l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~~  199 (200)
                      ++|++|++++|+ ++   ...+..+..+++|++|++++|.+.+.+|..
T Consensus       149 ~~L~~L~l~~n~~~~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  193 (353)
T 2z80_A          149 TKLQILRVGNMDTFT---KIQRKDFAGLTFLEELEIDASDLQSYEPKS  193 (353)
T ss_dssp             TTCCEEEEEESSSCC---EECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred             CCCcEEECCCCcccc---ccCHHHccCCCCCCEEECCCCCcCccCHHH
Confidence            999999999995 52   223567888999999999999998876754

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.45  E-value=3.6e-13  Score=111.07  Aligned_cols=106  Identities=21%  Similarity=0.292  Sum_probs=75.1

Q ss_pred             ccccceEecCCCCcEEEEEcccCCC-CCeeccCCCccccCCCCCcEEEccC-CCCCCCCCChhccCCCCCCEEeccCCcC
Q 037769           64 CSWDGVTCDNVTGNVIGLDLYSSCS-WLVGTIDDNSTLFHLSHLQSLNLAY-SNFLGSQLSPEFGRLKELTYLNLSASNF  141 (200)
Q Consensus        64 c~w~gv~c~~~~~~l~~L~L~~~~n-~l~~~~p~~~~l~~l~~L~~L~L~~-n~l~~~~~p~~l~~l~~L~~L~Ls~n~l  141 (200)
                      |.|.+|.|.              ++ +|. .+|.   +..+++|+.|+|++ |.+++. .+..|..+++|+.|+|++|+|
T Consensus         8 C~~~~v~~~--------------~~n~l~-~ip~---l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l   68 (347)
T 2ifg_A            8 HGSSGLRCT--------------RDGALD-SLHH---LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGL   68 (347)
T ss_dssp             SSSSCEECC--------------SSCCCT-TTTT---SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCC
T ss_pred             ccCCEEEcC--------------CCCCCC-ccCC---CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCcc
Confidence            667666664              33 454 3554   66777888888885 888774 446677888888888888888


Q ss_pred             CCCCcccccCCCCCCEEeccCCcCCCCCCchhh-hhcCCCCCCEEecccccCC
Q 037769          142 GGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDL-LASNLTKLSLLYLGATNMS  193 (200)
Q Consensus       142 ~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~-~l~~l~~L~~L~Ls~N~l~  193 (200)
                      ++..|..|.++++|+.|+|++|+|+    .+|. .+..++ |+.|+|.+|++.
T Consensus        69 ~~~~~~~~~~l~~L~~L~l~~N~l~----~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           69 RFVAPDAFHFTPRLSRLNLSFNALE----SLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CEECTTGGGSCSCCCEEECCSSCCS----CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             ceeCHHHhcCCcCCCEEeCCCCccc----eeCHHHcccCC-ceEEEeeCCCcc
Confidence            8777777788888888888888884    2333 344444 888888888775

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.44  E-value=2.6e-13  Score=121.08  Aligned_cols=109  Identities=21%  Similarity=0.186  Sum_probs=49.2

Q ss_pred             cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCC
Q 037769           77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT  156 (200)
Q Consensus        77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~  156 (200)
                      ++++|++  ++|.+.+..|.  .+.++++|++|++++|.++.. .+..+..+++|++|++++|.+.+..|..++++++|+
T Consensus        50 ~L~~L~L--s~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  124 (680)
T 1ziw_A           50 QLTSLDV--GFNTISKLEPE--LCQKLPMLKVLNLQHNELSQL-SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI  124 (680)
T ss_dssp             TCSEEEC--CSSCCCCCCTT--HHHHCTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred             cCcEEEC--CCCccCccCHH--HHhcccCcCEEECCCCccCcc-ChhhhccCCCCCEEECCCCccCccChhHccccCCCC
Confidence            4455555  55554444444  444455555555555544432 122344445555555555544433334444444455


Q ss_pred             EEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCC
Q 037769          157 HLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMS  193 (200)
Q Consensus       157 ~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~  193 (200)
                      +|++++|.++   +..|..++++++|++|++++|.++
T Consensus       125 ~L~Ls~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~  158 (680)
T 1ziw_A          125 TLDLSHNGLS---STKLGTQVQLENLQELLLSNNKIQ  158 (680)
T ss_dssp             EEECCSSCCS---CCCCCSSSCCTTCCEEECCSSCCC
T ss_pred             EEECCCCccc---ccCchhhcccccCCEEEccCCccc
Confidence            5555444442   222333344444444444444443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.44  E-value=2.9e-13  Score=116.14  Aligned_cols=110  Identities=21%  Similarity=0.173  Sum_probs=64.4

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .++++|+|  ++|.+.+..|.  .+.++++|++|+|++|.++.. .+..+..+++|++|+|++|.+.+..|..+..+++|
T Consensus        56 ~~L~~L~L--~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L  130 (477)
T 2id5_A           56 PHLEELEL--NENIVSAVEPG--AFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL  130 (477)
T ss_dssp             TTCCEEEC--TTSCCCEECTT--TTTTCTTCCEEECCSSCCCSC-CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             CCCCEEEC--CCCccCEeChh--hhhCCccCCEEECCCCcCCcc-CcccccCCCCCCEEECCCCccccCChhHccccccC
Confidence            45667777  77766665565  566667777777777666653 33345666666666666666665555556666666


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCC
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMS  193 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~  193 (200)
                      ++|++++|.++   ...+..+..+++|+.|++++|.++
T Consensus       131 ~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~  165 (477)
T 2id5_A          131 KSLEVGDNDLV---YISHRAFSGLNSLEQLTLEKCNLT  165 (477)
T ss_dssp             CEEEECCTTCC---EECTTSSTTCTTCCEEEEESCCCS
T ss_pred             CEEECCCCccc---eeChhhccCCCCCCEEECCCCcCc
Confidence            66666666553   222333444444455554444444

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.43  E-value=2.5e-13  Score=117.56  Aligned_cols=107  Identities=19%  Similarity=0.098  Sum_probs=94.8

Q ss_pred             EEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEE
Q 037769           79 IGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHL  158 (200)
Q Consensus        79 ~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L  158 (200)
                      +.|++  ++|.++ .+|.  .+.  ++|++|++++|.+++. .|..+..+++|++|++++|.+++..|..+..+++|++|
T Consensus         3 ~~l~l--s~n~l~-~ip~--~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L   74 (520)
T 2z7x_B            3 FLVDR--SKNGLI-HVPK--DLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYL   74 (520)
T ss_dssp             CEEEC--TTSCCS-SCCC--SCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEE
T ss_pred             ceEec--CCCCcc-cccc--ccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChHHhhcccCCCEE
Confidence            47899  999999 6777  565  8999999999999986 66789999999999999999998778899999999999


Q ss_pred             eccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc-CCCCC
Q 037769          159 DLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL-IKPFS  199 (200)
Q Consensus       159 ~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g-~iP~~  199 (200)
                      +|++|+++    .+|..  .+++|++|++++|.+++ .+|..
T Consensus        75 ~Ls~N~l~----~lp~~--~l~~L~~L~L~~N~l~~~~~p~~  110 (520)
T 2z7x_B           75 DLSHNKLV----KISCH--PTVNLKHLDLSFNAFDALPICKE  110 (520)
T ss_dssp             ECCSSCCC----EEECC--CCCCCSEEECCSSCCSSCCCCGG
T ss_pred             ecCCCcee----ecCcc--ccCCccEEeccCCccccccchhh
Confidence            99999994    57766  89999999999999987 56653

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.43  E-value=4e-13  Score=118.25  Aligned_cols=86  Identities=22%  Similarity=0.198  Sum_probs=50.3

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCCh-hccCCCCCCEEeccCCcCCCCCcccccCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSP-EFGRLKELTYLNLSASNFGGLVPYEMSHSSK  154 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~  154 (200)
                      .+++.|++  ++|.+.+..+.  .+..+++|++|++++|.+.+. .|. .+..+++|+.|++++|.+.+..|..+..+++
T Consensus       376 ~~L~~L~l--~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  450 (606)
T 3t6q_A          376 SHLQSLNL--SYNEPLSLKTE--AFKECPQLELLDLAFTRLKVK-DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA  450 (606)
T ss_dssp             TTCCEEEC--CSCSCEEECTT--TTTTCTTCSEEECTTCCEECC-TTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT
T ss_pred             CCCCEEEC--CCCcCCcCCHH--HhcCCccCCeEECCCCcCCCc-ccchhhhCcccCCEEECCCCccCCcCHHHHhCCCC
Confidence            45666666  66666655555  556666666666666666554 332 2555666666666666665555555555666


Q ss_pred             CCEEeccCCcCC
Q 037769          155 LTHLDLSFCVLT  166 (200)
Q Consensus       155 L~~L~Ls~N~l~  166 (200)
                      |++|++++|+++
T Consensus       451 L~~L~L~~n~l~  462 (606)
T 3t6q_A          451 LQHLNLQGNHFP  462 (606)
T ss_dssp             CCEEECTTCBCG
T ss_pred             CCEEECCCCCCC
Confidence            666666666553

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.41  E-value=7.8e-13  Score=108.32  Aligned_cols=85  Identities=19%  Similarity=0.206  Sum_probs=47.5

Q ss_pred             CCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCE
Q 037769          105 HLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSL  184 (200)
Q Consensus       105 ~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~  184 (200)
                      +|++|++++|.+++. .|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|+++    .+|..+..+++|++
T Consensus       193 ~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~----~lp~~l~~l~~L~~  267 (330)
T 1xku_A          193 SLTELHLDGNKITKV-DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV----KVPGGLADHKYIQV  267 (330)
T ss_dssp             TCSEEECTTSCCCEE-CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS----SCCTTTTTCSSCCE
T ss_pred             cCCEEECCCCcCCcc-CHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc----cCChhhccCCCcCE
Confidence            344444444444433 3445555666666666666665444445555666666666666662    45555666666666


Q ss_pred             EecccccCCc
Q 037769          185 LYLGATNMSL  194 (200)
Q Consensus       185 L~Ls~N~l~g  194 (200)
                      |++++|+|++
T Consensus       268 L~l~~N~i~~  277 (330)
T 1xku_A          268 VYLHNNNISA  277 (330)
T ss_dssp             EECCSSCCCC
T ss_pred             EECCCCcCCc
Confidence            6666666654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.41  E-value=2.3e-13  Score=102.13  Aligned_cols=109  Identities=17%  Similarity=0.113  Sum_probs=92.0

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCC-CCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLS-HLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSK  154 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~-~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~  154 (200)
                      ..++.|++  ++|.+. .++.   +..+. +|++|++++|.+++  + ..+..+++|++|++++|.+++..+..+..+++
T Consensus        19 ~~L~~L~l--~~n~l~-~i~~---~~~~~~~L~~L~Ls~N~l~~--~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           19 VRDRELDL--RGYKIP-VIEN---LGATLDQFDAIDFSDNEIRK--L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             TSCEEEEC--TTSCCC-SCCC---GGGGTTCCSEEECCSSCCCE--E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             CCceEEEe--eCCCCc-hhHH---hhhcCCCCCEEECCCCCCCc--c-cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            57999999  999998 4554   55555 99999999999986  5 57899999999999999999543344589999


Q ss_pred             CCEEeccCCcCCCCCCchhh--hhcCCCCCCEEecccccCCcCCCC
Q 037769          155 LTHLDLSFCVLTIEHRTFDL--LASNLTKLSLLYLGATNMSLIKPF  198 (200)
Q Consensus       155 L~~L~Ls~N~l~~~~~~lp~--~l~~l~~L~~L~Ls~N~l~g~iP~  198 (200)
                      |++|++++|+++    .+|.  .+..+++|+.|++++|++. .+|.
T Consensus        90 L~~L~L~~N~i~----~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~  130 (176)
T 1a9n_A           90 LTELILTNNSLV----ELGDLDPLASLKSLTYLCILRNPVT-NKKH  130 (176)
T ss_dssp             CCEEECCSCCCC----CGGGGGGGGGCTTCCEEECCSSGGG-GSTT
T ss_pred             CCEEECCCCcCC----cchhhHhhhcCCCCCEEEecCCCCC-CcHh
Confidence            999999999993    5666  7899999999999999998 4554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.39  E-value=1.5e-12  Score=110.83  Aligned_cols=82  Identities=21%  Similarity=0.183  Sum_probs=58.5

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .+++.|+|  ++|.+.+..+.  .|.++++|++|+|++|.++.. .+..+..+++|++|+|++|.+....+..+..+++|
T Consensus        88 ~~L~~L~L--s~n~i~~i~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L  162 (440)
T 3zyj_A           88 RHLEILQL--SRNHIRTIEIG--AFNGLANLNTLELFDNRLTTI-PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSL  162 (440)
T ss_dssp             SSCCEEEC--CSSCCCEECGG--GGTTCSSCCEEECCSSCCSSC-CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred             CCCCEEEC--CCCcCCccChh--hccCCccCCEEECCCCcCCee-CHhHhhccccCceeeCCCCcccccCHHHhhhCccc
Confidence            57888888  88888766656  678888888888888888764 44467778888888888887774434345555555


Q ss_pred             CEEeccC
Q 037769          156 THLDLSF  162 (200)
Q Consensus       156 ~~L~Ls~  162 (200)
                      ++|+|++
T Consensus       163 ~~L~l~~  169 (440)
T 3zyj_A          163 RRLDLGE  169 (440)
T ss_dssp             CEEECCC
T ss_pred             CEeCCCC
Confidence            5555555

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.39  E-value=9.2e-13  Score=107.62  Aligned_cols=106  Identities=19%  Similarity=0.045  Sum_probs=55.1

Q ss_pred             cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhc-cCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEF-GRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      +++.|++  ++|.+.+..+.  .+..+++|++|++++|.+++. .+..+ ..+++|++|++++|.+++ +|. ...+++|
T Consensus       121 ~L~~L~l--~~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~~l~~L~~L~L~~N~l~~-~~~-~~~l~~L  193 (317)
T 3o53_A          121 GKKNIYL--ANNKITMLRDL--DEGCRSRVQYLDLKLNEIDTV-NFAELAASSDTLEHLNLQYNFIYD-VKG-QVVFAKL  193 (317)
T ss_dssp             SCEEEEC--CSSCCCSGGGB--CTGGGSSEEEEECTTSCCCEE-EGGGGGGGTTTCCEEECTTSCCCE-EEC-CCCCTTC
T ss_pred             CCCEEEC--CCCCCCCccch--hhhccCCCCEEECCCCCCCcc-cHHHHhhccCcCCEEECCCCcCcc-ccc-ccccccC
Confidence            4555666  66665544444  455566666666666666553 33333 245555555555555552 222 2235555


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCC
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMS  193 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~  193 (200)
                      ++|+|++|+++    .+|..+..+++|++|++++|+++
T Consensus       194 ~~L~Ls~N~l~----~l~~~~~~l~~L~~L~L~~N~l~  227 (317)
T 3o53_A          194 KTLDLSSNKLA----FMGPEFQSAAGVTWISLRNNKLV  227 (317)
T ss_dssp             CEEECCSSCCC----EECGGGGGGTTCSEEECTTSCCC
T ss_pred             CEEECCCCcCC----cchhhhcccCcccEEECcCCccc
Confidence            55555555552    23344555555555555555555

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.39  E-value=5.1e-13  Score=117.79  Aligned_cols=115  Identities=17%  Similarity=0.271  Sum_probs=77.0

Q ss_pred             CCCCCCCCCc-----cccce-EecCCCCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCC
Q 037769           55 NSWTEGTDCC-----SWDGV-TCDNVTGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRL  128 (200)
Q Consensus        55 ~~W~~~~~~c-----~w~gv-~c~~~~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l  128 (200)
                      ..|..+..+|     .|.|+ .|..  .+++.|++  ++|.+.+ +|.  .+  +++|++|++++|.++.  +|   ..+
T Consensus        34 ~~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~L--s~n~L~~-lp~--~l--~~~L~~L~Ls~N~l~~--ip---~~l   99 (571)
T 3cvr_A           34 DKWEKQALPGENRNEAVSLLKECLI--NQFSELQL--NRLNLSS-LPD--NL--PPQITVLEITQNALIS--LP---ELP   99 (571)
T ss_dssp             HHHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEEC--CSSCCSC-CCS--CC--CTTCSEEECCSSCCSC--CC---CCC
T ss_pred             HHHhccCCccccccchhhhcccccc--CCccEEEe--CCCCCCc-cCH--hH--cCCCCEEECcCCCCcc--cc---ccc
Confidence            3465555667     79999 6764  57899999  9999886 666  45  3778888888888874  66   456


Q ss_pred             CCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769          129 KELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL  194 (200)
Q Consensus       129 ~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g  194 (200)
                      ++|++|++++|.+++ +|. +..  +|++|+|++|++++    +|.   .+++|++|+|++|.|++
T Consensus       100 ~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~----lp~---~l~~L~~L~Ls~N~l~~  154 (571)
T 3cvr_A          100 ASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM----LPE---LPALLEYINADNNQLTM  154 (571)
T ss_dssp             TTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC----CCC---CCTTCCEEECCSSCCSC
T ss_pred             CCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC----CCC---cCccccEEeCCCCccCc
Confidence            777888888877775 665 543  66666666666642    333   34555555555555553

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.39  E-value=2e-13  Score=111.18  Aligned_cols=37  Identities=14%  Similarity=0.025  Sum_probs=20.6

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNF  116 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l  116 (200)
                      .+++.|++  ++|.+.+..+.  .+..+++|++|++++|.+
T Consensus       145 ~~L~~L~L--s~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l  181 (310)
T 4glp_A          145 PGLKVLSI--AQAHSPAFSCE--QVRAFPALTSLDLSDNPG  181 (310)
T ss_dssp             SCCCEEEE--ECCSSCCCCTT--SCCCCTTCCEEECCSCTT
T ss_pred             cCCCEEEe--eCCCcchhhHH--HhccCCCCCEEECCCCCC
Confidence            35556666  66665544444  455555555555555554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.39  E-value=1.2e-12  Score=114.62  Aligned_cols=119  Identities=15%  Similarity=0.113  Sum_probs=75.8

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCC-CChhccCCCCCCEEeccCCcCCCCCccc-ccCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQ-LSPEFGRLKELTYLNLSASNFGGLVPYE-MSHSS  153 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~P~~-l~~l~  153 (200)
                      .+++.|++  ++|.+.+.++.  .+.++++|++|++++|.+++.+ +|..+..+++|+.|++++|.+++.+|.. +..++
T Consensus       353 ~~L~~L~l--~~n~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~  428 (562)
T 3a79_B          353 SSFTFLNF--TQNVFTDSVFQ--GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE  428 (562)
T ss_dssp             CCCCEEEC--CSSCCCTTTTT--TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred             CCceEEEC--CCCccccchhh--hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence            56777777  77777766666  6777777777777777776520 2345667777777777777776545542 44444


Q ss_pred             CCCEEeccCCcCCCC------------------CCchhhhhcCCCCCCEEecccccCCcCCCCC
Q 037769          154 KLTHLDLSFCVLTIE------------------HRTFDLLASNLTKLSLLYLGATNMSLIKPFS  199 (200)
Q Consensus       154 ~L~~L~Ls~N~l~~~------------------~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~~  199 (200)
                      +|++|++++|++++.                  ...+|..+..+++|++|++++|+++ .||..
T Consensus       429 ~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~  491 (562)
T 3a79_B          429 SILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDG  491 (562)
T ss_dssp             TCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCTT
T ss_pred             cCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCHH
Confidence            444444444444210                  0246666667788888888888887 46653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.38  E-value=2e-13  Score=111.20  Aligned_cols=118  Identities=20%  Similarity=0.021  Sum_probs=60.8

Q ss_pred             cEEEEEcccCCCCCeeccCCCccc--cCCCCCcEEEccCCCCCCCCCC----hhccCCCCCCEEeccCCcCCCCCccccc
Q 037769           77 NVIGLDLYSSCSWLVGTIDDNSTL--FHLSHLQSLNLAYSNFLGSQLS----PEFGRLKELTYLNLSASNFGGLVPYEMS  150 (200)
Q Consensus        77 ~l~~L~L~~~~n~l~~~~p~~~~l--~~l~~L~~L~L~~n~l~~~~~p----~~l~~l~~L~~L~Ls~n~l~~~~P~~l~  150 (200)
                      ++++|++  ++|.+.+..|.  .+  ..+++|++|++++|.+++. .+    ..+..+++|++|++++|.+.+..|..+.
T Consensus        92 ~L~~L~l--~~n~l~~~~~~--~~~~~~~~~L~~L~Ls~n~i~~~-~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  166 (310)
T 4glp_A           92 RLKELTL--EDLKITGTMPP--LPLEATGLALSSLRLRNVSWATG-RSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR  166 (310)
T ss_dssp             CCCEEEE--ESCCCBSCCCC--CSSSCCCBCCSSCEEESCCCSST-TSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC
T ss_pred             ceeEEEe--eCCEeccchhh--hhhhccCCCCCEEEeecccccch-hhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc
Confidence            3666666  66666655555  44  4555555555555555443 22    1222344455555555544444444444


Q ss_pred             CCCCCCEEeccCCcCCCC------------------------CCchhh----hhcCCCCCCEEecccccCCcCCCCC
Q 037769          151 HSSKLTHLDLSFCVLTIE------------------------HRTFDL----LASNLTKLSLLYLGATNMSLIKPFS  199 (200)
Q Consensus       151 ~l~~L~~L~Ls~N~l~~~------------------------~~~lp~----~l~~l~~L~~L~Ls~N~l~g~iP~~  199 (200)
                      .+++|++|+|++|++.+.                        ...++.    .++.+++|++|+|++|.+.+.+|..
T Consensus       167 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~  243 (310)
T 4glp_A          167 AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS  243 (310)
T ss_dssp             CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC
T ss_pred             cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh
Confidence            444444444444443210                        012232    2466777888888888887766643

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.38  E-value=2e-12  Score=110.52  Aligned_cols=82  Identities=21%  Similarity=0.158  Sum_probs=63.0

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .+++.|+|  ++|.+.+..+.  .+.++++|++|+|++|.++.. .+..+..+++|++|+|++|.+....+..+..+++|
T Consensus        99 ~~L~~L~L--s~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  173 (452)
T 3zyi_A           99 HHLEVLQL--GRNSIRQIEVG--AFNGLASLNTLELFDNWLTVI-PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL  173 (452)
T ss_dssp             TTCCEEEC--CSSCCCEECTT--TTTTCTTCCEEECCSSCCSBC-CTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred             CCCCEEEC--CCCccCCcChh--hccCcccCCEEECCCCcCCcc-ChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcc
Confidence            57899999  99998877777  788899999999999998875 45558888899999999888874444455555555


Q ss_pred             CEEeccC
Q 037769          156 THLDLSF  162 (200)
Q Consensus       156 ~~L~Ls~  162 (200)
                      +.|++++
T Consensus       174 ~~L~l~~  180 (452)
T 3zyi_A          174 MRLDLGE  180 (452)
T ss_dssp             CEEECCC
T ss_pred             cEEeCCC
Confidence            5555555

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.38  E-value=4.3e-13  Score=105.15  Aligned_cols=111  Identities=14%  Similarity=0.122  Sum_probs=72.1

Q ss_pred             CcEEEEEcccCCCC-CeeccCCCccccCCCCCcEEEccC-CCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCC
Q 037769           76 GNVIGLDLYSSCSW-LVGTIDDNSTLFHLSHLQSLNLAY-SNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSS  153 (200)
Q Consensus        76 ~~l~~L~L~~~~n~-l~~~~p~~~~l~~l~~L~~L~L~~-n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~  153 (200)
                      .+++.|++  ++|. +....+.  .+.++++|++|++++ |.++.. .+..+..+++|++|++++|.+++ +|. +..++
T Consensus        55 ~~L~~L~l--~~n~~l~~i~~~--~f~~l~~L~~L~l~~~n~l~~i-~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~  127 (239)
T 2xwt_C           55 PNISRIYV--SIDVTLQQLESH--SFYNLSKVTHIEIRNTRNLTYI-DPDALKELPLLKFLGIFNTGLKM-FPD-LTKVY  127 (239)
T ss_dssp             TTCCEEEE--ECCSSCCEECTT--TEESCTTCCEEEEEEETTCCEE-CTTSEECCTTCCEEEEEEECCCS-CCC-CTTCC
T ss_pred             CCCcEEeC--CCCCCcceeCHh--HcCCCcCCcEEECCCCCCeeEc-CHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccc
Confidence            46777777  7775 6644444  567777777777776 777653 34556677777777777777764 555 66666


Q ss_pred             CCC---EEeccCC-cCCCCCCchh-hhhcCCCCCC-EEecccccCCcCCCC
Q 037769          154 KLT---HLDLSFC-VLTIEHRTFD-LLASNLTKLS-LLYLGATNMSLIKPF  198 (200)
Q Consensus       154 ~L~---~L~Ls~N-~l~~~~~~lp-~~l~~l~~L~-~L~Ls~N~l~g~iP~  198 (200)
                      +|+   +|++++| .++    .+| ..+..+++|+ +|++++|+++ .||.
T Consensus       128 ~L~~L~~L~l~~N~~l~----~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~  173 (239)
T 2xwt_C          128 STDIFFILEITDNPYMT----SIPVNAFQGLCNETLTLKLYNNGFT-SVQG  173 (239)
T ss_dssp             BCCSEEEEEEESCTTCC----EECTTTTTTTBSSEEEEECCSCCCC-EECT
T ss_pred             ccccccEEECCCCcchh----hcCcccccchhcceeEEEcCCCCCc-ccCH
Confidence            666   7777777 663    233 3366666777 7777777666 4554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.37  E-value=8.2e-13  Score=108.38  Aligned_cols=86  Identities=20%  Similarity=0.204  Sum_probs=58.8

