Citrus Sinensis ID: 037786
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 565 | 2.2.26 [Sep-21-2011] | |||||||
| O49545 | 1003 | Leucine-rich repeat recep | no | no | 0.865 | 0.487 | 0.337 | 1e-44 | |
| Q9C9H7 | 847 | Receptor-like protein 12 | no | no | 0.929 | 0.619 | 0.289 | 1e-44 | |
| Q9M2Z1 | 1002 | Leucine-rich repeat recep | no | no | 0.863 | 0.487 | 0.332 | 9e-44 | |
| C0LGQ5 | 1249 | LRR receptor-like serine/ | no | no | 0.927 | 0.419 | 0.317 | 8e-43 | |
| Q9LVP0 | 1102 | Probable leucine-rich rep | no | no | 0.872 | 0.447 | 0.319 | 7e-42 | |
| Q9FL28 | 1173 | LRR receptor-like serine/ | no | no | 0.899 | 0.433 | 0.319 | 7e-42 | |
| O65440 | 992 | Leucine-rich repeat recep | no | no | 0.916 | 0.522 | 0.311 | 9e-41 | |
| O49318 | 1124 | Probable leucine-rich rep | no | no | 0.915 | 0.459 | 0.310 | 3e-40 | |
| Q9FIZ3 | 1252 | LRR receptor-like serine/ | no | no | 0.925 | 0.417 | 0.300 | 1e-39 | |
| O82318 | 960 | Probably inactive leucine | no | no | 0.849 | 0.5 | 0.323 | 2e-39 |
| >sp|O49545|BAME1_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1 | Back alignment and function desciption |
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Score = 181 bits (459), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 180/533 (33%), Positives = 260/533 (48%), Gaps = 44/533 (8%)
Query: 37 LTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPR--SNWTSPLRCLDVSGTR 94
L +LSL+ I G P I LS L+ + L N+ +G FP S+ LR LDV
Sbjct: 95 LQNLSLAENLISGPIPPEISSLSGLRHLNLS-NNVFNGSFPDEISSGLVNLRVLDVYNNN 153
Query: 95 FSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNL 154
+G LP S+ NL LR LHL F G +P S G+ + L++S G IPP + NL
Sbjct: 154 LTGDLPVSVTNLTQLRHLHLGGNYFAGKIPPSYGSWPVIEYLAVSGNELVGKIPPEIGNL 213
Query: 155 HQLTDVDLG-SNSF-DGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNN 212
L ++ +G N+F DG P+I NL+ + R D +N LTG IP LQ L L L N
Sbjct: 214 TTLRELYIGYYNAFEDGLPPEIGNLSELVRFDGANCGLTGEIPPEIGKLQKLDTLFLQVN 273
Query: 213 TLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDA-FPS-KSLRKLYLTNNRLHGSIPSSIFE 270
SG + L TL L+ +DLS+N TG + A F K+L L L N+LHG IP I +
Sbjct: 274 VFSGPLTWELGTLSSLKSMDLSNNMFTGEIPASFAELKNLTLLNLFRNKLHGEIPEFIGD 333
Query: 271 LANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLS 330
L L L L NNF+G + P L + L ++LS N L+ + S +++L
Sbjct: 334 LPELEVLQLWENNFTGSI-PQKLGENGKLNLVDLSSNKLTGTLPPNMCSGNKLETLITLG 392
Query: 331 ACNISAFPSFLRSLE-LAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIP 389
+ P L E L + + EN ++G IP ++ + K L+ ++L N+++ ++P
Sbjct: 393 NFLFGSIPDSLGKCESLTRIRMGENFLNGSIPKGLFGLPK--LTQVELQDNYLS--GELP 448
Query: 390 WK-----NLKYLKLQSNLLQGPLPVPPPR---LQFLLASNNQFTGEIIQSICSSSTLEIP 441
NL + L +N L GPLP +Q LL N+F G I
Sbjct: 449 VAGGVSVNLGQISLSNNQLSGPLPPAIGNFTGVQKLLLDGNKFQGPI------------- 495
Query: 442 SWISEIGK-DSLSYLNLSHNFITK--MKQIS-WKNLGYLDLRSNLLQGPLLVPPSSLRVI 497
SE+GK LS ++ SHN + +IS K L ++DL N L G + ++++++
Sbjct: 496 --PSEVGKLQQLSKIDFSHNLFSGRIAPEISRCKLLTFVDLSRNELSGEIPNEITAMKIL 553
Query: 498 LILN---NQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSPWCQTKW 547
LN N G I SI + +L LD S N LSG +P G FS + T +
Sbjct: 554 NYLNLSRNHLVGSIPGSISSMQSLTSLDFSYNNLSGLVPGT-GQFSYFNYTSF 605
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Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 181 bits (459), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 186/642 (28%), Positives = 292/642 (45%), Gaps = 117/642 (18%)
Query: 5 LVQNVTKLQLLFLDYVDMSTV-----VPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLS 59
L N + +L +L ++D++ +P +L NLS LT ++L + + GE P +I L+
Sbjct: 100 LKTNSSLFKLQYLRHLDLTNCNLYGEIPSSLGNLSH-LTLVNLYFNKFVGEIPASIGNLN 158
Query: 60 NLQMVRLKFNSNLSGVFPRS-NWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCN 118
L+ + L N+ L+G P S S L L++ R G++PDSI +L+ LR L L+ N
Sbjct: 159 QLRHLILA-NNVLTGEIPSSLGNLSRLVNLELFSNRLVGKIPDSIGDLKQLRNLSLASNN 217
Query: 119 FYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFP-DIMNL 177
G +P+SLGN++ L L L+ G +P S+ NL +L + +NS G P NL
Sbjct: 218 LIGEIPSSLGNLSNLVHLVLTHNQLVGEVPASIGNLIELRVMSFENNSLSGNIPISFANL 277
Query: 178 TRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQ 237
T++S +S+N T + P S NL + N+ SG P L +P L I L +NQ
Sbjct: 278 TKLSIFVLSSNNFTSTFPFDMSIFHNLEYFDVSYNSFSGPFPKSLLLIPSLESIYLQENQ 337
Query: 238 LTGHLD---AFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLA 294
TG ++ S L+ L L NRLHG IP SI L NL L ++ NNF+G + P ++
Sbjct: 338 FTGPIEFANTSSSTKLQDLILGRNRLHGPIPESISRLLNLEELDISHNNFTGAIPP-TIS 396
Query: 295 KLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLEL-AYLDLSE 353
KLVNL L+LS N+L +V + ++ + LS + S+F + + L LDL+
Sbjct: 397 KLVNLLHLDLSKNNLE----GEVPACLWRLNTMVLSHNSFSSFENTSQEEALIEELDLNS 452
Query: 354 NNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKN----LKYLKLQSNLLQGPLP- 408
N+ G IP + ++ +L FLDLS+N + +N +K L L N G LP
Sbjct: 453 NSFQGPIPYMICKLS--SLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNFSGTLPD 510
Query: 409 --VPPPRLQFLLASNNQFTGEIIQSICSSSTLEI------------PSWI---------- 444
L L S+NQ G+ +S+ + LE+ PSW+
Sbjct: 511 IFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWLESLPSLHVLN 570
Query: 445 --------------SEIGKDSLSYLNLSHN------------------------------ 460
+ IG SL +++SHN
Sbjct: 571 LRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEEMDQYMTE 630
Query: 461 -------FITKMKQIS----------WKNLGYLDLRSNLLQGPLLVPPS-----SLRVIL 498
+ +M+ ++ ++ +D N + G +P S LRV+
Sbjct: 631 FWRYADSYYHEMEMVNKGVDMSFERIRRDFRAIDFSGNKINGN--IPESLGYLKELRVLN 688
Query: 499 ILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFS 540
+ N FT I + ++ L+ LD+S N+LSG IP+ + S
Sbjct: 689 LSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALS 730
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Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 178 bits (452), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 178/535 (33%), Positives = 258/535 (48%), Gaps = 47/535 (8%)
Query: 37 LTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPR--SNWTSPLRCLDVSGTR 94
L +LSL+ +I G P I L L+ + L N+ +G FP S+ LR LD+
Sbjct: 95 LQNLSLAANQISGPIPPQISNLYELRHLNLS-NNVFNGSFPDELSSGLVNLRVLDLYNNN 153
Query: 95 FSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNL 154
+G LP S+ NL LR LHL F G +PA+ G L L++S +G IPP + NL
Sbjct: 154 LTGDLPVSLTNLTQLRHLHLGGNYFSGKIPATYGTWPVLEYLAVSGNELTGKIPPEIGNL 213
Query: 155 HQLTDVDLG-SNSFD-GQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNN 212
L ++ +G N+F+ G P+I NL+ + R D +N LTG IP LQ L L L N
Sbjct: 214 TTLRELYIGYYNAFENGLPPEIGNLSELVRFDAANCGLTGEIPPEIGKLQKLDTLFLQVN 273
Query: 213 TLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPS--KSLRKLYLTNNRLHGSIPSSIFE 270
+GTI L + L+ +DLS+N TG + S K+L L L N+L+G+IP I E
Sbjct: 274 AFTGTITQELGLISSLKSMDLSNNMFTGEIPTSFSQLKNLTLLNLFRNKLYGAIPEFIGE 333
Query: 271 LANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLS 330
+ L L L NNF+G + P L + L L+LS N L+ + S + +++L
Sbjct: 334 MPELEVLQLWENNFTGSI-PQKLGENGRLVILDLSSNKLTGTLPPNMCSGNRLMTLITLG 392
Query: 331 ACNISAFPSFLRSLE-LAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIP 389
+ P L E L + + EN ++G IP ++ + K LS ++L N++T I
Sbjct: 393 NFLFGSIPDSLGKCESLTRIRMGENFLNGSIPKELFGLPK--LSQVELQDNYLTGELPIS 450
Query: 390 W----KNLKYLKLQSNLLQGPLPVPPPRL---QFLLASNNQFTGEIIQSICSSSTLEIPS 442
+L + L +N L G LP L Q LL N+F+G I
Sbjct: 451 GGGVSGDLGQISLSNNQLSGSLPAAIGNLSGVQKLLLDGNKFSGSI-------------- 496
Query: 443 WISEIGK-DSLSYLNLSHNFITK--MKQIS-WKNLGYLDLRSNLLQGPLLVPPSSLRVIL 498
EIG+ LS L+ SHN + +IS K L ++DL N L G + P+ L +
Sbjct: 497 -PPEIGRLQQLSKLDFSHNLFSGRIAPEISRCKLLTFVDLSRNELSGDI---PNELTGMK 552
Query: 499 ILN------NQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSPWCQTKW 547
ILN N G I +I + +L +D S N LSG +P G FS + T +
Sbjct: 553 ILNYLNLSRNHLVGSIPVTIASMQSLTSVDFSYNNLSGLVPST-GQFSYFNYTSF 606
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Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 175 bits (444), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 189/595 (31%), Positives = 275/595 (46%), Gaps = 71/595 (11%)
Query: 4 ALVQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQM 63
A + + L++L L ++ +P L +S L LSL ++QG P+++ L NLQ
Sbjct: 233 AELGRLENLEILNLANNSLTGEIPSQLGEMSQ-LQYLSLMANQLQGLIPKSLADLGNLQT 291
Query: 64 VRLKFNSNLSGVFPRSNWT-SPLRCLDVSGTRFSGQLPDSIC-NLRHLRELHLSQCNFYG 121
+ L N NL+G P W S L L ++ SG LP SIC N +L +L LS G
Sbjct: 292 LDLSAN-NLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSG 350
Query: 122 FLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQF-PDIMNLTRI 180
+P L L L LS S +G IP +L L +LTD+ L +N+ +G P I NLT +
Sbjct: 351 EIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNL 410
Query: 181 SRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG 240
L + +N L G +P S L+ L VL LY N SG IP + L+ ID+ N G
Sbjct: 411 QWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEG 470
Query: 241 HLDAFPS----KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKL 296
+ PS K L L+L N L G +P+S+ L L LA N SG + P L
Sbjct: 471 EIP--PSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSI-PSSFGFL 527
Query: 297 VNLAALELSHNSL---------SFGTTSKVNSSFPQIFILSLSACNISAFPSF------- 340
L L L +NSL S +++N S ++ C S++ SF
Sbjct: 528 KGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGF 587
Query: 341 --------LRSLELAYLDLSENNIDGQIPNWMWEVGK-DTLSFLDLSHNFITE---MKQI 388
S L L L +N + G+IP W +GK LS LD+S N +T ++ +
Sbjct: 588 EDEIPLELGNSQNLDRLRLGKNQLTGKIP---WTLGKIRELSLLDMSSNALTGTIPLQLV 644
Query: 389 PWKNLKYLKLQSNLLQGPLPVPP-----PRLQFLLASNNQFTGEIIQSICSSSTL----- 438
K L ++ L +N L GP +PP +L L S+NQF + + + + L
Sbjct: 645 LCKKLTHIDLNNNFLSGP--IPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSL 702
Query: 439 -------EIPSWISEIGKDSLSYLNLSHN-FITKMKQISWK--NLGYLDLRSNLLQGPLL 488
IP I +G +L+ LNL N F + Q K L L L N L G +
Sbjct: 703 DGNSLNGSIPQEIGNLG--ALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIP 760
Query: 489 VPPSSLR----VILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNF 539
V L+ + + N FTG+I +I + L+ LDLS+N+L+G +P +G+
Sbjct: 761 VEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDM 815
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Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 172 bits (436), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 176/551 (31%), Positives = 261/551 (47%), Gaps = 58/551 (10%)
Query: 6 VQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVR 65
+ + L+ L L Y +S +P + N SSL L L+ + GE P I +L +L+ +
Sbjct: 93 IGGLVHLKQLDLSYNGLSGKIPKEIGN-CSSLEILKLNNNQFDGEIPVEIGKLVSLENL- 150
Query: 66 LKFNSNLSGVFPR--SNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFL 123
+ +N+ +SG P N S L L SGQLP SI NL+ L Q G L
Sbjct: 151 IIYNNRISGSLPVEIGNLLS-LSQLVTYSNNISGQLPRSIGNLKRLTSFRAGQNMISGSL 209
Query: 124 PASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFP-DIMNLTRISR 182
P+ +G L +L L+ SG +P + L +L+ V L N F G P +I N T +
Sbjct: 210 PSEIGGCESLVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPREISNCTSLET 269
Query: 183 LDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGH- 241
L + NQL G IP LQ+L L LY N L+GTIP + L +ID S+N LTG
Sbjct: 270 LALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENALTGEI 329
Query: 242 -LDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLA 300
L+ + L LYL N+L G+IP + L NL+ L L+ N +G + P L L
Sbjct: 330 PLELGNIEGLELLYLFENQLTGTIPVELSTLKNLSKLDLSINALTGPI-PLGFQYLRGLF 388
Query: 301 ALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISA-FPSFL-RSLELAYLDLSENNIDG 358
L+L NSLS GT + +++L +S ++S PS+L + L+L NN+ G
Sbjct: 389 MLQLFQNSLS-GTIPPKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNNLSG 447
Query: 359 QIPNWMWEVGKDTLSFLDLSHNFITE------MKQIPWKNLKYLKLQSNLLQGPLPVPP- 411
IP + TL L L+ N + KQ+ N+ ++L N +G +P
Sbjct: 448 NIPTGITTC--KTLVQLRLARNNLVGRFPSNLCKQV---NVTAIELGQNRFRGSIPREVG 502
Query: 412 --PRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQIS 469
LQ L ++N FTGE+ + I +S++G LN+S N +T
Sbjct: 503 NCSALQRLQLADNGFTGELPREI---------GMLSQLGT-----LNISSNKLTG----- 543
Query: 470 WKNLGYLDLRSNLLQGPLLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLS 529
++ S + +L R+ + NN F+G + + + L++L LSNN LS
Sbjct: 544 -------EVPSEIFNCKMLQ-----RLDMCCNN-FSGTLPSEVGSLYQLELLKLSNNNLS 590
Query: 530 GTIPKCIGNFS 540
GTIP +GN S
Sbjct: 591 GTIPVALGNLS 601
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 172 bits (435), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 178/557 (31%), Positives = 273/557 (49%), Gaps = 49/557 (8%)
Query: 28 GTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRS-NWTSPLR 86
GTL NL T L LS ++ G+ P + L NLQ + L N L G P S L
Sbjct: 213 GTLANL----TDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENL-LEGDIPAEIGNCSSLV 267
Query: 87 CLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGH 146
L++ + +G++P + NL L+ L + + +P+SL +TQL L LS G
Sbjct: 268 QLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGP 327
Query: 147 IPPSLSNLHQLTDVDLGSNSFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLA 205
I + L L + L SN+F G+FP I NL ++ L + N ++G +P+ L NL
Sbjct: 328 ISEEIGFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGLLTNLR 387
Query: 206 VLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHL-DAFPSKSLRKLYLTNNRLHGSI 264
L ++N L+G IPS + L+ +DLS NQ+TG + F +L + + N G I
Sbjct: 388 NLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFISIGRNHFTGEI 447
Query: 265 PSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQI 324
P IF +NL LS+A NN +G ++P ++ KL L L++S+NSL+ G + + +
Sbjct: 448 PDDIFNCSNLETLSVADNNLTGTLKP-LIGKLQKLRILQVSYNSLT-GPIPREIGNLKDL 505
Query: 325 FILSLSACNISA-FPSFLRSLEL-AYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFI 382
IL L + + P + +L L L + N+++G IP M+++ LS LDLS+N
Sbjct: 506 NILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDM--KLLSVLDLSNNKF 563
Query: 383 TEMKQIP-----WKNLKYLKLQSNLLQGPLPVPPPRLQFLLA---SNNQFTGEIIQSICS 434
+ QIP ++L YL LQ N G +P L L S+N TG I + +
Sbjct: 564 S--GQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLA 621
Query: 435 S-----------STLEIPSWISEIGK-DSLSYLNLSHNF----ITKMKQISWKNLGYLDL 478
S + L + E+GK + + ++LS+N I + Q + KN+ LD
Sbjct: 622 SLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQ-ACKNVFTLDF 680
Query: 479 RSNLLQGPLLVPPS---SLRVILILN---NQFTGEIIHSICDIIALDVLDLSNNRLSGTI 532
N L G +P + +I+ LN N F+GEI S ++ L LDLS+N L+G I
Sbjct: 681 SQNNLSGH--IPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEI 738
Query: 533 PKCIGNFSPWCQTKWPS 549
P+ + N S K S
Sbjct: 739 PESLANLSTLKHLKLAS 755
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Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|O65440|BAME3_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana GN=BAM3 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 168 bits (426), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 178/572 (31%), Positives = 262/572 (45%), Gaps = 54/572 (9%)
Query: 3 EALVQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQ 62
+ L Q++T+L L +++S + + LS SL L +S GE P+ I+ LS L+
Sbjct: 72 DNLNQSITRLDL---SNLNISGTISPEISRLSPSLVFLDISSNSFSGELPKEIYELSGLE 128
Query: 63 MVRLKFNSNLSGVFPRS-NWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYG 121
++ + N + R + + L LD F+G LP S+ L L L L F G
Sbjct: 129 VLNISSNVFEGELETRGFSQMTQLVTLDAYDNSFNGSLPLSLTTLTRLEHLDLGGNYFDG 188
Query: 122 FLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLG-SNSFDGQFP-DIMNLTR 179
+P S G+ L LSLS G IP L+N+ L + LG N + G P D L
Sbjct: 189 EIPRSYGSFLSLKFLSLSGNDLRGRIPNELANITTLVQLYLGYYNDYRGGIPADFGRLIN 248
Query: 180 ISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLT 239
+ LD++N L GSIP+ L+NL VL L N L+G++P L + L+ +DLS+N L
Sbjct: 249 LVHLDLANCSLKGSIPAELGNLKNLEVLFLQTNELTGSVPRELGNMTSLKTLDLSNNFLE 308
Query: 240 GHLDAFPSKSLRKLYLTN---NRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKL 296
G + L+KL L N NRLHG IP + EL +L L L NNF+G + P L
Sbjct: 309 GEI-PLELSGLQKLQLFNLFFNRLHGEIPEFVSELPDLQILKLWHNNFTGKI-PSKLGSN 366
Query: 297 VNLAALELSHN--------SLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLE-LA 347
NL ++LS N SL FG K+ F P L E L
Sbjct: 367 GNLIEIDLSTNKLTGLIPESLCFGRRLKILILFNNFL--------FGPLPEDLGQCEPLW 418
Query: 348 YLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFIT------EMKQIPWKNLKYLKLQSN 401
L +N + ++P + + LS L+L +NF+T E + +L + L +N
Sbjct: 419 RFRLGQNFLTSKLPKGLIYL--PNLSLLELQNNFLTGEIPEEEAGNAQFSSLTQINLSNN 476
Query: 402 LLQGPLPVPPPR---LQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLS 458
L GP+P LQ LL N+ +G+I I S +L K +S N S
Sbjct: 477 RLSGPIPGSIRNLRSLQILLLGANRLSGQIPGEIGSLKSLL---------KIDMSRNNFS 527
Query: 459 HNFITKMKQISWKNLGYLDLRSNLLQGPLLVPPSSLRVILILN---NQFTGEIIHSICDI 515
F + +L YLDL N + G + V S +R++ LN N F + + + +
Sbjct: 528 GKFPPEFGDC--MSLTYLDLSHNQISGQIPVQISQIRILNYLNVSWNSFNQSLPNELGYM 585
Query: 516 IALDVLDLSNNRLSGTIPKCIGNFSPWCQTKW 547
+L D S+N SG++P G FS + T +
Sbjct: 586 KSLTSADFSHNNFSGSVPTS-GQFSYFNNTSF 616
|
Necessary for male gametophyte development, as well as ovule specification and function. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 166 bits (421), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 188/606 (31%), Positives = 273/606 (45%), Gaps = 89/606 (14%)
Query: 15 LFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSG 74
L L +++S +V ++ L + L L+L+Y + G+ P I S L+++ L N+ G
Sbjct: 90 LDLSSMNLSGIVSPSIGGLVN-LVYLNLAYNALTGDIPREIGNCSKLEVMFLN-NNQFGG 147
Query: 75 VFPRS-NWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQL 133
P N S LR ++ + SG LP+ I +L +L EL N G LP SLGN+ +L
Sbjct: 148 SIPVEINKLSQLRSFNICNNKLSGPLPEEIGDLYNLEELVAYTNNLTGPLPRSLGNLNKL 207
Query: 134 AVLSLSFKSFSGHIPPSLSN------------------------LHQLTDVDLGSNSFDG 169
FSG+IP + L +L +V L N F G
Sbjct: 208 TTFRAGQNDFSGNIPTEIGKCLNLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFSG 267
Query: 170 QFP-DIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLL 228
P DI NLT + L + N L G IPS +++L L LY N L+GTIP L L +
Sbjct: 268 FIPKDIGNLTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKV 327
Query: 229 RDIDLSDNQLTGHLDAFPSK--SLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSG 286
+ID S+N L+G + SK LR LYL N+L G IP+ + +L NL L L+ N+ +G
Sbjct: 328 MEIDFSENLLSGEIPVELSKISELRLLYLFQNKLTGIIPNELSKLRNLAKLDLSINSLTG 387
Query: 287 IVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISA-FPSFL-RSL 344
+ P L ++ L+L HNSLS G + + ++++ S +S P F+ +
Sbjct: 388 PIPP-GFQNLTSMRQLQLFHNSLS-GVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQQS 445
Query: 345 ELAYLDLSENNIDGQIPNWMWEVGKDTLSFL----DLSHNFITEMKQIPWKNLKYLKLQS 400
L L+L N I G IP + K L L+ F TE+ ++ NL ++L
Sbjct: 446 NLILLNLGSNRIFGNIPPGVLRC-KSLLQLRVVGNRLTGQFPTELCKL--VNLSAIELDQ 502
Query: 401 NLLQGPLPVP---PPRLQFLLASNNQFTGEIIQSICSSSTL------------EIPSWIS 445
N GPLP +LQ L + NQF+ + I S L IPS I+
Sbjct: 503 NRFSGPLPPEIGTCQKLQRLHLAANQFSSNLPNEISKLSNLVTFNVSSNSLTGPIPSEIA 562
Query: 446 ---------------------EIGK-DSLSYLNLSHNFITKMKQISWKNLGY---LDLRS 480
E+G L L LS N + + NL + L +
Sbjct: 563 NCKMLQRLDLSRNSFIGSLPPELGSLHQLEILRLSENRFSGNIPFTIGNLTHLTELQMGG 622
Query: 481 NLLQGPLLVPP-----SSLRVILILN-NQFTGEIIHSICDIIALDVLDLSNNRLSGTIPK 534
NL G +PP SSL++ + L+ N F+GEI I ++ L L L+NN LSG IP
Sbjct: 623 NLFSGS--IPPQLGLLSSLQIAMNLSYNDFSGEIPPEIGNLHLLMYLSLNNNHLSGEIPT 680
Query: 535 CIGNFS 540
N S
Sbjct: 681 TFENLS 686
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 164 bits (416), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 179/596 (30%), Positives = 279/596 (46%), Gaps = 73/596 (12%)
Query: 4 ALVQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQM 63
A + + LQ L L S +P L +L S + L+L ++QG P+ + L+NLQ
Sbjct: 234 AELNRLKNLQTLNLGDNSFSGEIPSQLGDLVS-IQYLNLIGNQLQGLIPKRLTELANLQT 292
Query: 64 VRLKFNSNLSGVFPRSNW-TSPLRCLDVSGTRFSGQLPDSIC-NLRHLRELHLSQCNFYG 121
+ L N NL+GV W + L L ++ R SG LP +IC N L++L LS+ G
Sbjct: 293 LDLSSN-NLTGVIHEEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSG 351
Query: 122 FLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD-IMNLTRI 180
+PA + N L +L LS + +G IP SL L +LT++ L +NS +G I NLT +
Sbjct: 352 EIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSISNLTNL 411
Query: 181 SRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG 240
+ +N L G +P L L ++ LY N SG +P + L++ID N+L+G
Sbjct: 412 QEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSG 471
Query: 241 HLDAFPS-----KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAK 295
+ PS K L +L+L N L G+IP+S+ +T + LA N SG + P
Sbjct: 472 EI---PSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGSI-PSSFGF 527
Query: 296 LVNLAALELSHNSL---------SFGTTSKVNSSFPQIFILSLSA-CNISAFPSF----- 340
L L + +NSL + +++N S + F S+S C S++ SF
Sbjct: 528 LTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNK-FNGSISPLCGSSSYLSFDVTEN 586
Query: 341 ----------LRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIP- 389
+S L L L +N G+IP ++ + LS LD+S N ++ + +
Sbjct: 587 GFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISE--LSLLDISRNSLSGIIPVEL 644
Query: 390 --WKNLKYLKLQSNLLQGPLPV---PPPRLQFLLASNNQFTGEIIQSICSSSTL------ 438
K L ++ L +N L G +P P L L S+N+F G + I S + +
Sbjct: 645 GLCKKLTHIDLNNNYLSGVIPTWLGKLPLLGELKLSSNKFVGSLPTEIFSLTNILTLFLD 704
Query: 439 ------EIPSWISEIGKDSLSYLNLSHNFIT-----KMKQISWKNLGYLDLRSNLLQGPL 487
IP I + +L+ LNL N ++ + ++S L L L N L G +
Sbjct: 705 GNSLNGSIPQEIGNL--QALNALNLEENQLSGPLPSTIGKLS--KLFELRLSRNALTGEI 760
Query: 488 LVPPSSLR----VILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNF 539
V L+ + + N FTG I +I + L+ LDLS+N+L G +P IG+
Sbjct: 761 PVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPGQIGDM 816
|
Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|O82318|Y2579_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 OS=Arabidopsis thaliana GN=At2g25790 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 164 bits (414), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 179/553 (32%), Positives = 264/553 (47%), Gaps = 73/553 (13%)
Query: 28 GTLKNLSSSLTSLSLSYCRIQGE-FPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSP-- 84
G + N S + SL LS + G+ FRL LQ + L N+NLSG P +T+
Sbjct: 65 GVVCNNISRVVSLDLSGKNMSGQILTAATFRLPFLQTINLS-NNNLSGPIPHDIFTTSSP 123
Query: 85 -LRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSF 143
LR L++S FSG +P GFLP L L LS F
Sbjct: 124 SLRYLNLSNNNFSGSIP-------------------RGFLP-------NLYTLDLSNNMF 157
Query: 144 SGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIM-NLTRISRLDISNNQLTGSIPSHGSGLQ 202
+G I + L +DLG N G P + NL+R+ L +++NQLTG +P ++
Sbjct: 158 TGEIYNDIGVFSNLRVLDLGGNVLTGHVPGYLGNLSRLEFLTLASNQLTGGVPVELGKMK 217
Query: 203 NLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPS----KSLRKLYLTNN 258
NL + L N LSG IP + L L +DL N L+G + PS K L ++L N
Sbjct: 218 NLKWIYLGYNNLSGEIPYQIGGLSSLNHLDLVYNNLSGPIP--PSLGDLKKLEYMFLYQN 275
Query: 259 RLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVN 318
+L G IP SIF L NL L + N+ SG + P ++A++ +L L L N+L+ G +
Sbjct: 276 KLSGQIPPSIFSLQNLISLDFSDNSLSGEI-PELVAQMQSLEILHLFSNNLT-GKIPEGV 333
Query: 319 SSFPQIFILSLSACNISA-FPSFL-RSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLD 376
+S P++ +L L + S P+ L + L LDLS NN+ G++P+ + + G L+ L
Sbjct: 334 TSLPRLKVLQLWSNRFSGGIPANLGKHNNLTVLDLSTNNLTGKLPDTLCDSGH--LTKLI 391
Query: 377 LSHNFITEMKQIP-----WKNLKYLKLQSNLLQGPLPVPPPRLQ---FLLASNNQFTG-- 426
L N + QIP ++L+ ++LQ+N G LP +LQ FL SNN G
Sbjct: 392 LFSNSLDS--QIPPSLGMCQSLERVRLQNNGFSGKLPRGFTKLQLVNFLDLSNNNLQGNI 449
Query: 427 --------EIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM---KQISWKNLGY 475
E++ + E+P + L L+LS N I+ + +++ +
Sbjct: 450 NTWDMPQLEMLDLSVNKFFGELPDFSRS---KRLKKLDLSRNKISGVVPQGLMTFPEIMD 506
Query: 476 LDLRSNLLQGPLLVPPSSLRVILILN---NQFTGEIIHSICDIIALDVLDLSNNRLSGTI 532
LDL N + G + SS + ++ L+ N FTGEI S + L LDLS N+LSG I
Sbjct: 507 LDLSENEITGVIPRELSSCKNLVNLDLSHNNFTGEIPSSFAEFQVLSDLDLSCNQLSGEI 566
Query: 533 PKCIGNFSPWCQT 545
PK +GN Q
Sbjct: 567 PKNLGNIESLVQV 579
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 565 | ||||||
| 356551688 | 1135 | PREDICTED: receptor-like protein 12-like | 0.952 | 0.474 | 0.427 | 1e-108 | |
| 225462116 | 1001 | PREDICTED: receptor-like protein 12-like | 0.872 | 0.492 | 0.418 | 4e-96 | |
| 224116970 | 921 | predicted protein [Populus trichocarpa] | 0.904 | 0.554 | 0.438 | 8e-90 | |
| 357493471 | 1109 | Receptor-like protein kinase [Medicago t | 0.861 | 0.439 | 0.398 | 2e-88 | |
| 357493485 | 1060 | Receptor-like protein kinase [Medicago t | 0.854 | 0.455 | 0.399 | 6e-88 | |
| 225459979 | 979 | PREDICTED: receptor-like protein 12-like | 0.886 | 0.511 | 0.412 | 7e-86 | |
| 357493407 | 994 | Receptor-like protein kinase [Medicago t | 0.879 | 0.5 | 0.400 | 2e-85 | |
| 359493539 | 1001 | PREDICTED: receptor-like protein 12-like | 0.874 | 0.493 | 0.405 | 3e-85 | |
| 147804670 | 1004 | hypothetical protein VITISV_022039 [Viti | 0.890 | 0.500 | 0.401 | 6e-85 | |
| 359493546 | 985 | PREDICTED: LRR receptor-like serine/thre | 0.874 | 0.501 | 0.390 | 5e-84 |
| >gi|356551688|ref|XP_003544206.1| PREDICTED: receptor-like protein 12-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 246/575 (42%), Positives = 349/575 (60%), Gaps = 37/575 (6%)
Query: 1 VMEALVQNVTKLQLLFLDYVDMSTVVPGTLK---NLSSSLTSLSLSYCRIQGEFPENIFR 57
+E ++ N T ++ L LD+++MST+ P +L N SSSL SLSL +QG+ NI
Sbjct: 176 TLENVIVNATDIRELTLDFLNMSTIEPSSLSLLVNFSSSLVSLSLRDTGLQGKLANNILC 235
Query: 58 LSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQC 117
L NLQ + L N +L G P N ++PLR LD+S T FSG+LP++I +L L L C
Sbjct: 236 LPNLQKLDLSVNLDLQGELPEFNRSTPLRYLDLSYTGFSGKLPNTINHLESLNYLSFESC 295
Query: 118 NFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMN- 176
+F G +P L N+ QL L L +FSG IP SLSNL LT +DL N+F G+ PD+ +
Sbjct: 296 DFGGPIPVFLSNLMQLKHLDLGGNNFSGEIPSSLSNLKHLTFLDLSVNNFGGEIPDMFDK 355
Query: 177 ------------------------LTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNN 212
LT++S LD S N+L G +P SGL NL L L N
Sbjct: 356 LSKIEYLCISGNNLVGQLPSSLFGLTQLSDLDCSYNKLVGPMPDKISGLSNLCSLDLSTN 415
Query: 213 TLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELA 272
+++GTIP W F+L L + L NQLTG + F S SL L+ N+L G+IP+S+F L
Sbjct: 416 SMNGTIPHWCFSLSSLIQLSLHGNQLTGSIGEFSSFSLYYCDLSYNKLQGNIPNSMFHLQ 475
Query: 273 NLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNS---LSFGTTSKVNSSFPQIFILSL 329
NLT+LSL+SNN +G V+ + + + L L+LS N+ LSF T + +F + L L
Sbjct: 476 NLTWLSLSSNNLTGHVDFHKFSNMQFLEILDLSDNNFLYLSFNNTEG-DYNFLNLQYLYL 534
Query: 330 SACNISAFPSFLRSLE-LAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMK-- 386
S+CNI++FP L L+ L LDLS N I G+IP W GKDTLSFLDLSHN +T +
Sbjct: 535 SSCNINSFPKLLSGLKYLNSLDLSRNQIHGKIPKWFNSTGKDTLSFLDLSHNLLTSVGYL 594
Query: 387 QIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISE 446
+ W ++Y+ L N+LQG +PVPP +++ SNN+ TG I +IC++S+L+IP W +
Sbjct: 595 SLSWATMQYIDLSFNMLQGDIPVPPSGIEYFSVSNNKLTGRISSTICNASSLQIPKWFNS 654
Query: 447 IGKDSLSYLNLSHNFITKMK--QISWKNLGYLDLRSNLLQGPLLVPPSSLRVILILNNQF 504
GKD+LS+L+LSHN +T + +SW + Y+DL N+LQG + VPPS + + NN+
Sbjct: 655 TGKDTLSFLDLSHNLLTSVGYLSLSWATMQYIDLSFNMLQGDIPVPPSGIEYFSVSNNKL 714
Query: 505 TGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNF 539
TG I +IC+ +L +L+LS+N L+G +P+C+G F
Sbjct: 715 TGRISSTICNASSLQILNLSHNNLTGKLPQCLGTF 749
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225462116|ref|XP_002263233.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 358 bits (919), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 236/564 (41%), Positives = 320/564 (56%), Gaps = 71/564 (12%)
Query: 4 ALVQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQM 63
AL +N+TKLQ L L +++S+++P SSL S+ LS C++ G FP++ +L NL++
Sbjct: 182 ALARNLTKLQKLHLRGINVSSILP-ISLLNLSSLRSMDLSSCQLYGRFPDDDLQLPNLKV 240
Query: 64 VRLKFNSNLSGVFPRSNWTSP------------------------LRCLDVSGTRFSGQL 99
++LK N +LSG FP+ N ++ L LD+S T+FSG+L
Sbjct: 241 LKLKGNHDLSGNFPKFNESNSMLLLDLSSTNFSGELPSSIGILKSLESLDLSSTKFSGEL 300
Query: 100 PDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTD 159
P SI +L+ L L LS CNF G +P+ LGN+TQ+ L LS F G I + + +L
Sbjct: 301 PSSIGSLKSLESLDLSHCNFSGSIPSVLGNLTQITHLDLSRNQFDGEISNVFNKIRKLIV 360
Query: 160 VDLGSNSFDGQF-PDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTI 218
+DL SNSF GQF + NLT +S LD+SNN L G IPSH L +L+ + L NN L+GTI
Sbjct: 361 LDLSSNSFRGQFIASLDNLTELSFLDLSNNNLEGIIPSHVKELSSLSDIHLSNNLLNGTI 420
Query: 219 PSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLS 278
PSWLF+LP L +DLS N+L GH+D F S SL + L++N L G +PSSIFEL NLTYL
Sbjct: 421 PSWLFSLPSLIRLDLSHNKLNGHIDEFQSPSLESIDLSSNELDGPVPSSIFELVNLTYLQ 480
Query: 279 LASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFP 338
L+SNN GIVE M L NL L+LS+N L+ S N + P + L LS+CNIS FP
Sbjct: 481 LSSNNLGGIVETDMFMNLENLVYLDLSYNILTLSNYSHSNCALPFLETLLLSSCNISEFP 540
Query: 339 SFLRSLE-LAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLK 397
FL S E L +LDLS N I GQ+P W W +G +TLS+ +LS N +T ++ PWKN+ +L
Sbjct: 541 RFLCSQEVLEFLDLSNNKIYGQLPKWAWNMGTETLSYFNLSQNLLTRFERFPWKNMLFLD 600
Query: 398 LQSNLLQGPLPVPPPRLQFLLA---SNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSY 454
L SNLLQGPLP + ++ SNN +G I Q + + S
Sbjct: 601 LHSNLLQGPLPSLICEMSYISVLDFSNNNLSGLIPQCLGNFS------------------ 642
Query: 455 LNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLLVPPSSLRVILILN-----NQFTGEII 509
++L LDLR N L G +P + + I N NQ G +
Sbjct: 643 ----------------ESLSVLDLRMNQLHGN--IPETFSKGNFIRNLGFNGNQLEGPLP 684
Query: 510 HSICDIIALDVLDLSNNRLSGTIP 533
S+ + L VLDL NNR++ T P
Sbjct: 685 RSLINCRRLQVLDLGNNRINDTFP 708
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224116970|ref|XP_002331797.1| predicted protein [Populus trichocarpa] gi|222874493|gb|EEF11624.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 337 bits (865), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 236/538 (43%), Positives = 327/538 (60%), Gaps = 27/538 (5%)
Query: 1 VMEALVQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSN 60
M+ +VQN+T ++ +FLDY++MS+V G+L NLSSSLTSLSL+ C +QG+FPENIF L N
Sbjct: 117 AMKMIVQNLTLVREIFLDYINMSSVDLGSLMNLSSSLTSLSLNLCGLQGQFPENIFHLPN 176
Query: 61 LQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFY 120
LQ++ L NS+L G P SNW+S L L + T FSG LP+ I NL ++ L L C FY
Sbjct: 177 LQLLSLLLNSDLYGRLPVSNWSSSLELLKLGSTSFSGGLPEIIGNLDSIKVLDLGNCAFY 236
Query: 121 GFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFP-DIMNLTR 179
G +PASLGN+ QL L LS +++G IP NL +L + L +F G P + NLT
Sbjct: 237 GSVPASLGNLQQLNQLDLSNNNWTGQIPDVFGNLSKLNSLSLQVGNFSGMLPSSVFNLTE 296
Query: 180 ISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLT 239
+ RLD+S NQL G++P H GL N+ L L N LSGTIPS LF LP L +L++N LT
Sbjct: 297 LLRLDLSQNQLEGTLPDHICGLDNVTYLDLSYNLLSGTIPSCLFGLPSLVWFNLNNNHLT 356
Query: 240 GHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNL 299
G L N+++G IP SI EL NLT ++SNN SGIV+ + + + NL
Sbjct: 357 GELGEHC-----------NKINGLIPPSISELVNLTNFDVSSNNLSGIVDLNLFSNMKNL 405
Query: 300 AALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLR-SLELAYLDLSENNIDG 358
L+LSHNSLS T + NS++PQ + L+LS+CNI FP FL+ +L +L LS N I G
Sbjct: 406 WGLDLSHNSLSVVTNNNRNSTWPQFYKLALSSCNIIEFPDFLKIQNQLNFLSLSHNRIHG 465
Query: 359 QIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLL 418
+IP W+ G +L +LDLSHNF+T + ++P +L+YL L SNLLQ P P+ P + LL
Sbjct: 466 EIPKWLSAKGMQSLQYLDLSHNFLTIVNELP-PSLQYLDLTSNLLQQPFPILPQSMYILL 524
Query: 419 ASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLGYLDL 478
+NN+ TGEI IC+ +T +I +LS +LS N + S L L+L
Sbjct: 525 IANNKLTGEIPPWICNITTFQI---------INLSNNSLSGNIPQCLGNFS-TELSVLNL 574
Query: 479 RSNLLQGPL---LVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIP 533
RSN G + + +R + + N+ G + S+ + L+VLDL NN ++ + P
Sbjct: 575 RSNSFHGTIPGSFTEGNKIRSLDLNGNELEGSLPLSLANCKMLEVLDLGNNYINDSFP 632
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357493471|ref|XP_003617024.1| Receptor-like protein kinase [Medicago truncatula] gi|355518359|gb|AES99982.1| Receptor-like protein kinase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 333 bits (854), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 227/570 (39%), Positives = 310/570 (54%), Gaps = 83/570 (14%)
Query: 1 VMEALVQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCR---IQGEFPENIFR 57
+ + L+ N T L+ L L+ VDMS++ +L L + +SL R +QG +I
Sbjct: 123 IWKKLIHNATNLRELHLNSVDMSSITESSLSMLKNLSSSLVSLSLRKTELQGNLSSDILS 182
Query: 58 LSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQC 117
L NLQ + L FN NLSG P+SNW++PLR L++ + FSG++P SI L+ L +L LS C
Sbjct: 183 LPNLQRLDLSFNQNLSGQLPKSNWSTPLRYLNLRLSAFSGEIPYSIGQLKSLTQLVLSDC 242
Query: 118 NFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIM-N 176
N G +P SL N+TQL L LSF +G I P LSNL L DLG N+F G P + N
Sbjct: 243 NLDGMVPLSLWNLTQLTYLDLSFNKLNGEISPLLSNLKHLIHCDLGFNNFSGSIPIVYGN 302
Query: 177 LTRISRLDISNNQLTGSIPSHGSGLQNLAVLRL-YN-----------------------N 212
L ++ L + N LTG +PS L +L+ L L YN N
Sbjct: 303 LIKLEYLSLYFNNLTGQVPSSLFHLPHLSHLYLAYNKLVGPIPIEIAKRSKLRYVGLDDN 362
Query: 213 TLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELA 272
L+GTIP W ++LP L ++ LSDN LTG + F + SL+ LYL NN L G P+SIF+L
Sbjct: 363 MLNGTIPHWCYSLPSLLELYLSDNNLTGFIGEFSTYSLQSLYLFNNNLQGHFPNSIFQLQ 422
Query: 273 NLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNS-LSFGTTSKVNSSFPQIFILSLSA 331
NLTYL L+S N SG+V+ + +KL L++L+LSHNS LS S +S P + L LS+
Sbjct: 423 NLTYLDLSSTNLSGVVDFHQFSKLNKLSSLDLSHNSFLSINIDSSADSILPNLESLYLSS 482
Query: 332 CNISAFPSFL-RSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPW 390
NI +FP FL R L +LDLS NNI G+IP W + +T W
Sbjct: 483 ANIKSFPKFLARVHNLQWLDLSNNNIHGKIPKWFHKKLLNT------------------W 524
Query: 391 KNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKD 450
K+++Y+ L N+LQG LP+PP + + L SNN FTG I SST S
Sbjct: 525 KDIRYIDLSFNMLQGHLPIPPDGIVYFLLSNNNFTGNI------SSTFRNAS-------- 570
Query: 451 SLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLLVPPSSLRVILILNNQFTGEIIH 510
SL LNL+HN QG L +PPS ++ + NN FTG I
Sbjct: 571 SLYTLNLAHNN---------------------FQGDLPIPPSGIKYFSLSNNNFTGYISS 609
Query: 511 SICDIIALDVLDLSNNRLSGTIPKCIGNFS 540
+ C+ +L +LDL++N L+G IP+C+G +
Sbjct: 610 TFCNASSLYMLDLAHNNLTGMIPQCLGTLT 639
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357493485|ref|XP_003617031.1| Receptor-like protein kinase [Medicago truncatula] gi|355518366|gb|AES99989.1| Receptor-like protein kinase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 331 bits (848), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 226/566 (39%), Positives = 310/566 (54%), Gaps = 83/566 (14%)
Query: 3 EALVQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCR---IQGEFPENIFRLS 59
+ L+ N T L+ L+LD V+MS++ +L L + +SL R +QG +I L
Sbjct: 188 KKLIHNATNLRELYLDNVNMSSIRESSLSMLKNLSSSLVSLSLRDTVLQGNISSDILSLP 247
Query: 60 NLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNF 119
NLQ + L FN NLSG P+SNW++PLR L +S + FSG++P SI L+ L +L LS CNF
Sbjct: 248 NLQRLDLSFNQNLSGQLPKSNWSTPLRYLVLSSSAFSGEIPYSIGQLKSLTQLVLSHCNF 307
Query: 120 YGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIM-NLT 178
G +P SL N+TQL L LS +G I P LSNL L L N+F G P++ NL
Sbjct: 308 DGMVPLSLWNLTQLTHLDLSLNKLNGEISPLLSNLKHLIHCYLAYNNFSGSIPNVYGNLI 367
Query: 179 RISRLDISNNQLTGSIPS------HGSGL------------------QNLAVLRLYNNTL 214
++ L +S+N LTG +PS H S L L+ + L +N L
Sbjct: 368 KLKYLALSSNNLTGQVPSSLFHLPHLSHLYLADNKLVGPIPIEITKRSKLSYVFLDDNML 427
Query: 215 SGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANL 274
+GTIP W ++LP L ++ LSDN LTG + F + SL+ L L+NN L G P+SIF+L NL
Sbjct: 428 NGTIPQWCYSLPSLLELGLSDNHLTGFIGEFSTYSLQSLDLSNNNLQGHFPNSIFQLQNL 487
Query: 275 TYLSLASNNFSGIVEPYMLAKLVNLAALELSHNS-LSFGTTSKVNSSFPQIFILSLSACN 333
TYL L+S N SG+V+ + +KL L L LSHN+ LS S ++S P +F L LS+ N
Sbjct: 488 TYLYLSSTNLSGVVDFHQFSKLNKLWYLVLSHNTFLSINIDSSIDSIIPNLFSLDLSSAN 547
Query: 334 ISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNL 393
I++FP F ++ L LDLS NNI G+IP W F T++ WK++
Sbjct: 548 INSFPKF-QARNLQTLDLSNNNIHGKIPKW-----------------FHTKLLN-SWKDI 588
Query: 394 KYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLS 453
+Y+ L N+LQG LP+PP +Q+ SNN FTG I SST S SL
Sbjct: 589 RYIDLSFNMLQGDLPIPPSGIQYFSLSNNNFTGNI------SSTFRNAS--------SLY 634
Query: 454 YLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLLVPPSSLRVILILNNQFTGEIIHSIC 513
LNL+HN QG L +PPS ++ + NN FTG I + C
Sbjct: 635 TLNLAHNN---------------------FQGDLPIPPSGIQYFSLSNNNFTGYISSTFC 673
Query: 514 DIIALDVLDLSNNRLSGTIPKCIGNF 539
+ +L VLDL++N L G IP+C+G F
Sbjct: 674 NASSLYVLDLAHNNLKGMIPQCLGTF 699
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225459979|ref|XP_002267546.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 324 bits (831), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 224/543 (41%), Positives = 301/543 (55%), Gaps = 42/543 (7%)
Query: 4 ALVQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQM 63
+L+ N+TKLQ L L + +S+V P +L N SSL SL LS C + G F ++ L L++
Sbjct: 186 SLLLNLTKLQKLHLGGISISSVFPNSLLN-QSSLISLDLSDCGLHGSFHDHDIHLPKLEV 244
Query: 64 VRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFL 123
+ L N+ L+G FPR + + L L ++ T FSG+LP SI NL+ L+ L LS C F G +
Sbjct: 245 LNLWGNNALNGNFPRFSENNSLLELVLASTNFSGELPASIGNLKSLKTLDLSICQFLGSI 304
Query: 124 PASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFP-DIMNLTRISR 182
P SL N+ Q+ L+L FSG IP +NL L + L +N+F G FP I NLT +
Sbjct: 305 PTSLENLKQITSLNLIGNHFSGKIPNIFNNLRNLISLGLSNNNFSGHFPPSIGNLTNLYE 364
Query: 183 LDISNNQLTGSIPSHGS--GLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG 240
LD SNNQL G I SH + +L+ + L N +GTIPSWL+TL L +DLS N+LTG
Sbjct: 365 LDFSNNQLEGVIHSHVNEFSFSSLSYVNLGYNLFNGTIPSWLYTLSSLVVLDLSHNKLTG 424
Query: 241 HLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLA 300
H+D F SL +YL N LHG IPSSIF+L NL YL L+SNN S ++E L NL
Sbjct: 425 HIDEFQFDSLENIYLNMNELHGPIPSSIFKLVNLRYLYLSSNNLSEVLETNKFGNLRNLI 484
Query: 301 ALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQI 360
L+LS+N L T+ NS P I LDLS N I G
Sbjct: 485 ELDLSNNMLLLTTSGNSNSILPNI----------------------ESLDLSNNKISGV- 521
Query: 361 PNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLAS 420
W W +G DTL +L+LS+N I+ K +PWKN+ L L SNLLQGPLP PP F S
Sbjct: 522 --WSWNMGNDTLWYLNLSYNSISGFKMLPWKNIGILDLHSNLLQGPLPTPPNSTFFFSVS 579
Query: 421 NNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRS 480
+N+ +GEI IC +S++EI LS NLS + S K L L+LR
Sbjct: 580 HNKLSGEISSLICRASSMEIL---------DLSDNNLSGRLPHCLGNFS-KYLSVLNLRR 629
Query: 481 NLLQGPL---LVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIG 537
N G + + +++R + +NQ G + S+ L+VLDL NN+++ T P +G
Sbjct: 630 NRFHGNIPQTFLKGNAIRDLDFNDNQLDGLVPRSLIICRKLEVLDLGNNKINDTFPHWLG 689
Query: 538 NFS 540
S
Sbjct: 690 TLS 692
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357493407|ref|XP_003616992.1| Receptor-like protein kinase [Medicago truncatula] gi|355518327|gb|AES99950.1| Receptor-like protein kinase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 218/544 (40%), Positives = 303/544 (55%), Gaps = 47/544 (8%)
Query: 3 EALVQNVTKLQLLFLDYVDMSTVVPGTL---KNLSSSLTSLSLSYCRIQGEFPENIFRLS 59
+ L+ N T L+ L L+ VDM ++ +L KN+SSSL SL L +QG I L
Sbjct: 186 KKLIHNATNLRELHLNRVDMYSIRESSLSMLKNVSSSLVSLRLGEIGLQGNLSSAILSLP 245
Query: 60 NLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNF 119
NLQ + L N+ LSG P+SNW++PLR LD+SG FSG++P SI +L++L +L LS CN
Sbjct: 246 NLQRLDLS-NNELSGKLPKSNWSTPLRYLDLSGITFSGEIPKSIGHLKYLTQLVLSYCNL 304
Query: 120 YGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDG--QFPD-IMN 176
G +P SL N+TQL L LS +G I P NL L DLG N F G Q P + +
Sbjct: 305 DGMVPLSLWNLTQLTHLDLSQNKLNGEISPLFLNLKHLIHCDLGYNYFSGNIQVPSSLFH 364
Query: 177 LTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDN 236
L +S LD+S+N+L G IP + L+++ L +N +GTIP W ++LP L ++DL+DN
Sbjct: 365 LPNLSFLDLSSNKLVGPIPVQITKRSKLSIVNLGSNMFNGTIPQWCYSLPSLIELDLNDN 424
Query: 237 QLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKL 296
LTG +D F + SL+ LYL+NN LHG P+SIFEL NLT L L+S N SG+V+ + +KL
Sbjct: 425 HLTGFIDEFSTYSLQSLYLSNNNLHGHFPNSIFELQNLTNLDLSSTNLSGVVDFHQFSKL 484
Query: 297 VNLAALELSHNS-LSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENN 355
L L LSHN LS S V++ P +F L LS NI++FP F ++ L LDLS +N
Sbjct: 485 NRLWYLYLSHNGFLSINIDSSVDTILPNLFSLDLSYANINSFPKF-QARNLESLDLSNSN 543
Query: 356 IDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQ 415
I +IP W K L+ WK++ ++ L N LQG LP+PP ++
Sbjct: 544 IHARIPKWF---HKKLLN---------------SWKDIIHIDLSFNKLQGDLPIPPDGIE 585
Query: 416 FLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLGY 475
L SNN FTG+I + C++S+L I LNL+HN +T M Y
Sbjct: 586 DFLLSNNNFTGDISSTFCNASSLYI--------------LNLAHNNLTGMIPQCLGTFSY 631
Query: 476 ---LDLRSNLLQGPL---LVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLS 529
LD++ N L G + + I + NQ G + + L+VLDL +N +
Sbjct: 632 LSILDMQMNNLCGSIPGTFSKGNIFETIKLNGNQLEGPLPQCLAYCSYLEVLDLGDNNIE 691
Query: 530 GTIP 533
T P
Sbjct: 692 DTFP 695
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359493539|ref|XP_002267388.2| PREDICTED: receptor-like protein 12-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 322 bits (826), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 226/558 (40%), Positives = 300/558 (53%), Gaps = 64/558 (11%)
Query: 4 ALVQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQM 63
+LVQN+TKLQ L L + +S+V P +L N SSL S+ LS C + G FP++ L L++
Sbjct: 186 SLVQNLTKLQKLHLRGISISSVFPNSLLN-RSSLISIDLSGCGLHGRFPDHDIHLPKLEV 244
Query: 64 VRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFL 123
+ L N +LSG FPR + + L LD+S T SG+LP SI NL+ L+ L LS C F GF+
Sbjct: 245 LDLWRNDDLSGNFPRFSENNSLMELDLSFTNLSGELPASIGNLKSLQTLDLSGCEFSGFI 304
Query: 124 PASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFP-DIMNLTRISR 182
S+GN+ L L LS FSG IP S+ NL L +DL F G P I NL +
Sbjct: 305 HTSIGNLKSLQTLDLSGCEFSGFIPTSIGNLKSLQTLDLSDCEFSGSIPTSIGNLKSLQT 364
Query: 183 LDISNNQLTGSIPSHGSGLQ------------------------NLAVLRLYNNTLSGTI 218
LD+SN + GSIP+ L+ NL LR NN +GTI
Sbjct: 365 LDLSNCEFLGSIPTSIGNLKSLRSLYLFSNNFSGQLPPSIGNLTNLQNLRFSNNLFNGTI 424
Query: 219 PSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLS 278
PS L+TLP L ++DLS +LTGH+ F SL + L+ N LHG IPSSIF+LANL +L
Sbjct: 425 PSQLYTLPSLVNLDLSHKKLTGHIGEFQFDSLEYIDLSMNELHGPIPSSIFKLANLEFLY 484
Query: 279 LASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFP 338
L SNN SG++E KL NL L LS+N LS T+ NS P I
Sbjct: 485 LYSNNLSGVLETSNFGKLRNLTLLVLSNNMLSLITSGNSNSILPYI-------------- 530
Query: 339 SFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKL 398
LDLS N I G W W +GKDTL +L+LS+N I+ + +PWKN+ L L
Sbjct: 531 --------ERLDLSNNKISGI---WSWNMGKDTLLYLNLSYNIISGFEMLPWKNMHILDL 579
Query: 399 QSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLS 458
SNLLQGPLP+PP F S+N+ +GEI IC +S +G LS NLS
Sbjct: 580 HSNLLQGPLPIPPNSTFFFSVSHNKLSGEISPLICK---------VSSMGVLDLSSNNLS 630
Query: 459 HNFITKMKQISWKNLGYLDLRSNLLQGPL---LVPPSSLRVILILNNQFTGEIIHSICDI 515
+ S K+L L+LR N G + + +++R + +NQ G + S+
Sbjct: 631 GMLPHCLGNFS-KDLSVLNLRRNRFHGTIPQTFLKGNAIRNLDFNDNQLEGLVPRSLIIY 689
Query: 516 IALDVLDLSNNRLSGTIP 533
L+VLDL NN+++ T P
Sbjct: 690 RKLEVLDLGNNKINDTFP 707
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147804670|emb|CAN66864.1| hypothetical protein VITISV_022039 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 321 bits (823), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 219/545 (40%), Positives = 302/545 (55%), Gaps = 42/545 (7%)
Query: 2 MEALVQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNL 61
+ LVQN+T L+ L L V++ + +P L +LSS + C + GEFP IF+L +L
Sbjct: 191 LRNLVQNLTHLKKLHLSQVNIFSTIPHELASLSSLTSLFLRE-CGLHGEFPMKIFQLPSL 249
Query: 62 QMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYG 121
Q + +++N +L G P TSPL+ L ++GT F G+LP SI +L L EL +S CNF
Sbjct: 250 QYLSVRYNPDLIGYLPEFQETSPLKMLYLAGTSFYGELPASIGSLDSLTELDISSCNFTR 309
Query: 122 FLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFD-GQFPDIMNLTRI 180
P+ L ++ QL++L LS SFSG IP ++NL QLT +DL SN F G + T++
Sbjct: 310 LFPSPLAHIPQLSLLDLSNNSFSGQIPSFMANLTQLTYLDLSSNDFSVGTLAWVGKQTKL 369
Query: 181 SRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG 240
+ L + LTG IPS + L +L L N L G IPSWL L QLT
Sbjct: 370 TYLYLDQMNLTGEIPSSLVNMSELTILSLSRNQLIGQIPSWLMNL----------TQLT- 418
Query: 241 HLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLA 300
+LYL N+L G IPSS+FEL NL L L SN +G VE +ML+KL NL
Sbjct: 419 -----------ELYLEENKLEGPIPSSLFELVNLQSLYLHSNYLTGTVELHMLSKLKNLT 467
Query: 301 ALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSL-ELAYLDLSENNIDGQ 359
L LS N LS + ++ N++ P +L L +CN++ FP FL++ EL L LS+N I G
Sbjct: 468 GLLLSGNRLSLLSYTRTNATLPTFKLLGLGSCNLTEFPDFLQNQDELVVLSLSDNKIHGP 527
Query: 360 IPNWMWEVGKDTLSFLDLSHNFITEMKQ----IPWKNLKYLKLQSNLLQGPLPVPPPRLQ 415
IP W+W + K+TL L LS NF+T Q +PW L L+L N+LQGPLP+PPP
Sbjct: 528 IPKWVWNISKETLEALRLSGNFLTGFDQRPVVLPWSRLYSLQLDFNMLQGPLPIPPPSTI 587
Query: 416 FLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLGY 475
N+ TGEI IC+ S+L++ L+ NLS + S K+L
Sbjct: 588 LYSVYGNKLTGEISPLICNMSSLKLL---------DLARNNLSGRIPQCLANFS-KSLSV 637
Query: 476 LDLRSNLLQGPL---LVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTI 532
LDL SN L GP+ P++LRVI + NQF G+I S + + L+ L L NN++
Sbjct: 638 LDLGSNSLDGPIPQTCTVPNNLRVIDLGENQFRGQIPRSFANCMMLEHLVLGNNQIDDIF 697
Query: 533 PKCIG 537
P +G
Sbjct: 698 PFWLG 702
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359493546|ref|XP_002267585.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 318 bits (815), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 215/551 (39%), Positives = 304/551 (55%), Gaps = 57/551 (10%)
Query: 2 MEALVQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNL 61
++LVQN+TKLQ L L + +S++ P L N +S L SL L + G FP++ L L
Sbjct: 187 FDSLVQNLTKLQKLHLGGISISSIFPKFLLNWAS-LVSLDLLDGALHGRFPDHDIHLPKL 245
Query: 62 QMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYG 121
+++ L++N+ LSG FP+ + + L L +S FSG+LP SI NL+ L+ L L C F G
Sbjct: 246 EVLDLRWNNGLSGTFPQFSENNSLTELYLSSKNFSGELPASIGNLKSLKILVLHNCGFSG 305
Query: 122 FLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRIS 181
+P+S+GN+ L VL++ FSG IP SL NL Q+ + L N F G+ ++N
Sbjct: 306 SIPSSIGNLKSLMVLAMPGCEFSGSIPASLGNLTQIIALHLDRNHFSGKISKVINFFNNF 365
Query: 182 R----LDISNNQLTGSIPSHGSGLQNLAVLRLYNN--TLSGTIPSWLFTLPLLRDIDLSD 235
R L +++N +G +P L NL L +N +GTIPSWL+T+P L +DLS
Sbjct: 366 RNLISLGLASNNFSGQLPPSIGNLTNLQDLYFSDNFNMFNGTIPSWLYTMPSLVQLDLSH 425
Query: 236 NQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAK 295
N+LTGH+ F SL + L+ N LHGSIP SIF+L NL YL L+SNNFSG++E K
Sbjct: 426 NKLTGHIGEFQFDSLEYIDLSMNELHGSIPGSIFKLINLRYLFLSSNNFSGVLETSNFGK 485
Query: 296 LVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENN 355
L NL +L+LS+N LS T+ S P I LDLS NN
Sbjct: 486 LRNLTSLDLSNNMLSLTTSDDSKSMLPYI----------------------ESLDLSNNN 523
Query: 356 IDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQ 415
I G W W +GK+TL +L+LS+N I+ + +PWKNL L L SNLLQGPLP PP
Sbjct: 524 ISGI---WSWNMGKNTLQYLNLSYNLISGFEMLPWKNLYILDLHSNLLQGPLPTPPNSTF 580
Query: 416 FLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKN--- 472
F S+N+ +GEI+ C +S++ I L+LS+N ++ M + N
Sbjct: 581 FFSVSHNKLSGEILSLFCKASSMRI--------------LDLSNNNLSGMLPLCLGNFSK 626
Query: 473 -LGYLDLRSNLLQGPLLVPPSSLRVILILN-----NQFTGEIIHSICDIIALDVLDLSNN 526
L L+L N G ++P + L+ I N NQ G + S+ L+VLDL NN
Sbjct: 627 YLSVLNLGRNRFHG--IIPQTFLKGNAIRNLDFNGNQLEGLLPRSLIICRKLEVLDLGNN 684
Query: 527 RLSGTIPKCIG 537
+++ T P +G
Sbjct: 685 KINDTFPHWLG 695
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 565 | ||||||
| TAIR|locus:2046357 | 890 | RLP23 "receptor like protein 2 | 0.858 | 0.544 | 0.336 | 2.8e-54 | |
| TAIR|locus:2144392 | 957 | RLP53 "receptor like protein 5 | 0.815 | 0.481 | 0.352 | 2e-53 | |
| TAIR|locus:2085537 | 894 | RLP34 "AT3G11010" [Arabidopsis | 0.893 | 0.564 | 0.345 | 2.2e-53 | |
| TAIR|locus:2055772 | 983 | RLP19 "receptor like protein 1 | 0.895 | 0.514 | 0.320 | 5.8e-52 | |
| TAIR|locus:2119445 | 719 | AT4G13820 [Arabidopsis thalian | 0.771 | 0.606 | 0.339 | 8.9e-51 | |
| TAIR|locus:2169965 | 1003 | BAM1 "BARELY ANY MERISTEM 1" [ | 0.835 | 0.470 | 0.344 | 6.7e-49 | |
| TAIR|locus:2074633 | 943 | RLP35 "AT3G11080" [Arabidopsis | 0.902 | 0.540 | 0.337 | 6.8e-49 | |
| TAIR|locus:2078102 | 875 | RLP33 "receptor like protein 3 | 0.812 | 0.524 | 0.339 | 1e-48 | |
| TAIR|locus:2129246 | 891 | RLP50 "receptor like protein 5 | 0.847 | 0.537 | 0.318 | 1.1e-47 | |
| TAIR|locus:2090754 | 711 | RLP43 "receptor like protein 4 | 0.835 | 0.663 | 0.326 | 1.3e-47 |
| TAIR|locus:2046357 RLP23 "receptor like protein 23" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 566 (204.3 bits), Expect = 2.8e-54, P = 2.8e-54
Identities = 178/529 (33%), Positives = 268/529 (50%)
Query: 28 GTLKNXXXXXXXXXXXYCRIQGE------FPENIFRLSNLQMVRLKFNSNLSGVFPRS-- 79
GTLK+ Y +Q P L L+ + L N L G P S
Sbjct: 86 GTLKSNSSLFGFHQLRYVDLQNNNLTSSSLPSGFGNLKRLEGLFLSSNGFL-GQVPSSFS 144
Query: 80 NWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFL-P-ASLGNVTQLAVLS 137
N T L LD+S + +G P + LR L L LS +F G L P +SL + QL L+
Sbjct: 145 NLTM-LAQLDLSYNKLTGSFP-LVRGLRKLIVLDLSYNHFSGTLNPNSSLFELHQLRYLN 202
Query: 138 LSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD-IMNLTRISRLDISNNQLTGSIPS 196
L+F +FS +P NLH+L ++ L SN F GQ P I NLTR+++L + N+LT S P
Sbjct: 203 LAFNNFSSSLPSKFGNLHRLENLILSSNGFSGQVPSTISNLTRLTKLYLDQNKLTSSFPL 262
Query: 197 HGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKL--- 253
L NL L L N G IPS L TLP L + L +N L G ++ S + +L
Sbjct: 263 V-QNLTNLYELDLSYNKFFGVIPSSLLTLPFLAHLALRENNLAGSVEVSNSSTSSRLEIM 321
Query: 254 YLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGT 313
YL +N G I I +L NL +L L+ N S ++ + + L +L +L+LS NS+S +
Sbjct: 322 YLGSNHFEGQILEPISKLINLKHLDLSFLNTSYPIDLKLFSSLKSLRSLDLSGNSISSAS 381
Query: 314 TSKVNSSFP-QIFILSLSACNISAFPSFLRSL-ELAYLDLSENNIDGQIPNWMWEVGKDT 371
S +S P + +L+L C+I+ FP+ L++L EL Y+D+S N + G+IP W+W +
Sbjct: 382 LSS-DSYIPLTLEMLTLRHCDINEFPNILKTLKELVYIDISNNRMKGKIPEWLWSL--PL 438
Query: 372 LSFLDLSHNFITEMKQ----IPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGE 427
L + L +N+ T + + ++ L L SN +G LP P ++ ++N FT E
Sbjct: 439 LQSVTLGNNYFTGFQGSAEILVNSSVLLLYLDSNNFEGALPDLPLSIKGFGVASNSFTSE 498
Query: 428 IIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPL 487
I SIC+ S SL+ ++LS+N T +NL + LR+N L+G +
Sbjct: 499 IPLSICNRS--------------SLAAIDLSYNNFTGPIPPCLRNLELVYLRNNNLEGSI 544
Query: 488 ---LVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIP 533
L +SLR + + +N+ TG++ S + +L L + NNR+ T P
Sbjct: 545 PDALCDGASLRTLDVSHNRLTGKLPRSFVNCSSLKFLSVINNRIEDTFP 593
|
|
| TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 560 (202.2 bits), Expect = 2.0e-53, P = 2.0e-53
Identities = 182/517 (35%), Positives = 268/517 (51%)
Query: 46 RIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRS-NWTSPLRCLDVSGTRFSGQLPDSIC 104
+ G+ P +I LS+L + L +N G FP S S L L + +FSGQ+P SI
Sbjct: 180 QFSGQAPSSICNLSHLTFLDLSYN-RFFGQFPSSIGGLSHLTTLSLFSNKFSGQIPSSIG 238
Query: 105 NLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGS 164
NL +L L LS NF G +P+ +GN++QL L L +F G IP S NL+QLT + +
Sbjct: 239 NLSNLTTLDLSNNNFSGQIPSFIGNLSQLTFLGLFSNNFVGEIPSSFGNLNQLTRLYVDD 298
Query: 165 NSFDGQFPDIM-NLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLF 223
N G FP+++ NLT +S L +SNN+ TG++P + + L NL +N +GT PS+LF
Sbjct: 299 NKLSGNFPNVLLNLTGLSLLSLSNNKFTGTLPPNITSLSNLMDFDASDNAFTGTFPSFLF 358
Query: 224 TLPLLRDIDLSDNQLTGHLD----AFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSL 279
T+P L I L+ NQL G L+ + PS +L +L + NN G IPSSI +L L L +
Sbjct: 359 TIPSLTYIRLNGNQLKGTLEFGNISSPS-NLYELDIGNNNFIGPIPSSISKLVKLFRLDI 417
Query: 280 ASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVN-----SSFPQIFILSLSACNI 334
+ N G V+ + + L +L L +SH TT++++ S F ++ +L LS ++
Sbjct: 418 SHLNTQGPVDFSIFSHLKSLLDLNISH----LNTTTRIDLNYFLSYFKRLLLLDLSGNHV 473
Query: 335 SAFP----SFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIP- 389
