Citrus Sinensis ID: 037776

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710------
Protein Sequence
MEEDKQSGVVDRKRQTRQKNGGSTKQTINKTSPEYIRTHSCGSRLRGNSANDTDRPEQLLKTKCRRMRRKIARELFPSNSHSNEQCNKHSRTGMGCKTQMPTGRCSDDDDESQEENNDEEDQIEGYSSENDKGCMYRLTDYETPCHVGEWFKFENPPRHKMILYHGQRFRDVSHFRKAIEVFAIRDGFKLCVMENRAHAVSYECSDLRCDWKIKAERVVNGRTFIVTEFVAQHKCTRRHQQFQHRSKWISAIYLHRWKLQPNLRTVDIKDEIKATYGVVCHEAKLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWVFFIKNINNALRLDHGEGLCIMGDGDNGIDYAIEEFLPKAVYRQCCLKIFTEMVKRFPTAPVEHFFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSWALFTIPKWVKCICVTLSITDKLRNYLHQYLEMSIASRYVAIARLTAELFERRRMEVWNWYREKVTPTVREVIKDRTIDGQRFVLVEENGNRLKLIDTTSIIFYLNMEAQSCSCGLRQKSGIPCAHACKGIQLIMGNVEEYVDNMMSVQNFCSMYVPGMMPFPEKHAWKWAACNKLLPPMIESVNTLSMKGSNESASSRARQCIENNSDAATNNPQVHMVL
Secondary Structure (PSIPRED)
ccccccccccccccHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccEEccHHHHHHHHHHHHHHccEEEEEEEEcccEEEEcccccccccEEEEEEEEccEEEEEEEEcccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccccHHccHHHHHHHHHHHccccEEEEEccccccccccHHHHHccccEEEEEEcccccccccccEEEEEEEEccccccEEEEEEEEcccccccHHHHHHHHHHHHcccccccEEEEccccccccccHHcccccEEEEcHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHccccccccccccccccEEEEEccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccEEEEEEEcccEEEEEEcccEEEEEEccccEEEcccccccccccHHHHHHHHHHHcccHHHccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHccccccccccccEEEEEccccccEEEccccccccccccccccccccccccccccccccccccEEEEEcccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccEEEEcEEcccHHHHHHHHHHHHHHccccEEEEEccccEEEEEEccccccEEEEEEEcccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHcccEEcHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHccccEEEEEcEEEccccccEEEEEEEEcccccEEEEEEEEEEccccHHHHHHHHHHHHHccccccccEEEEEcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccEEEEEccccEEEEEEcccEEEEEEcccccccccccccccccHHHHHHHHHHccccHHHHHHHHccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccEEEEc
Coil and Loop (DISEMBL)
meedkqsgvvdrkrqtrqknggstkqtinktspeyirthscgsrlrgnsandtdrpEQLLKTKCRRMRRKIARelfpsnshsneqcnkhsrtgmgcktqmptgrcsddddesqeenndeedqiegyssendkgcmyrltdyetpchvgewfkfenpprhkmilyhgqrfrdvSHFRKAIEVFAIRDGFKLCVMENRAHAVSYECSDLRCDWKIKAERVVNGRTFIVTEFVAQHKCTRRHQQFQHRSKWISAIYLHRwklqpnlrtvdikDEIKATYGVVCHEAKLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKrheygeertsyAFKNHCRRLLAVdgwkinnpyNSVMLVAAAldgnngilpiaFCEVHVEDLDSWVFFIKNINNAlrldhgeglcimgdgdngIDYAIEEFLPKAVYRQCCLKIFTEMVkrfptapvehffwsacrstsaTSFNKYMDLIHNESEECHDWLLqtdwsswalftipkwVKCICVTLSITDKLRNYLHQYLEMSIASRYVAIARLTAELFERRRMEVWNWYREKVTPTVREVIKDRTIDGQRFVLVEEngnrlklidtTSIIFYLNMEaqscscglrqksgipcahaCKGIQLIMGNVEEYVDNMMSVQNFCsmyvpgmmpfpekhAWKWAACnkllppmiesvntlsmkgsnesaSSRARQCIennsdaatnnpqvhmvl
Flexible Loop (DISEMBL)
meedkqsgvvdrkrqtrqknggstkqtinktspeyirthscgsrlrgnsandtdrpeqllkTKCRRMRRKIArelfpsnshsneqcnkhsrtgmgcktqmpTGRCSDDDDESQEENndeedqiegyssendkgCMYRLTDYETPCHVGEWFKFENPPRHKMILYHGQRFRDVSHFRKAIEVFAIRDGFKLCVMENRAHAvsyecsdlrcdWKIKAERVVNGRTFIVTEFVAQHKCTRRHQQFQHRSKWISAIYLHRWKLQPNLRTVDIKDEIKATYGVVCHEAKLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWVFFIKNINNALRLDHGEGLCIMGDGDNGIDYAIEEFLPKAVYRQCCLKIFTEMVKRFPTAPVEHFFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSWALFTIPKWVKCICVTLSITDKLRNYLHQYLEMSIASRYVAIARLTAELFERrrmevwnwyrekvtptvrevikdrtidgqrfvlveengnrlkliDTTSIIFYLNMEAQSCSCGLRQKSGIPCAHACKGIQLIMGNVEEYVDNMMSVQNFCSMYVPGMMPFPEKHAWKWAACNKLLPPMIESVNTLSMKGSNESASSRARQCIennsdaatnnpqvhmvl
Low Complexity Region (SEG)
MEEDKQSGVVDRKRQTRQKNGGSTKQTINKTSPEYIRTHSCGSRLRGNSANDTDRPEQLLKTKCRRMRRKIARELFPSNSHSNEQCNKHSRTGMGCKTQMPTGRCsddddesqeenndeedqIEGYSSENDKGCMYRLTDYETPCHVGEWFKFENPPRHKMILYHGQRFRDVSHFRKAIEVFAIRDGFKLCVMENRAHAVSYECSDLRCDWKIKAERVVNGRTFIVTEFVAQHKCTRRHQQFQHRSKWISAIYLHRWKLQPNLRTVDIKDEIKATYGVVCHEAKLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWVFFIKNINNALRLDHGEGLCIMGDGDNGIDYAIEEFLPKAVYRQCCLKIFTEMVKRFPTAPVEHFFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSWALFTIPKWVKCICVTLSITDKLRNYLHQYLEMSIASRYVAIARLTAELFERRRMEVWNWYREKVTPTVREVIKDRTIDGQRFVLVEENGNRLKLIDTTSIIFYLNMEAQSCSCGLRQKSGIPCAHACKGIQLIMGNVEEYVDNMMSVQNFCSMYVPGMMPFPEKHAWKWAACNKLLPPMIESVNTLSMKGSNESASSRARQCIENNSDAATNNPQVHMVL
Disordered region (IsUnstruct)
************************************************************************************************************************************GCMYRLTDYETPCHVGEWFKFENPPRHKMILYHGQRFRDVSHFRKAIEVFAIRDGFKLCVMENRAHAVSYECSDLRCDWKIKAERVVNGRTFIVTEFVAQHKCTRRHQQFQHRSKWISAIYLHRWKLQPNLRTVDIKDEIKATYGVVCHEAKLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWVFFIKNINNALRLDHGEGLCIMGDGDNGIDYAIEEFLPKAVYRQCCLKIFTEMVKRFPTAPVEHFFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSWALFTIPKWVKCICVTLSITDKLRNYLHQYLEMSIASRYVAIARLTAELFERRRMEVWNWYREKVTPTVREVIKDRTIDGQRFVLVEENGNRLKLIDTTSIIFYLNMEAQSCSCGLRQKSGIPCAHACKGIQLIMGNVEEYVDNMMSVQNFCSMYVPGMMPFPEKHAWKWAACNKLLPPMIE***************************************
Disordered Region (DISOPRED)
*****************************************************************************************************************************************************WFKFENPPRHKMILYHGQRFRDVSHFRKAIEVFAIRDGFKLCVMENRAHAVSYECSDLRCDWKIKAERVVNGRTFIVTEFVAQHKCTRRHQQFQHRSKWISAIYLHRWKLQPNLRTVDIKDEIKATYGVVCHEAKLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWVFFIKNINNALRLDHGEGLCIMGDGDNGIDYAIEEFLPKAVYRQCCLKIFTEMVKRFPTAPVEHFFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSWALFTIPKWVKCICVTLSITDKLRNYLHQYLEMSIASRYVAIARLTAELFERRRMEVWNWYREKVTPTVREVIKDRTIDGQRFVLVEENGNRLKLIDTTSIIFYLNMEAQSCSCGLRQKSGIPCAHACKGIQLIMGNVEEYVDNMMSVQNFCSMYVPGMMPFPEKHAWKWAACNKLLP*******************************************
Disordered Region (DISEMBL)
**************************TINKTSPEYIRTHSCGSR************EQLLKTKCRRMRRKIARELFPS*************TGMGCKT***************************YSSENDKGCMYRLTDYETPCHVGEWFKFENPPRHKMILYHGQRFRDVSHFRKAIEVFAIRDGFKLCVMENRAHAVSYECSDLRCDWKIKAERVVNGRTFIVTEFVAQ************RSKWISAIYLHRWKLQPNLRTVDIKDEIKATYGVVCHEAKLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWVFFIKNINNALRLDHGEGLCIMGDGDNGIDYAIEEFLPKAVYRQCCLKIFTEMVKRFPTAPVEHFFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSWALFTIPKWVKCICVTLSITDKLRNYLHQYLEMSIASRYVAIARLTAELFERRRMEVWNWYREKVTPTVREVIKDRTIDGQRFVLVEENGNRLKLIDTTSIIFYLNMEAQSCSCGLRQKSGIPCAHACKGIQLIMGNVEEYVDNMMSVQNFCSMYVPGMMPFPEKHAWKWAACNKLLPPMIESVNTLS*************QCIENNSDAATNNPQVHMVL
Disordered Region (DISPRO)
**********************STKQTINKTSPEYIRTHSCG******************************R*****N***************************************************************TPCHVGEWFKFENPPRHKMILYHGQRFRDVSHFRKAIEVFAIRDGFKLCVMENRAHAVSYECSDLRCDWKIKAERVVNGRTFIVTEFVAQHKCTRRHQQFQHRSKWISAIYLHRWKLQPNLRTVDIKDEIKATYGVVCHEAKLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWVFFIKNINNALRLDHGEGLCIMGDGDNGIDYAIEEFLPKAVYRQCCLKIFTEMVKRFPTAPVEHFFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSWALFTIPKWVKCICVTLSITDKLRNYLHQYLEMSIASRYVAIARLTAELFERRRMEVWNWYREKVTPTVREVIKDRTIDGQRFVLVEENGNRLKLIDTTSIIFYLNMEAQSCSCGLRQKSGIPCAHACKGIQLIMGNVEEYVDNMMSVQNFCSMYVPGMMPFPEKHAWKWAACNKLLPPMIE*******************************NPQV**VL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEEDKQSGVVDRKRQTRQKNGGSTKQTINKTSPEYIRTHSCGSRLRGNSANDTDRPEQLLKTKCRRMRRKIARELFPSNSHSNEQCNKHSRTGMGCKTQMPTGRCSDDxxxxxxxxxxxxxxxxxxxxxNDKGCMYRLTDYETPCHVGEWFKFENPPRHKMILYHGQRFRDVSHFRKAIEVFAIRDGFKLCVMENRAHAVSYECSDLRCDWKIKAERVVNGRTFIVTEFVAQHKCTRRHQQFQHRSKWISAIYLHRWKLQPNLRTVDIKDEIKATYGVVCHEAKLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWVFFIKNINNALRLDHGEGLCIMGDGDNGIDYAIEEFLPKAVYRQCCLKIFTEMVKRFPTAPVEHFFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSWALFTIPKWVKCICVTLSITDKLRNYLHQYLEMSIASRYVAIARLTAELFERRRMEVWNWYREKVTPTVREVIKDRTIDGQRFVLVEENGNRLKLIDTTSIIFYLNMEAQSCSCGLRQKSGIPCAHACKGIQLIMGNVEEYVDNMMSVQNFCSMYVPGMMPFPEKHAWKWAACNKLLPPMIESVNTLSMKGSNESASSRARQCIENNSDAATNNPQVHMVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	716
225429092	583	PREDICTED: uncharacterized protein LOC10	0.687	0.843	0.239	7e-40
147780251	1076	hypothetical protein VITISV_037761 [Viti	0.675	0.449	0.242	9e-40
356565507	748	PREDICTED: uncharacterized protein LOC10	0.674	0.645	0.233	1e-39
225450448	768	PREDICTED: uncharacterized protein LOC10	0.675	0.630	0.242	2e-39
224105815	589	predicted protein [Populus trichocarpa]	0.687	0.835	0.243	9e-39
225432189	746	PREDICTED: uncharacterized protein LOC10	0.674	0.647	0.231	3e-38
147865779	1147	hypothetical protein VITISV_020810 [Viti	0.666	0.415	0.230	3e-38
449485027	844	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.674	0.572	0.235	4e-38
356521263	582	PREDICTED: uncharacterized protein LOC10	0.682	0.840	0.245	5e-38
449520056	582	PREDICTED: uncharacterized LOC101204073	0.678	0.835	0.231	6e-38

>gi|225429092|ref|XP_002269076.1| PREDICTED: uncharacterized protein LOC100253276 isoform 1 [Vitis vinifera] gi|359475510|ref|XP_003631693.1| PREDICTED: uncharacterized protein LOC100253276 isoform 2 [Vitis vinifera] gi|147838852|emb|CAN72363.1| hypothetical protein VITISV_011058 [Vitis vinifera]

 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 123/513 (23%), Positives = 236/513 (46%), Gaps = 21/513 (4%)

Query: 166 GQRFRDVSHFRKAIEVFAIRDGFKLCVMENRAHAVSYECSDLRCDWKIKAERVVNGRTFI 225
           GQ F DV  FR AI+  AI   F+L ++++       +C+   C W+I+A ++ N  TF 
Sbjct: 9   GQEFADVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCATEGCPWRIRAVKLPNAPTFT 68

Query: 226 VTEFVAQHKCTRRHQQFQHRSK--WISAIYLHRWKLQPNLRTVDIKDEIKATYGVVCHEA 283
           +      H C +  Q   H++   WI +    R +   N +  DI  +I   YG+     
Sbjct: 69  IRSLEGTHTCGKNAQNGHHQASVDWIVSFIEERLRDNINYKPKDILHDIHKQYGITIPYK 128

Query: 284 KLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEER------- 336
           +   A +R    +    E+GY +L  + +E++R N  ++  + T   +   +R       
Sbjct: 129 QAWRAKERGLAAIYGSSEEGYCLLPAYCEEIKRANPGSVAEVFTSGADNRFQRLFVSFYA 188

Query: 337 TSYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWVFFI 396
           + Y F N C  ++ + G ++ + Y   +L A + D + G+ P+AF  V  E+ +SW++F+
Sbjct: 189 SIYGFLNGCLPIVGLGGIQLKSKYLGTLLSATSFDADGGLFPLAFGVVDAENDESWMWFL 248

Query: 397 KNINNALRL--DHGEGLCIMGDGDNGIDYAIEEFLPKAVYRQCCLKIFTEMVKRFPTAPV 454
             +  AL +  ++   L  + DG  GI  A++   P + +  C   +   + K F  + +
Sbjct: 249 SELRKALEMNTENVPQLTFLSDGQKGIQDAVKRKFPTSSHAFCMRHLSESIGKEFKNSRL 308

Query: 455 EHFFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSWALFTIPKWVKCICVTLSI 514
            H  W A  +T+  +F + M  I   S E   W+ Q   S WAL    +  +   ++ +I
Sbjct: 309 VHLLWKAAYATTTIAFKEKMAEIEEVSSEAAKWIQQFPTSRWALVYF-EGTRYGHLSSNI 367

Query: 515 TDKLRNYLHQYLEMSIASRYVAI-ARLTAELFERRRMEVWNWYREKVTPTVREVIKDRTI 573
            ++   ++ +  E+ I      I ++L AE FE RR++  +W+   + P+  + + +   
Sbjct: 368 -EEFNKWILEARELPIIQVIEQIHSKLMAE-FEERRLKSNSWF-SVLAPSADKRMMEAIG 424