Q ss_pred             CCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCC
Q 037769          104 SHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLS  183 (200)
Q Consensus       104 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~  183 (200)
                      ++|++|++++|.+++. .+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+++    .+|..+..+++|+
T Consensus       193 ~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~----~lp~~l~~l~~L~  267 (332)
T 2ft3_A          193 ETLNELHLDHNKIQAI-ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS----RVPAGLPDLKLLQ  267 (332)
T ss_dssp             SSCSCCBCCSSCCCCC-CTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC----BCCTTGGGCTTCC
T ss_pred             CCCCEEECCCCcCCcc-CHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe----ecChhhhcCccCC
Confidence            4566666666666654 4456667777777777777777655556777777777777777773    5666677777777


Q ss_pred             EEecccccCCc
Q 037769          184 LLYLGATNMSL  194 (200)
Q Consensus       184 ~L~Ls~N~l~g  194 (200)
                      +|++++|++++
T Consensus       268 ~L~l~~N~l~~  278 (332)
T 2ft3_A          268 VVYLHTNNITK  278 (332)
T ss_dssp             EEECCSSCCCB
T ss_pred             EEECCCCCCCc
Confidence            77777777764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.36  E-value=1.9e-12  Score=114.11  Aligned_cols=104  Identities=22%  Similarity=0.167  Sum_probs=91.4

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCC-cccccCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLV-PYEMSHSSK  154 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-P~~l~~l~~  154 (200)
                      .+++.|+|  ++|.+. .+|.  .+..+++|+.|+|++|.+++  +| .+..+++|+.|+|++|.+++.. |..++.+++
T Consensus       463 ~~L~~L~L--s~N~l~-~lp~--~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~  534 (567)
T 1dce_A          463 LLVTHLDL--SHNRLR-ALPP--ALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPR  534 (567)
T ss_dssp             TTCCEEEC--CSSCCC-CCCG--GGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTT
T ss_pred             ccCcEeec--Cccccc-ccch--hhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCC
Confidence            57999999  999999 8888  89999999999999999997  67 8999999999999999999776 999999999


Q ss_pred             CCEEeccCCcCCCCCCchhhhhcCCCCCCEEec
Q 037769          155 LTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYL  187 (200)
Q Consensus       155 L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~L  187 (200)
                      |+.|+|++|++++........+..+++|+.|++
T Consensus       535 L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          535 LVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            999999999997543333344566899999874

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.35  E-value=1e-12  Score=107.35  Aligned_cols=106  Identities=19%  Similarity=0.158  Sum_probs=92.4

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccc-cCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTL-FHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSK  154 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l-~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~  154 (200)
                      .+++.|++  ++|.+.+..+.  .+ ..+++|++|++++|.+++  ++. ...+++|+.|++++|.++ .+|..+..+++
T Consensus       144 ~~L~~L~L--s~N~l~~~~~~--~~~~~l~~L~~L~L~~N~l~~--~~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~  215 (317)
T 3o53_A          144 SRVQYLDL--KLNEIDTVNFA--ELAASSDTLEHLNLQYNFIYD--VKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAG  215 (317)
T ss_dssp             SSEEEEEC--TTSCCCEEEGG--GGGGGTTTCCEEECTTSCCCE--EEC-CCCCTTCCEEECCSSCCC-EECGGGGGGTT
T ss_pred             CCCCEEEC--CCCCCCcccHH--HHhhccCcCCEEECCCCcCcc--ccc-ccccccCCEEECCCCcCC-cchhhhcccCc
Confidence            57999999  99999977666  55 478999999999999986  443 446999999999999999 46666999999


Q ss_pred             CCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCC
Q 037769          155 LTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMS  193 (200)
Q Consensus       155 L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~  193 (200)
                      |+.|+|++|+++    .+|..+..+++|+.|++++|++.
T Consensus       216 L~~L~L~~N~l~----~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          216 VTWISLRNNKLV----LIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CSEEECTTSCCC----EECTTCCCCTTCCEEECTTCCCB
T ss_pred             ccEEECcCCccc----chhhHhhcCCCCCEEEccCCCcc
Confidence            999999999994    57888999999999999999998

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.34  E-value=6.7e-12  Score=94.25  Aligned_cols=86  Identities=20%  Similarity=0.183  Sum_probs=76.2

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      ..++.|+|  ++|.+.+..+.  .+.++++|++|+|++|.+++. .+..+..+++|++|+|++|.+++..+..+..+++|
T Consensus        33 ~~L~~L~L--s~N~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L  107 (174)
T 2r9u_A           33 TDKQRLWL--NNNQITKLEPG--VFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSL  107 (174)
T ss_dssp             TTCSEEEC--CSSCCCCCCTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             CCCcEEEe--CCCCccccCHH--HhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCCccceeCHHHhccccCC
Confidence            57899999  99999988787  899999999999999999984 44456899999999999999996555569999999


Q ss_pred             CEEeccCCcCC
Q 037769          156 THLDLSFCVLT  166 (200)
Q Consensus       156 ~~L~Ls~N~l~  166 (200)
                      ++|+|++|.+.
T Consensus       108 ~~L~L~~N~~~  118 (174)
T 2r9u_A          108 THIYLYNNPWD  118 (174)
T ss_dssp             SEEECCSSCBC
T ss_pred             CEEEeCCCCcc
Confidence            99999999995

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.32  E-value=8.7e-12  Score=101.61  Aligned_cols=102  Identities=20%  Similarity=0.319  Sum_probs=45.8

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .+++.|++  ++|.+.+ ++   .+..+++|++|++++|.+++  ++. +..+++|+.|++++|.+++. +. +..+++|
T Consensus        85 ~~L~~L~L--~~n~l~~-~~---~~~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L  153 (308)
T 1h6u_A           85 TKITELEL--SGNPLKN-VS---AIAGLQSIKTLDLTSTQITD--VTP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNL  153 (308)
T ss_dssp             CSCCEEEC--CSCCCSC-CG---GGTTCTTCCEEECTTSCCCC--CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTC
T ss_pred             CCCCEEEc--cCCcCCC-ch---hhcCCCCCCEEECCCCCCCC--chh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCc
Confidence            34555555  5555442 22   24445555555555555543  222 44455555555555554422 22 4444444


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCC
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMS  193 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~  193 (200)
                      ++|++++|.++    .++. +..+++|+.|++++|.++
T Consensus       154 ~~L~l~~n~l~----~~~~-l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          154 QYLSIGNAQVS----DLTP-LANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             CEEECCSSCCC----CCGG-GTTCTTCCEEECCSSCCC
T ss_pred             cEEEccCCcCC----CChh-hcCCCCCCEEECCCCccC
Confidence            44444444442    1222 344444444444444443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.32  E-value=1.8e-12  Score=112.13  Aligned_cols=106  Identities=19%  Similarity=0.135  Sum_probs=94.0

Q ss_pred             CcEEEEEcccCCCCCeeccCCCcccc-CCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLF-HLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSK  154 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~-~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~  154 (200)
                      .+++.|++  ++|.+.+..+.  .+. .+++|+.|+|++|.+++  +|. +..+++|+.|+|++|.+++ +|+.+..+++
T Consensus       144 ~~L~~L~L--s~N~l~~~~~~--~l~~~l~~L~~L~Ls~N~l~~--~~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~  215 (487)
T 3oja_A          144 SRVQYLDL--KLNEIDTVNFA--ELAASSDTLEHLNLQYNFIYD--VKG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAG  215 (487)
T ss_dssp             SSEEEEEC--TTSCCCEEEGG--GGGGGTTTCCEEECTTSCCCE--EEC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTT
T ss_pred             CCCCEEEC--CCCCCCCcChH--HHhhhCCcccEEecCCCcccc--ccc-cccCCCCCEEECCCCCCCC-CCHhHcCCCC
Confidence            58999999  99999988877  665 79999999999999987  443 4569999999999999996 5566899999


Q ss_pred             CCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCC
Q 037769          155 LTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMS  193 (200)
Q Consensus       155 L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~  193 (200)
                      |+.|+|++|.++    .+|..+..+++|+.|++++|.+.
T Consensus       216 L~~L~Ls~N~l~----~lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          216 VTWISLRNNKLV----LIEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CSEEECTTSCCC----EECTTCCCCTTCCEEECTTCCBC
T ss_pred             ccEEEecCCcCc----ccchhhccCCCCCEEEcCCCCCc
Confidence            999999999995    47888999999999999999987

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.31  E-value=8.8e-12  Score=101.58  Aligned_cols=103  Identities=24%  Similarity=0.336  Sum_probs=60.9

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .+++.|++  ++|.+.+ ++   .+..+++|++|++++|.+++  ++. +..+++|+.|++++|.+++ ++. +..+++|
T Consensus       107 ~~L~~L~l--~~n~l~~-~~---~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L  175 (308)
T 1h6u_A          107 QSIKTLDL--TSTQITD-VT---PLAGLSNLQVLYLDLNQITN--ISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKL  175 (308)
T ss_dssp             TTCCEEEC--TTSCCCC-CG---GGTTCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTC
T ss_pred             CCCCEEEC--CCCCCCC-ch---hhcCCCCCCEEECCCCccCc--Ccc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCC
Confidence            46777777  7777764 33   26666777777777776665  333 5666666666666666663 333 5566666


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL  194 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g  194 (200)
                      +.|++++|+++    .++. +..+++|++|++++|++++
T Consensus       176 ~~L~l~~n~l~----~~~~-l~~l~~L~~L~L~~N~l~~  209 (308)
T 1h6u_A          176 TTLKADDNKIS----DISP-LASLPNLIEVHLKNNQISD  209 (308)
T ss_dssp             CEEECCSSCCC----CCGG-GGGCTTCCEEECTTSCCCB
T ss_pred             CEEECCCCccC----cChh-hcCCCCCCEEEccCCccCc
Confidence            66666666663    1222 4555555555555555553

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.31  E-value=1.3e-11  Score=98.46  Aligned_cols=103  Identities=20%  Similarity=0.243  Sum_probs=82.4

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .+++.|++  ++|.+.+ +++   +..+++|++|++++|.+++  +|. +.. ++|+.|++++|.+++ ++ .+..+++|
T Consensus        63 ~~L~~L~L--~~N~i~~-~~~---l~~l~~L~~L~L~~N~l~~--l~~-~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L  130 (263)
T 1xeu_A           63 TNLKELHL--SHNQISD-LSP---LKDLTKLEELSVNRNRLKN--LNG-IPS-ACLSRLFLDNNELRD-TD-SLIHLKNL  130 (263)
T ss_dssp             TTCCEEEC--CSSCCCC-CGG---GTTCSSCCEEECCSSCCSC--CTT-CCC-SSCCEEECCSSCCSB-SG-GGTTCTTC
T ss_pred             CCCCEEEC--CCCccCC-Chh---hccCCCCCEEECCCCccCC--cCc-ccc-CcccEEEccCCccCC-Ch-hhcCcccc
Confidence            57888999  8888874 333   7788899999999998886  454 333 889999999998885 44 58889999


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcC
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLI  195 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~  195 (200)
                      +.|++++|+++    .++ .+..+++|++|++++|++++.
T Consensus       131 ~~L~Ls~N~i~----~~~-~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A          131 EILSIRNNKLK----SIV-MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             CEEECTTSCCC----BCG-GGGGCTTCCEEECTTSCCCBC
T ss_pred             cEEECCCCcCC----CCh-HHccCCCCCEEECCCCcCcch
Confidence            99999999995    344 588899999999999998864

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.30  E-value=1.1e-11  Score=100.29  Aligned_cols=102  Identities=25%  Similarity=0.257  Sum_probs=55.8

Q ss_pred             cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCC
Q 037769           77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT  156 (200)
Q Consensus        77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~  156 (200)
                      +++.|++  ++|.+.+ ++   .+..+++|++|++++|.+++  + +.+..+++|+.|++++|.+++.  ..+..+++|+
T Consensus        91 ~L~~L~l--~~n~l~~-~~---~l~~l~~L~~L~L~~n~i~~--~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~  159 (291)
T 1h6t_A           91 NLGWLFL--DENKVKD-LS---SLKDLKKLKSLSLEHNGISD--I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLD  159 (291)
T ss_dssp             TCCEEEC--CSSCCCC-GG---GGTTCTTCCEEECTTSCCCC--C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred             CCCEEEC--CCCcCCC-Ch---hhccCCCCCEEECCCCcCCC--C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCC
Confidence            4444555  4444442 22   24555555555555555553  2 2355556666666666665532  3455666666


Q ss_pred             EEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769          157 HLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL  194 (200)
Q Consensus       157 ~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g  194 (200)
                      +|++++|.++    .++. +..+++|++|++++|.+++
T Consensus       160 ~L~L~~N~l~----~~~~-l~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          160 TLSLEDNQIS----DIVP-LAGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             EEECCSSCCC----CCGG-GTTCTTCCEEECCSSCCCB
T ss_pred             EEEccCCccc----cchh-hcCCCccCEEECCCCcCCC
Confidence            6666666663    2222 6666677777777776654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.30  E-value=1e-11  Score=100.46  Aligned_cols=103  Identities=25%  Similarity=0.345  Sum_probs=90.6

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .+++.|++  ++|.+.+ + +  .+..+++|+.|++++|.+++  + +.+..+++|+.|++++|.+++..|  +..+++|
T Consensus       112 ~~L~~L~L--~~n~i~~-~-~--~l~~l~~L~~L~l~~n~l~~--~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L  180 (291)
T 1h6t_A          112 KKLKSLSL--EHNGISD-I-N--GLVHLPQLESLYLGNNKITD--I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKL  180 (291)
T ss_dssp             TTCCEEEC--TTSCCCC-C-G--GGGGCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred             CCCCEEEC--CCCcCCC-C-h--hhcCCCCCCEEEccCCcCCc--c-hhhccCCCCCEEEccCCccccchh--hcCCCcc
Confidence            68999999  9999985 3 3  58899999999999999986  4 578999999999999999996544  8999999


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL  194 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g  194 (200)
                      +.|++++|.++    .++. +..+++|+.|++++|++..
T Consensus       181 ~~L~L~~N~i~----~l~~-l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          181 QNLYLSKNHIS----DLRA-LAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CEEECCSSCCC----BCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred             CEEECCCCcCC----CChh-hccCCCCCEEECcCCcccC
Confidence            99999999995    3554 8999999999999999874

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.29  E-value=1.7e-11  Score=97.86  Aligned_cols=103  Identities=18%  Similarity=0.150  Sum_probs=83.0

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .+++.|++  ++|.+.+ ++.   +.. ++|+.|++++|.+++  ++ .+..+++|+.|++++|.+++ ++ .+..+++|
T Consensus        85 ~~L~~L~L--~~N~l~~-l~~---~~~-~~L~~L~L~~N~l~~--~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L  152 (263)
T 1xeu_A           85 TKLEELSV--NRNRLKN-LNG---IPS-ACLSRLFLDNNELRD--TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKL  152 (263)
T ss_dssp             SSCCEEEC--CSSCCSC-CTT---CCC-SSCCEEECCSSCCSB--SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTC
T ss_pred             CCCCEEEC--CCCccCC-cCc---ccc-CcccEEEccCCccCC--Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCC
Confidence            57889999  9998884 444   333 889999999999886  44 58889999999999999985 44 57888999


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcC
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLI  195 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~  195 (200)
                      +.|++++|++++    + ..+..+++|+.|++++|++.+.
T Consensus       153 ~~L~L~~N~i~~----~-~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          153 EVLDLHGNEITN----T-GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CEEECTTSCCCB----C-TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CEEECCCCcCcc----h-HHhccCCCCCEEeCCCCcccCC
Confidence            999999999953    2 5678889999999999988754

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.27  E-value=2.4e-11  Score=99.83  Aligned_cols=108  Identities=20%  Similarity=0.288  Sum_probs=75.8

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .+++.|++  ++|.+.+ ++.   +..+++|++|++++|.++.  + +.+..+++|+.|++++|.+++ + +.+..+++|
T Consensus       221 ~~L~~L~l--~~n~l~~-~~~---~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L  289 (347)
T 4fmz_A          221 TRLNSLKI--GNNKITD-LSP---LANLSQLTWLEIGTNQISD--I-NAVKDLTKLKMLNVGSNQISD-I-SVLNNLSQL  289 (347)
T ss_dssp             TTCCEEEC--CSSCCCC-CGG---GTTCTTCCEEECCSSCCCC--C-GGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTC
T ss_pred             CcCCEEEc--cCCccCC-Ccc---hhcCCCCCEEECCCCccCC--C-hhHhcCCCcCEEEccCCccCC-C-hhhcCCCCC
Confidence            45677777  7776653 222   5667777777777777765  3 356777778888888877774 3 346777788


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCC
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKP  197 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP  197 (200)
                      +.|++++|.++   ...|..+..+++|++|++++|++++..|
T Consensus       290 ~~L~L~~n~l~---~~~~~~l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          290 NSLFLNNNQLG---NEDMEVIGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             SEEECCSSCCC---GGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred             CEEECcCCcCC---CcChhHhhccccCCEEEccCCccccccC
Confidence            88888888773   4556677888888888888888876544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.25  E-value=1.5e-11  Score=101.04  Aligned_cols=105  Identities=18%  Similarity=0.214  Sum_probs=90.0

Q ss_pred             CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCC
Q 037769           75 TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSK  154 (200)
Q Consensus        75 ~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~  154 (200)
                      ..+++.|++  ++|.+.+ + +  .+..+++|++|++++|.+++  + +.+..+++|+.|++++|.+.+..|..+..+++
T Consensus       242 l~~L~~L~l--~~n~l~~-~-~--~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  312 (347)
T 4fmz_A          242 LSQLTWLEI--GTNQISD-I-N--AVKDLTKLKMLNVGSNQISD--I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN  312 (347)
T ss_dssp             CTTCCEEEC--CSSCCCC-C-G--GGTTCTTCCEEECCSSCCCC--C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTT
T ss_pred             CCCCCEEEC--CCCccCC-C-h--hHhcCCCcCEEEccCCccCC--C-hhhcCCCCCCEEECcCCcCCCcChhHhhcccc
Confidence            368999999  9999885 3 3  58899999999999999986  4 45889999999999999999888888999999


Q ss_pred             CCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCC
Q 037769          155 LTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMS  193 (200)
Q Consensus       155 L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~  193 (200)
                      |++|++++|+++   . +++ +..+++|++|++++|.|+
T Consensus       313 L~~L~L~~n~l~---~-~~~-~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          313 LTTLFLSQNHIT---D-IRP-LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CSEEECCSSSCC---C-CGG-GGGCTTCSEESSSCC---
T ss_pred             CCEEEccCCccc---c-ccC-hhhhhccceeehhhhccc
Confidence            999999999995   3 333 889999999999999885

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.24  E-value=4.1e-11  Score=102.90  Aligned_cols=101  Identities=22%  Similarity=0.174  Sum_probs=51.6

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .+++.|++  ++|.+.+.     .+..+++|++|++++|.+++  ++  ++.+++|++|++++|.+++ +|  ++.+++|
T Consensus        64 ~~L~~L~L--s~n~l~~~-----~~~~l~~L~~L~Ls~N~l~~--~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L  129 (457)
T 3bz5_A           64 TGLTKLIC--TSNNITTL-----DLSQNTNLTYLACDSNKLTN--LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLL  129 (457)
T ss_dssp             TTCSEEEC--CSSCCSCC-----CCTTCTTCSEEECCSSCCSC--CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTC
T ss_pred             CCCCEEEc--cCCcCCeE-----ccccCCCCCEEECcCCCCce--ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcC
Confidence            34555555  55555431     14455555555555555554  22  4555555555555555553 32  4555555


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCC
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIK  196 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~i  196 (200)
                      ++|++++|++++    ++  ++.+++|++|++++|+..+.+
T Consensus       130 ~~L~l~~N~l~~----l~--l~~l~~L~~L~l~~n~~~~~~  164 (457)
T 3bz5_A          130 TYLNCARNTLTE----ID--VSHNTQLTELDCHLNKKITKL  164 (457)
T ss_dssp             CEEECTTSCCSC----CC--CTTCTTCCEEECTTCSCCCCC
T ss_pred             CEEECCCCccce----ec--cccCCcCCEEECCCCCccccc
Confidence            555555555532    21  455555666666665444433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.24  E-value=5.3e-14  Score=107.54  Aligned_cols=109  Identities=18%  Similarity=0.089  Sum_probs=93.7

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .+++.|++  ++|.+.+ +|.   +..+++|++|++++|.++.  +|..+..+++|+.|++++|.+++ +| .+..+++|
T Consensus        48 ~~L~~L~l--s~n~l~~-l~~---~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L  117 (198)
T 1ds9_A           48 KACKHLAL--STNNIEK-ISS---LSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL  117 (198)
T ss_dssp             TTCSEEEC--SEEEESC-CCC---HHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred             CCCCEEEC--CCCCCcc-ccc---cccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence            57999999  9999886 554   8899999999999999985  78888888999999999999995 56 68889999


Q ss_pred             CEEeccCCcCCCCCCchh--hhhcCCCCCCEEecccccCCcCCCC
Q 037769          156 THLDLSFCVLTIEHRTFD--LLASNLTKLSLLYLGATNMSLIKPF  198 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp--~~l~~l~~L~~L~Ls~N~l~g~iP~  198 (200)
                      ++|++++|+++    .++  ..+..+++|++|++++|++.+.+|.
T Consensus       118 ~~L~l~~N~i~----~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A          118 RVLYMSNNKIT----NWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             SEEEESEEECC----CHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             CEEECCCCcCC----chhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            99999999994    344  4789999999999999999876553

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.22  E-value=5.6e-11  Score=105.51  Aligned_cols=85  Identities=27%  Similarity=0.374  Sum_probs=47.2

Q ss_pred             ccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCC
Q 037769          100 LFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNL  179 (200)
Q Consensus       100 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l  179 (200)
                      +..+++|+.|+|++|.+++  + ..+..+++|+.|+|++|.+.+..|  +..+++|+.|+|++|.++    .+| .+..+
T Consensus       127 l~~l~~L~~L~Ls~N~l~~--l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~----~l~-~l~~l  196 (605)
T 1m9s_A          127 LVHLPQLESLYLGNNKITD--I-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS----DLR-ALAGL  196 (605)
T ss_dssp             GGGCTTCSEEECCSSCCCC--C-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC----BCG-GGTTC
T ss_pred             ccCCCccCEEECCCCccCC--c-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC----CCh-HHccC
Confidence            4455555555555555543  2 345555566666666666554333  555666666666666663    222 35666


Q ss_pred             CCCCEEecccccCCc
Q 037769          180 TKLSLLYLGATNMSL  194 (200)
Q Consensus       180 ~~L~~L~Ls~N~l~g  194 (200)
                      ++|+.|+|++|++.+
T Consensus       197 ~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          197 KNLDVLELFSQECLN  211 (605)
T ss_dssp             TTCSEEECCSEEEEC
T ss_pred             CCCCEEEccCCcCcC
Confidence            666666666666654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.21  E-value=9.6e-12  Score=109.69  Aligned_cols=82  Identities=13%  Similarity=0.076  Sum_probs=47.5

Q ss_pred             CCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC-------CEEeccCCcCCCCCCchhhhh
Q 037769          104 SHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL-------THLDLSFCVLTIEHRTFDLLA  176 (200)
Q Consensus       104 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L-------~~L~Ls~N~l~~~~~~lp~~l  176 (200)
                      ++|++|++++|.+++  +|. +.  ++|+.|+|++|.++ .+|. +..  +|       +.|+|++|+++    .+|..+
T Consensus       160 ~~L~~L~Ls~N~L~~--lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~----~lp~~l  226 (571)
T 3cvr_A          160 TSLEVLSVRNNQLTF--LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT----HIPENI  226 (571)
T ss_dssp             TTCCEEECCSSCCSC--CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC----CCCGGG
T ss_pred             CCcCEEECCCCCCCC--cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce----ecCHHH
Confidence            344444444444443  333 33  55555555555555 4454 333  45       66666666663    467767


Q ss_pred             cCCCCCCEEecccccCCcCCCC
Q 037769          177 SNLTKLSLLYLGATNMSLIKPF  198 (200)
Q Consensus       177 ~~l~~L~~L~Ls~N~l~g~iP~  198 (200)
                      ..+++|+.|+|++|++++.+|.
T Consensus       227 ~~l~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          227 LSLDPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             GGSCTTEEEECCSSSCCHHHHH
T ss_pred             hcCCCCCEEEeeCCcCCCcCHH
Confidence            7788888888888888776654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.21  E-value=8.3e-11  Score=104.39  Aligned_cols=102  Identities=25%  Similarity=0.259  Sum_probs=60.1