SA S S + L LS I + P ++ + L FLD+S+N I Q+P
Sbjct: 474 SATNKSSVSDPPSQLIQSLYLSGCGIT-EFPEFVRT--QHELGFLDISNNKIKG--QVPD 528
Query: 390 --WKN--LKYLKLQSNLLQG-PLPVPP-PRLQFLLASNNQFTGEIIQSICSSSTLEIPSW 443
W+ L Y+ L +N L G P P P L +LL SNN F G+I IC
Sbjct: 529 WLWRLPILYYVNLSNNTLIGFQRPSKPEPSLLYLLGSNNNFIGKIPSFIC---------- 578
Query: 444 ISEIGKDSLSYLNLS-HNF---ITKMKQISWKNLGYLDLRSNLLQGPLLVPPSSLRVILI 499
G SL+ L+LS +NF I + L L+LR N L G L P ++
Sbjct: 579 ----GLRSLNTLDLSDNNFNGSIPRCMGHLKSTLSVLNLRQNHLSGGL--PKQIFEILRS 632
Query: 500 LN---NQFTGEIIHSICDIIALDVLDLSNNRLSGTIP 533
L+ NQ G++ S+ L+VL++ +NR++ T P
Sbjct: 633 LDVGHNQLVGKLPRSLSFFSTLEVLNVESNRINDTFP 669
|
|
| TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 558 (201.5 bits), Expect = 2.2e-53, P = 2.2e-53
Identities = 191/553 (34%), Positives = 277/553 (50%)
Query: 6 VQNVTKLQLLFLDYVDMSTVVPGTLKNXXXXXXXXXXXYCRIQGEFPENIFRLSNLQMVR 65
++N++ L L L Y S + ++ N + + G+ P +I LS+L +
Sbjct: 78 IENLSHLTSLDLSYNRFSGQILNSIGNLSRLTSLDLS-FNQFSGQIPSSIGNLSHLTFLG 136
Query: 66 LKFNSNLSGVFPRSNWT-SPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLP 124
L N G P S S L L +SG RF GQ P SI L +L LHLS + G +P
Sbjct: 137 LSGN-RFFGQIPSSIGNLSHLTFLGLSGNRFFGQFPSSIGGLSNLTNLHLSYNKYSGQIP 195
Query: 125 ASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIM-NLTRISRL 183
+S+GN++QL VL LS +F G IP S NL+QLT +D+ N G FP+++ NLT +S +
Sbjct: 196 SSIGNLSQLIVLYLSVNNFYGEIPSSFGNLNQLTRLDVSFNKLGGNFPNVLLNLTGLSVV 255
Query: 184 DISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLD 243
+SNN+ TG++P + + L NL +N +GT PS+LF +P L + LS NQL G L+
Sbjct: 256 SLSNNKFTGTLPPNITSLSNLMAFYASDNAFTGTFPSFLFIIPSLTYLGLSGNQLKGTLE 315
Query: 244 ----AFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLAS-NNFSGIVEPYMLAKLVN 298
+ PS +L+ L + +N G IPSSI +L NL L ++ N V+ + + L +
Sbjct: 316 FGNISSPS-NLQYLNIGSNNFIGPIPSSISKLINLQELGISHLNTQCRPVDFSIFSHLKS 374
Query: 299 LAALELSHNSLSFGTTSKVNSSFPQIFIL-SL-------SACNISAFPSFLRSLELAYLD 350
L L LS+ + TT +N P L SL SA N S+ S S + L
Sbjct: 375 LDDLRLSYLTT---TTIDLNDILPYFKTLRSLDLSGNLVSATNKSSVSSDPPSQSIQSLY 431
Query: 351 LSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIP-W----KNLKYLKLQSNLLQG 405
LS I P + + L FLD+S+N I Q+P W NL YL L +N G
Sbjct: 432 LSGCGIT-DFPEILRT--QHELGFLDVSNNKIKG--QVPGWLWTLPNLFYLNLSNNTFIG 486
Query: 406 -PLPVPP-PRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFIT 463
P P P + +LL SNN FTG+I IC E+ S + LS N S +
Sbjct: 487 FQRPTKPEPSMAYLLGSNNNFTGKIPSFIC-----ELRSLYTL----DLSDNNFSGSIPR 537
Query: 464 KMKQISWKNLGYLDLRSNLLQGPLLVPP---SSLRVILILNNQFTGEIIHSICDIIALDV 520
M+ + NL L+LR N L G P SLR + + +NQ G++ S+ L+V
Sbjct: 538 CMENLK-SNLSELNLRQNNLSGGF--PEHIFESLRSLDVGHNQLVGKLPRSLRFFSNLEV 594
Query: 521 LDLSNNRLSGTIP 533
L++ +NR++ P
Sbjct: 595 LNVESNRINDMFP 607
|
|
| TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 547 (197.6 bits), Expect = 5.8e-52, P = 5.8e-52
Identities = 176/549 (32%), Positives = 265/549 (48%)
Query: 13 QLLFLDYVDMST-----VVPGTLKNXXXXXXXXXXXYCRIQGEFPENIFRLSNLQMVRLK 67
QL FL +D+S +P +L+ G P +I LS+L V
Sbjct: 110 QLRFLTTLDLSNNDFIGQIPSSLETLSNLTTLDLSRN-HFSGRIPSSIGNLSHLIFVDFS 168
Query: 68 FNSNLSGVFPRS-NWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPAS 126
N N SG P S + S L ++S FSG++P SI NL +L L LS+ +F+G LP+S
Sbjct: 169 HN-NFSGQIPSSLGYLSHLTSFNLSYNNFSGRVPSSIGNLSYLTTLRLSRNSFFGELPSS 227
Query: 127 LGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFP-DIMNLTRISRLDI 185
LG++ L L L F G IP SL NL LT +DL N+F G+ P + NL+ ++ +
Sbjct: 228 LGSLFHLTDLILDTNHFVGKIPSSLGNLSHLTSIDLHKNNFVGEIPFSLGNLSCLTSFIL 287
Query: 186 SNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDA- 244
S+N + G IPS L L +L + +N LSG+ P L L L + L +N+LTG L +
Sbjct: 288 SDNNIVGEIPSSFGNLNQLDILNVKSNKLSGSFPIALLNLRKLSTLSLFNNRLTGTLPSN 347
Query: 245 FPSKSLRKLY-LTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALE 303
S S KL+ T N G +PSS+F + +L ++L +N +G + ++ NL L
Sbjct: 348 MSSLSNLKLFDATENHFTGPLPSSLFNIPSLKTITLENNQLNGSLGFGNISSYSNLTVLR 407
Query: 304 LSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSF-----LRSLELAYLDLSENNIDG 358
L +N+ G + S + L LS N F L+S+E YL+LS N
Sbjct: 408 LGNNNFR-GPIHRSISKLVNLKELDLSNYNTQGLVDFTIFSHLKSIE--YLNLSHLNTTT 464
Query: 359 QIPNWMWEVGKD--TLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQF 416
I M+E+ L LDLS + ++ + N + + L G P+ F
Sbjct: 465 TID--MYEILSSFKLLDTLDLSGSHVSTTNKSSLSNSSLVLISQLYLSGCGITEFPK--F 520
Query: 417 LLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLGYL 476
L + T +I + ++P W+ + L+Y+NLS+N ++ S K LG
Sbjct: 521 LRSQELMLTLDISNNKIKG---QVPGWLWML--PVLNYVNLSNNTFIGFER-STK-LGLT 573
Query: 477 DLRSNLLQGPLLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCI 536
++ PP+ +R + NN FTG I IC++ L LD SNN+ +G+IP C+
Sbjct: 574 SIQE---------PPA-MRQLFCSNNNFTGNIPSFICELPYLSTLDFSNNKFNGSIPTCM 623
Query: 537 GNF-SPWCQ 544
GN SP+ Q
Sbjct: 624 GNIQSPYLQ 632
|
|
| TAIR|locus:2119445 AT4G13820 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 498 (180.4 bits), Expect = 8.9e-51, Sum P(2) = 8.9e-51
Identities = 160/471 (33%), Positives = 239/471 (50%)
Query: 85 LRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFS 144
L LD+ FSG LPDSI +L++LR L L CN +G +P+SLGN+T L L LS F+
Sbjct: 110 LHNLDLGSNNFSGILPDSIGSLKYLRVLSLGDCNLFGKIPSSLGNLTYLTNLDLSVNDFT 169
Query: 145 GHIPPSLSNLHQLTDVDLGSNSFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQN 203
G +P S+ +L++LT++ LGS G FP ++NL+ ++ +D+ +NQ G +PS+ S L
Sbjct: 170 GELPDSMGHLNKLTELHLGSAKLSGNFPSMLLNLSELTLIDLGSNQFGGMLPSNMSSLSK 229
Query: 204 LAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLD----AFPSKSLRKLYLTNNR 259
L + N+ SG+IPS LF LP L + L N G LD + PS +L L L N
Sbjct: 230 LVYFGIDRNSFSGSIPSSLFMLPSLTSLVLGRNDFNGPLDFGNISSPS-NLGVLSLLENN 288
Query: 260 LHGSIPSSIFELANLTYLSLAS-NNFSGIVEPYMLAKLVNLAALELSH-NSLSFGTTSKV 317
+G IP SI +L L YL L+ N G+V+ L +L L+LS+ N+ S S +
Sbjct: 289 FNGPIPESISKLVGLFYLDLSLWNTKRGMVDFNTFLHLKSLTFLDLSYINTRSMVDIS-I 347
Query: 318 NSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDL 377
S + L LS N+ + + L LS NI + PN++ E + TL +LD+
Sbjct: 348 FSPLLSLGYLDLSGINLKISSTLSLPSPMGTLILSSCNIP-EFPNFL-E-NQTTLYYLDI 404
Query: 378 SHNFIT-EMKQIPWK--NLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICS 434
S N I ++ Q W L+Y+ + N G P A Q GE++ S
Sbjct: 405 SANKIGGQVPQWLWSLPELQYVNISQNSFSG---FEGP------ADVIQRCGELLMLDIS 455
Query: 435 SSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWK--NLGYLDLRSNLLQG--PLLVP 490
S+T + P + + + +L + F ++ + K +L L L +N G P
Sbjct: 456 SNTFQDPFPL--LPNSTTIFLGSDNRFSGEIPKTICKLVSLDTLVLSNNNFNGSIPRCFE 513
Query: 491 P--SSLRVILILNNQFTGEIIH-SICDIIALDVLDLSNNRLSGTIPKCIGN 538
++L V+ + NN +GE SI D L LD+ NRLSG +PK + N
Sbjct: 514 KFNTTLSVLHLRNNNLSGEFPEESISD--HLRSLDVGRNRLSGELPKSLIN 562
|
|
| TAIR|locus:2169965 BAM1 "BARELY ANY MERISTEM 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 519 (187.8 bits), Expect = 6.7e-49, P = 6.7e-49
Identities = 178/516 (34%), Positives = 255/516 (49%)
Query: 47 IQGEFPENIFRLSNLQMVRLKFNSNLSGVFPR--SNWTSPLRCLDVSGTRFSGQLPDSIC 104
I G P I LS L+ + L N+ +G FP S+ LR LDV +G LP S+
Sbjct: 105 ISGPIPPEISSLSGLRHLNLS-NNVFNGSFPDEISSGLVNLRVLDVYNNNLTGDLPVSVT 163
Query: 105 NLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGS 164
NL LR LHL F G +P S G+ + L++S G IPP + NL L ++ +G
Sbjct: 164 NLTQLRHLHLGGNYFAGKIPPSYGSWPVIEYLAVSGNELVGKIPPEIGNLTTLRELYIGY 223
Query: 165 -NSF-DGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSW- 221
N+F DG P+I NL+ + R D +N LTG IP LQ L L L N SG + +W
Sbjct: 224 YNAFEDGLPPEIGNLSELVRFDGANCGLTGEIPPEIGKLQKLDTLFLQVNVFSGPL-TWE 282
Query: 222 LFTLPLLRDIDLSDNQLTGHLDA-FPS-KSLRKLYLTNNRLHGSIPSSIFELANLTYLSL 279
L TL L+ +DLS+N TG + A F K+L L L N+LHG IP I +L L L L
Sbjct: 283 LGTLSSLKSMDLSNNMFTGEIPASFAELKNLTLLNLFRNKLHGEIPEFIGDLPELEVLQL 342
Query: 280 ASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQI-FILSLSACNISAFP 338
NNF+G + P L + L ++LS N L+ GT S ++ +++L + P
Sbjct: 343 WENNFTGSI-PQKLGENGKLNLVDLSSNKLT-GTLPPNMCSGNKLETLITLGNFLFGSIP 400
Query: 339 SFLRSLE-LAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWK---NLK 394
L E L + + EN ++G IP ++ + K L+ ++L N+++ + NL
Sbjct: 401 DSLGKCESLTRIRMGENFLNGSIPKGLFGLPK--LTQVELQDNYLSGELPVAGGVSVNLG 458
Query: 395 YLKLQSNLLQGPLPVPPPR---LQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGK-D 450
+ L +N L GPLP +Q LL N+F G I PS E+GK
Sbjct: 459 QISLSNNQLSGPLPPAIGNFTGVQKLLLDGNKFQGPI------------PS---EVGKLQ 503
Query: 451 SLSYLNLSHNFITKM--KQIS-WKNLGYLDLRSNLLQGPLLVPPSSLRVILILN---NQF 504
LS ++ SHN + +IS K L ++DL N L G + ++++++ LN N
Sbjct: 504 QLSKIDFSHNLFSGRIAPEISRCKLLTFVDLSRNELSGEIPNEITAMKILNYLNLSRNHL 563
Query: 505 TGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFS 540
G I SI + +L LD S N LSG +P G FS
Sbjct: 564 VGSIPGSISSMQSLTSLDFSYNNLSGLVPGT-GQFS 598
|
|
| TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 518 (187.4 bits), Expect = 6.8e-49, P = 6.8e-49
Identities = 188/557 (33%), Positives = 275/557 (49%)
Query: 12 LQLLFLDYVDMSTVVPGTLKNXXXXXXXXXXXYCRIQGEFPENIFRLSNLQMVRLKFNSN 71
L++L L D+ +P ++ N Y + G P +I LS L + L N
Sbjct: 127 LRVLDLTQNDLDGEIPSSIGNLSHLTSLHLS-YNQFLGLIPSSIENLSRLTSLHLSSNQ- 184
Query: 72 LSGVFPRSNWT-SPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNV 130
SG P S S L L++S +FSGQ+P SI NL +L L L +F+G +P+S+GN+
Sbjct: 185 FSGQIPSSIGNLSHLTSLELSSNQFSGQIPSSIGNLSNLTFLSLPSNDFFGQIPSSIGNL 244
Query: 131 TQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFP-DIMNLTRISRLDISNNQ 189
+L L LS+ +F G IP S NL+QL + + SN G P ++NLTR+S L +S+NQ
Sbjct: 245 ARLTYLYLSYNNFVGEIPSSFGNLNQLIVLQVDSNKLSGNVPISLLNLTRLSALLLSHNQ 304
Query: 190 LTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG--HLDAFPS 247
TG+IP++ S L NL NN +GT+PS LF +P L +DLSDNQL G H S
Sbjct: 305 FTGTIPNNISLLSNLMDFEASNNAFTGTLPSSLFNIPPLIRLDLSDNQLNGTLHFGNISS 364
Query: 248 KS-LRKLYLTNNRLHGSIPSSIFELANLTYLSLAS-NNFSGIVEPYMLAKLVNLAALELS 305
S L+ L + +N G+IP S+ NLT L+ N V+ + + L +L L LS
Sbjct: 365 PSNLQYLIIGSNNFIGTIPRSLSRFVNLTLFDLSHLNTQCRPVDFSIFSHLKSLDDLRLS 424
Query: 306 HNSLSFGTTSKVNSSFPQIFIL-SL-------SACNISAFPSFLRSLELAYLDLSENNID 357
+ + TT +N P L SL SA N S+ S S + L LS I
Sbjct: 425 YLTT---TTIDLNDILPYFKTLRSLDISGNLVSATNKSSVSSDPPSQSIQSLYLSGCGIT 481
Query: 358 GQIPNWMWEVGKDTLSFLDLSHNFITEMKQIP-W----KNLKYLKLQSNLLQGPLPVPPP 412
P + + L FLD+S+N I Q+P W NL YL L +N +
Sbjct: 482 -DFPEILRT--QHELGFLDVSNNKIKG--QVPGWLWTLPNLFYLNLSNNTF---ISFESS 533
Query: 413 RLQFLLASNNQFTGEIIQSICSSS--TLEIPSWISEIGKDSLSYLNLSHN----FITKMK 466
+ L+S + +I S++ T +IPS+I G SL+ L+LS N I +
Sbjct: 534 SKKHGLSSVRK--PSMIHLFASNNNFTGKIPSFIC--GLRSLNTLDLSENNYNGSIPRCM 589
Query: 467 QISWKNLGYLDLRSNLLQGPLLVPP---SSLRVILILNNQFTGEIIHSICDIIALDVLDL 523
+ L L+LR N L G L P SLR + + +N G++ S+ L+VL++
Sbjct: 590 EKLKSTLFVLNLRQNNLSGGL--PKHIFESLRSLDVGHNLLVGKLPRSLIRFSNLEVLNV 647
Query: 524 SNNRLSGTIPKCIGNFS 540
+NR++ T P + + S
Sbjct: 648 ESNRINDTFPFWLSSLS 664
|
|
| TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 515 (186.3 bits), Expect = 1.0e-48, P = 1.0e-48
Identities = 173/510 (33%), Positives = 260/510 (50%)
Query: 54 NIFRLSN---LQMVRLKFNSNLSGVFPRSNWT-SPLRCLDVSGTRFSGQLPDSICNLRHL 109
N+ L N L + L +N +LSG S S L LD+SG FSG +P S+ NL HL
Sbjct: 103 NLSMLQNFHFLTTLDLSYN-HLSGQISSSIGNLSHLTTLDLSGNNFSGWIPSSLGNLFHL 161
Query: 110 RELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDG 169
LHL NF G +P+SLGN++ L L LS +F G IP S +L+QL+ + L +N G
Sbjct: 162 TSLHLYDNNFGGEIPSSLGNLSYLTFLDLSTNNFVGEIPSSFGSLNQLSILRLDNNKLSG 221
Query: 170 QFP-DIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLL 228
P +++NLT++S + +S+NQ TG++P + + L L N GTIPS LFT+P +
Sbjct: 222 NLPLEVINLTKLSEISLSHNQFTGTLPPNITSLSILESFSASGNNFVGTIPSSLFTIPSI 281
Query: 229 RDIDLSDNQLTGHLD----AFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNF 284
I L +NQL+G L+ + PS +L L L N L G IP+SI L NL L L+ N
Sbjct: 282 TLIFLDNNQLSGTLEFGNISSPS-NLLVLQLGGNNLRGPIPTSISRLVNLRTLDLSHFNI 340
Query: 285 SGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVN---SSFPQIFILSLSACNISAF-PSF 340
G V+ + + L L L LSH++ + TT +N S F + L LS ++ S
Sbjct: 341 QGQVDFNIFSHLKLLGNLYLSHSNTT--TTIDLNAVLSCFKMLISLDLSGNHVLVTNKSS 398
Query: 341 LRSLELAY---LDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIP-WK--NLK 394
+ L L+LS I + P+ + + + LD+S+N I Q+P W L+
Sbjct: 399 VSDPPLGLIGSLNLSGCGIT-EFPDILRT--QRQMRTLDISNNKIKG--QVPSWLLLQLE 453
Query: 395 YLKLQSNLLQG--------PLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISE 446
Y+ + +N G VP P ++ SNN F+G+I ICS +L I +
Sbjct: 454 YMHISNNNFIGFERSTKLEKTVVPKPSMKHFFGSNNNFSGKIPSFICSLRSLII----LD 509
Query: 447 IGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLLVPPS---SLRVILILNNQ 503
+ ++ S + K K L L+LR N L G L P + SLR + + +N+
Sbjct: 510 LSNNNFS--GAIPPCVGKFKS----TLSDLNLRRNRLSGSL--PKTIIKSLRSLDVSHNE 561
Query: 504 FTGEIIHSICDIIALDVLDLSNNRLSGTIP 533
G++ S+ L+VL++ +NR++ T P
Sbjct: 562 LEGKLPRSLIHFSTLEVLNVESNRINDTFP 591
|
|
| TAIR|locus:2129246 RLP50 "receptor like protein 50" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 506 (183.2 bits), Expect = 1.1e-47, P = 1.1e-47
Identities = 181/568 (31%), Positives = 273/568 (48%)
Query: 12 LQLLFLDYVDMSTVVPGTLKNXXXXXXXXXXXYCRIQGEFPENIFRLSNLQMVRLKFNSN 71
LQ L L Y D+S +P + N C + GE P ++ LS L + L +N +
Sbjct: 107 LQSLDLSYNDLSCTLPDSSGNFKYLRVLNLLG-CNLFGEIPTSLRSLSYLTDLDLSYNDD 165
Query: 72 LSG-VFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNV 130
L+G + LR L ++ +F+G++P S+ NL +L +L LS F G LP S+GN+
Sbjct: 166 LTGEILDSMGNLKHLRVLSLTSCKFTGKIPSSLGNLTYLTDLDLSWNYFTGELPDSMGNL 225
Query: 131 TQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD--------------IMN 176
L VL+L +F G IP SL +L LTD+D+ N F + PD ++N
Sbjct: 226 KSLRVLNLHRCNFFGKIPTSLGSLSNLTDLDISKNEFTSEGPDSMSSLNRLTDFQLMLLN 285
Query: 177 LTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDN 236
L+ ++ +D+S+NQ +PS+ S L L + N+ SGTIPS LF LP L +DL N
Sbjct: 286 LSSLTNVDLSSNQFKAMLPSNMSSLSKLEAFDISGNSFSGTIPSSLFMLPSLIKLDLGTN 345
Query: 237 QLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKL 296
+G L K+ G+I S +NL L + NN +G + P + KL
Sbjct: 346 DFSGPL---------KI--------GNISSP----SNLQELYIGENNINGPI-PRSILKL 383
Query: 297 VNLAALELSH------------------NSLSF-GTTSKVNSS--FPQIFI-LSLSACNI 334
V L+AL LS SL G ++SS P + L LS+CNI
Sbjct: 384 VGLSALSLSFWDTGGIVDFSIFLQLKSLRSLDLSGINLNISSSHHLPSHMMHLILSSCNI 443
Query: 335 SAFPSFLRS-LELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHN-FITEMKQIPWKN 392
S FP FL + L +LD+S N I+GQ+P W+W + TL +++++ N F E+ +P N
Sbjct: 444 SQFPKFLENQTSLYHLDISANQIEGQVPEWLWRL--PTLRYVNIAQNAFSGELTMLP--N 499
Query: 393 LKYLKLQS-NLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDS 451
Y + S N G +P + L+ SNN F+G I P + EI +
Sbjct: 500 PIYSFIASDNKFSGEIPRAVCEIGTLVLSNNNFSGSIP-----------PCF--EISNKT 546
Query: 452 LSYLNLSHNFITKMKQISWKNL-GYL---DLRSNLLQGPL---LVPPSSLRVILILNNQF 504
LS L+L +N ++ + I ++L GYL D+ SN L G L+ S L+ + + N+
Sbjct: 547 LSILHLRNNSLSGV--IPEESLHGYLRSLDVGSNRLSGQFPKSLINCSYLQFLNVEENRI 604
Query: 505 TGEIIHSICDIIALDVLDLSNNRLSGTI 532
+ + L +L L +N G I
Sbjct: 605 NDTFPSWLKSLPNLQLLVLRSNEFHGPI 632
|
|
| TAIR|locus:2090754 RLP43 "receptor like protein 43" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 498 (180.4 bits), Expect = 1.3e-47, P = 1.3e-47
Identities = 166/508 (32%), Positives = 239/508 (47%)
Query: 47 IQGEFPEN--IFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSIC 104
+ G F N I L L + L FN + S L LD+S FSGQ+P SI
Sbjct: 107 LHGRFHSNSSIRNLHFLTTLDLSFNDFKGQIMSSIENLSHLTYLDLSFNHFSGQVPSSIG 166
Query: 105 NLRHLRELHLSQCN-FYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLG 163
NL HL L L CN F G +P+S+GN++ L L LSF F G P S+ L LT ++L
Sbjct: 167 NLSHLTFLDL-YCNQFSGQVPSSIGNLSHLTTLELSFNRFFGQFPSSIGGLSHLTTLNLF 225
Query: 164 SNSFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWL 222
N+F GQ P I NL+ ++ L + N +G IPS L L L L +N G IP WL
Sbjct: 226 VNNFLGQIPSSIGNLSNLTSLYLCKNNFSGQIPSFIGNLSQLTRLDLSSNNFFGEIPGWL 285
Query: 223 FTLPLLRDIDLSDNQLTG-HLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLAS 281
+TLP L ++LS N G P S+ L +NN G IPS I EL +L L L+
Sbjct: 286 WTLPNLFYVNLSYNTFIGFQRPNKPEPSMGHLLGSNNNFTGKIPSFICELRSLETLDLSD 345
Query: 282 NNFSGIVEPYMLAKLV-NLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACN-ISAFPS 339
NNFSG++ P + L NL+ L L N+LS G + F + L + + P
Sbjct: 346 NNFSGLI-PRCMGNLKSNLSHLNLRQNNLSGGLPKHI---FEILRSLDVGHNQLVGKLPR 401
Query: 340 FLRSLE-LAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHN-FITEMKQIPWKNLKYLK 397
LR L L++ N I+ P W+ + K L L L N F + + + L+ +
Sbjct: 402 SLRFFSTLEVLNVESNRINDTFPFWLTSLPK--LQVLVLRSNAFHGPIHEASFLKLRIID 459
Query: 398 LQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIG-KDSLSYLN 456
+ N G LP S+ + S+ + +++ + +DS+ +N
Sbjct: 460 ISHNHFNGTLP-----------SDYFVKWSAMSSLGTDEDRSNANYMGSVYYQDSMVLMN 508
Query: 457 LS-HNFITKMKQISWKNLGYLDLRSNLLQGPLLVPPSSLRVILILN---NQFTGEIIHSI 512
+ + ++ I LD N +G + L+ +L+LN N FTG I S+
Sbjct: 509 KGVESELIRILTIYTA----LDFSGNKFEGEIPKSIGLLKELLVLNLSNNAFTGHIPSSM 564
Query: 513 CDIIALDVLDLSNNRLSGTIPKCIGNFS 540
+ AL+ LD+S N+L G IP+ IGN S
Sbjct: 565 GKLTALESLDVSQNKLYGEIPQEIGNLS 592
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 565 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-50 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 6e-47 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 5e-41 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-28 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-28 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-26 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 3e-17 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-13 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-11 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 5e-09 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 1e-08 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 6e-07 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 7e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 8e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 4e-06 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 4e-06 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 6e-06 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 0.001 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 0.001 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 0.002 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 0.002 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 0.002 | |
| cd00116 | 319 | cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo | 0.002 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 0.003 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 187 bits (476), Expect = 1e-50
Identities = 176/556 (31%), Positives = 246/556 (44%), Gaps = 93/556 (16%)
Query: 28 GTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFP---------- 77
G N SS + S+ LS I G+ IFRL +Q + L N+ LSG P
Sbjct: 62 GITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLS-NNQLSGPIPDDIFTTSSSL 120
Query: 78 ------RSNWTSP--------LRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFL 123
+N+T L LD+S SG++P+ I + L+ L L G +
Sbjct: 121 RYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKI 180
Query: 124 PASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFP-DIMNLTRISR 182
P SL N+T L L+L+ G IP L + L + LG N+ G+ P +I LT ++
Sbjct: 181 PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH 240
Query: 183 LDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHL 242
LD+ N LTG IPS L+NL L LY N LSG IP +F+L L +DLSDN L+G +
Sbjct: 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300
Query: 243 DAFPS--KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLA 300
++L L+L +N G IP ++ L L L L SN FSG + P L K NL
Sbjct: 301 PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI-PKNLGKHNNLT 359
Query: 301 ALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQI 360
L+LS N+L+ P+ C+ S L L L N+++G+I
Sbjct: 360 VLDLSTNNLT--------GEIPE------GLCS---------SGNLFKLILFSNSLEGEI 396
Query: 361 PNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQ---FL 417
P L ++L+ ++LQ N G LP +L FL
Sbjct: 397 PK-------------SLG----------ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFL 433
Query: 418 LASNNQFTGEIIQSICSSSTLEIPSWI---------SEIGKDSLSYLNLSHNFITKM--- 465
SNN G I +L++ S G L L+LS N +
Sbjct: 434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPR 493
Query: 466 KQISWKNLGYLDLRSNLLQGPLLVPPSSLRVILILN---NQFTGEIIHSICDIIALDVLD 522
K S L L L N L G + SS + ++ L+ NQ +G+I S ++ L LD
Sbjct: 494 KLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLD 553
Query: 523 LSNNRLSGTIPKCIGN 538
LS N+LSG IPK +GN
Sbjct: 554 LSQNQLSGEIPKNLGN 569
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 176 bits (447), Expect = 6e-47
Identities = 173/551 (31%), Positives = 254/551 (46%), Gaps = 89/551 (16%)
Query: 31 KNLSSSLTS----------LSLSYCRIQGEFPENIFRLS-NLQMVRLKFNSNLSGVFPRS 79
KN+S ++S ++LS ++ G P++IF S +L+ + L N+N +G PR
Sbjct: 79 KNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS-NNNFTGSIPRG 137
Query: 80 NWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLS 139
+ L LD+S SG++P+ I + L+ L L G +P SL N+T L L+L+
Sbjct: 138 S-IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA 196
Query: 140 FKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFP-DIMNLTRISRLDISNNQLTGSIPSHG 198
G IP L + L + LG N+ G+ P +I LT ++ LD+ N LTG IPS
Sbjct: 197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL 256
Query: 199 SGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPS--KSLRKLYLT 256
L+NL L LY N LSG IP +F+L L +DLSDN L+G + ++L L+L
Sbjct: 257 GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLF 316
Query: 257 NNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSK 316
+N G IP ++ L L L L SN FSG + P L K NL L+LS N+L+ G +
Sbjct: 317 SNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI-PKNLGKHNNLTVLDLSTNNLT-GEIPE 374
Query: 317 VNSSFPQIFIL-------------SLSACNI------------SAFPSFLRSLELAY-LD 350
S +F L SL AC PS L L Y LD
Sbjct: 375 GLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLD 434
Query: 351 LSENNIDGQIPNWMWEVGKDTLSFLDLSHN-FITEMKQ-IPWKNLKYLKLQSNLLQGPLP 408
+S NN+ G+I + W++ +L L L+ N F + K L+ L L N G +P
Sbjct: 435 ISNNNLQGRINSRKWDM--PSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVP 492
Query: 409 ---VPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM 465
L L S N+ +GEI P +S K L L+LSHN ++
Sbjct: 493 RKLGSLSELMQLKLSENKLSGEI------------PDELSSCKK--LVSLDLSHNQLSGQ 538
Query: 466 KQISWKN---LGYLDLRSNLLQGPLLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLD 522
S+ L LDL N Q +GEI ++ ++ +L ++
Sbjct: 539 IPASFSEMPVLSQLDLSQN---------------------QLSGEIPKNLGNVESLVQVN 577
Query: 523 LSNNRLSGTIP 533
+S+N L G++P
Sbjct: 578 ISHNHLHGSLP 588
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 158 bits (401), Expect = 5e-41
Identities = 136/406 (33%), Positives = 207/406 (50%), Gaps = 40/406 (9%)
Query: 12 LQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSN 71
L+ ++L Y ++S +P + L+S L L L Y + G P ++ L NLQ + L + +
Sbjct: 214 LKWIYLGYNNLSGEIPYEIGGLTS-LNHLDLVYNNLTGPIPSSLGNLKNLQYLFL-YQNK 271
Query: 72 LSGVFPRSNWT-SPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNV 130
LSG P S ++ L LD+S SG++P+ + L++L LHL NF G +P +L ++
Sbjct: 272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL 331
Query: 131 TQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD-IMNLTRISRLDISNNQ 189
+L VL L FSG IP +L + LT +DL +N+ G+ P+ + + + +L + +N
Sbjct: 332 PRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS 391
Query: 190 LTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDA--FPS 247
L G IP ++L +RL +N+ SG +PS LPL+ +D+S+N L G +++ +
Sbjct: 392 LEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDM 451
Query: 248 KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHN 307
SL+ L L N+ G +P S F L L L+ N FSG V P L L L L+LS N
Sbjct: 452 PSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQFSGAV-PRKLGSLSELMQLKLSEN 509
Query: 308 SLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEV 367
LS P LS+C +L LDLS N + GQIP E+
Sbjct: 510 KLS--------GEIPD----ELSSCK-----------KLVSLDLSHNQLSGQIPASFSEM 546
Query: 368 GKDTLSFLDLSHNFITEMKQIP-----WKNLKYLKLQSNLLQGPLP 408
LS LDLS N ++ +IP ++L + + N L G LP
Sbjct: 547 --PVLSQLDLSQNQLS--GEIPKNLGNVESLVQVNISHNHLHGSLP 588
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (304), Expect = 1e-28
Identities = 97/330 (29%), Positives = 152/330 (46%), Gaps = 53/330 (16%)
Query: 8 NVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLK 67
N+ LQ LFL +S +P ++ +L L SL LS + GE PE + +L NL+++ L
Sbjct: 258 NLKNLQYLFLYQNKLSGPIPPSIFSLQK-LISLDLSDNSLSGEIPELVIQLQNLEILHL- 315
Query: 68 FNSNLSGVFPRSNWTSP-------------------------LRCLDVSGTRFSGQLPDS 102
F++N +G P + + P L LD+S +G++P+
Sbjct: 316 FSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375
Query: 103 ICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLH------- 155
+C+ +L +L L + G +P SLG L + L SFSG +P + L
Sbjct: 376 LCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDI 435
Query: 156 -----------------QLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHG 198
L + L N F G PD R+ LD+S NQ +G++P
Sbjct: 436 SNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKL 495
Query: 199 SGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSK--SLRKLYLT 256
L L L+L N LSG IP L + L +DLS NQL+G + A S+ L +L L+
Sbjct: 496 GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS 555
Query: 257 NNRLHGSIPSSIFELANLTYLSLASNNFSG 286
N+L G IP ++ + +L ++++ N+ G
Sbjct: 556 QNQLSGEIPKNLGNVESLVQVNISHNHLHG 585
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 2e-28
Identities = 147/458 (32%), Positives = 218/458 (47%), Gaps = 74/458 (16%)
Query: 119 FYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLT 178
F+ FL S+ + +L +L LSFKS LSN + DV L N +
Sbjct: 17 FFLFLNFSMLHAEELELL-LSFKSSINDPLKYLSNWNSSADVCLWQGIT------CNNSS 69
Query: 179 RISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFT-------------- 224
R+ +D+S ++G I S L + + L NN LSG IP +FT
Sbjct: 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNN 129
Query: 225 ---------LPLLRDIDLSDNQLTGHL--DAFPSKSLRKLYLTNNRLHGSIPSSIFELAN 273
+P L +DLS+N L+G + D SL+ L L N L G IP+S+ L +
Sbjct: 130 FTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTS 189
Query: 274 LTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACN 333
L +L+LASN G + P L ++ +L + L +N+LS G + L L N
Sbjct: 190 LEFLTLASNQLVGQI-PRELGQMKSLKWIYLGYNNLS-GEIPYEIGGLTSLNHLDLVYNN 247
Query: 334 ISA-FPSFLRSL-ELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIP-- 389
++ PS L +L L YL L +N + G IP ++ + K L LDLS N ++ +IP
Sbjct: 248 LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQK--LISLDLSDNSLS--GEIPEL 303
Query: 390 ---WKNLKYLKLQSNLLQGPLPV---PPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSW 443
+NL+ L L SN G +PV PRLQ L +N+F+GEI +
Sbjct: 304 VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK------------- 350
Query: 444 ISEIGK-DSLSYLNLSHNFIT-KMKQ--ISWKNLGYLDLRSNLLQGPLLVPPS-----SL 494
+GK ++L+ L+LS N +T ++ + S NL L L SN L+G +P S SL
Sbjct: 351 --NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGE--IPKSLGACRSL 406
Query: 495 RVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTI 532
R + + +N F+GE+ + + LD+SNN L G I
Sbjct: 407 RRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRI 444
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 2e-26
Identities = 87/266 (32%), Positives = 140/266 (52%), Gaps = 7/266 (2%)
Query: 6 VQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVR 65
+ ++ +LQ+L L S +P L ++LT L LS + GE PE + NL +
Sbjct: 328 LTSLPRLQVLQLWSNKFSGEIPKNLGK-HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLI 386
Query: 66 LKFNSNLSGVFPRS-NWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLP 124
L F+++L G P+S LR + + FSG+LP L + L +S N G +
Sbjct: 387 L-FSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRIN 445
Query: 125 ASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD-IMNLTRISRL 183
+ ++ L +LSL+ F G +P S +L ++DL N F G P + +L+ + +L
Sbjct: 446 SRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQL 504
Query: 184 DISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLD 243
+S N+L+G IP S + L L L +N LSG IP+ +P+L +DLS NQL+G +
Sbjct: 505 KLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564
Query: 244 AFPSK--SLRKLYLTNNRLHGSIPSS 267
SL ++ +++N LHGS+PS+
Sbjct: 565 KNLGNVESLVQVNISHNHLHGSLPST 590
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 3e-17
Identities = 61/178 (34%), Positives = 86/178 (48%), Gaps = 12/178 (6%)
Query: 33 LSSSLTSLSLSYC------RIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLR 86
L S T L L Y +QG + + +LQM+ L N G P S + L
Sbjct: 420 LPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARN-KFFGGLPDSFGSKRLE 478
Query: 87 CLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGH 146
LD+S +FSG +P + +L L +L LS+ G +P L + +L L LS SG
Sbjct: 479 NLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQ 538
Query: 147 IPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRL---DISNNQLTGSIPSHGSGL 201
IP S S + L+ +DL N G+ P NL + L +IS+N L GS+PS G+ L
Sbjct: 539 IPASFSEMPVLSQLDLSQNQLSGEIPK--NLGNVESLVQVNISHNHLHGSLPSTGAFL 594
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 2e-13
Identities = 38/85 (44%), Positives = 52/85 (61%), Gaps = 2/85 (2%)
Query: 88 LDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHI 147
LD G R G +P+ I LRHL+ ++LS + G +P SLG++T L VL LS+ SF+G I
Sbjct: 425 LDNQGLR--GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 148 PPSLSNLHQLTDVDLGSNSFDGQFP 172
P SL L L ++L NS G+ P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 1e-11
Identities = 70/232 (30%), Positives = 97/232 (41%), Gaps = 47/232 (20%)
Query: 318 NSSFPQIFILSLSACNISA--FPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFL 375
NSS ++ + LS NIS + R + ++LS N + G IP D +
Sbjct: 67 NSS--RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIP--------DDIFTT 116
Query: 376 DLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPP-PRLQFLLASNNQFTGEIIQSICS 434
S L+YL L +N G +P P L+ L SNN +GEI I S
Sbjct: 117 SSS--------------LRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGS 162
Query: 435 SSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLG---YLDLRSNLLQGPL---L 488
S SL L+L N + S NL +L L SN L G + L
Sbjct: 163 FS--------------SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL 208
Query: 489 VPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFS 540
SL+ I + N +GEI + I + +L+ LDL N L+G IP +GN
Sbjct: 209 GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK 260
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 2e-09
Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 2/103 (1%)
Query: 136 LSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFP-DIMNLTRISRLDISNNQLTGSI 194
L L + G IP +S L L ++L NS G P + ++T + LD+S N GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 195 PSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDI-DLSDN 236
P L +L +L L N+LSG +P+ L L R + +DN
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 5e-09
Identities = 34/103 (33%), Positives = 50/103 (48%), Gaps = 2/103 (1%)
Query: 168 DGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPL 227
D QF I L + N L G IP+ S L++L + L N++ G IP L ++
Sbjct: 408 DCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITS 467
Query: 228 LRDIDLSDNQLTGHLDAFPSK--SLRKLYLTNNRLHGSIPSSI 268
L +DLS N G + + SLR L L N L G +P+++
Sbjct: 468 LEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 1e-08
Identities = 87/318 (27%), Positives = 134/318 (42%), Gaps = 46/318 (14%)
Query: 52 PENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRE 111
PEN L LQM K GV + LR +D+ G++ ++PD + +L
Sbjct: 610 PEN---LVKLQMQGSKLEKLWDGVHSLTG----LRNIDLRGSKNLKEIPD-LSMATNLET 661
Query: 112 LHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQF 171
L LS C+ LP+S+ + +L L +S +P + NL L ++L S F
Sbjct: 662 LKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSF 720
Query: 172 PDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDI 231
PDI T IS LD+ + PS+ L+NL L L ++
Sbjct: 721 PDIS--TNISWLDLDETAIE-EFPSNLR-LENLDELILCE----------------MKSE 760
Query: 232 DLSDN-QLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEP 290
L + Q L S SL +L+L++ +PSSI L L +L + N +
Sbjct: 761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIE--NCINLE-- 816
Query: 291 YMLAKLVNLAALELSHNSLSFGTTSKVNSSFP----QIFILSLSACNISAFPSFLRSL-E 345
L +NL +LE SL S++ +FP I L+LS I P ++
Sbjct: 817 -TLPTGINLESLE----SLDLSGCSRLR-TFPDISTNISDLNLSRTGIEEVPWWIEKFSN 870
Query: 346 LAYLDLSE-NNIDGQIPN 362
L++LD++ NN+ N
Sbjct: 871 LSFLDMNGCNNLQRVSLN 888
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 6e-07
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 160 VDLGSNSFDGQFP-DIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTI 218
+ L + G P DI L + +++S N + G+IP + +L VL L N+ +G+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 219 PSWLFTLPLLRDIDLSDNQLTGHLDA 244
P L L LR ++L+ N L+G + A
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPA 508
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 7e-07
Identities = 83/304 (27%), Positives = 128/304 (42%), Gaps = 10/304 (3%)
Query: 36 SLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRF 95
S + + I FP++ + + L +SN + P S L
Sbjct: 22 SSNTYHTTPQSINLNFPDSNLESVAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGIS 81
Query: 96 SGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLH 155
S +++ NL L L L+ + L +T L L L + + IPP + L
Sbjct: 82 SLDGSENLLNLLPLPSLDLNLNRLRSNISE-LLELTNLTSLDLDNNNIT-DIPPLIGLLK 139
Query: 156 -QLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTL 214
L ++DL N + + NL + LD+S N L+ +P S L NL L L N +
Sbjct: 140 SNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKI 198
Query: 215 SGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPS-KSLRKLYLTNNRLHGSIPSSIFELAN 273
S +P + L L ++DLS+N + L + + K+L L L+NN+L +P SI L+N
Sbjct: 199 S-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL-EDLPESIGNLSN 256
Query: 274 LTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACN 333
L L L++N I L L NL L+LS NSLS +L+L
Sbjct: 257 LETLDLSNNQ---ISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTL 313
Query: 334 ISAF 337
+
Sbjct: 314 KALE 317
|
Length = 394 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 8e-07
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 69 NSNLSGVFPRSNWTS--PLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPAS 126
N L G P ++ + L+ +++SG G +P S+ ++ L L LS +F G +P S
Sbjct: 427 NQGLRGFIP-NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES 485
Query: 127 LGNVTQLAVLSLSFKSFSGHIPPSL 151
LG +T L +L+L+ S SG +P +L
Sbjct: 486 LGQLTSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 4e-06
Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 47 IQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWT-SPLRCLDVSGTRFSGQLPDSICN 105
++G P +I +L +LQ + L NS + G P S + + L LD+S F+G +P+S+
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNS-IRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ 488
Query: 106 LRHLRELHLSQCNFYGFLPASLG 128
L LR L+L+ + G +PA+LG
Sbjct: 489 LTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 4e-06
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 249 SLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHN 307
+L+ L L+NNRL IP F+ L NL L L+ NN + I P + L +L +L+LS N
Sbjct: 1 NLKSLDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSI-SPEAFSGLPSLRSLDLSGN 58
Query: 308 SL 309
+L
Sbjct: 59 NL 60
|
Length = 60 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 6e-06
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 235 DNQ-LTGHLDAFPSK--SLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPY 291
DNQ L G + SK L+ + L+ N + G+IP S+ + +L L L+ N+F+G + P
Sbjct: 426 DNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI-PE 484
Query: 292 MLAKLVNLAALELSHNSLS 310
L +L +L L L+ NSLS
Sbjct: 485 SLGQLTSLRILNLNGNSLS 503
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 9/107 (8%)
Query: 11 KLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNS 70
LQ + L + +P +L +++S L L LSY G PE++ +L++L+++ L NS
Sbjct: 443 HLQSINLSGNSIRGNIPPSLGSITS-LEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501
Query: 71 NLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLREL--HLS 115
LSG P + L F+ +C + LR HLS
Sbjct: 502 -LSGRVPAALGGRLLH-----RASFNFTDNAGLCGIPGLRACGPHLS 542
|
Length = 623 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.001
Identities = 25/60 (41%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 203 NLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG-HLDAF-PSKSLRKLYLTNNRL 260
NL L L NN L+ LP L+ +DLS N LT +AF SLR L L+ N L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 494 LRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIG 537
L+ I + N G I S+ I +L+VLDLS N +G+IP+ +G
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG 487
|
Length = 623 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.002
Identities = 26/60 (43%), Positives = 31/60 (51%)
Query: 179 RISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQL 238
+ LD+SNN+LT GL NL VL L N L+ P LP LR +DLS N L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.002
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 228 LRDIDLSDNQLTG-HLDAFPS-KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNF 284
L+ +DLS+N+LT AF +L+ L L+ N L P + L +L L L+ NN
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 61/285 (21%), Positives = 93/285 (32%), Gaps = 75/285 (26%)
Query: 274 LTYLSLASNNFSGI-----VEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILS 328
L L L+ N I L K L L+LS N+L
Sbjct: 53 LKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG------------- 99
Query: 329 LSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKD---TLSFLDLSHNFITEM 385
S LRS L L L+ N + + + + KD L L L N +
Sbjct: 100 -------VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGA 152
Query: 386 KQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWIS 445
L++N L+ L +NN I+++
Sbjct: 153 SCEALAKA----LRAN----------RDLKELNLANNGIGDAGIRALA------------ 186
Query: 446 EIGKDS--LSYLNLSHNFITK--MKQI-----SWKNLGYLDLRSNLLQGP--------LL 488
E K + L L+L++N +T + S K+L L+L N L LL
Sbjct: 187 EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALL 246
Query: 489 VPPSSLRVILILNNQFTGEIIHSICDIIA----LDVLDLSNNRLS 529
P SL + + N T + + +++A L LDL N+
Sbjct: 247 SPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.003
Identities = 69/320 (21%), Positives = 124/320 (38%), Gaps = 52/320 (16%)
Query: 32 NLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVS 91
+++++L +L LS C E P +I L+ L+ + + NL
Sbjct: 654 SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE------------------ 695
Query: 92 GTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSL 151
LP I NL+ L L+LS C+ P N++ L + + + F ++ L
Sbjct: 696 ------ILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLR--L 746
Query: 152 SNLHQLTDVDLGSNSFDGQFPDIMNLTRI-----SRLDISNNQLTGSIPSHGSGLQNLAV 206
NL +L ++ S + + L + +RL +S+ +PS L L
Sbjct: 747 ENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEH 806
Query: 207 LRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFP--SKSLRKLYLTNNRLHGSI 264
L + N T+P+ + L L +DLS L FP S ++ L L+ + +
Sbjct: 807 LEIENCINLETLPTGI-NLESLESLDLSG---CSRLRTFPDISTNISDLNLSRTGIE-EV 861
Query: 265 PSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAAL------ELSHNSLSFGTTSKVN 318
P I + +NL++L + N V ++KL +L + L+ S + +
Sbjct: 862 PWWIEKFSNLSFLDMNGCNNLQRVSLN-ISKLKHLETVDFSDCGALTEASWNGSPSEVAM 920
Query: 319 ------SSFPQIFILSLSAC 332
S P ++ C
Sbjct: 921 ATDNIHSKLPSTVCINFINC 940
|
syringae 6; Provisional. Length = 1153 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 565 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 100.0 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.98 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.97 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.97 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.95 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.94 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.91 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.89 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.88 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.87 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.86 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.84 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.8 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.78 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.63 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.61 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.54 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.5 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.24 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.19 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.18 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.13 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.11 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.11 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.09 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.04 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.02 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.99 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.96 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.92 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.85 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.78 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.77 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.74 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.71 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.68 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.67 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.66 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.64 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.64 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.57 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.47 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.45 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.41 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.41 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.35 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.34 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.33 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.3 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 98.28 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 98.07 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 98.03 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.96 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.77 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.73 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.7 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 97.7 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.68 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.59 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.46 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 97.35 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.11 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.03 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 97.01 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.85 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.79 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 96.2 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 95.93 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.37 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 94.98 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 94.27 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 93.55 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 93.03 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 92.54 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 92.29 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 90.77 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 90.77 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 89.16 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 87.33 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 87.33 | |
| smart00364 | 26 | LRR_BAC Leucine-rich repeats, bacterial type. | 82.94 | |
| smart00368 | 28 | LRR_RI Leucine rich repeat, ribonuclease inhibitor | 81.04 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-52 Score=462.37 Aligned_cols=506 Identities=32% Similarity=0.475 Sum_probs=449.2
Q ss_pred CCCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCcccc-CCCCCCEEecCCCCCCCccCCCCCCCCCCcE
Q 037786 9 VTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIF-RLSNLQMVRLKFNSNLSGVFPRSNWTSPLRC 87 (565)
Q Consensus 9 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~ 87 (565)
..+++.|+++++.+.+..+..+..+ ++|++|++++|++.+.+|..+. .+++|++|++++| ...+..+. ...++|++
T Consensus 68 ~~~v~~L~L~~~~i~~~~~~~~~~l-~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n-~l~~~~p~-~~l~~L~~ 144 (968)
T PLN00113 68 SSRVVSIDLSGKNISGKISSAIFRL-PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNN-NFTGSIPR-GSIPNLET 144 (968)
T ss_pred CCcEEEEEecCCCccccCChHHhCC-CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCC-ccccccCc-cccCCCCE
Confidence 3578999999999988888889888 9999999999999877776654 8999999999999 56555543 34589999
Q ss_pred EEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccc
Q 037786 88 LDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSF 167 (565)
Q Consensus 88 L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 167 (565)
|++++|.+.+..|..+.++++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+..+++|+.|++++|.+
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 224 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL 224 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence 99999999988999999999999999999999888999999999999999999999988999999999999999999998
Q ss_pred cccCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCC-
Q 037786 168 DGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF- 245 (565)
Q Consensus 168 ~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~- 245 (565)
.+..+. ++.+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..
T Consensus 225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 304 (968)
T PLN00113 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV 304 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhH
Confidence 865554 899999999999999999889999999999999999999998888888999999999999999988665543
Q ss_pred -CCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCc
Q 037786 246 -PSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQI 324 (565)
Q Consensus 246 -~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L 324 (565)
..++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|++....+..+ ..++++
T Consensus 305 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~~~~L~~L~Ls~n~l~~~~p~~~-~~~~~L 382 (968)
T PLN00113 305 IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP-KNLGKHNNLTVLDLSTNNLTGEIPEGL-CSSGNL 382 (968)
T ss_pred cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC-hHHhCCCCCcEEECCCCeeEeeCChhH-hCcCCC
Confidence 67899999999999998889999999999999999999986655 568889999999999999987666555 567899
Q ss_pred cEEEcCCCCCC-CCCchhhcc-ccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCC---CCCCCCeEEcC
Q 037786 325 FILSLSACNIS-AFPSFLRSL-ELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI---PWKNLKYLKLQ 399 (565)
Q Consensus 325 ~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~ 399 (565)
+.|++++|.+. .+|..+... +|+.|++++|++++..|..+. .++.|+.|++++|.++...+. .+++|+.|+++
T Consensus 383 ~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 460 (968)
T PLN00113 383 FKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT--KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLA 460 (968)
T ss_pred CEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh--cCCCCCEEECcCCcccCccChhhccCCCCcEEECc
Confidence 99999999987 566555544 999999999999988887765 679999999999999887663 67899999999
Q ss_pred CCcccccCCCC--CCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cc--cCCCccc
Q 037786 400 SNLLQGPLPVP--PPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQ--ISWKNLG 474 (565)
Q Consensus 400 ~n~~~~~~~~~--~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~ 474 (565)
+|++.+..|.. .++|++|++++|++++..+..+..+ +.|++|++++|.+.+. |. ..+++|+
T Consensus 461 ~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l--------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 526 (968)
T PLN00113 461 RNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSL--------------SELMQLKLSENKLSGEIPDELSSCKKLV 526 (968)
T ss_pred CceeeeecCcccccccceEEECcCCccCCccChhhhhh--------------hccCEEECcCCcceeeCChHHcCccCCC
Confidence 99998877765 6889999999999999999888888 9999999999999977 65 7789999
Q ss_pred EEECCCCcccccCCC---CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCC
Q 037786 475 YLDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKC 535 (565)
Q Consensus 475 ~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~ 535 (565)
.|++++|.+++.+|. .+++|++||+++|.+++.+|..+..+++|+.|++++|++.+.+|+.
T Consensus 527 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 527 SLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred EEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence 999999999987776 7899999999999999999999999999999999999999988865
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-50 Score=447.91 Aligned_cols=500 Identities=33% Similarity=0.444 Sum_probs=443.1
Q ss_pred CCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCC--CCCCCcEEEccCCccCccCCccccCCCCCCEE
Q 037786 35 SSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSN--WTSPLRCLDVSGTRFSGQLPDSICNLRHLREL 112 (565)
Q Consensus 35 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 112 (565)
.+++.|+++++.+++..+.++..+++|++|++++| ...+.++... .+++|++|++++|.+++.+|. ..+++|++|
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n-~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L 145 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNN-QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETL 145 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCC-ccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEE
Confidence 57999999999999888999999999999999999 6665555443 459999999999999877775 568999999
Q ss_pred EcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcC-CcCCCCCCEEeccCCccc
Q 037786 113 HLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD-IMNLTRISRLDISNNQLT 191 (565)
Q Consensus 113 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~ 191 (565)
++++|.+.+..|..++++++|++|++++|.+.+..|..+.++++|++|++++|.+.+..+. ++.+++|+.|++++|.+.
T Consensus 146 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 225 (968)
T PLN00113 146 DLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS 225 (968)
T ss_pred ECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC
Confidence 9999999888999999999999999999999888999999999999999999998765554 899999999999999999
Q ss_pred ccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCC--CCCCCcEEEccCCccccCCchhhh
Q 037786 192 GSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF--PSKSLRKLYLTNNRLHGSIPSSIF 269 (565)
Q Consensus 192 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~ 269 (565)
+..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+.. ..++|++|++++|.+.+..|..+.