Query: 574 DGQRFVLVEENGNRLKLIDT--TSIIFYLNMEAQSCSCGLRQKSGIPCAHACKGIQLIMG 631
               + ++  +    +++    + I+   N+  Q CSC   Q  GIPC+HA   +     
Sbjct: 425 RASTYQVLRSDEVEFEVLSAERSDIV---NIGTQCCSCRDWQLYGIPCSHAVAALLSCRK 481

Query: 632 NVEEYVDNMMSVQNFCSMYVPGMMPFPEKHAWK 664
           +V  + +   +V ++ + Y   + P P K  W+
Sbjct: 482 DVYAFTEKCFTVASYRAAYSEEIRPIPCKIEWR 514

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147780251|emb|CAN65744.1| hypothetical protein VITISV_037761 [Vitis vinifera]

 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 124/511 (24%), Positives = 230/511 (45%), Gaps = 27/511 (5%)

Query: 166 GQRFRDVSHFRKAIEVFAIRDGFKLCVMENRAHAVSYECSDLRCDWKIKAERVVNGRTFI 225
           GQRF  V  FR+A+  +AI   F     +N +H V+ +C    C W+I A R+   +   
Sbjct: 204 GQRFSGVHEFREALRKYAIAHQFAFRYKKNDSHRVTVKCKAEGCPWRIHASRLSTTQLIC 263

Query: 226 VTEFVAQHKCTRR--HQQFQHRSKWISAIYLHRWKLQPNLRTVDIKDEIKATYGVVCHEA 283
           + +  A H C        +Q    W+++I + + K+ PN +  DI ++IK  YG+  +  
Sbjct: 264 IKKMNATHTCEGAVVTTGYQATRSWVASIIMDKLKVFPNYKPKDIVNDIKQEYGIQLNYF 323

Query: 284 KLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETK------RHEYGEERT 337
           +     + AK  L   +++ Y+ L  F +++   N  +     TK      R       +
Sbjct: 324 QAWRGKEIAKEQLQGSYKEAYSQLPFFCEKIMETNPGSFATFTTKEDSSFHRLFVSFHAS 383

Query: 338 SYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWVFFIK 397
            Y F+  CR LL +D   + + Y   +L A A DG++G+ P+AF  V  E  D+W +F+ 
Sbjct: 384 LYGFQQGCRPLLFLDSISLKSKYQGTLLAATAADGDDGVFPVAFSVVDAETDDNWHWFLL 443

Query: 398 NINNALRLDHGEGLCIMGDGDNGIDYAIEEFLPKAVYRQCCLKIFTEMVKRFPTAPVEHF 457
            + +AL       +  + D + G+  +I E   +  +   CL+  TE + +       H 
Sbjct: 444 QLKSALPT--SRPITFVADREKGLRESIAEIF-QGSFHGYCLRYLTEQLLKDLKGQFSHE 500

Query: 458 --------FWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSW--ALFTIPKWVKC 507
                   F++A  +    SF + ++ I + S E ++WL+Q++  +W  A F   ++   
Sbjct: 501 VKRLMVEDFYAAAYAPRPESFQRCLESIKSISLEAYNWLIQSEPMNWANAFFQGARYNH- 559

Query: 508 ICVTLSITDKLRNYLHQYLEMSIASRYVAIARLTAELFERRRMEVWNWYREKVTPTVREV 567
             +  +  +   ++  +  E+ I      I     ELF  RR +   W   ++TP++ E 
Sbjct: 560 --MASNFGELFYSWASEAHELPITQMVDVIRGKIMELFFTRRTDSNQWM-TRLTPSMEEK 616

Query: 568 IKDRTIDGQRFVLVEENGNRLKLIDTTSIIFYLNMEAQSCSCGLRQKSGIPCAHACKGIQ 627
           ++  T+  +   ++   GN  ++   T  I  ++++   CSC   Q +G+PC HA   I 
Sbjct: 617 LEKETVKVRPLQVLLSGGNTFEVRGDT--IEVVDIDHWDCSCKGWQLTGLPCCHAIAVIS 674

Query: 628 LIMGNVEEYVDNMMSVQNFCSMYVPGMMPFP 658
            I  +  EY     + +++   Y   + P P
Sbjct: 675 CIGQSPYEYCSRYFTTESYRLTYSESVHPIP 705

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565507|ref|XP_003550981.1| PREDICTED: uncharacterized protein LOC100809446 [Glycine max]

 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 119/510 (23%), Positives = 230/510 (45%), Gaps = 27/510 (5%)

Query: 167 QRFRDVSHFRKAIEVFAIRDGFKLCVMENRAHAVSYECSDLRCDWKIKAERVVNGRTFIV 226
           QRF   S FR+A+  ++I  GF     +N +H V+ +C    C W++ A R+   +   +
Sbjct: 186 QRFNSFSEFREALHKYSIAHGFAYKYKKNDSHRVTVKCKSQGCPWRVYASRLSTTQLICI 245

Query: 227 TEFVAQHKCTRRHQQFQHRSK--WISAIYLHRWKLQPNLRTVDIKDEIKATYGVVCHEAK 284
            +    H C     +  +R+   W+ +I   + K  PN +  DI D+IK  YG+  + ++
Sbjct: 246 KKMHCDHTCEGSAVKAGYRATRGWVGSIIKEKLKDSPNYKPKDIADDIKREYGIQLNYSQ 305

Query: 285 LLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETK------RHEYGEERTS 338
              A + A+  L   + + Y  L  F ++++  N  +     TK      R       ++
Sbjct: 306 AWRAKEIAREQLQGSYIEAYTQLPLFCEKIKETNPGSFATFTTKEDSSFHRLFVAFHAST 365

Query: 339 YAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWVFFIKN 398
             F+  CR L+ +D   +N+ Y   +L A A+DGN+GI P+AF  V  E  D+W +F++ 
Sbjct: 366 SGFQLGCRPLIFLDTTPLNSKYQGELLAATAVDGNDGIFPVAFAVVDTETEDNWRWFLQE 425

Query: 399 INNALRLDHGEGLCIMGDGDNGIDYAIEEFLPKAVYRQCCLKIFTEMVKRFPTAPVEHF- 457
           +   L     E +  + D  NG+  ++ +   K  Y   CL+   E + +       H  
Sbjct: 426 LK--LATSTSEKITFVADFQNGLKKSLSDVFEKC-YHSYCLRHLAEKLNKDLKGQFSHEA 482

Query: 458 -------FWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSW--ALFTIPKWVKCI 508
                  F++A  +    +F + ++ I   S E +DW++Q++   W  A F   ++    
Sbjct: 483 RRFMVNDFYAAAYAPKLETFERSVENIKGISPEAYDWVIQSEPEHWANAFFNGARYN--- 539

Query: 509 CVTLSITDKLRNYLHQYLEMSIASRYVAIARLTAELFERRRMEVWNWYREKVTPTVREVI 568
            ++ +   +  +++ +  E+ I     A+     E    RR+E   W   K+TP+  E++
Sbjct: 540 LLSSNFGQQFYSWVSEAHELPITQMIDALRGKMMETIYTRRVESNQWM-TKLTPSKEELL 598

Query: 569 KDRTIDGQRFVLVEENGNRLKLIDTTSIIFYLNMEAQSCSCGLRQKSGIPCAHACKGIQL 628
           +  T+      ++   G+  ++   +  I  ++++   CSC   Q +G+PC HA    + 
Sbjct: 599 QKETLVAPSLQVLFSQGSTFEVRGESVDI--VDIDNWDCSCKGWQLTGVPCCHAIAVFEC 656

Query: 629 IMGNVEEYVDNMMSVQNFCSMYVPGMMPFP 658
           +  +  +Y     +V+N+   Y   + P P
Sbjct: 657 VGRSPYDYCSRYFTVENYRLTYAESIHPVP 686

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450448|ref|XP_002276424.1| PREDICTED: uncharacterized protein LOC100251030 [Vitis vinifera]

 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 124/511 (24%), Positives = 230/511 (45%), Gaps = 27/511 (5%)

Query: 166 GQRFRDVSHFRKAIEVFAIRDGFKLCVMENRAHAVSYECSDLRCDWKIKAERVVNGRTFI 225
           GQRF  V  FR+A+  +AI   F     +N +H V+ +C    C W+I A R+   +   
Sbjct: 204 GQRFSGVHEFREALRKYAIAHQFAFRYKKNDSHRVTVKCKAEGCPWRIHASRLSTTQLIC 263

Query: 226 VTEFVAQHKC--TRRHQQFQHRSKWISAIYLHRWKLQPNLRTVDIKDEIKATYGVVCHEA 283
           + +  A H C        +Q    W+++I + + K+ PN +  DI ++IK  YG+  +  
Sbjct: 264 IKKMNATHTCEGAVVTTGYQATRSWVASIIMDKLKVFPNYKPKDIVNDIKQEYGIQLNYF 323

Query: 284 KLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETK------RHEYGEERT 337
           +     + AK  L   +++ Y+ L  F +++   N  +     TK      R       +
Sbjct: 324 QAWRGKEIAKEQLQGSYKEAYSQLPFFCEKIMETNPGSFATFTTKEDSSFHRLFVSFHAS 383

Query: 338 SYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWVFFIK 397
            Y F+  CR LL +D   + + Y   +L A A DG++G+ P+AF  V  E  D+W +F+ 
Sbjct: 384 LYGFQQGCRPLLFLDSISLKSKYQGTLLAATAADGDDGVFPVAFSVVDAETDDNWHWFLL 443

Query: 398 NINNALRLDHGEGLCIMGDGDNGIDYAIEEFLPKAVYRQCCLKIFTEMVKRFPTAPVEHF 457
            + +AL       +  + D + G+  +I E   +  +   CL+  TE + +       H 
Sbjct: 444 QLKSALPT--SRPITFVADREKGLRESIAEIF-QGSFHGYCLRYLTEQLLKDLKGQFSHE 500

Query: 458 --------FWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSW--ALFTIPKWVKC 507
                   F++A  +    SF + ++ I + S E ++WL+Q++  +W  A F   ++   
Sbjct: 501 VKRLMVEDFYAAAYAPRPESFQRCLETIKSISLEAYNWLIQSEPMNWANAFFQSARYNH- 559

Query: 508 ICVTLSITDKLRNYLHQYLEMSIASRYVAIARLTAELFERRRMEVWNWYREKVTPTVREV 567
             +  +  +   ++  +  E+ I      I     ELF  RR +   W   ++TP++ E 
Sbjct: 560 --MASNFGELFYSWASEAHELPITQMVDVIRGKIMELFFTRRTDSNQWMT-RLTPSMEEK 616

Query: 568 IKDRTIDGQRFVLVEENGNRLKLIDTTSIIFYLNMEAQSCSCGLRQKSGIPCAHACKGIQ 627
           ++  T+  +   ++   GN  ++   T  I  ++++   CSC   Q +G+PC HA   I 
Sbjct: 617 LEKETVKVRPLQVLLSGGNTFEVRGDT--IEVVDIDHWDCSCKGWQLTGLPCCHAIAVIS 674

Query: 628 LIMGNVEEYVDNMMSVQNFCSMYVPGMMPFP 658
            I  +  EY     + +++   Y   + P P
Sbjct: 675 CIGQSPYEYCSRYFTTESYRLTYSESVHPIP 705

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105815|ref|XP_002313941.1| predicted protein [Populus trichocarpa] gi|222850349|gb|EEE87896.1| predicted protein [Populus trichocarpa]

 Score =  168 bits (426), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 125/513 (24%), Positives = 232/513 (45%), Gaps = 21/513 (4%)

Query: 166 GQRFRDVSHFRKAIEVFAIRDGFKLCVMENRAHAVSYECSDLRCDWKIKAERVVNGRTFI 225
           GQ F DV  FR AI+  AI   F+L ++++       +C+   C W+I+A ++ N  TF 
Sbjct: 9   GQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCASEGCPWRIRAVKLPNVPTFT 68

Query: 226 VTEFVAQHKCTRRHQQFQHRSK--WISAIYLHRWKLQPNLRTVDIKDEIKATYGVVCHEA 283
           V      H C R  Q   H++   WI +    R +   N +  DI  +I   YG+     
Sbjct: 69  VRSLEGTHTCGRNAQNGHHQASVDWIVSFIEERLRNNTNYKPKDILHDIHQQYGITIPYK 128

Query: 284 KLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNI--VLLETKRHEYGEERTSY-- 339
           +   A +R    +    E+GY +L  + ++++R N  ++  V      + +     S+  
Sbjct: 129 QAWRAKERGLAAIYGSSEEGYCLLPSYCEQIKRTNPGSVAEVFTTGADNRFHRLFISFFG 188

Query: 340 ---AFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWVFFI 396
               F N C  ++ + G ++ + Y   +L A + D + G+ P+AF  V VE+ +SW++F+
Sbjct: 189 SINGFLNGCLPIVGLGGIQLKSKYLGTLLSATSFDADGGLFPLAFGVVDVENDESWMWFL 248

Query: 397 KNINNALRL--DHGEGLCIMGDGDNGIDYAIEEFLPKAVYRQCCLKIFTEMVKRFPTAPV 454
             +  AL +  ++   L  + DG  GI  A+    P + +  C   +   + K F  + +
Sbjct: 249 SELQKALEMNTENMPRLTFLCDGQKGIVDAVRRKFPSSSHAFCLRHLSESIGKEFKNSRL 308

Query: 455 EHFFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSWALFTIPKWVKCICVTLSI 514
            H  W A  +T+   F + M  I   S     WL Q   S WAL    +  +   ++ +I
Sbjct: 309 VHLLWKAAYATTTIHFKEKMLEISEVSSAAAKWLQQFPPSRWALVYF-EGTRYGHLSSNI 367

Query: 515 TDKLRNYLHQYLEMSIASRYVAI-ARLTAELFERRRMEVWNWYREKVTPTVREVIKDRTI 573
            D+   ++ +  E+ I      I ++L AE F+ R+M+  +W+   + P+  + + +   
Sbjct: 368 -DEFNRWILEARELPIIQVIERIHSKLMAE-FQDRQMKSNSWF-SVLAPSAEKRMIEAIN 424

Query: 574 DGQRFVLVEENGNRLKLI--DTTSIIFYLNMEAQSCSCGLRQKSGIPCAHACKGIQLIMG 631
               + ++  +    +++  D + I+   N+   SCSC   Q  GIPC+HA   +     
Sbjct: 425 HASAYQVLRSDEVEFEVLSADRSDIV---NIGTHSCSCRGWQLYGIPCSHAVAALVSCRK 481

Query: 632 NVEEYVDNMMSVQNFCSMYVPGMMPFPEKHAWK 664
           +V  + +   +V  +   Y   + P PE+  W+
Sbjct: 482 DVYAFTEKCFTVAGYREAYAETIHPIPERIEWR 514

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432189|ref|XP_002268620.1| PREDICTED: uncharacterized protein LOC100247698 [Vitis vinifera]

 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 118/510 (23%), Positives = 230/510 (45%), Gaps = 27/510 (5%)

Query: 167 QRFRDVSHFRKAIEVFAIRDGFKLCVMENRAHAVSYECSDLRCDWKIKAERVVNGRTFIV 226
           QRF   + FR+A+  ++I  GF     +N +H V+ +C    C W+I A R+   +   +
Sbjct: 184 QRFNSFNEFREALHKYSIAHGFAYKYKKNDSHRVTVKCKSQGCPWRIYASRLSTTQLICI 243

Query: 227 TEFVAQHKCTRRHQQFQHRSK--WISAIYLHRWKLQPNLRTVDIKDEIKATYGVVCHEAK 284
            +    H C     +  +R+   W+  I   + K+ PN +  DI D+IK  YG+  + ++
Sbjct: 244 KKMHTTHTCEGAIVKAGYRATRGWVGTIIKEKLKVSPNYKPKDIADDIKREYGIQLNYSQ 303

Query: 285 LLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKR-HEYGEERTSY---- 339
              A + A+  L   +++ Y+ L  F ++++  N  +    ETK    +     S+    
Sbjct: 304 AWRAKEIAREQLQGSYKEAYSQLPFFCEKIKETNPGSFATFETKEDSSFHRLFISFHAAI 363