Q ss_pred             cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCC
Q 037769           77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT  156 (200)
Q Consensus        77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~  156 (200)
                      +++.|+|  ++|.+.+ ++   .+..+++|+.|+|++|.+..  + +.+..+++|+.|+|++|.+++.  ..+..+++|+
T Consensus        88 ~L~~L~L--s~N~l~~-l~---~l~~l~~L~~L~Ls~N~l~~--l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~  156 (605)
T 1m9s_A           88 NLGWLFL--DENKIKD-LS---SLKDLKKLKSLSLEHNGISD--I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLD  156 (605)
T ss_dssp             TCCEEEC--CSSCCCC-CT---TSTTCTTCCEEECTTSCCCC--C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCS
T ss_pred             CCCEEEC--cCCCCCC-Ch---hhccCCCCCEEEecCCCCCC--C-ccccCCCccCEEECCCCccCCc--hhhcccCCCC
Confidence            4555555  5555542 22   35556666666666666654  2 2355666666666666666643  4466666677


Q ss_pred             EEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769          157 HLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL  194 (200)
Q Consensus       157 ~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g  194 (200)
                      .|+|++|.++   . ++. +..+++|+.|+|++|+|++
T Consensus       157 ~L~Ls~N~l~---~-~~~-l~~l~~L~~L~Ls~N~i~~  189 (605)
T 1m9s_A          157 TLSLEDNQIS---D-IVP-LAGLTKLQNLYLSKNHISD  189 (605)
T ss_dssp             EEECCSSCCC---C-CGG-GTTCTTCCEEECCSSCCCB
T ss_pred             EEECcCCcCC---C-chh-hccCCCCCEEECcCCCCCC
Confidence            7777776663   2 222 6677777777777777664

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.20  E-value=8.6e-13  Score=107.96  Aligned_cols=109  Identities=28%  Similarity=0.266  Sum_probs=47.1

Q ss_pred             cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCC-CCCCCCCChhccCCCCCCEEeccCC-cCCCC-CcccccCCC
Q 037769           77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYS-NFLGSQLSPEFGRLKELTYLNLSAS-NFGGL-VPYEMSHSS  153 (200)
Q Consensus        77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n-~l~~~~~p~~l~~l~~L~~L~Ls~n-~l~~~-~P~~l~~l~  153 (200)
                      ++++|++  ++|.+.+..+.  .+..+++|++|++++| .+++..++..+..+++|+.|++++| .+++. ++..+..++
T Consensus       119 ~L~~L~L--~~~~l~~~~~~--~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~  194 (336)
T 2ast_B          119 KLQNLSL--EGLRLSDPIVN--TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS  194 (336)
T ss_dssp             CCSEEEC--TTCBCCHHHHH--HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred             CCCEEeC--cCcccCHHHHH--HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc
Confidence            3444444  44444433333  3444444444444444 3332112333444444444444444 44422 333344444


Q ss_pred             -CCCEEeccCC--cCCCCCCchhhhhcCCCCCCEEeccccc
Q 037769          154 -KLTHLDLSFC--VLTIEHRTFDLLASNLTKLSLLYLGATN  191 (200)
Q Consensus       154 -~L~~L~Ls~N--~l~~~~~~lp~~l~~l~~L~~L~Ls~N~  191 (200)
                       +|++|++++|  .++  ...+|..+..+++|++|++++|.
T Consensus       195 ~~L~~L~l~~~~~~~~--~~~l~~~~~~~~~L~~L~l~~~~  233 (336)
T 2ast_B          195 ETITQLNLSGYRKNLQ--KSDLSTLVRRCPNLVHLDLSDSV  233 (336)
T ss_dssp             TTCCEEECCSCGGGSC--HHHHHHHHHHCTTCSEEECTTCT
T ss_pred             cCCCEEEeCCCcccCC--HHHHHHHHhhCCCCCEEeCCCCC
Confidence             4555555444  232  12334444445555555555554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.19  E-value=3.5e-12  Score=104.27  Aligned_cols=110  Identities=21%  Similarity=0.267  Sum_probs=54.7

Q ss_pred             cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCC
Q 037769           77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT  156 (200)
Q Consensus        77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~  156 (200)
                      +++.+++  ++|.+.+..+.   +..+++|++|++++|.+++..+|..+..+++|++|++++|.+++..|..++.+++|+
T Consensus        71 ~l~~L~l--~~n~l~~~~~~---~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~  145 (336)
T 2ast_B           71 GVIAFRC--PRSFMDQPLAE---HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLV  145 (336)
T ss_dssp             TCSEEEC--TTCEECSCCCS---CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCS
T ss_pred             cceEEEc--CCccccccchh---hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCC
Confidence            4455555  55555444333   344555555555555554321344455555555555555555544455555555555


Q ss_pred             EEeccCC-cCCCCCCchhhhhcCCCCCCEEecccc-cCC
Q 037769          157 HLDLSFC-VLTIEHRTFDLLASNLTKLSLLYLGAT-NMS  193 (200)
Q Consensus       157 ~L~Ls~N-~l~~~~~~lp~~l~~l~~L~~L~Ls~N-~l~  193 (200)
                      +|++++| .+++  ..++..+..+++|++|++++| .++
T Consensus       146 ~L~L~~~~~l~~--~~l~~~~~~~~~L~~L~l~~~~~l~  182 (336)
T 2ast_B          146 RLNLSGCSGFSE--FALQTLLSSCSRLDELNLSWCFDFT  182 (336)
T ss_dssp             EEECTTCBSCCH--HHHHHHHHHCTTCCEEECCCCTTCC
T ss_pred             EEECCCCCCCCH--HHHHHHHhcCCCCCEEcCCCCCCcC
Confidence            5555555 3421  123444455555555555555 444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.19  E-value=9.5e-11  Score=100.40  Aligned_cols=96  Identities=24%  Similarity=0.357  Sum_probs=45.0

Q ss_pred             cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCC
Q 037769           77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT  156 (200)
Q Consensus        77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~  156 (200)
                      ++++|++  ++|.+.+ +++   +..+++|++|++++|.+.+  +++ +..+++|++|++++|.+.+ ++. +..+++|+
T Consensus        69 ~L~~L~L--s~n~l~~-~~~---~~~l~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~  137 (466)
T 1o6v_A           69 NLTQINF--SNNQLTD-ITP---LKNLTKLVDILMNNNQIAD--ITP-LANLTNLTGLTLFNNQITD-IDP-LKNLTNLN  137 (466)
T ss_dssp             TCCEEEC--CSSCCCC-CGG---GTTCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCC-CGG-GTTCTTCS
T ss_pred             CCCEEEC--CCCccCC-chh---hhccccCCEEECCCCcccc--Chh-hcCCCCCCEEECCCCCCCC-ChH-HcCCCCCC
Confidence            4455555  5554442 221   4445555555555555544  222 4555555555555555543 222 44555555


Q ss_pred             EEeccCCcCCCCCCchhhhhcCCCCCCEEecc
Q 037769          157 HLDLSFCVLTIEHRTFDLLASNLTKLSLLYLG  188 (200)
Q Consensus       157 ~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls  188 (200)
                      +|++++|.++    .++ .+..+++|++|+++
T Consensus       138 ~L~l~~n~l~----~~~-~~~~l~~L~~L~l~  164 (466)
T 1o6v_A          138 RLELSSNTIS----DIS-ALSGLTSLQQLSFG  164 (466)
T ss_dssp             EEEEEEEEEC----CCG-GGTTCTTCSEEEEE
T ss_pred             EEECCCCccC----CCh-hhccCCcccEeecC
Confidence            5555555552    122 24455555555553

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.19  E-value=7.9e-11  Score=100.91  Aligned_cols=60  Identities=32%  Similarity=0.392  Sum_probs=24.5

Q ss_pred             cCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcC
Q 037769          101 FHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVL  165 (200)
Q Consensus       101 ~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l  165 (200)
                      ..+++|+.|++++|.+.+.  +. +..+++|+.|++++|.+++..|  +..+++|+.|++++|++
T Consensus       284 ~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l  343 (466)
T 1o6v_A          284 AGLTALTNLELNENQLEDI--SP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV  343 (466)
T ss_dssp             TTCTTCSEEECCSSCCSCC--GG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCC
T ss_pred             cCCCccCeEEcCCCcccCc--hh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCcc
Confidence            3344444444444444432  11 3344444444444444443322  33344444444444444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.19  E-value=5.5e-11  Score=97.90  Aligned_cols=85  Identities=15%  Similarity=0.079  Sum_probs=74.2

Q ss_pred             cEEEccCC-CCCCCCCChhccCCCCCCEEeccC-CcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCE
Q 037769          107 QSLNLAYS-NFLGSQLSPEFGRLKELTYLNLSA-SNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSL  184 (200)
Q Consensus       107 ~~L~L~~n-~l~~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~  184 (200)
                      ..++++++ .++.  +|. +..+++|+.|+|++ |.+++..|..|.++++|+.|+|++|+|+   +..|..|.+|++|++
T Consensus        11 ~~v~~~~~n~l~~--ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~---~~~~~~~~~l~~L~~   84 (347)
T 2ifg_A           11 SGLRCTRDGALDS--LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR---FVAPDAFHFTPRLSR   84 (347)
T ss_dssp             SCEECCSSCCCTT--TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC---EECTTGGGSCSCCCE
T ss_pred             CEEEcCCCCCCCc--cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc---eeCHHHhcCCcCCCE
Confidence            45688888 8886  788 99999999999996 9999777788999999999999999995   445667899999999


Q ss_pred             EecccccCCcCCCC
Q 037769          185 LYLGATNMSLIKPF  198 (200)
Q Consensus       185 L~Ls~N~l~g~iP~  198 (200)
                      |+|++|+|++ +|+
T Consensus        85 L~l~~N~l~~-~~~   97 (347)
T 2ifg_A           85 LNLSFNALES-LSW   97 (347)
T ss_dssp             EECCSSCCSC-CCS
T ss_pred             EeCCCCccce-eCH
Confidence            9999999996 554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.18  E-value=4.6e-12  Score=105.91  Aligned_cols=115  Identities=17%  Similarity=0.204  Sum_probs=72.8

Q ss_pred             cEEEEEcccCCCCCe--e---ccCCCccccCCCCCcEEEccCCCCC----CCCCChhccCCCCCCEEeccCCcCCCC---
Q 037769           77 NVIGLDLYSSCSWLV--G---TIDDNSTLFHLSHLQSLNLAYSNFL----GSQLSPEFGRLKELTYLNLSASNFGGL---  144 (200)
Q Consensus        77 ~l~~L~L~~~~n~l~--~---~~p~~~~l~~l~~L~~L~L~~n~l~----~~~~p~~l~~l~~L~~L~Ls~n~l~~~---  144 (200)
                      +++.|++  ++|.+.  |   ..+.  .+..+++|++|+|++|.++    .. +|..+..+++|+.|+|++|.+++.   
T Consensus       188 ~L~~L~L--~~n~l~~~g~~~l~~~--~l~~~~~L~~L~Ls~n~l~~~g~~~-l~~~l~~~~~L~~L~L~~n~i~~~~~~  262 (386)
T 2ca6_A          188 LLHTVKM--VQNGIRPEGIEHLLLE--GLAYCQELKVLDLQDNTFTHLGSSA-LAIALKSWPNLRELGLNDCLLSARGAA  262 (386)
T ss_dssp             TCCEEEC--CSSCCCHHHHHHHHHT--TGGGCTTCCEEECCSSCCHHHHHHH-HHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             CcCEEEC--cCCCCCHhHHHHHHHH--HhhcCCCccEEECcCCCCCcHHHHH-HHHHHccCCCcCEEECCCCCCchhhHH
Confidence            5666666  666665  2   2343  4566777777777777764    33 566667777777777777777654   


Q ss_pred             -Ccccc--cCCCCCCEEeccCCcCCCC-CCchhhhh-cCCCCCCEEecccccCCcCC
Q 037769          145 -VPYEM--SHSSKLTHLDLSFCVLTIE-HRTFDLLA-SNLTKLSLLYLGATNMSLIK  196 (200)
Q Consensus       145 -~P~~l--~~l~~L~~L~Ls~N~l~~~-~~~lp~~l-~~l~~L~~L~Ls~N~l~g~i  196 (200)
                       +|..+  +.+++|++|+|++|.+++. ...+|..+ .++++|++|++++|++++..
T Consensus       263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence             44555  3377777777777777310 00266665 55777888888888777654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.17  E-value=3.9e-11  Score=102.96  Aligned_cols=87  Identities=20%  Similarity=0.199  Sum_probs=48.2

Q ss_pred             CCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCC----
Q 037769          104 SHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNL----  179 (200)
Q Consensus       104 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l----  179 (200)
                      ++|++|++++|.+++  +|..   +++|+.|++++|.++ .+|.   .+++|++|++++|++++. ..+|..++.+    
T Consensus       317 ~~L~~L~Ls~N~l~~--lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l-~~ip~~l~~L~~n~  386 (454)
T 1jl5_A          317 PSLEELNVSNNKLIE--LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREF-PDIPESVEDLRMNS  386 (454)
T ss_dssp             TTCCEEECCSSCCSC--CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSC-CCCCTTCCEEECCC
T ss_pred             CcCCEEECCCCcccc--cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcC-CCChHHHHhhhhcc
Confidence            467777777777775  5543   577888888888887 4666   467889999999988642 2567777766    


Q ss_pred             ---------CCCCEEecccccCCc--CCCCCC
Q 037769          180 ---------TKLSLLYLGATNMSL--IKPFSL  200 (200)
Q Consensus       180 ---------~~L~~L~Ls~N~l~g--~iP~~~  200 (200)
                               ++|++|++++|+++|  .||.++
T Consensus       387 ~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl  418 (454)
T 1jl5_A          387 HLAEVPELPQNLKQLHVETNPLREFPDIPESV  418 (454)
T ss_dssp             --------------------------------
T ss_pred             cccccccccCcCCEEECCCCcCCccccchhhH
Confidence                     788999999999887  788653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.17  E-value=4e-11  Score=99.19  Aligned_cols=129  Identities=17%  Similarity=0.155  Sum_probs=94.2

Q ss_pred             ccccceEecCC---------CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCCh-hccCCCCCCE
Q 037769           64 CSWDGVTCDNV---------TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSP-EFGRLKELTY  133 (200)
Q Consensus        64 c~w~gv~c~~~---------~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~-~l~~l~~L~~  133 (200)
                      |.|..|.|.+.         ...+++|+|  ++|.|+...+.  .|.++++|++|+|++|.+.+. +|. .|.++++++.
T Consensus         9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~L--s~N~i~~i~~~--~f~~l~~L~~L~Ls~N~i~~~-i~~~~f~~L~~l~~   83 (350)
T 4ay9_X            9 CSNRVFLCQESKVTEIPSDLPRNAIELRF--VLTKLRVIQKG--AFSGFGDLEKIEISQNDVLEV-IEADVFSNLPKLHE   83 (350)
T ss_dssp             EETTEEEEESTTCCSCCTTCCTTCSEEEE--ESCCCSEECTT--SSTTCTTCCEEEEECCTTCCE-ECTTSBCSCTTCCE
T ss_pred             eeCCEEEecCCCCCccCcCcCCCCCEEEc--cCCcCCCcCHH--HHcCCCCCCEEECcCCCCCCc-cChhHhhcchhhhh
Confidence            68888999642         247899999  99999854445  689999999999999998765 554 5778888765


Q ss_pred             -EeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCC---------------------chh-hhhcCC-CCCCEEeccc
Q 037769          134 -LNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHR---------------------TFD-LLASNL-TKLSLLYLGA  189 (200)
Q Consensus       134 -L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~---------------------~lp-~~l~~l-~~L~~L~Ls~  189 (200)
                       +.+..|++....|..+..+++|++|++++|+++....                     .+| ..+..+ ..++.|++++
T Consensus        84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~  163 (350)
T 4ay9_X           84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK  163 (350)
T ss_dssp             EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred             hhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence             5667788986667788999999999999998853210                     111 123333 3567788888


Q ss_pred             ccCCcCCCC
Q 037769          190 TNMSLIKPF  198 (200)
Q Consensus       190 N~l~g~iP~  198 (200)
                      |+|+. ||.
T Consensus       164 N~i~~-i~~  171 (350)
T 4ay9_X          164 NGIQE-IHN  171 (350)
T ss_dssp             SCCCE-ECT
T ss_pred             ccccC-CCh
Confidence            88773 554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.16  E-value=2.1e-11  Score=108.52  Aligned_cols=97  Identities=22%  Similarity=0.250  Sum_probs=60.4

Q ss_pred             CCCCCCCCCCccccceEe------cCCCCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccC
Q 037769           54 TNSWTEGTDCCSWDGVTC------DNVTGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGR  127 (200)
Q Consensus        54 ~~~W~~~~~~c~w~gv~c------~~~~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~  127 (200)
                      ...|....++|.|+|..+      ......++.|++  ++|.++ .+|.  .+.  ++|++|++++|.++.  +|.   .
T Consensus        12 w~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~l--s~n~L~-~lp~--~l~--~~L~~L~L~~N~l~~--lp~---~   79 (622)
T 3g06_A           12 WSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNV--GESGLT-TLPD--CLP--AHITTLVIPDNNLTS--LPA---L   79 (622)
T ss_dssp             HHHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEEC--CSSCCS-CCCS--CCC--TTCSEEEECSCCCSC--CCC---C
T ss_pred             HHHHHhcCCcchhccccccCcccccccCCCCcEEEe--cCCCcC-ccCh--hhC--CCCcEEEecCCCCCC--CCC---c
Confidence            345766678899966431      111134777888  777777 6665  443  677777777777764  554   4


Q ss_pred             CCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCC
Q 037769          128 LKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLT  166 (200)
Q Consensus       128 l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~  166 (200)
                      +++|++|+|++|.++ .+|.   .+++|++|+|++|+++
T Consensus        80 l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~  114 (622)
T 3g06_A           80 PPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT  114 (622)
T ss_dssp             CTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC
T ss_pred             CCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC
Confidence            566777777777766 3554   4455666666666553

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.14  E-value=3.3e-10  Score=97.22  Aligned_cols=83  Identities=24%  Similarity=0.329  Sum_probs=51.7

Q ss_pred             ccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCC
Q 037769          100 LFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNL  179 (200)
Q Consensus       100 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l  179 (200)
                      +..+++|++|++++|.+++  +|  +..+++|+.|++++|.+++.   .++.+++|+.|++++|++++    +|  ++.+
T Consensus       166 ~~~l~~L~~L~ls~n~l~~--l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~----ip--~~~l  232 (457)
T 3bz5_A          166 VTPQTQLTTLDCSFNKITE--LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE----ID--VTPL  232 (457)
T ss_dssp             CTTCTTCCEEECCSSCCCC--CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC----CC--CTTC
T ss_pred             cccCCcCCEEECCCCccce--ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc----cC--cccc
Confidence            4455566666666666655  33  55566666666666666643   25666677777777777742    44  5667


Q ss_pred             CCCCEEecccccCCcC
Q 037769          180 TKLSLLYLGATNMSLI  195 (200)
Q Consensus       180 ~~L~~L~Ls~N~l~g~  195 (200)
                      ++|++|++++|++++.
T Consensus       233 ~~L~~L~l~~N~l~~~  248 (457)
T 3bz5_A          233 TQLTYFDCSVNPLTEL  248 (457)
T ss_dssp             TTCSEEECCSSCCSCC
T ss_pred             CCCCEEEeeCCcCCCc
Confidence            7777777777777653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.13  E-value=2.8e-13  Score=103.47  Aligned_cols=105  Identities=20%  Similarity=0.262  Sum_probs=86.8

Q ss_pred             cEEEEEcccCCCCCeeccC------CCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCccccc
Q 037769           77 NVIGLDLYSSCSWLVGTID------DNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMS  150 (200)
Q Consensus        77 ~l~~L~L~~~~n~l~~~~p------~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~  150 (200)
                      .++.+++  +.+.+.|.+|      .  .+..+++|++|++++|.+++  +| .+..+++|++|++++|.++ .+|..+.
T Consensus        19 ~l~~l~l--~~~~l~~~~~~l~~l~~--~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           19 SVVATEA--EKVELHGMIPPIEKMDA--TLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             CCCCTTC--SEEECCBCCTTCCCCHH--HHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred             cccCcch--heeEeccccCcHhhhhH--HHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence            3444445  5555554443      3  57889999999999999987  67 8899999999999999999 7888888


Q ss_pred             CCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769          151 HSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL  194 (200)
Q Consensus       151 ~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g  194 (200)
                      .+++|++|++++|+++    .+| .+..+++|++|++++|++++
T Consensus        91 ~~~~L~~L~L~~N~l~----~l~-~~~~l~~L~~L~l~~N~i~~  129 (198)
T 1ds9_A           91 VADTLEELWISYNQIA----SLS-GIEKLVNLRVLYMSNNKITN  129 (198)
T ss_dssp             HHHHCSEEEEEEEECC----CHH-HHHHHHHSSEEEESEEECCC
T ss_pred             cCCcCCEEECcCCcCC----cCC-ccccCCCCCEEECCCCcCCc
Confidence            8899999999999994    466 58889999999999999984

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.13  E-value=1.1e-10  Score=104.00  Aligned_cols=82  Identities=21%  Similarity=0.119  Sum_probs=65.7

Q ss_pred             CCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCC
Q 037769          104 SHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLS  183 (200)
Q Consensus       104 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~  183 (200)
                      ++|+.|++++|.+++  +|   ..+++|+.|++++|.++ .+|.   .+++|+.|+|++|+++    .+|..+.++++|+
T Consensus       221 ~~L~~L~Ls~N~L~~--lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~----~lp~~l~~l~~L~  287 (622)
T 3g06_A          221 SGLKELIVSGNRLTS--LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT----RLPESLIHLSSET  287 (622)
T ss_dssp             TTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC----SCCGGGGGSCTTC
T ss_pred             CCCCEEEccCCccCc--CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC----cCCHHHhhccccC
Confidence            567777888887776  45   45678888888888887 5665   5678999999999883    6788899999999


Q ss_pred             EEecccccCCcCCCC
Q 037769          184 LLYLGATNMSLIKPF  198 (200)
Q Consensus       184 ~L~Ls~N~l~g~iP~  198 (200)
                      .|+|++|+++|.+|.
T Consensus       288 ~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          288 TVNLEGNPLSERTLQ  302 (622)
T ss_dssp             EEECCSCCCCHHHHH
T ss_pred             EEEecCCCCCCcCHH
Confidence            999999999886653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.06  E-value=3e-11  Score=100.93  Aligned_cols=115  Identities=17%  Similarity=0.195  Sum_probs=74.3

Q ss_pred             CcEEEEEcccCCCCCe-eccC---CCccccCCCCCcEEEccCCCCCCCC----CChhccCCCCCCEEeccCCcCC----C
Q 037769           76 GNVIGLDLYSSCSWLV-GTID---DNSTLFHLSHLQSLNLAYSNFLGSQ----LSPEFGRLKELTYLNLSASNFG----G  143 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~-~~~p---~~~~l~~l~~L~~L~L~~n~l~~~~----~p~~l~~l~~L~~L~Ls~n~l~----~  143 (200)
                      .+++.|++  ++|.+. +.++   .  .+..+++|++|++++|.++...    .|..+..+++|+.|+|++|.++    +
T Consensus       159 ~~L~~L~L--~~n~l~~~~~~~l~~--~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~  234 (386)
T 2ca6_A          159 PPLRSIIC--GRNRLENGSMKEWAK--TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS  234 (386)
T ss_dssp             CCCCEEEC--CSSCCTGGGHHHHHH--HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHH
T ss_pred             CCCcEEEC--CCCCCCcHHHHHHHH--HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHH
Confidence            35667777  666665 2233   2  3556677777777777776210    2335667777888888888774    4


Q ss_pred             CCcccccCCCCCCEEeccCCcCCCC-CCchhhhhc--CCCCCCEEecccccCCc
Q 037769          144 LVPYEMSHSSKLTHLDLSFCVLTIE-HRTFDLLAS--NLTKLSLLYLGATNMSL  194 (200)
Q Consensus       144 ~~P~~l~~l~~L~~L~Ls~N~l~~~-~~~lp~~l~--~l~~L~~L~Ls~N~l~g  194 (200)
                      .+|..+..+++|++|+|++|.+++. ...++..+.  .+++|++|+|++|.+++
T Consensus       235 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          235 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             HHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             HHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence            5677777777888888888877421 011455553  37788888888888775

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.06  E-value=7.1e-10  Score=95.08  Aligned_cols=107  Identities=17%  Similarity=0.168  Sum_probs=60.6

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .++++|++  ++|.+.+ +|.   +.++++|++|++++|.+++  +|..   ..+|++|++++|.+++ +| .++.+++|
T Consensus       131 ~~L~~L~L--~~n~l~~-lp~---~~~l~~L~~L~l~~N~l~~--lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L  197 (454)
T 1jl5_A          131 PLLEYLGV--SNNQLEK-LPE---LQNSSFLKIIDVDNNSLKK--LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFL  197 (454)
T ss_dssp             TTCCEEEC--CSSCCSS-CCC---CTTCTTCCEEECCSSCCSC--CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTC
T ss_pred             CCCCEEEC--cCCCCCC-Ccc---cCCCCCCCEEECCCCcCcc--cCCC---cccccEEECcCCcCCc-Cc-cccCCCCC
Confidence            35666666  6666654 443   6666667777776666664  4432   2356666666666653 44 35555656