T Consensus 226 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 305 (968)
T PLN00113 226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI 305 (968)
T ss_pred CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc
Confidence 889999999999999999999998888999999999999999999987654432 668999999999999988999999
Q ss_pred cCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCC-CCCchhhcc-ccc
Q 037786 270 ELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNIS-AFPSFLRSL-ELA 347 (565)
Q Consensus 270 ~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~-~l~~~~~~~-~L~ 347 (565)
.+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+....+..+ ..+++|+.|++++|++. .+|..+... +++
T Consensus 306 ~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~ 383 (968)
T PLN00113 306 QLQNLEILHLFSNNFTGKIP-VALTSLPRLQVLQLWSNKFSGEIPKNL-GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLF 383 (968)
T ss_pred CCCCCcEEECCCCccCCcCC-hhHhcCCCCCEEECcCCCCcCcCChHH-hCCCCCcEEECCCCeeEeeCChhHhCcCCCC
Confidence 99999999999999986654 568899999999999999987666555 77899999999999987 566555444 899
Q ss_pred eEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCC---CCCCCCeEEcCCCcccccCCC---CCCCCcEEEccc
Q 037786 348 YLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI---PWKNLKYLKLQSNLLQGPLPV---PPPRLQFLLASN 421 (565)
Q Consensus 348 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~---~~~~L~~L~l~~ 421 (565)
.+++++|.+.+.+|..+. .+++|+.|++++|+++...+. .+++|+.|++++|.+.+..+. .+++|++|++++
T Consensus 384 ~L~l~~n~l~~~~p~~~~--~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 461 (968)
T PLN00113 384 KLILFSNSLEGEIPKSLG--ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461 (968)
T ss_pred EEECcCCEecccCCHHHh--CCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence 999999999989998876 579999999999999876553 678999999999999987765 389999999999
Q ss_pred cccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cc--cCCCcccEEECCCCcccccCCC---CCCCCc
Q 037786 422 NQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQ--ISWKNLGYLDLRSNLLQGPLLV---PPSSLR 495 (565)
Q Consensus 422 n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~ls~n~l~~~~~~---~~~~L~ 495 (565)
|++.+..|..+. . ++|++|++++|++.+. |. ..+++|+.|++++|.+.+.+|. .+++|+
T Consensus 462 n~~~~~~p~~~~-~--------------~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 526 (968)
T PLN00113 462 NKFFGGLPDSFG-S--------------KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLV 526 (968)
T ss_pred ceeeeecCcccc-c--------------ccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCC
Confidence 999877666442 2 7999999999999987 64 6789999999999999987776 789999
Q ss_pred EeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCCCCCCCCCcccccCCCCccccc
Q 037786 496 VILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSPWCQTKWPSRWSATTL 556 (565)
Q Consensus 496 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~l~~~~~~~~~~~ 556 (565)
+|++++|.+++..|..++.+++|+.|++++|++.+.+|+.++.+++|+.+++.+..+....
T Consensus 527 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~ 587 (968)
T PLN00113 527 SLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSL 587 (968)
T ss_pred EEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeC
Confidence 9999999999999999999999999999999999999999999999999999987665433
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=288.42 Aligned_cols=372 Identities=22% Similarity=0.225 Sum_probs=238.4
Q ss_pred eeeccCCcccccCCcCccCCCCCCEEEccCccccccCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccc
Q 037786 135 VLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTL 214 (565)
Q Consensus 135 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 214 (565)
.|++++|.+....+..|.++++|+++++..|.+..++.......+|+.|++..|.+..+....+..++.|+.||++.|.+
T Consensus 82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~i 161 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLI 161 (873)
T ss_pred eeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchh
Confidence 45555555555445555555555555555555543333333333455555555555444444444445555555555544
Q ss_pred cCCCchhhcCCCCCCEEEccCCcccccCCCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhh
Q 037786 215 SGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLA 294 (565)
Q Consensus 215 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~ 294 (565)
.......|..-.+ +++|++.+|.|+..-...|..+.+|..|.++.|+++. ++...|+
T Consensus 162 s~i~~~sfp~~~n----------------------i~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt-Lp~r~Fk 218 (873)
T KOG4194|consen 162 SEIPKPSFPAKVN----------------------IKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT-LPQRSFK 218 (873)
T ss_pred hcccCCCCCCCCC----------------------ceEEeeccccccccccccccccchheeeecccCcccc-cCHHHhh
Confidence 4333333333344 4555555555554444445555556666666666552 3445555
Q ss_pred cCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCchh--hccccceEeccCCcCcccCChhhhhhCCCCc
Q 037786 295 KLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFL--RSLELAYLDLSENNIDGQIPNWMWEVGKDTL 372 (565)
Q Consensus 295 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L 372 (565)
.+++|+.|++..|.|...-... +.++++|+.|.+..|++..+.+.+ ...++++|+++.|+++..-..|++ ++.+|
T Consensus 219 ~L~~L~~LdLnrN~irive~lt-FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf--gLt~L 295 (873)
T KOG4194|consen 219 RLPKLESLDLNRNRIRIVEGLT-FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF--GLTSL 295 (873)
T ss_pred hcchhhhhhccccceeeehhhh-hcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccc--ccchh
Confidence 5666666666666554222222 256666777777777766554422 222777788888877766666666 67888
Q ss_pred cEEEcCCCccCCccCC---CCCCCCeEEcCCCcccccCCCC---CCCCcEEEccccccCccchhhhhhcCCCCCCccccc
Q 037786 373 SFLDLSHNFITEMKQI---PWKNLKYLKLQSNLLQGPLPVP---PPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISE 446 (565)
Q Consensus 373 ~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~ 446 (565)
+.|++|+|.|..+... .+++|+.|+|++|+++...+.. +..|++|.+++|.++......|...
T Consensus 296 ~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~l----------- 364 (873)
T KOG4194|consen 296 EQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGL----------- 364 (873)
T ss_pred hhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHh-----------
Confidence 8888888888877764 4577888888888887654443 7778888888888876666666666
Q ss_pred cCCCCCcEEeCcCCCCCCC-cc-----cCCCcccEEECCCCcccc---cCCCCCCCCcEeeccCceeeeccchhhhcCCC
Q 037786 447 IGKDSLSYLNLSHNFITKM-KQ-----ISWKNLGYLDLRSNLLQG---PLLVPPSSLRVILILNNQFTGEIIHSICDIIA 517 (565)
Q Consensus 447 ~~~~~L~~L~l~~n~l~~~-~~-----~~~~~L~~L~ls~n~l~~---~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~ 517 (565)
.+|++|||++|.++.. .+ .++++|+.|++-||++.. ..+..+..|+.||+.+|.|-.+.+++|..+ .
T Consensus 365 ---ssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~ 440 (873)
T KOG4194|consen 365 ---SSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-E 440 (873)
T ss_pred ---hhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-h
Confidence 7888888888887765 22 568888888888888754 334488888888888888888888888888 8
Q ss_pred CCEEeCCCCcCcccCCCCCCCCCCCcccccCCCCcccccch
Q 037786 518 LDVLDLSNNRLSGTIPKCIGNFSPWCQTKWPSRWSATTLFE 558 (565)
Q Consensus 518 L~~L~l~~n~~~~~~p~~l~~l~~L~~l~~~~~~~~~~~~~ 558 (565)
|++|-+..-.+.|. |+|+|...|+..-.+.
T Consensus 441 Lk~Lv~nSssflCD-----------Cql~Wl~qWl~~~~lq 470 (873)
T KOG4194|consen 441 LKELVMNSSSFLCD-----------CQLKWLAQWLYRRKLQ 470 (873)
T ss_pred hhhhhhcccceEEe-----------ccHHHHHHHHHhcccc
Confidence 88888888888888 9999999998655443
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=278.98 Aligned_cols=383 Identities=24% Similarity=0.274 Sum_probs=282.9
Q ss_pred CcEEEcCCCcCCCCCchhhhh-cCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCC-CCCcEEE
Q 037786 12 LQLLFLDYVDMSTVVPGTLKN-LSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWT-SPLRCLD 89 (565)
Q Consensus 12 L~~L~l~~~~~~~~~~~~~~~-l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~-~~L~~L~ 89 (565)
-+.||.+++.+..+....+.+ +|+..+.|++++|++....+..|.++++|+.+++..| ....+|.+... .+++.|+
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N--~Lt~IP~f~~~sghl~~L~ 131 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN--ELTRIPRFGHESGHLEKLD 131 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccc--hhhhcccccccccceeEEe
Confidence 346888888777665444333 4567788999999988888888899999999998887 33445555555 6688888
Q ss_pred ccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccc
Q 037786 90 VSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDG 169 (565)
Q Consensus 90 l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 169 (565)
|.+|.|...-.+.+.-++.|++|||+.|.++.+....|..-.++++|++++|+|+..-...|..+.+|..|.++.|.++.
T Consensus 132 L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt 211 (873)
T KOG4194|consen 132 LRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT 211 (873)
T ss_pred eeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc
Confidence 88888876667777888888888888888877766777777788888888888887777788888888888888888887
Q ss_pred cCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCC--C
Q 037786 170 QFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF--P 246 (565)
Q Consensus 170 ~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~ 246 (565)
++.. |.++++|+.|++..|++.-..-..|.++++|+.|.+..|.+.......|..+.++++|+++.|++....... .
T Consensus 212 Lp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg 291 (873)
T KOG4194|consen 212 LPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG 291 (873)
T ss_pred cCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccc
Confidence 7666 777888888888888877444556788888888888888887777778888888888888888887544333 6
Q ss_pred CCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccE
Q 037786 247 SKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFI 326 (565)
Q Consensus 247 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~ 326 (565)
...|+.|++++|.|...-++....+++|++|++++|.++. .++..|..+..|++|++++|.++...... +..+++|++
T Consensus 292 Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~-l~~~sf~~L~~Le~LnLs~Nsi~~l~e~a-f~~lssL~~ 369 (873)
T KOG4194|consen 292 LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR-LDEGSFRVLSQLEELNLSHNSIDHLAEGA-FVGLSSLHK 369 (873)
T ss_pred cchhhhhccchhhhheeecchhhhcccceeEecccccccc-CChhHHHHHHHhhhhcccccchHHHHhhH-HHHhhhhhh
Confidence 6778888888888876666666677888888888888874 45667777888888888888776543333 366778888
Q ss_pred EEcCCCCCC-CCC----chhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCCCCC--CCCeEEcC
Q 037786 327 LSLSACNIS-AFP----SFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWK--NLKYLKLQ 399 (565)
Q Consensus 327 L~l~~~~l~-~l~----~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~--~L~~L~l~ 399 (565)
|++++|.+. .++ .+.+...|+.|++.+|++. .++...+. ++++|+.|||.+|.|.++-+..|. .|++|-+.
T Consensus 370 LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfs-gl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 370 LDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFS-GLEALEHLDLGDNAIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred hcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhc-cCcccceecCCCCcceeecccccccchhhhhhhc
Confidence 888888765 122 2223336777777777777 56655554 677777777777777777664332 45555554
Q ss_pred C
Q 037786 400 S 400 (565)
Q Consensus 400 ~ 400 (565)
.
T Consensus 448 S 448 (873)
T KOG4194|consen 448 S 448 (873)
T ss_pred c
Confidence 3
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=280.97 Aligned_cols=464 Identities=26% Similarity=0.372 Sum_probs=286.5
Q ss_pred CccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEcc
Q 037786 36 SLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLS 115 (565)
Q Consensus 36 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~ 115 (565)
.++.+.+++|.+. .....+.++.-|.+|++.+| ......+.+.....++.++++++.+. .+|+.+....+++.++.+
T Consensus 46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n-~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDN-KLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccCchh-hccHhhhcccceeEEEeccc-hhhhCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 4566666666665 44455666666777777666 55555555555566666777777666 566667777777777777
Q ss_pred cccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcCCcCCCCCCEEeccCCcccccCC
Q 037786 116 QCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIP 195 (565)
Q Consensus 116 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 195 (565)
+|.+. ..++.++.+..+..++..+|.+. ..|+++..+.++..+++.+|.+...++..-+++.|++++...|.+. .+|
T Consensus 123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP 199 (565)
T KOG0472|consen 123 SNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLP 199 (565)
T ss_pred cccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCC
Confidence 76665 44555666667777777777666 4666666666777777777776666666444677777777666665 566
Q ss_pred CCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCC--CCCCCcEEEccCCccccCCchhhhcCCC
Q 037786 196 SHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF--PSKSLRKLYLTNNRLHGSIPSSIFELAN 273 (565)
Q Consensus 196 ~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 273 (565)
..++.+.+|..|++..|++. ..| .|.+|..|++++++.|++.....+. ..+++..|++++|+++ ..|+.+..+.+
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrs 276 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRS 276 (565)
T ss_pred hhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhh
Confidence 66666777777777777765 344 5666777777777777666444333 4566677777777776 67777777777
Q ss_pred cCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccC----CCCCccEEEcCCCCCC--------------
Q 037786 274 LTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNS----SFPQIFILSLSACNIS-------------- 335 (565)
Q Consensus 274 L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~----~~~~L~~L~l~~~~l~-------------- 335 (565)
|++||+++|.++.. +..++++ +|+.|.+.||++...--..+.. -+..|+. .+..-.+.
T Consensus 277 L~rLDlSNN~is~L--p~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs-~~~~dglS~se~~~e~~~t~~~ 352 (565)
T KOG0472|consen 277 LERLDLSNNDISSL--PYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS-KIKDDGLSQSEGGTETAMTLPS 352 (565)
T ss_pred hhhhcccCCccccC--Ccccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH-hhccCCCCCCcccccccCCCCC
Confidence 77888887777754 3456777 7777777777664211110000 0111111 00000000
Q ss_pred -CCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCCCCCCCCeEEcCCCcccccCCCCCCCC
Q 037786 336 -AFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRL 414 (565)
Q Consensus 336 -~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L 414 (565)
.+|......+.+.|++++-+++ .+|..+|..+-. .-.+..+++.|++. +.|..++.+
T Consensus 353 ~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~--------------------~~Vt~VnfskNqL~-elPk~L~~l 410 (565)
T KOG0472|consen 353 ESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKS--------------------EIVTSVNFSKNQLC-ELPKRLVEL 410 (565)
T ss_pred Ccccchhhhhhhhhhcccccccc-cCCHHHHHHhhh--------------------cceEEEecccchHh-hhhhhhHHH
Confidence 0111111113444444444444 444444432110 11345555555554 344443222
Q ss_pred c----EEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcc--cCCCcccEEECCCCcccccCC
Q 037786 415 Q----FLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQ--ISWKNLGYLDLRSNLLQGPLL 488 (565)
Q Consensus 415 ~----~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~ls~n~l~~~~~ 488 (565)
+ .+++++|.+ +-.+..++.+ ++|..|++++|.+.++|. +.+-.|+.+++|.|++.. .|
T Consensus 411 kelvT~l~lsnn~i-sfv~~~l~~l--------------~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~-lP 474 (565)
T KOG0472|consen 411 KELVTDLVLSNNKI-SFVPLELSQL--------------QKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRM-LP 474 (565)
T ss_pred HHHHHHHHhhcCcc-ccchHHHHhh--------------hcceeeecccchhhhcchhhhhhhhhheeccccccccc-ch
Confidence 2 344455544 3666777777 888888888888888865 666678888888886543 34
Q ss_pred C---CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCCCCCCCCCcccccCCCC
Q 037786 489 V---PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSPWCQTKWPSRW 551 (565)
Q Consensus 489 ~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~l~~~~~~ 551 (565)
. .+..++++-.++|++...-+.++.++.+|..||+++|.+. .+|+.+++|++|++|.+.|..
T Consensus 475 ~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 475 ECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred HHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCc
Confidence 3 6677777777778888767777888888888888888887 788888888888888777743
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.5e-35 Score=292.36 Aligned_cols=475 Identities=26% Similarity=0.280 Sum_probs=256.6
Q ss_pred EEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCc
Q 037786 15 LFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTR 94 (565)
Q Consensus 15 L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 94 (565)
+|.+.+++..++..-+.. ..++.|+++.|.+-....+++.+.-+|+.|+++.| .............+|+.|.++.|.
T Consensus 3 vd~s~~~l~~ip~~i~~~--~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn-~~~~fp~~it~l~~L~~ln~s~n~ 79 (1081)
T KOG0618|consen 3 VDASDEQLELIPEQILNN--EALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNN-QISSFPIQITLLSHLRQLNLSRNY 79 (1081)
T ss_pred cccccccCcccchhhccH--HHHHhhhccccccccCchHHhhheeeeEEeecccc-ccccCCchhhhHHHHhhcccchhh
Confidence 455666665554443333 33677777777554333445555556777777776 344444444444777777777777
Q ss_pred cCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcCC
Q 037786 95 FSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDI 174 (565)
Q Consensus 95 ~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 174 (565)
+. ..|.+..++.+|++++|.+|... ..|..+..+++|+.|++++|.+. ..|..+..+..+..+..++|.. ...+
T Consensus 80 i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~---~~~l 153 (1081)
T KOG0618|consen 80 IR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEK---IQRL 153 (1081)
T ss_pred Hh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchh---hhhh
Confidence 76 55677778888888888876654 67777888888888888888776 5677777777777777777711 1112
Q ss_pred cCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCCCCCCCcEEE
Q 037786 175 MNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLY 254 (565)
Q Consensus 175 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~ 254 (565)
+... ++.+++..+.+.+.++..+..+.. .+++++|.+. ...+..+++|+.+....|++.... ...++++.|+
T Consensus 154 g~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~--~~g~~l~~L~ 225 (1081)
T KOG0618|consen 154 GQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE--ISGPSLTALY 225 (1081)
T ss_pred cccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEE--ecCcchheee
Confidence 2222 666666666666555555554444 5677777664 123445555555555555544221 1224455555
Q ss_pred ccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCC
Q 037786 255 LTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNI 334 (565)
Q Consensus 255 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l 334 (565)
..+|.++... ......++++++++.+.+... +.++..+.+|+.++..+|.++.. +... ....+|+.+.+.+|.+
T Consensus 226 a~~n~l~~~~--~~p~p~nl~~~dis~n~l~~l--p~wi~~~~nle~l~~n~N~l~~l-p~ri-~~~~~L~~l~~~~nel 299 (1081)
T KOG0618|consen 226 ADHNPLTTLD--VHPVPLNLQYLDISHNNLSNL--PEWIGACANLEALNANHNRLVAL-PLRI-SRITSLVSLSAAYNEL 299 (1081)
T ss_pred eccCcceeec--cccccccceeeecchhhhhcc--hHHHHhcccceEecccchhHHhh-HHHH-hhhhhHHHHHhhhhhh
Confidence 5555544111 112223555555555555433 24555555555555555555321 1111 2334455555555555
Q ss_pred CCCCchhhcc-ccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCC---CCCCCCeEEcCCCcccccCCCC
Q 037786 335 SAFPSFLRSL-ELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI---PWKNLKYLKLQSNLLQGPLPVP 410 (565)
Q Consensus 335 ~~l~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~ 410 (565)
..+|.+.... .|+.|++..|++. .+|..++.....+++.+..+.|++...+.. ..+.|+.|.+.+|.+++.....
T Consensus 300 ~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~ 378 (1081)
T KOG0618|consen 300 EYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPV 378 (1081)
T ss_pred hhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhh
Confidence 5555544422 5555555555555 444444333233355555555555555442 3345555555555555433221
Q ss_pred ---CCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcc--cCCCcccEEECCCCcccc
Q 037786 411 ---PPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQ--ISWKNLGYLDLRSNLLQG 485 (565)
Q Consensus 411 ---~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~ls~n~l~~ 485 (565)
.+.|+.|++++|++.......+.++ +.|++|++|+|++..+|. ..|+.|+.|..-+|.+.-
T Consensus 379 l~~~~hLKVLhLsyNrL~~fpas~~~kl--------------e~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~ 444 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSYNRLNSFPASKLRKL--------------EELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLS 444 (1081)
T ss_pred hccccceeeeeecccccccCCHHHHhch--------------HHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceee
Confidence 5555555555555554444444554 555555555555555543 455555555555555543
Q ss_pred cCCC--CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcC
Q 037786 486 PLLV--PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRL 528 (565)
Q Consensus 486 ~~~~--~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~ 528 (565)
.|+ .+++|+.+|+|.|.++......-..-++|++||++||.-
T Consensus 445 -fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 445 -FPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred -chhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 223 555555555555555433222111225566666665554
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-35 Score=267.13 Aligned_cols=472 Identities=25% Similarity=0.308 Sum_probs=347.9
Q ss_pred hCCCCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCc
Q 037786 7 QNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLR 86 (565)
Q Consensus 7 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~ 86 (565)
..-..++.+.+++|.+.... ..+..+ +.+.+|++++|+.. ..|.+++.+..++.++.++| +.....+.......++
T Consensus 42 W~qv~l~~lils~N~l~~l~-~dl~nL-~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~ 117 (565)
T KOG0472|consen 42 WEQVDLQKLILSHNDLEVLR-EDLKNL-ACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHN-KLSELPEQIGSLISLV 117 (565)
T ss_pred hhhcchhhhhhccCchhhcc-Hhhhcc-cceeEEEeccchhh-hCCHHHHHHHHHHHhhcccc-hHhhccHHHhhhhhhh
Confidence 34456788999999987654 456777 88999999999998 78889999999999999999 7777777777779999
Q ss_pred EEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCcc
Q 037786 87 CLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNS 166 (565)
Q Consensus 87 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 166 (565)
+++++++.+. ..+++++.+..++.++..+|++. ..|.++.++.++..+++.++.+.. .|+..-.++.|++++...|.
T Consensus 118 ~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~~N~ 194 (565)
T KOG0472|consen 118 KLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCNSNL 194 (565)
T ss_pred hhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHHHHHHHHhcccchhh
Confidence 9999999998 77889999999999999999987 567888999999999999999984 55554459999999999999
Q ss_pred ccccCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCC-
Q 037786 167 FDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF- 245 (565)
Q Consensus 167 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~- 245 (565)
+...++.++.+.+|..|++..|++. ..| .|.+|..|++++++.|.+.....+....++++.+|++++|++...+++.
T Consensus 195 L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~c 272 (565)
T KOG0472|consen 195 LETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEIC 272 (565)
T ss_pred hhcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHH
Confidence 9989999999999999999999998 667 7999999999999999998555556678999999999999999887776
Q ss_pred CCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChH--------hhhcCCC-CCEEEccCCc---ccccc
Q 037786 246 PSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPY--------MLAKLVN-LAALELSHNS---LSFGT 313 (565)
Q Consensus 246 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~--------~l~~~~~-L~~L~l~~~~---i~~~~ 313 (565)
-.++|..|++++|.++ ..|..++++ +|+.|.+.||++... ... .+..+++ .+.=.++... -+...
T Consensus 273 lLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTi-Rr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t 349 (565)
T KOG0472|consen 273 LLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTI-RREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMT 349 (565)
T ss_pred HhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHH-HHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCC
Confidence 6678999999999999 678889998 999999999987532 111 1111111 0000111110 00000
Q ss_pred -CCcc---cCCCCCccEEEcCCCCCCCCCchhhcc----ccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCc
Q 037786 314 -TSKV---NSSFPQIFILSLSACNISAFPSFLRSL----ELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEM 385 (565)
Q Consensus 314 -~~~~---~~~~~~L~~L~l~~~~l~~l~~~~~~~----~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ 385 (565)
.... .....+.+.|++++-+++.+|...+.. -++..+++.|++. ++|..+... -..++.+.+++|.+..+
T Consensus 350 ~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~l-kelvT~l~lsnn~isfv 427 (565)
T KOG0472|consen 350 LPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVEL-KELVTDLVLSNNKISFV 427 (565)
T ss_pred CCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHH-HHHHHHHHhhcCccccc
Confidence 0000 022346788899999999999766554 3889999999998 888876532 12344566666666555
Q ss_pred cCC--CCCCCCeEEcCCCcccccCCCCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCC
Q 037786 386 KQI--PWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFIT 463 (565)
Q Consensus 386 ~~~--~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 463 (565)
+.. .+++|.-|++++|.+. +.|..+..+ -.|++|++++|++.
T Consensus 428 ~~~l~~l~kLt~L~L~NN~Ln----------------------~LP~e~~~l--------------v~Lq~LnlS~NrFr 471 (565)
T KOG0472|consen 428 PLELSQLQKLTFLDLSNNLLN----------------------DLPEEMGSL--------------VRLQTLNLSFNRFR 471 (565)
T ss_pred hHHHHhhhcceeeecccchhh----------------------hcchhhhhh--------------hhhheecccccccc
Confidence 542 5566666666666554 233333333 44555555555555
Q ss_pred CCcc--cCCCcccEEECCCCcccccCCC---CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCc
Q 037786 464 KMKQ--ISWKNLGYLDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLS 529 (565)
Q Consensus 464 ~~~~--~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 529 (565)
..|. .....++.+-.+.|++...-++ .+.+|.+||+.+|.+. .+|..+++|++|++|+++||+|+
T Consensus 472 ~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 472 MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 4443 2223333444444444432222 5567777777777776 46677999999999999999998
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-33 Score=280.18 Aligned_cols=474 Identities=26% Similarity=0.296 Sum_probs=376.6
Q ss_pred CcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEcc
Q 037786 12 LQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVS 91 (565)
Q Consensus 12 L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~ 91 (565)
++.|++..|.+...+...+... -+|++|++++|++. ..|..+..+++|+.|+++.| .+.........+..|+++.|.
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~-v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n-~i~~vp~s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKR-VKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRN-YIRSVPSSCSNMRNLQYLNLK 99 (1081)
T ss_pred HHhhhccccccccCchHHhhhe-eeeEEeeccccccc-cCCchhhhHHHHhhcccchh-hHhhCchhhhhhhcchhheec
Confidence 7788888887766555555565 67999999999997 78888999999999999988 455555455555999999999
Q ss_pred CCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccC
Q 037786 92 GTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQF 171 (565)
Q Consensus 92 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 171 (565)
+|.+. ..|..+..+.+|++|+++.|.+. ..|..+..+..+..+..++|......+.. . ++.+++..+.+...+
T Consensus 100 ~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~----~-ik~~~l~~n~l~~~~ 172 (1081)
T KOG0618|consen 100 NNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQT----S-IKKLDLRLNVLGGSF 172 (1081)
T ss_pred cchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccc----c-chhhhhhhhhcccch
Confidence 99988 78999999999999999999986 55777888899999999998322222221 1 777777777765444
Q ss_pred cC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCCCCCCC
Q 037786 172 PD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSL 250 (565)
Q Consensus 172 ~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L 250 (565)
.. +..+.. .+++.+|.+. . ..+..++.|+.+....|.+... -..-++++.|..++|.+........+..+
T Consensus 173 ~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~~p~p~nl 243 (1081)
T KOG0618|consen 173 LIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDVHPVPLNL 243 (1081)
T ss_pred hcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceE----EecCcchheeeeccCcceeeccccccccc
Confidence 33 555554 6999999876 2 3466788999999998887632 22457899999999999977667788899
Q ss_pred cEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcC
Q 037786 251 RKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLS 330 (565)
Q Consensus 251 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~ 330 (565)
+.++++++.++ .+|.|+..+.+|+.++..+|.+... +.......+|+.+.+..|.+.+..+ +......|++|++.
T Consensus 244 ~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~l--p~ri~~~~~L~~l~~~~nel~yip~--~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 244 QYLDISHNNLS-NLPEWIGACANLEALNANHNRLVAL--PLRISRITSLVSLSAAYNELEYIPP--FLEGLKSLRTLDLQ 318 (1081)
T ss_pred eeeecchhhhh-cchHHHHhcccceEecccchhHHhh--HHHHhhhhhHHHHHhhhhhhhhCCC--cccccceeeeeeeh
Confidence 99999999999 6789999999999999999999644 4556777899999999999876543 33668899999999
Q ss_pred CCCCCCCCchhhcc---ccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccC---CCCCCCCeEEcCCCccc
Q 037786 331 ACNISAFPSFLRSL---ELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQ---IPWKNLKYLKLQSNLLQ 404 (565)
Q Consensus 331 ~~~l~~l~~~~~~~---~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~l~~n~~~ 404 (565)
.|++..+|..+... .+..++.+.|.+. ..|.. .....+.|+.|++.+|.+++-.. ..+++|+.|+|++|++.
T Consensus 319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~-~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLS-TLPSY-EENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred hccccccchHHHhhhhHHHHHHhhhhcccc-ccccc-cchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence 99999998754433 5888888988887 44422 22246889999999999998655 37899999999999987
Q ss_pred ccCCC---CCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcc-cCCCcccEEECCC
Q 037786 405 GPLPV---PPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQ-ISWKNLGYLDLRS 480 (565)
Q Consensus 405 ~~~~~---~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~ls~ 480 (565)
..... .++.|+.|++|||+++ .+|..+..+ +.|++|-..+|++..+|. ..+++|+.+|+|.
T Consensus 397 ~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~--------------~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~ 461 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGNKLT-TLPDTVANL--------------GRLHTLRAHSNQLLSFPELAQLPQLKVLDLSC 461 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhh--------------hhhHHHhhcCCceeechhhhhcCcceEEeccc
Confidence 53332 2788999999999998 566888888 999999999999999986 8889999999999
Q ss_pred Ccccc-cCCC-CC-CCCcEeeccCceeeeccchhhhcCCCCCEEeCCCC
Q 037786 481 NLLQG-PLLV-PP-SSLRVILILNNQFTGEIIHSICDIIALDVLDLSNN 526 (565)
Q Consensus 481 n~l~~-~~~~-~~-~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 526 (565)
|.++. .++. .+ ++|++||+++|.-...-.+.|..+.++..+++.-+
T Consensus 462 N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 462 NNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred chhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 99985 3343 44 89999999999965455567777888888887777
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6e-30 Score=245.16 Aligned_cols=371 Identities=25% Similarity=0.323 Sum_probs=310.4
Q ss_pred hCCCCCcEEEcCCCcCC-CCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCC
Q 037786 7 QNVTKLQLLFLDYVDMS-TVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPL 85 (565)
Q Consensus 7 ~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L 85 (565)
+-++-+|-+|+++|.++ +..|..+..+ .+++.|.|..+++. .+|+.++.+.+|++|.+++| .+.........++.|
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qM-t~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN-~L~~vhGELs~Lp~L 80 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQM-TQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHN-QLISVHGELSDLPRL 80 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHh-hheeEEEechhhhh-hChHHHHHHhhhhhhhhhhh-hhHhhhhhhccchhh
Confidence 45677888999999988 4567778887 99999999999887 78999999999999999999 677766777777999
Q ss_pred cEEEccCCccC-ccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccC
Q 037786 86 RCLDVSGTRFS-GQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGS 164 (565)
Q Consensus 86 ~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (565)
|.+++..|++. .-+|..+..+..|..|+|++|++. ..|..+..-++.-+|++++|.|..+....|-+++.|-.|++++
T Consensus 81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence 99999999875 346888889999999999999987 6688888889999999999999866556778899999999999
Q ss_pred ccccccCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEccccccc-CCCchhhcCCCCCCEEEccCCcccccCC
Q 037786 165 NSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLS-GTIPSWLFTLPLLRDIDLSDNQLTGHLD 243 (565)
Q Consensus 165 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 243 (565)
|++...+|.+.++..|+.|.+++|++.......+..+++|+.|.+++..-+ ..+|..+..+.+|..++++.|.+...+.
T Consensus 160 NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPe 239 (1255)
T KOG0444|consen 160 NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPE 239 (1255)
T ss_pred chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchH
Confidence 999999999999999999999999887665566777888999999987643 3577888899999999999998885544
Q ss_pred CC-CCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCC
Q 037786 244 AF-PSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFP 322 (565)
Q Consensus 244 ~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~ 322 (565)
.. ..++|+.|++++|.++ .+........+|++|+++.|+++.. ++.+..++.|+.|.+.+|+++.++.+.-.+.+.
T Consensus 240 cly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt~L--P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~ 316 (1255)
T KOG0444|consen 240 CLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLTVL--PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI 316 (1255)
T ss_pred HHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhccc--hHHHhhhHHHHHHHhccCcccccCCccchhhhh
Confidence 33 6788999999999998 5555566778899999999999854 567888999999999999998887776668888
Q ss_pred CccEEEcCCCCCCCCCchhhcc-ccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccC
Q 037786 323 QIFILSLSACNISAFPSFLRSL-ELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQ 387 (565)
Q Consensus 323 ~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~ 387 (565)
+|+.+...+|.+.-+|..+..+ .|+.|.++.|.+- .+|.++- -++.|+.||+..|+-..+|+
T Consensus 317 ~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLi-TLPeaIH--lL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 317 QLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIH--LLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhHHHHhhccccccCchhhhhhHHHHHhccccccee-echhhhh--hcCCcceeeccCCcCccCCC
Confidence 8888888888888788766655 8888888888887 6777765 35788888888887666666
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.4e-29 Score=238.66 Aligned_cols=363 Identities=25% Similarity=0.368 Sum_probs=221.9
Q ss_pred CCCCCEEEcccccCc-ccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcCCcCCCCCCEEe
Q 037786 106 LRHLRELHLSQCNFY-GFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLD 184 (565)
Q Consensus 106 l~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 184 (565)
++-.+-.++++|.++ +..|..+..+++++.|.+...++. .+|+.++.+++|++|.+++|++..+..++..++.|+.+.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVI 84 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHh
Confidence 344566677777765 456666677777777777766665 567777777777777777777766655666777777777
Q ss_pred ccCCcccc-cCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCCCCCCCcEEEccCCccccC
Q 037786 185 ISNNQLTG-SIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGS 263 (565)
Q Consensus 185 l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 263 (565)
+..|++.. -+|..+..+..|+.||++.|.+. ..|..+..-+++-+|++++|++...+..
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~------------------- 144 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNS------------------- 144 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCch-------------------
Confidence 77666542 24555556666677777776665 4555555556666666666666543322
Q ss_pred CchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCC--CCCchh
Q 037786 264 IPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNIS--AFPSFL 341 (565)
Q Consensus 264 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~--~l~~~~ 341 (565)
.+.++..|-.|++++|.+.. .++ ....+..|+.|++++|++.......+ .++.+|+.|.+++.+=+ .+|..+
T Consensus 145 ---lfinLtDLLfLDLS~NrLe~-LPP-Q~RRL~~LqtL~Ls~NPL~hfQLrQL-PsmtsL~vLhms~TqRTl~N~Ptsl 218 (1255)
T KOG0444|consen 145 ---LFINLTDLLFLDLSNNRLEM-LPP-QIRRLSMLQTLKLSNNPLNHFQLRQL-PSMTSLSVLHMSNTQRTLDNIPTSL 218 (1255)
T ss_pred ---HHHhhHhHhhhccccchhhh-cCH-HHHHHhhhhhhhcCCChhhHHHHhcC-ccchhhhhhhcccccchhhcCCCch
Confidence 23344444445555554432 222 23444455555555554433222222 44455556666655432 455555
Q ss_pred hcc-ccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCC--CCCCCCeEEcCCCcccccCCCCCCCCcEEE
Q 037786 342 RSL-ELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI--PWKNLKYLKLQSNLLQGPLPVPPPRLQFLL 418 (565)
Q Consensus 342 ~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~ 418 (565)
... +|..+|++.|.+. .+|..++ ..++|++|+||+|+|+.+... .|.+|++|+++.|+++
T Consensus 219 d~l~NL~dvDlS~N~Lp-~vPecly--~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-------------- 281 (1255)
T KOG0444|consen 219 DDLHNLRDVDLSENNLP-IVPECLY--KLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-------------- 281 (1255)
T ss_pred hhhhhhhhccccccCCC-cchHHHh--hhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc--------------
Confidence 444 7777788877777 7777777 457888888888887776653 5666666666555554
Q ss_pred ccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCC--Ccc--cCCCcccEEECCCCcccccCCC---CC
Q 037786 419 ASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITK--MKQ--ISWKNLGYLDLRSNLLQGPLLV---PP 491 (565)
Q Consensus 419 l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~--~~~~~L~~L~ls~n~l~~~~~~---~~ 491 (565)
..|..+|++ +.|+.|...+|+++- +|. +.+.+|+++..++|.+.- .|. .|
T Consensus 282 --------~LP~avcKL--------------~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LEl-VPEglcRC 338 (1255)
T KOG0444|consen 282 --------VLPDAVCKL--------------TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLEL-VPEGLCRC 338 (1255)
T ss_pred --------cchHHHhhh--------------HHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccccc-Cchhhhhh
Confidence 456666666 666666666665543 344 555666666666666532 333 56
Q ss_pred CCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCCCC
Q 037786 492 SSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIG 537 (565)
Q Consensus 492 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l~ 537 (565)
..|+.|.+++|++- ..|+++.-++-|++||+..|+.. ..|+-.+
T Consensus 339 ~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL-VMPPKP~ 382 (1255)
T KOG0444|consen 339 VKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL-VMPPKPN 382 (1255)
T ss_pred HHHHHhccccccee-echhhhhhcCCcceeeccCCcCc-cCCCCcc
Confidence 66677777777754 36778888888888888888877 5565554
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.7e-23 Score=228.31 Aligned_cols=334 Identities=20% Similarity=0.216 Sum_probs=268.9
Q ss_pred CCCCCcCCCCCCEEEccccccc------CCCchhhcCC-CCCCEEEccCCcccccCCCCCCCCCcEEEccCCccccCCch
Q 037786 194 IPSHGSGLQNLAVLRLYNNTLS------GTIPSWLFTL-PLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPS 266 (565)
Q Consensus 194 ~~~~~~~~~~L~~L~l~~~~l~------~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 266 (565)
.+..|..+++|+.|.+..+... ...+..+..+ ++|+.|++.++++...+..+.+.+|++|++.++.+. .++.
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~-~L~~ 628 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE-KLWD 628 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccc-cccc
Confidence 3445788999999998765321 2244445554 469999999999988887788899999999999987 5666
Q ss_pred hhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCC-CCCCCchhhccc
Q 037786 267 SIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACN-ISAFPSFLRSLE 345 (565)
Q Consensus 267 ~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~-l~~l~~~~~~~~ 345 (565)
.+..+++|+.++++++.....++ .++.+++|+.|++++|......+..+ ..+++|+.|++++|. +..+|......+
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~L~~c~~L~~lp~si-~~L~~L~~L~L~~c~~L~~Lp~~i~l~s 705 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIP--DLSMATNLETLKLSDCSSLVELPSSI-QYLNKLEDLDMSRCENLEILPTGINLKS 705 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCC--ccccCCcccEEEecCCCCccccchhh-hccCCCCEEeCCCCCCcCccCCcCCCCC
Confidence 77889999999999886544544 36788999999999987655555544 778999999999974 667887665559
Q ss_pred cceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCC-CCCCCCeEEcCCCcccc----------cCCCCCCCC
Q 037786 346 LAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI-PWKNLKYLKLQSNLLQG----------PLPVPPPRL 414 (565)
Q Consensus 346 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~l~~n~~~~----------~~~~~~~~L 414 (565)
|+.|++++|.....+|.. ..+|+.|++++|.++.++.. .+++|++|++.++.... .....+++|
T Consensus 706 L~~L~Lsgc~~L~~~p~~-----~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL 780 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFPDI-----STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL 780 (1153)
T ss_pred CCEEeCCCCCCccccccc-----cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccc
Confidence 999999999766566542 46899999999999988874 67899999998754221 111236899
Q ss_pred cEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCC-CCCCcc-cCCCcccEEECCCCcccccCCCCCC
Q 037786 415 QFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNF-ITKMKQ-ISWKNLGYLDLRSNLLQGPLLVPPS 492 (565)
Q Consensus 415 ~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~-~~~~~L~~L~ls~n~l~~~~~~~~~ 492 (565)
+.|++++|.....+|..+..+ ++|++|++++|. +..+|. ..+++|+.|++++|.....+|..++
T Consensus 781 ~~L~Ls~n~~l~~lP~si~~L--------------~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~ 846 (1153)
T PLN03210 781 TRLFLSDIPSLVELPSSIQNL--------------HKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDIST 846 (1153)
T ss_pred hheeCCCCCCccccChhhhCC--------------CCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccccccc
Confidence 999999998887888888888 999999999985 555565 5689999999999987666777788
Q ss_pred CCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCCCCCCCCCcccccCCCC
Q 037786 493 SLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSPWCQTKWPSRW 551 (565)
Q Consensus 493 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~l~~~~~~ 551 (565)
+|+.|++++|.++ .+|..+..+++|+.|++++|+....+|..+..+++|+.+++.+|.
T Consensus 847 nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 847 NISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 9999999999998 578889999999999999988887899999999999999988864
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-21 Score=216.59 Aligned_cols=336 Identities=24% Similarity=0.275 Sum_probs=178.6
Q ss_pred chhhhhcCCCccEEEccCCc------ccccCCccccCCC-CCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccC
Q 037786 27 PGTLKNLSSSLTSLSLSYCR------IQGEFPENIFRLS-NLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQL 99 (565)
Q Consensus 27 ~~~~~~l~~~L~~L~l~~~~------i~~~~~~~~~~l~-~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 99 (565)
..+|.++ ++|+.|.+.++. +....|..+..++ +|+.|.+.++ .. ..++......+|++|++.++.+. .+
T Consensus 551 ~~aF~~m-~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l-~~lP~~f~~~~L~~L~L~~s~l~-~L 626 (1153)
T PLN03210 551 ENAFKGM-RNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PL-RCMPSNFRPENLVKLQMQGSKLE-KL 626 (1153)
T ss_pred HHHHhcC-ccccEEEEecccccccccceeecCcchhhcCcccEEEEecCC-CC-CCCCCcCCccCCcEEECcCcccc-cc
Confidence 3445544 555555554331 1112334444433 3555555544 22 22222233455555555555554 34
Q ss_pred CccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcCCcCCCC
Q 037786 100 PDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTR 179 (565)
Q Consensus 100 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 179 (565)
+..+..+++|+.|+++++......| .+..+++|+.|++++|.....+|..+..+++|+.|++++|......+...++++
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~s 705 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKS 705 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCC
Confidence 5555556666666665544322333 245556666666666554445555566666666666665543222333225566
Q ss_pred CCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccC---------CCCCCCCC
Q 037786 180 ISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHL---------DAFPSKSL 250 (565)
Q Consensus 180 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~---------~~~~~~~L 250 (565)
|+.|++++|......|.. ..+|+.|+++++.+. ..|..+ .+++|+.|.+.++...... ....+++|
T Consensus 706 L~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL 780 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL 780 (1153)
T ss_pred CCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccc
Confidence 666666665433333321 245666666666654 233322 3455666665543321110 01134567
Q ss_pred cEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcC
Q 037786 251 RKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLS 330 (565)
Q Consensus 251 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~ 330 (565)
+.|++++|.....+|..+.++++|+.|++++|.....++.. ..+++|+.|++++|......+ ....+++.|+++
T Consensus 781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~--~~L~sL~~L~Ls~c~~L~~~p----~~~~nL~~L~Ls 854 (1153)
T PLN03210 781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG--INLESLESLDLSGCSRLRTFP----DISTNISDLNLS 854 (1153)
T ss_pred hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC--CCccccCEEECCCCCcccccc----ccccccCEeECC
Confidence 77777777666567777777788888888777544344322 256777777777764322111 223567777777
Q ss_pred CCCCCCCCchhhcc-ccceEeccCCcCcccCChhhhhhCCCCccEEEcCCC
Q 037786 331 ACNISAFPSFLRSL-ELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHN 380 (565)
Q Consensus 331 ~~~l~~l~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n 380 (565)
+|.++.+|..+... +|+.|++++|+-...+|.... .+++|+.+++++|
T Consensus 855 ~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~--~L~~L~~L~l~~C 903 (1153)
T PLN03210 855 RTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNIS--KLKHLETVDFSDC 903 (1153)
T ss_pred CCCCccChHHHhcCCCCCEEECCCCCCcCccCcccc--cccCCCeeecCCC
Confidence 77777777655544 677777777543334554433 3466667777666
|
syringae 6; Provisional |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.5e-25 Score=198.83 Aligned_cols=405 Identities=19% Similarity=0.160 Sum_probs=181.2
Q ss_pred CEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccC-ccccccCcC-CcCCCCCCEEeccC
Q 037786 110 RELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGS-NSFDGQFPD-IMNLTRISRLDISN 187 (565)
Q Consensus 110 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~-~~~~~~L~~L~l~~ 187 (565)
.+++|..|.|+.+.+.+|+.+++|+.||+++|.|+.+.|.+|.+++++..|-+.+ |+++.+... |+++..++.|.+.-
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 4444444444444444444444444444444444444444444444444443333 444433333 44444444444444
Q ss_pred CcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCC--------------CCCCCcEE
Q 037786 188 NQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF--------------PSKSLRKL 253 (565)
Q Consensus 188 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--------------~~~~L~~L 253 (565)
|++.-+....|..++++..|.+.+|.+.......|..+..++.+++..|++....... ......-.
T Consensus 150 n~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~ 229 (498)
T KOG4237|consen 150 NHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPY 229 (498)
T ss_pred hhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchH
Confidence 4444333444444455555555555444333334444555555555444432111000 00001111
Q ss_pred EccCCccccCCchhhhc-CCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCC
Q 037786 254 YLTNNRLHGSIPSSIFE-LANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSAC 332 (565)
Q Consensus 254 ~l~~~~~~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~ 332 (565)
.+.+.++...-+..+.. ...+.+=-.+.+......+...|..+++|++|++++|+++......+ .....+++|.+..|
T Consensus 230 rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aF-e~~a~l~eL~L~~N 308 (498)
T KOG4237|consen 230 RLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAF-EGAAELQELYLTRN 308 (498)
T ss_pred HHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhh-cchhhhhhhhcCcc
Confidence 11111111111111111 11221112223333344455566666666666666666654333332 55556666666666
Q ss_pred CCCCCCchhhcc--ccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCCCCCCCCeEEcCCCcccccCCCC
Q 037786 333 NISAFPSFLRSL--ELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVP 410 (565)
Q Consensus 333 ~l~~l~~~~~~~--~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 410 (565)
++..+...+..- .|+.|++.+|+++...|.++. ...+|.+|++-.|++.---...| |.. .+.+.+-.+..++.
T Consensus 309 ~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~--~~~~l~~l~l~~Np~~CnC~l~w--l~~-Wlr~~~~~~~~~Cq 383 (498)
T KOG4237|consen 309 KLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ--TLFSLSTLNLLSNPFNCNCRLAW--LGE-WLRKKSVVGNPRCQ 383 (498)
T ss_pred hHHHHHHHhhhccccceeeeecCCeeEEEeccccc--ccceeeeeehccCcccCccchHH--HHH-HHhhCCCCCCCCCC
Confidence 555443322211 455555555555533333322 22344444443333221100000 000 00111111122222
Q ss_pred -CCCCcEEEccccccCc---cchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cccCCCcccEEECCCCcccc
Q 037786 411 -PPRLQFLLASNNQFTG---EIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQISWKNLGYLDLRSNLLQG 485 (565)
Q Consensus 411 -~~~L~~L~l~~n~i~~---~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~L~~L~ls~n~l~~ 485 (565)
|-.++.++++...+.+ ..++..+-....- ...+++.+.++.=..|+.... |.+....-+++++.+|.++.
T Consensus 384 ~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~-----cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~~ 458 (498)
T KOG4237|consen 384 SPGFVRQIPISDVAFGDFRCGGPEELGCLTSSP-----CPPPCTCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAITS 458 (498)
T ss_pred CCchhccccchhccccccccCCccccCCCCCCC-----CCCCcchhhhhHhhcccchhhcCCCCCchhHHHhcccchhcc
Confidence 5566666666664432 2222221111111 111224555444444444444 66555677788888888765
Q ss_pred cCCCCCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCC
Q 037786 486 PLLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNN 526 (565)
Q Consensus 486 ~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 526 (565)
...+.+.+| .+|+++|+++...-..|.++++|.+|-|++|
T Consensus 459 vp~~~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 459 VPDELLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred cCHHHHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 322366777 8888888887666677888888888888775
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-21 Score=202.32 Aligned_cols=264 Identities=23% Similarity=0.270 Sum_probs=186.6
Q ss_pred CCCEEEccCCcccccCCCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccC
Q 037786 227 LLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSH 306 (565)
Q Consensus 227 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~ 306 (565)
.-..|+++++.+...+... ..+++.|++.+|.++ .+|. ..++|++|++++|.++.. +. ..++|+.|++++
T Consensus 202 ~~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~LtsL-P~----lp~sL~~L~Ls~ 271 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSL-PV----LPPGLLELSIFS 271 (788)
T ss_pred CCcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCcc-cC----cccccceeeccC
Confidence 3456666666666433322 246777777777766 3443 246777777777777643 21 235777778877
Q ss_pred CccccccCCcccCCCCCccEEEcCCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCcc
Q 037786 307 NSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMK 386 (565)
Q Consensus 307 ~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~ 386 (565)
|.++... ..+..|+.|++++|+++.+|.. ..+|+.|++++|+++ .+|. .+..|+.|++++|.++.++
T Consensus 272 N~L~~Lp-----~lp~~L~~L~Ls~N~Lt~LP~~--p~~L~~LdLS~N~L~-~Lp~-----lp~~L~~L~Ls~N~L~~LP 338 (788)
T PRK15387 272 NPLTHLP-----ALPSGLCKLWIFGNQLTSLPVL--PPGLQELSVSDNQLA-SLPA-----LPSELCKLWAYNNQLTSLP 338 (788)
T ss_pred Cchhhhh-----hchhhcCEEECcCCcccccccc--ccccceeECCCCccc-cCCC-----CcccccccccccCcccccc
Confidence 7765321 1235677788888888777653 236888888888887 4443 1356788888888888776
Q ss_pred CCCCCCCCeEEcCCCcccccCCCCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCc
Q 037786 387 QIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMK 466 (565)
Q Consensus 387 ~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 466 (565)
.. ..+|+.|++++|++.. +|..+++|+.|++++|++++ +|.. . .+|+.|++++|.+..+|
T Consensus 339 ~l-p~~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~~-LP~l---~--------------~~L~~LdLs~N~Lt~LP 398 (788)
T PRK15387 339 TL-PSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTS-LPAL---P--------------SGLKELIVSGNRLTSLP 398 (788)
T ss_pred cc-ccccceEecCCCccCC-CCCCCcccceehhhcccccc-Cccc---c--------------cccceEEecCCcccCCC
Confidence 42 2578888888888874 56667888888888888873 2221 1 57889999999988876
Q ss_pred ccCCCcccEEECCCCcccccCCCCCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCCC
Q 037786 467 QISWKNLGYLDLRSNLLQGPLLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCI 536 (565)
Q Consensus 467 ~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l 536 (565)
. ..++|+.|++++|.+++ +|..+.+|+.|++++|.++ .+|..+.++++|+.|+|++|++.+..|..+
T Consensus 399 ~-l~s~L~~LdLS~N~Lss-IP~l~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 399 V-LPSELKELMVSGNRLTS-LPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred C-cccCCCEEEccCCcCCC-CCcchhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 4 24689999999999876 6666778899999999998 578888999999999999999987766554
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-23 Score=192.01 Aligned_cols=135 Identities=21% Similarity=0.237 Sum_probs=81.9
Q ss_pred hhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCC
Q 037786 31 KNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLR 110 (565)
Q Consensus 31 ~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 110 (565)
.++|+....+.|..|+|+.+.+.+|..+++|++|+||+| .|+.+.|++|..++.+.
T Consensus 63 ~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N------------------------~Is~I~p~AF~GL~~l~ 118 (498)
T KOG4237|consen 63 ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN------------------------NISFIAPDAFKGLASLL 118 (498)
T ss_pred ccCCCcceEEEeccCCcccCChhhccchhhhceeccccc------------------------chhhcChHhhhhhHhhh
Confidence 345667777777777777666677777777766666554 44445566666666655
Q ss_pred EEEccc-ccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcC-CcCCCCCCEEeccCC
Q 037786 111 ELHLSQ-CNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD-IMNLTRISRLDISNN 188 (565)
Q Consensus 111 ~L~L~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~ 188 (565)
+|.+.+ |.|+.....+|.++..++.|.+.-|.+.....++|..++++..|.+..|.+..+... +..+..++.+.+..|
T Consensus 119 ~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 119 SLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred HHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcC
Confidence 555544 556655556666666666666666666555555566666666666666665544442 555555555555444
Q ss_pred c
Q 037786 189 Q 189 (565)
Q Consensus 189 ~ 189 (565)
.
T Consensus 199 p 199 (498)
T KOG4237|consen 199 P 199 (498)
T ss_pred c
Confidence 3
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-20 Score=192.65 Aligned_cols=260 Identities=24% Similarity=0.256 Sum_probs=212.2
Q ss_pred CCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEE
Q 037786 248 KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFIL 327 (565)
Q Consensus 248 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L 327 (565)
..-..|+++++.++ .+|..+. ++|+.|++.+|.++.. + ...++|++|++++|+++... ...++|+.|
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~L-P----~lp~~Lk~LdLs~N~LtsLP-----~lp~sL~~L 267 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSL-P----ALPPELRTLEVSGNQLTSLP-----VLPPGLLEL 267 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCC-C----CCCCCCcEEEecCCccCccc-----Cccccccee
Confidence 34567899999998 6777665 4899999999999853 3 23589999999999988542 235789999
Q ss_pred EcCCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCCCCCCCCeEEcCCCcccccC
Q 037786 328 SLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPL 407 (565)
Q Consensus 328 ~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~ 407 (565)
++++|.+..+|... ..|+.|++++|+++ .+|. .+++|+.|++++|+++.++. ...+|+.|++++|.+.. +
T Consensus 268 ~Ls~N~L~~Lp~lp--~~L~~L~Ls~N~Lt-~LP~-----~p~~L~~LdLS~N~L~~Lp~-lp~~L~~L~Ls~N~L~~-L 337 (788)
T PRK15387 268 SIFSNPLTHLPALP--SGLCKLWIFGNQLT-SLPV-----LPPGLQELSVSDNQLASLPA-LPSELCKLWAYNNQLTS-L 337 (788)
T ss_pred eccCCchhhhhhch--hhcCEEECcCCccc-cccc-----cccccceeECCCCccccCCC-CcccccccccccCcccc-c
Confidence 99999999887633 37999999999998 5664 24789999999999999865 34579999999999975 6
Q ss_pred CCCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcccCCCcccEEECCCCcccccC
Q 037786 408 PVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPL 487 (565)
Q Consensus 408 ~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~ls~n~l~~~~ 487 (565)
|..+++|++|++++|++++ +|. +| ++|+.|++++|.+..+|. ...+|+.|++++|.+++ +
T Consensus 338 P~lp~~Lq~LdLS~N~Ls~-LP~---------lp--------~~L~~L~Ls~N~L~~LP~-l~~~L~~LdLs~N~Lt~-L 397 (788)
T PRK15387 338 PTLPSGLQELSVSDNQLAS-LPT---------LP--------SELYKLWAYNNRLTSLPA-LPSGLKELIVSGNRLTS-L 397 (788)
T ss_pred cccccccceEecCCCccCC-CCC---------CC--------cccceehhhccccccCcc-cccccceEEecCCcccC-C
Confidence 6677899999999999984 222 11 688999999999998875 24689999999999986 6
Q ss_pred CCCCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCCCCCCCCCcccccCCCCcccc
Q 037786 488 LVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSPWCQTKWPSRWSATT 555 (565)
Q Consensus 488 ~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~l~~~~~~~~~~ 555 (565)
|..+++|+.|++++|.++. +|.. ..+|+.|++++|.+. .+|+.+..+++|+.+++.+..+.+.
T Consensus 398 P~l~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 398 PVLPSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred CCcccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCch
Confidence 6677899999999999985 5543 357899999999998 8999999999999999998766544
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-19 Score=187.40 Aligned_cols=243 Identities=25% Similarity=0.293 Sum_probs=126.5
Q ss_pred CCCEEEccCCcccccCCCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccC
Q 037786 227 LLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSH 306 (565)
Q Consensus 227 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~ 306 (565)
+...|+++++.+...+.. .++.++.|++++|.++ .+|..+. .+|+.|++++|.+... +. .+ .++|+.|++++
T Consensus 179 ~~~~L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsL-P~-~l--~~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLKILGLTTIPAC-IPEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTSI-PA-TL--PDTIQEMELSI 250 (754)
T ss_pred CceEEEeCCCCcCcCCcc-cccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccccC-Ch-hh--hccccEEECcC
Confidence 455666666666643322 2345666777776666 3444332 3666666666666532 22 11 23566666666
Q ss_pred CccccccCCcccCCCCCccEEEcCCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCcc
Q 037786 307 NSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMK 386 (565)
Q Consensus 307 ~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~ 386 (565)
|.+... +..+ ..+|+.|++++|+++.+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|.++.++
T Consensus 251 N~L~~L-P~~l---~s~L~~L~Ls~N~L~~LP~~l~-~sL~~L~Ls~N~Lt-~LP~~lp----~sL~~L~Ls~N~Lt~LP 320 (754)
T PRK15370 251 NRITEL-PERL---PSALQSLDLFHNKISCLPENLP-EELRYLSVYDNSIR-TLPAHLP----SGITHLNVQSNSLTALP 320 (754)
T ss_pred CccCcC-ChhH---hCCCCEEECcCCccCccccccC-CCCcEEECCCCccc-cCcccch----hhHHHHHhcCCccccCC
Confidence 665422 2211 2356666666666665554322 25666666666665 3443221 34566666666666555
Q ss_pred CCCCCCCCeEEcCCCcccccCCCCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCc
Q 037786 387 QIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMK 466 (565)
Q Consensus 387 ~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 466 (565)
....++|+.|++++|.+.+.....+++|+.|++++|+++. +|..+ . +.|++|++++|.+..+|
T Consensus 321 ~~l~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L~~-LP~~l--p--------------~~L~~LdLs~N~Lt~LP 383 (754)
T PRK15370 321 ETLPPGLKTLEAGENALTSLPASLPPELQVLDVSKNQITV-LPETL--P--------------PTITTLDVSRNALTNLP 383 (754)
T ss_pred ccccccceeccccCCccccCChhhcCcccEEECCCCCCCc-CChhh--c--------------CCcCEEECCCCcCCCCC
Confidence 4444556666666665554222234566666666665542 22211 1 45666666666666554
Q ss_pred ccCCCcccEEECCCCcccccCCC-------CCCCCcEeeccCceee
Q 037786 467 QISWKNLGYLDLRSNLLQGPLLV-------PPSSLRVILILNNQFT 505 (565)
Q Consensus 467 ~~~~~~L~~L~ls~n~l~~~~~~-------~~~~L~~L~l~~n~~~ 505 (565)
.....+|+.|++++|.+.. +|. ..+.+..|++.+|+++
T Consensus 384 ~~l~~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 384 ENLPAALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HhHHHHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCcc
Confidence 4222355566666665543 222 2345555666666554
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.3e-19 Score=182.87 Aligned_cols=245 Identities=25% Similarity=0.264 Sum_probs=159.8
Q ss_pred CCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEE
Q 037786 249 SLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILS 328 (565)
Q Consensus 249 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~ 328 (565)
+...|+++++.++ .+|..+. ++++.|++++|.++.. +... ..+|+.|++++|.++.. +..+ .+.|+.|+
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~LtsL-P~~l---~~nL~~L~Ls~N~LtsL-P~~l---~~~L~~L~ 247 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELKSL-PENL---QGNIKTLYANSNQLTSI-PATL---PDTIQEME 247 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCCcC-Chhh---ccCCCEEECCCCccccC-Chhh---hccccEEE
Confidence 4566777777776 4554443 4677788888777643 3222 24778888887777632 2222 34677788
Q ss_pred cCCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCCCCCCCCeEEcCCCcccccCC
Q 037786 329 LSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLP 408 (565)
Q Consensus 329 l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~ 408 (565)
+++|.+..+|..+. ..|+.|++++|+++ .+|..+. ++|+.|++++|+++.++....++|+.|++++|.+.....
T Consensus 248 Ls~N~L~~LP~~l~-s~L~~L~Ls~N~L~-~LP~~l~----~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~ 321 (754)
T PRK15370 248 LSINRITELPERLP-SALQSLDLFHNKIS-CLPENLP----EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPE 321 (754)
T ss_pred CcCCccCcCChhHh-CCCCEEECcCCccC-ccccccC----CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCc
Confidence 88887777765443 26778888877777 5665432 467888888887777765444567778888877775333
Q ss_pred CCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcccCCCcccEEECCCCcccccCC
Q 037786 409 VPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLL 488 (565)
Q Consensus 409 ~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~ls~n~l~~~~~ 488 (565)
..+++|++|++++|.+++ +|..+. ++|+.|++++|++..+|....++|+.|++++|.++. +|
T Consensus 322 ~l~~sL~~L~Ls~N~Lt~-LP~~l~----------------~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt~-LP 383 (754)
T PRK15370 322 TLPPGLKTLEAGENALTS-LPASLP----------------PELQVLDVSKNQITVLPETLPPTITTLDVSRNALTN-LP 383 (754)
T ss_pred cccccceeccccCCcccc-CChhhc----------------CcccEEECCCCCCCcCChhhcCCcCEEECCCCcCCC-CC
Confidence 346778888888887764 332221 677788888887776665444678888888887775 34
Q ss_pred C-CCCCCcEeeccCceeeeccchh----hhcCCCCCEEeCCCCcCc
Q 037786 489 V-PPSSLRVILILNNQFTGEIIHS----ICDIIALDVLDLSNNRLS 529 (565)
Q Consensus 489 ~-~~~~L~~L~l~~n~~~~~~~~~----l~~~~~L~~L~l~~n~~~ 529 (565)
. ...+|+.|++++|+++ .+|.. +...+++..|++.+|++.