Query: 340 -AFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWVFFIKN 398
             F+  CR LL +D   +N+ Y  ++L A A DG++G+ P+AF  V  E  D+W +F+  
Sbjct: 364 SGFQQGCRPLLFLDSTPLNSKYQGMLLTATAADGDDGVFPVAFAVVDAETDDNWSWFLLE 423

Query: 399 INNALRLDHGEGLCIMGDGDNGIDYAIEEFLPKAVYRQCCLKIFTEMVKRFPTAPVEHF- 457
           + +A+       +  + D   G+  ++ E      Y   CL+  TE + +       H  
Sbjct: 424 LKSAVST--ARPITFVADFQKGLKKSLAEIFDNG-YHSYCLRYLTEKLNKDLKGQFSHEA 480

Query: 458 -------FWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSW--ALFTIPKWVKCI 508
                  F++A  ++   +F +  + I   S E ++W++Q++   W  A F   ++    
Sbjct: 481 RRFMINDFYAAAYASRLETFQRCTENIKGISPEAYNWVIQSEPDHWSNAFFGGARYSH-- 538

Query: 509 CVTLSITDKLRNYLHQYLEMSIASRYVAIARLTAELFERRRMEVWNWYREKVTPTVREVI 568
            +  +      N++ +  ++ I      +     EL  +RR++   W   K+TP+  E +
Sbjct: 539 -MASNFGQLFYNWVSEANDLPITQMVDVLRGKMMELIYKRRVDSSQWI-TKLTPSKEEKL 596

Query: 569 KDRTIDGQRFVLVEENGNRLKLIDTTSIIFYLNMEAQSCSCGLRQKSGIPCAHACKGIQL 628
              T   +   ++  +G+  ++   +  I  ++++   CSC   Q SG+PC HA    + 
Sbjct: 597 LKDTSTARSLQVLLSHGSTFEVRGES--IDIVDIDHWDCSCKDWQLSGLPCCHAIAVFEW 654

Query: 629 IMGNVEEYVDNMMSVQNFCSMYVPGMMPFP 658
           I  N  +Y     +V+++   Y   + P P
Sbjct: 655 IGRNPYDYCSRYFTVESYRLTYAESIHPVP 684

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865779|emb|CAN81145.1| hypothetical protein VITISV_020810 [Vitis vinifera]

 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 119/516 (23%), Positives = 231/516 (44%), Gaps = 39/516 (7%)

Query: 167 QRFRDVSHFRKAIEVFAIRDGFKLCVMENRAHAVSYECSDLRCDWKIKAERVVNGRTFIV 226
           QRF   + FR+A+  ++I  GF     +N +H V+ +C    C W+I A R+   +   +
Sbjct: 202 QRFNSFNEFREALHKYSIAHGFAYKYKKNDSHRVTVKCKSQGCPWRIYASRLSTTQLICI 261

Query: 227 TEFVAQHKCTRRHQQFQHRSK--WISAIYLHRWKLQPNLRTVDIKDEIKATYGVVCHEAK 284
            +    H C     +  +R+   W+  I   + K+ PN +  DI D+IK  YG+  + ++
Sbjct: 262 KKMHTTHTCEGAIVKAGYRATRGWVGTIIKEKLKVSPNYKPKDIADDIKREYGIQLNYSQ 321

Query: 285 LLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEERTSY----- 339
              A + A+  L   +++ Y+ L  F ++++  N  +    ETK      E +S+     
Sbjct: 322 AWRAKEIAREQLQGSYKEAYSQLPFFCEKIKETNPGSFATFETK------EDSSFHRLFI 375

Query: 340 -------AFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSW 392
                   F+  CR LL +D   +N+ Y  ++L A A DG++G+ P+AF  V  E  D+W
Sbjct: 376 SFHAAISGFQQGCRPLLFLDSTPLNSKYQGMLLTATAADGDDGVFPVAFAVVDAETDDNW 435

Query: 393 VFFIKNINNALRLDHGEGLCIMGDGDNGIDYAIEEFLPKAVYRQCCLKIFTEMVKRFPTA 452
            +F+  + +A+       +  + D   G+  ++ E      Y   CL+  TE + +    
Sbjct: 436 SWFLLELKSAVST--ARPITFVADFQKGLKKSLAEIFDNG-YHSYCLRYLTEKLNKDLKG 492

Query: 453 PVEHF--------FWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSW--ALFTIP 502
              H         F++A  ++   +F +  + I   S E ++W++Q++   W  A F   
Sbjct: 493 QFSHEARRFMINDFYAAAYASRLETFQRCTENIKGISPEAYNWVIQSEPDHWSNAFFGGA 552

Query: 503 KWVKCICVTLSITDKLRNYLHQYLEMSIASRYVAIARLTAELFERRRMEVWNWYREKVTP 562
           ++     +  +      N++ +  ++ I      +     EL  +RR++   W   K+TP
Sbjct: 553 RYSH---MASNFGQLFYNWVSEANDLPITQMVDVLRGKMMELIYKRRVDSSQWI-TKLTP 608

Query: 563 TVREVIKDRTIDGQRFVLVEENGNRLKLIDTTSIIFYLNMEAQSCSCGLRQKSGIPCAHA 622
           +  E +   T   +   ++  +G+  ++   +  I  ++++   CSC   Q SG+PC HA
Sbjct: 609 SKEEKLLKDTSTARSLQVLLSHGSTFEVRGES--IDIVDIDHWDCSCKDWQLSGLPCCHA 666

Query: 623 CKGIQLIMGNVEEYVDNMMSVQNFCSMYVPGMMPFP 658
               + I  N  +Y     +V+++   Y   + P P
Sbjct: 667 IAVFEWIGRNPYDYCSRYFTVESYRLTYAESIHPVP 702

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449485027|ref|XP_004157051.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101228329 [Cucumis sativus]

 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 120/510 (23%), Positives = 228/510 (44%), Gaps = 27/510 (5%)

Query: 167 QRFRDVSHFRKAIEVFAIRDGFKLCVMENRAHAVSYECSDLRCDWKIKAERVVNGRTFIV 226
           QRF   S FR+A+  ++I  GF     +N +H V+ +C    C W+I A R+   +   +
Sbjct: 282 QRFNSFSEFREALHKYSIAHGFAYRYKKNDSHRVTVKCKYQGCPWRIYASRLSTTQLICI 341

Query: 227 TEFVAQHKCTRRHQQFQHRSK--WISAIYLHRWKLQPNLRTVDIKDEIKATYGVVCHEAK 284
            +    H C     +  +R+   W+  I   + K+ PN +  DI D+IK  YG+  + ++
Sbjct: 342 KKMNTHHSCEGAAAKAGYRATRGWVGNIIKEKLKVSPNYKPKDIADDIKREYGIQLNYSQ 401

Query: 285 LLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETK------RHEYGEERTS 338
              A + A+  L   +++ Y  L  F ++++  N  ++    TK      R       + 
Sbjct: 402 AWRAKEIAREQLQGSYKEAYNQLPYFCEKIKETNPGSVASFTTKDDSSFHRLFVSFHASI 461

Query: 339 YAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWVFFIKN 398
             F+  CR LL +D   +N+ Y    L A A+DG + I P AF  V  E  ++W +F+  
Sbjct: 462 SGFQQGCRPLLFLDSTPLNSKYQGFFLXATAVDGEDAIFPAAFAVVDAETEENWHWFLLE 521

Query: 399 INNALRLDHGEGLCIMGDGDNGIDYAIEEFLPKAVYRQCCLKIFTEMVKRFPTAPVEHF- 457
           + +A++    E +  + D  NG++ ++ E   K+ Y   CL+   E +         H  
Sbjct: 522 LKSAVK--RSEQITFVADFQNGLNKSLGEIFDKS-YHSYCLRHLAEKLNNDLKGQFSHEA 578

Query: 458 -------FWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSW--ALFTIPKWVKCI 508
                  F++A  +T    F +  + I   S + ++W++Q++   W  A F   ++    
Sbjct: 579 RRFMINDFYAAALATKLEDFQRCAESIKGISPDAYNWIIQSEPEHWANAFFGGARYNH-- 636

Query: 509 CVTLSITDKLRNYLHQYLEMSIASRYVAIARLTAELFERRRMEVWNWYREKVTPTVREVI 568
            +T +   +  + + +  E+ I      +     E    RR+E   W   K+TPT  E +
Sbjct: 637 -ITSNFGQQFYSSISEAHELPITQMIDVLRGKMMETIYSRRVESDQWVT-KLTPTNEEKL 694

Query: 569 KDRTIDGQRFVLVEENGNRLKLIDTTSIIFYLNMEAQSCSCGLRQKSGIPCAHACKGIQL 628
           +      + F +   +GN  ++   +  ++ ++++   CSC   Q +G+PC HA   I+ 
Sbjct: 695 QKEISIARSFQVSLSHGNIFEVRGES--VYSVDVDNWDCSCKAWQLTGLPCCHAIAVIEC 752

Query: 629 IMGNVEEYVDNMMSVQNFCSMYVPGMMPFP 658
           I  +  +Y     +V+++   Y   + P P
Sbjct: 753 IGRSPYDYCPRYFTVESYRLTYAESIHPIP 782

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521263|ref|XP_003529276.1| PREDICTED: uncharacterized protein LOC100800865 [Glycine max]

 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 126/514 (24%), Positives = 230/514 (44%), Gaps = 25/514 (4%)

Query: 166 GQRFRDVSHFRKAIEVFAIRDGFKLCVMENRAHAVSYECSDLRCDWKIKAERVVNGRTFI 225
           GQ F DV  FR AI+  AI   F+L  +++       +C+   C W+I+A ++ N  TF 
Sbjct: 9   GQEFPDVKAFRNAIKEAAIAQHFELRTIKSDLIRYFAKCASDGCPWRIRAVKLPNAPTFT 68

Query: 226 VTEFVAQHKCTRRHQQFQHRSK--WISAIYLHRWKLQPNLRTVDIKDEIKATYGVVCHEA 283
           +      H C R      H++   WI +    R +   N +  DI  +I   YG+     
Sbjct: 69  IRSIDGTHTCGRNANNGHHQASVDWIVSFIEERLRDNINYKPKDILHDIHKQYGITIPYK 128

Query: 284 KLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEER---TSYA 340
           +   A +R    +    E+GY +L  + +++++ N  ++  + T   +   +R   + YA
Sbjct: 129 QAWRAKERGLAAIYGSSEEGYYLLPSYCEQIKKTNPGSVAEVFTTGADNRFQRLFVSFYA 188

Query: 341 ----FKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWVFFI 396
               F N C  ++ + G ++ + Y S +L A + D + G+ P+AF  V VE+ DSW +F+
Sbjct: 189 SITGFVNGCLPIVGLGGIQLKSKYLSTLLSATSFDADGGLFPLAFGVVDVENDDSWTWFL 248

Query: 397 KNINNALRLDHG--EGLCIMGDGDNGIDYAIEEFLPKAVYRQCCLKIFTEMVKRFPTAPV 454
             ++  L ++         + DG N I  A+    P + +  C   +   + K F  + +
Sbjct: 249 SELHKVLEVNTECMPEFIFLSDGLNSITDAVRRKFPSSSHAFCMRHLTESIGKEFKNSRL 308

Query: 455 EHFFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSWALFTIPKWVKCICVTLSI 514
            H  W A  ST+  +F + M  I   S E   WL Q   S WAL    K  +   ++ +I
Sbjct: 309 VHLLWKASYSTTTIAFKEKMGEIEEVSPEAAKWLQQFHPSQWALVHF-KGTRFGHLSSNI 367

Query: 515 TDKLRNYLHQYLEMSIASRYVAIARLTAEL---FERRRMEVWNWYREKVTPTVREVIKDR 571
            ++   ++    E+ I      I R+ ++L   F+ RR++  +W    + P+  +++ + 
Sbjct: 368 -EEFNKWILDARELPIIQ---VIERIHSKLKTEFDDRRLKSSSWC-SVLAPSAEKLMTEA 422

Query: 572 TIDGQRFVLVEENGNRLKLI--DTTSIIFYLNMEAQSCSCGLRQKSGIPCAHACKGIQLI 629
                   ++  N    +++  D + I+   N+ + SCSC   Q +GIPC+HA   +   
Sbjct: 423 INRASTHQVLRSNEVEFEVLSADRSDIV---NIGSHSCSCRDWQLNGIPCSHAAAALISC 479

Query: 630 MGNVEEYVDNMMSVQNFCSMYVPGMMPFPEKHAW 663
             +V  +     +  +F   Y   + P P K  W
Sbjct: 480 RKDVYAFSQKCFTAASFRDTYAETIHPIPGKLEW 513

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520056|ref|XP_004167050.1| PREDICTED: uncharacterized LOC101204073 [Cucumis sativus]

 Score =  166 bits (419), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 120/518 (23%), Positives = 230/518 (44%), Gaps = 32/518 (6%)

Query: 166 GQRFRDVSHFRKAIEVFAIRDGFKLCVMENRAHAVSYECSDLRCDWKIKAERVVNGRTFI 225
           GQ F DV  FR AI+  AI   F+L ++++       +C++  C W+I+A ++ N   F 
Sbjct: 9   GQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCAEEGCPWRIRAVKLPNSPIFT 68

Query: 226 VTEFVAQHKCTRRHQQFQHRSK--WISAIYLHRWKLQPNLRTVDIKDEIKATYGVVCHEA 283
           +      H C +  Q   H++   WI +    R +   N +  DI  +I   YG+     
Sbjct: 69  IRSLQGTHTCGQNAQNGHHQASIDWIVSFIEERLRNNINYKPKDILHDIHKQYGITIPYK 128

Query: 284 KLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEER------- 336
           +   A +R    +    E+GY +L  + +++++ N  ++  + T   +   +R       
Sbjct: 129 QAWRAKERGLATIFGSSEEGYGLLPSYCEQIKKANPGSVAEVFTTGSDNHFQRLFVSFYA 188

Query: 337 TSYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWVFFI 396
           + Y F N C  ++ + G ++ + Y   +L A + D + G+ P+AF  V  E+ +SW++F+
Sbjct: 189 SIYGFLNGCFPVIGLGGIELKSKYLGTLLSATSYDADGGMFPVAFGVVDAENEESWLWFL 248

Query: 397 KNINNALRLDHGEG--LCIMGDGDNGIDYAIEEFLPKAVYRQCCLKIFTEMVKRFPTAPV 454
             ++NAL+++      L  + DG NGI  A+    P + +  C   +   + K F  + +
Sbjct: 249 SELHNALKMNAWNKFHLTFLSDGQNGILDALRRKFPNSSHALCMRYLSENIGKEFKNSRL 308

Query: 455 EHFFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSWALFTIPKWVKCICVTLSI 514
               W A  + +  +F + M  I   S E   W+ Q     WAL         +    + 
Sbjct: 309 VSLVWKAAYAKTTIAFKERMSDIEEISPEAAKWIQQFP-PHWAL---------VYFEGTR 358

Query: 515 TDKLRNYLHQYLEMSIASRYVAI--------ARLTAELFERRRMEVWNWYREKVTPTVRE 566
              L + L ++ +  + +R + I        ++L AE FE RR    +W+   +TP+  +
Sbjct: 359 YGHLSSNLEEFTKWILDARELPIIQVIERIHSKLMAE-FEERRARSTSWF-SFLTPSAEK 416

Query: 567 VIKDRTIDGQRFVLVEENGNRLKLIDTTSIIFYLNMEAQSCSCGLRQKSGIPCAHACKGI 626
            I +       + +++ +    +++      + +N+  + C C   Q  GIPC+HA   I
Sbjct: 417 RIVEAIKLASSYQVLQSDEVEFEVLSADR-SYIVNIGKRCCLCRDWQLYGIPCSHAVAAI 475

Query: 627 QLIMGNVEEYVDNMMSVQNFCSMYVPGMMPFPEKHAWK 664
                +V  +++   +V  +   Y   + P P K  WK
Sbjct: 476 ASCRKDVHAFMEKCFTVSGYREAYEKSVHPIPRKLEWK 513

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	716
TAIR|locus:2014230	719	AT1G64260 "AT1G64260" [Arabido	0.715	0.712	0.202	1.4e-20
TAIR|locus:1006230722	750	AT1G64255 [Arabidopsis thalian	0.455	0.434	0.210	4.4e-16
TAIR|locus:2197122	785	AT1G49920 "AT1G49920" [Arabido	0.456	0.416	0.244	1.1e-12