Q ss_pred             CEEeccCCcCCCCC----------------CchhhhhcCCCCCCEEecccccCCcCCC
Q 037769          156 THLDLSFCVLTIEH----------------RTFDLLASNLTKLSLLYLGATNMSLIKP  197 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~----------------~~lp~~l~~l~~L~~L~Ls~N~l~g~iP  197 (200)
                      ++|++++|++++..                ..+| .++.+++|++|++++|++++ +|
T Consensus       198 ~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~-l~  253 (454)
T 1jl5_A          198 TAIYADNNSLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKT-LP  253 (454)
T ss_dssp             CEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CC
T ss_pred             CEEECCCCcCCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCc-cc
Confidence            55555555553210                1234 25666667777777776664 44

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.02  E-value=5.5e-10  Score=92.33  Aligned_cols=104  Identities=15%  Similarity=0.104  Sum_probs=84.7

Q ss_pred             EEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCC-hhccCCCCCCEEeccCCcCCCCCcc-cccCCCCCCE
Q 037769           80 GLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLS-PEFGRLKELTYLNLSASNFGGLVPY-EMSHSSKLTH  157 (200)
Q Consensus        80 ~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p-~~l~~l~~L~~L~Ls~n~l~~~~P~-~l~~l~~L~~  157 (200)
                      +++.  ++++++ .+|.  .+  .+++++|+|++|.|+.  +| ..|.++++|++|+|++|.+.+.+|. .|.++++++.
T Consensus        13 ~v~C--~~~~Lt-~iP~--~l--~~~l~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~   83 (350)
T 4ay9_X           13 VFLC--QESKVT-EIPS--DL--PRNAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE   83 (350)
T ss_dssp             EEEE--ESTTCC-SCCT--TC--CTTCSEEEEESCCCSE--ECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE
T ss_pred             EEEe--cCCCCC-ccCc--Cc--CCCCCEEEccCCcCCC--cCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh
Confidence            4677  888888 6777  55  4689999999999997  55 4689999999999999999877765 5788888775


Q ss_pred             -EeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcC
Q 037769          158 -LDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLI  195 (200)
Q Consensus       158 -L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~  195 (200)
                       +.+..|+++   ...|..|..+++|++|++++|.+.+.
T Consensus        84 ~l~~~~N~l~---~l~~~~f~~l~~L~~L~l~~n~l~~~  119 (350)
T 4ay9_X           84 IRIEKANNLL---YINPEAFQNLPNLQYLLISNTGIKHL  119 (350)
T ss_dssp             EEEEEETTCC---EECTTSBCCCTTCCEEEEEEECCSSC
T ss_pred             hhcccCCccc---ccCchhhhhccccccccccccccccC
Confidence             566778884   23356789999999999999999863

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.02  E-value=5.6e-11  Score=98.70  Aligned_cols=116  Identities=23%  Similarity=0.240  Sum_probs=83.7

Q ss_pred             cEEEEEcccCCCCCeeccCCCccccCC-----CCCcEEEccCCCCCCCCCChh----ccCC-CCCCEEeccCCcCCCCCc
Q 037769           77 NVIGLDLYSSCSWLVGTIDDNSTLFHL-----SHLQSLNLAYSNFLGSQLSPE----FGRL-KELTYLNLSASNFGGLVP  146 (200)
Q Consensus        77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l-----~~L~~L~L~~n~l~~~~~p~~----l~~l-~~L~~L~Ls~n~l~~~~P  146 (200)
                      ++++|+|  ++|.+.+..+.  .+..+     ++|++|++++|.+++. .+..    +..+ ++|++|++++|.+++..+
T Consensus        52 ~L~~L~L--s~N~l~~~~~~--~l~~~l~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  126 (362)
T 3goz_A           52 SVTSLNL--SGNSLGFKNSD--ELVQILAAIPANVTSLNLSGNFLSYK-SSDELVKTLAAIPFTITVLDLGWNDFSSKSS  126 (362)
T ss_dssp             TCCEEEC--CSSCGGGSCHH--HHHHHHHTSCTTCCEEECCSSCGGGS-CHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred             ceeEEEC--cCCCCCHHHHH--HHHHHHhccCCCccEEECcCCcCChH-HHHHHHHHHHhCCCCccEEECcCCcCCcHHH
Confidence            7889999  88888765554  45554     8899999999998865 4443    3444 789999999999886555


Q ss_pred             ccc----cC-CCCCCEEeccCCcCCCC-CCchhhhhcCCC-CCCEEecccccCCcCCC
Q 037769          147 YEM----SH-SSKLTHLDLSFCVLTIE-HRTFDLLASNLT-KLSLLYLGATNMSLIKP  197 (200)
Q Consensus       147 ~~l----~~-l~~L~~L~Ls~N~l~~~-~~~lp~~l~~l~-~L~~L~Ls~N~l~g~iP  197 (200)
                      ..+    .. .++|++|+|++|.+++. ...++..+..++ +|++|+|++|++++..+
T Consensus       127 ~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~  184 (362)
T 3goz_A          127 SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNC  184 (362)
T ss_dssp             HHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH
T ss_pred             HHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhH
Confidence            443    33 36899999999988521 013456666766 89999999999876543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.01  E-value=7.7e-11  Score=97.87  Aligned_cols=114  Identities=25%  Similarity=0.252  Sum_probs=88.3

Q ss_pred             CcEEEEEcccCCCCCeeccC----CCccccCCC-CCcEEEccCCCCCCCCCChhccCC-----CCCCEEeccCCcCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTID----DNSTLFHLS-HLQSLNLAYSNFLGSQLSPEFGRL-----KELTYLNLSASNFGGLV  145 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p----~~~~l~~l~-~L~~L~L~~n~l~~~~~p~~l~~l-----~~L~~L~Ls~n~l~~~~  145 (200)
                      .+++.|++  ++|.+.+..+    .  .+..++ +|++|++++|.++.. .+..+..+     ++|++|+|++|.+++..
T Consensus        22 ~~L~~L~L--s~n~l~~~~~~~l~~--~l~~~~~~L~~L~Ls~N~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~   96 (362)
T 3goz_A           22 HGVTSLDL--SLNNLYSISTVELIQ--AFANTPASVTSLNLSGNSLGFK-NSDELVQILAAIPANVTSLNLSGNFLSYKS   96 (362)
T ss_dssp             TTCCEEEC--TTSCGGGSCHHHHHH--HHHTCCTTCCEEECCSSCGGGS-CHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred             CCceEEEc--cCCCCChHHHHHHHH--HHHhCCCceeEEECcCCCCCHH-HHHHHHHHHhccCCCccEEECcCCcCChHH
Confidence            46999999  9999886554    5  677888 899999999999876 56666664     99999999999998766


Q ss_pred             cccc----cCC-CCCCEEeccCCcCCCCCC-chhhhhcCC-CCCCEEecccccCCc
Q 037769          146 PYEM----SHS-SKLTHLDLSFCVLTIEHR-TFDLLASNL-TKLSLLYLGATNMSL  194 (200)
Q Consensus       146 P~~l----~~l-~~L~~L~Ls~N~l~~~~~-~lp~~l~~l-~~L~~L~Ls~N~l~g  194 (200)
                      +..+    ..+ ++|++|+|++|.+++... .+...+..+ ++|++|+|++|.+.+
T Consensus        97 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  152 (362)
T 3goz_A           97 SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI  152 (362)
T ss_dssp             HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred             HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence            6643    444 899999999999953110 122334553 699999999999985

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.84  E-value=1.9e-10  Score=97.70  Aligned_cols=90  Identities=19%  Similarity=0.135  Sum_probs=51.6

Q ss_pred             CCcEEEccCCCCCCCC---CChhccCCCCCCEEeccCCcCCCCCcccccC-----CCCCCEEeccCCcCCCC-CCchhhh
Q 037769          105 HLQSLNLAYSNFLGSQ---LSPEFGRLKELTYLNLSASNFGGLVPYEMSH-----SSKLTHLDLSFCVLTIE-HRTFDLL  175 (200)
Q Consensus       105 ~L~~L~L~~n~l~~~~---~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~-----l~~L~~L~Ls~N~l~~~-~~~lp~~  175 (200)
                      +|++|++++|.++...   ++..+..+++|+.|++++|.+++..+..+..     .++|++|++++|.+++. ...+|..
T Consensus       314 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~  393 (461)
T 1z7x_W          314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT  393 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             cceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH
Confidence            4444455444444320   2333445567777777777665433332221     55777777777777310 0146667


Q ss_pred             hcCCCCCCEEecccccCCc
Q 037769          176 ASNLTKLSLLYLGATNMSL  194 (200)
Q Consensus       176 l~~l~~L~~L~Ls~N~l~g  194 (200)
                      +..+++|++|++++|++++
T Consensus       394 l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          394 LLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             HHHCCCCCEEECCSSSCCH
T ss_pred             HHhCCCccEEECCCCCCCH
Confidence            7777888888888887764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.81  E-value=1.9e-10  Score=92.26  Aligned_cols=68  Identities=26%  Similarity=0.223  Sum_probs=37.5

Q ss_pred             CCCCCCEEeccCCcCCC--CCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCC
Q 037769          127 RLKELTYLNLSASNFGG--LVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKP  197 (200)
Q Consensus       127 ~l~~L~~L~Ls~n~l~~--~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP  197 (200)
                      .+++|+.|+|++|.+++  .+|..+..+++|+.|+|++|++++. ..+ ..+..+ +|++|+|++|++.+.+|
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l-~~l~~l-~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-REL-DKIKGL-KLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGG-GGGTTS-CCSEEECTTSTTGGGCS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhh-hhcccC-CcceEEccCCcCccccC
Confidence            35666666666666665  3344455666666666666666421 111 112223 66666666666665554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.77  E-value=2.3e-10  Score=97.19  Aligned_cols=110  Identities=15%  Similarity=0.036  Sum_probs=54.9

Q ss_pred             cEEEEEcccCCCCCeec----cCCCccccCCCCCcEEEccCCCCCCCCCChhcc-----CCCCCCEEeccCCcCCCC---
Q 037769           77 NVIGLDLYSSCSWLVGT----IDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFG-----RLKELTYLNLSASNFGGL---  144 (200)
Q Consensus        77 ~l~~L~L~~~~n~l~~~----~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~-----~l~~L~~L~Ls~n~l~~~---  144 (200)
                      +++.|++  ++|.+...    ++.  .+..+++|++|++++|.+... .+..+.     ..++|+.|++++|.+++.   
T Consensus       257 ~L~~L~L--~~n~l~~~~~~~l~~--~l~~~~~L~~L~Ls~n~i~~~-~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  331 (461)
T 1z7x_W          257 RLRTLWI--WECGITAKGCGDLCR--VLRAKESLKELSLAGNELGDE-GARLLCETLLEPGCQLESLWVKSCSFTAACCS  331 (461)
T ss_dssp             CCCEEEC--TTSCCCHHHHHHHHH--HHHHCTTCCEEECTTCCCHHH-HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred             CceEEEC--cCCCCCHHHHHHHHH--HHhhCCCcceEECCCCCCchH-HHHHHHHHhccCCccceeeEcCCCCCchHHHH
Confidence            4555555  55554432    333  344455555555555555432 111111     124566666666665543   


Q ss_pred             -CcccccCCCCCCEEeccCCcCCCCCCchhh----hhcC-CCCCCEEecccccCCc
Q 037769          145 -VPYEMSHSSKLTHLDLSFCVLTIEHRTFDL----LASN-LTKLSLLYLGATNMSL  194 (200)
Q Consensus       145 -~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~----~l~~-l~~L~~L~Ls~N~l~g  194 (200)
                       ++..+..+++|++|++++|.++   ...+.    .+.. .++|++|++++|.+++
T Consensus       332 ~l~~~l~~~~~L~~L~Ls~n~i~---~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~  384 (461)
T 1z7x_W          332 HFSSVLAQNRFLLELQISNNRLE---DAGVRELCQGLGQPGSVLRVLWLADCDVSD  384 (461)
T ss_dssp             HHHHHHHHCSSCCEEECCSSBCH---HHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred             HHHHHHhhCCCccEEEccCCccc---cccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence             3444555566666666666663   11122    2221 5567777777776663

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.76  E-value=9.7e-10  Score=92.03  Aligned_cols=91  Identities=16%  Similarity=0.206  Sum_probs=50.7

Q ss_pred             CCCCcEEEccCCCCCCCC---CChhccCCCCCCEEeccCCcCCCC----CcccccCCCCCCEEeccCCcCCCC-CCchhh
Q 037769          103 LSHLQSLNLAYSNFLGSQ---LSPEFGRLKELTYLNLSASNFGGL----VPYEMSHSSKLTHLDLSFCVLTIE-HRTFDL  174 (200)
Q Consensus       103 l~~L~~L~L~~n~l~~~~---~p~~l~~l~~L~~L~Ls~n~l~~~----~P~~l~~l~~L~~L~Ls~N~l~~~-~~~lp~  174 (200)
                      .+.|++|+|++|.++...   ++..+...++|++|+|++|.++..    ++..+...++|++|+|++|.++.. ...+..
T Consensus       154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~  233 (372)
T 3un9_A          154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR  233 (372)
T ss_dssp             TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence            355666666666654310   223335566677777777666531    234455556677777777766310 012334


Q ss_pred             hhcCCCCCCEEecccccCC
Q 037769          175 LASNLTKLSLLYLGATNMS  193 (200)
Q Consensus       175 ~l~~l~~L~~L~Ls~N~l~  193 (200)
                      .+...++|++|+|++|.|+
T Consensus       234 ~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          234 AAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHCSSCCEEECTTSSCC
T ss_pred             HHHhCCCCCEEeccCCCCC
Confidence            4555667777777777665

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.64  E-value=2.6e-09  Score=89.44  Aligned_cols=115  Identities=15%  Similarity=0.073  Sum_probs=84.7

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhc-----cCCCCCCEEeccCCcCCC----CCc
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEF-----GRLKELTYLNLSASNFGG----LVP  146 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l-----~~l~~L~~L~Ls~n~l~~----~~P  146 (200)
                      ..++.|+|  ++|.+....... ....+++|+.|+|++|.++.. -...+     ...+.|+.|+|++|.++.    .++
T Consensus       101 ~~L~~L~L--s~n~l~~~~~~~-l~~~L~~L~~L~Ls~n~l~~~-~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~  176 (372)
T 3un9_A          101 HALDEVNL--ASCQLDPAGLRT-LLPVFLRARKLGLQLNSLGPE-ACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLM  176 (372)
T ss_dssp             SCEEEEEC--TTCCCCHHHHHH-THHHHHTEEEEECCSSCCCHH-HHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHH
T ss_pred             CCceEEEe--cCCCCCHHHHHH-HHHHHHhccHhhcCCCCCCHH-HHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHH
Confidence            57999999  999986433220 233467899999999998753 22233     346889999999999864    244


Q ss_pred             ccccCCCCCCEEeccCCcCCCC-CCchhhhhcCCCCCCEEecccccCCc
Q 037769          147 YEMSHSSKLTHLDLSFCVLTIE-HRTFDLLASNLTKLSLLYLGATNMSL  194 (200)
Q Consensus       147 ~~l~~l~~L~~L~Ls~N~l~~~-~~~lp~~l~~l~~L~~L~Ls~N~l~g  194 (200)
                      ..+..+++|++|+|++|.+++. ...++..+...++|+.|+|++|.|+.
T Consensus       177 ~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          177 EGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             HHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred             HHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence            4567789999999999999421 01345677888899999999999874

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.59  E-value=4.3e-09  Score=92.09  Aligned_cols=93  Identities=13%  Similarity=0.160  Sum_probs=63.2

Q ss_pred             ccCCCCCcEEEccCCC--CCCCCCChhcc-CCCCCCEEeccCCcCCC-CCcccccCCCCCCEEeccCCcCCCCCCchhhh
Q 037769          100 LFHLSHLQSLNLAYSN--FLGSQLSPEFG-RLKELTYLNLSASNFGG-LVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLL  175 (200)
Q Consensus       100 l~~l~~L~~L~L~~n~--l~~~~~p~~l~-~l~~L~~L~Ls~n~l~~-~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~  175 (200)
                      +.++++|+.|+++.+.  +++. .+..+. .+++|++|++++|.+++ .++..+..+++|+.|+|++|.++  ...++..
T Consensus       432 ~~~~~~L~~L~L~~~~~~l~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~  508 (592)
T 3ogk_B          432 LIGCKKLRRFAFYLRQGGLTDL-GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS--ERAIAAA  508 (592)
T ss_dssp             HHHCTTCCEEEEECCGGGCCHH-HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB--HHHHHHH
T ss_pred             HHhCCCCCEEEEecCCCCccHH-HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc--HHHHHHH
Confidence            4446666666665432  3332 222232 37788888888888875 34555678889999999999884  2345666


Q ss_pred             hcCCCCCCEEecccccCCcC
Q 037769          176 ASNLTKLSLLYLGATNMSLI  195 (200)
Q Consensus       176 l~~l~~L~~L~Ls~N~l~g~  195 (200)
                      +..+++|++|++++|++++.
T Consensus       509 ~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          509 VTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHCSSCCEEEEESCBCCTT
T ss_pred             HHhcCccCeeECcCCcCCHH
Confidence            67889999999999988754

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.56  E-value=5e-08  Score=78.09  Aligned_cols=81  Identities=27%  Similarity=0.262  Sum_probs=63.9

Q ss_pred             cCCCCCcEEEccCCCCCCCC-CChhccCCCCCCEEeccCCcCCCCCcccccCCC--CCCEEeccCCcCCCCCCchh----
Q 037769          101 FHLSHLQSLNLAYSNFLGSQ-LSPEFGRLKELTYLNLSASNFGGLVPYEMSHSS--KLTHLDLSFCVLTIEHRTFD----  173 (200)
Q Consensus       101 ~~l~~L~~L~L~~n~l~~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~--~L~~L~Ls~N~l~~~~~~lp----  173 (200)
                      .++++|+.|+|++|.+++.. +|..+..+++|+.|+|++|.+++.  ..+..+.  +|+.|+|++|.+++   .+|    
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~---~~~~~~~  241 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD---TFRDQST  241 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG---GCSSHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc---ccCcchh
Confidence            35789999999999999831 456677899999999999999964  3344444  99999999999953   232    


Q ss_pred             ---hhhcCCCCCCEEe
Q 037769          174 ---LLASNLTKLSLLY  186 (200)
Q Consensus       174 ---~~l~~l~~L~~L~  186 (200)
                         ..+..+++|+.||
T Consensus       242 y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          242 YISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHHHCTTCCEES
T ss_pred             HHHHHHHHCcccCeEC
Confidence               3578899999887

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.49  E-value=2.8e-08  Score=75.01  Aligned_cols=114  Identities=11%  Similarity=0.048  Sum_probs=86.2

Q ss_pred             CcEEEEEcccCCC-CCeec----cCCCccccCCCCCcEEEccCCCCCCCC---CChhccCCCCCCEEeccCCcCCCC---
Q 037769           76 GNVIGLDLYSSCS-WLVGT----IDDNSTLFHLSHLQSLNLAYSNFLGSQ---LSPEFGRLKELTYLNLSASNFGGL---  144 (200)
Q Consensus        76 ~~l~~L~L~~~~n-~l~~~----~p~~~~l~~l~~L~~L~L~~n~l~~~~---~p~~l~~l~~L~~L~Ls~n~l~~~---  144 (200)
                      ..+++|+|  ++| .+...    +..  .+...+.|++|+|++|.+....   +...+...+.|++|+|++|.+...   
T Consensus        36 ~~L~~L~L--~~n~~i~~~g~~~l~~--~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           36 PDLEEVNL--NNIMNIPVPTLKACAE--ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             TTCCEEEC--TTCTTCCHHHHHHHHH--HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             CCCCEEEe--cCCCCCCHHHHHHHHH--HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            67999999  999 87632    334  5667789999999999986421   233455668899999999999853   


Q ss_pred             -CcccccCCCCCCEEec--cCCcCCCC-CCchhhhhcCCCCCCEEecccccCC
Q 037769          145 -VPYEMSHSSKLTHLDL--SFCVLTIE-HRTFDLLASNLTKLSLLYLGATNMS  193 (200)
Q Consensus       145 -~P~~l~~l~~L~~L~L--s~N~l~~~-~~~lp~~l~~l~~L~~L~Ls~N~l~  193 (200)
                       +...+...+.|++|+|  ++|.++.. ...+...+...++|++|+|++|.+.
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence             4556777889999999  88999421 0124556777799999999999874

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.37  E-value=7.5e-07  Score=72.70  Aligned_cols=101  Identities=20%  Similarity=0.104  Sum_probs=74.5

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCC-EEeccCCcCCCCCcccccCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELT-YLNLSASNFGGLVPYEMSHSSK  154 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~-~L~Ls~n~l~~~~P~~l~~l~~  154 (200)
                      .+++.|+|  ++|.++..-..  .|.++++|+.+++..| ++.. -+..|.++++|+ .++++. .++..-+..|.++++
T Consensus       226 ~~L~~l~L--~~n~i~~I~~~--aF~~~~~L~~l~l~~n-i~~I-~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~  298 (329)
T 3sb4_A          226 PNLVSLDI--SKTNATTIPDF--TFAQKKYLLKIKLPHN-LKTI-GQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDN  298 (329)
T ss_dssp             TTCCEEEC--TTBCCCEECTT--TTTTCTTCCEEECCTT-CCEE-CTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTT
T ss_pred             CCCeEEEC--CCCCcceecHh--hhhCCCCCCEEECCcc-ccee-hHHHhhCChhccEEEEEcc-cceEEchhhhhCCcc
Confidence            46888888  88887733334  6888888888888887 6554 455678888888 888887 666344467888888


Q ss_pred             CCEEeccCCcCCCCCCchh-hhhcCCCCCCEEec
Q 037769          155 LTHLDLSFCVLTIEHRTFD-LLASNLTKLSLLYL  187 (200)
Q Consensus       155 L~~L~Ls~N~l~~~~~~lp-~~l~~l~~L~~L~L  187 (200)
                      |+.++++.|+++    .++ ..|.++++|+.++.
T Consensus       299 L~~l~l~~n~i~----~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          299 LRYVLATGDKIT----TLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEEEEECSSCCC----EECTTTTCTTCCCCEEEC
T ss_pred             CCEEEeCCCccC----ccchhhhcCCcchhhhcc
Confidence            888888888883    333 46888888888764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.37  E-value=2.4e-07  Score=80.92  Aligned_cols=63  Identities=14%  Similarity=0.127  Sum_probs=32.1

Q ss_pred             CcEEEEEcccCCCCCeec----cCCCccccCCCCCcEEEccCCCCCCC---CCChhccCCCCCCEEeccCCcCC
Q 037769           76 GNVIGLDLYSSCSWLVGT----IDDNSTLFHLSHLQSLNLAYSNFLGS---QLSPEFGRLKELTYLNLSASNFG  142 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~----~p~~~~l~~l~~L~~L~L~~n~l~~~---~~p~~l~~l~~L~~L~Ls~n~l~  142 (200)
                      .++++|+|  ++|.+.+.    ++.  .+..+++|++|++++|.+++.   .++..+..+++|+.|++++|.+.
T Consensus       164 ~~L~~L~L--~~~~~~~~~~~~l~~--~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~  233 (592)
T 3ogk_B          164 RKIKTLLM--EESSFSEKDGKWLHE--LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL  233 (592)
T ss_dssp             TTCSEEEC--TTCEEECCCSHHHHH--HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG
T ss_pred             CCCCEEEC--ccccccCcchhHHHH--HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH
Confidence            45666666  66665433    222  334455666666666655421   02223344555666666555543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.27  E-value=7.5e-08  Score=84.11  Aligned_cols=109  Identities=15%  Similarity=0.167  Sum_probs=68.2

Q ss_pred             CcEEEEEcccCCCCCeeccCCCcccc-CCCCCcEEEccCC-CCCCCCCChhccCCCCCCEEeccCCcCCCCCcccc----
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLF-HLSHLQSLNLAYS-NFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEM----  149 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~-~l~~L~~L~L~~n-~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l----  149 (200)
                      .+++.|++  +++.+.+....  .+. .+++|++|++++| .++...++..+..+++|++|++++|.+++..+..+    
T Consensus       105 ~~L~~L~L--~~~~~~~~~~~--~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~  180 (594)
T 2p1m_B          105 TWLEEIRL--KRMVVTDDCLE--LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP  180 (594)
T ss_dssp             TTCCEEEE--ESCBCCHHHHH--HHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred             CCCCeEEe--eCcEEcHHHHH--HHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence            46788888  88777655544  444 5778888888877 44322123334467788888888887765443333    


Q ss_pred             cCCCCCCEEeccCCc--CCCCCCchhhhhcCCCCCCEEecccc
Q 037769          150 SHSSKLTHLDLSFCV--LTIEHRTFDLLASNLTKLSLLYLGAT  190 (200)
Q Consensus       150 ~~l~~L~~L~Ls~N~--l~~~~~~lp~~l~~l~~L~~L~Ls~N  190 (200)
                      ..+++|+.|++++|.  ++  ...++..+.++++|++|++++|
T Consensus       181 ~~~~~L~~L~l~~~~~~~~--~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          181 DTYTSLVSLNISCLASEVS--FSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             TTCCCCCEEECTTCCSCCC--HHHHHHHHHHCTTCCEEECCTT
T ss_pred             hcCCcCcEEEecccCCcCC--HHHHHHHHHhCCCCcEEecCCC
Confidence            355678888887775  31  1123333455677777777776

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.23  E-value=5.2e-08  Score=85.12  Aligned_cols=90  Identities=19%  Similarity=0.236  Sum_probs=51.2