T Consensus 384 ~~l~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 384 ENLPAALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HhHHHHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 3 4456777888888776 33433 334477778888888764
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.2e-17 Score=158.22 Aligned_cols=276 Identities=24% Similarity=0.234 Sum_probs=146.7
Q ss_pred EEEcCCCcCCCCCc-hhhhhcCCCccEEEccCCccccc----CCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEE
Q 037786 14 LLFLDYVDMSTVVP-GTLKNLSSSLTSLSLSYCRIQGE----FPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCL 88 (565)
Q Consensus 14 ~L~l~~~~~~~~~~-~~~~~l~~~L~~L~l~~~~i~~~----~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L 88 (565)
.|+|.++.+.+... ..+..+ .+|++++++++.++.. ++..+...+++++++++++ ......
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l-~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~~------------ 67 (319)
T cd00116 2 QLSLKGELLKTERATELLPKL-LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN-ETGRIP------------ 67 (319)
T ss_pred ccccccCcccccchHHHHHHH-hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccc-ccCCcc------------
Confidence 46777777764443 334444 7788899888887532 4445666777888888776 222100
Q ss_pred EccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCC---CCeeeccCCcccc----cCCcCccCC-CCCCEE
Q 037786 89 DVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQ---LAVLSLSFKSFSG----HIPPSLSNL-HQLTDV 160 (565)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~---L~~L~l~~~~~~~----~~~~~~~~l-~~L~~L 160 (565)
..+ ..++..+..+++|++|++++|.+....+..+..+.+ |++|++++|.+.+ .+...+..+ ++|+.+
T Consensus 68 ----~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L 142 (319)
T cd00116 68 ----RGL-QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKL 142 (319)
T ss_pred ----hHH-HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEE
Confidence 000 122333444555555555555544333333333333 5555555555441 111223333 555555
Q ss_pred EccCcccccc-----CcCCcCCCCCCEEeccCCccccc----CCCCCcCCCCCCEEEcccccccCC----CchhhcCCCC
Q 037786 161 DLGSNSFDGQ-----FPDIMNLTRISRLDISNNQLTGS----IPSHGSGLQNLAVLRLYNNTLSGT----IPSWLFTLPL 227 (565)
Q Consensus 161 ~l~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~----~~~~l~~~~~ 227 (565)
++++|.+... ...+..+++|+.|++++|.+.+. .+..+..++.|+.|++++|.+.+. ....+..+++
T Consensus 143 ~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~ 222 (319)
T cd00116 143 VLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKS 222 (319)
T ss_pred EcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCC
Confidence 5555555411 11134445566666666555421 112233345666666666655422 2233445666
Q ss_pred CCEEEccCCcccccCCC-------CCCCCCcEEEccCCccccC----CchhhhcCCCcCccccccccccCccC---hHhh
Q 037786 228 LRDIDLSDNQLTGHLDA-------FPSKSLRKLYLTNNRLHGS----IPSSIFELANLTYLSLASNNFSGIVE---PYML 293 (565)
Q Consensus 228 L~~L~l~~~~~~~~~~~-------~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~---~~~l 293 (565)
|+.|++++|.+.+.... ...+.|++|++.+|.+++. +...+..+++|+.+++++|.+..... ...+
T Consensus 223 L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~ 302 (319)
T cd00116 223 LEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESL 302 (319)
T ss_pred CCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHH
Confidence 77777777766531100 0236777888887777632 23345556788888888888874411 1233
Q ss_pred hcC-CCCCEEEccCCc
Q 037786 294 AKL-VNLAALELSHNS 308 (565)
Q Consensus 294 ~~~-~~L~~L~l~~~~ 308 (565)
... +.|+++++.+++
T Consensus 303 ~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 303 LEPGNELESLWVKDDS 318 (319)
T ss_pred hhcCCchhhcccCCCC
Confidence 444 678888887765
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.5e-17 Score=157.07 Aligned_cols=251 Identities=22% Similarity=0.207 Sum_probs=174.7
Q ss_pred CCcEEEccCCccCc----cCCccccCCCCCCEEEcccccCcc------cCchhccCCCCCCeeeccCCcccccCCcCccC
Q 037786 84 PLRCLDVSGTRFSG----QLPDSICNLRHLRELHLSQCNFYG------FLPASLGNVTQLAVLSLSFKSFSGHIPPSLSN 153 (565)
Q Consensus 84 ~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~L~~~~~~~------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 153 (565)
.|++++++++.++. .++..+...+++++++++++.+.. ..+..+..+++|+.|++++|.+....+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 34445555554432 234455667778888888776652 23456778999999999999987555555554
Q ss_pred CC---CCCEEEccCcccccc-----CcCCcCC-CCCCEEeccCCccccc----CCCCCcCCCCCCEEEcccccccCC---
Q 037786 154 LH---QLTDVDLGSNSFDGQ-----FPDIMNL-TRISRLDISNNQLTGS----IPSHGSGLQNLAVLRLYNNTLSGT--- 217 (565)
Q Consensus 154 l~---~L~~L~l~~~~~~~~-----~~~~~~~-~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~--- 217 (565)
+. +|+.|++++|.+... ...+..+ ++|+.+++++|.+++. ....+..+++|++|++++|.+.+.
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 183 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR 183 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence 44 499999999988631 1124566 8999999999998732 334566778999999999988743
Q ss_pred -CchhhcCCCCCCEEEccCCcccccCC------CCCCCCCcEEEccCCccccCCchhhhc-----CCCcCcccccccccc
Q 037786 218 -IPSWLFTLPLLRDIDLSDNQLTGHLD------AFPSKSLRKLYLTNNRLHGSIPSSIFE-----LANLTYLSLASNNFS 285 (565)
Q Consensus 218 -~~~~l~~~~~L~~L~l~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~n~~~ 285 (565)
....+..+++|+.|++++|.+.+... ....++|++|++++|.+++.....+.. .+.|++|++++|.++
T Consensus 184 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 184 ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 22334566799999999998864321 115688999999999988633333322 379999999999986
Q ss_pred CccC---hHhhhcCCCCCEEEccCCccccccCCcc---cCCC-CCccEEEcCCCCC
Q 037786 286 GIVE---PYMLAKLVNLAALELSHNSLSFGTTSKV---NSSF-PQIFILSLSACNI 334 (565)
Q Consensus 286 ~~~~---~~~l~~~~~L~~L~l~~~~i~~~~~~~~---~~~~-~~L~~L~l~~~~l 334 (565)
+... ...+..+++|+.+++++|.++......+ .... +.++.+++.++.+
T Consensus 264 ~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 264 DDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred cHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 3221 2345667899999999999986533322 2334 6788888887753
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.3e-17 Score=130.39 Aligned_cols=156 Identities=30% Similarity=0.419 Sum_probs=118.6
Q ss_pred CCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEc
Q 037786 35 SSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHL 114 (565)
Q Consensus 35 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 114 (565)
.+++.|.+|+|+++ ..|..++.+.+|+.|+++.| .+.+.......+++|++|+++-|++. ..|..|+.+|.|+.||+
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence 56777888888887 66667888888888888877 55666666666677777777777766 67888888888888888
Q ss_pred ccccCc-ccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcCCcCCCCCCEEeccCCccccc
Q 037786 115 SQCNFY-GFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGS 193 (565)
Q Consensus 115 ~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 193 (565)
+.|.+. ...|..|..+..|+-|++++|.+. .+|..++++++|+.|.+..|.+...+.+++.+..|++|.+++|+++ .
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~-v 187 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT-V 187 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee-e
Confidence 877753 456777777788888888888776 6777788888888888888877767777778888888888888777 4
Q ss_pred CC
Q 037786 194 IP 195 (565)
Q Consensus 194 ~~ 195 (565)
+|
T Consensus 188 lp 189 (264)
T KOG0617|consen 188 LP 189 (264)
T ss_pred cC
Confidence 44
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.2e-16 Score=126.99 Aligned_cols=165 Identities=26% Similarity=0.440 Sum_probs=146.2
Q ss_pred CCCCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcE
Q 037786 8 NVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRC 87 (565)
Q Consensus 8 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~ 87 (565)
.+.+++.|.+|+|.++...+ .+..+ .+|++|++++|+|+ ..|..++.+++|+.|++.-| .+......+...+.|+.
T Consensus 31 ~~s~ITrLtLSHNKl~~vpp-nia~l-~nlevln~~nnqie-~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPP-NIAEL-KNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEV 106 (264)
T ss_pred chhhhhhhhcccCceeecCC-cHHHh-hhhhhhhcccchhh-hcChhhhhchhhhheecchh-hhhcCccccCCCchhhh
Confidence 46678899999999987766 46777 89999999999998 78999999999999999988 77778888888899999
Q ss_pred EEccCCccC-ccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCcc
Q 037786 88 LDVSGTRFS-GQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNS 166 (565)
Q Consensus 88 L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 166 (565)
||+++|.+. ..+|..|..+..|+-|+++.|.+. ..|..++++++||.|.+..|.+. .+|..++.++.|++|.+.+|+
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence 999999875 467888888999999999999986 77888999999999999999987 689999999999999999999
Q ss_pred ccccCcCCcCCC
Q 037786 167 FDGQFPDIMNLT 178 (565)
Q Consensus 167 ~~~~~~~~~~~~ 178 (565)
++..+++++.+.
T Consensus 185 l~vlppel~~l~ 196 (264)
T KOG0617|consen 185 LTVLPPELANLD 196 (264)
T ss_pred eeecChhhhhhh
Confidence 998888766543
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-12 Score=122.27 Aligned_cols=195 Identities=21% Similarity=0.192 Sum_probs=93.8
Q ss_pred cCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCch---hhcc-ccceEeccCCcCcccCChhhhhhCCC
Q 037786 295 KLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSF---LRSL-ELAYLDLSENNIDGQIPNWMWEVGKD 370 (565)
Q Consensus 295 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~---~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~ 370 (565)
++.+|+++.+.++.+...........++.++.|++++|-+..+... +... +|+.|+++.|.+..-... ......+
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s-~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS-NTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc-cchhhhh
Confidence 3445555666665555443333445556666666666554432221 1111 556666666655421111 1111335
Q ss_pred CccEEEcCCCccCCccC----CCCCCCCeEEcCCCccc-cc--CCCCCCCCcEEEccccccCc-cchhhhhhcCCCCCCc
Q 037786 371 TLSFLDLSHNFITEMKQ----IPWKNLKYLKLQSNLLQ-GP--LPVPPPRLQFLLASNNQFTG-EIIQSICSSSTLEIPS 442 (565)
Q Consensus 371 ~L~~L~ls~n~l~~~~~----~~~~~L~~L~l~~n~~~-~~--~~~~~~~L~~L~l~~n~i~~-~~~~~l~~~~~~~~~~ 442 (565)
++++|.++.|.++.-.. ..||+|+.|++..|... .. ....+..|+.|||++|.+.. .....+..+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l------- 270 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTL------- 270 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccc-------
Confidence 66666666666653222 25677777777666321 11 11125666666666665542 111223333
Q ss_pred cccccCCCCCcEEeCcCCCCCCC--cc-------cCCCcccEEECCCCcccc--cCCC--CCCCCcEeeccCcee
Q 037786 443 WISEIGKDSLSYLNLSHNFITKM--KQ-------ISWKNLGYLDLRSNLLQG--PLLV--PPSSLRVILILNNQF 504 (565)
Q Consensus 443 ~~~~~~~~~L~~L~l~~n~l~~~--~~-------~~~~~L~~L~ls~n~l~~--~~~~--~~~~L~~L~l~~n~~ 504 (565)
+.|..|+++.|.+..+ |+ ..+++|+.|+++.|++.+ .+.+ .+.+|+.|.+..|.+
T Consensus 271 -------~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 271 -------PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred -------cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 5666666666666655 32 234555555555555533 1111 444445555444444
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.1e-12 Score=115.41 Aligned_cols=195 Identities=22% Similarity=0.221 Sum_probs=100.6
Q ss_pred hhhcCCCCCEEEccCCccccccCCcc---cCCCCCccEEEcCCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhC
Q 037786 292 MLAKLVNLAALELSHNSLSFGTTSKV---NSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVG 368 (565)
Q Consensus 292 ~l~~~~~L~~L~l~~~~i~~~~~~~~---~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 368 (565)
.+..+++|+++++|+|-+...+++.+ ..++..|++|++.+|.+.......-...|..+. .+... + .
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~--~~kk~---~------~ 155 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA--VNKKA---A------S 155 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH--HHhcc---C------C
Confidence 45556677777777776654444332 345666777777777665322211111222222 11111 0 2
Q ss_pred CCCccEEEcCCCccCCccCC-------CCCCCCeEEcCCCcccccCCCCCCCCcEEEccccccCccchhhhhhcCCCCCC
Q 037786 369 KDTLSFLDLSHNFITEMKQI-------PWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIP 441 (565)
Q Consensus 369 ~~~L~~L~ls~n~l~~~~~~-------~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~ 441 (565)
.+.|+.+....|++.+-+.. ..+.|+.+.+..|.|....- ......+.++
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~-----------------~al~eal~~~------ 212 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV-----------------TALAEALEHC------ 212 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchh-----------------HHHHHHHHhC------
Confidence 35555665555555544441 22455555555554432111 1223344444
Q ss_pred ccccccCCCCCcEEeCcCCCCCCCc-c------cCCCcccEEECCCCcccccC--------CCCCCCCcEeeccCceeee
Q 037786 442 SWISEIGKDSLSYLNLSHNFITKMK-Q------ISWKNLGYLDLRSNLLQGPL--------LVPPSSLRVILILNNQFTG 506 (565)
Q Consensus 442 ~~~~~~~~~~L~~L~l~~n~l~~~~-~------~~~~~L~~L~ls~n~l~~~~--------~~~~~~L~~L~l~~n~~~~ 506 (565)
++|+.|||.+|.++... . ..|++|+++++++|-+.+.- -...++|+.|.+.+|.++-
T Consensus 213 --------~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~ 284 (382)
T KOG1909|consen 213 --------PHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITR 284 (382)
T ss_pred --------CcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHH
Confidence 66666666666555441 1 55666666666666654211 1155666777777766653
Q ss_pred c----cchhhhcCCCCCEEeCCCCcC
Q 037786 507 E----IIHSICDIIALDVLDLSNNRL 528 (565)
Q Consensus 507 ~----~~~~l~~~~~L~~L~l~~n~~ 528 (565)
. +..+....+.|++|+|++|.+
T Consensus 285 da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 285 DAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHHHHhcchhhHHhcCCcccc
Confidence 3 334455667888888888887
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.7e-12 Score=118.95 Aligned_cols=115 Identities=28% Similarity=0.261 Sum_probs=48.4
Q ss_pred cCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCC--Cchhhccccc
Q 037786 270 ELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAF--PSFLRSLELA 347 (565)
Q Consensus 270 ~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l--~~~~~~~~L~ 347 (565)
.+|+|+.|+++.|.+........-..+++|+.|.+++|.++..........+|+++.|++.+|....+ ......+.|+
T Consensus 170 qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~ 249 (505)
T KOG3207|consen 170 QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ 249 (505)
T ss_pred hcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence 44555555555555443322222234445555555555554333333334455555555555531100 0111111455
Q ss_pred eEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCc
Q 037786 348 YLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEM 385 (565)
Q Consensus 348 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ 385 (565)
.|++++|++. ..++......++.|+.|+++.|.+.++
T Consensus 250 ~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si 286 (505)
T KOG3207|consen 250 ELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASI 286 (505)
T ss_pred hccccCCccc-ccccccccccccchhhhhccccCcchh
Confidence 5555555544 222222222344455555555544444
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.8e-11 Score=100.60 Aligned_cols=101 Identities=27% Similarity=0.237 Sum_probs=25.4
Q ss_pred CCccEEEcCCCccCCccCC--CCCCCCeEEcCCCcccccCC-CCCCCCcEEEccccccCccchhhhhhcCCCCCCccccc
Q 037786 370 DTLSFLDLSHNFITEMKQI--PWKNLKYLKLQSNLLQGPLP-VPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISE 446 (565)
Q Consensus 370 ~~L~~L~ls~n~l~~~~~~--~~~~L~~L~l~~n~~~~~~~-~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~ 446 (565)
..+++|+|++|.|+.+... .+.+|+.|++++|.+..... ..++.|++|++++|+|+.........+
T Consensus 19 ~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~l----------- 87 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNL----------- 87 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH------------
T ss_pred cccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhC-----------
Confidence 4455666666666555443 24556666666666554221 125556666666666654322111234
Q ss_pred cCCCCCcEEeCcCCCCCCCcc----cCCCcccEEECCCCccc
Q 037786 447 IGKDSLSYLNLSHNFITKMKQ----ISWKNLGYLDLRSNLLQ 484 (565)
Q Consensus 447 ~~~~~L~~L~l~~n~l~~~~~----~~~~~L~~L~ls~n~l~ 484 (565)
|+|++|++++|+|.++.. ..+++|+.|++.+|++.
T Consensus 88 ---p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 88 ---PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp ---TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred ---CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 566666666666655521 44555555555555544
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.6e-12 Score=115.79 Aligned_cols=232 Identities=20% Similarity=0.224 Sum_probs=129.1
Q ss_pred HHhhCCCCCcEEEcCCCcCCCCCchhhhhcC---CCccEEEccCCcccc----cC-------CccccCCCCCCEEecCCC
Q 037786 4 ALVQNVTKLQLLFLDYVDMSTVVPGTLKNLS---SSLTSLSLSYCRIQG----EF-------PENIFRLSNLQMVRLKFN 69 (565)
Q Consensus 4 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~---~~L~~L~l~~~~i~~----~~-------~~~~~~l~~L~~L~L~~~ 69 (565)
..+..+..++.+++|+|.+......++.... ++|+..++++- +++ .+ ..++..+++|++|+||.|
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 4455667777788888877765544443332 45666666553 222 11 233445566666666665
Q ss_pred CCCCccCCCCCCCCCCcEEEccCCccCccCC----ccccCCCCCCEEEcccccCcccCchh-------------ccCCCC
Q 037786 70 SNLSGVFPRSNWTSPLRCLDVSGTRFSGQLP----DSICNLRHLRELHLSQCNFYGFLPAS-------------LGNVTQ 132 (565)
Q Consensus 70 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~L~~~~~~~~~~~~-------------~~~l~~ 132 (565)
-+....+ ..+.++..|++|.|.+|.+....... .+.-+.
T Consensus 103 ------------------------A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~ 158 (382)
T KOG1909|consen 103 ------------------------AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPK 158 (382)
T ss_pred ------------------------ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcc
Confidence 3221111 22345666666666666654322222 233456
Q ss_pred CCeeeccCCccccc----CCcCccCCCCCCEEEccCccccccC-----cCCcCCCCCCEEeccCCccccc----CCCCCc
Q 037786 133 LAVLSLSFKSFSGH----IPPSLSNLHQLTDVDLGSNSFDGQF-----PDIMNLTRISRLDISNNQLTGS----IPSHGS 199 (565)
Q Consensus 133 L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~----~~~~~~ 199 (565)
|+++...+|++... +...|...+.|+.+.+..|.+.... ..+..+++|+.|++.+|.++.. +...++
T Consensus 159 Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~ 238 (382)
T KOG1909|consen 159 LRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALS 238 (382)
T ss_pred eEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhc
Confidence 77777777765522 2334555667777777777664211 1256677777777777766522 334455
Q ss_pred CCCCCCEEEcccccccCCCchhh-----cCCCCCCEEEccCCcccccCC------CCCCCCCcEEEccCCcc
Q 037786 200 GLQNLAVLRLYNNTLSGTIPSWL-----FTLPLLRDIDLSDNQLTGHLD------AFPSKSLRKLYLTNNRL 260 (565)
Q Consensus 200 ~~~~L~~L~l~~~~l~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~------~~~~~~L~~L~l~~~~~ 260 (565)
.+++|+.+++++|.+.......+ ...|+|+++.+.+|.+..... ....+.|+.|++++|.+
T Consensus 239 s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 239 SWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 56677777777776653322222 135677777777777653211 11356777777777777
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.2e-11 Score=101.66 Aligned_cols=130 Identities=29% Similarity=0.306 Sum_probs=38.8
Q ss_pred CCCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCC-CCCCCCeEEcCCCcccccCCC-
Q 037786 332 CNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI-PWKNLKYLKLQSNLLQGPLPV- 409 (565)
Q Consensus 332 ~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~l~~n~~~~~~~~- 409 (565)
+.|..++.......+++|++.+|.++ .+..... .+.+|+.|++++|.++++... .++.|+.|++++|++....+.
T Consensus 7 ~~i~~~~~~~n~~~~~~L~L~~n~I~-~Ie~L~~--~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l 83 (175)
T PF14580_consen 7 NMIEQIAQYNNPVKLRELNLRGNQIS-TIENLGA--TLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGL 83 (175)
T ss_dssp ------------------------------S--T--T-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHH
T ss_pred cccccccccccccccccccccccccc-cccchhh--hhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccch
Confidence 33334444333335566666666665 2221111 235666666666666666653 556677777777776654321
Q ss_pred --CCCCCcEEEccccccCccc-hhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcc------cCCCcccEEEC
Q 037786 410 --PPPRLQFLLASNNQFTGEI-IQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQ------ISWKNLGYLDL 478 (565)
Q Consensus 410 --~~~~L~~L~l~~n~i~~~~-~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~------~~~~~L~~L~l 478 (565)
.+|+|++|++++|+|.... ...+..+ ++|++|++.+|+++..+. ..+|+|+.||-
T Consensus 84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l--------------~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNKISDLNELEPLSSL--------------PKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp HHH-TT--EEE-TTS---SCCCCGGGGG---------------TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred HHhCCcCCEEECcCCcCCChHHhHHHHcC--------------CCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 2667777777777665421 2334444 777778887777776643 55677777754
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.1e-11 Score=108.33 Aligned_cols=125 Identities=25% Similarity=0.336 Sum_probs=72.5
Q ss_pred CCCCCCeEEcCCCcccccCCC--CCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCc
Q 037786 389 PWKNLKYLKLQSNLLQGPLPV--PPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMK 466 (565)
Q Consensus 389 ~~~~L~~L~l~~n~~~~~~~~--~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 466 (565)
.|..|+.+|+++|.|...... ..|.++.|++++|.|.. .+.+..+ ++|.+||+|+|.++.+.
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~--v~nLa~L--------------~~L~~LDLS~N~Ls~~~ 345 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT--VQNLAEL--------------PQLQLLDLSGNLLAECV 345 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceee--ehhhhhc--------------ccceEeecccchhHhhh
Confidence 344455555555555432211 25666666666666552 2224555 66666666666666663
Q ss_pred c--cCCCcccEEECCCCcccccCCC-CCCCCcEeeccCceeeec-cchhhhcCCCCCEEeCCCCcCc
Q 037786 467 Q--ISWKNLGYLDLRSNLLQGPLLV-PPSSLRVILILNNQFTGE-IIHSICDIIALDVLDLSNNRLS 529 (565)
Q Consensus 467 ~--~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~~~ 529 (565)
. ..+-+.+.|.+++|.+.+..-. .+=+|..||+++|+|... -...++++|-|+.+.|.+||+.
T Consensus 346 Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 346 GWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 2 4455666666776666442211 556666777777776433 2356677777778888888776
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.8e-12 Score=121.46 Aligned_cols=203 Identities=26% Similarity=0.250 Sum_probs=158.3
Q ss_pred EEcCCCCCCCCCchhhcc---ccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCC--CCCCCCeEEcCCC
Q 037786 327 LSLSACNISAFPSFLRSL---ELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI--PWKNLKYLKLQSN 401 (565)
Q Consensus 327 L~l~~~~l~~l~~~~~~~---~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~l~~n 401 (565)
|.+++-++..+|...... .-...+++.|.+. ++|..... +..|+.+.+..|.+..++.. .+..|+.+|++.|
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~--f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N 131 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEACA--FVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN 131 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccc-cCchHHHH--HHHHHHHHHHhccceecchhhhhhhHHHHhhhccc
Confidence 445555555555433333 3457789999998 88877664 47799999999999988884 7788999999999
Q ss_pred cccccCCCC-CCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcc--cCCCcccEEEC
Q 037786 402 LLQGPLPVP-PPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQ--ISWKNLGYLDL 478 (565)
Q Consensus 402 ~~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l 478 (565)
+++...... .--|+.|.+++|+++ .+|..+... +.|..||.+.|.+..+|. +.+.+|+.|++
T Consensus 132 qlS~lp~~lC~lpLkvli~sNNkl~-~lp~~ig~~--------------~tl~~ld~s~nei~slpsql~~l~slr~l~v 196 (722)
T KOG0532|consen 132 QLSHLPDGLCDLPLKVLIVSNNKLT-SLPEEIGLL--------------PTLAHLDVSKNEIQSLPSQLGYLTSLRDLNV 196 (722)
T ss_pred hhhcCChhhhcCcceeEEEecCccc-cCCcccccc--------------hhHHHhhhhhhhhhhchHHhhhHHHHHHHHH
Confidence 987543332 455899999999998 667777666 899999999999999954 88899999999
Q ss_pred CCCcccccCCC-CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCCCCCCCCCcccccCC
Q 037786 479 RSNLLQGPLLV-PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSPWCQTKWPS 549 (565)
Q Consensus 479 s~n~l~~~~~~-~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~l~~~~ 549 (565)
..|.+....++ ..-.|..||+|.|+++ .+|-+|..|..|++|-|.+||++ .-|..+--.-..++.+|..
T Consensus 197 rRn~l~~lp~El~~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~ 266 (722)
T KOG0532|consen 197 RRNHLEDLPEELCSLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLS 266 (722)
T ss_pred hhhhhhhCCHHHhCCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeec
Confidence 99998774444 5667889999999998 67888999999999999999998 7777765555666666655
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.7e-12 Score=120.24 Aligned_cols=187 Identities=25% Similarity=0.266 Sum_probs=149.7
Q ss_pred CCCccEEEcCCCCCCCCCchhhcc-ccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCCCC-CCCCeEEc
Q 037786 321 FPQIFILSLSACNISAFPSFLRSL-ELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPW-KNLKYLKL 398 (565)
Q Consensus 321 ~~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~-~~L~~L~l 398 (565)
+.--...+++.|++..+|..+... .|+.+.+..|.+. .+|..+.. ...|+.+|++.|++..++...| --|+.|-+
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~--L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~ 150 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICN--LEALTFLDLSSNQLSHLPDGLCDLPLKVLIV 150 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhh--hhHHHHhhhccchhhcCChhhhcCcceeEEE
Confidence 344456789999999998777666 8999999999998 78888774 5889999999999999998643 35899999
Q ss_pred CCCcccccCCC--CCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcc-cCCCcccE
Q 037786 399 QSNLLQGPLPV--PPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQ-ISWKNLGY 475 (565)
Q Consensus 399 ~~n~~~~~~~~--~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~ 475 (565)
++|++.....+ ..+.|..||.+.|.+. ..+..++.+ ..|+.|.+..|.+.++|. -..-.|..
T Consensus 151 sNNkl~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l--------------~slr~l~vrRn~l~~lp~El~~LpLi~ 215 (722)
T KOG0532|consen 151 SNNKLTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYL--------------TSLRDLNVRRNHLEDLPEELCSLPLIR 215 (722)
T ss_pred ecCccccCCcccccchhHHHhhhhhhhhh-hchHHhhhH--------------HHHHHHHHhhhhhhhCCHHHhCCceee
Confidence 99998854333 3889999999999997 577778887 899999999999999965 22457899
Q ss_pred EECCCCcccccCCC---CCCCCcEeeccCceeeeccchhhhcCCC---CCEEeCCCCc
Q 037786 476 LDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEIIHSICDIIA---LDVLDLSNNR 527 (565)
Q Consensus 476 L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~---L~~L~l~~n~ 527 (565)
||+|+|+++. +|. .+..|++|-|.+|+++ ..|..++..-. -++|++.-|.
T Consensus 216 lDfScNkis~-iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 216 LDFSCNKISY-LPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred eecccCceee-cchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 9999999987 444 8999999999999998 45555554433 3577777774
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.2e-10 Score=103.66 Aligned_cols=139 Identities=24% Similarity=0.256 Sum_probs=107.2
Q ss_pred CCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCCCCCCCcEEEccCCccccCCchhhhcCCCcCc
Q 037786 197 HGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTY 276 (565)
Q Consensus 197 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 276 (565)
.+...+.|+++|++.|.++ .+.+...-.|.++.|++++|.+.........++|+.|++++|.++ ....|-..+-+++.
T Consensus 279 ~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKT 356 (490)
T ss_pred ecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhH-hhhhhHhhhcCEee
Confidence 3445577888888888887 455566777888888888888886665557788888888888887 45556667788999
Q ss_pred cccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCch
Q 037786 277 LSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSF 340 (565)
Q Consensus 277 L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~ 340 (565)
|.+++|.+... ..+..+-+|..|++++|+|.......-.+.+|.|+++.+.+|.+..++..
T Consensus 357 L~La~N~iE~L---SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 357 LKLAQNKIETL---SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred eehhhhhHhhh---hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence 99999988754 45778888999999999887555444458889999999999998866653
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.1e-09 Score=109.84 Aligned_cols=168 Identities=29% Similarity=0.371 Sum_probs=89.4
Q ss_pred CCccEEEcCCCCCCCCCchhhcc--ccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCC--CCCCCCeEE
Q 037786 322 PQIFILSLSACNISAFPSFLRSL--ELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI--PWKNLKYLK 397 (565)
Q Consensus 322 ~~L~~L~l~~~~l~~l~~~~~~~--~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~ 397 (565)
+.+..+++.++.++.++...... +|+.|++++|.+. .++..+. .++.|+.|++++|++.+++.. ..++|+.|+
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~--~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLR--NLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhh--ccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 55667777777777666655554 5666666666666 3332222 346666666666666666664 555666666
Q ss_pred cCCCcccccCCC--CCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC--cccCCCcc
Q 037786 398 LQSNLLQGPLPV--PPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM--KQISWKNL 473 (565)
Q Consensus 398 l~~n~~~~~~~~--~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~L 473 (565)
+++|++....+. .+..|+++.+++|++. ..+..+... .++..|.+.+|++... ....++++
T Consensus 193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~--------------~~l~~l~l~~n~~~~~~~~~~~l~~l 257 (394)
T COG4886 193 LSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNL--------------KNLSGLELSNNKLEDLPESIGNLSNL 257 (394)
T ss_pred ccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhc--------------ccccccccCCceeeeccchhcccccc
Confidence 666666543333 2444555656555322 223333333 4555555555555553 22444455
Q ss_pred cEEECCCCcccccCCC-CCCCCcEeeccCceeeec
Q 037786 474 GYLDLRSNLLQGPLLV-PPSSLRVILILNNQFTGE 507 (565)
Q Consensus 474 ~~L~ls~n~l~~~~~~-~~~~L~~L~l~~n~~~~~ 507 (565)
+.|++++|.++..... ...+++.|++++|.++..
T Consensus 258 ~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 258 ETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ceeccccccccccccccccCccCEEeccCcccccc
Confidence 5555555555442212 445555555555555433
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.6e-10 Score=119.51 Aligned_cols=268 Identities=26% Similarity=0.285 Sum_probs=154.4
Q ss_pred CCccEEEccCCcccccCCccccCCCCCCEEecCCCCC-CC-ccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEE
Q 037786 35 SSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSN-LS-GVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLREL 112 (565)
Q Consensus 35 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~-~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 112 (565)
...+...+.++.+. ..+.+. .+++|++|-+..+.. .. .....+..++.|++||+++|.-.+.+|..++++-+||+|
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 45677777777765 344433 345788888877732 22 222225556888888888876555788888888888888
Q ss_pred EcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCc---CCcCCCCCCEEeccCCc
Q 037786 113 HLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFP---DIMNLTRISRLDISNNQ 189 (565)
Q Consensus 113 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~~~L~~L~l~~~~ 189 (565)
+++++.+. ..|..+++++.|.+|++..+.....++.....+++|++|.+.......... .+..+.+|+.+......
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence 88888877 678888888888888888876655556666778888888886654221111 14445555555443322
Q ss_pred ccccCCCCCcCCCCCC----EEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCC-------C-CCCCcEEEccC
Q 037786 190 LTGSIPSHGSGLQNLA----VLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF-------P-SKSLRKLYLTN 257 (565)
Q Consensus 190 ~~~~~~~~~~~~~~L~----~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-------~-~~~L~~L~l~~ 257 (565)
.. ....+..++.|. .+.+.++... .....+..+.+|+.|.+.++.+.+..... . ++.+..+.+.+
T Consensus 680 ~~--~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~ 756 (889)
T KOG4658|consen 680 VL--LLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILN 756 (889)
T ss_pred hH--hHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhc
Confidence 20 001112222222 2222222221 33445666777788888777775322211 1 22333333334
Q ss_pred CccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccc
Q 037786 258 NRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLS 310 (565)
Q Consensus 258 ~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 310 (565)
|... ..+.+..-.++|+.+.+..|.....+.+ ....+..++.+.+..+.+.
T Consensus 757 ~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~-~~k~~~~l~~~i~~f~~~~ 807 (889)
T KOG4658|consen 757 CHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIP-KLKALLELKELILPFNKLE 807 (889)
T ss_pred cccc-cccchhhccCcccEEEEecccccccCCC-HHHHhhhcccEEecccccc
Confidence 4322 2233344557788888887776555433 3444555555444444443
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.85 E-value=4.1e-09 Score=105.69 Aligned_cols=194 Identities=29% Similarity=0.395 Sum_probs=101.1
Q ss_pred EEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCC-CCCeeeccCCcccccCCcCccCCCCCCEEEccCc
Q 037786 87 CLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVT-QLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSN 165 (565)
Q Consensus 87 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (565)
.+++..+.+. .....+...+.++.|++.++.++.. +....... +|+.|+++++.+. .++..+..+++|+.|+++.|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccccC-ccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 3455555443 1122334445566666666655532 22233332 5666666666655 33345555666666666666
Q ss_pred cccccCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCC-C
Q 037786 166 SFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLD-A 244 (565)
Q Consensus 166 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~ 244 (565)
++....+..+..+.|+.+++++|++. .++........|+++.+++|.+. ..+..+..+.++..+.+.+|++..... .
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~~ 251 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESI 251 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccchh
Confidence 66544444445666666666666655 33333333344666666666432 233445555555566666665554222 2
Q ss_pred CCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCc
Q 037786 245 FPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGI 287 (565)
Q Consensus 245 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 287 (565)
...+.++.|++++|.++. ++. +....+++.++++++.+...
T Consensus 252 ~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 252 GNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ccccccceeccccccccc-ccc-ccccCccCEEeccCcccccc
Confidence 234446666666666663 222 55566666666666666543
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.8e-08 Score=105.72 Aligned_cols=108 Identities=24% Similarity=0.248 Sum_probs=93.6
Q ss_pred CCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cc--cCCCcccEEECCCCcccccCCC
Q 037786 413 RLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQ--ISWKNLGYLDLRSNLLQGPLLV 489 (565)
Q Consensus 413 ~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~ls~n~l~~~~~~ 489 (565)
.++.|+|++|.+.+..+..++.+ ++|+.|+|++|.+.+. |. ..+++|+.|++++|.+++.+|.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L--------------~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~ 484 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKL--------------RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE 484 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCC--------------CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCch
Confidence 47889999999999999999888 9999999999999866 64 7889999999999999987776
Q ss_pred ---CCCCCcEeeccCceeeeccchhhhcC-CCCCEEeCCCCcCcccCCC
Q 037786 490 ---PPSSLRVILILNNQFTGEIIHSICDI-IALDVLDLSNNRLSGTIPK 534 (565)
Q Consensus 490 ---~~~~L~~L~l~~n~~~~~~~~~l~~~-~~L~~L~l~~n~~~~~~p~ 534 (565)
.+++|+.|++++|.+++.+|..+... .++..+++.+|+..|..|.
T Consensus 485 ~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 485 SLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred HHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 88999999999999999999888764 5778999999998876653
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.6e-09 Score=108.67 Aligned_cols=245 Identities=26% Similarity=0.197 Sum_probs=136.6
Q ss_pred hcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCchhhccccce
Q 037786 269 FELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAY 348 (565)
Q Consensus 269 ~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~ 348 (565)
..+..++.+.++.|.+... ...+..+.+|+.+++.+|.+...... ...+++|++|++++|.|+.+........|+.
T Consensus 69 ~~l~~l~~l~l~~n~i~~~--~~~l~~~~~l~~l~l~~n~i~~i~~~--l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~ 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKI--LNHLSKLKSLEALDLYDNKIEKIENL--LSSLVNLQVLDLSFNKITKLEGLSTLTLLKE 144 (414)
T ss_pred HHhHhHHhhccchhhhhhh--hcccccccceeeeeccccchhhcccc--hhhhhcchheeccccccccccchhhccchhh
Confidence 3455666666777766542 12356667777777777766533221 2456667777777777766655554445666
Q ss_pred EeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccC---CCCCCCCeEEcCCCcccccCCCC-CCCCcEEEcccccc
Q 037786 349 LDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQ---IPWKNLKYLKLQSNLLQGPLPVP-PPRLQFLLASNNQF 424 (565)
Q Consensus 349 L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~l~~n~~~~~~~~~-~~~L~~L~l~~n~i 424 (565)
|++++|.++ .+...- .+..|+.+++++|.++.+.. ..+.+++.+++.+|.+....... ...+..+++..|.+
T Consensus 145 L~l~~N~i~-~~~~~~---~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 145 LNLSGNLIS-DISGLE---SLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred heeccCcch-hccCCc---cchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccc
Confidence 666666665 222211 14566666666666666666 45566666666666655322221 33344445555555
Q ss_pred CccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCc-c-cCCCcccEEECCCCcccccC-CCCCCCCcEeeccC
Q 037786 425 TGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMK-Q-ISWKNLGYLDLRSNLLQGPL-LVPPSSLRVILILN 501 (565)
Q Consensus 425 ~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~-~~~~~L~~L~ls~n~l~~~~-~~~~~~L~~L~l~~ 501 (565)
+...+...... ..|+++++++|.+...+ . ..+..+..++++.|++...- ......+..+....
T Consensus 221 ~~~~~l~~~~~--------------~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~ 286 (414)
T KOG0531|consen 221 SKLEGLNELVM--------------LHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEGLERLPKLSELWLND 286 (414)
T ss_pred eeccCcccchh--------------HHHHHHhcccCccccccccccccccccccchhhccccccccccccchHHHhccCc
Confidence 42221111000 12677777777777662 2 55667777777777765422 22566666666666
Q ss_pred ceeeec--cch--hhhcCCCCCEEeCCCCcCcccCCCC
Q 037786 502 NQFTGE--IIH--SICDIIALDVLDLSNNRLSGTIPKC 535 (565)
Q Consensus 502 n~~~~~--~~~--~l~~~~~L~~L~l~~n~~~~~~p~~ 535 (565)
|.+... ..+ .....+.++.+.+.+|++....+..
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (414)
T KOG0531|consen 287 NKLALSEAISQEYITSAAPTLVTLTLELNPIRKISSLD 324 (414)
T ss_pred chhcchhhhhccccccccccccccccccCccccccccc
Confidence 665422 111 1455667777777777777544433
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.8e-09 Score=111.81 Aligned_cols=250 Identities=19% Similarity=0.201 Sum_probs=136.7
Q ss_pred CCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCc--cCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCee
Q 037786 59 SNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTR--FSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVL 136 (565)
Q Consensus 59 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L 136 (565)
...+...+.++ ..........++.|+.|-+.++. +.......|..++.|++|||++|.-....|..++++-+|++|
T Consensus 523 ~~~rr~s~~~~--~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNN--KIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEecc--chhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 44555555544 22333344444567777777774 443334446678888888888776666777888888888888
Q ss_pred eccCCcccccCCcCccCCCCCCEEEccCccccccCcC-CcCCCCCCEEeccCCcc--cccCCCCCcCCCCCCEEEccccc
Q 037786 137 SLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD-IMNLTRISRLDISNNQL--TGSIPSHGSGLQNLAVLRLYNNT 213 (565)
Q Consensus 137 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~L~~L~l~~~~ 213 (565)
+++++.+. .+|..++++..|.+|++..+......+. ...+++|++|.+..... +......+..+.+|+.+......
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence 88888777 6778888888888888877665444444 44477888877765431 11222233444445544443332
Q ss_pred ccCCCchhhcCCCCCC----EEEccCCcccccCCC-CCCCCCcEEEccCCccccCCchhh-----hc-CCCcCccccccc
Q 037786 214 LSGTIPSWLFTLPLLR----DIDLSDNQLTGHLDA-FPSKSLRKLYLTNNRLHGSIPSSI-----FE-LANLTYLSLASN 282 (565)
Q Consensus 214 l~~~~~~~l~~~~~L~----~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~-----~~-~~~L~~L~l~~n 282 (565)
. .....+....+|. .+.+.++........ ....+|+.|.+.+|.+......+. .. ++++..+.+.+|
T Consensus 680 ~--~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~ 757 (889)
T KOG4658|consen 680 V--LLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNC 757 (889)
T ss_pred h--HhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcc
Confidence 2 0111122222222 222222332222222 255677888887777653221111 11 334555555555
Q ss_pred cccCccChHhhhcCCCCCEEEccCCccccccCC
Q 037786 283 NFSGIVEPYMLAKLVNLAALELSHNSLSFGTTS 315 (565)
Q Consensus 283 ~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~ 315 (565)
...... ......++|+.|.+.+|......+.
T Consensus 758 ~~~r~l--~~~~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 758 HMLRDL--TWLLFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred cccccc--chhhccCcccEEEEecccccccCCC
Confidence 443332 2234457788888877765444333
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.8e-09 Score=108.22 Aligned_cols=255 Identities=21% Similarity=0.135 Sum_probs=175.4
Q ss_pred CCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCc-hhhccccceEe
Q 037786 272 ANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPS-FLRSLELAYLD 350 (565)
Q Consensus 272 ~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~L~~L~ 350 (565)
+..+.++...+.+..... . ...+..++.+.+..|.+.. ...-...+.+++.+++.+|.+..+.. .....+|++|+
T Consensus 49 ~~~~~~~~~~~~~~~~~~-~-~~~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ 124 (414)
T KOG0531|consen 49 SDLEEIDLIFNLDGSDED-L-VESLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLD 124 (414)
T ss_pred chhhhhcchhccccchhh-h-HHHhHhHHhhccchhhhhh--hhcccccccceeeeeccccchhhcccchhhhhcchhee
Confidence 345555555554432211 1 1455667777787777764 12213667889999999999988877 33444899999
Q ss_pred ccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCC-CCCCCCeEEcCCCcccccCC---CCCCCCcEEEccccccCc
Q 037786 351 LSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI-PWKNLKYLKLQSNLLQGPLP---VPPPRLQFLLASNNQFTG 426 (565)
Q Consensus 351 l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~l~~n~~~~~~~---~~~~~L~~L~l~~n~i~~ 426 (565)
+++|.|+...+.. .++.|+.|++++|.++.+... .+.+|+.+++++|++....+ ..+.+++.+.+.+|.+..
T Consensus 125 ls~N~I~~i~~l~----~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 125 LSFNKITKLEGLS----TLTLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIRE 200 (414)
T ss_pred ccccccccccchh----hccchhhheeccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhc
Confidence 9999988544433 345689999999999988886 57889999999998887666 568888888899988764
Q ss_pred cchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cccCCCc--ccEEECCCCccccc--CCCCCCCCcEeeccC
Q 037786 427 EIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQISWKN--LGYLDLRSNLLQGP--LLVPPSSLRVILILN 501 (565)
Q Consensus 427 ~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~--L~~L~ls~n~l~~~--~~~~~~~L~~L~l~~ 501 (565)
... +... ..+..+++..|.+..+ +...... |+.+++++|.+... ....+..+..|++.+
T Consensus 201 i~~--~~~~--------------~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~ 264 (414)
T KOG0531|consen 201 IEG--LDLL--------------KKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSS 264 (414)
T ss_pred ccc--hHHH--------------HHHHHhhcccccceeccCcccchhHHHHHHhcccCccccccccccccccccccchhh
Confidence 332 2222 4555668888888888 5444444 88999999988753 344788888999999
Q ss_pred ceeeeccchhhhcCCCCCEEeCCCCcCccc---CCCC-CCCCCCCcccccCCCCc
Q 037786 502 NQFTGEIIHSICDIIALDVLDLSNNRLSGT---IPKC-IGNFSPWCQTKWPSRWS 552 (565)
Q Consensus 502 n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~---~p~~-l~~l~~L~~l~~~~~~~ 552 (565)
|.+.. ...+...+.+.++....|++... .... .+....+..........
T Consensus 265 n~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (414)
T KOG0531|consen 265 NRISN--LEGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPI 317 (414)
T ss_pred ccccc--cccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcc
Confidence 88853 34567778888888888887622 2221 44566666665555433
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.7e-08 Score=70.67 Aligned_cols=59 Identities=34% Similarity=0.496 Sum_probs=35.3
Q ss_pred CCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCc
Q 037786 84 PLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKS 142 (565)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 142 (565)
+|++|++++|.++...+..|..+++|++|++++|.+....+.+|.++++|+.|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45566666666654444555666666666666666665555566666666666666654
|
... |
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.4e-10 Score=102.62 Aligned_cols=295 Identities=18% Similarity=0.137 Sum_probs=147.7
Q ss_pred CCCEEEccCCcccccCCC----CCCCCCcEEEccCCc-cccCCchh-hhcCCCcCcccccccc-ccCccChHhhhcCCCC
Q 037786 227 LLRDIDLSDNQLTGHLDA----FPSKSLRKLYLTNNR-LHGSIPSS-IFELANLTYLSLASNN-FSGIVEPYMLAKLVNL 299 (565)
Q Consensus 227 ~L~~L~l~~~~~~~~~~~----~~~~~L~~L~l~~~~-~~~~~~~~-~~~~~~L~~L~l~~n~-~~~~~~~~~l~~~~~L 299 (565)
.|+.|.+.++.-.+.... ..++++++|.+.+|. +++..-.. -..|++|+.+++..|. ++.....+.-.+|++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 566666666654432221 145556666665553 22211111 1235666666666643 3322222233455666
Q ss_pred CEEEccCC-ccccccCCcccCCCCCccEEEcCCCCCCCCCchhh----ccccceEeccCCcCcccCChhhhhhCCCCccE
Q 037786 300 AALELSHN-SLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLR----SLELAYLDLSENNIDGQIPNWMWEVGKDTLSF 374 (565)
Q Consensus 300 ~~L~l~~~-~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~----~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~ 374 (565)
++++++.| .+++.....+..++..++.+...+|.=........ +..+.++++.+|........+....++.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~---- 294 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH---- 294 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh----
Confidence 66666655 23333333333444445554444443221111111 0123334433332111222222222334
Q ss_pred EEcCCCccCCccCCCCCCCCeEEcCCCcccccC-----CCCCCCCcEEEccccc-cCccchhhhhhcCCCCCCccccccC
Q 037786 375 LDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPL-----PVPPPRLQFLLASNNQ-FTGEIIQSICSSSTLEIPSWISEIG 448 (565)
Q Consensus 375 L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~-----~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~~~~~~~~ 448 (565)
.|+.++.+++...+.. -...++|+.+-+++|+ +++-.++.+...
T Consensus 295 -----------------~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn------------- 344 (483)
T KOG4341|consen 295 -----------------ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRN------------- 344 (483)
T ss_pred -----------------HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcC-------------
Confidence 4445554444322111 1125666666666663 443333433321
Q ss_pred CCCCcEEeCcCCCCCCC-----cccCCCcccEEECCCCcc-ccc-------CCCCCCCCcEeeccCcee-eeccchhhhc
Q 037786 449 KDSLSYLNLSHNFITKM-----KQISWKNLGYLDLRSNLL-QGP-------LLVPPSSLRVILILNNQF-TGEIIHSICD 514 (565)
Q Consensus 449 ~~~L~~L~l~~n~l~~~-----~~~~~~~L~~L~ls~n~l-~~~-------~~~~~~~L~~L~l~~n~~-~~~~~~~l~~ 514 (565)
++.|+.+++..+....- +...|+.|+++.+|+|.+ ++. .......|+.+-+++++. ++...+.+..
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~ 424 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI 424 (483)
T ss_pred ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh
Confidence 26677777766643322 226788888888888864 332 111677888888888885 4455677788
Q ss_pred CCCCCEEeCCCCcCccc--CCCCCCCCCCCcccccCCCCcccc
Q 037786 515 IIALDVLDLSNNRLSGT--IPKCIGNFSPWCQTKWPSRWSATT 555 (565)
Q Consensus 515 ~~~L~~L~l~~n~~~~~--~p~~l~~l~~L~~l~~~~~~~~~~ 555 (565)
+++|+.+++.+|.-... +-..-..++++++.....--.+++
T Consensus 425 c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~a~~t~p~ 467 (483)
T KOG4341|consen 425 CRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYFAPVTPPG 467 (483)
T ss_pred CcccceeeeechhhhhhhhhHHHHhhCccceehhhccCCCCcc
Confidence 89999999999885532 222234788888877766544443
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.5e-10 Score=111.63 Aligned_cols=125 Identities=26% Similarity=0.246 Sum_probs=85.5
Q ss_pred CCCCCCeEEcCCCcccccCC--CCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCc
Q 037786 389 PWKNLKYLKLQSNLLQGPLP--VPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMK 466 (565)
Q Consensus 389 ~~~~L~~L~l~~n~~~~~~~--~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 466 (565)
.|-.|...+.++|++..... ..++.++.|+|++|++++. +.+.-+ +.|++|||++|.+..+|
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l--------------~~LkhLDlsyN~L~~vp 225 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV--DNLRRL--------------PKLKHLDLSYNCLRHVP 225 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhc--------------ccccccccccchhcccc
Confidence 34456666666666653222 2367778888888887742 255555 88888888888888886
Q ss_pred c---cCCCcccEEECCCCcccccCCC-CCCCCcEeeccCceeeecc-chhhhcCCCCCEEeCCCCcCcc
Q 037786 467 Q---ISWKNLGYLDLRSNLLQGPLLV-PPSSLRVILILNNQFTGEI-IHSICDIIALDVLDLSNNRLSG 530 (565)
Q Consensus 467 ~---~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~n~~~~ 530 (565)
. .+|. |..|++++|.++..--. .+.+|+-||+++|-+.+-. ..-+..+.+|.+|.|.|||+-|
T Consensus 226 ~l~~~gc~-L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 226 QLSMVGCK-LQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred ccchhhhh-heeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 4 4554 88888888887653222 7788888888888875442 2346777888888888888753
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.6e-08 Score=69.69 Aligned_cols=61 Identities=31% Similarity=0.455 Sum_probs=48.0
Q ss_pred CCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccc
Q 037786 107 RHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSF 167 (565)
Q Consensus 107 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 167 (565)
|+|++|++++|.+....+..|.++++|++|++++|.+....+.+|.++++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4678888888888777777788888888888888888776677788888888888887764
|
... |
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.64 E-value=8.2e-09 Score=92.08 Aligned_cols=204 Identities=19% Similarity=0.157 Sum_probs=108.7
Q ss_pred CCCEEEcccccCcccC-chhc-cCCCCCCeeeccCCccc--ccCCcCccCCCCCCEEEccCccccccCcCC-cCCCCCCE
Q 037786 108 HLRELHLSQCNFYGFL-PASL-GNVTQLAVLSLSFKSFS--GHIPPSLSNLHQLTDVDLGSNSFDGQFPDI-MNLTRISR 182 (565)
Q Consensus 108 ~L~~L~L~~~~~~~~~-~~~~-~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~ 182 (565)
.++.+.+.++.+.... ...| ...+.++.+|+.+|.++ ..+...+.++|.|+.|+++.|.+......+ ....+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 3444555555443221 1122 23566677777777665 233344556777777777777665444433 34556666
Q ss_pred EeccCCcccc-cCCCCCcCCCCCCEEEcccccccCC--Cchhhc-CCCCCCEEEccCCcccccCCCC----CCCCCcEEE
Q 037786 183 LDISNNQLTG-SIPSHGSGLQNLAVLRLYNNTLSGT--IPSWLF-TLPLLRDIDLSDNQLTGHLDAF----PSKSLRKLY 254 (565)
Q Consensus 183 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~l~-~~~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~ 254 (565)
|.+.|..+.- .....+..+|.++.|.++.|.+... ...... ..+.++++++..|......... .++++..+-
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~ 205 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF 205 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence 6666654331 2233445566667776666643211 011111 1234555555555443221111 345566666
Q ss_pred ccCCccccCCc-hhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCcccc
Q 037786 255 LTNNRLHGSIP-SSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSF 311 (565)
Q Consensus 255 l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~ 311 (565)
+..|.+.+... ......+.+..|+++.+.+......+.+..++.|..|.++++++.+
T Consensus 206 v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 206 VCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred eecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 66665543221 2333455666777777777666666677777777777777777654
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.5e-07 Score=98.88 Aligned_cols=107 Identities=31% Similarity=0.549 Sum_probs=80.9
Q ss_pred CCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcC-CcCCCCCCEEeccC
Q 037786 109 LRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD-IMNLTRISRLDISN 187 (565)
Q Consensus 109 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~ 187 (565)
++.|+|++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+..+. ++.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 67778888887777777788888888888888888777777788888888888888887765555 77788888888888
Q ss_pred CcccccCCCCCcCC-CCCCEEEccccccc
Q 037786 188 NQLTGSIPSHGSGL-QNLAVLRLYNNTLS 215 (565)
Q Consensus 188 ~~~~~~~~~~~~~~-~~L~~L~l~~~~l~ 215 (565)
|.+.+..|..+... .++..+++.+|...
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccc
Confidence 88877777666543 35667777777543
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.47 E-value=7.7e-09 Score=92.31 Aligned_cols=177 Identities=19% Similarity=0.135 Sum_probs=94.3
Q ss_pred CCcEEEcCCCcCCCCCc-hhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCC--CCCCCCcE
Q 037786 11 KLQLLFLDYVDMSTVVP-GTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRS--NWTSPLRC 87 (565)
Q Consensus 11 ~L~~L~l~~~~~~~~~~-~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~--~~~~~L~~ 87 (565)
.|+.+|+|...++.-.. .-+++| .+|+.|.+.+.++.+.+...+++..+|+.|+++.+..+....... ..++.|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C-~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQC-SKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHH-HhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 46667777665553222 223444 667777777776666666666667777777777664433322111 12266677
Q ss_pred EEccCCccCccCC-ccccC-CCCCCEEEccccc--CcccCch-hccCCCCCCeeeccCCc-ccccCCcCccCCCCCCEEE
Q 037786 88 LDVSGTRFSGQLP-DSICN-LRHLRELHLSQCN--FYGFLPA-SLGNVTQLAVLSLSFKS-FSGHIPPSLSNLHQLTDVD 161 (565)
Q Consensus 88 L~l~~~~~~~~~~-~~~~~-l~~L~~L~L~~~~--~~~~~~~-~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~ 161 (565)
|+++.|......- ..+.+ -++|+.|+++++. +...... -...+++|.+||+++|. ++.....+|..++.|+++.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 7777765442211 11111 1456666776654 1111111 22556777777777663 2222233455667777777
Q ss_pred ccCcccc--ccCcCCcCCCCCCEEeccCC
Q 037786 162 LGSNSFD--GQFPDIMNLTRISRLDISNN 188 (565)
Q Consensus 162 l~~~~~~--~~~~~~~~~~~L~~L~l~~~ 188 (565)
++.|... +..-.+...+.|.+|++.|+
T Consensus 345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 7766532 11112666777777777665
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.5e-08 Score=94.83 Aligned_cols=271 Identities=21% Similarity=0.158 Sum_probs=166.2
Q ss_pred CCCCEEEcccccccCC--CchhhcCCCCCCEEEccCCcccccCCCC----CCCCCcEEEccCC-ccccCCch-hhhcCCC
Q 037786 202 QNLAVLRLYNNTLSGT--IPSWLFTLPLLRDIDLSDNQLTGHLDAF----PSKSLRKLYLTNN-RLHGSIPS-SIFELAN 273 (565)
Q Consensus 202 ~~L~~L~l~~~~l~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~~-~~~~~~~~-~~~~~~~ 273 (565)
..|+.|.++++.-... .......+++++.|.+.+|...+..... .++.++.+++..| .+++.... ....|++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 3578888988864322 2334567999999999999754322211 7789999999986 45544333 3346899
Q ss_pred cCccccccccc-cCccChHhhhcCCCCCEEEccCCc-cccccCCcccCCCCCccEEEcCCCCC-CCCCchhhc---cccc
Q 037786 274 LTYLSLASNNF-SGIVEPYMLAKLVNLAALELSHNS-LSFGTTSKVNSSFPQIFILSLSACNI-SAFPSFLRS---LELA 347 (565)
Q Consensus 274 L~~L~l~~n~~-~~~~~~~~l~~~~~L~~L~l~~~~-i~~~~~~~~~~~~~~L~~L~l~~~~l-~~l~~~~~~---~~L~ 347 (565)
|++++++.|.. .+........++..++++...+|. ...+........++.+.++++..|.. +...-+... ..|+
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq 297 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ 297 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence 99999999874 332222345677778888777763 22233333345666778888878753 322222222 2789
Q ss_pred eEeccCCcCcccCChhhhhhCCCCccEEEcCCCc-cCCccC----CCCCCCCeEEcCCCccccc-----CCCCCCCCcEE
Q 037786 348 YLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNF-ITEMKQ----IPWKNLKYLKLQSNLLQGP-----LPVPPPRLQFL 417 (565)
Q Consensus 348 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~~~----~~~~~L~~L~l~~n~~~~~-----~~~~~~~L~~L 417 (565)
.++.+++...+..+.+.....+++|+.+-++.|+ +++... -.++.|+.+++..+..... ....++.|+.+
T Consensus 298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~l 377 (483)
T KOG4341|consen 298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVL 377 (483)
T ss_pred hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccC
Confidence 9999987443333333322367899999999985 554444 2678888888888755432 22347888888
Q ss_pred Eccccc-cCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cc---cCCCcccEEECCCCc
Q 037786 418 LASNNQ-FTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQ---ISWKNLGYLDLRSNL 482 (565)
Q Consensus 418 ~l~~n~-i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~---~~~~~L~~L~ls~n~ 482 (565)
.+++|. |++.....+.... =+...|..+.+++++...- .. ..+++|+.+++-++.
T Consensus 378 slshce~itD~gi~~l~~~~----------c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 378 SLSHCELITDEGIRHLSSSS----------CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred Chhhhhhhhhhhhhhhhhcc----------ccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 888884 4433222222110 0015666777776655543 11 555566666555554
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.41 E-value=7e-09 Score=92.55 Aligned_cols=86 Identities=17% Similarity=0.166 Sum_probs=52.4
Q ss_pred CCCCEEEccCccccccCc--CCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEccccc-ccCC-CchhhcCCCCCCE
Q 037786 155 HQLTDVDLGSNSFDGQFP--DIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNT-LSGT-IPSWLFTLPLLRD 230 (565)
Q Consensus 155 ~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~-~~~~l~~~~~L~~ 230 (565)
..++.++++...++.... .+..|.+|+.|.+.|+++.+.+...++....|+.++++.+. ++.. ....+..|+.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 356777777666542211 15567777777777777665555556666777777777664 2221 2234566777777
Q ss_pred EEccCCcccc
Q 037786 231 IDLSDNQLTG 240 (565)
Q Consensus 231 L~l~~~~~~~ 240 (565)
|++++|.+..
T Consensus 265 LNlsWc~l~~ 274 (419)
T KOG2120|consen 265 LNLSWCFLFT 274 (419)
T ss_pred cCchHhhccc
Confidence 7777776553
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.6e-08 Score=87.77 Aligned_cols=162 Identities=20% Similarity=0.206 Sum_probs=88.4
Q ss_pred CcCCCCCCEEeccCCcccccCCC----CCcCCCCCCEEEcccccccCCCch-------------hhcCCCCCCEEEccCC
Q 037786 174 IMNLTRISRLDISNNQLTGSIPS----HGSGLQNLAVLRLYNNTLSGTIPS-------------WLFTLPLLRDIDLSDN 236 (565)
Q Consensus 174 ~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~l~~~~~~-------------~l~~~~~L~~L~l~~~ 236 (565)
+..|+.|+.+++++|.+....|. .++.-..|.+|.+++|.+....-. ..+.-|.|+++....|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 34455555555555544422221 123344555555555544321111 1223466777777777
Q ss_pred cccccCCCC------CCCCCcEEEccCCccccCC-----chhhhcCCCcCccccccccccCccC---hHhhhcCCCCCEE
Q 037786 237 QLTGHLDAF------PSKSLRKLYLTNNRLHGSI-----PSSIFELANLTYLSLASNNFSGIVE---PYMLAKLVNLAAL 302 (565)
Q Consensus 237 ~~~~~~~~~------~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~n~~~~~~~---~~~l~~~~~L~~L 302 (565)
++....... ....++++.+..|.|.... ...+.++++|+.|++..|.++.... ...+..++.|++|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 665322111 2246777777777665331 2234567888888888887764322 2345666778888
Q ss_pred EccCCccccccCCccc-----CCCCCccEEEcCCCCCC
Q 037786 303 ELSHNSLSFGTTSKVN-----SSFPQIFILSLSACNIS 335 (565)
Q Consensus 303 ~l~~~~i~~~~~~~~~-----~~~~~L~~L~l~~~~l~ 335 (565)
.+.+|-++..+...++ ...|+|..|...||...
T Consensus 248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred cccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 8888877655554432 23456677777777543
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.1e-08 Score=87.13 Aligned_cols=208 Identities=21% Similarity=0.157 Sum_probs=130.2
Q ss_pred cCCCCCCeeeccCCcccccCC-cCc-cCCCCCCEEEccCccccccCc---CCcCCCCCCEEeccCCcccccCCCCCcCCC
Q 037786 128 GNVTQLAVLSLSFKSFSGHIP-PSL-SNLHQLTDVDLGSNSFDGQFP---DIMNLTRISRLDISNNQLTGSIPSHGSGLQ 202 (565)
Q Consensus 128 ~~l~~L~~L~l~~~~~~~~~~-~~~-~~l~~L~~L~l~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 202 (565)
....-++.+.+.++.|..+-. ..| ..++.++.+++.+|.++.... .+.++|.|+.|+++.|++...+........