TAIR|locus:2014230 AT1G64260 "AT1G64260" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 1.4e-20, P = 1.4e-20
 Identities = 111/548 (20%), Positives = 217/548 (39%)

Query:   159 HKMILYHGQRFRDVSHFRKAIEVFAIRDGFKLCVMENRAHAVSYECSDLRCDWKIKAERV 218
             H M L  G  F+D    +KA++ + IR      V E      ++EC   +C W ++A R+
Sbjct:   183 HDMHL--GLCFKDRDELKKAVDWWCIRRRRNCIVRETEKEMYTFECVRWKCKWSLRAARM 240

Query:   219 VNGRTFIVTEFVAQHKCTRRHQQFQHRSKWISAIYLHRW-KLQPNLRTVDIKDEIKATYG 277
                    +T++   H C+  +      S++ +A  + R  ++QP L   ++K   K   G
Sbjct:   241 EEHGLVEITKYTGPHTCSHEYPN-DFESEF-AADEIERVVRIQPTLSIAELKKWWKEKTG 298

Query:   278 VVCHEAKLLCAAKRA-KHILGMDHEDGYAILNQFKDEMERINSRNIVLLET--KRHEYGE 334
                  +K+        K + G D +  + ++ +        N   +          ++  
Sbjct:   299 YELQTSKMRDGKLEVIKRVFG-DEDQSFRVMPKLISAFHSSNGLLVDWQYDLFPNPDFAS 357

Query:   335 ER-TSYAFKN------HCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVE 387
              R   ++F        HCR L+ VD   +N  Y   +++A+ +D  N   P+AF      
Sbjct:   358 FRGVFWSFSQSIEGFQHCRPLIVVDTKSLNGKYQLKLMIASGVDAANKFFPLAFAVTKEV 417

Query:   388 DLDSWVFFIKNINNALRLDHGEGLCIMGDGDNGIDYAIEE--FL---PKAVYRQCCLKIF 442
               DSW +F   I    ++   + LC++      I   + E   L   P A ++ C   + 
Sbjct:   418 STDSWRWFFTKIRE--KVTQRKDLCLISSPLRDIVAVVNEPGSLWQEPWAHHKFCLNHLR 475

Query:   443 TEMVKRFPTAPVEHFFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSWALFTIP 502
             ++ +  F    +E     A  +     F+ YM+ I  ++ E   WL Q     WAL    
Sbjct:   476 SQFLGVFRDYNLESLVEQAGSTNQKEEFDSYMNDIKEKNPEAWKWLDQIPRHKWAL-AHD 534

Query:   503 KWVKCICVTL---SITDKLRNYLHQYLEMSIASRYVAIARLTAELFERRRMEVWNWYREK 559
               ++   + +   ++    R +   Y  +++    + +       F++    +++     
Sbjct:   535 SGLRYGIIEIDREALFAVCRGF--PYCTVAMTGGVMLMFDELRSSFDKSLSSIYSSLNRG 592

Query:   560 V--TPTVREVIKDRTIDGQRFVLVEENGNRLKLIDTTSIIFYL-NMEAQSCSCGLRQKSG 616
             V  T    + +++   D   +V+ +   +  K+ +++    ++  +   +C+C   Q   
Sbjct:   593 VVYTEPFMDKLEEFMTDSIPYVITQLERDSFKVSESSEKEEWIVQLNVSTCTCRKFQSYK 652

Query:   617 IPCAHACKGIQLIMGNVEEYVDNMMSVQNFCSMYVPGMMPFPEKHAWKWAACN--KLLPP 674
              PC HA    + +  N  +YVD   +V+ +C  Y     P P+  AW    C    L PP
Sbjct:   653 FPCLHALAVFEKLKINPLQYVDECYTVEQYCKTYAATFSPVPDVAAWP-EDCRVPTLFPP 711

Query:   675 MIE-SVNT 681
               + S NT
Sbjct:   712 SQQLSPNT 719

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:1006230722 AT1G64255 [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 4.4e-16, Sum P(2) = 4.4e-16
 Identities = 74/351 (21%), Positives = 139/351 (39%)

Query:   166 GQRFRDVSHFRKAIEVFAIRDGFKLCVMENRAHAVSYECSDLRCDWKIKAERVVNGRTFI 225
             G  F+D    +KA++  +++   K  V E       +EC   +C W + A R+       
Sbjct:   195 GLCFKDGDELKKAVDWCSLKAQQKCVVRETAKDEYIFECIRWKCKWSLGAARMKKHGLVE 254

Query:   226 VTEFVAQHKCTRRHQQFQHRSKWISAIYLHRWKLQPNLRTVDIKDEIKATYGVVCHEAKL 285
             + ++   H C     +   +S++ +       +  P     ++K   K   G     + +
Sbjct:   255 IIKYTGPHTCHPIVPE-DFKSEFETDEIERAVRYMPTQTISELKKWWKKKIGYELETSDV 313

Query:   286 LCAAKRA-KHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEERTS------ 338
               A ++A K + G D +  +     F   M  + S N +L++ K   +     +      
Sbjct:   314 RLAKEKAIKRVFG-DWDQSF---EDFPKLMSALCSSNGLLVDWKYDLFPNPNFASFCGVF 369

Query:   339 YAFKN------HCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSW 392
             +AF        HCR L+ VD   +N  Y   +++A+ +D  N   P+AF        D W
Sbjct:   370 WAFPQSIEGFQHCRPLIVVDTKNLNCEYQLKLMIASGVDAANKYFPLAFAVTKEVSTDIW 429

Query:   393 VFFIKNINNALRLDHGEGLCIMGDGDNGIDYAIEEF-----LPKAVYRQCCLKIFTEMVK 447
              +F+  I    ++   +GLC++      I   + E       P A +R      +++  +
Sbjct:   430 RWFLTGIRE--KVTQRKGLCLISSPHPDIIAVVNESGSQWQEPWAYHRFSLNHFYSQFSR 487

Query:   448 RFPTAPVEHFFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSWAL 498
              FP+  +      A  ++    F  YM+ I  ++ E   WL Q   + WAL
Sbjct:   488 VFPSFCLGARIRRAGSTSQKDEFVSYMNDIKEKNPEARKWLDQFPQNRWAL 538

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2197122 AT1G49920 "AT1G49920" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 1.1e-12, P = 1.1e-12
 Identities = 88/360 (24%), Positives = 142/360 (39%)

Query:   166 GQRFRDVSHFRKAIEVFAIRDGFKLCVMENRAHAVSYECSDLRCDWKIKAERVVNGRTFI 225
             G  F+D++  +KA++  +I+   K  + E        EC    C W I A R      F 
Sbjct:   183 GLCFKDLAEMKKAVDWCSIKRRQKCLLRETEKDVYVVECERWHCKWSICASRREEDGLFE 242

Query:   226 VTEFVAQHKCTRRH-QQFQHRSKWISAIYLHRWKLQPNLRTVDIKDEIKATYG---VV-- 279
             +TE    H C   H   F           + R +   +   +D   E K  +    VV  
Sbjct:   243 ITECSGPHDCYPEHLNDFDAECIPFQIERVVRVQPTLSTAELDKWWEKKFGFALDQVVEH 302

Query:   280 CHEAKLLCAAKRA-KHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHE--YGEER 336
             C E  +  A  +A K   G D +  + ++ +    M  ++S N +L++ +     +  E 
Sbjct:   303 CSEGLVEDAKVKAIKRFFG-DWDQSFRLIPKL---MSVLHSSNGLLVDWQYDSLTHDPEH 358

Query:   337 TSY-----AFKN------HCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVH 385
              S+     AF        HCR L+ VD   +   Y   +++A+A D  N   P+AF    
Sbjct:   359 ASFRGLFWAFSQSIQGFQHCRPLIVVDTKNLGGKYKMKLMIASAFDATNQYFPLAFAVTK 418

Query:   386 VEDLDSWVFFIKNINNALRLDHGEGLCIMGDGDNGIDYAIEE-----FLPKAVYRQCCLK 440
                +DSW +F+  I    ++   +G+C++   D  I   I E       P A +R C   
Sbjct:   419 EVSVDSWRWFLTRIRE--KVTQRQGICLISSPDPDILAVINEPGSQWKEPWAYHRFCLYH 476

Query:   441 IFTEMVKRFPTAPVE-HFFWSACRSTSATS-FNKYMDLIHNESEECHDWLLQTDWSSWAL 498
             + +++    P      HF      S+S    F+ YM  I   + E   WL Q     WAL
Sbjct:   477 LCSKLCSVSPGFDYNMHFLVDEAGSSSQKEEFDSYMKEIKERNPEAWKWLDQFPPHQWAL 536

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	716
pfam10551	88	pfam10551, MULE, MULE transposase domain	2e-08
pfam03108	67	pfam03108, DBD_Tnp_Mut, MuDR family transposase	2e-06

>gnl|CDD|220806 pfam10551, MULE, MULE transposase domain

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 361 NSVMLVAAALDGNNGILPIAFCEVHVEDLDSWVFFIKNINNALRLDHGEGLCIMGDGDNG 420
            +    A  +D +    P+AF  V  E  +SW +F++ +  AL       L I+ DGD G
Sbjct: 5   TNKYKGAVGVDHHGQGFPLAFALVSDESEESWTWFLEGLKKALGGRPP--LTIISDGDKG 62

Query: 421 IDYAIEEFLPKAVYRQC 437
           +  AI+E  P A +R C
Sbjct: 63  LKKAIKEVFPNARHRLC 79

This domain was identified by Babu and colleagues. Length = 88

>gnl|CDD|190526 pfam03108, DBD_Tnp_Mut, MuDR family transposase

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 18/64 (28%), Positives = 35/64 (54%)

Query: 163 LYHGQRFRDVSHFRKAIEVFAIRDGFKLCVMENRAHAVSYECSDLRCDWKIKAERVVNGR 222
           L  GQ F+    F+KA+  +AI++ F+  V ++       +C D  C W+++A ++ +  
Sbjct: 4   LEVGQVFKSKEEFKKAVRKYAIKNRFEFKVKKSDKTRYRAKCKDEGCPWRVRASKLKDSD 63

Query: 223 TFIV 226
           TF +
Sbjct: 64  TFQI 67

This region is found in plant proteins that are presumed to be the transposases for Mutator transposable elements. These transposons contain two ORFs. The molecular function of this region is unknown. Length = 67

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	716
PLN03097	846	FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis	100.0
PF10551	93	MULE: MULE transposase domain; InterPro: IPR018289	99.84
PF00872	381	Transposase_mut: Transposase, Mutator family; Inte	99.8
PF03108	67	DBD_Tnp_Mut: MuDR family transposase; InterPro: IP	99.66
COG3328	379	Transposase and inactivated derivatives [DNA repli	99.44
smart00575	28	ZnF_PMZ plant mutator transposase zinc finger.	98.87
PF08731	111	AFT: Transcription factor AFT; InterPro: IPR014842	98.67
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	98.41
PF04434	40	SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc f	98.1
PF13610	140	DDE_Tnp_IS240: DDE domain	96.61
PF06782	470	UPF0236: Uncharacterised protein family (UPF0236);	94.87
PHA02517	277	putative transposase OrfB; Reviewed	93.16
PRK14702	262	insertion element IS2 transposase InsD; Provisiona	92.19
PF01610	249	DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Aut	91.84
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	91.27
PRK09409	301	IS2 transposase TnpB; Reviewed	91.19
PF04684	496	BAF1_ABF1: BAF1 / ABF1 chromatin reorganising fact	91.13
COG3316	215	Transposase and inactivated derivatives [DNA repli	89.17
PF13565	77	HTH_32: Homeodomain-like domain	84.53
PF15288	40	zf-CCHC_6: Zinc knuckle	83.98
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	80.62

>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

Probab=100.00  E-value=7.7e-69  Score=619.55  Aligned_cols=465  Identities=13%  Similarity=0.155  Sum_probs=371.7

Q ss_pred             CCCcCCCcEECCHHHHHHHHHHHHHHcCceEEEEeecCe-------EEEEEecc--------------------------
Q 037776          160 KMILYHGQRFRDVSHFRKAIEVFAIRDGFKLCVMENRAH-------AVSYECSD--------------------------  206 (716)
Q Consensus       160 ~~~l~vG~~F~s~ee~k~ai~~yAi~~gf~~~~~kS~~~-------r~~~~C~~--------------------------  206 (716)
                      ...+.+||+|+|.++++.+|+.||.+.||++++.++.+.       ..+++|++                          
T Consensus        71 ~~~P~vGMeF~S~eeA~~FYn~YA~~~GFsVRi~~srrsk~~~~ii~r~fvCsreG~~~~~~~~~~~~~~~~~k~~~~~~  150 (846)
T PLN03097         71 NLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQTKQDPENG  150 (846)
T ss_pred             CccCcCCCeECCHHHHHHHHHHHHhhcCceEEeeceeccCCCCcEEEEEEEEcCCCCCcccccccccccccccccCcccc
Confidence            446799999999999999999999999999998755431       23577754                          


Q ss_pred             --------CCCceEEEEEEecCcceEEEEEecCccccccccccccc-h-hhHHHHHHhhhhhcCCCCCHHHHHHHHHHHh
Q 037776          207 --------LRCDWKIKAERVVNGRTFIVTEFVAQHKCTRRHQQFQH-R-SKWISAIYLHRWKLQPNLRTVDIKDEIKATY  276 (716)
Q Consensus       207 --------~gCpwri~as~~~~~~~w~V~~~~~~HtC~~~~~~~~~-~-s~~ia~~~~~~i~~~~~~~~~~I~~~l~~~~  276 (716)
                              .||+++|++.+ ...+.|.|+.+..+|||++....... + ++.+.. +...+....++..      ++...
T Consensus       151 ~~rR~~tRtGC~A~m~Vk~-~~~gkW~V~~fv~eHNH~L~p~~~~~~~~r~~~~~-~~~~~~~~~~v~~------~~~d~  222 (846)
T PLN03097        151 TGRRSCAKTDCKASMHVKR-RPDGKWVIHSFVKEHNHELLPAQAVSEQTRKMYAA-MARQFAEYKNVVG------LKNDS  222 (846)
T ss_pred             cccccccCCCCceEEEEEE-cCCCeEEEEEEecCCCCCCCCccccchhhhhhHHH-HHhhhhccccccc------cchhh
Confidence                    37999999987 45678999999999999997653322 1 111111 0000100000000      00000


Q ss_pred             CcccCHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCCcEEEEEeccC---cCchhh---hHHHHHhcCccEEE
Q 037776          277 GVVCHEAKLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRH---EYGEER---TSYAFKNHCRRLLA  350 (716)
Q Consensus       277 g~~~s~~k~~rak~~a~~~~~g~~~~sy~~L~~y~~~l~~~NPg~~~~v~~d~~---~~~F~~---si~~f~~~~r~vi~  350 (716)
                           ...+-+.++..+  .    ......|..||++++..||+|+|.+++|++   .++||.   |+..| .+|++||+
T Consensus       223 -----~~~~~~~r~~~~--~----~gD~~~ll~yf~~~q~~nP~Ffy~~qlDe~~~l~niFWaD~~sr~~Y-~~FGDvV~  290 (846)
T PLN03097        223 -----KSSFDKGRNLGL--E----AGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRLKNLFWVDAKSRHDY-GNFSDVVS  290 (846)
T ss_pred             -----cchhhHHHhhhc--c----cchHHHHHHHHHHHHhhCCCceEEEEEccCCCeeeEEeccHHHHHHH-HhcCCEEE
Confidence                 001111122111  1    234578999999999999999999999985   479998   89999 57999999