Q ss_pred             ccCCCCCcEEEccCCCCCCCCCChhccC-CCCCCEEeccCCcCCCCCcccc-cCCCCCCEEeccCCcCCCCCCchhhhhc
Q 037769          100 LFHLSHLQSLNLAYSNFLGSQLSPEFGR-LKELTYLNLSASNFGGLVPYEM-SHSSKLTHLDLSFCVLTIEHRTFDLLAS  177 (200)
Q Consensus       100 l~~l~~L~~L~L~~n~l~~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~P~~l-~~l~~L~~L~Ls~N~l~~~~~~lp~~l~  177 (200)
                      +..+++|+.|++++ .++.. .+..+.. +++|+.|++++|.+++..+..+ ..+++|+.|+|++|.+++  ..+...+.
T Consensus       428 ~~~~~~L~~L~L~~-~l~~~-~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~--~~~~~~~~  503 (594)
T 2p1m_B          428 VEHCKDLRRLSLSG-LLTDK-VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD--KALLANAS  503 (594)
T ss_dssp             HHHCTTCCEEECCS-SCCHH-HHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH--HHHHHTGG
T ss_pred             HhhCCCccEEeecC-cccHH-HHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH--HHHHHHHH
Confidence            34455666666654 44332 2233333 6667777777777654433333 456777777777777731  12233345


Q ss_pred             CCCCCCEEecccccCC
Q 037769          178 NLTKLSLLYLGATNMS  193 (200)
Q Consensus       178 ~l~~L~~L~Ls~N~l~  193 (200)
                      .+++|++|++++|+++
T Consensus       504 ~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          504 KLETMRSLWMSSCSVS  519 (594)
T ss_dssp             GGGGSSEEEEESSCCB
T ss_pred             hCCCCCEEeeeCCCCC
Confidence            5677777777777663

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.16  E-value=4.1e-07  Score=68.55  Aligned_cols=96  Identities=9%  Similarity=0.013  Sum_probs=72.7

Q ss_pred             cccCCCCCcEEEccCC-CCCCCC---CChhccCCCCCCEEeccCCcCCCC----CcccccCCCCCCEEeccCCcCCCC-C
Q 037769           99 TLFHLSHLQSLNLAYS-NFLGSQ---LSPEFGRLKELTYLNLSASNFGGL----VPYEMSHSSKLTHLDLSFCVLTIE-H  169 (200)
Q Consensus        99 ~l~~l~~L~~L~L~~n-~l~~~~---~p~~l~~l~~L~~L~Ls~n~l~~~----~P~~l~~l~~L~~L~Ls~N~l~~~-~  169 (200)
                      .+...+.|++|+|++| .+....   +...+...++|++|+|++|.+...    +...+...+.|++|+|++|.++.. .
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            5677899999999999 886421   234566788999999999999742    334455668899999999999520 0


Q ss_pred             CchhhhhcCCCCCCEEec--ccccCCc
Q 037769          170 RTFDLLASNLTKLSLLYL--GATNMSL  194 (200)
Q Consensus       170 ~~lp~~l~~l~~L~~L~L--s~N~l~g  194 (200)
                      ..+...+...++|++|+|  ++|.|..
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~  137 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGN  137 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCH
Confidence            124567788899999999  8898863

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.98  E-value=9.3e-06  Score=66.14  Aligned_cols=88  Identities=16%  Similarity=0.127  Sum_probs=72.4

Q ss_pred             CCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCC-EEeccCCcCCCCCCch-hhhhcCCC
Q 037769          103 LSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT-HLDLSFCVLTIEHRTF-DLLASNLT  180 (200)
Q Consensus       103 l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~-~L~Ls~N~l~~~~~~l-p~~l~~l~  180 (200)
                      +++|+.+++.+|.++.. -+..|..+++|+.++++.| +...-+..|.++.+|+ .+++.. .++    .+ +..|.+++
T Consensus       225 ~~~L~~l~L~~n~i~~I-~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~----~I~~~aF~~c~  297 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTI-PDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT----AIEFGAFMGCD  297 (329)
T ss_dssp             CTTCCEEECTTBCCCEE-CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC----EECTTTTTTCT
T ss_pred             cCCCeEEECCCCCccee-cHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce----EEchhhhhCCc
Confidence            78999999999999874 4567899999999999998 6644445799999999 999988 562    34 46799999


Q ss_pred             CCCEEecccccCCcCCCC
Q 037769          181 KLSLLYLGATNMSLIKPF  198 (200)
Q Consensus       181 ~L~~L~Ls~N~l~g~iP~  198 (200)
                      +|+.++++.|.+.. |+.
T Consensus       298 ~L~~l~l~~n~i~~-I~~  314 (329)
T 3sb4_A          298 NLRYVLATGDKITT-LGD  314 (329)
T ss_dssp             TEEEEEECSSCCCE-ECT
T ss_pred             cCCEEEeCCCccCc-cch
Confidence            99999999998873 443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.92  E-value=1.4e-06  Score=72.65  Aligned_cols=67  Identities=21%  Similarity=0.246  Sum_probs=41.0

Q ss_pred             CCCCCCEEeccCCcCCCCCcccc---cCCCCCCEEeccCCcCCCC-CCchhhhhcCCCCCCEEecccccCC
Q 037769          127 RLKELTYLNLSASNFGGLVPYEM---SHSSKLTHLDLSFCVLTIE-HRTFDLLASNLTKLSLLYLGATNMS  193 (200)
Q Consensus       127 ~l~~L~~L~Ls~n~l~~~~P~~l---~~l~~L~~L~Ls~N~l~~~-~~~lp~~l~~l~~L~~L~Ls~N~l~  193 (200)
                      .+++|++|+|.+|.+.+..+..+   ..+++|++|+|+.|.+++. ...++..+.++++|+.|+|+.|.|+
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            36777777777777654332222   2466788888888777420 0123334456678888888888765

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.84  E-value=7.8e-06  Score=61.25  Aligned_cols=84  Identities=14%  Similarity=0.089  Sum_probs=51.5

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCC-CCCCCCChhccCC----CCCCEEeccCCc-CCCCCcccc
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSN-FLGSQLSPEFGRL----KELTYLNLSASN-FGGLVPYEM  149 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~-l~~~~~p~~l~~l----~~L~~L~Ls~n~-l~~~~P~~l  149 (200)
                      -+++.||+  +++.++..--.  .+.++++|+.|+|++|. ++.. --..+..+    ++|+.|+|++|. ++..--..+
T Consensus        61 ~~L~~LDL--s~~~Itd~GL~--~L~~~~~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L  135 (176)
T 3e4g_A           61 YKIQAIDA--TDSCIMSIGFD--HMEGLQYVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL  135 (176)
T ss_dssp             CCEEEEEE--ESCCCCGGGGG--GGTTCSCCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG
T ss_pred             ceEeEEeC--cCCCccHHHHH--HhcCCCCCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH
Confidence            36788888  77776643333  46677788888888775 4432 12234443    357777777764 553322345


Q ss_pred             cCCCCCCEEeccCCc
Q 037769          150 SHSSKLTHLDLSFCV  164 (200)
Q Consensus       150 ~~l~~L~~L~Ls~N~  164 (200)
                      ..+++|++|+|+++.
T Consensus       136 ~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          136 HHFRNLKYLFLSDLP  150 (176)
T ss_dssp             GGCTTCCEEEEESCT
T ss_pred             hcCCCCCEEECCCCC
Confidence            667777777777764

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.74  E-value=7.1e-06  Score=61.50  Aligned_cols=84  Identities=12%  Similarity=0.177  Sum_probs=63.8

Q ss_pred             CCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCc-CCCCCcccccCC----CCCCEEeccCCc-CCCCCCchhhhhc
Q 037769          104 SHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASN-FGGLVPYEMSHS----SKLTHLDLSFCV-LTIEHRTFDLLAS  177 (200)
Q Consensus       104 ~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~P~~l~~l----~~L~~L~Ls~N~-l~~~~~~lp~~l~  177 (200)
                      -.|+.|+++++.++.. --..+..+++|+.|+|++|. ++..--..+..+    ++|++|+|+++. +|.  ..+ ..+.
T Consensus        61 ~~L~~LDLs~~~Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD--~Gl-~~L~  136 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD--KGI-IALH  136 (176)
T ss_dssp             CCEEEEEEESCCCCGG-GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH--HHH-HHGG
T ss_pred             ceEeEEeCcCCCccHH-HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH--HHH-HHHh
Confidence            4699999999998765 33557899999999999995 664322345554    379999999985 752  223 3577


Q ss_pred             CCCCCCEEeccccc
Q 037769          178 NLTKLSLLYLGATN  191 (200)
Q Consensus       178 ~l~~L~~L~Ls~N~  191 (200)
                      ++++|++|+++++.
T Consensus       137 ~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          137 HFRNLKYLFLSDLP  150 (176)
T ss_dssp             GCTTCCEEEEESCT
T ss_pred             cCCCCCEEECCCCC
Confidence            89999999999985

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.38  E-value=9.2e-05  Score=61.54  Aligned_cols=108  Identities=15%  Similarity=0.088  Sum_probs=64.0

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhcc--CCCCCCEEeccC--CcCCCC-----Cc
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFG--RLKELTYLNLSA--SNFGGL-----VP  146 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~--~l~~L~~L~Ls~--n~l~~~-----~P  146 (200)
                      ++++.|+|  +++.-. .+++   + .+++|+.|++..+.+... ....+.  .+++|+.|+|+.  |...+.     +.
T Consensus       172 P~L~~L~L--~g~~~l-~l~~---~-~~~~L~~L~L~~~~l~~~-~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~  243 (362)
T 2ra8_A          172 PLLNNLKI--KGTNNL-SIGK---K-PRPNLKSLEIISGGLPDS-VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR  243 (362)
T ss_dssp             TTCCEEEE--ECCBTC-BCCS---C-BCTTCSEEEEECSBCCHH-HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred             CCCcEEEE--eCCCCc-eecc---c-cCCCCcEEEEecCCCChH-HHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence            56777777  665211 2222   2 267788888877766532 222233  678888888753  221111     11


Q ss_pred             ccc--cCCCCCCEEeccCCcCCCCCCchhhhh---cCCCCCCEEecccccCCc
Q 037769          147 YEM--SHSSKLTHLDLSFCVLTIEHRTFDLLA---SNLTKLSLLYLGATNMSL  194 (200)
Q Consensus       147 ~~l--~~l~~L~~L~Ls~N~l~~~~~~lp~~l---~~l~~L~~L~Ls~N~l~g  194 (200)
                      ..+  ..+++|++|+|.+|.++   ...+..+   ..+++|++|+|+.|.+.+
T Consensus       244 ~~l~~~~~p~Lr~L~L~~~~i~---~~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          244 PLFSKDRFPNLKWLGIVDAEEQ---NVVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             GGSCTTTCTTCCEEEEESCTTH---HHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             HHHhcCCCCCcCEEeCCCCCCc---hHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence            122  24788999999888884   2222222   357889999999988865

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.23  E-value=0.00084  Score=56.39  Aligned_cols=87  Identities=13%  Similarity=0.040  Sum_probs=57.0

Q ss_pred             cccCCCCCcEEEccCCCCC-----CCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCch-
Q 037769           99 TLFHLSHLQSLNLAYSNFL-----GSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTF-  172 (200)
Q Consensus        99 ~l~~l~~L~~L~L~~n~l~-----~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~l-  172 (200)
                      .|.++++|+.+++.++.+.     .. -+..|..+++|+.++|.. .+...-...|.++.+|+.+.|..| ++    .+ 
T Consensus       266 aF~~c~~L~~l~l~~~~~~~~~~~~I-~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~----~I~  338 (401)
T 4fdw_A          266 AFYYCPELAEVTTYGSTFNDDPEAMI-HPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT----QIN  338 (401)
T ss_dssp             TTTTCTTCCEEEEESSCCCCCTTCEE-CTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC----EEC
T ss_pred             HhhCCCCCCEEEeCCccccCCcccEE-CHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc----EEc
Confidence            5667777777777776654     11 234567777788887773 355233346777788888888554 42    22 


Q ss_pred             hhhhcCCCCCCEEecccccCC
Q 037769          173 DLLASNLTKLSLLYLGATNMS  193 (200)
Q Consensus       173 p~~l~~l~~L~~L~Ls~N~l~  193 (200)
                      ...|.++ +|+.+++.+|.+.
T Consensus       339 ~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          339 FSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             TTSSSSS-CCCEEEECCSSCC
T ss_pred             HHhCCCC-CCCEEEEcCCCCc
Confidence            3457777 8888888888655

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.16  E-value=0.00092  Score=47.25  Aligned_cols=56  Identities=16%  Similarity=0.106  Sum_probs=30.1

Q ss_pred             EEEcccCCCCCe-eccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCC
Q 037769           80 GLDLYSSCSWLV-GTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFG  142 (200)
Q Consensus        80 ~L~L~~~~n~l~-~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~  142 (200)
                      .++.  ++++++ ..+|.  .+  -++|+.|+|++|.|+.. -+..|..+++|+.|+|.+|.+.
T Consensus        12 ~v~C--s~~~L~~~~vP~--~l--p~~l~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDC--GRRGLTWASLPT--AF--PVDTTELVLTGNNLTAL-PPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEEC--CSSCCCTTTSCS--CC--CTTCSEEECTTSCCSSC-CTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEe--CCCCCccccCCC--CC--CcCCCEEECCCCcCCcc-ChhhhhhccccCEEEecCCCee
Confidence            4455  555554 23343  21  23466666666666653 3344555666666666666553

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.89  E-value=0.002  Score=54.08  Aligned_cols=107  Identities=9%  Similarity=0.081  Sum_probs=76.6

Q ss_pred             CcEEEEEcccCCCCCe----eccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccC
Q 037769           76 GNVIGLDLYSSCSWLV----GTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSH  151 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~----~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~  151 (200)
                      .+++.+++  .++.+.    ..++.. .|.++++|+.+++.. .++.. -...|.++++|+.+.|..+ ++..-...|.+
T Consensus       271 ~~L~~l~l--~~~~~~~~~~~~I~~~-aF~~c~~L~~l~l~~-~i~~I-~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~  344 (401)
T 4fdw_A          271 PELAEVTT--YGSTFNDDPEAMIHPY-CLEGCPKLARFEIPE-SIRIL-GQGLLGGNRKVTQLTIPAN-VTQINFSAFNN  344 (401)
T ss_dssp             TTCCEEEE--ESSCCCCCTTCEECTT-TTTTCTTCCEECCCT-TCCEE-CTTTTTTCCSCCEEEECTT-CCEECTTSSSS
T ss_pred             CCCCEEEe--CCccccCCcccEECHH-HhhCCccCCeEEeCC-ceEEE-hhhhhcCCCCccEEEECcc-ccEEcHHhCCC
Confidence            46777887  666543    123332 788999999999984 46654 4567889999999999765 55344457888


Q ss_pred             CCCCCEEeccCCcCCCCCCchhhhhcCCC-CCCEEecccccC
Q 037769          152 SSKLTHLDLSFCVLTIEHRTFDLLASNLT-KLSLLYLGATNM  192 (200)
Q Consensus       152 l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~-~L~~L~Ls~N~l  192 (200)
                      + +|+.+++.+|.+.   ...+..|..++ +++.|++..+.+
T Consensus       345 ~-~L~~l~l~~n~~~---~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          345 T-GIKEVKVEGTTPP---QVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             S-CCCEEEECCSSCC---BCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             C-CCCEEEEcCCCCc---ccccccccCCCCCccEEEeCHHHH
Confidence            8 9999999999873   22234566664 788998887653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.88  E-value=0.0023  Score=45.14  Aligned_cols=55  Identities=18%  Similarity=0.165  Sum_probs=43.7

Q ss_pred             cEEEccCCCCC--CCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcC
Q 037769          107 QSLNLAYSNFL--GSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVL  165 (200)
Q Consensus       107 ~~L~L~~n~l~--~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l  165 (200)
                      ..++.+++.++  .  +|..+  ..+|+.|+|++|.|+..-+..|..+++|+.|+|++|.+
T Consensus        11 ~~v~Cs~~~L~~~~--vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           11 TLVDCGRRGLTWAS--LPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TEEECCSSCCCTTT--SCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CEEEeCCCCCcccc--CCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            47888888887  4  67543  35699999999999954445678899999999999988

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.84  E-value=0.00073  Score=51.37  Aligned_cols=113  Identities=11%  Similarity=0.085  Sum_probs=77.9

Q ss_pred             CcEEEEEcccCCC-CCee----ccCCCccccCCCCCcEEEccCCCCCCC---CCChhccCCCCCCEEeccCCcCCCC---
Q 037769           76 GNVIGLDLYSSCS-WLVG----TIDDNSTLFHLSHLQSLNLAYSNFLGS---QLSPEFGRLKELTYLNLSASNFGGL---  144 (200)
Q Consensus        76 ~~l~~L~L~~~~n-~l~~----~~p~~~~l~~l~~L~~L~L~~n~l~~~---~~p~~l~~l~~L~~L~Ls~n~l~~~---  144 (200)
                      ..++.|+|  +++ .+..    .+..  .+..-+.|+.|+|++|.+...   .+-..+..=+.|+.|+|+.|.|...   
T Consensus        41 ~~L~~L~L--~~nn~igd~ga~~la~--aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           41 TDLKEVNI--NNMKRVSKERIRSLIE--AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             SSCCEEEC--TTCCSSCHHHHHHHHH--HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             CCccEEEC--CCCCCCCHHHHHHHHH--HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            57999999  885 6652    2334  566678899999999998732   0223344557899999999999743   


Q ss_pred             -CcccccCCCCCCEEeccCC---cCCCC-CCchhhhhcCCCCCCEEecccccC
Q 037769          145 -VPYEMSHSSKLTHLDLSFC---VLTIE-HRTFDLLASNLTKLSLLYLGATNM  192 (200)
Q Consensus       145 -~P~~l~~l~~L~~L~Ls~N---~l~~~-~~~lp~~l~~l~~L~~L~Ls~N~l  192 (200)
                       +-..+..-+.|+.|+|++|   .+... ...+...+..-+.|+.|+++.|.+
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence             3334556678999999865   44210 012455677778999999987754

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.66  E-value=0.00064  Score=51.71  Aligned_cols=92  Identities=12%  Similarity=0.018  Sum_probs=65.7

Q ss_pred             cccCCCCCcEEEccCC-CCCCCC---CChhccCCCCCCEEeccCCcCCCC----CcccccCCCCCCEEeccCCcCCCC-C
Q 037769           99 TLFHLSHLQSLNLAYS-NFLGSQ---LSPEFGRLKELTYLNLSASNFGGL----VPYEMSHSSKLTHLDLSFCVLTIE-H  169 (200)
Q Consensus        99 ~l~~l~~L~~L~L~~n-~l~~~~---~p~~l~~l~~L~~L~Ls~n~l~~~----~P~~l~~l~~L~~L~Ls~N~l~~~-~  169 (200)
                      .+.+-+.|+.|+|++| .+....   +-..+..-+.|+.|+|++|.+...    +...+..-+.|++|+|+.|.++.. .
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL  115 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence            3455688999999986 764210   234466678999999999999742    333455568899999999999521 1


Q ss_pred             CchhhhhcCCCCCCEEecccc
Q 037769          170 RTFDLLASNLTKLSLLYLGAT  190 (200)
Q Consensus       170 ~~lp~~l~~l~~L~~L~Ls~N  190 (200)
                      ..+-..+..-+.|++|+|++|
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHhhCCceeEEECCCC
Confidence            124456777788999999865

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.83  E-value=0.028  Score=46.46  Aligned_cols=85  Identities=12%  Similarity=0.188  Sum_probs=54.4

Q ss_pred             cccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCch-hhhhc
Q 037769           99 TLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTF-DLLAS  177 (200)
Q Consensus        99 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~l-p~~l~  177 (200)
                      .+.+++.|+.+.+.. .++.. -...|.++.+|+.++|..+ ++..-...|.++.+|+.+.+..+ ++    .+ ...|.
T Consensus       283 aF~~c~~L~~i~l~~-~i~~I-~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~----~I~~~aF~  354 (394)
T 4gt6_A          283 AFMNCPALQDIEFSS-RITEL-PESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT----KIPESAFS  354 (394)
T ss_dssp             TTTTCTTCCEEECCT-TCCEE-CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC----BCCGGGGT
T ss_pred             ccccccccccccCCC-ccccc-CceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC----EEhHhHhh
Confidence            566778888888753 34332 2345677788888888754 44222346777888888887654 42    22 34577


Q ss_pred             CCCCCCEEeccccc
Q 037769          178 NLTKLSLLYLGATN  191 (200)
Q Consensus       178 ~l~~L~~L~Ls~N~  191 (200)
                      ++++|+.+++.++.
T Consensus       355 ~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          355 NCTALNNIEYSGSR  368 (394)
T ss_dssp             TCTTCCEEEESSCH
T ss_pred             CCCCCCEEEECCce
Confidence            78888888877654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.74  E-value=0.056  Score=44.67  Aligned_cols=85  Identities=14%  Similarity=0.123  Sum_probs=48.2

Q ss_pred             cccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcC
Q 037769           99 TLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASN  178 (200)
Q Consensus        99 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~  178 (200)
                      .|.++.+|+.+.+..+ ++.. -...|.++++|+.+.+..+ ++..-...|.++.+|+.+++.++...      -..+..
T Consensus       306 aF~~c~~L~~i~lp~~-v~~I-~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~------~~~~~~  376 (394)
T 4gt6_A          306 VFAGCISLKSIDIPEG-ITQI-LDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ------WNAIST  376 (394)
T ss_dssp             TTTTCTTCCEEECCTT-CCEE-CTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH------HHTCBC
T ss_pred             eecCCCCcCEEEeCCc-ccEe-hHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee------hhhhhc
Confidence            5667778888887654 4432 2456777888888888654 44222346778888888888776541      134566


Q ss_pred             CCCCCEEecccccC
Q 037769          179 LTKLSLLYLGATNM  192 (200)
Q Consensus       179 l~~L~~L~Ls~N~l  192 (200)
                      ...|+.+.+..|.+
T Consensus       377 ~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          377 DSGLQNLPVAPGSI  390 (394)
T ss_dssp             CCCC----------
T ss_pred             cCCCCEEEeCCCCE
Confidence            67777777766654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.18  E-value=0.053  Score=44.40  Aligned_cols=85  Identities=20%  Similarity=0.146  Sum_probs=52.4

Q ss_pred             cccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchh-hhhc
Q 037769           99 TLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFD-LLAS  177 (200)
Q Consensus        99 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp-~~l~  177 (200)
                      .+.++..|+.+.+..+ +... -...+..+++|+.+.+..+.++..-...|.++.+|+.+.|..+ ++    .+. ..|.
T Consensus       258 aF~~~~~l~~i~l~~~-i~~i-~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~----~I~~~aF~  330 (379)
T 4h09_A          258 LLQNCTALKTLNFYAK-VKTV-PYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK----TIQVYAFK  330 (379)
T ss_dssp             TTTTCTTCCEEEECCC-CSEE-CTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC----EECTTTTT
T ss_pred             ccceeehhcccccccc-ceec-cccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc----EEHHHHhh
Confidence            4455666666666443 3321 2335667788888888877776333346778888888888654 32    232 3577


Q ss_pred             CCCCCCEEecccc
Q 037769          178 NLTKLSLLYLGAT  190 (200)
Q Consensus       178 ~l~~L~~L~Ls~N  190 (200)
                      ++++|+.+.+..+
T Consensus       331 ~C~~L~~i~ip~~  343 (379)
T 4h09_A          331 NCKALSTISYPKS  343 (379)
T ss_dssp             TCTTCCCCCCCTT
T ss_pred             CCCCCCEEEECCc
Confidence            7777777776543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.04  E-value=0.039  Score=45.63  Aligned_cols=84  Identities=14%  Similarity=0.121  Sum_probs=60.5

Q ss_pred             cccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCch-hhhhc
Q 037769           99 TLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTF-DLLAS  177 (200)
Q Consensus        99 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~l-p~~l~  177 (200)
                      .+..+..|+.+.+..+ ++.. -...|..+++|+.++|..+ ++..-...|.++.+|+.+++..+ ++    .+ ...|.
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I-~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~----~I~~~aF~  363 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFI-GEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR----KIGANAFQ  363 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEE-CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC----EECTTTBT
T ss_pred             cccccccccccccccc-ccee-chhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc----EehHHHhh
Confidence            5677888999888764 4432 3456788899999999754 55223357888999999998766 42    23 34688


Q ss_pred             CCCCCCEEecccc
Q 037769          178 NLTKLSLLYLGAT  190 (200)
Q Consensus       178 ~l~~L~~L~Ls~N  190 (200)
                      ++.+|+.+++..+
T Consensus       364 ~C~~L~~i~lp~~  376 (394)
T 4fs7_A          364 GCINLKKVELPKR  376 (394)
T ss_dssp             TCTTCCEEEEEGG
T ss_pred             CCCCCCEEEECCC
Confidence            8999999988765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=94.90  E-value=0.048  Score=45.06  Aligned_cols=82  Identities=16%  Similarity=0.123  Sum_probs=45.1