T Consensus 42 ~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~ 121 (418)
T KOG2982|consen 42 SSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLK 121 (418)
T ss_pred ccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccccc
Confidence 334456677777776652211 112 356889999999999875433 277899999999999998855544434667
Q ss_pred CCCEEEcccccccCC-CchhhcCCCCCCEEEccCCccccc-----CCCCCCCCCcEEEccCCccccC--CchhhhcCCCc
Q 037786 203 NLAVLRLYNNTLSGT-IPSWLFTLPLLRDIDLSDNQLTGH-----LDAFPSKSLRKLYLTNNRLHGS--IPSSIFELANL 274 (565)
Q Consensus 203 ~L~~L~l~~~~l~~~-~~~~l~~~~~L~~L~l~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L 274 (565)
+|+.|-+.+..+.-. ....+..+|.+++|+++.|.+... ..+...+.++++....|..... ......-+|++
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv 201 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNV 201 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccc
Confidence 899999998877533 334567789999999999855421 1112334556666655543311 11111224666
Q ss_pred CccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCC
Q 037786 275 TYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNIS 335 (565)
Q Consensus 275 ~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~ 335 (565)
..+.+..|++...-....+..++.+..|+++.+.|......+...+++++..|.+.++.+.
T Consensus 202 ~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 202 NSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 6666666666555444555566666666776666655444444466666666666666654
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.2e-08 Score=99.95 Aligned_cols=126 Identities=25% Similarity=0.208 Sum_probs=57.8
Q ss_pred CcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEc
Q 037786 250 LRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSL 329 (565)
Q Consensus 250 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l 329 (565)
|...++++|.++ .....++-++.++.|++++|++... +.+..++.|+.|||+.|.+..... +...-..|..|++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~~vp~--l~~~gc~L~~L~l 239 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLRHVPQ--LSMVGCKLQLLNL 239 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchhccccc--cchhhhhheeeee
Confidence 334444445444 3444455555555555555555432 245555555555555555432211 1111122555555
Q ss_pred CCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCcc
Q 037786 330 SACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFI 382 (565)
Q Consensus 330 ~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l 382 (565)
++|.++++.......+|+.||+++|-+. ......+...+..|+.|+|.+|++
T Consensus 240 rnN~l~tL~gie~LksL~~LDlsyNll~-~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 240 RNNALTTLRGIENLKSLYGLDLSYNLLS-EHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccHHHhhhhHHhhhhhhccchhHhhhh-cchhhhHHHHHHHHHHHhhcCCcc
Confidence 5555554444333335555555555544 222221111224455555555544
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.4e-08 Score=86.40 Aligned_cols=88 Identities=23% Similarity=0.133 Sum_probs=44.0
Q ss_pred CCCCCCEEEcccccccCCC----chhhcCCCCCCEEEccCCcccccCC--------CCCCCCCcEEEccCCccccC----
Q 037786 200 GLQNLAVLRLYNNTLSGTI----PSWLFTLPLLRDIDLSDNQLTGHLD--------AFPSKSLRKLYLTNNRLHGS---- 263 (565)
Q Consensus 200 ~~~~L~~L~l~~~~l~~~~----~~~l~~~~~L~~L~l~~~~~~~~~~--------~~~~~~L~~L~l~~~~~~~~---- 263 (565)
.+++|+.||+++|.++... ...+...+.|+.|.+..|.+..... ....++|+.|...+|...+.
T Consensus 212 y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~ 291 (388)
T COG5238 212 YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILD 291 (388)
T ss_pred HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeee
Confidence 3455566666655554221 1223334455666666665542111 11345555565555544321
Q ss_pred --Cchhh-hcCCCcCccccccccccCc
Q 037786 264 --IPSSI-FELANLTYLSLASNNFSGI 287 (565)
Q Consensus 264 --~~~~~-~~~~~L~~L~l~~n~~~~~ 287 (565)
.+... ..+|-|..+.+.+|.+...
T Consensus 292 ~~l~~~e~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 292 ISLNEFEQDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred echhhhhhcccHHHHHHHHccCcchhH
Confidence 11111 1367788888888888644
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=5e-06 Score=80.22 Aligned_cols=32 Identities=19% Similarity=0.075 Sum_probs=16.5
Q ss_pred CCCcEEeCcCCCCCCCcccCCCcccEEECCCC
Q 037786 450 DSLSYLNLSHNFITKMKQISWKNLGYLDLRSN 481 (565)
Q Consensus 450 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~ls~n 481 (565)
++|++|++++|.....|..-.++|+.|+++.+
T Consensus 156 sSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNIILPEKLPESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcccCcccccccCcEEEeccc
Confidence 45555666555544444333345555555554
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.5e-06 Score=80.52 Aligned_cols=131 Identities=15% Similarity=0.105 Sum_probs=65.1
Q ss_pred ccceEeccCCcCcccCChhhhhhCCCCccEEEcCCC-ccCCccCCCCCCCCeEEcCCCcccccCCCCCCCCcEEEccccc
Q 037786 345 ELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHN-FITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQ 423 (565)
Q Consensus 345 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n-~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~ 423 (565)
.++.|++++|.++ .+|. -+++|+.|.+++| .++.++....++|++|++++|... +..+++|+.|+++++.
T Consensus 53 ~l~~L~Is~c~L~-sLP~-----LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L---~sLP~sLe~L~L~~n~ 123 (426)
T PRK15386 53 ASGRLYIKDCDIE-SLPV-----LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEI---SGLPESVRSLEIKGSA 123 (426)
T ss_pred CCCEEEeCCCCCc-ccCC-----CCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccc---cccccccceEEeCCCC
Confidence 5667777776665 4551 2345666766664 344443333346666666666321 2234556666665544
Q ss_pred cCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCC-CCCC--cccCCCcccEEECCCCcccccCCCCCCCCcEeecc
Q 037786 424 FTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNF-ITKM--KQISWKNLGYLDLRSNLLQGPLLVPPSSLRVILIL 500 (565)
Q Consensus 424 i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~--~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~ 500 (565)
... + ..+| ++|++|.+.++. .... |..-.++|+.|++++|.........+.+|+.|+++
T Consensus 124 ~~~-----L-----~~LP--------ssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls 185 (426)
T PRK15386 124 TDS-----I-----KNVP--------NGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITLH 185 (426)
T ss_pred Ccc-----c-----ccCc--------chHhheeccccccccccccccccCCcccEEEecCCCcccCcccccccCcEEEec
Confidence 321 0 1122 456666654322 1111 11122466666666666443111245666666666
Q ss_pred Cc
Q 037786 501 NN 502 (565)
Q Consensus 501 ~n 502 (565)
.+
T Consensus 186 ~n 187 (426)
T PRK15386 186 IE 187 (426)
T ss_pred cc
Confidence 55
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.07 E-value=9.6e-06 Score=68.87 Aligned_cols=97 Identities=26% Similarity=0.191 Sum_probs=51.4
Q ss_pred CCCCeEEcCCCccccc-CCCCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC----
Q 037786 391 KNLKYLKLQSNLLQGP-LPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM---- 465 (565)
Q Consensus 391 ~~L~~L~l~~n~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~---- 465 (565)
.+...+|+++|.+... ....++.|.+|.+++|.|+...+.--... |+|+.|.+.+|.|..+
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~--------------p~l~~L~LtnNsi~~l~dl~ 107 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFL--------------PNLKTLILTNNSIQELGDLD 107 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhc--------------cccceEEecCcchhhhhhcc
Confidence 3455556666655432 22335556666666666654444433333 5666666666655544
Q ss_pred cccCCCcccEEECCCCcccccCCC------CCCCCcEeeccC
Q 037786 466 KQISWKNLGYLDLRSNLLQGPLLV------PPSSLRVILILN 501 (565)
Q Consensus 466 ~~~~~~~L~~L~ls~n~l~~~~~~------~~~~L~~L~l~~ 501 (565)
|...||.|+.|.+=+|......-. .+++|+.||+++
T Consensus 108 pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 108 PLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred hhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 225566666666666665432211 556666666655
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.03 E-value=5.8e-06 Score=70.14 Aligned_cols=101 Identities=20% Similarity=0.217 Sum_probs=68.5
Q ss_pred CCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cc--cCCCcccEEECCCCcccc--
Q 037786 411 PPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQ--ISWKNLGYLDLRSNLLQG-- 485 (565)
Q Consensus 411 ~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~ls~n~l~~-- 485 (565)
......+|+++|++.. ...+... +.|.+|.+.+|.|+.+ |. ..+|+|+.|.+.+|.|..
T Consensus 41 ~d~~d~iDLtdNdl~~--l~~lp~l--------------~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~ 104 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK--LDNLPHL--------------PRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELG 104 (233)
T ss_pred ccccceecccccchhh--cccCCCc--------------cccceEEecCCcceeeccchhhhccccceEEecCcchhhhh
Confidence 4566678888887752 2233333 7888888888888888 55 667788888888887753
Q ss_pred cCCC--CCCCCcEeeccCceeeecc---chhhhcCCCCCEEeCCCCc
Q 037786 486 PLLV--PPSSLRVILILNNQFTGEI---IHSICDIIALDVLDLSNNR 527 (565)
Q Consensus 486 ~~~~--~~~~L~~L~l~~n~~~~~~---~~~l~~~~~L~~L~l~~n~ 527 (565)
.+.. .++.|++|.+-+|+++..- ...+..+|+|+.||+++=.
T Consensus 105 dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 105 DLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred hcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 2222 7778888888888776542 2345677778887777644
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.96 E-value=5.9e-06 Score=52.69 Aligned_cols=37 Identities=32% Similarity=0.469 Sum_probs=30.2
Q ss_pred CCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCc
Q 037786 492 SSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLS 529 (565)
Q Consensus 492 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 529 (565)
++|++|++++|.|++ ++..++++++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 478999999999985 4556899999999999999987
|
... |
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=2e-06 Score=68.11 Aligned_cols=78 Identities=24% Similarity=0.290 Sum_probs=34.3
Q ss_pred CCCcEEeCcCCCCCCCcc---cCCCcccEEECCCCcccccCCC---CCCCCcEeeccCceeeeccchhhhcCCCCCEEeC
Q 037786 450 DSLSYLNLSHNFITKMKQ---ISWKNLGYLDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEIIHSICDIIALDVLDL 523 (565)
Q Consensus 450 ~~L~~L~l~~n~l~~~~~---~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l 523 (565)
..|+..+|++|.+.++|. ..++.++.+++++|.+++ +|. ..+.|+.|+++.|++. ..|+.+..+.++-.|+.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 344444555555544432 334444444444444444 222 4444444444444443 23333444444444444
Q ss_pred CCCcCc
Q 037786 524 SNNRLS 529 (565)
Q Consensus 524 ~~n~~~ 529 (565)
.+|.+.
T Consensus 131 ~~na~~ 136 (177)
T KOG4579|consen 131 PENARA 136 (177)
T ss_pred CCCccc
Confidence 444443
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.73 E-value=7.4e-05 Score=61.61 Aligned_cols=124 Identities=15% Similarity=0.161 Sum_probs=53.2
Q ss_pred HHHhhCCCCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCC
Q 037786 3 EALVQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWT 82 (565)
Q Consensus 3 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~ 82 (565)
+.+|.++++|+.+.+.. .+..+...+|..+ .+++.+.+.++ +......+|.+++.++.+.+..+ ...-....+...
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~-~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~ 80 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNC-TSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN-LKSIGDNAFSNC 80 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT--TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST-T-EE-TTTTTT-
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhcccc-ccccccccccc-ccccceeeeeccccccccccccc-cccccccccccc
Confidence 46778888888888774 4666666777776 67888888765 55556667777777887777542 111111222223
Q ss_pred CCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCC
Q 037786 83 SPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQL 133 (565)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L 133 (565)
+.++.+++..+ +.......|.++ +|+.+.+.. .+......+|.++++|
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 55555555433 222223344444 555555443 2233333444444443
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=1e-05 Score=85.03 Aligned_cols=144 Identities=22% Similarity=0.266 Sum_probs=92.5
Q ss_pred CCCCeEEcCCCccccc-----CCCCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC
Q 037786 391 KNLKYLKLQSNLLQGP-----LPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM 465 (565)
Q Consensus 391 ~~L~~L~l~~n~~~~~-----~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 465 (565)
.+|++||+++...... ....+|+|++|.+++-.+....+..+|.. .|+|..||||++.++.+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~s-------------FpNL~sLDIS~TnI~nl 188 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCAS-------------FPNLRSLDISGTNISNL 188 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhc-------------cCccceeecCCCCccCc
Confidence 5677777777543321 12238888888888887776655555533 28888888888888888
Q ss_pred -cccCCCcccEEECCCCcccc--cCCC--CCCCCcEeeccCceeeec------cchhhhcCCCCCEEeCCCCcCcccCCC
Q 037786 466 -KQISWKNLGYLDLRSNLLQG--PLLV--PPSSLRVILILNNQFTGE------IIHSICDIIALDVLDLSNNRLSGTIPK 534 (565)
Q Consensus 466 -~~~~~~~L~~L~ls~n~l~~--~~~~--~~~~L~~L~l~~n~~~~~------~~~~l~~~~~L~~L~l~~n~~~~~~p~ 534 (565)
.-..+.+|+.|.+.+=.+.. .+-. .+++|+.||+|....... -.++-..+|.|+.||.|++.+.+.+=+
T Consensus 189 ~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le 268 (699)
T KOG3665|consen 189 SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILE 268 (699)
T ss_pred HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHH
Confidence 44777788877666655532 1111 788888888888664322 123445678888888888877754333
Q ss_pred C-CCCCCCCccccc
Q 037786 535 C-IGNFSPWCQTKW 547 (565)
Q Consensus 535 ~-l~~l~~L~~l~~ 547 (565)
. +...++|+.+..
T Consensus 269 ~ll~sH~~L~~i~~ 282 (699)
T KOG3665|consen 269 ELLNSHPNLQQIAA 282 (699)
T ss_pred HHHHhCccHhhhhh
Confidence 3 456666666553
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=1.9e-06 Score=68.16 Aligned_cols=82 Identities=23% Similarity=0.209 Sum_probs=36.1
Q ss_pred CCCcEEeCcCCCCCCCcc--cCCCcccEEECCCCcccccCCC--CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCC
Q 037786 450 DSLSYLNLSHNFITKMKQ--ISWKNLGYLDLRSNLLQGPLLV--PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSN 525 (565)
Q Consensus 450 ~~L~~L~l~~n~l~~~~~--~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 525 (565)
+..+.|++++|+|+++|. ..++.|+.++++.|++....-. .+.++-.||..+|.... ++..+-.-+..-..++++
T Consensus 77 ~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~e-id~dl~~s~~~al~~lgn 155 (177)
T KOG4579|consen 77 PTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAE-IDVDLFYSSLPALIKLGN 155 (177)
T ss_pred chhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCcccc-CcHHHhccccHHHHHhcC
Confidence 344455555555555543 4445555555555554431100 34445555555555442 222222222233334455
Q ss_pred CcCcccC
Q 037786 526 NRLSGTI 532 (565)
Q Consensus 526 n~~~~~~ 532 (565)
++..+.-
T Consensus 156 epl~~~~ 162 (177)
T KOG4579|consen 156 EPLGDET 162 (177)
T ss_pred CcccccC
Confidence 5555443
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.68 E-value=4.7e-05 Score=48.56 Aligned_cols=37 Identities=32% Similarity=0.487 Sum_probs=22.5
Q ss_pred CCcEEEccCCccCccCCccccCCCCCCEEEcccccCcc
Q 037786 84 PLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYG 121 (565)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~ 121 (565)
+|++|++++|+++ .+|..+.++++|++|++++|.+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 5666666666666 344456667777777777666653
|
... |
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0003 Score=57.90 Aligned_cols=124 Identities=15% Similarity=0.184 Sum_probs=61.3
Q ss_pred CccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcC-CcCCC
Q 037786 100 PDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD-IMNLT 178 (565)
Q Consensus 100 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~ 178 (565)
...|.++.+|+.+.+.. .+......+|.++++|+.+.+..+ +......+|.+++.++.+.+.. .+...... +..++
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 34567777788887764 455566677777777888887764 5544555677777788888765 33323333 66677
Q ss_pred CCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCC
Q 037786 179 RISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLR 229 (565)
Q Consensus 179 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~ 229 (565)
+|+.+.+..+ +.......|..+ .++.+.+.. .+.......|..+++|+
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 8888887654 444555667776 777777765 33334455666666653
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00011 Score=77.39 Aligned_cols=86 Identities=22% Similarity=0.271 Sum_probs=46.8
Q ss_pred CCcCccccccccccCcc-ChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCchhhccccceEe
Q 037786 272 ANLTYLSLASNNFSGIV-EPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLD 350 (565)
Q Consensus 272 ~~L~~L~l~~n~~~~~~-~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~ 350 (565)
.+|+.|+++|....... +...-..+|+|+.|.+++-.+.......++.++|+|..||+++++++.+...-...+|+.|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 45666666664432211 11222345777777777666554444455566777777777777766553222222555555
Q ss_pred ccCCcCc
Q 037786 351 LSENNID 357 (565)
Q Consensus 351 l~~n~l~ 357 (565)
+.+=.+.
T Consensus 202 mrnLe~e 208 (699)
T KOG3665|consen 202 MRNLEFE 208 (699)
T ss_pred ccCCCCC
Confidence 5554444
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.35 E-value=9e-05 Score=65.96 Aligned_cols=100 Identities=24% Similarity=0.331 Sum_probs=70.9
Q ss_pred CCCCCccEEEcCCCCCCCCCchhhccccceEeccCC--cCcccCChhhhhhCCCCccEEEcCCCccCCccCC----CCCC
Q 037786 319 SSFPQIFILSLSACNISAFPSFLRSLELAYLDLSEN--NIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI----PWKN 392 (565)
Q Consensus 319 ~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n--~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~----~~~~ 392 (565)
..+..++.+++.++.++++..+...++|++|.++.| .+...++.... .+|+|+.+++++|++..+... .+++
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e--~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAE--KAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhh--hCCceeEEeecCCccccccccchhhhhcc
Confidence 455677777888888887776666668999999999 55555544443 459999999999988865442 6678
Q ss_pred CCeEEcCCCcccccC------CCCCCCCcEEEcc
Q 037786 393 LKYLKLQSNLLQGPL------PVPPPRLQFLLAS 420 (565)
Q Consensus 393 L~~L~l~~n~~~~~~------~~~~~~L~~L~l~ 420 (565)
|+.|++.+|+.+... ...+|+|++||-.
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 889999888776521 1126777766543
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00017 Score=74.64 Aligned_cols=231 Identities=25% Similarity=0.147 Sum_probs=109.0
Q ss_pred CCCcCccccccccccCcc-ChHhhhcCCCCCEEEccCC-c-ccccc--CCcccCCCCCccEEEcCCCC-CCC--CCchhh
Q 037786 271 LANLTYLSLASNNFSGIV-EPYMLAKLVNLAALELSHN-S-LSFGT--TSKVNSSFPQIFILSLSACN-ISA--FPSFLR 342 (565)
Q Consensus 271 ~~~L~~L~l~~n~~~~~~-~~~~l~~~~~L~~L~l~~~-~-i~~~~--~~~~~~~~~~L~~L~l~~~~-l~~--l~~~~~ 342 (565)
++.|+.+.+.++.-.... .......++.|++|+++++ . +.... .......+++++.++++++. ++. +.....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 455555555555322221 1123445556666665542 1 11000 11122344555566666555 331 112222
Q ss_pred -ccccceEeccCCc-CcccCChhhhhhCCCCccEEEcCCCccCCccC-----CCCCCCCeEEcCCCcccccCCCCCCCCc
Q 037786 343 -SLELAYLDLSENN-IDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQ-----IPWKNLKYLKLQSNLLQGPLPVPPPRLQ 415 (565)
Q Consensus 343 -~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-----~~~~~L~~L~l~~n~~~~~~~~~~~~L~ 415 (565)
+++|+.|.+.+|. +++.....+.. .++.|+.|++++|....... ..+++++.+.+..... ++.++
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~-~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~-------c~~l~ 338 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAE-RCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG-------CPSLT 338 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHH-hcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC-------CccHH
Confidence 2256666655554 44433333333 45666666666654431111 1345555544333221 34455
Q ss_pred EEEccccccCc---cchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCc-c---cCCCcccEEECCCCcccccCC
Q 037786 416 FLLASNNQFTG---EIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMK-Q---ISWKNLGYLDLRSNLLQGPLL 488 (565)
Q Consensus 416 ~L~l~~n~i~~---~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~---~~~~~L~~L~ls~n~l~~~~~ 488 (565)
.+.+.++.-.. ...-....+ ++++.+.+.++...+.. . .+|+.|+ ..+.....
T Consensus 339 ~~~l~~~~~~~~d~~~~~~~~~~--------------~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~~~----- 398 (482)
T KOG1947|consen 339 DLSLSGLLTLTSDDLAELILRSC--------------PKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELRLC----- 398 (482)
T ss_pred HHHHHHhhccCchhHhHHHHhcC--------------CCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHHhc-----
Confidence 55555543321 122223344 78888888877644432 1 5555552 22211111
Q ss_pred CCCCCCcEeeccCcee-eeccchhhhc-CCCCCEEeCCCCcCcc
Q 037786 489 VPPSSLRVILILNNQF-TGEIIHSICD-IIALDVLDLSNNRLSG 530 (565)
Q Consensus 489 ~~~~~L~~L~l~~n~~-~~~~~~~l~~-~~~L~~L~l~~n~~~~ 530 (565)
....++.|+++.+.. +......... +..++.+++++++...
T Consensus 399 -~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~ 441 (482)
T KOG1947|consen 399 -RSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT 441 (482)
T ss_pred -cCCccceEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence 122278888888774 4333344433 7778888888888663
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00012 Score=75.84 Aligned_cols=35 Identities=23% Similarity=0.243 Sum_probs=17.8
Q ss_pred CCCCCEEEcccccccCC--CchhhcCCCCCCEEEccC
Q 037786 201 LQNLAVLRLYNNTLSGT--IPSWLFTLPLLRDIDLSD 235 (565)
Q Consensus 201 ~~~L~~L~l~~~~l~~~--~~~~l~~~~~L~~L~l~~ 235 (565)
++.|+.+.+.++.-... .......++.|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 45566666655532212 223344566666666665
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.01 E-value=4.3e-05 Score=68.24 Aligned_cols=93 Identities=22% Similarity=0.113 Sum_probs=60.7
Q ss_pred CCCCCeEEcCCCcccccCCCC-CCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcc-
Q 037786 390 WKNLKYLKLQSNLLQGPLPVP-PPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQ- 467 (565)
Q Consensus 390 ~~~L~~L~l~~n~~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~- 467 (565)
+.+.++|++.+|.+.+...+. ++.|++|.|+-|+|+...+ +..| .+|++|.|..|.|.++..
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rC--------------trLkElYLRkN~I~sldEL 81 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRC--------------TRLKELYLRKNCIESLDEL 81 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHH--------------HHHHHHHHHhcccccHHHH
Confidence 345667777777776544433 7777777777777764333 3344 777777777777777732
Q ss_pred ---cCCCcccEEECCCCcccccCCC--------CCCCCcEee
Q 037786 468 ---ISWKNLGYLDLRSNLLQGPLLV--------PPSSLRVIL 498 (565)
Q Consensus 468 ---~~~~~L~~L~ls~n~l~~~~~~--------~~~~L~~L~ 498 (565)
..+|+|+.|-|..|.-.+...+ .+++|+.||
T Consensus 82 ~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 82 EYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 6677777777777776554433 556666655
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.00069 Score=60.45 Aligned_cols=82 Identities=24% Similarity=0.344 Sum_probs=46.9
Q ss_pred CCccEEEcCCCccCCccCC-CCCCCCeEEcCCC--cccccCCC---CCCCCcEEEccccccCc-cchhhhhhcCCCCCCc
Q 037786 370 DTLSFLDLSHNFITEMKQI-PWKNLKYLKLQSN--LLQGPLPV---PPPRLQFLLASNNQFTG-EIIQSICSSSTLEIPS 442 (565)
Q Consensus 370 ~~L~~L~ls~n~l~~~~~~-~~~~L~~L~l~~n--~~~~~~~~---~~~~L~~L~l~~n~i~~-~~~~~l~~~~~~~~~~ 442 (565)
..++.+.+.+..++++... .+++|++|.++.| ++....+. .+|+|+++++++|+|.. .....+..+
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l------- 115 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKEL------- 115 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhh-------
Confidence 4455555555555555543 5567777777777 44433322 25777777777777653 111223333
Q ss_pred cccccCCCCCcEEeCcCCCCCCC
Q 037786 443 WISEIGKDSLSYLNLSHNFITKM 465 (565)
Q Consensus 443 ~~~~~~~~~L~~L~l~~n~l~~~ 465 (565)
++|..|++.+|..+.+
T Consensus 116 -------~nL~~Ldl~n~~~~~l 131 (260)
T KOG2739|consen 116 -------ENLKSLDLFNCSVTNL 131 (260)
T ss_pred -------cchhhhhcccCCcccc
Confidence 6677777777766666
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.79 E-value=8.6e-05 Score=66.35 Aligned_cols=102 Identities=20% Similarity=0.138 Sum_probs=67.8
Q ss_pred CCCCCEEEccCCcccccCCCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEc
Q 037786 225 LPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALEL 304 (565)
Q Consensus 225 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l 304 (565)
+.+.+.|++.+|.+.+...-...+.|+.|.++-|.|+.. ..+..|.+|++|.++.|.|.+.....-+.++++|+.|+|
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 345666777777776554444566777777777777633 346677888888888888876544556777888888888
Q ss_pred cCCccccccCCc----ccCCCCCccEEE
Q 037786 305 SHNSLSFGTTSK----VNSSFPQIFILS 328 (565)
Q Consensus 305 ~~~~i~~~~~~~----~~~~~~~L~~L~ 328 (565)
..|+..+..... +...+|+|++||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 887765444332 234566777664
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0017 Score=34.26 Aligned_cols=19 Identities=47% Similarity=0.793 Sum_probs=9.8
Q ss_pred CCEEeCCCCcCcccCCCCCC
Q 037786 518 LDVLDLSNNRLSGTIPKCIG 537 (565)
Q Consensus 518 L~~L~l~~n~~~~~~p~~l~ 537 (565)
|++|||++|.++ .+|++++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4554443
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.93 E-value=4.9e-05 Score=76.45 Aligned_cols=81 Identities=21% Similarity=0.150 Sum_probs=47.2
Q ss_pred CCCcEEeCcCCCCCCC-cc------cCCCcccEEECCCCcccccCC--------CCCCCCcEeeccCceeeeccc----h
Q 037786 450 DSLSYLNLSHNFITKM-KQ------ISWKNLGYLDLRSNLLQGPLL--------VPPSSLRVILILNNQFTGEII----H 510 (565)
Q Consensus 450 ~~L~~L~l~~n~l~~~-~~------~~~~~L~~L~ls~n~l~~~~~--------~~~~~L~~L~l~~n~~~~~~~----~ 510 (565)
+.+..+++..+.+... .. ...+.+++++++.|...+... ... .++.++++.|.++..-. .
T Consensus 376 ~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~ 454 (478)
T KOG4308|consen 376 SELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNPITALGTEELQR 454 (478)
T ss_pred cccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccChhhhcchHHHHH
Confidence 4455666666555443 11 556677777777776542111 144 77777777777754432 3
Q ss_pred hhhcCCCCCEEeCCCCcCccc
Q 037786 511 SICDIIALDVLDLSNNRLSGT 531 (565)
Q Consensus 511 ~l~~~~~L~~L~l~~n~~~~~ 531 (565)
..+.-+.+...-+.+|.+...
T Consensus 455 ~~~~~~~~~~~~~~~~~~~~~ 475 (478)
T KOG4308|consen 455 ALALNPGILAIRLRGNVIGRA 475 (478)
T ss_pred HHhcCCCcceeecccCccccc
Confidence 345556666677777766543
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.01 Score=31.27 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=15.3
Q ss_pred CCcEeeccCceeeeccchhhhc
Q 037786 493 SLRVILILNNQFTGEIIHSICD 514 (565)
Q Consensus 493 ~L~~L~l~~n~~~~~~~~~l~~ 514 (565)
+|++||+++|+++ .+|..|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4788888888888 55555654
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.00039 Score=70.05 Aligned_cols=80 Identities=33% Similarity=0.264 Sum_probs=38.3
Q ss_pred CCCcEEeCcCCCCCCCcc-------cCCCc-ccEEECCCCcccccCCC-------CC-CCCcEeeccCceeeecc----c
Q 037786 450 DSLSYLNLSHNFITKMKQ-------ISWKN-LGYLDLRSNLLQGPLLV-------PP-SSLRVILILNNQFTGEI----I 509 (565)
Q Consensus 450 ~~L~~L~l~~n~l~~~~~-------~~~~~-L~~L~ls~n~l~~~~~~-------~~-~~L~~L~l~~n~~~~~~----~ 509 (565)
.++++|.+++|.++.... ...+. +.+++++.|++-+.... .+ ..++.++++.|.|++.- .
T Consensus 204 ~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~ 283 (478)
T KOG4308|consen 204 SSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLA 283 (478)
T ss_pred ccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHH
Confidence 455555555555543210 22233 44455555555431110 12 45556666666655442 2
Q ss_pred hhhhcCCCCCEEeCCCCcCc
Q 037786 510 HSICDIIALDVLDLSNNRLS 529 (565)
Q Consensus 510 ~~l~~~~~L~~L~l~~n~~~ 529 (565)
+.+..+++++++.+++|++.
T Consensus 284 ~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 284 EVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHhhhHHHHHhhcccCccc
Confidence 33344556666666666655
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.028 Score=27.36 Aligned_cols=14 Identities=43% Similarity=0.534 Sum_probs=5.0
Q ss_pred CCcEEeCcCCCCCC
Q 037786 451 SLSYLNLSHNFITK 464 (565)
Q Consensus 451 ~L~~L~l~~n~l~~ 464 (565)
+|++|++++|+++.
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 34444444444443
|
... |
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.051 Score=26.42 Aligned_cols=15 Identities=47% Similarity=0.603 Sum_probs=6.1
Q ss_pred CccEEEcCCCccCCc
Q 037786 371 TLSFLDLSHNFITEM 385 (565)
Q Consensus 371 ~L~~L~ls~n~l~~~ 385 (565)
+|+.|++++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 455555555555443
|
... |
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.0092 Score=51.27 Aligned_cols=37 Identities=16% Similarity=0.111 Sum_probs=26.7
Q ss_pred CccEEEccCCcccccCCccccCCCCCCEEecCCCCCC
Q 037786 36 SLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNL 72 (565)
Q Consensus 36 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~ 72 (565)
.++.++-+++.|.....+.+.+++.++.|.+..|+..
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~ 138 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYF 138 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccch
Confidence 3667777777777777777777777888777777433
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.06 Score=28.94 Aligned_cols=22 Identities=41% Similarity=0.443 Sum_probs=12.9
Q ss_pred CCCcEEEccccccCccchhhhh
Q 037786 412 PRLQFLLASNNQFTGEIIQSIC 433 (565)
Q Consensus 412 ~~L~~L~l~~n~i~~~~~~~l~ 433 (565)
++|++|++++|+|++.....++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhC
Confidence 5677777777777666555544
|
... |
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.054 Score=29.15 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=10.7
Q ss_pred CCCcEeeccCceeeeccchhh
Q 037786 492 SSLRVILILNNQFTGEIIHSI 512 (565)
Q Consensus 492 ~~L~~L~l~~n~~~~~~~~~l 512 (565)
++|++|++++|.|++.....+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 456666666666665544433
|
... |
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=90.77 E-value=0.2 Score=27.47 Aligned_cols=20 Identities=50% Similarity=0.687 Sum_probs=15.4
Q ss_pred CCCCCEEeCCCCcCcccCCCC
Q 037786 515 IIALDVLDLSNNRLSGTIPKC 535 (565)
Q Consensus 515 ~~~L~~L~l~~n~~~~~~p~~ 535 (565)
+++|+.|+|++|.+. .+|++
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 467888888888887 66655
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=90.77 E-value=0.2 Score=27.47 Aligned_cols=20 Identities=50% Similarity=0.687 Sum_probs=15.4
Q ss_pred CCCCCEEeCCCCcCcccCCCC
Q 037786 515 IIALDVLDLSNNRLSGTIPKC 535 (565)
Q Consensus 515 ~~~L~~L~l~~n~~~~~~p~~ 535 (565)
+++|+.|+|++|.+. .+|++
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHH
Confidence 467888888888887 66655
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.16 E-value=0.097 Score=45.20 Aligned_cols=81 Identities=16% Similarity=0.142 Sum_probs=48.1
Q ss_pred CCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCC----CCCCCCcEEEccCC-ccccCCchhhhcCCCcCcc
Q 037786 203 NLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDA----FPSKSLRKLYLTNN-RLHGSIPSSIFELANLTYL 277 (565)
Q Consensus 203 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~----~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L 277 (565)
.++.++-+++.+....-+.+..++.++.|.+.+|.-.+.... ...++|+.|++++| +|++.....+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 456666666666544455566666777777666654321110 14567777777766 5555555566667777777
Q ss_pred cccccc
Q 037786 278 SLASNN 283 (565)
Q Consensus 278 ~l~~n~ 283 (565)
.+.+-.
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 776543
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=87.33 E-value=0.6 Score=25.54 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=12.4
Q ss_pred CCCcEEEcCCCcCCCCCchhh
Q 037786 10 TKLQLLFLDYVDMSTVVPGTL 30 (565)
Q Consensus 10 ~~L~~L~l~~~~~~~~~~~~~ 30 (565)
++|++|++++|.+..+....|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666665554444
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=87.33 E-value=0.6 Score=25.54 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=12.4
Q ss_pred CCCcEEEcCCCcCCCCCchhh
Q 037786 10 TKLQLLFLDYVDMSTVVPGTL 30 (565)
Q Consensus 10 ~~L~~L~l~~~~~~~~~~~~~ 30 (565)
++|++|++++|.+..+....|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456666666666665554444
|
|
| >smart00364 LRR_BAC Leucine-rich repeats, bacterial type | Back alignment and domain information |
|---|
Probab=82.94 E-value=0.9 Score=24.83 Aligned_cols=18 Identities=39% Similarity=0.722 Sum_probs=13.5
Q ss_pred CCCCEEeCCCCcCcccCCC
Q 037786 516 IALDVLDLSNNRLSGTIPK 534 (565)
Q Consensus 516 ~~L~~L~l~~n~~~~~~p~ 534 (565)
++|++|++++|.++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 46788888888877 6665
|
|
| >smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type | Back alignment and domain information |
|---|
Probab=81.04 E-value=1.3 Score=24.87 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=14.0
Q ss_pred CCCcEEEccccccCccchhhhh
Q 037786 412 PRLQFLLASNNQFTGEIIQSIC 433 (565)
Q Consensus 412 ~~L~~L~l~~n~i~~~~~~~l~ 433 (565)
++|++|+|++|.+.......++
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 4567777777777655555444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 565 | ||||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 2e-30 | ||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 1e-17 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 2e-30 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 2e-15 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 2e-16 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 6e-09 | ||
| 2omu_A | 462 | Crystal Structure Of Inla G194s+s Y369s/hec1 Comple | 2e-07 | ||
| 2omt_A | 462 | Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt | 1e-06 | ||
| 2omx_A | 462 | Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX | 1e-06 | ||
| 2omz_A | 466 | Crystal Structure Of Inla Y369a/hec1 Complex Length | 4e-06 | ||
| 2omv_A | 461 | Crystal Structure Of Inla S192n Y369s/hec1 Complex | 7e-06 | ||
| 2omy_A | 461 | Crystal Structure Of Inla S192n/hec1 Complex Length | 8e-06 | ||
| 1o6s_A | 466 | Internalin (Listeria Monocytogenes) E-Cadherin (Hum | 1e-05 | ||
| 3rg1_A | 612 | Crystal Structure Of The Rp105MD-1 Complex Length = | 1e-04 | ||
| 3b2d_A | 603 | Crystal Structure Of Human Rp105MD-1 Complex Length | 3e-04 | ||
| 1xeu_A | 263 | Crystal Structure Of Internalin C From Listeria Mon | 6e-04 | ||
| 3rfs_A | 272 | Design Of A Binding Scaffold Based On Variable Lymp | 8e-04 |
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462 | Back alignment and structure |
|
| >pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462 | Back alignment and structure |
|
| >pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462 | Back alignment and structure |
|
| >pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466 | Back alignment and structure |
|
| >pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461 | Back alignment and structure |
|
| >pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461 | Back alignment and structure |
|
| >pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466 | Back alignment and structure |
|
| >pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612 | Back alignment and structure |
|
| >pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603 | Back alignment and structure |
|
| >pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria Monocytogenes Length = 263 | Back alignment and structure |
|
| >pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 317 bits (815), Expect = 2e-99
Identities = 141/538 (26%), Positives = 209/538 (38%), Gaps = 79/538 (14%)
Query: 34 SSSLTSLSLSYCRIQ---GEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDV 90
+TS+ LS + ++ L+ L+ + L + +++G ++ L LD+
Sbjct: 49 DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNS-HINGSVSGFKCSASLTSLDL 107
Query: 91 SGTRFSGQLPD--SICNLRHLRELHLSQCNFYGFLPASLG-NVTQLAVLSLSFKSFSGHI 147
S SG + S+ + L+ L++S S G + L VL LS S SG
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGAN 167
Query: 148 PPSL---SNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNL 204
+L + + N G + + LD+S+N + IP G L
Sbjct: 168 VVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLGD-CSAL 225
Query: 205 AVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSI 264
L + N LSG + T L+ +++S NQ G + P KSL+ L L N+ G I
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEI 285
Query: 265 PSSIF-ELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQ 323
P + LT L L+ N+F G V P L +L LS N+ S P
Sbjct: 286 PDFLSGACDTLTGLDLSGNHFYGAV-PPFFGSCSLLESLALSSNNFS--------GELPM 336
Query: 324 IFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFIT 383
+L + L LDLS N G++P + + +L LDLS N +
Sbjct: 337 DTLLKMR--------------GLKVLDLSFNEFSGELPESLTNL-SASLLTLDLSSNNFS 381
Query: 384 -----EMKQIPWKNLKYLKLQSNLLQGPLPVPP---PRLQFLLASNNQFTGEIIQSICSS 435
+ Q P L+ L LQ+N G +P L L S N +G I S+ S
Sbjct: 382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441
Query: 436 STLEIPSWISEIGKDSLSYLNLSHN--------FITKMKQISWKNLGYLDLRSNLLQGPL 487
S L L L N + + K L L L N L G +
Sbjct: 442 S--------------KLRDLKLWLNMLEGEIPQELMYV-----KTLETLILDFNDLTGEI 482
Query: 488 LVPPS-----SLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFS 540
P +L I + NN+ TGEI I + L +L LSNN SG IP +G+
Sbjct: 483 --PSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 538
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 260 bits (666), Expect = 7e-78
Identities = 135/449 (30%), Positives = 205/449 (45%), Gaps = 38/449 (8%)
Query: 3 EALVQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFP-ENIFRLSNL 61
+ L L L L VP + S L SL+LS GE P + + ++ L
Sbjct: 287 DFLSGACDTLTGLDLSGNHFYGAVPPFFGSC-SLLESLALSSNNFSGELPMDTLLKMRGL 345
Query: 62 QMVRLKFNSNLSGVFPRS--NWTSPLRCLDVSGTRFSGQLPDSICN--LRHLRELHLSQC 117
+++ L FN SG P S N ++ L LD+S FSG + ++C L+EL+L
Sbjct: 346 KVLDLSFN-EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404
Query: 118 NFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD-IMN 176
F G +P +L N ++L L LSF SG IP SL +L +L D+ L N +G+ P +M
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464
Query: 177 LTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDN 236
+ + L + N LTG IPS S NL + L NN L+G IP W+ L L + LS+N
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524
Query: 237 QLTGHLDAFPS-----KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPY 291
+G++ P+ +SL L L N +G+IP+++F+ + +A+N +G
Sbjct: 525 SFSGNI---PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKR-YV 576
Query: 292 MLAKLVNLAALELSHNSLSF-GTTSKVNSSFPQIFILSLSACNIS-AFPSFLRSLE-LAY 348
+ + N L F G S+ + ++++ + + +
Sbjct: 577 YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636
Query: 349 LDLSENNIDGQIPNWMWEVGK-DTLSFLDLSHNFITEMKQIPW-----KNLKYLKLQSNL 402
LD+S N + G IP E+G L L+L HN I+ IP + L L L SN
Sbjct: 637 LDMSYNMLSGYIPK---EIGSMPYLFILNLGHNDISG--SIPDEVGDLRGLNILDLSSNK 691
Query: 403 LQGPLPVPPPRLQFLLA---SNNQFTGEI 428
L G +P L L SNN +G I
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPI 720
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 258 bits (662), Expect = 3e-77
Identities = 138/545 (25%), Positives = 205/545 (37%), Gaps = 109/545 (20%)
Query: 8 NVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLK 67
+ LQ L L + +P L +LT L LS G P S L+ + L
Sbjct: 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326
Query: 68 FNSNLSGVFPRSNWT--SPLRCLDVSGTRFSGQLPDSICNLR-HLRELHLSQCNFYGFLP 124
N N SG P L+ LD+S FSG+LP+S+ NL L L LS NF G +
Sbjct: 327 SN-NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 385
Query: 125 ASLGNV--TQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFP-DIMNLTRIS 181
+L L L L F+G IPP+LSN +L + L N G P + +L+++
Sbjct: 386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445
Query: 182 RLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGH 241
L + N L G IP ++ L L L N L+G IPS L L I LS+N+LTG
Sbjct: 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 505
Query: 242 LDAFPS-----KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKL 296
P ++L L L+NN G+IP+ + + +L +L L +N F+G + P + K
Sbjct: 506 ---IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI-PAAMFKQ 561
Query: 297 VNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNI 356
++ N ++ + + + +
Sbjct: 562 SGK----IAANFIAG---------------------KRYVYIKNDGMKKECHGAGNLLEF 596
Query: 357 DGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQF 416
G + + T + +++ + N + F
Sbjct: 597 QGIRSEQLNRL--STRNPCNITSRVYGGHTSPTFDNNGSM------------------MF 636
Query: 417 LLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFIT--------KMKQI 468
L S N +G I P I + L LNL HN I+ ++
Sbjct: 637 LDMSYNMLSGYI------------PKEIGSM--PYLFILNLGHNDISGSIPDEVGDLR-- 680
Query: 469 SWKNLGYLDLRSNLLQGPLLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRL 528
L LDL SS N+ G I ++ + L +DLSNN L
Sbjct: 681 ---GLNILDL-------------SS--------NKLDGRIPQAMSALTMLTEIDLSNNNL 716
Query: 529 SGTIP 533
SG IP
Sbjct: 717 SGPIP 721
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 247 bits (634), Expect = 2e-73
Identities = 118/444 (26%), Positives = 190/444 (42%), Gaps = 54/444 (12%)
Query: 126 SLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDI 185
VT + + S + SL +L L + L ++ +G ++ LD+
Sbjct: 48 RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDL 107
Query: 186 SNNQLTGSIPSHGS--GLQNLAVLRLYNNTLSGTIP-SWLFTLPLLRDIDLSDNQLTGHL 242
S N L+G + + S L L + +NTL S L L +DLS N ++G
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGAN 167
Query: 243 DAFPS-----KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLV 297
L+ L ++ N++ G + + NL +L ++SNNFS + P+ L
Sbjct: 168 VVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGI-PF-LGDCS 223
Query: 298 NLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNIS-AFPSF-LRSLELAYLDLSENN 355
L L++S N LS G S+ S+ ++ +L++S+ P L+SL+ YL L+EN
Sbjct: 224 ALQHLDISGNKLS-GDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQ--YLSLAENK 280
Query: 356 IDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIP-----WKNLKYLKLQSNLLQGPLPVP 410
G+IP+++ TL+ LDLS N +P L+ L L SN G LP+
Sbjct: 281 FTGEIPDFLSGACD-TLTGLDLSGNHFYG--AVPPFFGSCSLLESLALSSNNFSGELPMD 337
Query: 411 P----PRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFIT--- 463
L+ L S N+F+G E+P ++ + SL L+LS N +
Sbjct: 338 TLLKMRGLKVLDLSFNEFSG------------ELPESLTNL-SASLLTLDLSSNNFSGPI 384
Query: 464 --KMKQISWKNLGYLDLRSNLLQGPLLVPP-----SSLRVILILNNQFTGEIIHSICDII 516
+ Q L L L++N G + PP S L + + N +G I S+ +
Sbjct: 385 LPNLCQNPKNTLQELYLQNNGFTGKI--PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442
Query: 517 ALDVLDLSNNRLSGTIPKCIGNFS 540
L L L N L G IP+ +
Sbjct: 443 KLRDLKLWLNMLEGEIPQELMYVK 466
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 230 bits (590), Expect = 4e-67
Identities = 112/430 (26%), Positives = 177/430 (41%), Gaps = 45/430 (10%)
Query: 8 NVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFR--LSNLQMVR 65
+ L++L L + + S +P +L NLS+SL +L LS G N+ + + LQ +
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400
Query: 66 LKFNSNLSGVFPRS--NWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFL 123
L+ N +G P + N + L L +S SG +P S+ +L LR+L L G +
Sbjct: 401 LQNN-GFTGKIPPTLSNCSE-LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458
Query: 124 PASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFP-DIMNLTRISR 182
P L V L L L F +G IP LSN L + L +N G+ P I L ++
Sbjct: 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518
Query: 183 LDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHL 242
L +SNN +G+IP+ ++L L L N +GTIP+ +F + + ++
Sbjct: 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 578
Query: 243 DAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAAL 302
K G + L+ ++ S + G ++ L
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG-HTSPTFDNNGSMMFL 637
Query: 303 ELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPN 362
++S+N LS P+ + + L L+L N+I G IP+
Sbjct: 638 DMSYNMLS--------GYIPK----EIGSMP-----------YLFILNLGHNDISGSIPD 674
Query: 363 WMWEVGK-DTLSFLDLSHNFITEMKQIPW-----KNLKYLKLQSNLLQGPLPVPPPRLQF 416
EVG L+ LDLS N + +IP L + L +N L GP+ P QF
Sbjct: 675 ---EVGDLRGLNILDLSSNKLDG--RIPQAMSALTMLTEIDLSNNNLSGPI---PEMGQF 726
Query: 417 LLASNNQFTG 426
+F
Sbjct: 727 ETFPPAKFLN 736
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 3e-19
Identities = 41/178 (23%), Positives = 71/178 (39%), Gaps = 3/178 (1%)
Query: 13 QLLFLDYVDMSTVVPGTLKNLSS-SLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSN 71
Q + ++ +KN + + QG E + RLS +
Sbjct: 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR-V 619
Query: 72 LSGVFPRSNWT-SPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNV 130
G + + LD+S SG +P I ++ +L L+L + G +P +G++
Sbjct: 620 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679
Query: 131 TQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNN 188
L +L LS G IP ++S L LT++DL +N+ G P++ NN
Sbjct: 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNN 737
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 227 bits (581), Expect = 2e-66
Identities = 120/586 (20%), Positives = 216/586 (36%), Gaps = 69/586 (11%)
Query: 17 LDYVDMS----TVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNL 72
+ D S T VP +L +++T L+L++ +++ N R S L + + FN +
Sbjct: 6 HEVADCSHLKLTQVP---DDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TI 61
Query: 73 SGVFPRS-NWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVT 131
S + P L+ L++ S + +L ELHL +
Sbjct: 62 SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121
Query: 132 QLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD---IMNLTRISRLDISNN 188
L L LS S + L L ++ L +N + I + + +L++S+N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181
Query: 189 QLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLF---TLPLLRDIDLSDNQLTG----H 241
Q+ P + L L L N L ++ L +R++ LS++QL+
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241
Query: 242 LDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAA 301
+L L L+ N L+ S L L Y L NN + + L L N+
Sbjct: 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL-FSHSLHGLFNVRY 300
Query: 302 LELSHN----SLSFGTTSKVN----SSFPQIFILSLSACNISAFPSF----LRSLELAYL 349
L L + S+S + K++ + L++ +I S L +L+ YL
Sbjct: 301 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLK--YL 358
Query: 350 DLSEN--NIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPW---KNLKYLKLQSNLLQ 404
LS + ++ + L L+L+ N I++++ + +L+ L L N +
Sbjct: 359 SLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG 418
Query: 405 GPLPVPP----PRLQFLLASNNQFTGEIIQSICSSSTLE-----------IPSWISEIGK 449
L + + S N++ S +L+ + S S
Sbjct: 419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478
Query: 450 -DSLSYLNLSHNFITKMKQ---ISWKNLGYLDLRSNLLQ-----------GPLLVPPSSL 494
+L+ L+LS+N I + + L LDL+ N L L S L
Sbjct: 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 538
Query: 495 RVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFS 540
++ + +N F + D+ L ++DL N L+ N
Sbjct: 539 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQV 584
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 218 bits (557), Expect = 5e-63
Identities = 112/563 (19%), Positives = 198/563 (35%), Gaps = 67/563 (11%)
Query: 7 QNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRL 66
Q + L++L L + ++S + T ++ LT L L IQ + NL + L
Sbjct: 70 QKLPMLKVLNLQHNELSQLSDKTFAFCTN-LTELHLMSNSIQKIKNNPFVKQKNLITLDL 128
Query: 67 KFNSNLSGVFPRSNWTSP-LRCLDVSGTRFSGQLPD--SICNLRHLRELHLSQCNFYGFL 123
N LS + L+ L +S + + I L++L LS F
Sbjct: 129 SHN-GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFS 187
Query: 124 PASLGNVTQLAVLSLSFKSFSGHIPPSLS---NLHQLTDVDLGSNSFDGQFPDI---MNL 177
P + +L L L+ + L + ++ L ++ +
Sbjct: 188 PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKW 247
Query: 178 TRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQ 237
T ++ LD+S N L + L L L N + L L +R ++L +
Sbjct: 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS- 306
Query: 238 LTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLV 297
K ++ L S L L +L++ N+ GI + M L+
Sbjct: 307 ------------FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI-KSNMFTGLI 353
Query: 298 NLAALELSHNSLSFGTTSK---VNSSFPQIFILSLSACNISAFPS--FLRSLELAYLDLS 352
NL L LS++ S T + V+ + + IL+L+ IS S F L LDL
Sbjct: 354 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLG 413
Query: 353 ENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPW---KNLKYLKLQSNLLQGPLPV 409
N I ++ W G + + + LS+N ++ + + +L+ L L+ L+
Sbjct: 414 LNEIGQELTGQEWR-GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS 472
Query: 410 PP-----PRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITK 464
P L L SNN + LE L+L HN + +
Sbjct: 473 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLE--------------ILDLQHNNLAR 518
Query: 465 MKQISWK-----------NLGYLDLRSNLLQGP---LLVPPSSLRVILILNNQFTGEIIH 510
+ + + +L L+L SN + L++I + N
Sbjct: 519 LWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS 578
Query: 511 SICDIIALDVLDLSNNRLSGTIP 533
+ ++L L+L N ++
Sbjct: 579 VFNNQVSLKSLNLQKNLITSVEK 601
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 206 bits (525), Expect = 1e-58
Identities = 102/547 (18%), Positives = 170/547 (31%), Gaps = 82/547 (14%)
Query: 7 QNVTKLQLLFLDYVDMSTVVPGTLKNLS-SSLTSLSLSYCRIQGEFPENIFRLSNLQMVR 65
+ LQ L L + + L + SSL L LS +I+ P + L +
Sbjct: 142 VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLF 201
Query: 66 LKFNSNLSGVFPRSNW----TSPLRCLDVSGTRFSGQLPDSICNLR--HLRELHLSQCNF 119
L L + +R L +S ++ S + L+ +L L LS N
Sbjct: 202 LNNV-QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260
Query: 120 YGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTR 179
S + QL L + + SL L + ++L +
Sbjct: 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS-------------- 306
Query: 180 ISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLT 239
++ IS L L+ L L + +N + G + L L+ + LS++ +
Sbjct: 307 FTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366
Query: 240 GH------LDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYML 293
+ L L LT N++ + L +L L L N +
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW 426
Query: 294 AKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAF---PSFLRSLE-LAYL 349
L N+ + LS+N T + P + L L + PS + L L L
Sbjct: 427 RGLENIFEIYLSYNKYL-QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485
Query: 350 DLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPV 409
DLS NNI + + G + L LDL HN + + + L+
Sbjct: 486 DLSNNNIANINDDML--EGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGL-------- 535
Query: 410 PPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQIS 469
L L +N F ++ L ++L N + +
Sbjct: 536 --SHLHILNLESNGFDEIPVEVFKDLF--------------ELKIIDLGLNNLNTLPASV 579
Query: 470 W---KNLGYLDLRSNLLQGPLLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNN 526
+ +L L+L+ NL+ V L LD+ N
Sbjct: 580 FNNQVSLKSLNLQKNLITS---VEKKVFGPAFR-----------------NLTELDMRFN 619
Query: 527 RLSGTIP 533
T
Sbjct: 620 PFDCTCE 626
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 1e-39
Identities = 84/401 (20%), Positives = 130/401 (32%), Gaps = 54/401 (13%)
Query: 178 TRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQ 237
D S+ +LT +P N+ VL L +N L + L +D+ N
Sbjct: 4 VSHEVADCSHLKLT-QVPD--DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60
Query: 238 LTG-HLDAFPS-KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAK 295
++ + L+ L L +N L + NLT L L SN+ I + K
Sbjct: 61 ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI-KNNPFVK 119
Query: 296 LVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFP----SFLRSLELAYLDL 351
NL L+LSHN LS T + L LS I A + L L+L
Sbjct: 120 QKNLITLDLSHNGLS-STKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178
Query: 352 SENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEM------KQIPWKNLKYLKLQSNLLQG 405
S N I P +G+ L L L++ + ++ +++ L L ++ L
Sbjct: 179 SSNQIKEFSPGCFHAIGR--LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST 236
Query: 406 PLPV-----PPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHN 460
L L S N S LE Y L +N
Sbjct: 237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLE--------------YFFLEYN 282
Query: 461 FITKMKQISWKNLG---YLDLRSNLLQGPL------------LVPPSSLRVILILNNQFT 505
I + S L YL+L+ + + + L + + +N
Sbjct: 283 NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342
Query: 506 GEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSPWCQTK 546
G + +I L L LSN+ S F +
Sbjct: 343 GIKSNMFTGLINLKYLSLSNSFTSLRTL-TNETFVSLAHSP 382
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 4e-33
Identities = 54/305 (17%), Positives = 109/305 (35%), Gaps = 23/305 (7%)
Query: 7 QNVTKLQLLFLDYVDMS--TVVPGTLKNLS-SSLTSLSLSYCRIQGEFPENIFRLSNLQM 63
+ L+ L L S T+ T +L+ S L L+L+ +I + L +L++
Sbjct: 350 TGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409
Query: 64 VRLKFNSNLSGVFPRSNWTSP--LRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYG 121
+ L N + W + + +S ++ +S + L+ L L +
Sbjct: 410 LDLGLN-EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468
Query: 122 F--LPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSF---------DGQ 170
P+ + L +L LS + + L L +L +DL N+ G
Sbjct: 469 VDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGP 528
Query: 171 FPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRD 230
+ L+ + L++ +N L L ++ L N L+ S L+
Sbjct: 529 IYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 588
Query: 231 IDLSDNQLTG-HLDAFPS--KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGI 287
++L N +T F ++L +L + N + S + +++ N +
Sbjct: 589 LNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESI---AWFVNWINETHTNIPEL 645
Query: 288 VEPYM 292
Y+
Sbjct: 646 SSHYL 650
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 210 bits (536), Expect = 1e-60
Identities = 107/544 (19%), Positives = 187/544 (34%), Gaps = 61/544 (11%)
Query: 31 KNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRS--NWTSPLRCL 88
NL S +L LS+ ++ + F LQ++ L + + + + + L L
Sbjct: 24 DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSH-LSTL 81
Query: 89 DVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSF-SGHI 147
++G + L L++L + N +G++ L L+++ S +
Sbjct: 82 ILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141
Query: 148 PPSLSNLHQLTDVDLGSNSFDGQFP-DIMNLTRIS----RLDISNNQLTGSIPSHGSGLQ 202
P SNL L +DL SN + D+ L ++ LD+S N + P +
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI- 200
Query: 203 NLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSDNQLTGH-----LDAFPSKSLRKLYLT 256
L L L NN S + L L L + D + L L +
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260
Query: 257 NNRL------HGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLS 310
RL I L N++ SL S + + + LEL +
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHLELVNCKF- 316
Query: 311 FGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKD 370
+ L+ ++ S + L +LDLS N + + + G
Sbjct: 317 ---GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373
Query: 371 TLSFLDLSHNFITEM--KQIPWKNLKYLKLQSNLLQGPLPVPP----PRLQFLLASNNQF 424
+L +LDLS N + M + + L++L Q + L+ L +L S+
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 425 TGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISW------KNLGYLDL 478
S SL L ++ N + +NL +LDL
Sbjct: 434 RVAFNGIFNGLS--------------SLEVLKMAGNSFQE--NFLPDIFTELRNLTFLDL 477
Query: 479 RSNLLQGP---LLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKC 535
L+ SSL+V+ + +N F + +L VLD S N + + +
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 537
Query: 536 IGNF 539
+ +F
Sbjct: 538 LQHF 541
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 180 bits (460), Expect = 6e-50
Identities = 112/554 (20%), Positives = 172/554 (31%), Gaps = 67/554 (12%)
Query: 7 QNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRL 66
Q+++ L L L + ++ G L SSL L + I L L+ + +
Sbjct: 73 QSLSHLSTLILTGNPIQSLALGAFSGL-SSLQKLVAVETNLASLENFPIGHLKTLKELNV 131
Query: 67 KFNSNLSGVFPRSNWTSP-LRCLDVSGTRFSGQLPDSICNLRHLR----ELHLSQCNFYG 121
N S P L LD+S + + L + L LS
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191
Query: 122 FLPASLGNVTQLAVLSLSFKSFSGHIPP-SLSNLHQLTDVDLGSNSFDGQFPDIMNLTRI 180
P + +L L+L S ++ + L L L F
Sbjct: 192 IQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR------------ 238
Query: 181 SRLDISNNQLTGSIPSHGSGLQNLAVLRL---YNNTLSGTIPSWLFTLPLLRDIDLSDNQ 237
+ L S GL NL + Y + I L + L
Sbjct: 239 -----NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT 293
Query: 238 LTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLV 297
+ D + + L L N + + L LT+ S N + L
Sbjct: 294 IERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN------AFSEVDLP 347
Query: 298 NLAALELSHNSLSF-GTTSKVNSSFPQIFILSLSACNISAFP-SFLRSLELAYLDLSENN 355
+L L+LS N LSF G S+ + + L LS + +FL +L +LD +N
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 407
Query: 356 IDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKN---LKYLKLQSNLLQGPLP---- 408
+ ++ L +LD+SH + L+ LK+ N Q
Sbjct: 408 LKQMSEFSVFL-SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466
Query: 409 VPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQI 468
L FL S Q + S S SL LN+SHN +
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLS--------------SLQVLNMSHNNFFSLDTF 512
Query: 469 SW---KNLGYLDLRSNLLQGP----LLVPPSSLRVILILNNQFTG--EIIHSICDIIALD 519
+ +L LD N + L PSSL + + N F E + I
Sbjct: 513 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQR 572
Query: 520 VLDLSNNRLSGTIP 533
L + R+ P
Sbjct: 573 QLLVEVERMECATP 586
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 178 bits (454), Expect = 5e-49
Identities = 91/475 (19%), Positives = 155/475 (32%), Gaps = 66/475 (13%)
Query: 79 SNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSL 138
N + LD+S S + L+ L LS+C + +++ L+ L L
Sbjct: 24 DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83
Query: 139 SFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD-IMNLTRISRLDISNNQLTG-SIPS 196
+ + S L L + + I +L + L++++N + +P
Sbjct: 84 TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 143
Query: 197 HGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLR----DIDLSDNQLTG-HLDAFPSKSLR 251
+ S L NL L L +N + + L L + +DLS N + AF L
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLH 203
Query: 252 KLYLTNNRLHGSIPSSIFE-LANLTYLSLASNNFSGI--VEPYMLAKLVNLAALELSHNS 308
KL L NN ++ + + LA L L F +E + + L L L +
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263
Query: 309 LSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVG 368
L++ L +I + L ++ L I+
Sbjct: 264 LAY---------------LDYYLDDIIDLFNCLTNVS--SFSLVSVTIERVKDF----SY 302
Query: 369 KDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLP-VPPPRLQFLLASNNQFTGE 427
L+L + + + K+LK L SN V P L+FL S N + +
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 362