Q ss_pred             EeCceeccccCceeEEEEEEcCCCceEEEEEEEeecCCchhHHHHHHHHHHHcccCCCCCeEEEcCCcchHHHHHHhhcc
Q 037776          351 VDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWVFFIKNINNALRLDHGEGLCIMGDGDNGIDYAIEEFLP  430 (716)
Q Consensus       351 iD~T~~~~~y~~~ll~avg~d~~~~~~pla~alv~~E~~es~~Wfl~~l~~~~~~~~~~~~~iitD~~~al~~Ai~~vfP  430 (716)
                      ||+||++|+|++||++++|+|+|+|+++|||||+.+|+.++|.|+|++|+++|  ++.+|.+||||++.+|.+||++|||
T Consensus       291 fDTTY~tN~y~~Pfa~FvGvNhH~qtvlfGcaLl~dEt~eSf~WLf~tfl~aM--~gk~P~tIiTDqd~am~~AI~~VfP  368 (846)
T PLN03097        291 FDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAM--GGQAPKVIITDQDKAMKSVISEVFP  368 (846)
T ss_pred             EeceeeccccCcEEEEEEEecCCCCeEEEEEEEcccCchhhHHHHHHHHHHHh--CCCCCceEEecCCHHHHHHHHHHCC
Confidence            99999999999999999999999999999999999999999999999999999  6899999999999999999999999


Q ss_pred             ccccccchHHHHH-HHhhhCCC-----ChhhHHHHHHhh-cCCHHHHHHHHHHHHh-hChhhHHHHhhc--CCCCccccc
Q 037776          431 KAVYRQCCLKIFT-EMVKRFPT-----APVEHFFWSACR-STSATSFNKYMDLIHN-ESEECHDWLLQT--DWSSWALFT  500 (716)
Q Consensus       431 ~a~h~~~C~~Hi~-N~~~~~~~-----~~~~~~~~~~~~-a~t~~eFe~~~~~l~~-~~~~~~~yL~~~--~~~~W~~a~  500 (716)
                      ++.| ++|+|||+ |+.+++..     ..+...|+.|++ +.++++|+..|..|.. ++.+.++||..+  .+++|+++|
T Consensus       369 ~t~H-r~C~wHI~~~~~e~L~~~~~~~~~f~~~f~~cv~~s~t~eEFE~~W~~mi~ky~L~~n~WL~~LY~~RekWapaY  447 (846)
T PLN03097        369 NAHH-CFFLWHILGKVSENLGQVIKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLYEDRKQWVPTY  447 (846)
T ss_pred             Ccee-hhhHHHHHHHHHHHhhHHhhhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccccHHHHHHHHhHhhhhHHH
Confidence            9999 99999999 99998853     588899999887 6899999999998864 889999999998  899999999


Q ss_pred             cCCcccccccccchhhHHhHHHhh--hhcCcHHHHHHHHHHHHHHHHHHHHHh-----------------HhhhccCcCC
Q 037776          501 IPKWVKCICVTLSITDKLRNYLHQ--YLEMSIASRYVAIARLTAELFERRRME-----------------VWNWYREKVT  561 (716)
Q Consensus       501 ~~~~~~~~~~TtN~~Es~N~~lk~--~r~lpi~~lle~i~~~~~~~~~~r~~~-----------------~~~~~~~~~t  561 (716)
                      +++.|..|+.||+++||+|+.|++  .+..+|..|++.+...+..+..+..+.                 ..+.+. +||
T Consensus       448 ~k~~F~agm~sTqRSES~Ns~fk~yv~~~tsL~~Fv~qye~~l~~~~ekE~~aD~~s~~~~P~l~t~~piEkQAs~-iYT  526 (846)
T PLN03097        448 MRDAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPLEKSVSG-VYT  526 (846)
T ss_pred             hcccccCCcccccccccHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcccccccHHHHHHHH-HhH
Confidence            999999999999999999999998  467888888887766555444332211                 112234 999


Q ss_pred             HHHHHHHHHHhhccceEEEEEecC----eEEEEEecC-ceEEEEec----cCceeeecccccCCCCchhHHHHHHHhhc-
Q 037776          562 PTVREVIKDRTIDGQRFVLVEENG----NRLKLIDTT-SIIFYLNM----EAQSCSCGLRQKSGIPCAHACKGIQLIMG-  631 (716)
Q Consensus       562 p~~~k~l~~~~~~a~~~~V~~~~~----~~f~V~~~~-~~~~~V~l----~~~tCsC~~~~~~GiPC~H~lav~~~~~~-  631 (716)
                      |.+|++||+++..+..|.+...+.    .+|.|...+ ...|.|..    ...+|+|++|+..||||+|||+|+...++ 
T Consensus       527 ~~iF~kFQ~El~~~~~~~~~~~~~dg~~~~y~V~~~~~~~~~~V~~d~~~~~v~CsC~kFE~~GILCrHaLkVL~~~~v~  606 (846)
T PLN03097        527 HAVFKKFQVEVLGAVACHPKMESQDETSITFRVQDFEKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHALVVLQMCQLS  606 (846)
T ss_pred             HHHHHHHHHHHHHhhheEEeeeccCCceEEEEEEEecCCCcEEEEEecCCCeEEeeccCeecCccchhhHHHHHhhcCcc
Confidence            999999999999999988876432    378887632 22377743    36899999999999999999999999998 


Q ss_pred             -cchhhhcccchHHHHhh
Q 037776          632 -NVEEYVDNMMSVQNFCS  648 (716)
Q Consensus       632 -~~~~yi~~~ys~~~~~~  648 (716)
                       .|..||.++||+++-..
T Consensus       607 ~IP~~YILkRWTKdAK~~  624 (846)
T PLN03097        607 AIPSQYILKRWTKDAKSR  624 (846)
T ss_pred             cCchhhhhhhchhhhhhc
Confidence             59999999999988653

>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]

Probab=99.84  E-value=6e-21  Score=166.88  Aligned_cols=89  Identities=30%  Similarity=0.464  Sum_probs=84.8

Q ss_pred             CceeccccCceeEE---EEEEcCCCceEEEEEEEeecCCchhHHHHHHHHHHHcccCCCCCeEEEcCCcchHHHHHHhhc
Q 037776          353 GWKINNPYNSVMLV---AAALDGNNGILPIAFCEVHVEDLDSWVFFIKNINNALRLDHGEGLCIMGDGDNGIDYAIEEFL  429 (716)
Q Consensus       353 ~T~~~~~y~~~ll~---avg~d~~~~~~pla~alv~~E~~es~~Wfl~~l~~~~~~~~~~~~~iitD~~~al~~Ai~~vf  429 (716)
                      |||++|+| ++++.   ++|+|++|+.+|+||+++.+|+.++|.|||+.|++.+.  .. |.+||||++.|+.+||+++|
T Consensus         1 ~T~~tn~~-~~l~~~~~~~~~d~~~~~~~v~~~l~~~e~~~~~~~~l~~~~~~~~--~~-p~~ii~D~~~~~~~Ai~~vf   76 (93)
T PF10551_consen    1 GTYKTNKY-GPLLYLMIAVGIDGNGRGFPVAFALVSSESEESYEWFLEKLKEAMP--QK-PKVIISDFDKALINAIKEVF   76 (93)
T ss_pred             Cccccccc-cccceeceEEEEcCCCCEEEEEEEEEcCCChhhhHHHHHHhhhccc--cC-ceeeeccccHHHHHHHHHHC
Confidence            79999999 98886   99999999999999999999999999999999999994  45 99999999999999999999


Q ss_pred             cccccccchHHHHH-HHh
Q 037776          430 PKAVYRQCCLKIFT-EMV  446 (716)
Q Consensus       430 P~a~h~~~C~~Hi~-N~~  446 (716)
                      |++.| ++|.||+. |++
T Consensus        77 P~~~~-~~C~~H~~~n~k   93 (93)
T PF10551_consen   77 PDARH-QLCLFHILRNIK   93 (93)
T ss_pred             CCceE-ehhHHHHHHhhC
Confidence            99999 99999999 874

This domain is also found in a transposase for the insertion sequence element IS256 in transposon Tn4001 [].

>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=99.80  E-value=2.6e-20  Score=203.72  Aligned_cols=223  Identities=16%  Similarity=0.242  Sum_probs=182.4

Q ss_pred             CCCCHHHHHHHHHHHhC-cccCHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCCcEEEEEeccCcCchhhhHH
Q 037776          261 PNLRTVDIKDEIKATYG-VVCHEAKLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEERTSY  339 (716)
Q Consensus       261 ~~~~~~~I~~~l~~~~g-~~~s~~k~~rak~~a~~~~~g~~~~sy~~L~~y~~~l~~~NPg~~~~v~~d~~~~~F~~si~  339 (716)
                      .+++.++|.+.|+..+| ..+|.+++.|..+.+.+.+           ..|...-                         
T Consensus       113 ~G~Str~i~~~l~~l~g~~~~S~s~vSri~~~~~~~~-----------~~w~~R~-------------------------  156 (381)
T PF00872_consen  113 KGVSTRDIEEALEELYGEVAVSKSTVSRITKQLDEEV-----------EAWRNRP-------------------------  156 (381)
T ss_pred             cccccccccchhhhhhcccccCchhhhhhhhhhhhhH-----------HHHhhhc-------------------------
Confidence            58899999999999999 8899999988776654321           1111110                         


Q ss_pred             HHHhcC-ccEEEEeCceeccccCc-----eeEEEEEEcCCCceEEEEEEEeecCCchhHHHHHHHHHHHcccCCCCCeEE
Q 037776          340 AFKNHC-RRLLAVDGWKINNPYNS-----VMLVAAALDGNNGILPIAFCEVHVEDLDSWVFFIKNINNALRLDHGEGLCI  413 (716)
Q Consensus       340 ~f~~~~-r~vi~iD~T~~~~~y~~-----~ll~avg~d~~~~~~pla~alv~~E~~es~~Wfl~~l~~~~~~~~~~~~~i  413 (716)
                       . ... -++|+|||+|.+.+.++     .+++++|+|.+|+..+||+.+...|+.++|.-||+.|++.+   ...|..|
T Consensus       157 -L-~~~~y~~l~iD~~~~kvr~~~~~~~~~~~v~iGi~~dG~r~vLg~~~~~~Es~~~W~~~l~~L~~RG---l~~~~lv  231 (381)
T PF00872_consen  157 -L-ESEPYPYLWIDGTYFKVREDGRVVKKAVYVAIGIDEDGRREVLGFWVGDRESAASWREFLQDLKERG---LKDILLV  231 (381)
T ss_pred             -c-ccccccceeeeeeecccccccccccchhhhhhhhhcccccceeeeecccCCccCEeeecchhhhhcc---cccccee
Confidence             0 123 48999999999877544     57999999999999999999999999999999999999987   4568999


Q ss_pred             EcCCcchHHHHHHhhccccccccchHHHHH-HHhhhCCCC---hhhHHHHHHhhcCCHHHHHHHHHHHHh----hChhhH
Q 037776          414 MGDGDNGIDYAIEEFLPKAVYRQCCLKIFT-EMVKRFPTA---PVEHFFWSACRSTSATSFNKYMDLIHN----ESEECH  485 (716)
Q Consensus       414 itD~~~al~~Ai~~vfP~a~h~~~C~~Hi~-N~~~~~~~~---~~~~~~~~~~~a~t~~eFe~~~~~l~~----~~~~~~  485 (716)
                      |+|+++||..||.++||++.+ +.|++|++ |+.++++.+   .+...++.+..+.+.+++...++.+.+    ..|.+.
T Consensus       232 v~Dg~~gl~~ai~~~fp~a~~-QrC~vH~~RNv~~~v~~k~~~~v~~~Lk~I~~a~~~e~a~~~l~~f~~~~~~kyp~~~  310 (381)
T PF00872_consen  232 VSDGHKGLKEAIREVFPGAKW-QRCVVHLMRNVLRKVPKKDRKEVKADLKAIYQAPDKEEAREALEEFAEKWEKKYPKAA  310 (381)
T ss_pred             eccccccccccccccccchhh-hhheechhhhhccccccccchhhhhhccccccccccchhhhhhhhcccccccccchhh
Confidence            999999999999999999999 99999999 999998654   667778888788888888777777654    478888


Q ss_pred             HHHhhcCCCCccccccCCcccccccccchhhHHhHHHhhh
Q 037776          486 DWLLQTDWSSWALFTIPKWVKCICVTLSITDKLRNYLHQY  525 (716)
Q Consensus       486 ~yL~~~~~~~W~~a~~~~~~~~~~~TtN~~Es~N~~lk~~  525 (716)
                      ++|.+.....|+..-|+...+--+.|||.+|++|+.||..
T Consensus       311 ~~l~~~~~~~~tf~~fP~~~~~~i~TTN~iEsln~~irrr  350 (381)
T PF00872_consen  311 KSLEENWDELLTFLDFPPEHRRSIRTTNAIESLNKEIRRR  350 (381)
T ss_pred             hhhhhccccccceeeecchhccccchhhhccccccchhhh
Confidence            8888876666665545554355778999999999999983

Transposases have been grouped into various families [, , ]. The mutator family of transposases consists of a number of elements that include, mutator from maize, IsT2 from Thiobacillus ferrooxidans, Is256 from Staphylococcus aureus, Is1201 from Lactobacillus helveticus, Is1081 from Mycobacterium bovis, IsRm3 from Rhizobium meliloti and others. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ]

Probab=99.66  E-value=3.7e-16  Score=127.66  Aligned_cols=66  Identities=27%  Similarity=0.579  Sum_probs=64.0

Q ss_pred             CCcCCCcEECCHHHHHHHHHHHHHHcCceEEEEeecCeEEEEEeccCCCceEEEEEEecCcceEEE
Q 037776          161 MILYHGQRFRDVSHFRKAIEVFAIRDGFKLCVMENRAHAVSYECSDLRCDWKIKAERVVNGRTFIV  226 (716)
Q Consensus       161 ~~l~vG~~F~s~ee~k~ai~~yAi~~gf~~~~~kS~~~r~~~~C~~~gCpwri~as~~~~~~~w~V  226 (716)
                      +.|.+||+|+|+++|+.||..||++++|++++.+|+++|++++|...+|||+|+|++.++++.|+|
T Consensus         2 ~~l~~G~~F~~~~e~k~av~~yai~~~~~~~v~ksd~~r~~~~C~~~~C~Wrv~as~~~~~~~~~I   67 (67)
T PF03108_consen    2 PELEVGQTFPSKEEFKEAVREYAIKNGFEFKVKKSDKKRYRAKCKDKGCPWRVRASKRKRSDTFQI   67 (67)
T ss_pred             CccccCCEECCHHHHHHHHHHHHHhcCcEEEEeccCCEEEEEEEcCCCCCEEEEEEEcCCCCEEEC
Confidence            469999999999999999999999999999999999999999999999999999999999999986

The function of these proteins is unknown. More information about these proteins can be found at Protein of the Month: Transposase [].