Q ss_pred             cccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCch-hhhhc
Q 037769           99 TLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTF-DLLAS  177 (200)
Q Consensus        99 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~l-p~~l~  177 (200)
                      .+..+..++.+.+..+.+.    ...+..+.+|+.+.+..+ +...-...|.++.+|+.+++..+ ++    .+ ...|.
T Consensus       271 ~F~~~~~l~~~~~~~~~i~----~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~----~I~~~aF~  340 (394)
T 4fs7_A          271 LFYNCSGLKKVIYGSVIVP----EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE----EIGKRSFR  340 (394)
T ss_dssp             TTTTCTTCCEEEECSSEEC----TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC----EECTTTTT
T ss_pred             ccccccccceeccCceeec----cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc----EEhHHhcc
Confidence            3555666666665554332    224556667777766544 33222235666677777776543 31    22 23466


Q ss_pred             CCCCCCEEecccc
Q 037769          178 NLTKLSLLYLGAT  190 (200)
Q Consensus       178 ~l~~L~~L~Ls~N  190 (200)
                      ++++|+.+++..|
T Consensus       341 ~c~~L~~i~lp~~  353 (394)
T 4fs7_A          341 GCTSLSNINFPLS  353 (394)
T ss_dssp             TCTTCCEECCCTT
T ss_pred             CCCCCCEEEECcc
Confidence            6777777766554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=92.25  E-value=0.44  Score=38.76  Aligned_cols=85  Identities=18%  Similarity=0.137  Sum_probs=57.0

Q ss_pred             cccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCch-hhhhc
Q 037769           99 TLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTF-DLLAS  177 (200)
Q Consensus        99 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~l-p~~l~  177 (200)
                      .+.++..|+.+.+..+ ++.. -...+..+.+|+.+.+..+ +...-...|.++.+|+.+.+..+.++    .+ ...|.
T Consensus       235 ~f~~~~~L~~i~lp~~-v~~I-~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~----~I~~~aF~  307 (379)
T 4h09_A          235 AFYGMKALDEIAIPKN-VTSI-GSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE----TLEPRVFM  307 (379)
T ss_dssp             TTTTCSSCCEEEECTT-CCEE-CTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC----EECTTTTT
T ss_pred             cccCCccceEEEcCCC-ccEe-Cccccceeehhcccccccc-ceeccccccccccccccccccccccc----eehhhhhc
Confidence            3555667777776554 3322 2345667788888888654 43222346788899999999888773    33 34688


Q ss_pred             CCCCCCEEecccc
Q 037769          178 NLTKLSLLYLGAT  190 (200)
Q Consensus       178 ~l~~L~~L~Ls~N  190 (200)
                      ++.+|+.+.|..+
T Consensus       308 ~c~~L~~i~lp~~  320 (379)
T 4h09_A          308 DCVKLSSVTLPTA  320 (379)
T ss_dssp             TCTTCCEEECCTT
T ss_pred             CCCCCCEEEcCcc
Confidence            8999999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	200
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-10
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.001

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 56.7 bits (135), Expect = 2e-10
 Identities = 45/148 (30%), Positives = 63/148 (42%), Gaps = 19/148 (12%)

Query: 20  CPPEQSLALLQFKNNTYVRSANYSFCNEENSSPKTNSWTEGTDCC--SWDGVTCDN--VT 75
           C P+   ALLQ K +               +    +SW   TDCC  +W GV CD    T
Sbjct: 3   CNPQDKQALLQIKKDL-------------GNPTTLSSWLPTTDCCNRTWLGVLCDTDTQT 49

Query: 76  GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLN 135
             V  LDL  S   L       S+L +L +L  L +   N L   + P   +L +L YL 
Sbjct: 50  YRVNNLDL--SGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 136 LSASNFGGLVPYEMSHSSKLTHLDLSFC 163
           ++ +N  G +P  +S    L  LD S+ 
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYN 135

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 8e-04
 Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 6/93 (6%)

Query: 106 LQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGG----LVPYEMSHSSKLTHLDLS 161
           +QSL++       ++ +     L++   + L            +   +  +  L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 162 FCVLTIE--HRTFDLLASNLTKLSLLYLGATNM 192
              L     H     L +   K+  L L    +
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 23/134 (17%), Positives = 47/134 (35%), Gaps = 11/134 (8%)

Query: 28  LLQFKNNTYVRSANYSFCNEENSSPKTNSWTEGTDCCSWDGVTCDNVTGNVIGLDLYSSC 87
           L      T ++       N    +  T       +    + ++  +   N+  L LY + 
Sbjct: 259 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN 318

Query: 88  SWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPY 147
                 I D S +  L+ LQ L  A +             L  + +L+   +    L P 
Sbjct: 319 ------ISDISPVSSLTKLQRLFFANNKVSDV---SSLANLTNINWLSAGHNQISDLTP- 368

Query: 148 EMSHSSKLTHLDLS 161
            +++ +++T L L+
Sbjct: 369 -LANLTRITQLGLN 381

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	200
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.96
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.7
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.62
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.51
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.47
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.46
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.43
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.43
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.37
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.36
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.36
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.33
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.3
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.25
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.21
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.2
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.18
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.11
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.09
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.07
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.06
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.05
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.03
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.94
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.87
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.84
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.8
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.76
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.73
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.5
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.3
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.25
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.21
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.2
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.14
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.09
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.88
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.86
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.61
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.39
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.49
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.73

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.96  E-value=2.9e-29  Score=203.54  Aligned_cols=159  Identities=33%  Similarity=0.504  Sum_probs=144.5

Q ss_pred             CCHHHHHHHHHHHHhcCCCCCCcccCcCCCCCCCCCCCCCCCCCc--cccceEecCCC--CcEEEEEcccCCCCCee--c
Q 037769           20 CPPEQSLALLQFKNNTYVRSANYSFCNEENSSPKTNSWTEGTDCC--SWDGVTCDNVT--GNVIGLDLYSSCSWLVG--T   93 (200)
Q Consensus        20 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~c--~w~gv~c~~~~--~~l~~L~L~~~~n~l~~--~   93 (200)
                      |.++|++||++||+.+.++             ..+.+|..++|||  .|.||+|+...  .||+.|+|  +++++.|  .
T Consensus         3 c~~~e~~aLl~~k~~~~~~-------------~~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L--~~~~l~g~~~   67 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLGNP-------------TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDL--SGLNLPKPYP   67 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCC-------------GGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEE--ECCCCSSCEE
T ss_pred             CCHHHHHHHHHHHHHCCCC-------------CcCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEEC--CCCCCCCCCC
Confidence            8999999999999999876             3578898888999  59999998643  48999999  9999987  5


Q ss_pred             cCCCccccCCCCCcEEEccC-CCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCch
Q 037769           94 IDDNSTLFHLSHLQSLNLAY-SNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTF  172 (200)
Q Consensus        94 ~p~~~~l~~l~~L~~L~L~~-n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~l  172 (200)
                      +|+  .++++++|++|+|++ |.++|. +|+.++++++|++|+|++|++.+..|..+..+..|+.++++.|.+   ...+
T Consensus        68 lp~--~l~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~---~~~~  141 (313)
T d1ogqa_          68 IPS--SLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL---SGTL  141 (313)
T ss_dssp             CCG--GGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE---ESCC
T ss_pred             CCh--HHhcCccccccccccccccccc-cccccccccccchhhhccccccccccccccchhhhcccccccccc---cccC
Confidence            788  899999999999996 899988 999999999999999999999988888899999999999999999   4678


Q ss_pred             hhhhcCCCCCCEEecccccCCcCCCCC
Q 037769          173 DLLASNLTKLSLLYLGATNMSLIKPFS  199 (200)
Q Consensus       173 p~~l~~l~~L~~L~Ls~N~l~g~iP~~  199 (200)
                      |..+++++.|+.+++++|.+.|.+|..
T Consensus       142 p~~l~~l~~L~~l~l~~n~l~~~ip~~  168 (313)
T d1ogqa_         142 PPSISSLPNLVGITFDGNRISGAIPDS  168 (313)
T ss_dssp             CGGGGGCTTCCEEECCSSCCEEECCGG
T ss_pred             chhhccCcccceeeccccccccccccc
Confidence            899999999999999999999999864

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=4.1e-17  Score=122.88  Aligned_cols=125  Identities=18%  Similarity=0.159  Sum_probs=106.8

Q ss_pred             ccccceEecCC---------CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEE
Q 037769           64 CSWDGVTCDNV---------TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYL  134 (200)
Q Consensus        64 c~w~gv~c~~~---------~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L  134 (200)
                      |.|..|.|.+.         +..+++|+|  ++|.|++.++.. .|.++++|++|++++|.+... .+..+..+++|++|
T Consensus         8 C~~~~v~Cs~~~L~~iP~~lp~~l~~L~L--s~N~i~~~~~~~-~f~~l~~L~~L~L~~N~i~~~-~~~~~~~~~~L~~L   83 (192)
T d1w8aa_           8 CEGTTVDCTGRGLKEIPRDIPLHTTELLL--NDNELGRISSDG-LFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQEL   83 (192)
T ss_dssp             EETTEEECTTSCCSSCCSCCCTTCSEEEC--CSCCCCSBCCSC-SGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEE
T ss_pred             EcCCEEEEeCCCcCccCCCCCCCCCEEEe--CCCCCccccccc-ccCCCceEeeeeccccccccc-ccccccccccccee
Confidence            67888888642         357899999  999998655442 678999999999999999987 78889999999999


Q ss_pred             eccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcC
Q 037769          135 NLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLI  195 (200)
Q Consensus       135 ~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~  195 (200)
                      +|++|+++...|..|.++++|++|+|++|+++   ...|..|..+++|++|+|++|++...
T Consensus        84 ~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~---~i~~~~f~~l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_          84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQIS---CVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             ECCSCCCCEECSSSSTTCTTCCEEECCSSCCC---EECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             eeccccccccCHHHHhCCCcccccccCCcccc---ccCHHHhcCCcccccccccccccccc
Confidence            99999999766778999999999999999995   23355689999999999999998753

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=2.1e-15  Score=105.95  Aligned_cols=104  Identities=21%  Similarity=0.183  Sum_probs=89.3

Q ss_pred             EEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEE
Q 037769           79 IGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHL  158 (200)
Q Consensus        79 ~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L  158 (200)
                      +.|++  ++|.++ .++.   +..+++|++|++++|.++.  +|+.+..+++|+.|++++|.++ .+| .+..+++|++|
T Consensus         1 R~L~L--s~n~l~-~l~~---l~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L   70 (124)
T d1dcea3           1 RVLHL--AHKDLT-VLCH---LEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQEL   70 (124)
T ss_dssp             SEEEC--TTSCCS-SCCC---GGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEE
T ss_pred             CEEEc--CCCCCC-CCcc---cccCCCCCEEECCCCccCc--chhhhhhhhccccccccccccc-ccC-ccccccccCeE
Confidence            36899  999998 5554   8899999999999999986  7888999999999999999999 455 48999999999


Q ss_pred             eccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769          159 DLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL  194 (200)
Q Consensus       159 ~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g  194 (200)
                      ++++|+++..  .-...++.+++|++|++++|++++
T Consensus        71 ~l~~N~i~~~--~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          71 LLCNNRLQQS--AAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             ECCSSCCCSS--STTGGGGGCTTCCEEECTTSGGGG
T ss_pred             ECCCCccCCC--CCchhhcCCCCCCEEECCCCcCCc
Confidence            9999999531  122468899999999999999974

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.51  E-value=3.9e-14  Score=106.25  Aligned_cols=109  Identities=22%  Similarity=0.234  Sum_probs=92.2

Q ss_pred             EEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEe
Q 037769           80 GLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLD  159 (200)
Q Consensus        80 ~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~  159 (200)
                      +++.  ++++++ .+|.  .+  .+++++|+|++|.|+....+..|..+++|+.|+|++|.+....+..+..+++|++|+
T Consensus        12 ~v~C--s~~~L~-~iP~--~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~   84 (192)
T d1w8aa_          12 TVDC--TGRGLK-EIPR--DI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             EEEC--TTSCCS-SCCS--CC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             EEEE--eCCCcC-ccCC--CC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceee
Confidence            6889  999998 7777  55  378999999999998641456678999999999999999988888999999999999


Q ss_pred             ccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCC
Q 037769          160 LSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPF  198 (200)
Q Consensus       160 Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~  198 (200)
                      |++|+++   ...|..|.++++|++|+|++|+|++..|.
T Consensus        85 Ls~N~l~---~l~~~~F~~l~~L~~L~L~~N~l~~i~~~  120 (192)
T d1w8aa_          85 LGENKIK---EISNKMFLGLHQLKTLNLYDNQISCVMPG  120 (192)
T ss_dssp             CCSCCCC---EECSSSSTTCTTCCEEECCSSCCCEECTT
T ss_pred             ecccccc---ccCHHHHhCCCcccccccCCccccccCHH
Confidence            9999994   22345689999999999999999964443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=7.5e-14  Score=102.25  Aligned_cols=107  Identities=17%  Similarity=0.115  Sum_probs=88.2

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .++++|+|  ++|.|+ .++.  .+..+++|+.|++++|.++.  ++ .+..+++|++|++++|.++...+..+..+++|
T Consensus        18 ~~lr~L~L--~~n~I~-~i~~--~~~~l~~L~~L~Ls~N~i~~--l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          18 VRDRELDL--RGYKIP-VIEN--LGATLDQFDAIDFSDNEIRK--LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             TSCEEEEC--TTSCCC-SCCC--GGGGTTCCSEEECCSSCCCE--EC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             CcCcEEEC--CCCCCC-ccCc--cccccccCCEEECCCCCCCc--cC-CcccCcchhhhhcccccccCCCcccccccccc
Confidence            47899999  999998 5566  56789999999999999985  54 48889999999999999985434445678999


Q ss_pred             CEEeccCCcCCCCCCchh--hhhcCCCCCCEEecccccCCc
Q 037769          156 THLDLSFCVLTIEHRTFD--LLASNLTKLSLLYLGATNMSL  194 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp--~~l~~l~~L~~L~Ls~N~l~g  194 (200)
                      ++|++++|+++    .++  ..+..+++|++|++++|+++.
T Consensus        90 ~~L~L~~N~i~----~~~~l~~l~~l~~L~~L~l~~N~i~~  126 (162)
T d1a9na_          90 TELILTNNSLV----ELGDLDPLASLKSLTYLCILRNPVTN  126 (162)
T ss_dssp             CEEECCSCCCC----CGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred             ccceecccccc----ccccccccccccccchhhcCCCcccc
Confidence            99999999994    333  357889999999999998864

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.46  E-value=9.4e-15  Score=117.10  Aligned_cols=116  Identities=18%  Similarity=0.238  Sum_probs=105.6

Q ss_pred             CcEEEEEcccCC-CCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCC
Q 037769           76 GNVIGLDLYSSC-SWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSK  154 (200)
Q Consensus        76 ~~l~~L~L~~~~-n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~  154 (200)
                      .++++|+|  ++ |.+.|.+|+  .+.++++|++|+|++|.+.+. .+..+..+.+|+.+++++|.+.+.+|..+..++.
T Consensus        76 ~~L~~L~L--s~~N~l~g~iP~--~i~~L~~L~~L~Ls~N~l~~~-~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~  150 (313)
T d1ogqa_          76 PYLNFLYI--GGINNLVGPIPP--AIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN  150 (313)
T ss_dssp             TTCSEEEE--EEETTEESCCCG--GGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred             cccccccc--cccccccccccc--ccccccccchhhhcccccccc-ccccccchhhhcccccccccccccCchhhccCcc
Confidence            57899999  87 889999999  899999999999999999987 7888999999999999999999999999999999


Q ss_pred             CCEEeccCCcCCCCCCchhhhhcCCCCC-CEEecccccCCcCCCCC
Q 037769          155 LTHLDLSFCVLTIEHRTFDLLASNLTKL-SLLYLGATNMSLIKPFS  199 (200)
Q Consensus       155 L~~L~Ls~N~l~~~~~~lp~~l~~l~~L-~~L~Ls~N~l~g~iP~~  199 (200)
                      |+++++++|.++   +.+|..+..+..+ +.++++.|+++|.+|..
T Consensus       151 L~~l~l~~n~l~---~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~  193 (313)
T d1ogqa_         151 LVGITFDGNRIS---GAIPDSYGSFSKLFTSMTISRNRLTGKIPPT  193 (313)
T ss_dssp             CCEEECCSSCCE---EECCGGGGCCCTTCCEEECCSSEEEEECCGG
T ss_pred             cceeeccccccc---ccccccccccccccccccccccccccccccc
Confidence            999999999994   5788888888876 88999999999887753

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.2e-12  Score=102.68  Aligned_cols=114  Identities=24%  Similarity=0.197  Sum_probs=69.6

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .+++.|++  ++|.+.+ .+.  .+..++.|++|++++|.+... .+..+..+.+++.|++++|.+....+..+..+++|
T Consensus        77 ~~L~~L~L--s~N~l~~-~~~--~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l  150 (266)
T d1p9ag_          77 PVLGTLDL--SHNQLQS-LPL--LGQTLPALTVLDVSFNRLTSL-PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL  150 (266)
T ss_dssp             TTCCEEEC--CSSCCSS-CCC--CTTTCTTCCEEECCSSCCCCC-CSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             cccccccc--ccccccc-ccc--cccccccccccccccccccee-eccccccccccccccccccccceeccccccccccc
Confidence            45666666  6666653 233  455666666666666666554 34444555666666666666664444445566677


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCCC
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPFS  199 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~~  199 (200)
                      +.+++++|+++   ...+..+..+++|++|+|++|+|+ .||++
T Consensus       151 ~~l~l~~N~l~---~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~  190 (266)
T d1p9ag_         151 EKLSLANNNLT---ELPAGLLNGLENLDTLLLQENSLY-TIPKG  190 (266)
T ss_dssp             CEEECTTSCCS---CCCTTTTTTCTTCCEEECCSSCCC-CCCTT
T ss_pred             hhccccccccc---ccCccccccccccceeecccCCCc-ccChh
Confidence            77777777773   233445677777777777777777 57654

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.4e-13  Score=107.43  Aligned_cols=111  Identities=22%  Similarity=0.125  Sum_probs=76.1

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      ..++.+++  ++|.+++..+.  .+..+++|+.|++++|.+++. .+..+..+++|+.+++++|++++..|..|..+++|
T Consensus       129 ~~L~~l~l--~~N~l~~i~~~--~f~~~~~L~~L~l~~N~l~~l-~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L  203 (284)
T d1ozna_         129 AALQYLYL--QDNALQALPDD--TFRDLGNLTHLFLHGNRISSV-PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL  203 (284)
T ss_dssp             TTCCEEEC--CSSCCCCCCTT--TTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             cccchhhh--ccccccccChh--HhccccchhhcccccCccccc-chhhhccccccchhhhhhccccccChhHhhhhhhc
Confidence            34666667  67776644444  566677777777777777664 45566677777777777777776667777777777


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL  194 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g  194 (200)
                      ++|++++|+++   ...+..++.+++|++|++++|++.+
T Consensus       204 ~~L~l~~N~i~---~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         204 MTLYLFANNLS---ALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             CEEECCSSCCS---CCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             ccccccccccc---cccccccccccccCEEEecCCCCCC
Confidence            77777777773   3445567777777777777777654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.9e-12  Score=101.41  Aligned_cols=109  Identities=20%  Similarity=0.072  Sum_probs=97.0

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .+++.|++  +++.+....+.  .+..+.++++|++++|.+... .+..+..++.|+.+++++|++++..+..+..+++|
T Consensus       100 ~~L~~L~l--~~~~~~~~~~~--~~~~l~~l~~L~l~~n~l~~l-~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L  174 (266)
T d1p9ag_         100 PALTVLDV--SFNRLTSLPLG--ALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL  174 (266)
T ss_dssp             TTCCEEEC--CSSCCCCCCSS--TTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTC
T ss_pred             cccccccc--cccccceeecc--cccccccccccccccccccee-ccccccccccchhcccccccccccCcccccccccc
Confidence            57899999  99998866666  788899999999999999985 56667789999999999999997777789999999


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCC
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMS  193 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~  193 (200)
                      ++|+|++|+++    .+|..+..+++|+.|+|++|++.
T Consensus       175 ~~L~Ls~N~L~----~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         175 DTLLLQENSLY----TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CEEECCSSCCC----CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ceeecccCCCc----ccChhHCCCCCCCEEEecCCCCC
Confidence            99999999993    68888889999999999999875

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.3e-12  Score=103.11  Aligned_cols=114  Identities=23%  Similarity=0.171  Sum_probs=94.8

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .+++.|++  ++|.+....+.  .+..+..|+.+++++|.+++. .+..+..+++|+.|++++|.+++..+..+.++++|
T Consensus       105 ~~L~~L~l--~~n~~~~~~~~--~~~~~~~L~~l~l~~N~l~~i-~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L  179 (284)
T d1ozna_         105 GRLHTLHL--DRCGLQELGPG--LFRGLAALQYLYLQDNALQAL-PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL  179 (284)
T ss_dssp             TTCCEEEC--TTSCCCCCCTT--TTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             ccCCEEec--CCccccccccc--ccchhcccchhhhcccccccc-ChhHhccccchhhcccccCcccccchhhhcccccc
Confidence            47888999  88888755555  677888899999999999875 45678888999999999999987667788899999


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCC
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKP  197 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP  197 (200)
                      +.+++++|+++   ...|..|.++++|++|++++|.+.+..|
T Consensus       180 ~~l~l~~N~l~---~i~~~~f~~l~~L~~L~l~~N~i~~~~~  218 (284)
T d1ozna_         180 DRLLLHQNRVA---HVHPHAFRDLGRLMTLYLFANNLSALPT  218 (284)
T ss_dssp             CEEECCSSCCC---EECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred             chhhhhhcccc---ccChhHhhhhhhcccccccccccccccc
Confidence            99999999994   4457789999999999999999986443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.8e-12  Score=94.16  Aligned_cols=89  Identities=20%  Similarity=0.236  Sum_probs=44.3

Q ss_pred             cccCCCCCcEEEccCCC-CCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhc
Q 037769           99 TLFHLSHLQSLNLAYSN-FLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLAS  177 (200)
Q Consensus        99 ~l~~l~~L~~L~L~~n~-l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~  177 (200)
                      .+..+++|++|++.+|+ ++.. .+..|..+++|+.|++++|+++...|..|..+++|++|+|++|+++    .+|....
T Consensus        26 ~l~~l~~l~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~----~l~~~~~  100 (156)
T d2ifga3          26 HLPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE----SLSWKTV  100 (156)
T ss_dssp             TSCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS----CCCSTTT
T ss_pred             cccCccccCeeecCCCcccccc-CchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc----ccChhhh
Confidence            34455555555554443 4432 2334555555555555555555433444555555555555555552    2333322


Q ss_pred             CCCCCCEEecccccC
Q 037769          178 NLTKLSLLYLGATNM  192 (200)
Q Consensus       178 ~l~~L~~L~Ls~N~l  192 (200)
                      ....|+.|+|++|++
T Consensus       101 ~~~~l~~L~L~~Np~  115 (156)
T d2ifga3         101 QGLSLQELVLSGNPL  115 (156)
T ss_dssp             CSCCCCEEECCSSCC
T ss_pred             ccccccccccCCCcc
Confidence            223455555555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=3.3e-12  Score=89.28  Aligned_cols=102  Identities=23%  Similarity=0.174  Sum_probs=82.9

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCC-cccccCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLV-PYEMSHSSK  154 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-P~~l~~l~~  154 (200)
                      ..++.|++  ++|.++ .+|+  .+..+++|+.|++++|.++.  +| .+..+++|+.|++++|+++... ...+..+++
T Consensus        20 ~~L~~L~l--s~N~l~-~lp~--~~~~l~~L~~L~l~~N~i~~--l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~   91 (124)
T d1dcea3          20 LLVTHLDL--SHNRLR-ALPP--ALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPR   91 (124)
T ss_dssp             TTCCEEEC--CSSCCC-CCCG--GGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTT
T ss_pred             CCCCEEEC--CCCccC-cchh--hhhhhhcccccccccccccc--cC-ccccccccCeEECCCCccCCCCCchhhcCCCC
Confidence            57999999  999998 6777  79999999999999999986  55 5899999999999999998432 246888999


Q ss_pred             CCEEeccCCcCCCCCCchhhhhcCCCCCCEE
Q 037769          155 LTHLDLSFCVLTIEHRTFDLLASNLTKLSLL  185 (200)
Q Consensus       155 L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L  185 (200)
                      |++|++++|+++...+........+++|+.|
T Consensus        92 L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          92 LVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            9999999999964322223345557777765

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.30  E-value=4.8e-12  Score=100.53  Aligned_cols=117  Identities=13%  Similarity=0.055  Sum_probs=91.4

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .+++.|++  ++|...+..+.  .+.+++.+++|++++|.+.+. .+..+..+++|++|+|++|.++ .+|..+..+++|
T Consensus       171 ~~L~~L~l--~~n~~~~~~~~--~~~~~~~l~~L~~s~n~l~~~-~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L  244 (305)
T d1xkua_         171 PSLTELHL--DGNKITKVDAA--SLKGLNNLAKLGLSFNSISAV-DNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI  244 (305)
T ss_dssp             TTCSEEEC--TTSCCCEECTG--GGTTCTTCCEEECCSSCCCEE-CTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSC
T ss_pred             CccCEEEC--CCCcCCCCChh--Hhhcccccccccccccccccc-ccccccccccceeeeccccccc-ccccccccccCC
Confidence            56788888  88888877777  788889999999999999876 6777888999999999999988 678888889999