Query: 428 IIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM--KQISWKNLGYLDLRSNLLQG 485
G SL YL+LS N + M + + L +LD + + L+
Sbjct: 363 GC----------CSQSDF--GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ 410
Query: 486 PLLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFS 540
+ S + L LD+S+ S
Sbjct: 411 --MSEFSVF------------------LSLRNLIYLDISHTHTRVAFNGIFNGLS 445
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 8e-04
Identities = 16/109 (14%), Positives = 31/109 (28%), Gaps = 23/109 (21%)
Query: 433 CSSSTL-EIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLLVPP 491
C +IP + S L+LS N + + S+ +
Sbjct: 14 CMELNFYKIPDNLPF----STKNLDLSFNPLRHLGSYSFFSF------------------ 51
Query: 492 SSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFS 540
L+V+ + + + + L L L+ N + S
Sbjct: 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 209 bits (533), Expect = 9e-59
Identities = 85/552 (15%), Positives = 173/552 (31%), Gaps = 69/552 (12%)
Query: 20 VDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRS 79
+DM PG + + +T LSL+ +G P+ I +L+ L+++ +S
Sbjct: 308 LDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFG 367
Query: 80 NWTSPLRCLDVSGTRFSGQL-PDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSL 138
+ + R + + L L Q + + + + +SL
Sbjct: 368 DEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP--EMKPIKKDSRISL 425
Query: 139 SFKSFSGH------IPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTG 192
I ++ L +L + ++ F + + +
Sbjct: 426 KDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWED----ANSDYAKQYE 481
Query: 193 SIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRK 252
+ S L++L + LYN +P +L+ LP L+ ++++ N+
Sbjct: 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD----- 536
Query: 253 LYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFG 312
+ + + NN L K+V L L+ HN +
Sbjct: 537 --------WTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--- 585
Query: 313 TTSKVNSSFPQIFILSLSACNISAFPSFLRSL--ELAYLDLSENNIDGQIPNWMWEVGKD 370
+ + ++ L L I P + ++ L S N + IPN
Sbjct: 586 RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVY 644
Query: 371 TLSFLDLSHNFITE--------MKQIPWKNLKYLKLQSNLLQGPLPVPP------PRLQF 416
+ +D S+N I M N + L N +Q P +
Sbjct: 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK---FPTELFATGSPIST 701
Query: 417 LLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITK----MKQISWKN 472
++ SNN T I ++ + L+ ++L N +T + +
Sbjct: 702 IILSNNLMT-SIPENSLKPKDGNYKNTY------LLTTIDLRFNKLTSLSDDFRATTLPY 754
Query: 473 LGYLDLRSNLLQG--PLLVPPSSLRVILIL------NNQFTGEIIHSICDIIALDVLDLS 524
L +D+ N + S L+ I N+ + I +L L +
Sbjct: 755 LSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG 814
Query: 525 NNRLSGTIPKCI 536
+N + + + +
Sbjct: 815 SNDIR-KVDEKL 825
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 191 bits (486), Expect = 2e-52
Identities = 93/595 (15%), Positives = 173/595 (29%), Gaps = 120/595 (20%)
Query: 6 VQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVR 65
+ N ++ L L VP + L+ L LS M
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTE-LKVLSFGTHSETVSGRLFGDEELTPDMSE 377
Query: 66 LKFNSNLSGVFPRSNWTSP-LRCLDVSGTRFSG--------------------------- 97
+ + L D+ +
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI 437
Query: 98 -QLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQ 156
+ +I L L+ ++ + F A + + + S SNL
Sbjct: 438 TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWED-----ANSDYAKQYENEELSWSNLKD 492
Query: 157 LTDVDLGSNSFDGQFPD-IMNLTRISRLDISNNQLTG---------SIPSHGSGLQNLAV 206
LTDV+L + Q PD + +L + L+I+ N+ + + +
Sbjct: 493 LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552
Query: 207 LRLYNNTLSGTIPSWLFT-LPLLRDIDLSDNQLTGHLDAFPS-KSLRKLYLTNNRLHGSI 264
+ N L S + L +D N++ HL+AF + L L L N++ I
Sbjct: 553 FYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EI 610
Query: 265 PSSIFELA-NLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQ 323
P + L + N I + + + +++ S+N + S +
Sbjct: 611 PEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIG---------SEGR 661
Query: 324 IFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFIT 383
NIS + + + + LS N I +S + LS+N +T
Sbjct: 662 ---------NISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSP--ISTIILSNNLMT 710
Query: 384 E-----MKQIP-----WKNLKYLKLQSNLLQGPLPVPP-------PRLQFLLASNNQFTG 426
+K L + L+ N L + P L + S N F+
Sbjct: 711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS---LSDDFRATTLPYLSNMDVSYNCFS- 766
Query: 427 EIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQIS---------WKNLGYLD 477
P+ + L + H + +I +L L
Sbjct: 767 ------------SFPTQPLNSSQ--LKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQ 812
Query: 478 LRSNLLQGPLLVPP---SSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLS 529
+ SN ++ V L ++ I +N + S+C I + L ++
Sbjct: 813 IGSNDIRK---VDEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 5e-28
Identities = 52/305 (17%), Positives = 100/305 (32%), Gaps = 31/305 (10%)
Query: 3 EALVQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFR-LSNL 61
A +Q + KL LL + + + LT L L Y +I+ E PE+ +
Sbjct: 566 SASLQKMVKLGLLDCVHNKVRHL--EAFGTNVK-LTDLKLDYNQIE-EIPEDFCAFTDQV 621
Query: 62 QMVRLKFN--SNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPD-----SICNLRHLRELHL 114
+ + N + +F + + +D S + + + + + L
Sbjct: 622 EGLGFSHNKLKYIPNIFNAKSVYV-MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTL 680
Query: 115 SQCNFYGFLPASLGNVTQLAVLSLSFKSFS-------GHIPPSLSNLHQLTDVDLGSNSF 167
S F + ++ + LS + + N + LT +DL N
Sbjct: 681 SYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL 740
Query: 168 DGQFPDIM--NLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRL------YNNTLSGTIP 219
D L +S +D+S N + S P+ L + N + P
Sbjct: 741 TSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP 799
Query: 220 SWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRL-HGSIPSSIFELANLTYLS 278
+ + T P L + + N + +D + L L + +N + S + Y+
Sbjct: 800 TGITTCPSLIQLQIGSNDIR-KVDEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVL 858
Query: 279 LASNN 283
L
Sbjct: 859 LYDKT 863
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 205 bits (523), Expect = 2e-58
Identities = 88/578 (15%), Positives = 181/578 (31%), Gaps = 111/578 (19%)
Query: 16 FLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGV 75
F +DM PG N + +T LSL G P+ I +L+ L+++ L +
Sbjct: 62 FNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN- 120
Query: 76 FPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLG--NVTQL 133
P I + + ++ + + L
Sbjct: 121 -------------------ERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDL 161
Query: 134 AVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTG- 192
++ I S + T + SN+ +M LT++ + + N+
Sbjct: 162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAE 221
Query: 193 ------------------SIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLS 234
+ L++L + +YN +P++L LP ++ I+++
Sbjct: 222 NICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281
Query: 235 DNQLTGHLDAFPS----------KSLRKLYLTNNRL-HGSIPSSIFELANLTYLSLASNN 283
N+ + ++ +Y+ N L + +S+ ++ L L N
Sbjct: 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ 341
Query: 284 FSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPS--FL 341
G + + LA+L L++N ++ + Q+ LS + + P+
Sbjct: 342 LEGKLPA--FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDA 398
Query: 342 RSLE-LAYLDLSENNIDGQIPNWMWEVGKDT-----LSFLDLSHNFITEMKQIP-----W 390
+S+ ++ +D S N I + +S ++LS+N I+ K
Sbjct: 399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS--KFPKELFSTG 456
Query: 391 KNLKYLKLQSNLLQG-----PLPVPP-----PRLQFLLASNNQFTGEIIQSICSSSTLEI 440
L + L N+L L + N+ T +
Sbjct: 457 SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-------------L 503
Query: 441 PSWISEIGKDSLSYLNLSHNFITKM-KQI-SWKNLGYLDLRSNLLQGPLLVPPSSLRVIL 498
L ++LS+N +K Q + L +R+
Sbjct: 504 SDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQR---------------D 548
Query: 499 ILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCI 536
N+ E I +L L + +N + + + I
Sbjct: 549 AQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKI 585
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 200 bits (511), Expect = 6e-57
Identities = 68/460 (14%), Positives = 158/460 (34%), Gaps = 62/460 (13%)
Query: 24 TVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRS--NW 81
T V + L+ L + E + N + + N
Sbjct: 196 TFVSKAVMRLTK-LRQFYMGNSPFVAENICEAWENENSE------YAQQYKTEDLKWDNL 248
Query: 82 TSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGF--------LPASLGNVTQL 133
L ++V +LP + L ++ ++++ A ++
Sbjct: 249 KD-LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKI 307
Query: 134 AVLSLSFKSF-SGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTG 192
++ + + + + + SL + +L ++ N +G+ P + +++ L+++ NQ+T
Sbjct: 308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITE 367
Query: 193 SIPSHGSGLQNLAVLRLYNNTLSGTIPSWLF--TLPLLRDIDLSDNQLTG----HLDAFP 246
+ + + L +N L IP+ ++ ++ ID S N++ + D
Sbjct: 368 IPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426
Query: 247 S-----KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGI------VEPYMLAK 295
++ + L+NN++ + L+ ++L N + I E
Sbjct: 427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKN 486
Query: 296 LVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLE-------LAY 348
L +++L N L+ + ++ P + + LS + S FP+ +
Sbjct: 487 TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQ 546
Query: 349 LDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIP---WKNLKYLKLQSN-LLQ 404
D N + P + L+ L + N I + + N+ L ++ N +
Sbjct: 547 RDAQGNRTLREWPEGITLCPS--LTQLQIGSNDIRK---VNEKITPNISVLDIKDNPNIS 601
Query: 405 GPLPVPPPRLQ---FLLASNNQFTGEIIQSICSSSTLEIP 441
L P ++ ++L + Q I L+I
Sbjct: 602 IDLSYVCPYIEAGMYMLFYDK------TQDIRGCDALDIK 635
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 165 bits (419), Expect = 3e-44
Identities = 63/479 (13%), Positives = 140/479 (29%), Gaps = 96/479 (20%)
Query: 79 SNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSL 138
+NW + + Q S+ + + L L G +P ++G +T+L VL+L
Sbjct: 58 ANWNF-----NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLAL 112
Query: 139 SFKSFSG----HIPPSLSNLHQLTDVDLGSNSFDGQFPDIM---NLTRISRLDISNNQLT 191
P +S + F D + + + + I+++
Sbjct: 113 GSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQ 172
Query: 192 GSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLR 251
SI + +N ++ + + L LR + ++ ++
Sbjct: 173 KSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAEN---ICEAWE 228
Query: 252 KLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSF 311
+ + + L +LT + + + + P L L + + ++ N
Sbjct: 229 NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL-PTFLKALPEMQLINVACNRGIS 287
Query: 312 GTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNI-DGQIPNWMWEVGKD 370
G K + A ++ + + NN+ + + ++ K
Sbjct: 288 GEQLKDD---------------WQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKK- 331
Query: 371 TLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPP-----PRLQFLLASNNQFT 425
L L+ +N + P +L L + NQ T
Sbjct: 332 -LGMLECLYNQLEG------------------------KLPAFGSEIKLASLNLAYNQIT 366
Query: 426 GEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITK----MKQISWKNLGYLDLRSN 481
I + C + + L+ +HN + S + +D N
Sbjct: 367 E-IPANFCGFTE-------------QVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYN 412
Query: 482 LLQGPLLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFS 540
+ + F + + I + ++LSNN++S + S
Sbjct: 413 EIGS-------------VDGKNFDP-LDPTPFKGINVSSINLSNNQISKFPKELFSTGS 457
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 195 bits (498), Expect = 3e-55
Identities = 89/541 (16%), Positives = 173/541 (31%), Gaps = 48/541 (8%)
Query: 7 QNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRL 66
+ L L L + + T ++ L +L L+ + + L+ +
Sbjct: 54 SRLINLTFLDLTRCQIYWIHEDTFQSQHR-LDTLVLTANPLIFMAETALSGPKALKHLFF 112
Query: 67 KFNSNLSGVFPRS-NWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPA 125
+S + + L L + S L+ L +
Sbjct: 113 IQT-GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171
Query: 126 SLGNVTQLAVLSLSFKS-FSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIM---NLTRIS 181
+ ++ Q LSL+ I P + ++ G + + +
Sbjct: 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLW 231
Query: 182 RLDISNNQLTGSIPSHGSGLQNLAV--LRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLT 239
+ P+ GL ++V + L + + L+++DL+ L+
Sbjct: 232 LGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS 291
Query: 240 GHLDAFPS-KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVN 298
+L+KL L+ N+ S +LT+LS+ N + L L N
Sbjct: 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351
Query: 299 LAALELSHNSLSF-GTTSKVNSSFPQIFILSLSACNISAFPS--FLRSLELAYLDLSENN 355
L L+LSH+ + + + + L+LS + + F +L LDL+
Sbjct: 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411
Query: 356 IDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQ 415
+ + ++ L L+LSH+ + + L P LQ
Sbjct: 412 LKVKDAQSPFQ-NLHLLKVLNLSHSLLDI---SSEQLFDGL---------------PALQ 452
Query: 416 FLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLG- 474
L N F IQ S TL L L LS ++ + Q ++ +L
Sbjct: 453 HLNLQGNHFPKGNIQKTNSLQTLG-----------RLEILVLSFCDLSSIDQHAFTSLKM 501
Query: 475 --YLDLRSNLLQG--PLLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSG 530
++DL N L + + + +N + + + + ++L N L
Sbjct: 502 MNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561
Query: 531 T 531
T
Sbjct: 562 T 562
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 179 bits (455), Expect = 3e-49
Identities = 95/538 (17%), Positives = 166/538 (30%), Gaps = 76/538 (14%)
Query: 32 NLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVS 91
L +S L S+ + RL NL LD++
Sbjct: 30 TLPNSTECLEFSFNVLPTIQNTTFSRLINLTF------------------------LDLT 65
Query: 92 GTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSL 151
+ D+ + L L L+ +L L L S L
Sbjct: 66 RCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPL 125
Query: 152 SNLHQLTDVDLGSNSFDG-QFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLY 210
N L + LGSN + P ++ LD NN + S LQ L L
Sbjct: 126 HNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLN 185
Query: 211 --NNTLSGTIPSWLFTLPLLRDIDLSDNQLTG----HLDAFPSKSLRKLYLTNNRLHGSI 264
N ++ I F + + ++ Q L +SL +
Sbjct: 186 LNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244
Query: 265 PSSIFELA--NLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFP 322
P+ L ++ ++L + F I L L+L+ LS
Sbjct: 245 PAVFEGLCEMSVESINLQKHYFFNI-SSNTFHCFSGLQELDLTATHLS--ELPSGLVGLS 301
Query: 323 QIFILSLSACNISAFP--SFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHN 380
+ L LSA S L +L + N ++ E + L LDLSH+
Sbjct: 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE-NLENLRELDLSHD 360
Query: 381 FITEMKQIPW-----KNLKYLKLQSNLLQGPLPVPP------PRLQFLLASNNQFTGEII 429
I +L+ L L N + P+L+ L + + +
Sbjct: 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLS---LKTEAFKECPQLELLDLAFTRLKVKDA 417
Query: 430 QSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISW---KNLGYLDLRSNLLQGP 486
QS + L LNLSH+ + + + L +L+L+ N
Sbjct: 418 QSPFQNLH-------------LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464
Query: 487 LLVPP------SSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGN 538
+ L ++++ + H+ + ++ +DLS+NRL+ + + + +
Sbjct: 465 NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 171 bits (436), Expect = 1e-46
Identities = 75/466 (16%), Positives = 144/466 (30%), Gaps = 41/466 (8%)
Query: 98 QLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQL 157
++P ++ L S + + L L L+ + + H+L
Sbjct: 26 EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRL 83
Query: 158 TDVDLGSNSFDGQFPDIM-NLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSG 216
+ L +N + + L ++ + L L L +N +S
Sbjct: 84 DTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS 143
Query: 217 TIPSWLFTLPLLRDIDLSDNQLT----GHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELA 272
F L+ +D +N + + + + L L N + I F+ A
Sbjct: 144 IKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI-AGIEPGAFDSA 202
Query: 273 NLTYLSLASNNFSG-IVEPYMLAKLVNLAALELSHNSLS-FGTTSKVNSSFPQIFILSLS 330
L+ I + + + +L + ++L
Sbjct: 203 VFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQ 262
Query: 331 ACNISAFP--SFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI 388
+F L LDL+ ++ ++P+ + G TL L LS N + QI
Sbjct: 263 KHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLV--GLSTLKKLVLSANKFENLCQI 319
Query: 389 ---PWKNLKYLKLQSNLLQGPLP----VPPPRLQFLLASNNQFTGEIIQSICSSSTLEIP 441
+ +L +L ++ N + L L+ L S++ I S C + L
Sbjct: 320 SASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD----IETSDCCNLQLR-- 373
Query: 442 SWISEIGKDSLSYLNLSHNFITKMKQISWKNLG---YLDLRSNLLQG----PLLVPPSSL 494
L LNLS+N +K ++K LDL L+ L
Sbjct: 374 ------NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427
Query: 495 RVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFS 540
+V+ + ++ + AL L+L N + +
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ 473
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 2e-21
Identities = 60/260 (23%), Positives = 102/260 (39%), Gaps = 29/260 (11%)
Query: 7 QNVTKLQLLFLDY--VDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMV 64
+N+ L+ L L + ++ S L+NLS L SL+LSY E L+++
Sbjct: 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSH-LQSLNLSYNEPLSLKTEAFKECPQLELL 405
Query: 65 RLKFNSNLSGVFPRSNWTSP--LRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGF 122
L F L +S + + L+ L++S + L L+ L+L +F
Sbjct: 406 DLAFT-RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464
Query: 123 ---LPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTR 179
SL + +L +L LSF S + ++L + VDL N + ++ +
Sbjct: 465 NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK 524
Query: 180 ISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTI-----PSWL------------ 222
L++++N ++ +PS L + L N L T W
Sbjct: 525 GIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTED 584
Query: 223 ---FTLPLLRDIDLSDNQLT 239
PLLR + LSD L+
Sbjct: 585 TLCENPPLLRGVRLSDVTLS 604
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 181 bits (461), Expect = 1e-52
Identities = 71/287 (24%), Positives = 114/287 (39%), Gaps = 36/287 (12%)
Query: 32 NLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVS 91
LSS L + G + + + + L NL
Sbjct: 23 TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDL-SGLNLPK----------------- 64
Query: 92 GTRFSGQLPDSICNLRHLRELHLSQCN-FYGFLPASLGNVTQLAVLSLSFKSFSGHIPPS 150
+P S+ NL +L L++ N G +P ++ +TQL L ++ + SG IP
Sbjct: 65 ----PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF 120
Query: 151 LSNLHQLTDVDLGSNSFDGQFP-DIMNLTRISRLDISNNQLTGSIPSHGSGLQNLA-VLR 208
LS + L +D N+ G P I +L + + N+++G+IP L +
Sbjct: 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180
Query: 209 LYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPS-----KSLRKLYLTNNRLHGS 263
+ N L+G IP L L +DLS N L G K+ +K++L N L
Sbjct: 181 ISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDA---SVLFGSDKNTQKIHLAKNSLAFD 236
Query: 264 IPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLS 310
+ + NL L L +N G + P L +L L +L +S N+L
Sbjct: 237 LG-KVGLSKNLNGLDLRNNRIYGTL-PQGLTQLKFLHSLNVSFNNLC 281
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 180 bits (459), Expect = 2e-52
Identities = 72/279 (25%), Positives = 118/279 (42%), Gaps = 41/279 (14%)
Query: 112 LHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSG--HIPPSLSNLHQLTDVDL-GSNSFD 168
+ G L + ++ L LS + IP SL+NL L + + G N+
Sbjct: 31 TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90
Query: 169 GQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPL 227
G P I LT++ L I++ ++G+IP S ++ L L N LSGT+P + +LP
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150
Query: 228 LRDIDLSDNQLTGHLDAFP------SKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLAS 281
L I N+++G + P SK + ++ NRL G IP + L NL ++ L+
Sbjct: 151 LVGITFDGNRISGAI---PDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSR 206
Query: 282 NNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFL 341
N G + N + L+ NSL+F ++
Sbjct: 207 NMLEGDA-SVLFGSDKNTQKIHLAKNSLAF--------DLGKV--------------GLS 243
Query: 342 RSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHN 380
++L LDL N I G +P + ++ L L++S N
Sbjct: 244 KNLN--GLDLRNNRIYGTLPQGLTQL--KFLHSLNVSFN 278
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 148 bits (377), Expect = 1e-40
Identities = 53/233 (22%), Positives = 98/233 (42%), Gaps = 9/233 (3%)
Query: 8 NVTKLQLLFL-DYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRL 66
N+ L L++ ++ +P + L+ L L +++ + G P+ + ++ L +
Sbjct: 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQ-LHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132
Query: 67 KFNSNLSGVFPRS--NWTSPLRCLDVSGTRFSGQLPDSICNLRHLRE-LHLSQCNFYGFL 123
+N LSG P S + + L + G R SG +PDS + L + +S+ G +
Sbjct: 133 SYN-ALSGTLPPSISSLPN-LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190
Query: 124 PASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRL 183
P + N+ LA + LS G + + L NS + ++ L
Sbjct: 191 PPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGL 249
Query: 184 DISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDN 236
D+ NN++ G++P + L+ L L + N L G IP L ++N
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANN 301
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 126 bits (320), Expect = 8e-33
Identities = 73/375 (19%), Positives = 110/375 (29%), Gaps = 131/375 (34%)
Query: 183 LDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGT--IPSWLFTLPLLRDIDLSDNQLTG 240
D N G + + + L L L IPS L LP L + +
Sbjct: 31 TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI---- 86
Query: 241 HLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLA 300
N L G IP +I +L L YL + N SG +
Sbjct: 87 -----------------NNLVGPIPPAIAKLTQLHYLYITHTNVSGAI------------ 117
Query: 301 ALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSL-ELAYLDLSENNIDGQ 359
P FL + L LD S N + G
Sbjct: 118 -------------------------------------PDFLSQIKTLVTLDFSYNALSGT 140
Query: 360 IPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVP----PPRLQ 415
+P +S L NL + N + G +P
Sbjct: 141 LPPS--------ISSL---------------PNLVGITFDGNRISGAIPDSYGSFSKLFT 177
Query: 416 FLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFIT--------KMKQ 467
+ S N+ TG+I P +L++++LS N + K
Sbjct: 178 SMTISRNRLTGKI------------PP---TFANLNLAFVDLSRNMLEGDASVLFGSDK- 221
Query: 468 ISWKNLGYLDLRSNLLQGPL--LVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSN 525
N + L N L L + +L + + NN+ G + + + L L++S
Sbjct: 222 ----NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277
Query: 526 NRLSGTIPKCIGNFS 540
N L G IP+ GN
Sbjct: 278 NNLCGEIPQ-GGNLQ 291
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 183 bits (466), Expect = 9e-51
Identities = 98/542 (18%), Positives = 173/542 (31%), Gaps = 56/542 (10%)
Query: 31 KNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRS--NWTSPLRCL 88
++ SS ++ LS+ ++ + S LQ + L + + ++ L L
Sbjct: 28 DDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHH-LSNL 85
Query: 89 DVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSG-HI 147
++G P S L L L + +G + L L+++ +
Sbjct: 86 ILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKL 145
Query: 148 PPSLSNLHQLTDVDLGSNSFDG-QFPDIMNLTRIS----RLDISNNQLTGSIPSHGSGLQ 202
P SNL L VDL N D+ L LD+S N + I
Sbjct: 146 PAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGI 204
Query: 203 NLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSDNQLTGH----------LDAFPSKSLR 251
L L L N S I L L L + ++ ++
Sbjct: 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID 264
Query: 252 KLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSF 311
+ LT LAN++ +SLA + + + + K +L + L
Sbjct: 265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED---VPKHFKWQSLSIIRCQL-- 319
Query: 312 GTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDT 371
P + L+L+ S + L+YLDLS N + ++G ++
Sbjct: 320 --KQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377
Query: 372 LSFLDLSHNFITEMKQIPW--KNLKYLKLQSNLLQGPLPVPP----PRLQFLLASNNQFT 425
L LDLS N M + L++L Q + L+ +L +L S
Sbjct: 378 LRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437
Query: 426 GEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISW----KNLGYLDLRSN 481
+ ++L L ++ N + NL +LDL
Sbjct: 438 IDFDGIFLGLTSLN--------------TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483
Query: 482 LLQGP---LLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGN 538
L+ + L+++ + +N + +L LD S NR+ +
Sbjct: 484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHF 543
Query: 539 FS 540
Sbjct: 544 PK 545
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 3e-40
Identities = 90/422 (21%), Positives = 153/422 (36%), Gaps = 33/422 (7%)
Query: 4 ALVQNVTKLQLLFLDYVDMSTVVPGT---LKNLSSSLTSLSLSYCRIQGEFPENIFRLSN 60
A N+T L + L Y + T+ L+ SL +S I + F+
Sbjct: 147 AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIK 205
Query: 61 LQMVRLKFNSNLSGVFPRSNWT-SPLRCLDVSGTRFSG---------QLPDSICNLRHLR 110
L + L+ N N S + + L + F + + +C++
Sbjct: 206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID- 264
Query: 111 ELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQ 170
E L+ N + + ++ +SL+ S + + + + Q
Sbjct: 265 EFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLK-Q 321
Query: 171 FPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPS--WLFTLPLL 228
FP + +L + L ++ N+ SI L +L+ L L N LS + L
Sbjct: 322 FPTL-DLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSL 378
Query: 229 RDIDLSDNQLTGHLDAFPS-KSLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLASNNFSG 286
R +DLS N F + L+ L ++ L S F L L YL ++ N
Sbjct: 379 RHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438
Query: 287 IVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFP--SFLRSL 344
+ L +L L+++ NS T S V ++ + L LS C + F
Sbjct: 439 D-FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497
Query: 345 ELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI---PWKNLKYLKLQSN 401
L L++S NN+ + +LS LD S N I K I K+L + L +N
Sbjct: 498 RLQLLNMSHNNLLFLDSSHY--NQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNN 555
Query: 402 LL 403
+
Sbjct: 556 SV 557
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 3e-40
Identities = 80/487 (16%), Positives = 146/487 (29%), Gaps = 67/487 (13%)
Query: 97 GQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQ 156
G L I + ++ +P + + + LSF S SN +
Sbjct: 2 GSLNPCIEVVPNIT-YQCMDQKLSK-VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSE 57
Query: 157 LTDVDLGSNSFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLS 215
L +DL + L +S L ++ N + P SGL +L L L+
Sbjct: 58 LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117
Query: 216 GTIPSWLFTLPLLRDIDLSDNQLTG--HLDAFPS-KSLRKLYLTNNRLHG---------- 262
+ L L+ ++++ N + F + +L + L+ N +
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLR 177
Query: 263 -----------------SIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELS 305
I F+ L L+L N S + L L L L
Sbjct: 178 ENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLI 237
Query: 306 HNSLS-------FGTTSKVNSSFPQIFILSLSACNISA--FPSFLRSLELAYLDLSENNI 356
F + I L+ N + F ++ + L+ +I
Sbjct: 238 LGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI 297
Query: 357 DGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLP-VPPPRLQ 415
+ + L + + + + LK L L N V P L
Sbjct: 298 K-YLEDV---PKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLS 353
Query: 416 FLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQI--SWKNL 473
+L S N + S S++G +SL +L+LS N M + L
Sbjct: 354 YLDLSRNALSFSGCCS------------YSDLGTNSLRHLDLSFNGAIIMSANFMGLEEL 401
Query: 474 GYLDLRSNLLQG----PLLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLS 529
+LD + + L+ + L + I + + +L+ L ++ N
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK 461
Query: 530 GTIPKCI 536
+
Sbjct: 462 DNTLSNV 468
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 144 bits (364), Expect = 6e-37
Identities = 71/395 (17%), Positives = 131/395 (33%), Gaps = 28/395 (7%)
Query: 5 LVQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFR-LSNLQM 63
L +N L + + + + + L L+L + + L+ L +
Sbjct: 176 LRENPQVNLSLDMSLNPIDFIQDQAFQGIK--LHELTLRGNFNSSNIMKTCLQNLAGLHV 233
Query: 64 VRL---KFNSNLSGVFPRSNWTSPLR-----CLDVSGTRFSGQLPDSICNLRHLRELHLS 115
RL +F + + L ++ T L ++ + L+
Sbjct: 234 HRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA 293
Query: 116 QCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIM 175
+ + + LS+ L L L L N +
Sbjct: 294 GVSI--KYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSL---TLTMNKGS-ISFKKV 347
Query: 176 NLTRISRLDISNNQLTGSIPS--HGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDL 233
L +S LD+S N L+ S G +L L L N + + L L+ +D
Sbjct: 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDF 406
Query: 234 SDNQLTG--HLDAFPS-KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEP 290
+ L AF S + L L ++ L +L L +A N+F
Sbjct: 407 QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS 466
Query: 291 YMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFP--SFLRSLELAY 348
+ A NL L+LS L + V + ++ +L++S N+ + + L+
Sbjct: 467 NVFANTTNLTFLDLSKCQLE-QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525
Query: 349 LDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFIT 383
LD S N I+ +L+F +L++N +
Sbjct: 526 LDCSFNRIETSKGILQH--FPKSLAFFNLTNNSVA 558
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 3e-41
Identities = 123/583 (21%), Positives = 208/583 (35%), Gaps = 79/583 (13%)
Query: 7 QNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFR-LSNLQMVR 65
Q + + L L + + TV + L L L L + FR L NL+++
Sbjct: 21 QVLNTTERLLLSFNYIRTVTASSFPFLEQ-LQLLELGSQYTPLTIDKEAFRNLPNLRILD 79
Query: 66 LKFNSNLSGVFPRS-NWTSPLRCLDVSGTRFSGQL--PDSICNLRHLRELHLSQCNFYGF 122
L + + + P + L L + S + NL+ L L LS+
Sbjct: 80 LGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL 138
Query: 123 -LPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQ--LTDVDLGSNSFD-------GQFP 172
L S G + L + S L L L+ L +NS G+
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198
Query: 173 DIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDID 232
+ + LD+S N T I ++N +S + L +
Sbjct: 199 NPFRNMVLEILDVSGNGWTVDITG------------NFSNAISKSQAFSLILAHHIMGAG 246
Query: 233 LSDNQLT----GHLDAFPSKSLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLASNNFSGI 287
+ + S+R L L++ + S+ S +FE L +L L+LA N + I
Sbjct: 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKI 305
Query: 288 VEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFP----SFLRS 343
L NL L LS+N L S P++ + L +I+ FL
Sbjct: 306 -ADEAFYGLDNLQVLNLSYNLLGE-LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK 363
Query: 344 LELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLL 403
L+ LDL +N + I ++ + LS N + + +I + L N L
Sbjct: 364 LQ--TLDLRDNAL-TTIHFI------PSIPDIFLSGNKLVTLPKINL-TANLIHLSENRL 413
Query: 404 QGPLPVPP----PRLQFLLASNNQFTGEIIQSICSS-STLEI---------PSWISEIGK 449
+ + P LQ L+ + N+F+ S +LE +W +E+
Sbjct: 414 ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW 473
Query: 450 D------SLSYLNLSHNFITKMKQISWKNLG---YLDLRSNLLQG-PLLVPPSSLRVILI 499
D L L L+HN++ + + +L L L SN L P++L ++ I
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDI 533
Query: 500 LNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSPW 542
NQ + ++L VLD+++N+ + F W
Sbjct: 534 SRNQLL---APNPDVFVSLSVLDITHNKFICECE--LSTFINW 571
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 1e-34
Identities = 87/452 (19%), Positives = 161/452 (35%), Gaps = 36/452 (7%)
Query: 7 QNVTKLQLLFLDYVDMSTVVPGTLKNLSS-SLTSLSLSYCRIQGEFPENIFRLSN-LQMV 64
+ L+ + + V L+ L +L+ SL+ + + + N + +
Sbjct: 145 GKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM 204
Query: 65 RLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLP 124
L+ ++SG + WT + S S+ H+ N
Sbjct: 205 VLEIL-DVSG----NGWTVDI--TGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ 257
Query: 125 ASLGNV--TQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDI-MNLTRIS 181
+ + + + L LS L L ++L N + + L +
Sbjct: 258 NTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317
Query: 182 RLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGH 241
L++S N L S+ GL +A + L N ++ L L+ +DL DN LT
Sbjct: 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-T 376
Query: 242 LDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAA 301
+ P S+ ++L+ N+L ++P + L+ N + Y L ++ +L
Sbjct: 377 IHFIP--SIPDIFLSGNKLV-TLPKINL---TANLIHLSENRLENLDILYFLLRVPHLQI 430
Query: 302 LELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAF------PSFLRSLE-LAYLDLSEN 354
L L+ N S + + S P + L L + L L L L+ N
Sbjct: 431 LILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490
Query: 355 NIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWK-NLKYLKLQSNLLQGPLPVPPPR 413
++ +P ++ L L L+ N +T + NL+ L + N L P P
Sbjct: 491 YLN-SLPPGVFS-HLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVS 548
Query: 414 LQFLLASNNQFTGEIIQSICSSSTLEIPSWIS 445
L L ++N+F IC +W++
Sbjct: 549 LSVLDITHNKF-------ICECELSTFINWLN 573
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 5e-29
Identities = 82/411 (19%), Positives = 144/411 (35%), Gaps = 66/411 (16%)
Query: 160 VDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIP 219
+ Q P L RL +S N + S L+ L +L L + TI
Sbjct: 9 AFYRFCNLT-QVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTID 65
Query: 220 SWLFT-LPLLRDIDLSDNQLTG-HLDAF-PSKSLRKLYLTNNRL-HGSIPSSIFE-LANL 274
F LP LR +DL +++ H DAF L +L L L + F L L
Sbjct: 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125
Query: 275 TYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLS-FGTTSKVNSSFPQIFILSLSACN 333
T L L+ N + KL +L +++ S N + + SL+A +
Sbjct: 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185
Query: 334 ISAFPSF--------LRSLELAYLDLSENNIDGQIPNWMWE----------VGKDTLSFL 375
+ + S R++ L LD+S N I + +
Sbjct: 186 LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245
Query: 376 DLSHNFITEM-----KQIPWKNLKYLKLQSNLLQGPLPVPP------PRLQFLLASNNQF 424
+ I + + ++++L L + + L+ L + N+
Sbjct: 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS---LNSRVFETLKDLKVLNLAYNK- 301
Query: 425 TGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQIS---WKNLGYLDLRSN 481
I I + G D+L LNLS+N + ++ + + Y+DL+ N
Sbjct: 302 ----INKI-ADEAFY--------GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348
Query: 482 ---LLQGPLLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLS 529
++Q L+ + + +N T +I I ++ + LS N+L
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLV 394
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 1e-10
Identities = 43/237 (18%), Positives = 76/237 (32%), Gaps = 42/237 (17%)
Query: 326 ILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEM 385
I CN++ P L + E L LS N I + + + L L+L +
Sbjct: 8 IAFYRFCNLTQVPQVLNTTE--RLLLSFNYIR-TVTASSFP-FLEQLQLLELGSQYTPLT 63
Query: 386 KQ----IPWKNLKYLKLQSNLLQGPLP---VPPPRLQFLLASNNQFTGEIIQSICSSSTL 438
NL+ L L S+ + P L L + +++
Sbjct: 64 IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLK-------- 115
Query: 439 EIPSWISEIGKDSLSYLNLSHNFITKMKQ----ISWKNLGYLDLRSNLLQG-------PL 487
+ + +L+ L+LS N I + +L +D SN + PL
Sbjct: 116 --DGYFRNL--KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171
Query: 488 LVPPSSLRVILILNNQFTGEI------IHSICDIIALDVLDLSNNRLSGTIPKCIGN 538
+L + N + + + L++LD+S N + I N
Sbjct: 172 QGK--TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSN 226
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 5e-38
Identities = 86/484 (17%), Positives = 161/484 (33%), Gaps = 45/484 (9%)
Query: 85 LRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFS 144
+ LD+S S + L+ L LS+C + +++ L+ L L+
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 145 GHIPPSLSNLHQLTDVDLGSNSFDGQFPDIM-NLTRISRLDISNNQLT-GSIPSHGSGLQ 202
+ S L L + + + +L + L++++N + +P + S L
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 203 NLAVLRLYNNTLSGTIPSWLFTLPLLR----DIDLSDNQLTG-HLDAFPSKSLRKLYLTN 257
NL L L +N + + L L + +DLS N + AF L KL L N
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN 209
Query: 258 NRLHGSIPSSIFE-LANLTYLSLASNNFSGI-----VEPYMLAKLVNL--AALELSHNSL 309
N ++ + + LA L L F + L L NL L++
Sbjct: 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269
Query: 310 SFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGK 369
+ + + SL + I F + +L+L +
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKL----- 324
Query: 370 DTLSFLDLSHNFITEM-KQIPWKNLKYLKLQSNLLQGPLPVP-----PPRLQFLLASNNQ 423
+L L + N ++ +L++L L N L L++L S N
Sbjct: 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384
Query: 424 FTGEIIQSICSSSTLE-----------IPSWISEIGKDSLSYLNLSHNFITKMKQISWKN 472
+ + LE + + + +L YL++SH +
Sbjct: 385 VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443
Query: 473 LG---YLDLRSNLLQGPL----LVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSN 525
L L + N Q +L + + Q + + +L VL++++
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 526 NRLS 529
N+L
Sbjct: 504 NQLK 507
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 145 bits (367), Expect = 2e-37
Identities = 101/538 (18%), Positives = 179/538 (33%), Gaps = 63/538 (11%)
Query: 32 NLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRS--NWTSPLRCLD 89
NL S +L LS+ ++ + F LQ++ L + + + + + L L
Sbjct: 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSH-LSTLI 82
Query: 90 VSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSF-SGHIP 148
++G + L L++L + N +G++ L L+++ S +P
Sbjct: 83 LTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142
Query: 149 PSLSNLHQLTDVDLGSNSF----DGQFPDIMNLTRIS-RLDISNNQLTGSIPSHGSGLQN 203
SNL L +DL SN + + ++ LD+S N + I
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIR 201
Query: 204 LAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSDNQLTGH-----LDAFPSKSLRKLYLTN 257
L L L NN S + L L L + D + L L +
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261
Query: 258 NRL------HGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSF 311
RL I L N++ SL S + + +L +
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT 321
Query: 312 GTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDT 371
+ L+ ++ S + L +LDLS N + + + G +
Sbjct: 322 L-------KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374
Query: 372 LSFLDLSHNFITEMKQIPW--KNLKYLKLQSNLLQGPLPV----PPPRLQFLLASNNQFT 425
L +LDLS N + M + L++L Q + L+ L +L S+
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 434
Query: 426 GEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQ----ISWKNLGYLDLRSN 481
I + + SL L ++ N + +NL +LDL
Sbjct: 435 -VAFNGIFNGLS-------------SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480
Query: 482 LLQGPLLVPP------SSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIP 533
L+ + P SSL+V+ + +NQ + +L + L N + P
Sbjct: 481 QLEQ---LSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 134 bits (338), Expect = 1e-33
Identities = 100/495 (20%), Positives = 163/495 (32%), Gaps = 59/495 (11%)
Query: 7 QNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRL 66
Q+++ L L L + ++ G LSS L L + I L L+ + +
Sbjct: 73 QSLSHLSTLILTGNPIQSLALGAFSGLSS-LQKLVAVETNLASLENFPIGHLKTLKELNV 131
Query: 67 KFNSNLSGVFPRSNWTSP-LRCLDVSGTRFSGQLPDSICNLRHLRELHLS---QCNFYGF 122
N S P L LD+S + + L + L+LS N F
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191
Query: 123 LPASLGNVTQLAVLSLSFKSFSGHIPP-SLSNLHQLTDVDLGSNSFDGQFPDIMNLTRIS 181
+ +L L+L S ++ + L L L F
Sbjct: 192 IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR------------- 238
Query: 182 RLDISNNQLTGSIPSHGSGLQNLAVLRL---YNNTLSGTIPSWLFTLPLLRDIDLSDNQL 238
+ L S GL NL + Y + I L + L +
Sbjct: 239 ----NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294
Query: 239 TGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVN 298
D + + L L N + P+ +L +L L+ SN + L +
Sbjct: 295 ERVKDFSYNFGWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNA---FSEVDLPS 348
Query: 299 LAALELSHNSLSF-GTTSKVNSSFPQIFILSLSACNISAFPSFLRSLE-LAYLDLSENNI 356
L L+LS N LSF G S+ + + L LS + S LE L +LD +N+
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408
Query: 357 DGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWK---NLKYLKLQSNLLQGPLP----V 409
Q+ + + L +LD+SH + +L+ LK+ N Q
Sbjct: 409 K-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467
Query: 410 PPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQIS 469
L FL S Q ++ + S + SL LN++ N + +
Sbjct: 468 ELRNLTFLDLSQCQ-----LEQL-SPTAFN--------SLSSLQVLNMASNQLKSVPDGI 513
Query: 470 WKNLG---YLDLRSN 481
+ L + L +N
Sbjct: 514 FDRLTSLQKIWLHTN 528
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 2e-29
Identities = 74/369 (20%), Positives = 128/369 (34%), Gaps = 29/369 (7%)
Query: 15 LFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFR-LSNLQMVRLKFNSNLS 73
L L M+ + PG K + L L+L + + L+ L++ RL +
Sbjct: 182 LDLSLNPMNFIQPGAFKEIR--LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239
Query: 74 G---VFPRSNWTSPLRCLDVSGTR------FSGQLPDSICNLRHLRELHLSQCNFYGFLP 124
+ L L + R + + D L ++ L
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299
Query: 125 AS-LGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRL 183
S L +++ F F SL L SN G ++L + L
Sbjct: 300 FSYNFGWQHLELVNCKFGQFPTLKLKSLKRL------TFTSNKG-GNAFSEVDLPSLEFL 352
Query: 184 DISNNQLT--GSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG- 240
D+S N L+ G G +L L L N + T+ S L L +D + L
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQM 411
Query: 241 -HLDAFPS-KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVN 298
F S ++L L +++ + L++L L +A N+F P + +L N
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471
Query: 299 LAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFP-SFLRSLE-LAYLDLSENNI 356
L L+LS L + +S + +L++++ + + P L L + L N
Sbjct: 472 LTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530
Query: 357 DGQIPNWMW 365
D P +
Sbjct: 531 DCSCPRIDY 539
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 2e-37
Identities = 103/520 (19%), Positives = 183/520 (35%), Gaps = 77/520 (14%)
Query: 10 TKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFN 69
T LQ ++ T +P +N+ S T ++ + P + + RL+
Sbjct: 11 TFLQEPLRHSSNL-TEMPVEAENVKS-KTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC 68
Query: 70 SNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGN 129
+ L+++ S LP+ HL L S CN LP +
Sbjct: 69 LDRQ-----------AHELELNNLGLS-SLPELP---PHLESLVAS-CNSLTELPELPQS 112
Query: 130 VTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQ 189
+ L V + + K+ S +PP L L + +N + + P++ N + + +D+ NN
Sbjct: 113 LKSLLVDNNNLKALSD-LPPLLEYL------GVSNNQLE-KLPELQNSSFLKIIDVDNNS 164
Query: 190 LTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKS 249
L +P +L + NN L +P L LP L I +N L L P S
Sbjct: 165 LK-KLPD---LPPSLEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK-KLPDLPL-S 216
Query: 250 LRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSL 309
L + NN L + L LT + +N + + +L AL + N L
Sbjct: 217 LESIVAGNNIL--EELPELQNLPFLTTIYADNNLLKTLPD-----LPPSLEALNVRDNYL 269
Query: 310 SFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGK 369
+ + + L +S S +L YL+ S N I + +
Sbjct: 270 T-----DLPELPQSLTFLDVSENIFSGLSELPPNLY--YLNASSNEIR-SLCDLP----- 316
Query: 370 DTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEII 429
+L L++S+N + E+ +P L+ L N L +P P L+ L N
Sbjct: 317 PSLEELNVSNNKLIELPALP-PRLERLIASFNHLAE-VPELPQNLKQLHVEYNPLR---- 370
Query: 430 QSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLLV 489
E P S+ L ++ + + NL L + +N L+
Sbjct: 371 ---------EFPDIPE-----SVEDLRMNSHLAEVPELPQ--NLKQLHVETNPLRE-FPD 413
Query: 490 PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLS 529
P S+ + + + + + L+ ++
Sbjct: 414 IPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 7e-36
Identities = 89/449 (19%), Positives = 163/449 (36%), Gaps = 64/449 (14%)
Query: 98 QLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQL 157
++P N++ E + + + P G ++AV L Q
Sbjct: 25 EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL-----------RDCLDRQA 73
Query: 158 TDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGT 217
+++L + +L L S N LT +P L++L V LS
Sbjct: 74 HELELNNLGLSSLPELPPHLE---SLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDL 129
Query: 218 IPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYL 277
P L + +S+NQL + S L+ + + NN L +P +L ++
Sbjct: 130 PPL-------LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPD---LPPSLEFI 178
Query: 278 SLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAF 337
+ +N + E L L L A+ +NSL K+ + + +
Sbjct: 179 AAGNNQLEELPE---LQNLPFLTAIYADNNSL-----KKLPDLPLSLESIVAGNNILEEL 230
Query: 338 PSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLK 397
P L + N + +P+ +L L++ N++T++ ++P ++L +L
Sbjct: 231 PELQNLPFLTTIYADNNLL-KTLPDLP-----PSLEALNVRDNYLTDLPELP-QSLTFLD 283
Query: 398 LQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTL--------EIPSWISEIGK 449
+ N+ G L PP L +L AS+N+ + S L E+P+
Sbjct: 284 VSENIFSG-LSELPPNLYYLNASSNEIR-SLCDLPPSLEELNVSNNKLIELPALPP---- 337
Query: 450 DSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLLVPPSSLRVILILNNQFTGEII 509
L L S N + ++ + +NL L + N L+ P S+ L +N+ E+
Sbjct: 338 -RLERLIASFNHLAEVPE-LPQNLKQLHVEYNPLRE-FPDIPESVE-DLRMNSHLA-EVP 392
Query: 510 HSICDIIALDVLDLSNNRLSGTIPKCIGN 538
L L + N L P +
Sbjct: 393 ELPQ---NLKQLHVETNPLR-EFPDIPES 417
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 7e-29
Identities = 71/413 (17%), Positives = 144/413 (34%), Gaps = 56/413 (13%)
Query: 146 HIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLA 205
I P + L + S++ + N+ + + ++ + P + +A
Sbjct: 2 FINPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61
Query: 206 VLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPS--KSLRKLYLTNNRLHGS 263
V RL + +++L++ L+ + P L L + N L
Sbjct: 62 VSRLRDCLDRQ-----------AHELELNNLGLS----SLPELPPHLESLVASCNSLT-E 105
Query: 264 IPSSIFELANLTYLSLASNNFSGIVEPYM--------------LAKLVNLAALELSHNSL 309
+P L +L + S + L L +++ +NSL
Sbjct: 106 LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSL 165
Query: 310 SFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGK 369
K+ P + ++ + P L + N++ ++P+
Sbjct: 166 -----KKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK-KLPDLP----- 214
Query: 370 DTLSFLDLSHNFITEMKQIP-WKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEI 428
+L + +N + E+ ++ L + +NLL+ LP PP L+ L +N T ++
Sbjct: 215 LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLT-DL 272
Query: 429 IQSICSSSTLEIPS-WISEIGK--DSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQG 485
+ S + L++ S + + +L YLN S N I + +L L++ +N L
Sbjct: 273 PELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCD-LPPSLEELNVSNNKLIE 331
Query: 486 PLLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGN 538
L P L ++ N E+ + L L + N L P +
Sbjct: 332 -LPALPPRLERLIASFNHLA-EVPELPQN---LKQLHVEYNPLR-EFPDIPES 378
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 4e-14
Identities = 50/294 (17%), Positives = 87/294 (29%), Gaps = 49/294 (16%)
Query: 8 NVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLK 67
N+ L ++ D + L +L SL S+ + E + L L +
Sbjct: 193 NLPFLTAIYADNNSLKK-----LPDLPLSLESIVAGNNIL--EELPELQNLPFLTTIYAD 245
Query: 68 FNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASL 127
N L + + L L+V + LP+ +L L L
Sbjct: 246 NN-LLKTL---PDLPPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSG----LSELP 296
Query: 128 GNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISN 187
N+ L S +S + +L +L ++ +N L R L S
Sbjct: 297 PNLYYLNASSNEIRS----LCDLPPSLEEL---NVSNNKLIELPALPPRLER---LIASF 346
Query: 188 NQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPL----------------LRDI 231
N L +P QNL L + N L P ++ L+ +
Sbjct: 347 NHLA-EVPE---LPQNLKQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEVPELPQNLKQL 401
Query: 232 DLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFS 285
+ N L P S+ L + + R+ + L ++
Sbjct: 402 HVETNPLR-EFPDIPE-SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 46/247 (18%), Positives = 81/247 (32%), Gaps = 39/247 (15%)
Query: 6 VQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVR 65
+QN+ L ++ D + T L +L SL +L++ + + PE L+ L +
Sbjct: 233 LQNLPFLTTIYADNNLLKT-----LPDLPPSLEALNVRDNYLT-DLPELPQSLTFLDVSE 286
Query: 66 LKFNS-----------NLSGVFPRS--NWTSPLRCLDVSGTRFSGQLPDSICNLRHLREL 112
F+ N S RS + L L+VS + +LP L L
Sbjct: 287 NIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RL 342
Query: 113 HLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFP 172
S + +P N+ QL V + P ++ L ++
Sbjct: 343 IASFNHL-AEVPELPQNLKQLHVEYNPLRE----FPDIPESVEDLR----MNSHLAEVPE 393
Query: 173 DIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDID 232
NL + L + N L P +++ LR+ + + T L D
Sbjct: 394 LPQNLKQ---LHVETNPLR-EFPD---IPESVEDLRMNSERVVDPYEFAHETTDKLEDDV 446
Query: 233 LSDNQLT 239
+
Sbjct: 447 FEHHHHH 453
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 2e-36
Identities = 98/492 (19%), Positives = 184/492 (37%), Gaps = 56/492 (11%)
Query: 53 ENIFRLSNL-QMVRLKFNSN-LSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLR 110
IF + L + ++ ++ +++ + L D + L +L
Sbjct: 15 NQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQ-VTTLQADRLGIKS--IDGVEYLNNLT 71
Query: 111 ELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQ 170
+++ S P L N+T+L + ++ + L+NL LT + L +N
Sbjct: 72 QINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITD- 126
Query: 171 FPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRD 230
+ NLT ++RL++S+N ++ S SGL +L L N ++ P L L L
Sbjct: 127 IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQ-VTDLKP--LANLTTLER 181
Query: 231 IDLSDNQLTGHLDAFPS-KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVE 289
+D+S N+++ + +L L TNN++ P + L NL LSL N I
Sbjct: 182 LDISSNKVSD-ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT 238
Query: 290 PYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYL 349
LA L NL L+L++N + + S ++ L L A IS L L
Sbjct: 239 ---LASLTNLTDLDLANNQI---SNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNL 292
Query: 350 DLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI-PWKNLKYLKLQSNLLQGPLP 408
+L+EN ++ P L++L L N I+++ + L+ L +N +
Sbjct: 293 ELNENQLEDISPIS----NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSS 348
Query: 409 V-PPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGK-DSLSYLNLSHNFITKMK 466
+ + +L A +NQ + ++ + ++ L L+ T
Sbjct: 349 LANLTNINWLSAGHNQISD-----------------LTPLANLTRITQLGLNDQAWTNAP 391
Query: 467 QISWKNLGYLDLRSNLLQGPLLVPPSSLRVILIL-NNQFTGEIIHSI----CDIIALDVL 521
N+ + N+ L+ P+++ T + +
Sbjct: 392 VNYKANVSIPNTVKNVTG--ALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTI 449
Query: 522 DLSNNRLSGTIP 533
SGT+
Sbjct: 450 GKGTTTFSGTVT 461
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 7e-36
Identities = 86/444 (19%), Positives = 156/444 (35%), Gaps = 68/444 (15%)
Query: 102 SICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVD 161
+ L + L + N + ++ Q+ L + L+ LT ++
Sbjct: 19 TDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQIN 74
Query: 162 LGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSW 221
+N + NLT++ + ++NNQ+ P + L NL L L+NN ++ P
Sbjct: 75 FSNNQLTD-ITPLKNLTKLVDILMNNNQIADITPL--ANLTNLTGLTLFNNQITDIDP-- 129
Query: 222 LFTLPLLRDIDLSDNQLTGHLDAFPS-KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLA 280
L L L ++LS N ++ + A SL++L N + L L L ++
Sbjct: 130 LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDIS 185
Query: 281 SNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSF 340
SN S I LAKL NL +L ++N + + + LSL+ + +
Sbjct: 186 SNKVSDISV---LAKLTNLESLIATNNQI---SDITPLGILTNLDELSLNGNQLKDIGTL 239
Query: 341 LRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI-PWKNLKYLKLQ 399
L LDL+ N I P L+ L L N I+ + + L L+L
Sbjct: 240 ASLTNLTDLDLANNQISNLAPLSGLT----KLTELKLGANQISNISPLAGLTALTNLELN 295
Query: 400 SNLLQGPLPVP-PPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGK-DSLSYLNL 457
N L+ P+ L +L N + IS + L L
Sbjct: 296 ENQLEDISPISNLKNLTYLTLYFNNISD-----------------ISPVSSLTKLQRLFF 338
Query: 458 SHNFITKMKQIS-WKNLGYLDLRSNLLQGPLLVPPSSLRVILILNNQFTGEIIHSICDII 516
+N ++ + ++ N+ +L N + + + ++
Sbjct: 339 YNNKVSDVSSLANLTNINWLSAGHNQISD-----------------------LTPLANLT 375
Query: 517 ALDVLDLSNNRLSGTIPKCIGNFS 540
+ L L++ + N S
Sbjct: 376 RITQLGLNDQAWTNAPVNYKANVS 399
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 1e-35
Identities = 97/485 (20%), Positives = 178/485 (36%), Gaps = 67/485 (13%)
Query: 8 NVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLK 67
++ ++ L D + + ++ ++ L++ LT ++ S ++ + L+ L + +
Sbjct: 44 DLDQVTTLQADRLGIKSIDG--VEYLNN-LTQINFSNNQLTD--ITPLKNLTKLVDILMN 98
Query: 68 FNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASL 127
N ++ + P +N T+ L L + + + D + NL +L L LS ++L
Sbjct: 99 NN-QIADITPLANLTN-LTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISAL 152
Query: 128 GNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISN 187
+T L LS + L+NL L +D+ SN + LT + L +N
Sbjct: 153 SGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSD-ISVLAKLTNLESLIATN 208
Query: 188 NQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPS 247
NQ++ P L NL L L N L L +L L D+DL++NQ++
Sbjct: 209 NQISDITPL--GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGL 264
Query: 248 KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHN 307
L +L L N++ P + L LT L L N I ++ L NL L L N
Sbjct: 265 TKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFN 319
Query: 308 SLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEV 367
++ + SS ++ L +S S + +L N I P
Sbjct: 320 NI---SDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP----LA 372
Query: 368 GKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGE 427
++ L L+ T N+ N+
Sbjct: 373 NLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNV------------------------- 407
Query: 428 IIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQIS--WKNLGYLDLRSNLLQG 485
+ L P+ IS+ G S + +++ N + ++S + + + G
Sbjct: 408 -------TGALIAPATISDGG--SYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSG 458
Query: 486 PLLVP 490
+ P
Sbjct: 459 TVTQP 463
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 2e-28
Identities = 70/330 (21%), Positives = 136/330 (41%), Gaps = 24/330 (7%)
Query: 6 VQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVR 65
+ +T LQ L ++ + P L NL++ L L +S ++ + +L+NL+ +
Sbjct: 152 LSGLTSLQQLSFGN-QVTDLKP--LANLTT-LERLDISSNKVSD--ISVLAKLTNLESLI 205
Query: 66 LKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPA 125
N +S + P T+ L L ++G + ++ +L +L +L L+ P
Sbjct: 206 ATNN-QISDITPLGILTN-LDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP- 260
Query: 126 SLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDI 185
L +T+L L L S L+ L LT+++L N + I NL ++ L +
Sbjct: 261 -LSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLED-ISPISNLKNLTYLTL 316
Query: 186 SNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF 245
N ++ P S L L L YNN +S S L L + + NQ++
Sbjct: 317 YFNNISDISPV--SSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTPLA 372
Query: 246 PSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELS 305
+ +L L + + + AN++ + N ++ P ++ + +++
Sbjct: 373 NLTRITQLGLNDQAWTNAPVNY---KANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT 429
Query: 306 HNSLSFGTTSKVNSSFPQIFILSLSACNIS 335
N S+ T++V+ +F Q + S
Sbjct: 430 WNLPSY--TNEVSYTFSQPVTIGKGTTTFS 457
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 2e-26
Identities = 72/362 (19%), Positives = 131/362 (36%), Gaps = 44/362 (12%)
Query: 179 RISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQL 238
+ I+ + I + + L L ++ T+ L + + +
Sbjct: 2 PLGSATITQDTPINQIFTD-TALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI 58
Query: 239 TGHLDAFPS-KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLV 297
+D +L ++ +NN+L P + L L + + +N + I LA L
Sbjct: 59 K-SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP---LANLT 112
Query: 298 NLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNID 357
NL L L +N + T + + L LS+ IS + L L N +
Sbjct: 113 NLTGLTLFNNQI---TDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVT 168
Query: 358 GQIPNWMWEVGK-DTLSFLDLSHNFITEMKQIPW-KNLKYLKLQSNLLQGPLPVP-PPRL 414
P + TL LD+S N ++++ + NL+ L +N + P+ L
Sbjct: 169 DLKP-----LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNL 223
Query: 415 QFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGK-DSLSYLNLSHNFITKMKQIS-WKN 472
L + NQ I + +L+ L+L++N I+ + +S
Sbjct: 224 DELSLNGNQLKD-----------------IGTLASLTNLTDLDLANNQISNLAPLSGLTK 266
Query: 473 LGYLDLRSNLLQG-PLLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGT 531
L L L +N + L ++L + + NQ I I ++ L L L N +S
Sbjct: 267 LTELKLGANQISNISPLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDI 324
Query: 532 IP 533
P
Sbjct: 325 SP 326
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 1e-17
Identities = 53/283 (18%), Positives = 107/283 (37%), Gaps = 39/283 (13%)
Query: 6 VQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVR 65
+ +T L L L+ + + L +L++ LT L L+ +I + L+ L ++
Sbjct: 217 LGILTNLDELSLNGNQLKDIGT--LASLTN-LTDLDLANNQISN--LAPLSGLTKLTELK 271
Query: 66 LKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPA 125
L N +S + P + T+ L L+++ + I NL++L L L N P
Sbjct: 272 LGAN-QISNISPLAGLTA-LTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP- 326
Query: 126 SLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDI 185
+ ++T+L L S SL+NL + + G N + NLTRI++L +
Sbjct: 327 -VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISD-LTPLANLTRITQLGL 382
Query: 186 SNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF 245
++ T + ++ + + ++ L P+ + + D++ N +
Sbjct: 383 NDQAWTNAPVNYKANVSIPNTVKNVTGAL--IAPATISDGGSYTEPDITWNLPS------ 434
Query: 246 PSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIV 288
+ + + + FSG V
Sbjct: 435 -----------------YTNEVSYTFSQPVTIGKGTTTFSGTV 460
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 3e-35
Identities = 91/493 (18%), Positives = 183/493 (37%), Gaps = 44/493 (8%)
Query: 7 QNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFR-LSNLQMVR 65
+ LQ+L L ++T+ +L S L L LS + + F LS+L+ +
Sbjct: 47 RACANLQVLILKSSRINTIEGDAFYSLGS-LEHLDLSDNHLS-SLSSSWFGPLSSLKYLN 104
Query: 66 LKFNS----NLSGVFPRSNWTSPLRCLDVSGTRFSGQLP-DSICNLRHLRELHLSQCNFY 120
L N ++ +F N T+ L+ L + ++ L L EL + +
Sbjct: 105 LMGNPYQTLGVTSLF--PNLTN-LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161
Query: 121 GFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRI 180
+ SL ++ + L+L + + L + ++L + + + +
Sbjct: 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEV 221
Query: 181 SRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG 240
S + GS+ + S + L +LR TL L D + S++ +
Sbjct: 222 SS-PMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD--CTLNGLGDFNPSESDVVS 278
Query: 241 HLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLA 300
L + ++R+L++ L + + L + +++ ++ + L +L
Sbjct: 279 ELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV-PCSFSQHLKSLE 337
Query: 301 ALELSHNSLSFGT--TSKVNSSFPQIFILSLSACNISAFP----SFLRSLELAYLDLSEN 354
L+LS N + S ++P + L LS ++ + L L LD+S N
Sbjct: 338 FLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN 397
Query: 355 NIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRL 414
+ W + + FL+LS I +K + L+ L + +N L + PRL
Sbjct: 398 TFHPMPDSCQW---PEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDS-FSLFLPRL 453
Query: 415 QFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQ---ISWK 471
Q L S N+ ++++ +S L + +S N + +
Sbjct: 454 QELYISRNK-----LKTLPDASLF-----------PVLLVMKISRNQLKSVPDGIFDRLT 497