>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=99.44  E-value=8.1e-13  Score=142.18  Aligned_cols=221  Identities=14%  Similarity=0.152  Sum_probs=165.6

Q ss_pred             CCCCCHHHHHHHHHHHhCcccCHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCCcEEEEEeccCcCchhhhHH
Q 037776          260 QPNLRTVDIKDEIKATYGVVCHEAKLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEERTSY  339 (716)
Q Consensus       260 ~~~~~~~~I~~~l~~~~g~~~s~~k~~rak~~a~~~~~g~~~~sy~~L~~y~~~l~~~NPg~~~~v~~d~~~~~F~~si~  339 (716)
                      ..+++++++...+++.++..+|...+.+.-...++.               +.+++..-                     
T Consensus        98 ~~gv~Tr~i~~~~~~~~~~~~s~~~iS~~~~~~~e~---------------v~~~~~r~---------------------  141 (379)
T COG3328          98 AKGVTTREIEALLEELYGHKVSPSVISVVTDRLDEK---------------VKAWQNRP---------------------  141 (379)
T ss_pred             HcCCcHHHHHHHHHHhhCcccCHHHhhhHHHHHHHH---------------HHHHHhcc---------------------
Confidence            358899999999999999888887777665544432               22222221                     


Q ss_pred             HHHhcCccEEEEeCceeccc--cCceeEEEEEEcCCCceEEEEEEEeecCCchhHHHHHHHHHHHcccCCCCCeEEEcCC
Q 037776          340 AFKNHCRRLLAVDGWKINNP--YNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWVFFIKNINNALRLDHGEGLCIMGDG  417 (716)
Q Consensus       340 ~f~~~~r~vi~iD~T~~~~~--y~~~ll~avg~d~~~~~~pla~alv~~E~~es~~Wfl~~l~~~~~~~~~~~~~iitD~  417 (716)
                        + +..+++++||+|++-+  -+..+++|+|++.+|+..+||+.+...|+ ..|.-||..|+..+   ......+++|.
T Consensus       142 --l-~~~~~v~~D~~~~k~r~v~~~~~~ia~Gv~~eG~reilg~~~~~~e~-~~w~~~l~~l~~rg---l~~v~l~v~Dg  214 (379)
T COG3328         142 --L-GDYPYVYLDAKYVKVRSVRNKAVYIAIGVTEEGRREILGIWVGVRES-KFWLSFLLDLKNRG---LSDVLLVVVDG  214 (379)
T ss_pred             --c-cCceEEEEecceeehhhhhhheeeeeeccCcccchhhhceeeecccc-hhHHHHHHHHHhcc---ccceeEEecch
Confidence              1 3568999999999988  44579999999999999999999999999 99998999998886   34556677899


Q ss_pred             cchHHHHHHhhccccccccchHHHHH-HHhhhCCCC---hhhHHHHHHhhcCCHHHHHHHHHHH----HhhChhhHHHHh
Q 037776          418 DNGIDYAIEEFLPKAVYRQCCLKIFT-EMVKRFPTA---PVEHFFWSACRSTSATSFNKYMDLI----HNESEECHDWLL  489 (716)
Q Consensus       418 ~~al~~Ai~~vfP~a~h~~~C~~Hi~-N~~~~~~~~---~~~~~~~~~~~a~t~~eFe~~~~~l----~~~~~~~~~yL~  489 (716)
                      .+|+.+||.++||.+.+ +.|..|+. |+..+...+   .+...+..+..+.+.++....|..+    ....|....++.
T Consensus       215 ~~gl~~aI~~v~p~a~~-Q~C~vH~~Rnll~~v~~k~~d~i~~~~~~I~~a~~~e~~~~~~~~~~~~w~~~yP~i~~~~~  293 (379)
T COG3328         215 LKGLPEAISAVFPQAAV-QRCIVHLVRNLLDKVPRKDQDAVLSDLRSIYIAPDAEEALLALLAFSELWGKRYPAILKSWR  293 (379)
T ss_pred             hhhhHHHHHHhccHhhh-hhhhhHHHhhhhhhhhhhhhHHHHhhhhhhhccCCcHHHHHHHHHHHHhhhhhcchHHHHHH
Confidence            99999999999999999 99999999 999988765   3334444455566666555555553    334677777777


Q ss_pred             hcCCCCccccccCCcccccccccchhhHHhHHHhh
Q 037776          490 QTDWSSWALFTIPKWVKCICVTLSITDKLRNYLHQ  524 (716)
Q Consensus       490 ~~~~~~W~~a~~~~~~~~~~~TtN~~Es~N~~lk~  524 (716)
                      +.--+.|.-.-|+...+--+.|||.+|++|+.++.
T Consensus       294 ~~~~~~~~F~~fp~~~r~~i~ttN~IE~~n~~ir~  328 (379)
T COG3328         294 NALEELLPFFAFPSEIRKIIYTTNAIESLNKLIRR  328 (379)
T ss_pred             HHHHHhcccccCcHHHHhHhhcchHHHHHHHHHHH
Confidence            76444443222222213457899999999998875

>smart00575 ZnF_PMZ plant mutator transposase zinc finger

Probab=98.87  E-value=8.8e-10  Score=73.09  Aligned_cols=27  Identities=44%  Similarity=0.646  Sum_probs=25.1

Q ss_pred             ceeeecccccCCCCchhHHHHHHHhhc
Q 037776          605 QSCSCGLRQKSGIPCAHACKGIQLIMG  631 (716)
Q Consensus       605 ~tCsC~~~~~~GiPC~H~lav~~~~~~  631 (716)
                      .+|||++||..||||+|+|+|+...++
T Consensus         1 ~~CsC~~~~~~gipC~H~i~v~~~~~~   27 (28)
T smart00575        1 KTCSCRKFQLSGIPCRHALAAAIHIGL   27 (28)
T ss_pred             CcccCCCcccCCccHHHHHHHHHHhCC
Confidence            479999999999999999999998875

>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis

Probab=98.67  E-value=1e-07  Score=83.23  Aligned_cols=69  Identities=12%  Similarity=0.355  Sum_probs=65.2

Q ss_pred             ECCHHHHHHHHHHHHHHcCceEEEEeecCeEEEEEecc------------------------------------------
Q 037776          169 FRDVSHFRKAIEVFAIRDGFKLCVMENRAHAVSYECSD------------------------------------------  206 (716)
Q Consensus       169 F~s~ee~k~ai~~yAi~~gf~~~~~kS~~~r~~~~C~~------------------------------------------  206 (716)
                      |.+++|++-+|+.++...|++|.+.+||.+.+.|+|..                                          
T Consensus         1 F~~k~~ikpwlq~~~~~~Gi~iVIerSd~~ki~FkCk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~t~srk   80 (111)
T PF08731_consen    1 FDDKDEIKPWLQKIFYPQGIGIVIERSDKKKIVFKCKNGKRYRHKKKKKGQAQAQQKESTSGNKNKSSKKKKKKRTKSRK   80 (111)
T ss_pred             CCchHHHHHHHHHHhhhcCceEEEEecCCceEEEEEecCCCcccccccccccccccccccccccccccccccCCcccccc
Confidence            78999999999999999999999999999999999952                                          


Q ss_pred             CCCceEEEEEEecCcceEEEEEecCcccccc
Q 037776          207 LRCDWKIKAERVVNGRTFIVTEFVAQHKCTR  237 (716)
Q Consensus       207 ~gCpwri~as~~~~~~~w~V~~~~~~HtC~~  237 (716)
                      ..|||+|+|......+.|.|..++..|+|++
T Consensus        81 ~~CPFriRA~yS~k~k~W~lvvvnn~HnH~l  111 (111)
T PF08731_consen   81 NTCPFRIRANYSKKNKKWTLVVVNNEHNHPL  111 (111)
T ss_pred             cCCCeEEEEEEEecCCeEEEEEecCCcCCCC
Confidence            3899999999999999999999999999974

This entry includes the paralogous pair of transcription factors AFT1 and AFT2.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=98.41  E-value=5e-07  Score=78.39  Aligned_cols=61  Identities=26%  Similarity=0.429  Sum_probs=53.8

Q ss_pred             HHHHHHHHHcCceEEEEeecCe-------EEEEEecc----------------------CCCceEEEEEEecCcceEEEE
Q 037776          177 KAIEVFAIRDGFKLCVMENRAH-------AVSYECSD----------------------LRCDWKIKAERVVNGRTFIVT  227 (716)
Q Consensus       177 ~ai~~yAi~~gf~~~~~kS~~~-------r~~~~C~~----------------------~gCpwri~as~~~~~~~w~V~  227 (716)
                      ++|+.||..+||.+++.+|.+.       ++.++|..                      .||||+|.+.+.. .+.|.|+
T Consensus         1 ~fy~~yA~~~GF~vr~~~s~~~~~~~~~~~~~~~C~r~G~~~~~~~~~~~~~r~~~s~ktgC~a~i~v~~~~-~~~w~v~   79 (91)
T PF03101_consen    1 DFYNSYARRHGFSVRKSSSRKSKKNGEIKRVTFVCSRGGKYKSKKKNEEKRRRNRPSKKTGCKARINVKRRK-DGKWRVT   79 (91)
T ss_pred             CHHHHhcCcCCeEEEEeeeEeCCCCceEEEEEEEECCcccccccccccccccccccccccCCCEEEEEEEcc-CCEEEEE
Confidence            4789999999999999876553       78999974                      5999999999877 8999999


Q ss_pred             EecCccccccc
Q 037776          228 EFVAQHKCTRR  238 (716)
Q Consensus       228 ~~~~~HtC~~~  238 (716)
                      .+..+|||++.
T Consensus        80 ~~~~~HNH~L~   90 (91)
T PF03101_consen   80 SFVLEHNHPLC   90 (91)
T ss_pred             ECcCCcCCCCC
Confidence            99999999875

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.10  E-value=2.7e-06  Score=61.79  Aligned_cols=31  Identities=32%  Similarity=0.571  Sum_probs=27.5

Q ss_pred             EeccCceeeecccccCCCCchhHHHHHHHhh
Q 037776          600 LNMEAQSCSCGLRQKSGIPCAHACKGIQLIM  630 (716)
Q Consensus       600 V~l~~~tCsC~~~~~~GiPC~H~lav~~~~~  630 (716)
                      +++...+|||..|+..|.||+|++|++...+
T Consensus        10 ~~~~~~~CsC~~~~~~~~~CkHi~av~~~~~   40 (40)
T PF04434_consen   10 VSIEQASCSCPYFQFRGGPCKHIVAVLLALN   40 (40)
T ss_pred             ccccccEeeCCCccccCCcchhHHHHHHhhC
Confidence            5667899999999999999999999998753

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the SWIM (SWI2/SNF2 and MuDR) zinc-binding domain, which is found in a variety of prokaryotic and eukaryotic proteins, such as mitogen-activated protein kinase kinase kinase 1 (or MEKK1). It is also found in the related protein MEX (MEKK1-related protein X), a testis-expressed protein that acts as an E3 ubiquitin ligase through the action of E2 ubiquitin-conjugating enzymes in the proteasome degradation pathway; the SWIM domain is critical for MEX ubiquitination []. SWIM domains are also found in the homologous recombination protein Sws1 [], as well as in several hypothetical proteins. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding

>PF13610 DDE_Tnp_IS240: DDE domain

Probab=96.61  E-value=0.00094  Score=62.87  Aligned_cols=81  Identities=21%  Similarity=0.136  Sum_probs=67.8

Q ss_pred             ccEEEEeCceeccccCceeEEEEEEcCCCceEEEEEEEeecCCchhHHHHHHHHHHHcccCCCCCeEEEcCCcchHHHHH
Q 037776          346 RRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWVFFIKNINNALRLDHGEGLCIMGDGDNGIDYAI  425 (716)
Q Consensus       346 r~vi~iD~T~~~~~y~~~ll~avg~d~~~~~~pla~alv~~E~~es~~Wfl~~l~~~~~~~~~~~~~iitD~~~al~~Ai  425 (716)
                      ++.+.+|-||.+.+=+ ..+...++|.+++  +|++-|-..-+..+=..||..+.+..   ...|..|+||+.++...|+
T Consensus         1 ~~~w~~DEt~iki~G~-~~yl~~aiD~~~~--~l~~~ls~~Rd~~aA~~Fl~~~l~~~---~~~p~~ivtDk~~aY~~A~   74 (140)
T PF13610_consen    1 GDSWHVDETYIKIKGK-WHYLWRAIDAEGN--ILDFYLSKRRDTAAAKRFLKRALKRH---RGEPRVIVTDKLPAYPAAI   74 (140)
T ss_pred             CCEEEEeeEEEEECCE-EEEEEEeeccccc--chhhhhhhhcccccceeeccccceee---ccccceeecccCCccchhh
Confidence            3678999999875433 3455788899999  89999999999998899998888877   2689999999999999999


Q ss_pred             Hhhcccc
Q 037776          426 EEFLPKA  432 (716)
Q Consensus       426 ~~vfP~a  432 (716)
                      ++++|..
T Consensus        75 ~~l~~~~   81 (140)
T PF13610_consen   75 KELNPEG   81 (140)
T ss_pred             hhccccc
Confidence            9998874

>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function

Probab=94.87  E-value=1.5  Score=49.84  Aligned_cols=132  Identities=17%  Similarity=0.165  Sum_probs=94.2

Q ss_pred             cCCchhHHHHHHHHHHHcccCCCCCeEEEcCCcchHHHHHHhhccccccccchHHHHH-HHhhhCCC-ChhhHHHHHHhh
Q 037776          386 VEDLDSWVFFIKNINNALRLDHGEGLCIMGDGDNGIDYAIEEFLPKAVYRQCCLKIFT-EMVKRFPT-APVEHFFWSACR  463 (716)
Q Consensus       386 ~E~~es~~Wfl~~l~~~~~~~~~~~~~iitD~~~al~~Ai~~vfP~a~h~~~C~~Hi~-N~~~~~~~-~~~~~~~~~~~~  463 (716)
                      ..+.+-|.-+.+.+.+...+....-+++.+|+...|..++. .+|.+.| .+..+|+. .+.+.++. +.+...++.+.+
T Consensus       235 ~~~~~~~~~v~~~i~~~Y~~~~~~~iiingDGa~WIk~~~~-~~~~~~~-~LD~FHl~k~i~~~~~~~~~~~~~~~~al~  312 (470)
T PF06782_consen  235 ESAEEFWEEVLDYIYNHYDLDKTTKIIINGDGASWIKEGAE-FFPKAEY-FLDRFHLNKKIKQALSHDPELKEKIRKALK  312 (470)
T ss_pred             cchHHHHHHHHHHHHHhcCcccceEEEEeCCCcHHHHHHHH-hhcCceE-EecHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence            55678899999999998864444457788999999988776 9999999 99999999 99888863 467777888888


Q ss_pred             cCCHHHHHHHHHHHHhh--Ch-------hhHHHHhhcCCCCccccccCCcccccccccchhhHHhHHHhh
Q 037776          464 STSATSFNKYMDLIHNE--SE-------ECHDWLLQTDWSSWALFTIPKWVKCICVTLSITDKLRNYLHQ  524 (716)
Q Consensus       464 a~t~~eFe~~~~~l~~~--~~-------~~~~yL~~~~~~~W~~a~~~~~~~~~~~TtN~~Es~N~~lk~  524 (716)
                      .....+++..++.+...  .+       +...||..+....  .+|-.   +-|.......|+.+..+..
T Consensus       313 ~~d~~~l~~~L~~~~~~~~~~~~~~~i~~~~~Yl~~n~~~i--~~y~~---~~~~~g~g~ee~~~~~~s~  377 (470)
T PF06782_consen  313 KGDKKKLETVLDTAESCAKDEEERKKIRKLRKYLLNNWDGI--KPYRE---REGLRGIGAEESVSHVLSY  377 (470)
T ss_pred             hcCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHCHHHh--hhhhh---ccCCCccchhhhhhhHHHH
Confidence            88888998888887653  22       3455665541111  12211   1233445567888777643

>PHA02517 putative transposase OrfB; Reviewed

Probab=93.16  E-value=3.4  Score=43.34  Aligned_cols=148  Identities=11%  Similarity=0.039  Sum_probs=81.4

Q ss_pred             HHHHHHhhhhhc-CCCCCHHHHHHHHHHHhCcccCHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCCcEEEEE
Q 037776          248 WISAIYLHRWKL-QPNLRTVDIKDEIKATYGVVCHEAKLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLE  326 (716)
Q Consensus       248 ~ia~~~~~~i~~-~~~~~~~~I~~~l~~~~g~~~s~~k~~rak~~a~~~~~g~~~~sy~~L~~y~~~l~~~NPg~~~~v~  326 (716)
                      .+...+.+.+.. .+.++.+.|...|++. |+.+|.++++|..+.+     |-....       ...-.....+... . 
T Consensus        30 ~l~~~I~~i~~~~~~~~G~r~I~~~L~~~-g~~vs~~tV~Rim~~~-----gl~~~~-------~~k~~~~~~~~~~-~-   94 (277)
T PHA02517         30 WLKSEILRVYDENHQVYGVRKVWRQLNRE-GIRVARCTVGRLMKEL-----GLAGVL-------RGKKVRTTISRKA-V-   94 (277)
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHhc-CcccCHHHHHHHHHHc-----CCceEe-------cCCCcCCCCCCCC-C-
Confidence            455555666554 5889999999998755 9999999998865432     110000       0000000000000 0 


Q ss_pred             eccC--cCchhhhHHHHHhcCccEEEEeCceeccccCceeEEEEEEcCCCceEEEEEEEeecCCchhHHHHHHHHHHHcc
Q 037776          327 TKRH--EYGEERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWVFFIKNINNALR  404 (716)
Q Consensus       327 ~d~~--~~~F~~si~~f~~~~r~vi~iD~T~~~~~y~~~ll~avg~d~~~~~~pla~alv~~E~~es~~Wfl~~l~~~~~  404 (716)
                      ..++  ...|..      ..-..+++.|.|++...- +..++++-+|...+ +++|+.+...++.+.   ++..|..++.
T Consensus        95 ~~~n~~~r~f~~------~~pn~~w~~D~t~~~~~~-g~~yl~~iiD~~sr-~i~~~~~~~~~~~~~---~~~~l~~a~~  163 (277)
T PHA02517         95 AAPDRVNRQFVA------TRPNQLWVADFTYVSTWQ-GWVYVAFIIDVFAR-RIVGWRVSSSMDTDF---VLDALEQALW  163 (277)
T ss_pred             CCCCcccCCCCC------CCCCCeEEeceeEEEeCC-CCEEEEEecccCCC-eeeecccCCCCChHH---HHHHHHHHHH
Confidence            0000  111211      124568999999986543 55566666776555 467788887777775   4455554442