Q ss_pred             CEEeccCCcCCCCCCc---hhhhhcCCCCCCEEecccccCC-cCCCC
Q 037769          156 THLDLSFCVLTIEHRT---FDLLASNLTKLSLLYLGATNMS-LIKPF  198 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~---lp~~l~~l~~L~~L~Ls~N~l~-g~iP~  198 (200)
                      ++|+|++|+++.....   .+.....+.+|+.|+|++|++. +.+|+
T Consensus       245 ~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~  291 (305)
T d1xkua_         245 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP  291 (305)
T ss_dssp             CEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG
T ss_pred             CEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCH
Confidence            9999999988532110   1223456778899999999875 45553

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.25  E-value=1.2e-11  Score=98.27  Aligned_cols=110  Identities=16%  Similarity=0.145  Sum_probs=94.0

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      ..++.+++  .+|.+. .++.  .  .+++|+.|++++|..... .+..+..++.++.|++++|.+.+..+..+.++++|
T Consensus       150 ~~L~~l~l--~~n~l~-~l~~--~--~~~~L~~L~l~~n~~~~~-~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L  221 (305)
T d1xkua_         150 KKLSYIRI--ADTNIT-TIPQ--G--LPPSLTELHLDGNKITKV-DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL  221 (305)
T ss_dssp             TTCCEEEC--CSSCCC-SCCS--S--CCTTCSEEECTTSCCCEE-CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC
T ss_pred             cccCcccc--ccCCcc-ccCc--c--cCCccCEEECCCCcCCCC-ChhHhhccccccccccccccccccccccccccccc
Confidence            35788888  888876 4554  2  367899999999999887 78889999999999999999997777888999999


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCCC
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKPF  198 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP~  198 (200)
                      ++|+|++|+++    .+|..+..+++|++|+|++|+|+ .|+.
T Consensus       222 ~~L~L~~N~L~----~lp~~l~~l~~L~~L~Ls~N~i~-~i~~  259 (305)
T d1xkua_         222 RELHLNNNKLV----KVPGGLADHKYIQVVYLHNNNIS-AIGS  259 (305)
T ss_dssp             CEEECCSSCCS----SCCTTTTTCSSCCEEECCSSCCC-CCCT
T ss_pred             eeeeccccccc----ccccccccccCCCEEECCCCccC-ccCh
Confidence            99999999994    67888999999999999999998 4553

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=3.2e-11  Score=87.37  Aligned_cols=85  Identities=22%  Similarity=0.138  Sum_probs=71.5

Q ss_pred             CcEEEEEcccCCCC-CeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCC
Q 037769           76 GNVIGLDLYSSCSW-LVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSK  154 (200)
Q Consensus        76 ~~l~~L~L~~~~n~-l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~  154 (200)
                      .++++|++  .+|+ ++..-+.  .|.++++|+.|+|++|.++.. .+..|..+++|++|+|++|+++ .+|.......+
T Consensus        31 ~~l~~L~l--~~n~~l~~i~~~--~f~~l~~L~~L~Ls~N~l~~i-~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~  104 (156)
T d2ifga3          31 ENLTELYI--ENQQHLQHLELR--DLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLS  104 (156)
T ss_dssp             SCCSEEEC--CSCSSCCEECGG--GSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCC
T ss_pred             cccCeeec--CCCccccccCch--hhccccccCcceeeccccCCc-ccccccccccccceeccCCCCc-ccChhhhcccc
Confidence            47899999  8775 7744445  789999999999999999985 5777999999999999999999 66665555568


Q ss_pred             CCEEeccCCcCC
Q 037769          155 LTHLDLSFCVLT  166 (200)
Q Consensus       155 L~~L~Ls~N~l~  166 (200)
                      |+.|+|++|.+.
T Consensus       105 l~~L~L~~Np~~  116 (156)
T d2ifga3         105 LQELVLSGNPLH  116 (156)
T ss_dssp             CCEEECCSSCCC
T ss_pred             ccccccCCCccc
Confidence            999999999983

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.1e-11  Score=90.52  Aligned_cols=104  Identities=15%  Similarity=0.061  Sum_probs=83.4

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCc--ccccCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVP--YEMSHSS  153 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P--~~l~~l~  153 (200)
                      .+++.|++  ++|.+. .++   .+..+++|++|++++|.++.. .+..+..+++|+.|++++|.+. .++  ..+..++
T Consensus        41 ~~L~~L~L--s~N~i~-~l~---~~~~l~~L~~L~ls~N~i~~l-~~~~~~~l~~L~~L~L~~N~i~-~~~~l~~l~~l~  112 (162)
T d1a9na_          41 DQFDAIDF--SDNEIR-KLD---GFPLLRRLKTLLVNNNRICRI-GEGLDQALPDLTELILTNNSLV-ELGDLDPLASLK  112 (162)
T ss_dssp             TCCSEEEC--CSSCCC-EEC---CCCCCSSCCEEECCSSCCCEE-CSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCT
T ss_pred             ccCCEEEC--CCCCCC-ccC---CcccCcchhhhhcccccccCC-Cccccccccccccceecccccc-cccccccccccc
Confidence            57999999  999998 454   488999999999999999874 3344567999999999999998 444  3678899


Q ss_pred             CCCEEeccCCcCCCCCCchhhhhcCCCCCCEEec
Q 037769          154 KLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYL  187 (200)
Q Consensus       154 ~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~L  187 (200)
                      +|++|++++|.++....--+..+..+++|++||-
T Consensus       113 ~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_         113 SLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             TCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             ccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            9999999999995321111335788999999873

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.18  E-value=1.1e-10  Score=87.39  Aligned_cols=103  Identities=20%  Similarity=0.295  Sum_probs=81.1

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .++++|++  ++|.+++ +++   +.++++|++|++++|.+..  ++ .+..+++|+.|++++|.+...  ..+..+++|
T Consensus        62 ~nL~~L~L--s~N~l~~-~~~---l~~l~~L~~L~l~~n~~~~--~~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L  130 (199)
T d2omxa2          62 NNLTQINF--SNNQLTD-ITP---LKNLTKLVDILMNNNQIAD--IT-PLANLTNLTGLTLFNNQITDI--DPLKNLTNL  130 (199)
T ss_dssp             TTCCEEEC--CSSCCCC-CGG---GTTCTTCCEEECCSSCCCC--CG-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTC
T ss_pred             CCcCcCcc--ccccccC-ccc---ccCCccccccccccccccc--cc-ccccccccccccccccccccc--cccchhhhh
Confidence            57888999  8888874 333   7788889999999888875  44 478888999999988887742  347788899


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL  194 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g  194 (200)
                      +.|++++|+++    .++ .+..+++|+.|++.+|++++
T Consensus       131 ~~L~l~~n~l~----~~~-~l~~~~~L~~L~l~~n~l~~  164 (199)
T d2omxa2         131 NRLELSSNTIS----DIS-ALSGLTSLQQLNFSSNQVTD  164 (199)
T ss_dssp             SEEECCSSCCC----CCG-GGTTCTTCSEEECCSSCCCC
T ss_pred             HHhhhhhhhhc----ccc-cccccccccccccccccccC
Confidence            99999999883    333 47888999999999998875

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.11  E-value=4.7e-13  Score=100.98  Aligned_cols=106  Identities=19%  Similarity=0.119  Sum_probs=88.6

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .+++.|+|  ++|.|. .++   .+..+++|+.|++++|.++.  +|.....+++|+.|++++|.++. ++ .+..+++|
T Consensus        48 ~~L~~L~L--s~n~I~-~i~---~l~~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~L~l~~N~i~~-l~-~~~~l~~L  117 (198)
T d1m9la_          48 KACKHLAL--STNNIE-KIS---SLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL  117 (198)
T ss_dssp             TTCCEEEC--SEEEES-CCC---CHHHHTTCCEEECCEEEECS--CSSHHHHHHHCCEEECSEEECCC-HH-HHHHHHHS
T ss_pred             cccceeEC--cccCCC-Ccc---cccCCccccChhhccccccc--ccccccccccccccccccccccc-cc-cccccccc
Confidence            57899999  999987 554   48899999999999999985  67655666789999999999984 44 47788999


Q ss_pred             CEEeccCCcCCCCCCchh--hhhcCCCCCCEEecccccCCcC
Q 037769          156 THLDLSFCVLTIEHRTFD--LLASNLTKLSLLYLGATNMSLI  195 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp--~~l~~l~~L~~L~Ls~N~l~g~  195 (200)
                      ++|++++|+++    .++  ..+..+++|+.|++++|++...
T Consensus       118 ~~L~L~~N~i~----~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         118 RVLYMSNNKIT----NWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             SEEEESEEECC----CHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             cccccccchhc----cccccccccCCCccceeecCCCccccC
Confidence            99999999994    444  4689999999999999988643

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.09  E-value=5.4e-10  Score=83.53  Aligned_cols=105  Identities=21%  Similarity=0.273  Sum_probs=88.4

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      .+++.|++  ++|.+. .++   .+.+++.|+.|+++++.+...   ..+..+++|+.|++++|.+. .++ .+..+++|
T Consensus        84 ~~L~~L~l--~~n~~~-~~~---~l~~l~~L~~L~l~~~~~~~~---~~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L  152 (199)
T d2omxa2          84 TKLVDILM--NNNQIA-DIT---PLANLTNLTGLTLFNNQITDI---DPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSL  152 (199)
T ss_dssp             TTCCEEEC--CSSCCC-CCG---GGTTCTTCSEEECCSSCCCCC---GGGTTCTTCSEEECCSSCCC-CCG-GGTTCTTC
T ss_pred             cccccccc--cccccc-ccc---ccccccccccccccccccccc---cccchhhhhHHhhhhhhhhc-ccc-cccccccc
Confidence            57999999  999876 344   378999999999999998753   35788999999999999997 444 58899999


Q ss_pred             CEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCC
Q 037769          156 THLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKP  197 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP  197 (200)
                      +.|++.+|+++    .++ .++++++|++|++++|+++. ||
T Consensus       153 ~~L~l~~n~l~----~l~-~l~~l~~L~~L~ls~N~i~~-i~  188 (199)
T d2omxa2         153 QQLNFSSNQVT----DLK-PLANLTTLERLDISSNKVSD-IS  188 (199)
T ss_dssp             SEEECCSSCCC----CCG-GGTTCTTCCEEECCSSCCCC-CG
T ss_pred             ccccccccccc----CCc-cccCCCCCCEEECCCCCCCC-Cc
Confidence            99999999995    343 48899999999999999985 54

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.07  E-value=4.2e-10  Score=84.90  Aligned_cols=106  Identities=29%  Similarity=0.277  Sum_probs=70.9

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCc---------
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVP---------  146 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P---------  146 (200)
                      .++++|++  ++|.+++ +++   +..+++|++|++++|.++.  +| .+..+++|+.|++++|.+.. ++         
T Consensus        68 ~~L~~L~L--~~n~i~~-l~~---~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~~~~~~-~~~l~~l~~l~  137 (210)
T d1h6ta2          68 PNVTKLFL--NGNKLTD-IKP---LANLKNLGWLFLDENKVKD--LS-SLKDLKKLKSLSLEHNGISD-INGLVHLPQLE  137 (210)
T ss_dssp             TTCCEEEC--CSSCCCC-CGG---GTTCTTCCEEECCSSCCCC--GG-GGTTCTTCCEEECTTSCCCC-CGGGGGCTTCC
T ss_pred             CCCCEEeC--CCccccC-ccc---cccCccccccccccccccc--cc-cccccccccccccccccccc-ccccccccccc
Confidence            46777777  7777764 333   5667777777777777764  44 36666667777666665542 11         


Q ss_pred             ------------ccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCC
Q 037769          147 ------------YEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKP  197 (200)
Q Consensus       147 ------------~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP  197 (200)
                                  ..+..+++|+++++++|+++    .++ .++++++|+.|+|++|+++. ||
T Consensus       138 ~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~----~i~-~l~~l~~L~~L~Ls~N~i~~-l~  194 (210)
T d1h6ta2         138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQIS----DIV-PLAGLTKLQNLYLSKNHISD-LR  194 (210)
T ss_dssp             EEECCSSCCCCCGGGGGCTTCSEEECCSSCCC----CCG-GGTTCTTCCEEECCSSCCCB-CG
T ss_pred             cccccccccccccccccccccccccccccccc----ccc-cccCCCCCCEEECCCCCCCC-Ch
Confidence                        22445667777888777773    333 37888899999999998874 55

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.06  E-value=5.8e-10  Score=84.09  Aligned_cols=108  Identities=20%  Similarity=0.182  Sum_probs=82.0

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      ..++.|++  +++.+.. ++.   +..+++|++|++++|.+++  ++ .+..+++|++|++++|+++ .+| .+..+++|
T Consensus        46 ~~L~~L~l--~~~~i~~-l~~---l~~l~~L~~L~L~~n~i~~--l~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L  114 (210)
T d1h6ta2          46 NSIDQIIA--NNSDIKS-VQG---IQYLPNVTKLFLNGNKLTD--IK-PLANLKNLGWLFLDENKVK-DLS-SLKDLKKL  114 (210)
T ss_dssp             HTCCEEEC--TTSCCCC-CTT---GGGCTTCCEEECCSSCCCC--CG-GGTTCTTCCEEECCSSCCC-CGG-GGTTCTTC
T ss_pred             cCccEEEC--cCCCCCC-chh---HhhCCCCCEEeCCCccccC--cc-ccccCcccccccccccccc-ccc-cccccccc
Confidence            36889999  9998873 443   7889999999999999987  45 4789999999999999998 455 58889999


Q ss_pred             CEEeccCCcCCCCCC-----------------chhhhhcCCCCCCEEecccccCCc
Q 037769          156 THLDLSFCVLTIEHR-----------------TFDLLASNLTKLSLLYLGATNMSL  194 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~-----------------~lp~~l~~l~~L~~L~Ls~N~l~g  194 (200)
                      +.|++++|.+.....                 .-+..+..+++|+++++++|++++
T Consensus       115 ~~L~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~  170 (210)
T d1h6ta2         115 KSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD  170 (210)
T ss_dssp             CEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999987742100                 011234556677777777777664

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.05  E-value=4e-10  Score=91.13  Aligned_cols=65  Identities=28%  Similarity=0.367  Sum_probs=42.9

Q ss_pred             ccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCC
Q 037769          125 FGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIK  196 (200)
Q Consensus       125 l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~i  196 (200)
                      +..+++++.|++++|++++. + .+..+++|+.|++++|+++    .++ .++++++|++|++++|++++.+
T Consensus       303 ~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~----~l~-~l~~l~~L~~L~l~~N~l~~l~  367 (384)
T d2omza2         303 ISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVS----DVS-SLANLTNINWLSAGHNQISDLT  367 (384)
T ss_dssp             GGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCC----CCG-GGGGCTTCCEEECCSSCCCBCG
T ss_pred             cchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCC----CCh-hHcCCCCCCEEECCCCcCCCCh
Confidence            45566777777777777643 2 2566777777777777774    233 4667777777777777777543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.03  E-value=4.5e-10  Score=90.81  Aligned_cols=82  Identities=20%  Similarity=0.318  Sum_probs=70.5

Q ss_pred             cccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcC
Q 037769           99 TLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASN  178 (200)
Q Consensus        99 ~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~  178 (200)
                      .+..++.++.|++++|.+++  ++ .+..+++|+.|++++|.+++ ++ .+.++++|++|++++|+++    .+++ +.+
T Consensus       302 ~~~~~~~l~~L~ls~n~l~~--l~-~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~----~l~~-l~~  371 (384)
T d2omza2         302 PISNLKNLTYLTLYFNNISD--IS-PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQIS----DLTP-LAN  371 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCSC--CG-GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCC----BCGG-GTT
T ss_pred             ccchhcccCeEECCCCCCCC--Cc-ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCC----CChh-hcc
Confidence            36677899999999999987  44 38899999999999999984 55 5899999999999999995    3443 889


Q ss_pred             CCCCCEEecccc
Q 037769          179 LTKLSLLYLGAT  190 (200)
Q Consensus       179 l~~L~~L~Ls~N  190 (200)
                      +++|+.|+|++|
T Consensus       372 l~~L~~L~L~~N  383 (384)
T d2omza2         372 LTRITQLGLNDQ  383 (384)
T ss_dssp             CTTCSEEECCCE
T ss_pred             CCCCCEeeCCCC
Confidence            999999999998

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.94  E-value=3.2e-09  Score=80.52  Aligned_cols=79  Identities=18%  Similarity=0.247  Sum_probs=38.9

Q ss_pred             ccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCC
Q 037769          100 LFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNL  179 (200)
Q Consensus       100 l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l  179 (200)
                      +..++.|+.|++++|.+...  + .+..+++|+.|++++|++++ ++. +..+++|++|+|++|+++    .++. ++++
T Consensus       147 ~~~~~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt----~i~~-l~~l  216 (227)
T d1h6ua2         147 LAGLTNLQYLSIGNAQVSDL--T-PLANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQIS----DVSP-LANT  216 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCCC--G-GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCC----BCGG-GTTC
T ss_pred             hccccccccccccccccccc--h-hhcccccceecccCCCccCC-Chh-hcCCCCCCEEECcCCcCC----CCcc-cccC
Confidence            34445555555555555431  1 24555555555555555542 222 445555555555555553    2222 4555


Q ss_pred             CCCCEEecc
Q 037769          180 TKLSLLYLG  188 (200)
Q Consensus       180 ~~L~~L~Ls  188 (200)
                      ++|++|+++
T Consensus       217 ~~L~~L~ls  225 (227)
T d1h6ua2         217 SNLFIVTLT  225 (227)
T ss_dssp             TTCCEEEEE
T ss_pred             CCCCEEEee
Confidence            555555554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=2.2e-09  Score=81.87  Aligned_cols=98  Identities=17%  Similarity=0.237  Sum_probs=74.5

Q ss_pred             ccccceEecCC---------CCcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCC-ChhccCCCCCCE
Q 037769           64 CSWDGVTCDNV---------TGNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQL-SPEFGRLKELTY  133 (200)
Q Consensus        64 c~w~gv~c~~~---------~~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~-p~~l~~l~~L~~  133 (200)
                      |....|.|...         ...+++|++  ++|.+....+.  .|.++++|++|++++|.+... + +..+..++.++.
T Consensus         8 C~~~~i~c~~~~l~~iP~~l~~~l~~L~L--s~n~i~~l~~~--~f~~l~~L~~L~ls~n~~~~~-i~~~~f~~l~~l~~   82 (242)
T d1xwdc1           8 CSNRVFLCQESKVTEIPSDLPRNAIELRF--VLTKLRVIQKG--AFSGFGDLEKIEISQNDVLEV-IEADVFSNLPKLHE   82 (242)
T ss_dssp             ECSSEEEEESCSCSSCCSCSCSCCSEEEE--ESCCCCEECTT--TTTTCTTCCEEEEESCTTCCE-ECSSSEESCTTCCE
T ss_pred             CcCCEEEEeCCCCCCcCCCCCCCCCEEEC--cCCcCCccChh--Hhhccchhhhhhhccccccce-eecccccccccccc
Confidence            56677777532         246889999  99998854444  688899999999999988764 4 345778888888


Q ss_pred             EeccC-CcCCCCCcccccCCCCCCEEeccCCcCC
Q 037769          134 LNLSA-SNFGGLVPYEMSHSSKLTHLDLSFCVLT  166 (200)
Q Consensus       134 L~Ls~-n~l~~~~P~~l~~l~~L~~L~Ls~N~l~  166 (200)
                      +.+.. |.+....+..+.++++|+++++++|.++
T Consensus        83 l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          83 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             EEEECCTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             ccccccccccccccccccccccccccccchhhhc
Confidence            88754 5666556667888899999999988874

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.84  E-value=1e-08  Score=77.62  Aligned_cols=108  Identities=19%  Similarity=0.258  Sum_probs=77.3

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCC-------------------CCChhccCCCCCCEEec
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGS-------------------QLSPEFGRLKELTYLNL  136 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~-------------------~~p~~l~~l~~L~~L~L  136 (200)
                      .+++.+++  ++|.++ .++   .+.+++.|+.++++++...+.                   .....+..+++|+.|++
T Consensus        85 ~~l~~l~~--~~n~~~-~i~---~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l  158 (227)
T d1h6ua2          85 TKITELEL--SGNPLK-NVS---AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSI  158 (227)
T ss_dssp             CSCCEEEC--CSCCCS-CCG---GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEEC
T ss_pred             cccccccc--cccccc-ccc---cccccccccccccccccccccchhccccchhhhhchhhhhchhhhhccccccccccc
Confidence            45667777  666655 333   256666666666666654432                   01123566788999999


Q ss_pred             cCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCcCCC
Q 037769          137 SASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSLIKP  197 (200)
Q Consensus       137 s~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g~iP  197 (200)
                      ++|.+... + .+.++++|+.|+|++|+++    .++. ++++++|++|++++|++++ ||
T Consensus       159 ~~n~~~~~-~-~l~~l~~L~~L~Ls~n~l~----~l~~-l~~l~~L~~L~Ls~N~lt~-i~  211 (227)
T d1h6ua2         159 GNAQVSDL-T-PLANLSKLTTLKADDNKIS----DISP-LASLPNLIEVHLKNNQISD-VS  211 (227)
T ss_dssp             CSSCCCCC-G-GGTTCTTCCEEECCSSCCC----CCGG-GGGCTTCCEEECTTSCCCB-CG
T ss_pred             cccccccc-h-hhcccccceecccCCCccC----CChh-hcCCCCCCEEECcCCcCCC-Cc
Confidence            99998743 2 3789999999999999994    3443 7899999999999999985 44

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.80  E-value=3.7e-11  Score=90.32  Aligned_cols=91  Identities=20%  Similarity=0.287  Sum_probs=76.5

Q ss_pred             ccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCCEEeccCCcCCCCCCch
Q 037769           93 TIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLTHLDLSFCVLTIEHRTF  172 (200)
Q Consensus        93 ~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~~L~Ls~N~l~~~~~~l  172 (200)
                      .++.  .+..+++|++|+|++|.++.  ++ .+..+++|+.|++++|.++ .+|.....+++|+.|++++|+++    .+
T Consensus        39 ~l~~--sl~~L~~L~~L~Ls~n~I~~--i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~----~l  108 (198)
T d1m9la_          39 KMDA--TLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA----SL  108 (198)
T ss_dssp             CCHH--HHHHTTTCCEEECSEEEESC--CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECC----CH
T ss_pred             hhhh--HHhcccccceeECcccCCCC--cc-cccCCccccChhhcccccc-ccccccccccccccccccccccc----cc
Confidence            3444  68889999999999999985  55 5889999999999999998 67765566678999999999994    45


Q ss_pred             hhhhcCCCCCCEEecccccCCc
Q 037769          173 DLLASNLTKLSLLYLGATNMSL  194 (200)
Q Consensus       173 p~~l~~l~~L~~L~Ls~N~l~g  194 (200)
                      + .+..+++|++|++++|+|+.
T Consensus       109 ~-~~~~l~~L~~L~L~~N~i~~  129 (198)
T d1m9la_         109 S-GIEKLVNLRVLYMSNNKITN  129 (198)
T ss_dssp             H-HHHHHHHSSEEEESEEECCC
T ss_pred             c-cccccccccccccccchhcc
Confidence            4 47888999999999999874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.7e-08  Score=76.86  Aligned_cols=104  Identities=15%  Similarity=0.112  Sum_probs=82.8

Q ss_pred             EEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcc-cccCCCCCCEE
Q 037769           80 GLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPY-EMSHSSKLTHL  158 (200)
Q Consensus        80 ~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~-~l~~l~~L~~L  158 (200)
                      .++.  ++.+++ .+|+  .+.  +++++|++++|.++.. .+..|.++++|++|++++|.+...++. .+.+++.++.+
T Consensus        12 ~i~c--~~~~l~-~iP~--~l~--~~l~~L~Ls~n~i~~l-~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l   83 (242)
T d1xwdc1          12 VFLC--QESKVT-EIPS--DLP--RNAIELRFVLTKLRVI-QKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI   83 (242)
T ss_dssp             EEEE--ESCSCS-SCCS--CSC--SCCSEEEEESCCCCEE-CTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEE
T ss_pred             EEEE--eCCCCC-CcCC--CCC--CCCCEEECcCCcCCcc-ChhHhhccchhhhhhhccccccceeeccccccccccccc
Confidence            5777  777777 7776  453  5899999999999863 334689999999999999998865544 67889999999


Q ss_pred             eccC-CcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769          159 DLSF-CVLTIEHRTFDLLASNLTKLSLLYLGATNMSL  194 (200)
Q Consensus       159 ~Ls~-N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g  194 (200)
                      .+.. |++.   ...+..+..+++|++|++++|.+..
T Consensus        84 ~~~~~n~l~---~~~~~~~~~l~~L~~l~l~~~~l~~  117 (242)
T d1xwdc1          84 RIEKANNLL---YINPEAFQNLPNLQYLLISNTGIKH  117 (242)
T ss_dssp             EEECCTTCC---EECTTSEECCTTCCEEEEESCCCCS
T ss_pred             ccccccccc---ccccccccccccccccccchhhhcc
Confidence            8764 5662   3445668999999999999999874

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.73  E-value=2.6e-08  Score=78.90  Aligned_cols=96  Identities=18%  Similarity=0.159  Sum_probs=76.9