Query: 472 NLGYLDLRSNLLQ 484
+L + L +N
Sbjct: 498 SLQKIWLHTNPWD 510
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 136 bits (343), Expect = 2e-34
Identities = 78/470 (16%), Positives = 165/470 (35%), Gaps = 36/470 (7%)
Query: 85 LRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFS 144
++ LD+S + + + +L+ L L + ++ L L LS S
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87
Query: 145 GHIPPSLSNLHQLTDVDLGSNSFD--GQFPDIMNLTRISRLDISNNQLTGSIPSHG-SGL 201
L L ++L N + G NLT + L I N + I +GL
Sbjct: 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147
Query: 202 QNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPS--KSLRKLYLTNNR 259
+L L + +L L ++ + + L ++ L+ F S+R L L +
Sbjct: 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207
Query: 260 LHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNS 319
L S + + + + S + + +L+ L L + + F +
Sbjct: 208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF-NELLKLLRYILELSEVEF-----DDC 261
Query: 320 SFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSH 379
+ + + S ++ + + ++ + L + + + + + K + + + +
Sbjct: 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK--VKRITVEN 319
Query: 380 NFITEMKQIPW---KNLKYLKLQSNLLQGPLPVPP------PRLQFLLASNNQFT--GEI 428
+ + + K+L++L L NL+ P LQ L+ S N +
Sbjct: 320 SKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKT 379
Query: 429 IQSICSSSTLEI----PSWISEIGKD-----SLSYLNLSHNFITKMKQISWKNLGYLDLR 479
+ + + L + + + +LNLS I +K + L LD+
Sbjct: 380 GEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVS 439
Query: 480 SNLLQGPLLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLS 529
+N L + L+ + I N+ + L V+ +S N+L
Sbjct: 440 NNNLDS-FSLFLPRLQELYISRNKLK--TLPDASLFPVLLVMKISRNQLK 486
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 2e-23
Identities = 62/384 (16%), Positives = 129/384 (33%), Gaps = 31/384 (8%)
Query: 183 LDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG-H 241
D + T SIPS + L L N ++ L L+ + L +++
Sbjct: 10 CDGRSRSFT-SIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIE 66
Query: 242 LDAFPS-KSLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLASNNFSGIVEPYMLAKLVNL 299
DAF S SL L L++N L S+ SS F L++L YL+L N + + + L NL
Sbjct: 67 GDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125
Query: 300 AALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFP--SFLRSLELAYLDLSENNID 357
L + + + + L + A ++ + S ++ +L L +
Sbjct: 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185
Query: 358 GQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPW---KNLKYLKLQSNLLQGPLPVPPPRL 414
+ + + + +L+L + + P + +K + L
Sbjct: 186 FLLEIFADILSS--VRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243
Query: 415 QFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKD-------SLSYLNLSHNFITKMKQ 467
LL + + + + S++ + ++ L++ ++
Sbjct: 244 LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS 303
Query: 468 ISWKNLG---YLDLRSNLLQ---GPLLVPPSSLRVILILNNQFTGEIIHS---ICDIIAL 518
+ L + + ++ + SL + + N E + + +L
Sbjct: 304 TVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL 363
Query: 519 DVLDLSNNRLSGTIPKCIGNFSPW 542
L LS N L ++ K
Sbjct: 364 QTLVLSQNHLR-SMQKTGEILLTL 386
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 85.2 bits (211), Expect = 1e-17
Identities = 54/276 (19%), Positives = 94/276 (34%), Gaps = 21/276 (7%)
Query: 3 EALVQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQ 62
E + T L + + V + + L + + + L ++
Sbjct: 255 EVEFDDCTLNGLGDFNPSESDVVSELGKVETVT-IRRLHIPQFYLFYDLSTVYSLLEKVK 313
Query: 63 MVRLKFN--SNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDS---ICNLRHLRELHLSQC 117
+ ++ + + F + L LD+S + + L+ L LSQ
Sbjct: 314 RITVENSKVFLVPCSFSQHL--KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371
Query: 118 NFY--GFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIM 175
+ L + L L +S +F +P S ++ ++L S I
Sbjct: 372 HLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCI- 429
Query: 176 NLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSD 235
+ LD+SNN L S L L L + N L T+P P+L + +S
Sbjct: 430 -PQTLEVLDVSNNNLD-SFSLF---LPRLQELYISRNKLK-TLPDASL-FPVLLVMKISR 482
Query: 236 NQLTG-HLDAFPS-KSLRKLYLTNNRLHGSIPSSIF 269
NQL F SL+K++L N S P +
Sbjct: 483 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 518
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 1e-14
Identities = 47/232 (20%), Positives = 81/232 (34%), Gaps = 21/232 (9%)
Query: 7 QNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPEN---IFRLSNLQM 63
+ K++ + ++ + V ++L S L L LS + E+ +N +LQ
Sbjct: 307 SLLEKVKRITVENSKVFLVPCSFSQHLKS-LEFLDLSENLMVEEYLKNSACKGAWPSLQT 365
Query: 64 VRLKFN-----SNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCN 118
+ L N + + L LD+S F +PDS +R L+LS
Sbjct: 366 LVLSQNHLRSMQKTGEIL--LTLKN-LTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTG 421
Query: 119 FYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLT 178
+ L V + + SFS L +L ++ + N PD
Sbjct: 422 IRVVKTCIPQTLEVLDVSNNNLDSFS-------LFLPRLQELYISRNKLK-TLPDASLFP 473
Query: 179 RISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRD 230
+ + IS NQL L +L + L+ N + P + L
Sbjct: 474 VLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 525
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 34/223 (15%), Positives = 76/223 (34%), Gaps = 31/223 (13%)
Query: 322 PQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNF 381
+ + + ++ PS L + + LDLS N I + L L L +
Sbjct: 5 DASGVCDGRSRSFTSIPSGL-TAAMKSLDLSFNKITYIGHGDLRACAN--LQVLILKSSR 61
Query: 382 ITEMKQ---IPWKNLKYLKLQSNLLQGPLPV----PPPRLQFLLASNNQFTGEIIQSICS 434
I ++ +L++L L N L L P L++L N + + S+
Sbjct: 62 INTIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120
Query: 435 SSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISW----KNLGYLDLRSNLLQG---PL 487
+ T +L L + + + +L L++++ L+
Sbjct: 121 NLT-------------NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS 167
Query: 488 LVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSG 530
L + + + ++ + + ++ L+L + L+
Sbjct: 168 LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 5e-35
Identities = 70/391 (17%), Positives = 127/391 (32%), Gaps = 56/391 (14%)
Query: 85 LRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFS 144
L + PD+ +L L + + + + + L ++ + +
Sbjct: 2 AATLATLPAPINQIFPDA--DLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57
Query: 145 GHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNL 204
+ L L ++L N + NL +++ L I N++T S L NL
Sbjct: 58 S--IQGIEYLTNLEYLNLNGNQITD-ISPLSNLVKLTNLYIGTNKIT--DISALQNLTNL 112
Query: 205 AVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPS-KSLRKLYLTNNRLHGS 263
L L + +S P L L + ++L N L + L L +T +++
Sbjct: 113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV 170
Query: 264 IPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQ 323
P I L +L LSL N I LA L +L N + T ++ +
Sbjct: 171 TP--IANLTDLYSLSLNYNQIEDISP---LASLTSLHYFTAYVNQI---TDITPVANMTR 222
Query: 324 IFILSLSACNISAFPSFLRSLELAYLDLSENNID-----GQIPNWMWEVGKDTLSFLDLS 378
+ L + I+ +L +L++ N I + L L++
Sbjct: 223 LNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTK---------LKMLNVG 273
Query: 379 HNFITEMKQI-PWKNLKYLKLQSNLLQGPLPVPP---PRLQFLLASNNQFTGEIIQSICS 434
N I+++ + L L L +N L L L S N T
Sbjct: 274 SNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD-------- 325
Query: 435 SSTLEIPSWISEIGK-DSLSYLNLSHNFITK 464
I + + + ++ I K
Sbjct: 326 ---------IRPLASLSKMDSADFANQVIKK 347
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 131 bits (332), Expect = 3e-34
Identities = 79/350 (22%), Positives = 150/350 (42%), Gaps = 25/350 (7%)
Query: 8 NVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLK 67
++ + L ++ VV + L S +T L ++ ++ + I L+NL+ + L
Sbjct: 20 DLAEGIRAVLQKASVTDVVT--QEELES-ITKLVVAGEKVAS--IQGIEYLTNLEYLNLN 74
Query: 68 FNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASL 127
N ++ + P SN L L + + + ++ NL +LREL+L++ N P L
Sbjct: 75 GN-QITDISPLSNLVK-LTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISDISP--L 128
Query: 128 GNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISN 187
N+T++ L+L + P LSN+ L + + + I NLT + L ++
Sbjct: 129 ANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKD-VTPIANLTDLYSLSLNY 186
Query: 188 NQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPS 247
NQ+ P + L +L Y N ++ P + + L + + +N++T L +
Sbjct: 187 NQIEDISPL--ASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSPLAN 241
Query: 248 -KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSH 306
L L + N++ S +++ +L L L++ SN S I L L L +L L++
Sbjct: 242 LSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQISDISV---LNNLSQLNSLFLNN 296
Query: 307 NSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNI 356
N L +V + L LS +I+ ++ D + I
Sbjct: 297 NQLG-NEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVI 345
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 5e-33
Identities = 74/383 (19%), Positives = 141/383 (36%), Gaps = 48/383 (12%)
Query: 157 LTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSG 216
+ + FPD +L R + +T + L+++ L + ++
Sbjct: 2 AATLATLPAPINQIFPD-ADLAEGIRAVLQKASVTDVVTQ--EELESITKLVVAGEKVA- 57
Query: 217 TIPSWLFTLPLLRDIDLSDNQLTGHLDAFPS-KSLRKLYLTNNRLHGSIPSSIFELANLT 275
+I + L L ++L+ NQ+T + + L LY+ N++ + S++ L NL
Sbjct: 58 SIQG-IEYLTNLEYLNLNGNQITD-ISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLR 113
Query: 276 YLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNIS 335
L L +N S I LA L + +L L N + S+ + L+++ +
Sbjct: 114 ELYLNEDNISDISP---LANLTKMYSLNLGANHNL--SDLSPLSNMTGLNYLTVTESKVK 168
Query: 336 AFPSF--LRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPW-KN 392
L L L L+ N I+ P +L + N IT++ +
Sbjct: 169 DVTPIANLTDLY--SLSLNYNQIEDISPLA----SLTSLHYFTAYVNQITDITPVANMTR 222
Query: 393 LKYLKLQSNLLQGPLPVPP-PRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGK-D 450
L LK+ +N + P+ +L +L NQ + I+ +
Sbjct: 223 LNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISD-----------------INAVKDLT 265
Query: 451 SLSYLNLSHNFITKMKQIS-WKNLGYLDLRSNLLQGPLLVPPS---SLRVILILNNQFTG 506
L LN+ N I+ + ++ L L L +N L + +L + + N T
Sbjct: 266 KLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325
Query: 507 EIIHSICDIIALDVLDLSNNRLS 529
I + + +D D +N +
Sbjct: 326 --IRPLASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 7e-33
Identities = 73/306 (23%), Positives = 136/306 (44%), Gaps = 22/306 (7%)
Query: 6 VQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVR 65
++ +T L+ L L+ ++ + P L NL LT+L + +I + L+NL+ +
Sbjct: 62 IEYLTNLEYLNLNGNQITDISP--LSNLVK-LTNLYIGTNKITD--ISALQNLTNLRELY 116
Query: 66 LKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPA 125
L + N+S + P +N T + L++ + N+ L L +++ P
Sbjct: 117 LNED-NISDISPLANLTK-MYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP- 172
Query: 126 SLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDI 185
+ N+T L LSL++ P L++L L N + N+TR++ L I
Sbjct: 173 -IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD-ITPVANMTRLNSLKI 228
Query: 186 SNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF 245
NN++T P + L L L + N +S + + L L+ +++ NQ++ +
Sbjct: 229 GNNKITDLSPL--ANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISD-ISVL 283
Query: 246 PS-KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALEL 304
+ L L+L NN+L I L NLT L L+ N+ + I LA L + + +
Sbjct: 284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP---LASLSKMDSADF 340
Query: 305 SHNSLS 310
++ +
Sbjct: 341 ANQVIK 346
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 8e-31
Identities = 66/433 (15%), Positives = 132/433 (30%), Gaps = 43/433 (9%)
Query: 85 LRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFS 144
+ V+ + L + +++EL LS A L T+L +L+LS
Sbjct: 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71
Query: 145 GHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNL 204
L +L L +DL +N +++ I L +NN ++ S G G +N
Sbjct: 72 E--TLDLESLSTLRTLDLNNN----YVQELLVGPSIETLHAANNNISRVSCSRGQGKKN- 124
Query: 205 AVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG-HLDAFPS--KSLRKLYLTNNRLH 261
+ L NN ++ ++ +DL N++ + + +L L L N ++
Sbjct: 125 --IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182
Query: 262 GSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSF 321
+ + A L L L+SN + + + + L +N L K
Sbjct: 183 -DVKGQVV-FAKLKTLDLSSNKLAFM--GPEFQSAAGVTWISLRNNKLV--LIEKALRFS 236
Query: 322 PQIFILSLSACNISAFP---SFLRSLELAYLDLSENNI----DGQIPNWMWEVGKDTLSF 374
+ L F ++ + + + +
Sbjct: 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCC 296
Query: 375 LDLSHNFITEMKQIPWKNLKYLKLQSNLLQG--PLPVPPPRLQFLLASNNQFTGEIIQSI 432
DL F + + K L Q + + R + + A Q+
Sbjct: 297 EDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR------- 349
Query: 433 CSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLGYLD--LRSNLLQGPLLVP 490
+ ++ K + L + + + LD L+ + Q L
Sbjct: 350 ------TVIDQVTL-RKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHA 402
Query: 491 PSSLRVILILNNQ 503
+ +L
Sbjct: 403 TEEQSPLQLLRAI 415
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 7e-30
Identities = 64/382 (16%), Positives = 125/382 (32%), Gaps = 40/382 (10%)
Query: 174 IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDL 233
N R ++++ L ++ S N+ L L N LS + L L ++L
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 234 SDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGI------ 287
S N L LD +LR L L NN + + ++ L A+NN S +
Sbjct: 66 SSNVLYETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRVSCSRGQ 120
Query: 288 --------------VEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACN 333
+ + L+L N + +++ +S + L+L
Sbjct: 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180
Query: 334 ISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI--PWK 391
I + +L LDLS N + + ++++ L +N + +++ +
Sbjct: 181 IYDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAG--VTWISLRNNKLVLIEKALRFSQ 237
Query: 392 NLKYLKLQSNLLQ-GPLPVPPPRLQFLLA-SNNQFTGEIIQSICSSSTLEIPSWISEIGK 449
NL++ L+ N G L + Q + + Q+ + +
Sbjct: 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH------Y 291
Query: 450 DSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQG--PLLVPPSSLRVILILNNQFTGE 507
+ +L F ++ + K L + + + + R I L Q+
Sbjct: 292 GAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTV 351
Query: 508 IIHSICDIIALDVLDLSNNRLS 529
I A L+ L
Sbjct: 352 IDQVTLRKQAKITLEQKKKALD 373
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 5e-29
Identities = 57/408 (13%), Positives = 121/408 (29%), Gaps = 47/408 (11%)
Query: 5 LVQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMV 64
+ QN + ++ + + + ++ + + L LS + ++ + L+++
Sbjct: 5 IKQNGNRYKIEKVTDSSLKQALASLRQSAWN-VKELDLSGNPLSQISAADLAPFTKLELL 63
Query: 65 RLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLP 124
L N L + +L LR L L+
Sbjct: 64 NLSSN-VLYETLD-------------------------LESLSTLRTLDLNNNYV----- 92
Query: 125 ASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDG-QFPDIMNLTRISRL 183
L + L + + S + L +N + D +R+ L
Sbjct: 93 QELLVGPSIETLHAANNNISRVSCSRGQGKKNI---YLANNKITMLRDLDEGCRSRVQYL 149
Query: 184 DISNNQLTG-SIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHL 242
D+ N++ + + L L L N + + + L+ +DLS N+L
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLAFMG 207
Query: 243 DAFPS-KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAA 301
F S + + L NN+L I ++ NL + L N F +K +
Sbjct: 208 PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266
Query: 302 LELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIP 361
+ G + + P + C P R + L + + + G
Sbjct: 267 VAKQTVKKLTGQNEE-ECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSET 325
Query: 362 NWM--WEVGKDTLSFLDLSHNFITEMKQ---IPWKNLKYLKLQSNLLQ 404
+ + +D + + + L+ + L
Sbjct: 326 ERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALD 373
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 75.7 bits (186), Expect = 1e-14
Identities = 41/323 (12%), Positives = 81/323 (25%), Gaps = 37/323 (11%)
Query: 7 QNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRL 66
+++Q L L ++ TV L S +L L+L Y I + + + L+ + L
Sbjct: 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDL 198
Query: 67 KFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPAS 126
N L+ + + + + L + +
Sbjct: 199 SSN-KLA------------------------FMGPEFQSAAGVTWISLRNNKL-VLIEKA 232
Query: 127 LGNVTQLAVLSLSFKSFS-GHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDI 185
L L L F G + S ++ V + + T +
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK-KLTGQNEEECTVPTLGHY 291
Query: 186 SNNQLTGSIPSHGSGLQNLAVLRLYNNTLSG----TIPSWLFTLPLLRDIDLSDNQLTG- 240
L L + G + R+ID Q
Sbjct: 292 GAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTV 351
Query: 241 HLDAF-PSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPY-MLAKLVN 298
++ L L + + A L + + + L
Sbjct: 352 IDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQL 411
Query: 299 LAALELSHNSLSFGTTSKVNSSF 321
L A+ + + S N++
Sbjct: 412 LRAIVKRYEEMYVEQQSVQNNAI 434
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 9e-05
Identities = 30/153 (19%), Positives = 53/153 (34%), Gaps = 23/153 (15%)
Query: 392 NLKYLKLQSNLLQGPLP---VPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIG 448
K K+ + L+ L ++ L S N + + + LE
Sbjct: 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE--------- 61
Query: 449 KDSLSYLNLSHNFITKMKQIS-WKNLGYLDLRSNLLQGPLLVPPSSLRVILILNNQFTGE 507
LNLS N + + + L LDL +N +Q L+ S+ + NN +
Sbjct: 62 -----LLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE--LLVGPSIETLHAANNNIS-R 113
Query: 508 IIHSICDIIALDVLDLSNNRLSGTIPKCIGNFS 540
+ S + L+NN+++ G S
Sbjct: 114 VSCSRGQ--GKKNIYLANNKITMLRDLDEGCRS 144
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 2e-30
Identities = 68/314 (21%), Positives = 121/314 (38%), Gaps = 43/314 (13%)
Query: 7 QNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFR-LSNLQMVR 65
+ L+ L L+ +S V PG NL +L +L L R++ P +F LSNL +
Sbjct: 53 ASFPHLEELELNENIVSAVEPGAFNNL-FNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLD 110
Query: 66 LKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPA 125
+ N + L +L +L+ L + +
Sbjct: 111 ISENK--------------IVILL----------DYMFQDLYNLKSLEVGDNDLVYISHR 146
Query: 126 SLGNVTQLAVLSLSFKSFSGHIPP-SLSNLHQLTDVDLGSNSF----DGQFPDIMNLTRI 180
+ + L L+L + + IP +LS+LH L + L + D F L R+
Sbjct: 147 AFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFK---RLYRL 202
Query: 181 SRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSDNQLT 239
L+IS+ ++ + NL L + + L+ +P L LR ++LS N ++
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS 261
Query: 240 G-HLDAFPS-KSLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLASNNFSGIVEPYMLAKL 296
L+++ L +L + F L L L+++ N + + E + +
Sbjct: 262 TIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTL-EESVFHSV 319
Query: 297 VNLAALELSHNSLS 310
NL L L N L+
Sbjct: 320 GNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 8e-29
Identities = 66/339 (19%), Positives = 113/339 (33%), Gaps = 28/339 (8%)
Query: 24 TVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFR-LSNLQMVRLKFNSNLSGVFPRS-NW 81
VP + + + L L RI+ ++ F +L+ + L N +S V P + N
Sbjct: 24 VAVP---EGIPTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNEN-IVSAVEPGAFNN 78
Query: 82 TSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFK 141
LR L + R L +L +L +S+ L ++ L L +
Sbjct: 79 LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN 138
Query: 142 SFSGHIPP-SLSNLHQLTDVDLGSNSF----DGQFPDIMNLTRISRLDISNNQLTGSIPS 196
+I + S L+ L + L + +L + L + + +
Sbjct: 139 DLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALS---HLHGLIVLRLRHLNINAIRDY 194
Query: 197 HGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG-HLDAFPS-KSLRKLY 254
L L VL + + T+ L + ++ LT A LR L
Sbjct: 195 SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLN 254
Query: 255 LTNNRLHGSIPSSIFE-LANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGT 313
L+ N + +I S+ L L + L + + EPY L L L +S N L+
Sbjct: 255 LSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVV-EPYAFRGLNYLRVLNVSGNQLTT-L 311
Query: 314 TSKVNSSFPQIFILSLSA------CNISAFPSFLRSLEL 346
V S + L L + C + L
Sbjct: 312 EESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNF 350
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 1e-22
Identities = 77/366 (21%), Positives = 140/366 (38%), Gaps = 82/366 (22%)
Query: 183 LDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG-H 241
+ + ++P +L L N + + P L +++L++N ++
Sbjct: 16 VLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE 72
Query: 242 LDAFPS-KSLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLASNNFSGIVEPYMLAKLVNL 299
AF + +LR L L +NRL IP +F L+NLT L ++ N + YM L NL
Sbjct: 73 PGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVIL-LDYMFQDLYNL 130
Query: 300 AALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQ 359
+LE+ N L +S AF S L SLE L L + N+
Sbjct: 131 KSLEVGDNDLV-----------------YISH---RAF-SGLNSLE--QLTLEKCNLTSI 167
Query: 360 IPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLA 419
+ + L L L H I ++ +K L RL+ L
Sbjct: 168 PTEALSHLHG--LIVLRLRHLNINAIRDYSFKRL------------------YRLKVLEI 207
Query: 420 SNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLG---YL 476
S+ + + + L L+++H +T + ++ ++L +L
Sbjct: 208 SHWPYLDTMTPNCLYGLNLT--------------SLSITHCNLTAVPYLAVRHLVYLRFL 253
Query: 477 DLRSNL---LQGPLLVPPSSLRVILILNNQFTGEIIHSI-----CDIIALDVLDLSNNRL 528
+L N ++G +L L+ I ++ Q + + + L VL++S N+L
Sbjct: 254 NLSYNPISTIEGSMLHELLRLQEIQLVGGQ-----LAVVEPYAFRGLNYLRVLNVSGNQL 308
Query: 529 SGTIPK 534
+ T+ +
Sbjct: 309 T-TLEE 313
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 2e-12
Identities = 57/309 (18%), Positives = 97/309 (31%), Gaps = 86/309 (27%)
Query: 229 RDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLASNNFSGI 287
R + + + P+ R L L NR+ ++ F +L L L N S +
Sbjct: 14 RAVLCHRKRFVAVPEGIPT-ETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAV 71
Query: 288 VEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELA 347
EP L NL L L N L + F L +L
Sbjct: 72 -EPGAFNNLFNLRTLGLRSNRLK-----------------LIPL---GVFTG-LSNLT-- 107
Query: 348 YLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQ---IPWKNLKYLKLQSNLLQ 404
LD+SEN I + ++M++ L L++ N + + +L+ L L+ L
Sbjct: 108 KLDISENKI-VILLDYMFQ-DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT 165
Query: 405 GPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITK 464
+P L L L L L H I
Sbjct: 166 S---IPTEALSHL--------------------------------HGLIVLRLRHLNINA 190
Query: 465 MKQISWKNLGYLDLRSNLLQGPLLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLS 524
++ S+K L L+V+ I + + + + + L L ++
Sbjct: 191 IRDYSFKRL------------------YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT 232
Query: 525 NNRLSGTIP 533
+ L+ +P
Sbjct: 233 HCNLT-AVP 240
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 7e-30
Identities = 79/416 (18%), Positives = 143/416 (34%), Gaps = 67/416 (16%)
Query: 99 LPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPS-LSNLHQL 157
+ ++ ++H+ + + +++ + +P + L + Q+
Sbjct: 13 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 71
Query: 158 TDVDLGSNSF----DGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNT 213
++L F I +L + N + P + L VL L N
Sbjct: 72 ELLNLNDLQIEEIDTYAFA---YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 128
Query: 214 LSGTIPSWLFT-LPLLRDIDLSDNQLTG-HLDAFPS-KSLRKLYLTNNRLHGSIPSSIFE 270
LS ++P +F P L + +S+N L D F + SL+ L L++NRL + S+
Sbjct: 129 LS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLI- 185
Query: 271 LANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLS 330
+L + +++ N S LA + + L+ SHNS+ ++ IL L
Sbjct: 186 -PSLFHANVSYNLLS------TLAIPIAVEELDASHNSI----NVVRGPVNVELTILKLQ 234
Query: 331 ACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI-- 388
N++ L L +DLS N ++ +I + L L +S+N + +
Sbjct: 235 HNNLTDTAWLLNYPGLVEVDLSYNELE-KIMYHPFV-KMQRLERLYISNNRLVALNLYGQ 292
Query: 389 PWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIG 448
P LK L L N L + +
Sbjct: 293 PIPTLKVLDLSHNHLL----------------------------------HVERNQPQF- 317
Query: 449 KDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQG-PLLVPPSSLRVILILNNQ 503
D L L L HN I +K + L L L N L ++ + +
Sbjct: 318 -DRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDAD 372
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 4e-28
Identities = 72/361 (19%), Positives = 131/361 (36%), Gaps = 26/361 (7%)
Query: 8 NVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFR-LSNLQMVRL 66
+ +++ M + L + + L+L+ +I+ E F +Q + +
Sbjct: 43 TLNNQKIVTFKNSTMRKLPAALLDSF-RQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYM 100
Query: 67 KFNSNLSGVFPRSNWTSP-LRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPA 125
FN + + P P L L + S N L L +S N
Sbjct: 101 GFN-AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD 159
Query: 126 SLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDI 185
+ T L L LS + H+ S + L ++ N + + LD
Sbjct: 160 TFQATTSLQNLQLSSNRLT-HVDL--SLIPSLFHANVSYN----LLSTLAIPIAVEELDA 212
Query: 186 SNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG-HLDA 244
S+N + + L +L+L +N L T +WL P L ++DLS N+L
Sbjct: 213 SHNSIN-VVRGP--VNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHP 267
Query: 245 FPS-KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALE 303
F + L +LY++NNRL ++ + L L L+ N+ + + L L
Sbjct: 268 FVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHV--ERNQPQFDRLENLY 324
Query: 304 LSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNW 363
L HNS+ + S+ + L+LS + +A + + + +I
Sbjct: 325 LDHNSI----VTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQ 380
Query: 364 M 364
+
Sbjct: 381 L 381
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 9e-28
Identities = 73/367 (19%), Positives = 131/367 (35%), Gaps = 40/367 (10%)
Query: 173 DIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFT-LPLLRDI 231
++ + I L N ++ N+T+ +P+ L + +
Sbjct: 16 NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELL 74
Query: 232 DLSDNQLTG-HLDAFPS-KSLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLASNNFSGIV 288
+L+D Q+ AF +++KLY+ N + +P +F+ + LT L L N+ S +
Sbjct: 75 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSL- 132
Query: 289 EPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFP-SFLRSLELA 347
+ L L +S+N+L + + L LS+ ++ S + SL
Sbjct: 133 PRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF-- 189
Query: 348 YLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQG-P 406
+ ++S N + + + + LD SHN I ++ L LKLQ N L
Sbjct: 190 HANVSYNLLS-TLAIPI------AVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA 242
Query: 407 LPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMK 466
+ P L + S N+ +I+ L L +S+N + +
Sbjct: 243 WLLNYPGLVEVDLSYNELE-KIMYHPFVKMQ-------------RLERLYISNNRLVALN 288
Query: 467 QI--SWKNLGYLDLRSNLLQG--PLLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLD 522
L LDL N L L + + +N + S L L
Sbjct: 289 LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV-TLKLSTHH--TLKNLT 345
Query: 523 LSNNRLS 529
LS+N
Sbjct: 346 LSHNDWD 352
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 3e-27
Identities = 69/372 (18%), Positives = 133/372 (35%), Gaps = 44/372 (11%)
Query: 36 SLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRS-NWTSPLRCLDVSGTR 94
+ + F L+N ++V K + + + + + L+++ +
Sbjct: 22 VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQ 80
Query: 95 FSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSL-SN 153
+ +++L++ P NV L VL L S +P + N
Sbjct: 81 IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHN 139
Query: 154 LHQLTDVDLGSNSFDGQFPDI-MNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNN 212
+LT + + +N+ + D T + L +S+N+LT + S + +L + N
Sbjct: 140 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL--SLIPSLFHANVSYN 196
Query: 213 TLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELA 272
LS L + ++D S N + + + L L L +N L + + +
Sbjct: 197 LLST-----LAIPIAVEELDASHNSIN-VVRGPVNVELTILKLQHNNL--TDTAWLLNYP 248
Query: 273 NLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSAC 332
L + L+ N I + K+ L L +S+N L
Sbjct: 249 GLVEVDLSYNELEKI-MYHPFVKMQRLERLYISNNRLV---------------------- 285
Query: 333 NISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKN 392
++ + + +L+ LDLS N++ + + + L L L HN I +K
Sbjct: 286 ALNLYGQPIPTLK--VLDLSHNHLL-HVERNQPQFDR--LENLYLDHNSIVTLKLSTHHT 340
Query: 393 LKYLKLQSNLLQ 404
LK L L N
Sbjct: 341 LKNLTLSHNDWD 352
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 98.6 bits (246), Expect = 2e-22
Identities = 65/282 (23%), Positives = 117/282 (41%), Gaps = 24/282 (8%)
Query: 7 QNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFR-LSNLQMVR 65
QNV L +L L+ D+S++ G N LT+LS+S ++ ++ F+ ++LQ ++
Sbjct: 114 QNVPLLTVLVLERNDLSSLPRGIFHNT-PKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQ 171
Query: 66 LKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPA 125
L N L+ S S L +VS S ++ + EL S +
Sbjct: 172 LSSN-RLT-HVDLSLIPS-LFHANVSYNLLS-----TLAIPIAVEELDASHNSINVVRGP 223
Query: 126 SLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDI-MNLTRISRLD 184
+L +L L + + L N L +VDL N + + + R+ RL
Sbjct: 224 VN---VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278
Query: 185 ISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG-HLD 243
ISNN+L ++ +G + L VL L +N L + L ++ L N + L
Sbjct: 279 ISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLS 336
Query: 244 AFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFS 285
+L+ L L++N + ++F N+ ++ +
Sbjct: 337 THH--TLKNLTLSHNDWDCNSLRALF--RNVARPAVDDADQH 374
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 92.8 bits (231), Expect = 1e-20
Identities = 58/351 (16%), Positives = 118/351 (33%), Gaps = 45/351 (12%)
Query: 193 SIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG-HLDAFPS-KSL 250
I S+ + + T TL + + ++ + S + +
Sbjct: 12 CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71
Query: 251 RKLYLTNNRLHGSIPSSIFE-LANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSL 309
L L + ++ I + F + L + N + P++ + L L L N L
Sbjct: 72 ELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDL 129
Query: 310 SFGTTSKVNSSFPQIFILSLSACNISAFPS--FLRSLELAYLDLSENNI----DGQIPNW 363
S + + P++ LS+S N+ F + L L LS N + IP+
Sbjct: 130 SS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS- 187
Query: 364 MWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQ 423
L ++S+N ++ + ++ L N + L L +N
Sbjct: 188 --------LFHANVSYNLLSTLAIPI--AVEELDASHNSINVVRGPVNVELTILKLQHNN 237
Query: 424 FTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISW---KNLGYLDLRS 480
T + + L ++LS+N + K+ + + L L + +
Sbjct: 238 LT-------------DTAWL---LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281
Query: 481 NLLQG--PLLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLS 529
N L P +L+V+ + +N + + L+ L L +N +
Sbjct: 282 NRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 2e-16
Identities = 49/265 (18%), Positives = 95/265 (35%), Gaps = 20/265 (7%)
Query: 7 QNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRL 66
N KL L + ++ + T + +S L +L LS R+ ++ +L +
Sbjct: 138 HNTPKLTTLSMSNNNLERIEDDTFQATTS-LQNLQLSSNRLT-HVDLSLI--PSLFHANV 193
Query: 67 KFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPAS 126
+N LS + + LD S + + + L L L N A
Sbjct: 194 SYN-LLSTLAIPIA----VEELDASHNSIN-VVRGPV--NVELTILKLQHNNLTD--TAW 243
Query: 127 LGNVTQLAVLSLSFKSFSGHIPP-SLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDI 185
L N L + LS+ I + +L + + +N + + LD+
Sbjct: 244 LLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDL 302
Query: 186 SNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF 245
S+N L + + L L L +N++ T+ L T L+++ LS N +
Sbjct: 303 SHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRA 358
Query: 246 PSKSLRKLYLTNNRLHGSIPSSIFE 270
+++ + + + H I +
Sbjct: 359 LFRNVARPAVDDADQHCKIDYQLEH 383
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 5e-29
Identities = 59/286 (20%), Positives = 93/286 (32%), Gaps = 39/286 (13%)
Query: 8 NVTKLQLLFLDYVDMSTVVPGTLKNLSS-SLTSLSLSYCRIQGEFPENIFRLSNLQMVRL 66
N Q+ + L++ + +L L + +FP+ FRLS+LQ + +
Sbjct: 54 NSNNPQIETRTGRALKAT-ADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTI 111
Query: 67 KFNSNLSGVFPRS--NWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLP 124
+ P + + L L ++ LP SI +L LREL + C LP
Sbjct: 112 DAAGLME--LPDTMQQFAG-LETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELP 167
Query: 125 ASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD-IMNLTRISRL 183
L + L L + L P I NL + L
Sbjct: 168 EPLASTD---------------ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSL 211
Query: 184 DISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSD-NQLT--- 239
I N+ L+ ++ L L L L T P L+ + L D + L
Sbjct: 212 KIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270
Query: 240 ---GHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASN 282
L L KL L +PS I +L + + +
Sbjct: 271 LDIHRL-----TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 6e-27
Identities = 53/314 (16%), Positives = 109/314 (34%), Gaps = 47/314 (14%)
Query: 34 SSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSN------------- 80
SS +L + + + + + +N
Sbjct: 11 SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKA 70
Query: 81 --------WTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQ 132
L++ Q PD L HL+ + + LP ++
Sbjct: 71 TADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL-MELPDTMQQFAG 128
Query: 133 LAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD----------IMNLTRISR 182
L L+L+ +P S+++L++L ++ + + + P+ L +
Sbjct: 129 LETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187
Query: 183 LDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHL 242
L + + S+P+ + LQNL L++ N+ LS + + LP L ++DL L
Sbjct: 188 LRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCT---AL 242
Query: 243 DAFPS-----KSLRKLYLTN-NRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKL 296
+P L++L L + + L ++P I L L L L + P ++A+L
Sbjct: 243 RNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRL-PSLIAQL 300
Query: 297 VNLAALELSHNSLS 310
+ + + +
Sbjct: 301 PANCIILVPPHLQA 314
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 2e-24
Identities = 59/326 (18%), Positives = 113/326 (34%), Gaps = 44/326 (13%)
Query: 85 LRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFS 144
L G+ D + + ++ + N + + + ++
Sbjct: 14 RENLYFQGSTALRPYHDVLSQWQRHYNADRNRWH----SAWRQANSNNPQIETRTGRALK 69
Query: 145 GHIPPSLSNLHQ--LTDVDLGSNSFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGL 201
L + Q ++L S QFPD L+ + + I L +P
Sbjct: 70 -ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQF 126
Query: 202 QNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSD-NQLT------GHLDAFPS----KSL 250
L L L N L +P+ + +L LR++ + +LT DA +L
Sbjct: 127 AGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL 185
Query: 251 RKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLS 310
+ L L + S+P+SI L NL L + ++ S + + L L L+L +
Sbjct: 186 QSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL--GPAIHHLPKLEELDLRGCTAL 242
Query: 311 FGTTSKVNSSFPQIF-------ILSLSACN-ISAFPSFLRSLE-LAYLDLSENNIDGQIP 361
++P IF L L C+ + P + L L LDL ++P
Sbjct: 243 --------RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
Query: 362 NWMWEVGKDTLSFLDLSHNFITEMKQ 387
+ + ++ + + + ++ Q
Sbjct: 295 SLIAQLPA--NCIILVPPHLQAQLDQ 318
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 1e-23
Identities = 49/262 (18%), Positives = 93/262 (35%), Gaps = 25/262 (9%)
Query: 3 EALVQNVTKLQLLFLDYVDMS----TVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRL 58
+A + +++ P LS L +++ + E P+ + +
Sbjct: 69 KATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSH-LQHMTIDAAGLM-ELPDTMQQF 126
Query: 59 SNLQMVRLKFNSNLSGVFPRS--NWTSPLRCLDVSGTRFSGQLPDSICN---------LR 107
+ L+ L N P S + LR L + +LP+ + + L
Sbjct: 127 AGLE--TLTLARNPLRALPASIASLNR-LRELSIRACPELTELPEPLASTDASGEHQGLV 183
Query: 108 HLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSF 167
+L+ L L LPAS+ N+ L L + S + P++ +L +L ++DL +
Sbjct: 184 NLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTA 241
Query: 168 DGQFPD-IMNLTRISRLDISN-NQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTL 225
+P + RL + + + L ++P L L L L +PS + L
Sbjct: 242 LRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
Query: 226 PLLRDIDLSDNQLTGHLDAFPS 247
P I + + P
Sbjct: 301 PANCIILVPPHLQAQLDQHRPV 322
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 3e-22
Identities = 50/335 (14%), Positives = 99/335 (29%), Gaps = 51/335 (15%)
Query: 97 GQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQ 156
G + L+ L + + H +N +
Sbjct: 2 GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW----HSAWRQANSNN 57
Query: 157 LTDVDLGSNSFDGQFPDIMNLTRIS--RLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTL 214
+ + + T+ L++ + L P L +L + + L
Sbjct: 58 PQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL 116
Query: 215 SGTIPSWLFTLPLLRDIDLSDNQLT------GHLDAFPSKSLRKLYLTNNRLHGSIPSSI 268
+P + L + L+ N L L LR+L + +P +
Sbjct: 117 M-ELPDTMQQFAGLETLTLARNPLRALPASIASL-----NRLRELSIRACPELTELPEPL 170
Query: 269 ---------FELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNS 319
L NL L L + P +A L NL +L++ ++ L S +
Sbjct: 171 ASTDASGEHQGLVNLQSLRLEWTGIRSL--PASIANLQNLKSLKIRNSPL-----SALGP 223
Query: 320 SF---PQIFILSLSACN-ISAFPSFLRSLE-LAYLDLSENNIDGQIPNWMWEVGK-DTLS 373
+ P++ L L C + +P L L L + + +P ++ + L
Sbjct: 224 AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL---DIHRLTQLE 280
Query: 374 FLDLSHNFITEMKQIP-----WKNLKYLKLQSNLL 403
LDL + ++P + + +L
Sbjct: 281 KLDLRGC--VNLSRLPSLIAQLPANCIILVPPHLQ 313
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 5e-14
Identities = 46/319 (14%), Positives = 97/319 (30%), Gaps = 57/319 (17%)
Query: 247 SKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSH 306
S LY + + + + + + A N +
Sbjct: 11 SSGRENLYFQGSTALRPYHDVLSQWQRHYNA-----DRNRWHSAWRQANSNNPQIETRTG 65
Query: 307 NSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLE-LAYLDLSENNIDGQIPNWMW 365
+L +++ P L L + + FP L L ++ + + ++P+ M
Sbjct: 66 RALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ 124
Query: 366 EVGKDTLSFLDLSHNFITEMKQIP-----WKNLKYLKLQS------------NLLQGPLP 408
+ L L L+ N + +P L+ L +++ +
Sbjct: 125 QFAG--LETLTLARNPLRA---LPASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179
Query: 409 VPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQ 467
LQ L +P+ I+ + +L L + ++ ++ +
Sbjct: 180 QGLVNLQSLRLEWTGIR-------------SLPASIANL--QNLKSLKIRNSPLSALGPA 224
Query: 468 IS-WKNLGYLDLRS-NLLQGPLLVPPS-----SLRVILILN-NQFTGEIIHSICDIIALD 519
I L LDLR L+ PP L+ +++ + + + I + L+
Sbjct: 225 IHHLPKLEELDLRGCTALRN---YPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLE 280
Query: 520 VLDLSNNRLSGTIPKCIGN 538
LDL +P I
Sbjct: 281 KLDLRGCVNLSRLPSLIAQ 299
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 18/168 (10%), Positives = 46/168 (27%), Gaps = 23/168 (13%)
Query: 391 KNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTL-----------E 439
+ L Q + P + Q ++ +S+
Sbjct: 12 SGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW-HSAWRQANSNNPQIETRTGRALKA 70
Query: 440 IPSWISEIGKDSLSYLNLSHNFITKM-KQI-SWKNLGYLDLRSNLLQGPLLVPPS----- 492
+ + + L L + + Q +L ++ + + L +P +
Sbjct: 71 TADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLME---LPDTMQQFA 127
Query: 493 SLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFS 540
L + + N + SI + L L + +P+ + +
Sbjct: 128 GLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTD 174
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 3e-28
Identities = 79/416 (18%), Positives = 143/416 (34%), Gaps = 67/416 (16%)
Query: 99 LPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPS-LSNLHQL 157
+ ++ ++H+ + + +++ + +P + L + Q+
Sbjct: 19 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQV 77
Query: 158 TDVDLGSNSF----DGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNT 213
++L F I +L + N + P + L VL L N
Sbjct: 78 ELLNLNDLQIEEIDTYAFA---YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 134
Query: 214 LSGTIPSWLFT-LPLLRDIDLSDNQLTG-HLDAFPS-KSLRKLYLTNNRLHGSIPSSIFE 270
LS ++P +F P L + +S+N L D F + SL+ L L++NRL + S+
Sbjct: 135 LS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIP 192
Query: 271 LANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLS 330
+L + +++ N S LA + + L+ SHNS+ ++ IL L
Sbjct: 193 --SLFHANVSYNLLS------TLAIPIAVEELDASHNSI----NVVRGPVNVELTILKLQ 240
Query: 331 ACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI-- 388
N++ L L +DLS N ++ +I + L L +S+N + +
Sbjct: 241 HNNLTDTAWLLNYPGLVEVDLSYNELE-KIMYHPFV-KMQRLERLYISNNRLVALNLYGQ 298
Query: 389 PWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIG 448
P LK L L N L + +
Sbjct: 299 PIPTLKVLDLSHNHLL----------------------------------HVERNQPQF- 323
Query: 449 KDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQG-PLLVPPSSLRVILILNNQ 503
D L L L HN I +K + L L L N L ++ + +
Sbjct: 324 -DRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDAD 378
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 114 bits (286), Expect = 6e-27
Identities = 82/461 (17%), Positives = 161/461 (34%), Gaps = 30/461 (6%)
Query: 32 NLSSSLTSLSLSYCRIQGEFPENI--FRLSNLQMVRLKFNSNLSGVFPRS-NWTSPLRCL 88
NL + + L+N ++V K NS + + + + L
Sbjct: 22 NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFK-NSTMRKLPAALLDSFRQVELL 80
Query: 89 DVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIP 148
+++ + + +++L++ P NV L VL L S +P
Sbjct: 81 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLP 139
Query: 149 PSL-SNLHQLTDVDLGSNSFDGQFPDI-MNLTRISRLDISNNQLTGSIPSHGSGLQNLAV 206
+ N +LT + + +N+ + D T + L +S+N+LT + S + +L
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDL--SLIPSLFH 196
Query: 207 LRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPS 266
+ N L S L + ++D S N + + + L L L +N L + +
Sbjct: 197 ANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPVNVELTILKLQHNNL--TDTA 248
Query: 267 SIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFI 326
+ L + L+ N I + K+ L L +S+N L + P + +
Sbjct: 249 WLLNYPGLVEVDLSYNELEKI-MYHPFVKMQRLERLYISNNRLV--ALNLYGQPIPTLKV 305
Query: 327 LSLSACNISAFPSFLRSLE-LAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEM 385
L LS ++ + L L L N+I + TL L LSHN
Sbjct: 306 LDLSHNHLLHVERNQPQFDRLENLYLDHNSI-VTLKLSTHH----TLKNLTLSHNDWDCN 360
Query: 386 KQIPW-KNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWI 444
+N+ + + S+ + ++Q I +S +E
Sbjct: 361 SLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRA 420
Query: 445 SE--IGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLL 483
D+++ + ++IT+ + + L+ N L
Sbjct: 421 QGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNEL 461
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 2e-26
Identities = 73/367 (19%), Positives = 131/367 (35%), Gaps = 40/367 (10%)
Query: 173 DIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFT-LPLLRDI 231
++ + I L N ++ N+T+ +P+ L + +
Sbjct: 22 NLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELL 80
Query: 232 DLSDNQLTG-HLDAFPS-KSLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLASNNFSGIV 288
+L+D Q+ AF +++KLY+ N + +P +F+ + LT L L N+ S +
Sbjct: 81 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSL- 138
Query: 289 EPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFP-SFLRSLELA 347
+ L L +S+N+L + + L LS+ ++ S + SL
Sbjct: 139 PRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLF-- 195
Query: 348 YLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQG-P 406
+ ++S N + + + + LD SHN I ++ L LKLQ N L
Sbjct: 196 HANVSYNLLS-TLAIPI------AVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA 248
Query: 407 LPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMK 466
+ P L + S N+ +I+ L L +S+N + +
Sbjct: 249 WLLNYPGLVEVDLSYNELE-KIMYHPFVKMQ-------------RLERLYISNNRLVALN 294
Query: 467 QI--SWKNLGYLDLRSNLLQG--PLLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLD 522
L LDL N L L + + +N + S L L
Sbjct: 295 LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV-TLKLSTHH--TLKNLT 351
Query: 523 LSNNRLS 529
LS+N
Sbjct: 352 LSHNDWD 358
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 4e-24
Identities = 75/418 (17%), Positives = 154/418 (36%), Gaps = 49/418 (11%)
Query: 7 QNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFR-LSNLQMVR 65
+ +++LL L+ + + + ++ L + + I+ P ++F+ + L ++
Sbjct: 72 DSFRQVELLNLNDLQIEEIDTYAFAYA-HTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLV 129
Query: 66 LKFN--SNLS-GVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGF 122
L+ N S+L G+F T L L +S D+ L+ L LS
Sbjct: 130 LERNDLSSLPRGIFHN---TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186
Query: 123 LPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLH---------------QLTDVDLGSNSF 167
+ + ++ V + + P ++ L +LT + L N+
Sbjct: 187 DLSLIPSLFHANVSYNLLSTLAI--PIAVEELDASHNSINVVRGPVNVELTILKLQHNNL 244
Query: 168 DGQFPDIMNLTRISRLDISNNQLTGSIPSHG-SGLQNLAVLRLYNNTLSGTIPSWLFTLP 226
++N + +D+S N+L I H +Q L L + NN L + + +P
Sbjct: 245 T-DTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIP 301
Query: 227 LLRDIDLSDNQLTG-HLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFS 285
L+ +DLS N L + L LYL +N + ++ S L L+L+ N++
Sbjct: 302 TLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV-TLKLSTHH--TLKNLTLSHNDWD 358
Query: 286 GIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLE 345
+ A N+A + ++ L + L+ +
Sbjct: 359 CN---SLRALFRNVARPAVDDADQHCKIDYQLEHG------LCCKESDKPYLDRLLQYIA 409
Query: 346 LAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLL 403
L + G+ DT++ + ++IT+ +P + + L+ + N L
Sbjct: 410 LTSVVEKVQRAQGRCS------ATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNEL 461
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 93.1 bits (231), Expect = 4e-20
Identities = 57/359 (15%), Positives = 117/359 (32%), Gaps = 45/359 (12%)
Query: 185 ISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG-HLD 243
I S+ + + T TL + + ++ +
Sbjct: 10 KPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAA 69
Query: 244 AFPS-KSLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLASNNFSGIVEPYMLAKLVNLAA 301
S + + L L + ++ I + F + L + N + P++ + L
Sbjct: 70 LLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTV 127
Query: 302 LELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPS--FLRSLELAYLDLSENNI--- 356
L L N LS + + P++ LS+S N+ F + L L LS N +
Sbjct: 128 LVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186
Query: 357 -DGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQ 415
IP+ L ++S+N ++ + ++ L N + L
Sbjct: 187 DLSLIPS---------LFHANVSYNLLSTLAIPI--AVEELDASHNSINVVRGPVNVELT 235
Query: 416 FLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLG- 474
L +N T + + L ++LS+N + K+ + +
Sbjct: 236 ILKLQHNNLT-------------DTAWL---LNYPGLVEVDLSYNELEKIMYHPFVKMQR 279
Query: 475 --YLDLRSNLLQG--PLLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLS 529
L + +N L P +L+V+ + +N + + L+ L L +N +
Sbjct: 280 LERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 337
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 70.0 bits (171), Expect = 8e-13
Identities = 65/406 (16%), Positives = 121/406 (29%), Gaps = 29/406 (7%)
Query: 7 QNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRL 66
Q T LQ L L ++ V + +L ++SY + + ++ +
Sbjct: 168 QATTSLQNLQLSSNRLTHVDLSLIPSL----FHANVSYNLLS-----TLAIPIAVEELDA 218
Query: 67 KFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPAS 126
N +++ V N L L + + + N L E+ LS +
Sbjct: 219 SHN-SINVVRGPVN--VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHP 273
Query: 127 LGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDIS 186
+ +L L +S + + L +DL N + R+ L +
Sbjct: 274 FVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLD 332
Query: 187 NNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFT---LPLLRDIDLSDNQLTGHLD 243
+N + ++ S L L L +N LF P + D D
Sbjct: 333 HNSIV-TLKL--STHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEH 389
Query: 244 AFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASN------NFSGIVEPYMLAKLV 297
K K YL + ++ S + ++ A++ + S + L
Sbjct: 390 GLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQ 449
Query: 298 NLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPS--FLRSLELAYLDLSENN 355
LE N L N Q +L I L LA + N
Sbjct: 450 GNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNK 509
Query: 356 IDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSN 401
+ + ++T + + E + + +N+ K N
Sbjct: 510 VFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDN 555
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 2e-27
Identities = 65/292 (22%), Positives = 111/292 (38%), Gaps = 35/292 (11%)
Query: 131 TQLAVLSLSFKSFSGHIPP-SLSNLHQLTDVDLGSNSF----DGQFPDIMNLTRISRLDI 185
A+L L + I NL L + L +N G F L ++ RL +
Sbjct: 52 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFA---PLVKLERLYL 107
Query: 186 SNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSDNQLTGHL-- 242
S NQL +P + L LR++ N ++ + +F L + ++L N L
Sbjct: 108 SKNQLK-ELPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIE 163
Query: 243 -DAF-PSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLA 300
AF K L + + + + +IP + +LT L L N + + + L L NLA
Sbjct: 164 NGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKV-DAASLKGLNNLA 219
Query: 301 ALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLE-LAYLDLSENNI--- 356
L LS NS+S + ++ P + L L+ + P L + + + L NNI
Sbjct: 220 KLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAI 278
Query: 357 -DGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPW------KNLKYLKLQSN 401
+ K + S + L N + +I ++L +
Sbjct: 279 GSNDFCPPGYNTKKASYSGVSLFSNPVQ-YWEIQPSTFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 3e-25
Identities = 67/299 (22%), Positives = 125/299 (41%), Gaps = 28/299 (9%)
Query: 24 TVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIF-RLSNLQMVRLKFNSNLSGVFPR--SN 80
VP K+L L L +I E + F L NL + L N +S + P +
Sbjct: 44 EKVP---KDLPPDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINN-KISKISPGAFAP 98
Query: 81 WTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSF 140
L L +S + +LP+ + + L+EL + + + + Q+ V+ L
Sbjct: 99 LVK-LERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT 154
Query: 141 KSF-SGHIPP-SLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHG 198
S I + + +L+ + + + P + ++ L + N++T + +
Sbjct: 155 NPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL-PPSLTELHLDGNKIT-KVDAAS 211
Query: 199 -SGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPS-KSLRKLYLT 256
GL NLA L L N++S L P LR++ L++N+L K ++ +YL
Sbjct: 212 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH 271
Query: 257 NNRLHGSIPSSIF-------ELANLTYLSLASNNFSGI-VEPYMLAKLVNLAALELSHN 307
NN + +I S+ F + A+ + +SL SN ++P + AA++L +
Sbjct: 272 NNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 6e-23
Identities = 67/358 (18%), Positives = 124/358 (34%), Gaps = 76/358 (21%)
Query: 183 LDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG-H 241
+ S+ L +P + A+L L NN ++ L L + L +N+++
Sbjct: 36 VQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS 92
Query: 242 LDAFPS-KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLA 300
AF L +LYL+ N+L +P + L L + N + + + L +
Sbjct: 93 PGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKV-RKSVFNGLNQMI 148
Query: 301 ALELSHNSL-SFGTTSKVNSSFPQIFILSLSACNISAFPSFL-RSLELAYLDLSENNIDG 358
+EL N L S G + ++ + ++ NI+ P L SL L L N I
Sbjct: 149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT--ELHLDGNKIT- 205
Query: 359 QIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLL 418
++ + G + L+ L LS N I+ + N P L+ L
Sbjct: 206 KVDAASLK-GLNNLAKLGLSFNSISAVDNGSLANT------------------PHLRELH 246
Query: 419 ASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITK---------MKQIS 469
+NN+ ++P +++ + + L +N I+
Sbjct: 247 LNNNKLV-------------KVPGGLADHK--YIQVVYLHNNNISAIGSNDFCPPGYNTK 291
Query: 470 WKNLGYLDLRSNLLQGPLLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNR 527
+ + L SN +Q + PS+ R + + L N +
Sbjct: 292 KASYSGVSLFSNPVQ-YWEIQPSTFR------------------CVYVRAAVQLGNYK 330
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 7e-19
Identities = 52/292 (17%), Positives = 104/292 (35%), Gaps = 75/292 (25%)
Query: 7 QNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFR-LSNLQMVR 65
+ KL+ L+L + + K L L + I + +++F L+ + +V
Sbjct: 97 APLVKLERLYLSKNQLKELPEKMPKT----LQELRVHENEIT-KVRKSVFNGLNQMIVVE 151
Query: 66 LKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPA 125
L N PL+ + F G ++ L + ++ N
Sbjct: 152 LGTN--------------PLKSSGIENGAFQG--------MKKLSYIRIADTN------- 182
Query: 126 SLGNVTQLAVLSLSFKSFSGHIPPSLSNLH----QLTDVDLGSNSFDGQFPDIMNLTRIS 181
+ +PPSL+ LH ++T VD + S G L ++
Sbjct: 183 --------------ITTIPQGLPPSLTELHLDGNKITKVD--AASLKG-------LNNLA 219
Query: 182 RLDISNNQLTGSIPSHG-SGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG 240
+L +S N ++ ++ + + +L L L NN L +P L ++ + L +N ++
Sbjct: 220 KLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 277
Query: 241 -HLDAFPS-------KSLRKLYLTNNRL-HGSIPSSIFE-LANLTYLSLASN 282
+ F S + L +N + + I S F + + L +
Sbjct: 278 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 4e-11
Identities = 59/291 (20%), Positives = 101/291 (34%), Gaps = 72/291 (24%)
Query: 249 SLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNS 308
LR + ++ L +P + + L L +N + I + L NL L L +N
Sbjct: 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNK 87
Query: 309 LSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVG 368
+S +S AF L LE L LS+N + ++P M
Sbjct: 88 IS-----------------KISP---GAFAP-LVKLE--RLYLSKNQLK-ELPEKMP--- 120
Query: 369 KDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEI 428
TL L + N IT K++ ++ G ++ + N
Sbjct: 121 -KTLQELRVHENEIT-------------KVRKSVFNGL-----NQMIVVELGTNPLKSSG 161
Query: 429 IQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLL 488
I + + G LSY+ ++ IT + Q +L L L N +
Sbjct: 162 I----ENGAFQ--------GMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITK--- 206
Query: 489 VPP------SSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIP 533
V ++L + + N + S+ + L L L+NN+L +P
Sbjct: 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVP 256
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 4e-27
Identities = 52/351 (14%), Positives = 111/351 (31%), Gaps = 42/351 (11%)
Query: 5 LVQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMV 64
+ QN + ++ + + + ++ + + L LS + ++ + L+++
Sbjct: 5 IKQNGNRYKIEKVTDSSLKQALASLRQSAWN-VKELDLSGNPLSQISAADLAPFTKLELL 63
Query: 65 RLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLP 124
L N L + ++ LR LD++ + + LH +
Sbjct: 64 NLSSN-VLYETLDLESLST-LRTLDLNNNYVQ-----ELLVGPSIETLHAAN-------- 108
Query: 125 ASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDG-QFPDIMNLTRISRL 183
++ +S + L +N + D +R+ L
Sbjct: 109 ------NNISRVS----------CSRGQGKKNI---YLANNKITMLRDLDEGCRSRVQYL 149
Query: 184 DISNNQLTG-SIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHL 242
D+ N++ + + L L L N + + + L+ +DLS N+L
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLAFMG 207
Query: 243 DAFPS-KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAA 301
F S + + L NN+L I ++ NL + L N F +K +
Sbjct: 208 PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266
Query: 302 LELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLS 352
+ G + + P + C P R + L +
Sbjct: 267 VAKQTVKKLTGQNEE-ECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 4e-27
Identities = 47/277 (16%), Positives = 93/277 (33%), Gaps = 21/277 (7%)
Query: 85 LRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFS 144
+ V+ + L + +++EL LS A L T+L +L+LS
Sbjct: 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLY 71
Query: 145 GHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNL 204
L +L L +DL +N +++ I L +NN ++ + S Q
Sbjct: 72 E--TLDLESLSTLRTLDLNNN----YVQELLVGPSIETLHAANNNIS-RVSC--SRGQGK 122
Query: 205 AVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG-HLDAFPS--KSLRKLYLTNNRLH 261
+ L NN ++ ++ +DL N++ + + +L L L N ++
Sbjct: 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182
Query: 262 GSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSF 321
+ + A L L L+SN + + + + L +N L K
Sbjct: 183 -DVKGQVV-FAKLKTLDLSSNKLAFM--GPEFQSAAGVTWISLRNNKLV--LIEKALRFS 236
Query: 322 PQIFILSLSACNISAFP---SFLRSLELAYLDLSENN 355
+ L F ++ + +
Sbjct: 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 5e-27
Identities = 49/320 (15%), Positives = 105/320 (32%), Gaps = 39/320 (12%)
Query: 99 LPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLT 158
+ + N + ++ + L + + + L LS S L+ +L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 159 DVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTI 218
++L SN + D+ +L+ + LD++NN +
Sbjct: 62 LLNLSSNVLY-ETLDLESLSTLRTLDLNNNYVQE-------------------------- 94
Query: 219 PSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLS 278
L P + + ++N ++ + + + +YL NN++ + + YL
Sbjct: 95 ---LLVGPSIETLHAANNNIS-RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150
Query: 279 LASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFP 338
L N + + A L L L +N + K F ++ L LS+ ++
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFI---YDVKGQVVFAKLKTLDLSSNKLAFMG 207
Query: 339 SFLRSLE-LAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLK 397
+S + ++ L N + I + L DL N + K +
Sbjct: 208 PEFQSAAGVTWISLRNNKLV-LIEKALRFS--QNLEHFDLRGNGFHCGTLRDF-FSKNQR 263
Query: 398 LQSNLLQGPLPVPPPRLQFL 417
+Q+ Q + +
Sbjct: 264 VQTVAKQTVKKLTGQNEEEC 283
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 9e-19
Identities = 54/276 (19%), Positives = 103/276 (37%), Gaps = 35/276 (12%)
Query: 263 SIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFP 322
+I + ++ + N+ L+LS N LS ++ + F
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQA-LASLRQSAWNVKELDLSGNPLS-QISAADLAPFT 58
Query: 323 QIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFI 382
++ +L+LS+ + L LDL+ N + ++ ++ L ++N I
Sbjct: 59 KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYV-QELLVGP------SIETLHAANNNI 111
Query: 383 TEMKQIPWKNLKYLKLQSNLLQGPLPVPP------PRLQFLLASNNQFTGEIIQSICSSS 436
+ + + K + L +N + + R+Q+L N+
Sbjct: 112 SRVSCSRGQGKKNIYLANNKITM---LRDLDEGCRSRVQYLDLKLNEID----------- 157
Query: 437 TLEIPSWISEIGKDSLSYLNLSHNFITKM-KQISWKNLGYLDLRSNLLQ--GPLLVPPSS 493
T+ + D+L +LNL +NFI + Q+ + L LDL SN L GP +
Sbjct: 158 TVNFAELAASS--DTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAG 215
Query: 494 LRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLS 529
+ I + NN+ I ++ L+ DL N
Sbjct: 216 VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 7e-05
Identities = 30/154 (19%), Positives = 53/154 (34%), Gaps = 23/154 (14%)
Query: 391 KNLKYLKLQSNLLQGPLP---VPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEI 447
K K+ + L+ L ++ L S N + + + LE
Sbjct: 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE-------- 61
Query: 448 GKDSLSYLNLSHNFITKMKQIS-WKNLGYLDLRSNLLQGPLLVPPSSLRVILILNNQFTG 506
LNLS N + + + L LDL +N +Q L+ S+ + NN +
Sbjct: 62 ------LLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ--ELLVGPSIETLHAANNNIS- 112
Query: 507 EIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFS 540
+ S + L+NN+++ G S
Sbjct: 113 RVSCSRG--QGKKNIYLANNKITMLRDLDEGCRS 144
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 4e-27
Identities = 72/374 (19%), Positives = 133/374 (35%), Gaps = 52/374 (13%)
Query: 154 LHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNT 213
+ +++G + PD + I+ L I +N LT S+P+ L L + N