Q ss_pred             c-CCCCCeEEEcCCcchH
Q 037776          405 L-DHGEGLCIMGDGDNGI  421 (716)
Q Consensus       405 ~-~~~~~~~iitD~~~al  421 (716)
                      . +...+..|.||+....
T Consensus       164 ~~~~~~~~i~~sD~G~~y  181 (277)
T PHA02517        164 ARGRPGGLIHHSDKGSQY  181 (277)
T ss_pred             hcCCCcCcEeeccccccc
Confidence            1 1222356779998754

>PRK14702 insertion element IS2 transposase InsD; Provisional

Probab=92.19  E-value=7.5  Score=40.57  Aligned_cols=145  Identities=8%  Similarity=-0.014  Sum_probs=85.2

Q ss_pred             hHHHHHHhhhhhcCCCCCHHHHHHHHHHH---hCc-ccCHHHHHHHHHHH-HHHhcCChhhHHHHHHHHHHHHHHhCCCc
Q 037776          247 KWISAIYLHRWKLQPNLRTVDIKDEIKAT---YGV-VCHEAKLLCAAKRA-KHILGMDHEDGYAILNQFKDEMERINSRN  321 (716)
Q Consensus       247 ~~ia~~~~~~i~~~~~~~~~~I~~~l~~~---~g~-~~s~~k~~rak~~a-~~~~~g~~~~sy~~L~~y~~~l~~~NPg~  321 (716)
                      ..+...+.+.+..++.+..+.|...|+..   .|+ .++..+++|..+.+ +.....                 ...+.+
T Consensus        11 ~~l~~~I~~~~~~~~~yG~rri~~~L~~~~~~~g~~~v~~krV~rlmr~~gL~~~~r-----------------~~~~~~   73 (262)
T PRK14702         11 TDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALLLERK-----------------PAVPPS   73 (262)
T ss_pred             HHHHHHHHHHHHhCcccChHHHHHHHHhhhcccCccccCHHHHHHHHHHhCCccccC-----------------CCCCCC
Confidence            33455566666677889999999999875   377 49999999875442 110000                 000000


Q ss_pred             EEEEEeccCcCchhhhHHHHHhcCccEEEEeCceeccccCceeEEEEEEcCCCceEEEEEEEeec-CCchhHHHHHHH-H
Q 037776          322 IVLLETKRHEYGEERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHV-EDLDSWVFFIKN-I  399 (716)
Q Consensus       322 ~~~v~~d~~~~~F~~si~~f~~~~r~vi~iD~T~~~~~y~~~ll~avg~d~~~~~~pla~alv~~-E~~es~~Wfl~~-l  399 (716)
                      .-     .....|.      ...-..+++.|-||....-++.++.++-+|...+ .++||++... .+.+.-.-+|+. +
T Consensus        74 ~~-----~~~~~~~------~~~pn~~W~~DiT~~~~~~g~~~Yl~~viD~~sR-~ivg~~is~~~~~~~~v~~~l~~A~  141 (262)
T PRK14702         74 KR-----AHTGRVA------VKESNQRWCSDGFEFCCDNGERLRVTFALDCCDR-EALHWAVTTGGFNSETVQDVMLGAV  141 (262)
T ss_pred             Cc-----CCCCccc------cCCCCCEEEeeeEEEEecCCcEEEEEEEEecccc-eeeeEEeccCcCCHHHHHHHHHHHH
Confidence            00     0000010      0123468999999987654446788888887776 6789999874 555554445543 3


Q ss_pred             HHHccc-CCCCCeEEEcCCcch
Q 037776          400 NNALRL-DHGEGLCIMGDGDNG  420 (716)
Q Consensus       400 ~~~~~~-~~~~~~~iitD~~~a  420 (716)
                      ....+. ....|..|.||+...
T Consensus       142 ~~~~~~~~~~~~~iihSD~Gsq  163 (262)
T PRK14702        142 ERRFGNDLPSSPVEWLTDNGSC  163 (262)
T ss_pred             HHHhcccCCCCCeEEEcCCCcc
Confidence            333211 123578889999874

>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=91.84  E-value=0.28  Score=50.68  Aligned_cols=92  Identities=15%  Similarity=0.144  Sum_probs=65.9

Q ss_pred             EEEeCceeccccCceeEEEEEEcC--CCceEEEEEEEeecCCchhHHHHHHHH-HHHcccCCCCCeEEEcCCcchHHHHH
Q 037776          349 LAVDGWKINNPYNSVMLVAAALDG--NNGILPIAFCEVHVEDLDSWVFFIKNI-NNALRLDHGEGLCIMGDGDNGIDYAI  425 (716)
Q Consensus       349 i~iD~T~~~~~y~~~ll~avg~d~--~~~~~pla~alv~~E~~es~~Wfl~~l-~~~~~~~~~~~~~iitD~~~al~~Ai  425 (716)
                      |+||-+.....+..  +..+-+|.  +++.+   ++++++-+.++..-||..+ -...   .....+|++|...+...|+
T Consensus         1 lgiDE~~~~~g~~~--y~t~~~d~~~~~~~i---l~i~~~r~~~~l~~~~~~~~~~~~---~~~v~~V~~Dm~~~y~~~~   72 (249)
T PF01610_consen    1 LGIDEFAFRKGHRS--YVTVVVDLDTDTGRI---LDILPGRDKETLKDFFRSLYPEEE---RKNVKVVSMDMSPPYRSAI   72 (249)
T ss_pred             CeEeeeeeecCCcc--eeEEEEECccCCceE---EEEcCCccHHHHHHHHHHhCcccc---ccceEEEEcCCCccccccc
Confidence            46777666554442  33444554  33332   3578888888888777766 3332   3456889999999999999


Q ss_pred             HhhccccccccchHHHHH-HHhhhC
Q 037776          426 EEFLPKAVYRQCCLKIFT-EMVKRF  449 (716)
Q Consensus       426 ~~vfP~a~h~~~C~~Hi~-N~~~~~  449 (716)
                      ++.||+|.+ ..-.|||+ ++.+.+
T Consensus        73 ~~~~P~A~i-v~DrFHvvk~~~~al   96 (249)
T PF01610_consen   73 REYFPNAQI-VADRFHVVKLANRAL   96 (249)
T ss_pred             ccccccccc-ccccchhhhhhhhcc
Confidence            999999999 99999999 876533

Transposases have been grouped into various families [, , ]. This family includes the IS204 [], IS1001 [], IS1096 [] and IS1165 [] transposases. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=91.27  E-value=0.75  Score=36.45  Aligned_cols=39  Identities=15%  Similarity=0.421  Sum_probs=32.5

Q ss_pred             eEEEEEeccCCCceEEEEEEecCcceEEEEEecCccccc
Q 037776          198 HAVSYECSDLRCDWKIKAERVVNGRTFIVTEFVAQHKCT  236 (716)
Q Consensus       198 ~r~~~~C~~~gCpwri~as~~~~~~~w~V~~~~~~HtC~  236 (716)
                      .|--++|+..+||++-.+.+..+.....++++..+|||+
T Consensus        21 pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen   21 PRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             EEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             eeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            566799999999999999998878888999999999996

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>PRK09409 IS2 transposase TnpB; Reviewed

Probab=91.19  E-value=13  Score=39.70  Aligned_cols=145  Identities=8%  Similarity=0.021  Sum_probs=85.8

Q ss_pred             HHHHHHhhhhhcCCCCCHHHHHHHHHHHh---Cc-ccCHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCCcEE
Q 037776          248 WISAIYLHRWKLQPNLRTVDIKDEIKATY---GV-VCHEAKLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIV  323 (716)
Q Consensus       248 ~ia~~~~~~i~~~~~~~~~~I~~~l~~~~---g~-~~s~~k~~rak~~a~~~~~g~~~~sy~~L~~y~~~l~~~NPg~~~  323 (716)
                      .+...+.+.+..++.+..+.|...|+...   |+ .++..+++|..+.+-  +.+.              .+...+.+. 
T Consensus        51 ~l~~~I~~i~~~~~~yG~Rri~~~L~~~g~~~g~~~v~~k~V~RlMr~~G--l~~~--------------~~~~~~~~~-  113 (301)
T PRK09409         51 DVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNA--LLLE--------------RKPAVPPSK-  113 (301)
T ss_pred             HHHHHHHHHHHhCccCCHHHHHHHHHhhhcccCccccCHHHHHHHHHHcC--Cccc--------------ccCCCCCCC-
Confidence            34555555556678999999999998752   66 589999988754420  0000              000000000 


Q ss_pred             EEEeccCcCchhhhHHHHHhcCccEEEEeCceeccccCceeEEEEEEcCCCceEEEEEEEeec-CCchhHHHHHH-HHHH
Q 037776          324 LLETKRHEYGEERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHV-EDLDSWVFFIK-NINN  401 (716)
Q Consensus       324 ~v~~d~~~~~F~~si~~f~~~~r~vi~iD~T~~~~~y~~~ll~avg~d~~~~~~pla~alv~~-E~~es~~Wfl~-~l~~  401 (716)
                          ......|.      ...-..+++.|-||....-++.++.++-+|...+ .+|||++... .+.+.-.-+|+ .+..
T Consensus       114 ----~~~~~~~~------~~~pN~~W~tDiT~~~~~~g~~~Yl~~ViD~~sR-~ivg~~~s~~~~~~~~v~~~l~~a~~~  182 (301)
T PRK09409        114 ----RAHTGRVA------VKESNQRWCSDGFEFCCDNGERLRVTFALDCCDR-EALHWAVTTGGFNSETVQDVMLGAVER  182 (301)
T ss_pred             ----CCCCCCcC------CCCCCCEEEeeeEEEEeCCCCEEEEEEEeecccc-eEEEEEeccCCCCHHHHHHHHHHHHHH
Confidence                00000110      0123468999999986654556788888888777 6889999875 56555544554 4444


Q ss_pred             Hccc-CCCCCeEEEcCCcch
Q 037776          402 ALRL-DHGEGLCIMGDGDNG  420 (716)
Q Consensus       402 ~~~~-~~~~~~~iitD~~~a  420 (716)
                      ..+. ....|..|.||+...
T Consensus       183 ~~~~~~~~~~~iihSDrGsq  202 (301)
T PRK09409        183 RFGNDLPSSPVEWLTDNGSC  202 (301)
T ss_pred             HhccCCCCCCcEEecCCCcc
Confidence            4321 123477889999874

>PF04684 BAF1_ABF1: BAF1 / ABF1 chromatin reorganising factor; InterPro: IPR006774 ABF1 is a sequence-specific DNA binding protein involved in transcription activation, gene silencing and initiation of DNA replication

Probab=91.13  E-value=0.4  Score=52.46  Aligned_cols=58  Identities=12%  Similarity=0.303  Sum_probs=51.6

Q ss_pred             cCCCcEECCHHHHHHHHHHHHHHcCceEEEEeecC-eEEEEEeccCCCceEEEEEEecC
Q 037776          163 LYHGQRFRDVSHFRKAIEVFAIRDGFKLCVMENRA-HAVSYECSDLRCDWKIKAERVVN  220 (716)
Q Consensus       163 l~vG~~F~s~ee~k~ai~~yAi~~gf~~~~~kS~~-~r~~~~C~~~gCpwri~as~~~~  220 (716)
                      -..+..|++.++-+.+|+.|..+.+..|..+.|-+ +.|+|.|.-..|||+|..+..+.
T Consensus        22 ~~~~~~f~tl~~wy~v~ndyefq~rcpiilknsh~nkhftfachlk~c~fkillsy~g~   80 (496)
T PF04684_consen   22 SAQARKFPTLEAWYNVINDYEFQSRCPIILKNSHRNKHFTFACHLKNCPFKILLSYCGN   80 (496)
T ss_pred             cccccCCCcHHHHHHHHhhhhhhhcCceeecccccccceEEEeeccCCCceeeeeeccc
Confidence            45578899999999999999999999999988865 78999999999999999987543

ABF1 is known to remodel chromatin, and it is proposed that it mediates its effects on transcription and gene expression by modifying local chromatin architecture []. These functions require a conserved stretch of 20 amino acids in the C-terminal region of ABF1 (amino acids 639 to 662 Saccharomyces cerevisiae (P14164 from SWISSPROT)) []. The N-terminal two thirds of the protein are necessary for DNA binding, and the N terminus (amino acids 9 to 91 in S. cerevisiae) is thought to contain a novel zinc-finger motif which may stabilise the protein structure [].; GO: 0003677 DNA binding, 0006338 chromatin remodeling, 0005634 nucleus

>COG3316 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=89.17  E-value=6.1  Score=39.58  Aligned_cols=119  Identities=13%  Similarity=0.075  Sum_probs=80.0

Q ss_pred             HHHHHhCcccCHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHhCCCcEEEEEeccCcCchhhhHHHHHhcCccEEE
Q 037776          271 EIKATYGVVCHEAKLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEERTSYAFKNHCRRLLA  350 (716)
Q Consensus       271 ~l~~~~g~~~s~~k~~rak~~a~~~~~g~~~~sy~~L~~y~~~l~~~NPg~~~~v~~d~~~~~F~~si~~f~~~~r~vi~  350 (716)
                      .+....|+.+.+.++.|.=++.              -+.|...+.+.++.                        -++++.
T Consensus        33 e~l~~rgi~v~h~Ti~rwv~k~--------------~~~~~~~~~~r~~~------------------------~~~~w~   74 (215)
T COG3316          33 EMLAERGIEVDHETIHRWVQKY--------------GPLLARRLKRRKRK------------------------AGDSWR   74 (215)
T ss_pred             HHHHHcCcchhHHHHHHHHHHH--------------hHHHHHHhhhhccc------------------------ccccee
Confidence            3455678888888887764432              12333444444332                        346778


Q ss_pred             EeCceeccccCceeEEEEEEcCCCceEEEEEEEeecCCchhHHHHHHHHHHHcccCCCCCeEEEcCCcchHHHHHHhhcc
Q 037776          351 VDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWVFFIKNINNALRLDHGEGLCIMGDGDNGIDYAIEEFLP  430 (716)
Q Consensus       351 iD~T~~~~~y~~~ll~avg~d~~~~~~pla~alv~~E~~es~~Wfl~~l~~~~~~~~~~~~~iitD~~~al~~Ai~~vfP  430 (716)
                      +|-||.+.+-+.. +.--++|.+  ..+|-+-|...-+...=.-||..+++..    ..|.+|+||+.+....|+.++-+
T Consensus        75 vDEt~ikv~gkw~-ylyrAid~~--g~~Ld~~L~~rRn~~aAk~Fl~kllk~~----g~p~v~vtDka~s~~~A~~~l~~  147 (215)
T COG3316          75 VDETYIKVNGKWH-YLYRAIDAD--GLTLDVWLSKRRNALAAKAFLKKLLKKH----GEPRVFVTDKAPSYTAALRKLGS  147 (215)
T ss_pred             eeeeEEeeccEee-ehhhhhccC--CCeEEEEEEcccCcHHHHHHHHHHHHhc----CCCceEEecCccchHHHHHhcCc
Confidence            8888887543332 222344555  4467777877777777777777777665    47889999999999999999988


Q ss_pred             cccc
Q 037776          431 KAVY  434 (716)
Q Consensus       431 ~a~h  434 (716)
                      .+.|
T Consensus       148 ~~eh  151 (215)
T COG3316         148 EVEH  151 (215)
T ss_pred             chhe
Confidence            7777

>PF13565 HTH_32: Homeodomain-like domain

Probab=84.53  E-value=2  Score=35.47  Aligned_cols=40  Identities=8%  Similarity=0.183  Sum_probs=34.1