Q ss_pred             cEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCCC
Q 037769           77 NVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKLT  156 (200)
Q Consensus        77 ~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L~  156 (200)
                      ++++|+|  ++++++ .+|+  .   +++|++|++++|+++.  +|..   +.+|+.|++++|.++ .++..   .+.|+
T Consensus        39 ~l~~LdL--s~~~L~-~lp~--~---~~~L~~L~Ls~N~l~~--lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~  101 (353)
T d1jl5a_          39 QAHELEL--NNLGLS-SLPE--L---PPHLESLVASCNSLTE--LPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLE  101 (353)
T ss_dssp             TCSEEEC--TTSCCS-CCCS--C---CTTCSEEECCSSCCSS--CCCC---CTTCCEEECCSSCCS-CCCSC---CTTCC
T ss_pred             CCCEEEe--CCCCCC-CCCC--C---CCCCCEEECCCCCCcc--cccc---hhhhhhhhhhhcccc-hhhhh---ccccc
Confidence            5789999  999987 5776  3   4689999999999985  7754   468899999999988 45432   24699


Q ss_pred             EEeccCCcCCCCCCchhhhhcCCCCCCEEecccccCCc
Q 037769          157 HLDLSFCVLTIEHRTFDLLASNLTKLSLLYLGATNMSL  194 (200)
Q Consensus       157 ~L~Ls~N~l~~~~~~lp~~l~~l~~L~~L~Ls~N~l~g  194 (200)
                      +|++++|.++    .+|. ++.+++|++|++++|.+.+
T Consensus       102 ~L~L~~n~l~----~lp~-~~~l~~L~~L~l~~~~~~~  134 (353)
T d1jl5a_         102 YLGVSNNQLE----KLPE-LQNSSFLKIIDVDNNSLKK  134 (353)
T ss_dssp             EEECCSSCCS----SCCC-CTTCTTCCEEECCSSCCSC
T ss_pred             cccccccccc----cccc-hhhhccceeeccccccccc
Confidence            9999999994    4564 6789999999999998874

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=6.8e-09  Score=85.01  Aligned_cols=115  Identities=23%  Similarity=0.265  Sum_probs=85.5

Q ss_pred             CcEEEEEcccCCCCCeec-cCCCccccCCCCCcEEEccCCCCCCC---CCChhccCCCCCCEEeccCCcCCCC----Ccc
Q 037769           76 GNVIGLDLYSSCSWLVGT-IDDNSTLFHLSHLQSLNLAYSNFLGS---QLSPEFGRLKELTYLNLSASNFGGL----VPY  147 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~-~p~~~~l~~l~~L~~L~L~~n~l~~~---~~p~~l~~l~~L~~L~Ls~n~l~~~----~P~  147 (200)
                      .+++.||+  +++++++. +..  .+..++++++|+|++|.++..   .+...+..+++|+.|+|++|.++..    +..
T Consensus         2 ~~l~~ld~--~~~~i~~~~~~~--l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~   77 (460)
T d1z7xw1           2 LDIQSLDI--QCEELSDARWAE--LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ   77 (460)
T ss_dssp             EEEEEEEE--ESCCCCHHHHHH--HHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred             CCCCEEEe--eCCcCChHHHHH--HHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHH
Confidence            36899999  99999853 233  466789999999999998732   0345567899999999999988521    222


Q ss_pred             ccc-CCCCCCEEeccCCcCCCCC-CchhhhhcCCCCCCEEecccccCCc
Q 037769          148 EMS-HSSKLTHLDLSFCVLTIEH-RTFDLLASNLTKLSLLYLGATNMSL  194 (200)
Q Consensus       148 ~l~-~l~~L~~L~Ls~N~l~~~~-~~lp~~l~~l~~L~~L~Ls~N~l~g  194 (200)
                      .+. ...+|++|+|++|++++.. ..++..+..+++|++|++++|.++.
T Consensus        78 ~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          78 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             HHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            222 2357999999999996311 1256678899999999999998753

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=8e-08  Score=75.32  Aligned_cols=108  Identities=25%  Similarity=0.329  Sum_probs=79.6

Q ss_pred             CcEEEEEcccCCCCCeec-cCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCC-cCCCC-CcccccCC
Q 037769           76 GNVIGLDLYSSCSWLVGT-IDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSAS-NFGGL-VPYEMSHS  152 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~-~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n-~l~~~-~P~~l~~l  152 (200)
                      .++++|++  +++.+... +..  .+..+++|++|++.++.++.. .+..+..+++|+.|+++++ .++.. +......+
T Consensus        46 ~~L~~LdL--s~~~i~~~~l~~--l~~~c~~L~~L~L~~~~l~~~-~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~  120 (284)
T d2astb2          46 FRVQHMDL--SNSVIEVSTLHG--ILSQCSKLQNLSLEGLRLSDP-IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC  120 (284)
T ss_dssp             BCCCEEEC--TTCEECHHHHHH--HHTTBCCCSEEECTTCBCCHH-HHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred             CCCCEEEC--CCCccCHHHHHH--HHHhCCCcccccccccCCCcH-HHHHHhcCCCCcCccccccccccccccchhhHHH
Confidence            57899999  98887643 344  567899999999999998766 6778889999999999995 45422 22334578


Q ss_pred             CCCCEEeccCC-cCCCCCCchhhhhcC-CCCCCEEecccc
Q 037769          153 SKLTHLDLSFC-VLTIEHRTFDLLASN-LTKLSLLYLGAT  190 (200)
Q Consensus       153 ~~L~~L~Ls~N-~l~~~~~~lp~~l~~-l~~L~~L~Ls~N  190 (200)
                      ++|++|+++++ .++  ...+...+.. .++|+.|+++++
T Consensus       121 ~~L~~L~ls~c~~~~--~~~~~~~~~~~~~~L~~L~l~~~  158 (284)
T d2astb2         121 SRLDELNLSWCFDFT--EKHVQVAVAHVSETITQLNLSGY  158 (284)
T ss_dssp             TTCCEEECCCCTTCC--HHHHHHHHHHSCTTCCEEECCSC
T ss_pred             Hhccccccccccccc--cccchhhhcccccccchhhhccc
Confidence            99999999985 453  1233344444 478999999864

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.25  E-value=4.7e-06  Score=65.43  Aligned_cols=104  Identities=23%  Similarity=0.237  Sum_probs=77.9

Q ss_pred             CcEEEEEcccCCCCCeeccCCCccccCCCCCcEEEccCCCCCCCCCChhccCCCCCCEEeccCCcCCCCCcccccCCCCC
Q 037769           76 GNVIGLDLYSSCSWLVGTIDDNSTLFHLSHLQSLNLAYSNFLGSQLSPEFGRLKELTYLNLSASNFGGLVPYEMSHSSKL  155 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~~p~~~~l~~l~~L~~L~L~~n~l~~~~~p~~l~~l~~L~~L~Ls~n~l~~~~P~~l~~l~~L  155 (200)
                      ++++.|++  ++|.|+ .+|.  .   +.+|+.|++++|.++.  ++. +  .+.|++|++++|.+. .+|. ++.+++|
T Consensus        58 ~~L~~L~L--s~N~l~-~lp~--~---~~~L~~L~l~~n~l~~--l~~-l--p~~L~~L~L~~n~l~-~lp~-~~~l~~L  122 (353)
T d1jl5a_          58 PHLESLVA--SCNSLT-ELPE--L---PQSLKSLLVDNNNLKA--LSD-L--PPLLEYLGVSNNQLE-KLPE-LQNSSFL  122 (353)
T ss_dssp             TTCSEEEC--CSSCCS-SCCC--C---CTTCCEEECCSSCCSC--CCS-C--CTTCCEEECCSSCCS-SCCC-CTTCTTC
T ss_pred             CCCCEEEC--CCCCCc-cccc--c---hhhhhhhhhhhcccch--hhh-h--ccccccccccccccc-cccc-hhhhccc
Confidence            57899999  999998 6776  4   4578999999999875  443 1  246999999999998 5675 6789999


Q ss_pred             CEEeccCCcCCCCCC---------------chhhhhcCCCCCCEEecccccCCc
Q 037769          156 THLDLSFCVLTIEHR---------------TFDLLASNLTKLSLLYLGATNMSL  194 (200)
Q Consensus       156 ~~L~Ls~N~l~~~~~---------------~lp~~l~~l~~L~~L~Ls~N~l~g  194 (200)
                      ++|++++|.++....               .....+..++.++.|+++.|.+..
T Consensus       123 ~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         123 KIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             CEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS
T ss_pred             eeeccccccccccccccccccchhhccccccccccccccccceecccccccccc
Confidence            999999987743211               112345667788888888887764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=2e-07  Score=67.10  Aligned_cols=92  Identities=22%  Similarity=0.187  Sum_probs=66.4

Q ss_pred             cccCCCCCcEEEccCCCCCCCC-CChhccCCCCCCEEeccCCcCCCCCcc-cccCCCCCCEEeccCCcCCCCCCch----
Q 037769           99 TLFHLSHLQSLNLAYSNFLGSQ-LSPEFGRLKELTYLNLSASNFGGLVPY-EMSHSSKLTHLDLSFCVLTIEHRTF----  172 (200)
Q Consensus        99 ~l~~l~~L~~L~L~~n~l~~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~P~-~l~~l~~L~~L~Ls~N~l~~~~~~l----  172 (200)
                      ....++.|++|++++|.++... ++..+..+++|+.|+|++|.++. +++ .......|+.|++++|.++......    
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~-l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~  138 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ERELDKIKGLKLEELWLDGNSLSDTFRDQSTYI  138 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCC-GGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHH
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcccc-chhhhhhhccccceeecCCCCcCcCcccchhHH
Confidence            3456899999999999998631 23456779999999999999984 443 3334557999999999995322211    


Q ss_pred             hhhhcCCCCCCEEecccccCC
Q 037769          173 DLLASNLTKLSLLYLGATNMS  193 (200)
Q Consensus       173 p~~l~~l~~L~~L~Ls~N~l~  193 (200)
                      ...+..+++|+.||  ++.+.
T Consensus       139 ~~i~~~~P~L~~LD--g~~v~  157 (162)
T d1koha1         139 SAIRERFPKLLRLD--GHELP  157 (162)
T ss_dssp             HHHHTTSTTCCEET--TEECC
T ss_pred             HHHHHHCCCCCEEC--cCCCc
Confidence            23467889999886  55543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.20  E-value=1.7e-07  Score=74.96  Aligned_cols=115  Identities=17%  Similarity=0.169  Sum_probs=79.2

Q ss_pred             CcEEEEEcccCCCCCeec-----cCCCccccCCCCCcEEEccCCCCCCCC---CChhccCCCCCCEEeccCCcCCCCCc-
Q 037769           76 GNVIGLDLYSSCSWLVGT-----IDDNSTLFHLSHLQSLNLAYSNFLGSQ---LSPEFGRLKELTYLNLSASNFGGLVP-  146 (200)
Q Consensus        76 ~~l~~L~L~~~~n~l~~~-----~p~~~~l~~l~~L~~L~L~~n~l~~~~---~p~~l~~l~~L~~L~Ls~n~l~~~~P-  146 (200)
                      ..++.|++  ++|.+...     +..  .+..+++|+.|++++|.++...   +...+...++|++|+|++|.+++.-. 
T Consensus       186 ~~L~~L~L--~~n~i~~~g~~~~l~~--~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~  261 (344)
T d2ca6a1         186 RLLHTVKM--VQNGIRPEGIEHLLLE--GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  261 (344)
T ss_dssp             TTCCEEEC--CSSCCCHHHHHHHHHT--TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             hhhccccc--ccccccccccccchhh--hhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhH
Confidence            46888999  88887632     334  5677888999999999875320   23456778899999999998875322 


Q ss_pred             ---cccc--CCCCCCEEeccCCcCCCC-CCchhhhhc-CCCCCCEEecccccCCc
Q 037769          147 ---YEMS--HSSKLTHLDLSFCVLTIE-HRTFDLLAS-NLTKLSLLYLGATNMSL  194 (200)
Q Consensus       147 ---~~l~--~l~~L~~L~Ls~N~l~~~-~~~lp~~l~-~l~~L~~L~Ls~N~l~g  194 (200)
                         ..+.  ..+.|++|++++|+++.. ...+...+. ++++|++|++++|.+..
T Consensus       262 ~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence               2232  236799999999988420 011333443 67889999999998864

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=1.3e-06  Score=68.25  Aligned_cols=108  Identities=24%  Similarity=0.221  Sum_probs=53.5

Q ss_pred             CcEEEEEcccCCCC-Ceec-cCCCccccC-CCCCcEEEccCCC--CCCCCCChhccCCCCCCEEeccCC-cCCCCCcccc
Q 037769           76 GNVIGLDLYSSCSW-LVGT-IDDNSTLFH-LSHLQSLNLAYSN--FLGSQLSPEFGRLKELTYLNLSAS-NFGGLVPYEM  149 (200)
Q Consensus        76 ~~l~~L~L~~~~n~-l~~~-~p~~~~l~~-l~~L~~L~L~~n~--l~~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~P~~l  149 (200)
                      .++++|++  +++. ++.. +..  .+.. .+.|+.|+++++.  ++...+...+..+++|+.|++++| .+++.....+
T Consensus       121 ~~L~~L~l--s~c~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l  196 (284)
T d2astb2         121 SRLDELNL--SWCFDFTEKHVQV--AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF  196 (284)
T ss_dssp             TTCCEEEC--CCCTTCCHHHHHH--HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG
T ss_pred             Hhcccccc--ccccccccccchh--hhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhh
Confidence            46777777  6642 3211 111  1222 3456666666532  221112222334566666666654 3444445555


Q ss_pred             cCCCCCCEEeccCC-cCCCCCCchhhhhcCCCCCCEEecccc
Q 037769          150 SHSSKLTHLDLSFC-VLTIEHRTFDLLASNLTKLSLLYLGAT  190 (200)
Q Consensus       150 ~~l~~L~~L~Ls~N-~l~~~~~~lp~~l~~l~~L~~L~Ls~N  190 (200)
                      ..+++|++|+++++ .++   ......++++++|+.|+++++
T Consensus       197 ~~~~~L~~L~L~~C~~i~---~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         197 FQLNYLQHLSLSRCYDII---PETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGCTTCCEEECTTCTTCC---GGGGGGGGGCTTCCEEECTTS
T ss_pred             cccCcCCEEECCCCCCCC---hHHHHHHhcCCCCCEEeeeCC
Confidence            66666666666663 442   222334555666666666554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=5.8e-08  Score=70.06  Aligned_cols=71  Identities=24%  Similarity=0.112  Sum_probs=53.8

Q ss_pred             ChhccCCCCCCEEeccCCcCCCC--CcccccCCCCCCEEeccCCcCCCCCCchhh-hhcCCCCCCEEecccccCCcCC
Q 037769          122 SPEFGRLKELTYLNLSASNFGGL--VPYEMSHSSKLTHLDLSFCVLTIEHRTFDL-LASNLTKLSLLYLGATNMSLIK  196 (200)
Q Consensus       122 p~~l~~l~~L~~L~Ls~n~l~~~--~P~~l~~l~~L~~L~Ls~N~l~~~~~~lp~-~l~~l~~L~~L~Ls~N~l~g~i  196 (200)
                      +.....++.|++|+|++|+++..  ++..+..+++|+.|+|++|.++    .+++ .......|+.|++++|++....
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~----~l~~l~~l~~~~L~~L~L~~Npl~~~~  131 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK----SERELDKIKGLKLEELWLDGNSLSDTF  131 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC----CGGGHHHHTTCCCSSCCCTTSTTSSSS
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc----cchhhhhhhccccceeecCCCCcCcCc
Confidence            33445689999999999999853  2345677899999999999995    3433 2334457999999999998643

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=1.1e-06  Score=71.49  Aligned_cols=91  Identities=19%  Similarity=0.077  Sum_probs=40.3

Q ss_pred             CCCCcEEEccCCCCCCCC---CChhcc-CCCCCCEEeccCCcCCCC----CcccccCCCCCCEEeccCCcCCCC-CCchh
Q 037769          103 LSHLQSLNLAYSNFLGSQ---LSPEFG-RLKELTYLNLSASNFGGL----VPYEMSHSSKLTHLDLSFCVLTIE-HRTFD  173 (200)
Q Consensus       103 l~~L~~L~L~~n~l~~~~---~p~~l~-~l~~L~~L~Ls~n~l~~~----~P~~l~~l~~L~~L~Ls~N~l~~~-~~~lp  173 (200)
                      ..+|++|+|++|.++...   ++..+. ..+.|++|+|++|.++..    ++..+..+++|++|+|++|+++.. ...+.
T Consensus       339 ~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~  418 (460)
T d1z7xw1         339 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLV  418 (460)
T ss_dssp             CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHH
T ss_pred             ccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHH
Confidence            345566666665554210   122222 234466666666655421    223344445566666666655310 00011


Q ss_pred             hhhc-CCCCCCEEecccccCC
Q 037769          174 LLAS-NLTKLSLLYLGATNMS  193 (200)
Q Consensus       174 ~~l~-~l~~L~~L~Ls~N~l~  193 (200)
                      ..+. +...|+.|++.+|.+.
T Consensus       419 ~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         419 ESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             HHHTSTTCCCCEEECTTCCCC
T ss_pred             HHHHhCCCccCEEECCCCCCC
Confidence            1222 2234566666655554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.86  E-value=1.7e-06  Score=68.86  Aligned_cols=94  Identities=18%  Similarity=0.206  Sum_probs=60.6

Q ss_pred             ccCCCCCcEEEccCCCCCCCC----CChhccCCCCCCEEeccCCcCCCC----CcccccCCCCCCEEeccCCcCCCC-CC
Q 037769          100 LFHLSHLQSLNLAYSNFLGSQ----LSPEFGRLKELTYLNLSASNFGGL----VPYEMSHSSKLTHLDLSFCVLTIE-HR  170 (200)
Q Consensus       100 l~~l~~L~~L~L~~n~l~~~~----~p~~l~~l~~L~~L~Ls~n~l~~~----~P~~l~~l~~L~~L~Ls~N~l~~~-~~  170 (200)
                      +...+.|+.|+++.|.+....    +...+...++|+.|++++|.++..    +...+..+++|++|+|++|.+++. ..
T Consensus       182 l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~  261 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  261 (344)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             hhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhH
Confidence            445677888888888875310    122355677888888888887532    334566778888888888888420 01


Q ss_pred             chhhhhcC--CCCCCEEecccccCC
Q 037769          171 TFDLLASN--LTKLSLLYLGATNMS  193 (200)
Q Consensus       171 ~lp~~l~~--l~~L~~L~Ls~N~l~  193 (200)
                      .+-..+..  ...|++|++++|+|.
T Consensus       262 ~l~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         262 AVVDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             HHHHHhhhccCCCCCEEECCCCcCC
Confidence            12233333  356888888888875

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.61  E-value=2.2e-05  Score=56.28  Aligned_cols=112  Identities=8%  Similarity=0.042  Sum_probs=78.5

Q ss_pred             CcEEEEEcccCCC-CCeec----cCCCccccCCCCCcEEEccCCCCCCC---CCChhccCCCCCCEEeccCCcCCCC---
Q 037769           76 GNVIGLDLYSSCS-WLVGT----IDDNSTLFHLSHLQSLNLAYSNFLGS---QLSPEFGRLKELTYLNLSASNFGGL---  144 (200)
Q Consensus        76 ~~l~~L~L~~~~n-~l~~~----~p~~~~l~~l~~L~~L~L~~n~l~~~---~~p~~l~~l~~L~~L~Ls~n~l~~~---  144 (200)
                      ..+++|+|  +++ .+...    +..  .+...+.|+.|+|++|.+...   .+...+...+.|+.|+|++|.++..   
T Consensus        15 ~~L~~L~L--~~~~~i~~~~~~~l~~--~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~   90 (167)
T d1pgva_          15 TDLKEVNI--NNMKRVSKERIRSLIE--AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA   90 (167)
T ss_dssp             SSCCEEEC--TTCCSSCHHHHHHHHH--HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             CCCcEEEe--CCCCCCCHHHHHHHHH--HHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHH
Confidence            57999999  864 45422    233  466778899999999988632   1233455678899999999998743   


Q ss_pred             -CcccccCCCCCCEEeccCCcCCCCC----CchhhhhcCCCCCCEEeccccc
Q 037769          145 -VPYEMSHSSKLTHLDLSFCVLTIEH----RTFDLLASNLTKLSLLYLGATN  191 (200)
Q Consensus       145 -~P~~l~~l~~L~~L~Ls~N~l~~~~----~~lp~~l~~l~~L~~L~Ls~N~  191 (200)
                       +-..+...+.|++|++++|.+....    ..+...+...++|+.|+++.+.
T Consensus        91 ~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          91 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence             2234667788999999988763211    1245566777899999987764

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.39  E-value=3.5e-05  Score=55.18  Aligned_cols=93  Identities=13%  Similarity=0.036  Sum_probs=65.9

Q ss_pred             cCCCCCcEEEccCC-CCCCCC---CChhccCCCCCCEEeccCCcCCCC----CcccccCCCCCCEEeccCCcCCCC-CCc
Q 037769          101 FHLSHLQSLNLAYS-NFLGSQ---LSPEFGRLKELTYLNLSASNFGGL----VPYEMSHSSKLTHLDLSFCVLTIE-HRT  171 (200)
Q Consensus       101 ~~l~~L~~L~L~~n-~l~~~~---~p~~l~~l~~L~~L~Ls~n~l~~~----~P~~l~~l~~L~~L~Ls~N~l~~~-~~~  171 (200)
                      .+.+.|++|+|+++ .+....   +-..+...++|+.|+|++|.+...    +...+...+.|+.|+|++|.++.. ...
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            34688999999974 454220   123466778999999999998632    333455678999999999999521 012


Q ss_pred             hhhhhcCCCCCCEEecccccCC
Q 037769          172 FDLLASNLTKLSLLYLGATNMS  193 (200)
Q Consensus       172 lp~~l~~l~~L~~L~Ls~N~l~  193 (200)
                      +-..+...++|++|++++|.+.
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHHHhCCcCCEEECCCCcCC
Confidence            3446777889999999998654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.49  E-value=0.00041  Score=49.02  Aligned_cols=113  Identities=12%  Similarity=0.048  Sum_probs=76.8

Q ss_pred             CcEEEEEcccCC-CCCeec----cCCCccccCCCCCcEEEccCCCCCCCC---CChhccCCCCCCEEeccCCcCCCC---
Q 037769           76 GNVIGLDLYSSC-SWLVGT----IDDNSTLFHLSHLQSLNLAYSNFLGSQ---LSPEFGRLKELTYLNLSASNFGGL---  144 (200)
Q Consensus        76 ~~l~~L~L~~~~-n~l~~~----~p~~~~l~~l~~L~~L~L~~n~l~~~~---~p~~l~~l~~L~~L~Ls~n~l~~~---  144 (200)
                      ..++.|++  ++ +.+...    +..  .+...++|++|++++|.++...   +-..+...++++.+++++|.+...   
T Consensus        17 ~~L~~L~L--~~~~~i~~~~~~~l~~--al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          17 PDLEEVNL--NNIMNIPVPTLKACAE--ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             TTCCEEEC--TTCTTCCHHHHHHHHH--HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             CCCcEEEc--CCCCCCCHHHHHHHHH--HHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            57899999  76 445422    233  4667889999999999886431   112345678999999999988643   


Q ss_pred             -CcccccCCCCCCEEec--cCCcCCCC-CCchhhhhcCCCCCCEEecccccC
Q 037769          145 -VPYEMSHSSKLTHLDL--SFCVLTIE-HRTFDLLASNLTKLSLLYLGATNM  192 (200)
Q Consensus       145 -~P~~l~~l~~L~~L~L--s~N~l~~~-~~~lp~~l~~l~~L~~L~Ls~N~l  192 (200)
                       +-..+...++|+.++|  +.|.+... ...+...+...++|+.|+++.+..
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence             2345667788887666  45666310 013556677889999999987653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.73  E-value=0.0013  Score=46.39  Aligned_cols=94  Identities=10%  Similarity=0.032  Sum_probs=64.0

Q ss_pred             ccCCCCCcEEEccC-CCCCCCC---CChhccCCCCCCEEeccCCcCCCC----CcccccCCCCCCEEeccCCcCCCC-CC
Q 037769          100 LFHLSHLQSLNLAY-SNFLGSQ---LSPEFGRLKELTYLNLSASNFGGL----VPYEMSHSSKLTHLDLSFCVLTIE-HR  170 (200)
Q Consensus       100 l~~l~~L~~L~L~~-n~l~~~~---~p~~l~~l~~L~~L~Ls~n~l~~~----~P~~l~~l~~L~~L~Ls~N~l~~~-~~  170 (200)
                      ..+.+.|++|++++ +.++...   +-..+...++|+.|++++|.++..    +-..+...+.++.+++++|.++.. ..
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            34568999999997 4564321   223456789999999999988743    223455678999999999998421 01


Q ss_pred             chhhhhcCCCCCCEEecc--cccCC
Q 037769          171 TFDLLASNLTKLSLLYLG--ATNMS  193 (200)
Q Consensus       171 ~lp~~l~~l~~L~~L~Ls--~N~l~  193 (200)
                      .+-..+...++|+.++|+  .|.+.
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~  117 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLG  117 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHHhCccccEEeeccCCCcCc
Confidence            234567788899986664  55553