Q ss_pred             HHHHHhhhhhcCCCCCHHHHHHHHHHHhCccc--CHHHHHHH
Q 037776          249 ISAIYLHRWKLQPNLRTVDIKDEIKATYGVVC--HEAKLLCA  288 (716)
Q Consensus       249 ia~~~~~~i~~~~~~~~~~I~~~l~~~~g~~~--s~~k~~ra  288 (716)
                      +...+.+.+..+|.+++.+|...|.+.+|+.+  |.+++||.
T Consensus        35 ~~~~i~~~~~~~p~wt~~~i~~~L~~~~g~~~~~S~~tv~R~   76 (77)
T PF13565_consen   35 QRERIIALIEEHPRWTPREIAEYLEEEFGISVRVSRSTVYRI   76 (77)
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHhCCCCCccHhHHHHh
Confidence            44566677788999999999999999999876  99999874

>PF15288 zf-CCHC_6: Zinc knuckle

Probab=83.98  E-value=0.45  Score=34.10  Aligned_cols=15  Identities=7%  Similarity=0.091  Sum_probs=13.1

Q ss_pred             eeCCcCCcCCCCCCC
Q 037776          696 RQCIENNSDAATNNP  710 (716)
Q Consensus       696 ~~Cs~C~~~GHn~~~  710 (716)
                      ++|+.|++.||.+.-
T Consensus         2 ~kC~~CG~~GH~~t~   16 (40)
T PF15288_consen    2 VKCKNCGAFGHMRTN   16 (40)
T ss_pred             ccccccccccccccC
Confidence            699999999998753

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=80.62  E-value=2.8  Score=32.69  Aligned_cols=46  Identities=15%  Similarity=0.305  Sum_probs=24.7

Q ss_pred             cCceEEEEeecCeEEEEEeccC---CCceEEEEEEecCcceEEEEEecCcccc
Q 037776          186 DGFKLCVMENRAHAVSYECSDL---RCDWKIKAERVVNGRTFIVTEFVAQHKC  235 (716)
Q Consensus       186 ~gf~~~~~kS~~~r~~~~C~~~---gCpwri~as~~~~~~~w~V~~~~~~HtC  235 (716)
                      .|+.|...+.........|..-   +|+++|...  .  +.-.|.....+|||
T Consensus        14 ~Gy~y~~~~~~~~~~~WrC~~~~~~~C~a~~~~~--~--~~~~~~~~~~~HnH   62 (62)
T PF04500_consen   14 DGYRYYFNKRNDGKTYWRCSRRRSHGCRARLITD--A--GDGRVVRTNGEHNH   62 (62)
T ss_dssp             TTEEEEEEEE-SS-EEEEEGGGTTS----EEEEE------TTEEEE-S---SS
T ss_pred             CCeEEECcCCCCCcEEEEeCCCCCCCCeEEEEEE--C--CCCEEEECCCccCC
Confidence            4777877776688889999873   899999987  1  22345555578887

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	716
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.5 bits (143), Expect = 3e-09
 Identities = 79/515 (15%), Positives = 141/515 (27%), Gaps = 181/515 (35%)

Query: 105 CSDDDDESQEENNDEE-DQIEGYSSENDKGCMYRL---------------------TDYE 142
           C D  D  +   + EE D I    S++      RL                      +Y+
Sbjct: 35  CKDVQDMPKSILSKEEIDHI--IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK 92

Query: 143 TPCHVGEW----FKFE-NPPRHKMILYHGQR---FRDVSHFRK-----AIEVFAIRDGFK 189
                  +     K E   P     +Y  QR   + D   F K           +R    
Sbjct: 93  -------FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145

Query: 190 LCVMENRAHAVSYECSDLRCDWKIKAERVV------NGRTFIVTEFVAQHKCTRRHQQFQ 243
                           +LR      A+ V+      +G+T++  +    +K      +  
Sbjct: 146 ----------------ELR-----PAKNVLIDGVLGSGKTWVALDVCLSYK---VQCKMD 181

Query: 244 HRSKWISAIYLHRWKLQPNLRTVDIKDEIKATYGVVCHEAKLLCAAKRAKHILGMDHEDG 303
            +  W+            NL+  +  + +           + L            DH   
Sbjct: 182 FKIFWL------------NLKNCNSPETVLE-------MLQKLLYQIDPNWTSRSDHSSN 222

Query: 304 YAI-LNQFKDEMERINSRNIVLLETKRHEYG--------EERTSYAFKNHCRRLL----- 349
             + ++  + E+ R       LL++K +E            +   AF   C+ LL     
Sbjct: 223 IKLRIHSIQAELRR-------LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275

Query: 350 ----AVDGWKINN-----------PYNSVMLVAAALDGNNGILPIAFCEVH--------- 385
                +      +           P     L+   LD     LP      +         
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAE 335

Query: 386 --VEDLDSWVFFIKNINNALRLDHGEGLCIMGDGDNGIDYAIEEFLPKAVYRQC--CLKI 441
              + L +W  + K++N   +L       +               L  A YR+    L +
Sbjct: 336 SIRDGLATWDNW-KHVNCD-KLTTIIESSL-------------NVLEPAEYRKMFDRLSV 380

Query: 442 FTEMVKRFPTAPVEHFFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSWALFTI 501
           F       PT  +    W     +        ++ +H  S      L++      +  +I
Sbjct: 381 FPPSAH-IPTILLS-LIWFDVIKSDVMVV---VNKLHKYS------LVEKQPKE-STISI 428

Query: 502 PKWVKCICVTLSITDKLRN--YLHQYLEMSIASRY 534
           P       + L +  KL N   LH+    SI   Y
Sbjct: 429 PS------IYLELKVKLENEYALHR----SIVDHY 453

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 3e-07
 Identities = 82/586 (13%), Positives = 151/586 (25%), Gaps = 197/586 (33%)

Query: 3   EDKQSGVVDR-KRQTRQKNGG----STKQTINKTSPEYIRTHSCGSRLRGNSANDTD--- 54
             KQ  +V +   +  + N        K    + S           RL  ++        
Sbjct: 72  LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131

Query: 55  -RPEQLLKTKCRRMRRKIARELFPSNS---HSNEQCNKHSRTGM-GC-KTQMPTGRCSDD 108
            R +  LK       R+   EL P+ +               G+ G  KT +    C   
Sbjct: 132 SRLQPYLK------LRQALLELRPAKNVLID-----------GVLGSGKTWVALDVCLSY 174

Query: 109 DDESQEEN----------NDEEDQIE-----------GYSSENDKGCMYRLTDYETPCHV 147
             + + +           N  E  +E            ++S +D     +L  +     +
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 148 GEWFKFENPPRHKMILYHGQRFRDVSHFRKAIEVFAI--------RD-----------GF 188
               K +      ++L       +V +  KA   F +        R              
Sbjct: 235 RRLLKSKPYENCLLVL------LNVQN-AKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287

Query: 189 KLCVMENR------------AHAVSYECSDLRCDWKIKAERVVNGRTF---IVTEFVAQH 233
            + +  +                +     DL          V+        I+ E +   
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP-------REVLTTNPRRLSIIAESIRDG 340

Query: 234 KCTRRHQQFQHRSKW-----ISAIYLHRWKLQPNLRTVDIKDEIKATY---GV----VCH 281
                   ++H +       I +       L+P         E +  +    V       
Sbjct: 341 LA--TWDNWKHVNCDKLTTIIESSLNV---LEP--------AEYRKMFDRLSVFPPSAHI 387

Query: 282 EAKLLCAAKRAKHIL--GMDHEDGYAILNQF-------KDEMERINSRNIVLLETKRHEY 332
              LL        ++   +   D   ++N+        K   E   S   + LE K    
Sbjct: 388 PTILLS-------LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL- 439

Query: 333 GEERTSYAFKNHCRRLL-------AVDGWKINNP------YNSVM--LVAAALDGNNGIL 377
            E   +     H R ++         D   +  P      Y+ +   L          + 
Sbjct: 440 -ENEYAL----H-RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493

Query: 378 PIAFCEVHVEDLDSWVFFIKNINNALRLDHGEGLCIMGDGDNGI-------DY------- 423
            + F      D      F++     +R D        G   N +        Y       
Sbjct: 494 RMVFL-----DFR----FLEQ---KIRHD-STAWNASGSILNTLQQLKFYKPYICDNDPK 540

Query: 424 ------AIEEFLPKAVYRQCCLKIFTEMVKRFPTAPVEHFFWSACR 463
                 AI +FLPK      C K +T++++    A  E  F  A +
Sbjct: 541 YERLVNAILDFLPKIEENLICSK-YTDLLRIALMAEDEAIFEEAHK 585

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 2e-06
 Identities = 60/482 (12%), Positives = 133/482 (27%), Gaps = 166/482 (34%)

Query: 241 QFQHRSKWISAIYLHRWKLQPNLRTVDIKDEIKATYGVVCHEAKLLCAAKRAKHILGMDH 300
           + Q++ K I +++   +    N    D++D  K+             + +   HI+    
Sbjct: 13  EHQYQYKDILSVFEDAFV--DNFDCKDVQDMPKSIL-----------SKEEIDHIIMSKD 59

Query: 301 ED-------------GYAILNQFKDEMERINSRNIVLLETKRHEYGEERTSYAFKNHCRR 347
                             ++ +F +E+ RIN +   L+   + E  +           R 
Sbjct: 60  AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK--FLMSPIKTEQRQPSMMTRMYIEQR- 116

Query: 348 LLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVHVEDLDSWVFFIKNINNAL-RLD 406
                    +  YN   +               F + +V  L         +  AL  L 
Sbjct: 117 ---------DRLYNDNQV---------------FAKYNVSRLQP----YLKLRQALLELR 148

Query: 407 HGEGLCIMGDGDNG---------IDYAIEEFLPKAVY-----RQCCLKIFTEMVKRFPTA 452
             + + I G   +G         + Y ++  +   ++          +   EM+++    
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 453 PVEHFFWSACRSTSATSFN------KYMDLIHNES-EECHDWLLQTD--WSSWAL--FTI 501
            ++  + S    +S           +   L+ ++  E C   LL      ++ A   F +
Sbjct: 209 -IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC---LLVLLNVQNAKAWNAFNL 264

Query: 502 PKWVKCICVTLSITDKLRNYLHQYLEMSIASRYVAIARLTAELFERRRMEVWNWYREKVT 561
                  C  L  T                 R+  +                    + ++
Sbjct: 265 S------CKILLTT-----------------RFKQVT-------------------DFLS 282

Query: 562 PTVREVIKDRTIDGQRFVLVEENGNRLKLIDTTSIIFYLNMEAQSCSCGLRQKSGIPCAH 621
                     ++D     L  +    L       ++ YL+   Q           +P   
Sbjct: 283 AATT---THISLDHHSMTLTPDEVKSL-------LLKYLDCRPQD----------LP-RE 321

Query: 622 ACKGIQLIMGNVEEYVDNMMSVQNFCSMYVPGMMPFPEKHAWKWAACNKLLPPMIESVNT 681
                   +  + E + + ++  +                 WK   C+KL   +  S+N 
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDN----------------WKHVNCDKLTTIIESSLNV 365

Query: 682 LS 683
           L 
Sbjct: 366 LE 367

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	716
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	89.31
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	88.43
3hot_A	345	Transposable element mariner, complete CDS; protei	87.4

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=89.31  E-value=0.73  Score=37.26  Aligned_cols=48  Identities=19%  Similarity=0.358  Sum_probs=37.9

Q ss_pred             EEEeecC-eEEEEEeccCCCceEEEEEEecCcceEEEEEecCccccccc
Q 037776          191 CVMENRA-HAVSYECSDLRCDWKIKAERVVNGRTFIVTEFVAQHKCTRR  238 (716)
Q Consensus       191 ~~~kS~~-~r~~~~C~~~gCpwri~as~~~~~~~w~V~~~~~~HtC~~~  238 (716)
                      +.++.++ -|--++|+..+|+.+-.+.+........+++|..+|||+..
T Consensus        29 K~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p   77 (78)
T 1wj2_A           29 KVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   77 (78)
T ss_dssp             ECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             cccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence            3334433 46669999999999999998877777788899999999864

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=88.43  E-value=0.79  Score=36.86  Aligned_cols=41  Identities=22%  Similarity=0.408  Sum_probs=35.4

Q ss_pred             eEEEEEeccCCCceEEEEEEecCcceEEEEEecCccccccc
Q 037776          198 HAVSYECSDLRCDWKIKAERVVNGRTFIVTEFVAQHKCTRR  238 (716)
Q Consensus       198 ~r~~~~C~~~gCpwri~as~~~~~~~w~V~~~~~~HtC~~~  238 (716)
                      -|--++|+..||+.+=.+.+..+.....++++..+|||...
T Consensus        34 PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p   74 (76)
T 2ayd_A           34 PRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP   74 (76)
T ss_dssp             CEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCC
T ss_pred             ceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCC
Confidence            35569999999999999998777777888999999999864

>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*

Probab=87.40  E-value=13  Score=38.37  Aligned_cols=59  Identities=12%  Similarity=0.164  Sum_probs=38.9

Q ss_pred             ccCceeEEEEEEcCCCceEEEEEEEee---cCCchhHHHHHHHHHHHcc--cCC----CCCeEEEcCCcch
Q 037776          359 PYNSVMLVAAALDGNNGILPIAFCEVH---VEDLDSWVFFIKNINNALR--LDH----GEGLCIMGDGDNG  420 (716)
Q Consensus       359 ~y~~~ll~avg~d~~~~~~pla~alv~---~E~~es~~Wfl~~l~~~~~--~~~----~~~~~iitD~~~a  420 (716)
                      .+.+.++++.+.+..|   .+++.++.   .-+.+.|.-+|+.+...+.  .+.    ..+.+|+.|....
T Consensus       186 ~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~~~y~~~L~~~~~~~~~~~p~~~~~~~~~~~~~Dna~~  253 (345)
T 3hot_A          186 RFGKKTMLCVWWDQSG---VIYYELLKPGETVNAARYQQQLINLNRALQRKRPEYQKRQHRVIFLHDNAPS  253 (345)
T ss_dssp             TTCCEEEEEEEEESSS---EEEEEEECSSCCCCHHHHHHHHHHHHHHHHHHSTTCC---CCCEEECCCCTT
T ss_pred             CcCCcEEEEEEEcccC---ceeeEecCCCCcccHHHHHHHHHHHHHHHHHhchhhhcCCCceEEEECCCCc
Confidence            3556677777777777   56777776   4577788888877655432  011    3477899999653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	716
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	92.34
d1nc8a_	29	HIV nucleocapsid {Human immunodeficiency virus typ	89.31

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.34  E-value=0.13  Score=38.93  Aligned_cols=41  Identities=20%  Similarity=0.383  Sum_probs=35.6

Q ss_pred             eEEEEEeccCCCceEEEEEEecCcceEEEEEecCccccccc
Q 037776          198 HAVSYECSDLRCDWKIKAERVVNGRTFIVTEFVAQHKCTRR  238 (716)
Q Consensus       198 ~r~~~~C~~~gCpwri~as~~~~~~~w~V~~~~~~HtC~~~  238 (716)
                      .|.-++|+..+|+++=.+-+..+.....++++..+|||++.
T Consensus        30 pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~P   70 (71)
T d1wj2a_          30 PRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   70 (71)
T ss_dssp             CEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             ceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCC
Confidence            46678999999999999998877778888899999999764

>d1nc8a_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency virus type 2 [TaxId: 11709]}

class: Small proteins
fold: Retrovirus zinc finger-like domains
superfamily: Retrovirus zinc finger-like domains
family: Retrovirus zinc finger-like domains
domain: HIV nucleocapsid
species: Human immunodeficiency virus type 2 [TaxId: 11709]

Probab=89.31  E-value=0.066  Score=32.20  Aligned_cols=18  Identities=6%  Similarity=0.281  Sum_probs=15.2

Q ss_pred             CCCeeeCCcCCcCCCCCC
Q 037776          692 SSRARQCIENNSDAATNN  709 (716)
Q Consensus       692 ~k~~~~Cs~C~~~GHn~~  709 (716)
                      .++.++|-+|+..||.-+
T Consensus         3 qr~~ikCfNCGkeGH~ar   20 (29)
T d1nc8a_           3 QRKVIRCWNCGKEGHSAR   20 (29)
T ss_dssp             CCCCCBCTTTSCBSSCGG
T ss_pred             CcceeEeecCCccchhhh
Confidence            457789999999999754