Sbjct: 39 NNGNAVLNVGESGL-TTLPDCL-PAHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQ 92
Query: 214 LSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELAN 273
L+ ++P L L L L KL++ N+L S+P
Sbjct: 93 LT-SLPVLPPGLLELSIFSNPLTHLPALPS-----GLCKLWIFGNQLT-SLPV---LPPG 142
Query: 274 LTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACN 333
L LS++ N + + P + ++L L +N L+ + + LS+S
Sbjct: 143 LQELSVSDNQLASL--PALPSELCKL---WAYNNQLT-----SLPMLPSGLQELSVSDNQ 192
Query: 334 ISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNL 393
+++ P+ L L N + +P L L +S N +T + +P L
Sbjct: 193 LASLPTLPSELY--KLWAYNNRLT-SLPALP-----SGLKELIVSGNRLTSLPVLP-SEL 243
Query: 394 KYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLS 453
K L + N L LP+ P L L NQ T +P + + S +
Sbjct: 244 KELMVSGNRLTS-LPMLPSGLLSLSVYRNQLT-------------RLPESLIHL--SSET 287
Query: 454 YLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLLVPPSSLRVILILNNQFTGEII-HSI 512
+NL N +++ + + + S + + S+ R L+ ++
Sbjct: 288 TVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPARE 347
Query: 513 CDIIALDVLDLSNN 526
+ D +
Sbjct: 348 GEPAPADRWHMFGQ 361
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 114 bits (286), Expect = 6e-27
Identities = 71/347 (20%), Positives = 119/347 (34%), Gaps = 50/347 (14%)
Query: 201 LQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRL 260
AVL + + L+ T+P L + + + DN LT L A P + LR L ++ N+L
Sbjct: 39 NNGNAVLNVGESGLT-TLPDCLPAH--ITTLVIPDNNLT-SLPALPPE-LRTLEVSGNQL 93
Query: 261 HGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSS 320
S+P L L+ S + + L L + N L+ +
Sbjct: 94 T-SLPVLPPGLLELSIFSNPLTHLPAL--------PSGLCKLWIFGNQLT-----SLPVL 139
Query: 321 FPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHN 380
P + LS+S +++ P+ L L N + +P L L +S N
Sbjct: 140 PPGLQELSVSDNQLASLPALPSELC--KLWAYNNQLT-SLPMLP-----SGLQELSVSDN 191
Query: 381 FITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEI 440
+ + +P L L +N L LP P L+ L+ S N+ T +
Sbjct: 192 QLASLPTLP-SELYKLWAYNNRLT-SLPALPSGLKELIVSGNRLT-------------SL 236
Query: 441 PSWISEIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQG--PLLVPPSSLRVIL 498
P S L L +S N +T + L L + N L L+ SS +
Sbjct: 237 PVLPS-----ELKELMVSGNRLTSLPM-LPSGLLSLSVYRNQLTRLPESLIHLSSETTVN 290
Query: 499 ILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSPWCQT 545
+ N + + ++ +I + R
Sbjct: 291 LEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLA 337
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 9e-26
Identities = 72/297 (24%), Positives = 120/297 (40%), Gaps = 56/297 (18%)
Query: 33 LSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNS--NLSGVFPRSNWTSPLRCLDV 90
L++ L++ + P+ + +++ + + N+ +L + P LR L+V
Sbjct: 38 LNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPALPPE------LRTLEV 88
Query: 91 SGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPS 150
SG + + LP L L + LPA + +L + S +P
Sbjct: 89 SGNQLT-SLPVLPPGLLELSIFSNPLTH----LPALPSGLCKLWIFGNQLTS----LPVL 139
Query: 151 LSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAV---- 206
L +L + N L +L NNQLT S+P SGLQ L+V
Sbjct: 140 PPGLQEL---SVSDNQLASLPALPSELC---KLWAYNNQLT-SLPMLPSGLQELSVSDNQ 192
Query: 207 -------------LRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKL 253
L YNN L+ ++P+ L+++ +S N+LT L PS L++L
Sbjct: 193 LASLPTLPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLT-SLPVLPS-ELKEL 246
Query: 254 YLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLS 310
++ NRL S+P + L LS+ N + + P L L + + L N LS
Sbjct: 247 MVSGNRL-TSLPM---LPSGLLSLSVYRNQLTRL--PESLIHLSSETTVNLEGNPLS 297
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 97.7 bits (243), Expect = 2e-21
Identities = 55/308 (17%), Positives = 92/308 (29%), Gaps = 37/308 (12%)
Query: 4 ALVQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQM 63
L + +L + L L S L L + ++ P L L +
Sbjct: 98 VLPPGLLELSIFSNPLTH--------LPALPSGLCKLWIFGNQLT-SLPVLPPGLQELSV 148
Query: 64 VRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFL 123
+ S P S L L + + LP L+ EL +S L
Sbjct: 149 SDNQLAS-----LP--ALPSELCKLWAYNNQLT-SLPMLPSGLQ---ELSVSDNQL-ASL 196
Query: 124 PASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRL 183
P + +L + S +P S L +L + N L L
Sbjct: 197 PTLPSELYKLWAYNNRLTS----LPALPSGLKEL---IVSGNRLTSLPVLPSELKE---L 246
Query: 184 DISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLD 243
+S N+LT S+P L L +Y N L+ +P L L ++L N L+
Sbjct: 247 MVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS-ERT 300
Query: 244 AFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALE 303
+ + + + + L LA+ ++ A
Sbjct: 301 LQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFG 360
Query: 304 LSHNSLSF 311
N+ +F
Sbjct: 361 QEDNADAF 368
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 6e-25
Identities = 57/235 (24%), Positives = 95/235 (40%), Gaps = 12/235 (5%)
Query: 85 LRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCN--FYGFLPASLGNVTQLAVLSLSFKS 142
L++ + L L +L LS F G S T L L LSF
Sbjct: 30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89
Query: 143 FSGHIPPSLSNLHQLTDVDLGSNSFD--GQFPDIMNLTRISRLDISNNQLTGSIPSHG-S 199
+ + L QL +D ++ +F ++L + LDIS+ + +
Sbjct: 90 VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFN 147
Query: 200 GLQNLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSDNQLTG-HLDAFPS-KSLRKLYLT 256
GL +L VL++ N+ +FT L L +DLS QL AF S SL+ L ++
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207
Query: 257 NNRLHGSIPSSIFE-LANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLS 310
+N S+ + ++ L +L L + N+ + + +LA L L+ N +
Sbjct: 208 HNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 92.8 bits (231), Expect = 6e-21
Identities = 66/294 (22%), Positives = 111/294 (37%), Gaps = 59/294 (20%)
Query: 181 SRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSDNQLT 239
+ + ++ LT S+P+ + L L +N L ++P +F L L + LS N L+
Sbjct: 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLS 65
Query: 240 ----GHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAK 295
F + SL+ L L+ N + ++ S+ L L +L +N + E +
Sbjct: 66 FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 124
Query: 296 LVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENN 355
L NL L++SH +F IF + L SLE L ++ N+
Sbjct: 125 LRNLIYLDISHTHTR--------VAFNGIF-------------NGLSSLE--VLKMAGNS 161
Query: 356 IDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQ---IPWKNLKYLKLQSNLLQGPLPVPP- 411
++ L+FLDLS + ++ +L+ L + N +
Sbjct: 162 FQENFLPDIFT-ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS---LDTF 217
Query: 412 -----PRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHN 460
LQ L S N I + PS SL++LNL+ N
Sbjct: 218 PYKCLNSLQVLDYSLNH-----IMTSKKQELQHFPS--------SLAFLNLTQN 258
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 2e-16
Identities = 60/291 (20%), Positives = 103/291 (35%), Gaps = 63/291 (21%)
Query: 249 SLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNS 308
S ++ + L S+P+ I ++ T L L SN + + KL L L LS N
Sbjct: 8 SGTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSSNG 63
Query: 309 LSF-GTTSKVNSSFPQIFILSLSACNISAFPS-FLRSLELAYLDLSENNIDGQIPNWMWE 366
LSF G S+ + + L LS + S FL +L +LD +N+ Q+ +
Sbjct: 64 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVF 122
Query: 367 VGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTG 426
+ L +LD+SH + + G L+ L + N F
Sbjct: 123 LSLRNLIYLDISHTHTRV-------------AFNGIFNGL-----SSLEVLKMAGNSFQE 164
Query: 427 EIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQ---ISWKNLGYLDLRSNLL 483
+ I + +L++L+LS + ++ S +L L++ N
Sbjct: 165 NFLPDIFTELR-------------NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Query: 484 QGPLLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPK 534
+ + + +L VLD S N + T K
Sbjct: 212 FS---LDTFPYK------------------CLNSLQVLDYSLNHIM-TSKK 240
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 6e-09
Identities = 41/210 (19%), Positives = 73/210 (34%), Gaps = 53/210 (25%)
Query: 7 QNVTKLQLLFLDYVDMSTVVP-GTLKNLSSSLTSLSLSYCRIQGEFPENIFR-LSNLQMV 64
+ +L+ L + ++ + +L + L L +S+ + IF LS+L+++
Sbjct: 98 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRN-LIYLDISHTHTR-VAFNGIFNGLSSLEVL 155
Query: 65 RLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLP 124
++ NS LPD LR+L L LSQC P
Sbjct: 156 KMAGNSFQENF-----------------------LPDIFTELRNLTFLDLSQCQLEQLSP 192
Query: 125 ASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLD 184
+ +++ L VL++S N +D + + L + LD
Sbjct: 193 TAFNSLSSLQVLNMS------------HN--NFFSLD--TFPYKC-------LNSLQVLD 229
Query: 185 ISNNQLTGSIPSH--GSGLQNLAVLRLYNN 212
S N + + +LA L L N
Sbjct: 230 YSLNHIM-TSKKQELQHFPSSLAFLNLTQN 258
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 6e-24
Identities = 74/361 (20%), Positives = 133/361 (36%), Gaps = 79/361 (21%)
Query: 181 SRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSDNQLT 239
+ S+ L ++P S + +L L NN +S + F L L + L +N+++
Sbjct: 36 RVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKIS 91
Query: 240 G-HLDAFPS-KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLV 297
H AF + L+KLY++ N L IP ++ ++L L + N + + + L
Sbjct: 92 KIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKV-PKGVFSGLR 147
Query: 298 NLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNID 357
N+ +E+ N L NS F P L+L YL +SE +
Sbjct: 148 NMNCIEMGGNPLE-------NSGFE---------------PGAFDGLKLNYLRISEAKLT 185
Query: 358 GQIPNWMWEVGKDTLSFLDLSHNFITEMKQ---IPWKNLKYLKLQSNLLQGPLPVPP--- 411
IP + +TL+ L L HN I ++ + + L L L N ++ +
Sbjct: 186 -GIPKDLP----ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM---IENGSL 237
Query: 412 ---PRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQI 468
P L+ L NN+ + +P+ + L + L N ITK+
Sbjct: 238 SFLPTLRELHLDNNKLS-------------RVPAGLP--DLKLLQVVYLHTNNITKVGVN 282
Query: 469 SWKNLGYLDLRSNLLQGPLLVPPSSLRVILILNNQFTGEIIH--SICDIIALDVLDLSNN 526
+ +G+ R + I + NN + + + + N
Sbjct: 283 DFCPVGFGVKR------------AYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
Query: 527 R 527
+
Sbjct: 331 K 331
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 7e-23
Identities = 66/335 (19%), Positives = 109/335 (32%), Gaps = 78/335 (23%)
Query: 85 LRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFS 144
LD+ S D L+HL L L
Sbjct: 56 TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-------------------------- 89
Query: 145 GHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNL 204
+S +H +F L ++ +L IS N L IP + +L
Sbjct: 90 ------ISKIH--------EKAFSP-------LRKLQKLYISKNHLV-EIPPN--LPSSL 125
Query: 205 AVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSDNQLTG---HLDAFPSKSLRKLYLTNNRL 260
LR+++N + +P +F+ L + I++ N L AF L L ++ +L
Sbjct: 126 VELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL 184
Query: 261 HGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSS 320
IP + L L L N I E L + L L L HN + N S
Sbjct: 185 T-GIPKDLP--ETLNELHLDHNKIQAI-ELEDLLRYSKLYRLGLGHNQI----RMIENGS 236
Query: 321 F---PQIFILSLSACNISAFPSFLRSLE-LAYLDLSENNI----DGQIPNWMWEVGKDTL 372
P + L L +S P+ L L+ L + L NNI + V +
Sbjct: 237 LSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYY 296
Query: 373 SFLDLSHNFITEMKQIPW------KNLKYLKLQSN 401
+ + L +N + ++ + ++ +
Sbjct: 297 NGISLFNNPVP-YWEVQPATFRCVTDRLAIQFGNY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 6e-22
Identities = 56/299 (18%), Positives = 111/299 (37%), Gaps = 29/299 (9%)
Query: 24 TVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIF-RLSNLQMVRLKFNSNLSGVFPR--SN 80
VP K +S T L L I E ++ F L +L + L N +S + + S
Sbjct: 46 KAVP---KEISPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSP 100
Query: 81 WTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSF 140
L+ L +S ++P ++ L EL + + + + +
Sbjct: 101 LRK-LQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG 156
Query: 141 -KSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHG- 198
+ P + +L + + G D+ ++ L + +N++ +I
Sbjct: 157 NPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQ-AIELEDL 213
Query: 199 SGLQNLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSDNQLTGHLDAFPS-KSLRKLYLT 256
L L L +N + I + + LP LR++ L +N+L+ P K L+ +YL
Sbjct: 214 LRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLH 272
Query: 257 NNRLHGSIPSSIF-------ELANLTYLSLASNNFSGI-VEPYMLAKLVNLAALELSHN 307
N + + + F + A +SL +N V+P + + A++ +
Sbjct: 273 TNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 4e-11
Identities = 58/289 (20%), Positives = 100/289 (34%), Gaps = 67/289 (23%)
Query: 249 SLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNS 308
LR + ++ L ++P I + T L L +N+ S + L +L AL L +N
Sbjct: 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISEL-RKDDFKGLQHLYALVLVNNK 89
Query: 309 LSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVG 368
+S + AF LR L+ L +S+N++ +IP +
Sbjct: 90 IS-----------------KIHE---KAFSP-LRKLQ--KLYISKNHLV-EIPPNLP--- 122
Query: 369 KDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEI 428
+L L + N I K+ + G + + N
Sbjct: 123 -SSLVELRIHDNRIR-------------KVPKGVFSGL-----RNMNCIEMGGNPLENSG 163
Query: 429 IQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQ---G 485
+ L+YL +S +T + + + L L L N +Q
Sbjct: 164 FEPGAFDGL-------------KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIEL 210
Query: 486 PLLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPK 534
L+ S L + + +NQ S+ + L L L NN+LS +P
Sbjct: 211 EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPA 258
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 9e-08
Identities = 33/214 (15%), Positives = 61/214 (28%), Gaps = 39/214 (18%)
Query: 10 TKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQ-GEFPENIFRLSNLQMVRLKF 68
+ L L + + V G L + + + + ++ F F L +R+
Sbjct: 123 SSLVELRIHDNRIRKVPKGVFSGLRN-MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISE 181
Query: 69 NSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLG 128
L+G+ P+ + L L + + + + L L L SL
Sbjct: 182 A-KLTGI-PKDLPET-LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238
Query: 129 NVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSF----DGQFPDIM--------- 175
+ L L L S +P L +L L V L +N+ F +
Sbjct: 239 FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYN 297
Query: 176 --------------------NLTRISRLDISNNQ 189
+T + N +
Sbjct: 298 GISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 5e-23
Identities = 73/329 (22%), Positives = 125/329 (37%), Gaps = 45/329 (13%)
Query: 7 QNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEF-PENIFR-LSNLQMV 64
+ ++ L +L LDY + G L ++L L+L+ C + G N F+ L++L+M+
Sbjct: 76 RGLSSLIILKLDYNQFLQLETGAFNGL-ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEML 134
Query: 65 RLKFNSNLSGVFPR---SNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYG 121
L+ N N+ + P N LD++ + + + N + L +
Sbjct: 135 VLRDN-NIKKIQPASFFLNMRR-FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSIT- 191
Query: 122 FLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFD----GQFPDIMNL 177
+ ++ + +T +DL N F +F D +
Sbjct: 192 -------------LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAG 238
Query: 178 TRISRLDISNNQLTGSIPSH------------GSGLQNLAVLRLYNNTLSGTIPSWLFT- 224
T+I L +SN+ GS H G + L + + + +F+
Sbjct: 239 TKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSH 297
Query: 225 LPLLRDIDLSDNQLTG-HLDAFPS-KSLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLAS 281
L + L+ N++ +AF L KL L+ N L GSI S +FE L L L L+
Sbjct: 298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSY 356
Query: 282 NNFSGIVEPYMLAKLVNLAALELSHNSLS 310
N+ + L NL L L N L
Sbjct: 357 NHIRAL-GDQSFLGLPNLKELALDTNQLK 384
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 99.8 bits (249), Expect = 1e-22
Identities = 75/382 (19%), Positives = 134/382 (35%), Gaps = 50/382 (13%)
Query: 178 TRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSDN 236
++ +D+S N + + S LQ+L L++ T I + F L L + L N
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 237 QLTG-HLDAFPS-KSLRKLYLTNNRLHGS-IPSSIFE-LANLTYLSLASNNFSGIVEPYM 292
Q AF +L L LT L G+ + + F+ L +L L L NN I
Sbjct: 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149
Query: 293 LAKLVNLAALELSHNSL---------SFGTTSKVNSSFPQIFILSLSACNISAFP--SFL 341
+ L+L+ N + +F I + ++ + +
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209
Query: 342 RSLELAYLDLSENNIDGQIPNWMWEVGKDT-LSFLDLSHNFITEMKQIPWKNLKYLKLQS 400
++ + LDLS N + ++ T + L LS+++ N K
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG-SSFGHTNFKDP---D 265
Query: 401 NLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHN 460
N L ++ S ++ I ++ S + S ++ L L L+ N
Sbjct: 266 NFTFKGLE--ASGVKTCDLSKSK-----IFALLKS----VFSHFTD-----LEQLTLAQN 309
Query: 461 FITKMKQISW---KNLGYLDLRSNLLQGPLLVPP------SSLRVILILNNQFTGEIIHS 511
I K+ ++ +L L+L N L + L V+ + N S
Sbjct: 310 EINKIDDNAFWGLTHLLKLNLSQNFLGS---IDSRMFENLDKLEVLDLSYNHIRALGDQS 366
Query: 512 ICDIIALDVLDLSNNRLSGTIP 533
+ L L L N+L ++P
Sbjct: 367 FLGLPNLKELALDTNQLK-SVP 387
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 97.5 bits (243), Expect = 8e-22
Identities = 56/295 (18%), Positives = 111/295 (37%), Gaps = 30/295 (10%)
Query: 7 QNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIF---------- 56
+ +T L++L L ++ + P + L L++ +++ E
Sbjct: 126 KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTL 184
Query: 57 -RLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLS 115
RLS++ + + + + LD+SG F + + ++
Sbjct: 185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL 244
Query: 116 QCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDI- 174
+ + +S G +F G + DL + +
Sbjct: 245 ILSNSYNMGSSFG---HTNFKDPDNFTFKGLEASG------VKTCDLSKSKIFALLKSVF 295
Query: 175 MNLTRISRLDISNNQLTGSIPSHG-SGLQNLAVLRLYNNTLSGTIPSWLFT-LPLLRDID 232
+ T + +L ++ N++ I + GL +L L L N L +I S +F L L +D
Sbjct: 296 SHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLD 353
Query: 233 LSDNQLTG-HLDAFPS-KSLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLASNNF 284
LS N + +F +L++L L N+L S+P IF+ L +L + L +N +
Sbjct: 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 90.2 bits (224), Expect = 2e-19
Identities = 70/367 (19%), Positives = 125/367 (34%), Gaps = 52/367 (14%)
Query: 32 NLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNL----SGVFPRSNWTSPLRC 87
L + + + LS I + RL +LQ ++++ + + F S L
Sbjct: 27 ELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTF---RGLSSLII 83
Query: 88 LDVSGTRFSGQLPDSICNLRHLRELHLSQCNF-YGFLPA-SLGNVTQLAVLSLSFKSFSG 145
L + +F + L +L L L+QCN L +T L +L L +
Sbjct: 84 LKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK- 142
Query: 146 HIPPS--LSNLHQLTDVDLGSNSFDGQFPDI-----------MNLTRISRLDISNNQLTG 192
I P+ N+ + +DL N + + L+ I+ D++ L
Sbjct: 143 KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW 202
Query: 193 SIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDI-------------DLSDNQLT 239
+ ++ L L N ++ F I
Sbjct: 203 EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262
Query: 240 ----GHLDAFPSKSLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLASNNFSGIVEPYMLA 294
+ ++ L+ +++ ++ S+F +L L+LA N + I +
Sbjct: 263 DPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKI-DDNAFW 320
Query: 295 KLVNLAALELSHNSLSFGTTSKVNSSF---PQIFILSLSACNISAFP--SFLRSLELAYL 349
L +L L LS N L S + F ++ +L LS +I A SFL L L
Sbjct: 321 GLTHLLKLNLSQNFL----GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL 376
Query: 350 DLSENNI 356
L N +
Sbjct: 377 ALDTNQL 383
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 2e-12
Identities = 55/321 (17%), Positives = 101/321 (31%), Gaps = 39/321 (12%)
Query: 242 LDAFPS--KSLRKLYLTNNRLHGSIPSSIF-ELANLTYLSLASNNFSGIVEPYMLAKLVN 298
L P + + L+ N + + + F L +L +L + ++ L +
Sbjct: 22 LHQVPELPAHVNYVDLSLNSI-AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS 80
Query: 299 LAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFP----SFLRSLELAYLDLSEN 354
L L+L +N + + + +L+L+ CN+ F L L L +N
Sbjct: 81 LIILKLDYNQFLQ-LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139
Query: 355 NIDGQIPNWMWEVGKDTLSFLDLSHNFITEM-----KQIPWKNLKYLKLQSNLLQG---- 405
NI P + LDL+ N + + K+ L+L S LQ
Sbjct: 140 NIKKIQPASFFL-NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEY 198
Query: 406 -------PLPVPPPRLQFLLASNNQFT----GEIIQSICSSSTLEIPSWISEIGKDSLSY 454
P + L S N F +I + + S S +
Sbjct: 199 WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258
Query: 455 LNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLLVPP------SSLRVILILNNQFTGEI 508
N K + + DL + + + + L + + N+
Sbjct: 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIFA---LLKSVFSHFTDLEQLTLAQNEINKID 315
Query: 509 IHSICDIIALDVLDLSNNRLS 529
++ + L L+LS N L
Sbjct: 316 DNAFWGLTHLLKLNLSQNFLG 336
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 32/174 (18%), Positives = 64/174 (36%), Gaps = 13/174 (7%)
Query: 2 MEALVQNVTKLQLLFLDYVDMSTVVPGTLKNLS-SSLTSLSLSYCRIQGEFPENIFR-LS 59
+++L+ + + + + T K L S + + LS +I +++F +
Sbjct: 241 IQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFT 299
Query: 60 NLQMVRLKFN--SNL-SGVFPRSNWTSPLRCLDVSGTRFSGQLPDSIC-NLRHLRELHLS 115
+L+ + L N + + F + L L++S + + NL L L LS
Sbjct: 300 DLEQLTLAQNEINKIDDNAFWG---LTHLLKLNLSQNFLGS-IDSRMFENLDKLEVLDLS 355
Query: 116 QCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPS-LSNLHQLTDVDLGSNSFD 168
+ S + L L+L +P L L + L +N +D
Sbjct: 356 YNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 408
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 99.4 bits (248), Expect = 2e-22
Identities = 58/235 (24%), Positives = 99/235 (42%), Gaps = 19/235 (8%)
Query: 85 LRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFS 144
R L++ + +S +LRHL L LS+ + + + L L L +
Sbjct: 66 TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT 125
Query: 145 GHIPP-SLSNLHQLTDVDLGSNSF----DGQFPDIMNLTRISRLDIS-NNQLTGSIPSHG 198
IP + L +L ++ L +N F + + RLD+ +L+ I
Sbjct: 126 -TIPNGAFVYLSKLKELWLRNNPIESIPSYAF---NRIPSLRRLDLGELKRLS-YISEGA 180
Query: 199 -SGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG-HLDAFPS-KSLRKLYL 255
GL NL L L L IP+ L L ++DLS N L+ +F L+KL++
Sbjct: 181 FEGLSNLRYLNLAMCNLR-EIPNLTP-LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238
Query: 256 TNNRLHGSIPSSIFE-LANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSL 309
+++ I + F+ L +L ++LA NN + + + L +L + L HN
Sbjct: 239 IQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLL-PHDLFTPLHHLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 1e-21
Identities = 54/245 (22%), Positives = 101/245 (41%), Gaps = 15/245 (6%)
Query: 24 TVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFR-LSNLQMVRLKFNSNLSGVFPRSNWT 82
VP +S++ L+L +IQ N F+ L +L++++L N ++ + +
Sbjct: 56 REVP---DGISTNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNG 110
Query: 83 SP-LRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFK 141
L L++ R + + L L+EL L + + L L L
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170
Query: 142 SFSGHIPP-SLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHG-S 199
+I + L L ++L + + P++ L ++ LD+S N L+ +I
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNHLS-AIRPGSFQ 228
Query: 200 GLQNLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSDNQLTG-HLDAFPS-KSLRKLYLT 256
GL +L L + + + I F L L +I+L+ N LT D F L +++L
Sbjct: 229 GLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLH 287
Query: 257 NNRLH 261
+N +
Sbjct: 288 HNPWN 292
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 96.0 bits (239), Expect = 2e-21
Identities = 69/247 (27%), Positives = 104/247 (42%), Gaps = 26/247 (10%)
Query: 146 HIPPSLSNLHQLTDVDLGSNSF----DGQFPDIMNLTRISRLDISNNQLTGSIPSHG-SG 200
+P +S ++L N F +L + L +S N + +I +G
Sbjct: 57 EVPDGIS--TNTRLLNLHENQIQIIKVNSFK---HLRHLEILQLSRNHIR-TIEIGAFNG 110
Query: 201 LQNLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSDNQLTG-HLDAFPS-KSLRKLYLT- 256
L NL L L++N L+ TIP+ F L L+++ L +N + AF SLR+L L
Sbjct: 111 LANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169
Query: 257 NNRLHGSIPSSIFE-LANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTS 315
RL I FE L+NL YL+LA N I P L L+ L L+LS N LS
Sbjct: 170 LKRLS-YISEGAFEGLSNLRYLNLAMCNLREI--PN-LTPLIKLDELDLSGNHLSA-IRP 224
Query: 316 KVNSSFPQIFILSLSACNISAFPS--FLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLS 373
+ L + I F L ++L+ NN+ +P+ ++ L
Sbjct: 225 GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFT-PLHHLE 282
Query: 374 FLDLSHN 380
+ L HN
Sbjct: 283 RIHLHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 4e-12
Identities = 58/299 (19%), Positives = 101/299 (33%), Gaps = 69/299 (23%)
Query: 249 SLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNS 308
K+ L +P I N L+L N I + L +L L+LS N
Sbjct: 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQII-KVNSFKHLRHLEILQLSRNH 99
Query: 309 LSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVG 368
+ ++ AF L +L L+L +N + +
Sbjct: 100 IR-----------------TIEI---GAFNG-LANLN--TLELFDNRLTTIPNGAFVYLS 136
Query: 369 KDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFL-LASNNQFTGE 427
K L L L +N I IP + P L+ L L +
Sbjct: 137 K--LKELWLRNNPIES---IPSYAFNRI---------------PSLRRLDLGELKR---- 172
Query: 428 IIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISW-KNLGYLDLRSNLLQ-- 484
+ I S E G +L YLNL+ + ++ ++ L LDL N L
Sbjct: 173 -LSYI-SEGAFE--------GLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAI 222
Query: 485 -GPLLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSPW 542
L+ + ++ +Q ++ ++ +L ++L++N L+ +P F+P
Sbjct: 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPH--DLFTPL 278
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 2e-09
Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 8/165 (4%)
Query: 7 QNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYC-RIQGEFPENIFR-LSNLQMV 64
++KL+ L+L + ++ + S L L L R+ E F LSNL+ +
Sbjct: 133 VYLSKLKELWLRNNPIESIPSYAFNRIPS-LRRLDLGELKRLS-YISEGAFEGLSNLRYL 190
Query: 65 RLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLP 124
L NL + P L LD+SG S P S L HL++L + Q
Sbjct: 191 NLAMC-NLREI-PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER 248
Query: 125 ASLGNVTQLAVLSLSFKSFSGHIPPS-LSNLHQLTDVDLGSNSFD 168
+ N+ L ++L+ + + +P + LH L + L N ++
Sbjct: 249 NAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWN 292
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 3e-22
Identities = 53/210 (25%), Positives = 80/210 (38%), Gaps = 16/210 (7%)
Query: 85 LRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFS 144
+ + + G R S S R+L L L A+ + L L LS +
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 145 GHIPPS-LSNLHQLTDVDLGSNSF----DGQFPDIMNLTRISRLDISNNQLTGSIPSHG- 198
+ P+ L +L + L G F L + L + +N L ++P
Sbjct: 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLF---RGLAALQYLYLQDNALQ-ALPDDTF 149
Query: 199 SGLQNLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSDNQLTG-HLDAFPS-KSLRKLYL 255
L NL L L+ N +S ++P F L L + L N++ H AF L LYL
Sbjct: 150 RDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208
Query: 256 TNNRLHGSIPSSIFE-LANLTYLSLASNNF 284
N L ++P+ L L YL L N +
Sbjct: 209 FANNLS-ALPTEALAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 4e-20
Identities = 60/235 (25%), Positives = 90/235 (38%), Gaps = 36/235 (15%)
Query: 178 TRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSDN 236
R+ + N+++ + +NL +L L++N L+ I + FT L LL +DLSDN
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDN 90
Query: 237 -QLTG-HLDAFPS-KSLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLASNNFSGIVEPYM 292
QL F L L+L L + +F LA L YL L N +
Sbjct: 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQAL-PDDT 148
Query: 293 LAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLS 352
L NL L L N +S S+ AF L SL+ L L
Sbjct: 149 FRDLGNLTHLFLHGNRIS-----------------SVPE---RAFRG-LHSLD--RLLLH 185
Query: 353 ENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQ---IPWKNLKYLKLQSNLLQ 404
+N + + + L L L N ++ + P + L+YL+L N
Sbjct: 186 QNRVA-HVHPHAFR-DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 4e-20
Identities = 56/229 (24%), Positives = 83/229 (36%), Gaps = 22/229 (9%)
Query: 131 TQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSF----DGQFPDIMNLTRISRLDIS 186
+ L S S LT + L SN F L + +LD+S
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF---TGLALLEQLDLS 88
Query: 187 NNQLTGSIPSHG-SGLQNLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSDNQLTG-HLD 243
+N S+ GL L L L L + LF L L+ + L DN L D
Sbjct: 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDD 147
Query: 244 AFPS-KSLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLASNNFSGIVEPYMLAKLVNLAA 301
F +L L+L NR+ S+P F L +L L L N + + P+ L L
Sbjct: 148 TFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHV-HPHAFRDLGRLMT 205
Query: 302 LELSHNSLSFGTTSKVNSSFPQIFILSLSA------CNISAFPSFLRSL 344
L L N+LS ++ + + L L+ C ++L+
Sbjct: 206 LYLFANNLSA-LPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKF 253
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 3e-17
Identities = 54/237 (22%), Positives = 84/237 (35%), Gaps = 39/237 (16%)
Query: 10 TKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFR-LSNLQMVRLKF 68
Q +FL +S V + + +LT L L + F L+ L+ + L
Sbjct: 32 AASQRIFLHGNRISHVPAASFRAC-RNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSD 89
Query: 69 NSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLG 128
N+ L V P + F G L L LHL +C P
Sbjct: 90 NAQLRSVDPAT---------------FHG--------LGRLHTLHLDRCGLQELGPGLFR 126
Query: 129 NVTQLAVLSLSFKSFSGHIPP-SLSNLHQLTDVDLGSNSF----DGQFPDIMNLTRISRL 183
+ L L L + +P + +L LT + L N + F L + RL
Sbjct: 127 GLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAF---RGLHSLDRL 182
Query: 184 DISNNQLTGSIPSHG-SGLQNLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSDNQL 238
+ N++ + H L L L L+ N LS +P+ L L+ + L+DN
Sbjct: 183 LLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 43/218 (19%), Positives = 68/218 (31%), Gaps = 37/218 (16%)
Query: 333 NISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQ---IP 389
+ A P + + L N I L+ L L N + +
Sbjct: 22 GLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRN--LTILWLHSNVLARIDAAAFTG 78
Query: 390 WKNLKYLKLQSNLLQGPLP----VPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWIS 445
L+ L L N + RL L +Q +
Sbjct: 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-----LQEL-GPGLFR------ 126
Query: 446 EIGKDSLSYLNLSHNFITKMKQISWKNLG---YLDLRSNLLQGPLLVPP------SSLRV 496
G +L YL L N + + ++++LG +L L N + VP SL
Sbjct: 127 --GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS---VPERAFRGLHSLDR 181
Query: 497 ILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPK 534
+L+ N+ H+ D+ L L L N LS +P
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPT 218
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 97.5 bits (243), Expect = 8e-22
Identities = 54/258 (20%), Positives = 93/258 (36%), Gaps = 35/258 (13%)
Query: 10 TKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFR-LSNLQMVRLKF 68
+ + L L ++ + T ++L L L L I+ + F L++L + L
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRHLHH-LEVLQLGRNSIR-QIEVGAFNGLASLNTLELFD 132
Query: 69 NSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLG 128
N L + + L LREL L +
Sbjct: 133 NW--------------LTVIP----------SGAFEYLSKLRELWLRNNPIESIPSYAFN 168
Query: 129 NVTQLAVLSLSFKSFSGHIPP-SLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISN 187
V L L L +I + L L ++LG + P++ L + L++S
Sbjct: 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVGLEELEMSG 227
Query: 188 NQLTGSIPSHG-SGLQNLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSDNQLTG-HLDA 244
N I GL +L L + N+ +S I F L L +++L+ N L+ D
Sbjct: 228 NHFP-EIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDL 285
Query: 245 FPS-KSLRKLYLTNNRLH 261
F + L +L+L +N +
Sbjct: 286 FTPLRYLVELHLHHNPWN 303
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 96.0 bits (239), Expect = 3e-21
Identities = 68/286 (23%), Positives = 107/286 (37%), Gaps = 50/286 (17%)
Query: 132 QLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSF----DGQFPDIMNLTRISRLDISN 187
Q + + + + S +P + ++L N+ F +L + L +
Sbjct: 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFR---HLHHLEVLQLGR 108
Query: 188 NQLTGSIPSHG-SGLQNLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSDNQLTG-HLDA 244
N + I +GL +L L L++N L+ IPS F L LR++ L +N + A
Sbjct: 109 NSIR-QIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYA 166
Query: 245 FPS-KSLRKLYLT-NNRLHGSIPSSIFE-LANLTYLSLASNNFSGIVEPYMLAKLVNLAA 301
F SL +L L +L I FE L NL YL+L N + L LV L
Sbjct: 167 FNRVPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIKDMPN---LTPLVGLEE 222
Query: 302 LELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIP 361
LE+S N I SF L L + + + I
Sbjct: 223 LEMSGNHFP----------------------EIRPG-SFHGLSSLKKLWVMNSQVS-LIE 258
Query: 362 NWMWEVGKDTLSFLDLSHNFITEMKQ---IPWKNLKYLKLQSNLLQ 404
++ G +L L+L+HN ++ + P + L L L N
Sbjct: 259 RNAFD-GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 7e-13
Identities = 56/325 (17%), Positives = 102/325 (31%), Gaps = 97/325 (29%)
Query: 226 PLLRDIDLSDNQLTGHLDAFPS---KSLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLAS 281
+ + L+ P + R L L N + I + F L +L L L
Sbjct: 54 NQFSKVVCTRRGLS----EVPQGIPSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGR 108
Query: 282 NNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFL 341
N+ I E L +L LEL N L+ + + AF +L
Sbjct: 109 NSIRQI-EVGAFNGLASLNTLELFDNWLT-----------------VIPS---GAF-EYL 146
Query: 342 RSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSH-NFITEMKQIPWKNLKYLKLQS 400
L L L N I IP++ + +L LDL + +
Sbjct: 147 SKLR--ELWLRNNPI-ESIPSYAFN-RVPSLMRLDLGELKKLEY-------------ISE 189
Query: 401 NLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHN 460
+G L++L I+ + + + L L L +S N
Sbjct: 190 GAFEGL-----FNLKYLNLGMCN-----IKDMPNLTPLV-----------GLEELEMSGN 228
Query: 461 FITKMKQ---ISWKNLGYLDLRSNLLQGPLLVPPSSLRVILILNNQFTGEIIHSICDIIA 517
+++ +L L + ++ + + ++ + +
Sbjct: 229 HFPEIRPGSFHGLSSLKKLWVMNSQVSL---IERNAFD------------------GLAS 267
Query: 518 LDVLDLSNNRLSGTIPKCIGNFSPW 542
L L+L++N LS ++P F+P
Sbjct: 268 LVELNLAHNNLS-SLPH--DLFTPL 289
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 2e-09
Identities = 35/165 (21%), Positives = 67/165 (40%), Gaps = 8/165 (4%)
Query: 7 QNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYC-RIQGEFPENIFR-LSNLQMV 64
+ ++KL+ L+L + ++ + S L L L +++ E F L NL+ +
Sbjct: 144 EYLSKLRELWLRNNPIESIPSYAFNRVPS-LMRLDLGELKKLE-YISEGAFEGLFNLKYL 201
Query: 65 RLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLP 124
L N+ + P L L++SG F P S L L++L +
Sbjct: 202 NLGMC-NIKDM-PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER 259
Query: 125 ASLGNVTQLAVLSLSFKSFSGHIPPS-LSNLHQLTDVDLGSNSFD 168
+ + L L+L+ + S +P + L L ++ L N ++
Sbjct: 260 NAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWN 303
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 4e-21
Identities = 79/470 (16%), Positives = 148/470 (31%), Gaps = 73/470 (15%)
Query: 12 LQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSN 71
+M + + L++ LTSL I I +L+ L + N+
Sbjct: 20 FASEVAAAFEMQATDTISEEQLAT-LTSLDCHNSSITD--MTGIEKLTGLTKLICTSNN- 75
Query: 72 LSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVT 131
+ LD+S +L L + +T
Sbjct: 76 -------------ITTLDLS-------------QNTNLTYLACDSNKLTNL---DVTPLT 106
Query: 132 QLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLT 191
+L L+ + +S LT ++ N+ D+ + T+++ LD N+
Sbjct: 107 KLTYLNCDTNKLTKL---DVSQNPLLTYLNCARNTL--TEIDVSHNTQLTELDCHLNKKI 161
Query: 192 GSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLR 251
+ + L L N ++ + + LL ++ N +T LD + L
Sbjct: 162 TKLDV--TPQTQLTTLDCSFNKIT-ELD--VSQNKLLNRLNCDTNNIT-KLDLNQNIQLT 215
Query: 252 KLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSF 311
L ++N+L I + L LTY + N + + ++ L L L L
Sbjct: 216 FLDCSSNKLT-EIDVT--PLTQLTYFDCSVNPLTEL----DVSTLSKLTTLHCIQTDL-- 266
Query: 312 GTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNID----GQIPNWMWEV 367
+ Q+ C + +L LD I Q P
Sbjct: 267 --LEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPK----- 319
Query: 368 GKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQG-PLPVPPPRLQFLLASNNQFTG 426
L +L L++ +TE+ LK L + +Q P L + Q
Sbjct: 320 ----LVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTI- 374
Query: 427 EIIQSICSSSTLEI---PSWISEIGKDSLSYLNLSHNFITKMKQISWKNL 473
+ + ++++L I P + + G + I+W+NL
Sbjct: 375 TMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENL 424
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 5e-19
Identities = 77/434 (17%), Positives = 138/434 (31%), Gaps = 81/434 (18%)
Query: 102 SICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVD 161
S L L L + + +T L L + + + LS LT +
Sbjct: 37 SEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNITT---LDLSQNTNLTYLA 91
Query: 162 LGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSW 221
SN D+ LT+++ L+ N+LT + S L L NTL+ I
Sbjct: 92 CDSNKLTN--LDVTPLTKLTYLNCDTNKLT-KLDV--SQNPLLTYLNCARNTLT-EID-- 143
Query: 222 LFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLAS 281
+ L ++D N+ LD P L L + N++ + + L L+ +
Sbjct: 144 VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDT 200
Query: 282 NNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFL 341
NN + + L + + L L+ S N L+ + ++
Sbjct: 201 NNITKLD----LNQNIQLTFLDCSSNKLT---------------EIDVTPLT-------- 233
Query: 342 RSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSN 401
+L Y D S N + + + + L+ L + E+ L Y + +
Sbjct: 234 ---QLTYFDCSVNPLTELDVSTLSK-----LTTLHCIQTDLLEIDLTHNTQLIYFQAEGC 285
Query: 402 LLQGPLPVP-PPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHN 460
L V +L L T L++ L YL L++
Sbjct: 286 RKIKELDVTHNTQLYLLDCQAAGIT-----------ELDLSQNP------KLVYLYLNNT 328
Query: 461 FITKMKQISWKNLGYLDLRSNLLQG-PLLVPPSSLRVILILNNQFTGEIIHSICDIIALD 519
+T++ L L + +Q + +L Q I +
Sbjct: 329 ELTELDVSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQ-----------TITMP 377
Query: 520 VLDLSNNRLSGTIP 533
L+NN L+ +
Sbjct: 378 KETLTNNSLTIAVS 391
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 4e-15
Identities = 60/298 (20%), Positives = 100/298 (33%), Gaps = 34/298 (11%)
Query: 233 LSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYM 292
L Q D FP + + + S +LA LT L +++ + +
Sbjct: 3 LKAGQTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--- 59
Query: 293 LAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLS 352
+ KL L L + N++ T+ S + L+ + ++ +L YL+
Sbjct: 60 IEKLTGLTKLICTSNNI----TTLDLSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCD 114
Query: 353 ENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPP- 411
N + + L++L+ + N +TE+ L L N L V P
Sbjct: 115 TNKLTKLDVSQN-----PLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQ 169
Query: 412 PRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWK 471
+L L S N+ T L++ L+ LN N ITK+
Sbjct: 170 TQLTTLDCSFNKIT-----------ELDVSQNK------LLNRLNCDTNNITKLDLNQNI 212
Query: 472 NLGYLDLRSNLLQGPLLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLS 529
L +LD SN L + P + L N T + + L L L
Sbjct: 213 QLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTEL---DVSTLSKLTTLHCIQTDLL 267
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 2e-14
Identities = 59/361 (16%), Positives = 108/361 (29%), Gaps = 36/361 (9%)
Query: 6 VQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVR 65
V +TKL L D ++ + LT L+ + + ++ + L +
Sbjct: 102 VTPLTKLTYLNCDTNKLTKLDVSQNPL----LTYLNCARNTLT---EIDVSHNTQLTELD 154
Query: 66 LKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPA 125
N ++ + L LD S + + + + L L+ N
Sbjct: 155 CHLNKKIT--KLDVTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNITKL--- 206
Query: 126 SLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDI 185
L QL L S + I ++ L QLT D N D+ L++++ L
Sbjct: 207 DLNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTEL--DVSTLSKLTTLHC 261
Query: 186 SNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF 245
L I + L + + + L +D +T LD
Sbjct: 262 IQTDLL-EIDL--THNTQLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT-ELDLS 315
Query: 246 PSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELS 305
+ L LYL N L + S L LS + + + K+ L +
Sbjct: 316 QNPKLVYLYLNNTELT-ELDVS--HNTKLKSLSCVNAHIQDFSS---VGKIPALNNNFEA 369
Query: 306 HNSLS----FGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIP 361
T+ + +L ++ P + A ++ N+ P
Sbjct: 370 EGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNP 429
Query: 362 N 362
Sbjct: 430 A 430
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 93.6 bits (233), Expect = 5e-21
Identities = 61/306 (19%), Positives = 106/306 (34%), Gaps = 54/306 (17%)
Query: 137 SLSFKSFSGHIPPSLSNLHQLTDVDLGSNSF----DGQFPDIMNLTRISRLDISNNQLTG 192
S S S + ++ +L DL +N + +NL L +++N +
Sbjct: 40 SGSLNSIPSGLTEAVKSL------DLSNNRITYISNSDLQRCVNLQA---LVLTSNGIN- 89
Query: 193 SIPSHG-SGLQNLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSDNQLT--GHLDAF-PS 247
+I S L +L L L N LS + S F L L ++L N G F
Sbjct: 90 TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL 148
Query: 248 KSLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSH 306
L+ L + N I F L L L + +++ EP L + N++ L L
Sbjct: 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY-EPKSLKSIQNVSHLILHM 207
Query: 307 NSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWE 366
+IF+ S+ + LEL DL + ++
Sbjct: 208 KQH---------ILLLEIFVDVTSS---------VECLELRDTDLDTFHF-SELSTGETN 248
Query: 367 --VGKDTLSFLDLSHNFITEMKQIPWK--NLKYLKLQSNLLQGPLPVPP------PRLQF 416
+ K T + ++ + ++ ++ + L L+ N L+ VP LQ
Sbjct: 249 SLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS---VPDGIFDRLTSLQK 305
Query: 417 LLASNN 422
+ N
Sbjct: 306 IWLHTN 311
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 87.9 bits (218), Expect = 4e-19
Identities = 59/279 (21%), Positives = 105/279 (37%), Gaps = 27/279 (9%)
Query: 24 TVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIF-RLSNLQMVRLKFN--SNL-SGVFPRS 79
+P L+ ++ SL LS RI + R NLQ + L N + + F S
Sbjct: 44 NSIP---SGLTEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSF--S 97
Query: 80 NWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASL-GNVTQLAVLSL 138
+ S L LD+S S L L L+L + SL ++T+L +L +
Sbjct: 98 SLGS-LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 156
Query: 139 SFKSFSGHIPP-SLSNLHQLTDVDLGSNSFDGQFPDI-MNLTRISRLDISNNQLTGSIPS 196
I + L L ++++ ++ P ++ +S L + Q +
Sbjct: 157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLE 215
Query: 197 HG-SGLQNLAVLRLYNNTLSGTIPSWLFT--------LPLLRDIDLSDNQLTGHLDAFPS 247
++ L L + L S L T R++ ++D L +
Sbjct: 216 IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ 275
Query: 248 -KSLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLASNNF 284
L +L + N+L S+P IF+ L +L + L +N +
Sbjct: 276 ISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 86.7 bits (215), Expect = 1e-18
Identities = 49/246 (19%), Positives = 86/246 (34%), Gaps = 23/246 (9%)
Query: 7 QNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFR-LSNLQMVR 65
Q LQ L L ++T+ + +L SL L LSY + + F+ LS+L +
Sbjct: 73 QRCVNLQALVLTSNGINTIEEDSFSSL-GSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLN 130
Query: 66 LKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQL----PDSICNLRHLRELHLSQCNFYG 121
L N + S S L L + L L EL + +
Sbjct: 131 LLGN-PYKTLGETS-LFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188
Query: 122 FLPASLGNVTQLAVLSLSFKSFSGHIPP-SLSNLHQLTDVDLGSNSFD---------GQF 171
+ P SL ++ ++ L L K + + + ++L D G+
Sbjct: 189 YEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET 247
Query: 172 PDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFT-LPLLRD 230
++ + I++ L + + + L L N L ++P +F L L+
Sbjct: 248 NSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQK 305
Query: 231 IDLSDN 236
I L N
Sbjct: 306 IWLHTN 311
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 84.0 bits (208), Expect = 1e-17
Identities = 57/311 (18%), Positives = 109/311 (35%), Gaps = 43/311 (13%)
Query: 184 DISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG-HL 242
S+ L SIPS + + + L L NN ++ S L L+ + L+ N +
Sbjct: 37 KGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE 93
Query: 243 DAFPS-KSLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLASNNFSGIVEPYMLAKLVNLA 300
D+F S SL L L+ N L ++ SS F+ L++LT+L+L N + + E + + L L
Sbjct: 94 DSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152
Query: 301 ALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQI 360
L + + + F L LE L++ +++
Sbjct: 153 ILRVGNMDT----------------FTKIQR---KDFAG-LTFLE--ELEIDASDLQ-SY 189
Query: 361 PNWMWEVGKDTLSFLDLSHNFITEMKQIPWK---NLKYLKLQSNLLQGPLPVPPPRLQFL 417
+ +S L L + +I +++ L+L+ L +
Sbjct: 190 EPKSLK-SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET- 247
Query: 418 LASNNQFTGEIIQSICSSSTLEIPSWISEIGK-DSLSYLNLSHNFITKMKQI---SWKNL 473
N + + + + + + L L S N + + +L
Sbjct: 248 ----NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSL 303
Query: 474 GYLDLRSNLLQ 484
+ L +N
Sbjct: 304 QKIWLHTNPWD 314
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 82.9 bits (205), Expect = 2e-17
Identities = 53/294 (18%), Positives = 101/294 (34%), Gaps = 42/294 (14%)
Query: 79 SNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSL 138
S T ++ LD+S R + + +L+ L L+ S ++ L L L
Sbjct: 48 SGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107
Query: 139 SFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHG 198
S N L+ +L S+ F L+ ++ L++ N ++
Sbjct: 108 S------------YN--YLS--NLSSSWFKP-------LSSLTFLNLLGNPYK-TLGETS 143
Query: 199 --SGLQNLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSDNQLTG-HLDAFPS-KSLRKL 253
S L L +LR+ N I F L L ++++ + L + S +++ L
Sbjct: 144 LFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 203
Query: 254 YLTNNRLHGSIPSSIFE-LANLTYLSLASNNFSGI-------VEPYMLAKLVNLAALELS 305
L + + + +++ L L + E L K ++++
Sbjct: 204 ILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKIT 262
Query: 306 HNSLSFGTTSKVNSSFPQIFILSLSACNISAFPS--FLRSLELAYLDLSENNID 357
SL K+ + + L S + + P F R L + L N D
Sbjct: 263 DESLF--QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 64.8 bits (158), Expect = 2e-11
Identities = 58/298 (19%), Positives = 102/298 (34%), Gaps = 57/298 (19%)
Query: 254 YLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGT 313
++ L+ SIPS + + L L++N + I L + VNL AL L+ N ++
Sbjct: 37 KGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNGINT-I 91
Query: 314 TSKVNSSFPQIFILSLSACNISAFPS--FLRSLELAYLDLSENNIDGQIPNWMWEVGKDT 371
SS + L LS +S S F L +L+L N +
Sbjct: 92 EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTK 150
Query: 372 LSFLDLSHNF-ITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQ 430
L L + + T+ +Q G L+ L + +Q
Sbjct: 151 LQILRVGNMDTFTK-------------IQRKDFAGL-----TFLEELEIDASD-----LQ 187
Query: 431 SICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWK---NLGYLDLRSNLLQGP- 486
S S I + +S+L L + +I ++ L+LR L
Sbjct: 188 SYEPKSLKSIQN---------VSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH 238
Query: 487 ----------LLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPK 534
L+ + R + I + +++ + I L L+ S N+L ++P
Sbjct: 239 FSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPD 294
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 95.3 bits (237), Expect = 7e-21
Identities = 74/424 (17%), Positives = 142/424 (33%), Gaps = 56/424 (13%)
Query: 160 VDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIP 219
VD N D+ T L+IS N ++ S L L +L + +N + +
Sbjct: 5 VDRSKNGLIHVPKDLSQKTT--ILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLD 61
Query: 220 SWLFT-LPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFE-LANLTYL 277
+F L +DLS N+L + P+ +L+ L L+ N F ++ L +L
Sbjct: 62 ISVFKFNQELEYLDLSHNKLV-KISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFL 120
Query: 278 SLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLS------- 330
L++ + + + +L ++ + SL
Sbjct: 121 GLSTTHLEKSS----VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK 176
Query: 331 ACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKD---------TLSFLDLSHNF 381
+ S L ++ D + ++ + K TL+ ++ + N
Sbjct: 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS 236
Query: 382 ITEMKQIPW-KNLKYLKLQSNLLQGPLPVPPPR--------LQFLLASNNQFTGEI---- 428
+ Q+ W + Y + + LQG L L ++ F
Sbjct: 237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIY 296
Query: 429 -------IQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQ---ISWKNLGYLDL 478
I++ S T + +L+ S+N +T L L L
Sbjct: 297 EIFSNMNIKNFTVSGTRMVHMLCPSKIS-PFLHLDFSNNLLTDTVFENCGHLTELETLIL 355
Query: 479 RSNLLQ-----GPLLVPPSSLRVILILNNQFTGEIIHSICD-IIALDVLDLSNNRLSGTI 532
+ N L+ + SL+ + I N + + C +L L++S+N L+ TI
Sbjct: 356 QMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI 415
Query: 533 PKCI 536
+C+
Sbjct: 416 FRCL 419
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 92.2 bits (229), Expect = 6e-20
Identities = 69/414 (16%), Positives = 146/414 (35%), Gaps = 41/414 (9%)
Query: 7 QNVTKLQLLFLDYVDMSTV-VPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVR 65
L+ L L + + + N+S L L LS ++ I L+ +++
Sbjct: 87 HPTVNLKHLDLSFNAFDALPICKEFGNMSQ-LKFLGLSTTHLEKSSVLPIAHLNISKVLL 145
Query: 66 LKFNSNLSGVFPRS---NWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGF 122
+ + P T L + + F L S+ + +L ++
Sbjct: 146 VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK 205
Query: 123 LPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISR 182
+ + L +++ NSF + ++ T +
Sbjct: 206 CS-------------YFLSILAKLQTNPKLSNLTLNNIETTWNSFI-RILQLVWHTTVWY 251
Query: 183 LDISNNQLTGSIPSH-----GSGLQNLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSDN 236
ISN +L G + G+ L+ L++ ++ ++ S+++ + + + +
Sbjct: 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG-FPQSYIYEIFSNMNIKNFTVS 310
Query: 237 QLTGHLDAFPSK--SLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGI-VEPYML 293
PSK L +NN L ++ + L L L L N + M
Sbjct: 311 GTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT 370
Query: 294 AKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSE 353
++ +L L++S NS+S+ S + L++S+ ++ + LDL
Sbjct: 371 TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHS 430
Query: 354 NNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPW------KNLKYLKLQSN 401
N I IP + ++ L L+++ N + K +P +L+ + L +N
Sbjct: 431 NKIK-SIPKQVVKLEA--LQELNVASNQL---KSVPDGIFDRLTSLQKIWLHTN 478
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 89.5 bits (222), Expect = 4e-19
Identities = 66/443 (14%), Positives = 140/443 (31%), Gaps = 49/443 (11%)
Query: 107 RHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNS 166
+ L++SQ + + ++++L +L +S +L +DL N
Sbjct: 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80
Query: 167 FDGQFPDIMNLTRISRLDISNNQLTGSIPSHG--SGLQNLAVLRLYNNTLSGTIPSWLFT 224
+ LD+S N ++P + L L L L + +
Sbjct: 81 LVKISCH--PTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137
Query: 225 LPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNF 284
L + + + + D + L I +++ T +L +N
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197
Query: 285 SGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSL 344
++E + +++ A ++ LS T + + +++ +
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI----------RILQLVWHT 247
Query: 345 ELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPW------KNLKYLKL 398
+ Y +S + GQ+ ++ +L L + N+
Sbjct: 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNF 307
Query: 399 QSNLLQG-PLPVP--PPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYL 455
+ + + P L SNN T + + C T L L
Sbjct: 308 TVSGTRMVHMLCPSKISPFLHLDFSNNLLT-DTVFENCGHLT-------------ELETL 353
Query: 456 NLSHNFITKMKQIS-----WKNLGYLDLRSNLLQGPLLVP----PSSLRVILILNNQFTG 506
L N + ++ +I+ K+L LD+ N + SL + + +N T
Sbjct: 354 ILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413
Query: 507 EIIHSICDIIALDVLDLSNNRLS 529
I + + VLDL +N++
Sbjct: 414 TIFRCLPP--RIKVLDLHSNKIK 434
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 86.8 bits (215), Expect = 4e-18
Identities = 88/519 (16%), Positives = 160/519 (30%), Gaps = 89/519 (17%)
Query: 24 TVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTS 83
VP K+LS T L++S I + +I LS L+++ + N
Sbjct: 13 IHVP---KDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNR------------- 56
Query: 84 PLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSF 143
++ LD + L L LS N+ L + +F +
Sbjct: 57 -IQYLD----------ISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDAL 105
Query: 144 SGHIPPSLSNLHQLTDVDLGSNSF-DGQFPDIMNLTRISRLDISNNQLTGSIPS---HGS 199
I N+ QL + L + I +L L +
Sbjct: 106 P--ICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF 163
Query: 200 GLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPS--------KSLR 251
++L ++ N + + T+ L ++ F S L
Sbjct: 164 NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLS 223
Query: 252 KLYLTNNRLHGSIPSSIFELA---NLTYLSLASNNFSGIVE----PYMLAKLVNLAALEL 304
L L N + I +L + Y S+++ G ++ Y L L+ ++
Sbjct: 224 NLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQV 283
Query: 305 SHNSLSFGTTSKVNSSFPQIFILSLSACNISAFP--SFLRSLELAYLDLSENNIDGQIPN 362
+ F S + F + I + + + +LD S N + +
Sbjct: 284 VSDVFGF-PQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFE 342
Query: 363 WMWEVGKDTLSFLDLSHNFITEMKQIP-----WKNLKYLKLQSNLLQGPLPVP----PPR 413
+ + L L L N + E+ +I K+L+ L + N +
Sbjct: 343 NCGHLTE--LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400
Query: 414 LQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWK-- 471
L L S+N + I + L+L N I + + K
Sbjct: 401 LLSLNMSSNI----------------LTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLE 444
Query: 472 NLGYLDLRSNLLQGPLLVPP------SSLRVILILNNQF 504
L L++ SN L+ VP +SL+ I + N +
Sbjct: 445 ALQELNVASNQLKS---VPDGIFDRLTSLQKIWLHTNPW 480
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 75.7 bits (186), Expect = 1e-14
Identities = 47/240 (19%), Positives = 91/240 (37%), Gaps = 18/240 (7%)
Query: 35 SSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRS-----NWTSPLRCLD 89
+++ S+S ++QG+ F S + L + +S VF S + +
Sbjct: 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKN 306
Query: 90 VSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFS--GHI 147
+ + + L S + + G++T+L L L I
Sbjct: 307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI 366
Query: 148 PPSLSNLHQLTDVDLGSNSFDGQFPDIM--NLTRISRLDISNNQLTGSIPSHGSGLQNLA 205
+ + L +D+ NS + L++S+N LT +I +
Sbjct: 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF--RCLPPRIK 424
Query: 206 VLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLT----GHLDAFPSKSLRKLYLTNNRLH 261
VL L++N + +IP + L L++++++ NQL G D S L+K++L N
Sbjct: 425 VLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTS--LQKIWLHTNPWD 481
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 3e-11
Identities = 47/244 (19%), Positives = 84/244 (34%), Gaps = 11/244 (4%)
Query: 4 ALVQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSL-SLSYCRIQGE----FPENIF-R 57
++Q V + + ++ ++ S TSL +LS ++ + I+
Sbjct: 239 RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI 298
Query: 58 LSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQC 117
SN+ + + + SP LD S + + ++ +L L L L
Sbjct: 299 FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMN 358
Query: 118 NF--YGFLPASLGNVTQLAVLSLSFKSFSGHIPPSL-SNLHQLTDVDLGSNSFDGQFPDI 174
+ + L L +S S S S L +++ SN
Sbjct: 359 QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC 418
Query: 175 MNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLS 234
+ RI LD+ +N++ SIP L+ L L + +N L L L+ I L
Sbjct: 419 L-PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLH 476
Query: 235 DNQL 238
N
Sbjct: 477 TNPW 480
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 5e-07
Identities = 35/198 (17%), Positives = 64/198 (32%), Gaps = 33/198 (16%)
Query: 10 TKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFN 69
+ + + V +S L S + EN L+ L+ + L+ N
Sbjct: 300 SNMNIKNFTVSGTRMVHMLCPSKISP-FLHLDFSNNLLTDTVFENCGHLTELETLILQMN 358
Query: 70 -----SNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSIC-NLRHLRELHLS-------- 115
S ++ + + S L+ LD+S S C + L L++S
Sbjct: 359 QLKELSKIAEMT--TQMKS-LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI 415
Query: 116 -------------QCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPP-SLSNLHQLTDVD 161
N +P + + L L+++ +P L L +
Sbjct: 416 FRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIW 474
Query: 162 LGSNSFDGQFPDIMNLTR 179
L +N +D P I L+R
Sbjct: 475 LHTNPWDCSCPRIDYLSR 492
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 1e-20
Identities = 53/259 (20%), Positives = 94/259 (36%), Gaps = 19/259 (7%)
Query: 151 LSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLY 210
L + G ++ +L I+ L +T +I L NL L L
Sbjct: 15 DPALANAIKIAAGKSNVTD-TVTQADLDGITTLSAFGTGVT-TI-EGVQYLNNLIGLELK 71
Query: 211 NNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPS-KSLRKLYLTNNRLHGSIPSSIF 269
+N ++ P L L + +++LS N L ++ A +S++ L LT+ ++ + + +
Sbjct: 72 DNQITDLAP--LKNLTKITELELSGNPLK-NVSAIAGLQSIKTLDLTSTQI--TDVTPLA 126
Query: 270 ELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSL 329
L+NL L L N + I LA L NL L + + + + ++ ++ L
Sbjct: 127 GLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQV---SDLTPLANLSKLTTLKA 180
Query: 330 SACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIP 389
IS L + L N I P L + L++ IT
Sbjct: 181 DDNKISDISPLASLPNLIEVHLKNNQISDVSPL----ANTSNLFIVTLTNQTITNQPVFY 236
Query: 390 WKNLKYLKLQSNLLQGPLP 408
NL + P+
Sbjct: 237 NNNLVVPNVVKGPSGAPIA 255
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 84.4 bits (209), Expect = 4e-18
Identities = 55/303 (18%), Positives = 108/303 (35%), Gaps = 41/303 (13%)
Query: 176 NLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSD 235
L ++ + +T ++ + L + L + ++ TI + L L ++L D
Sbjct: 17 ALANAIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKD 72
Query: 236 NQLTGHLDAFPS-KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLA 294
NQ+T L + + +L L+ N L S+I L ++ L L S + + LA
Sbjct: 73 NQIT-DLAPLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP---LA 126
Query: 295 KLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSEN 354
L NL L L N + T + + LS+ +S +L L +N
Sbjct: 127 GLSNLQVLYLDLNQI---TNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN 183
Query: 355 NIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRL 414
I I L + L +N I+++ P N L
Sbjct: 184 KIS-DISPL---ASLPNLIEVHLKNNQISDVS--PLANT------------------SNL 219
Query: 415 QFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLG 474
+ +N T + + ++ L +P+ + ++ +S N ++W
Sbjct: 220 FIVTLTNQTITNQ---PVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTS 276
Query: 475 YLD 477
+++
Sbjct: 277 FIN 279
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 2e-14
Identities = 57/280 (20%), Positives = 112/280 (40%), Gaps = 18/280 (6%)
Query: 8 NVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLK 67
+ + +++ V +L +T+LS + E + L+NL + LK
Sbjct: 17 ALANAIKIAAGKSNVTDTVT--QADLDG-ITTLSAFGTGVTT--IEGVQYLNNLIGLELK 71
Query: 68 FNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASL 127
N ++ + P N T + L++SG +I L+ ++ L L+ P L
Sbjct: 72 DN-QITDLAPLKNLTK-ITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITDVTP--L 125
Query: 128 GNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISN 187
++ L VL L + +I P L+ L L + +G+ + NL++++ L +
Sbjct: 126 AGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVS-DLTPLANLSKLTTLKADD 182
Query: 188 NQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPS 247
N+++ I + L NL + L NN +S P L L + L++ +T + +
Sbjct: 183 NKIS-DISPL-ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNN 238
Query: 248 KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGI 287
+ + P++I + +L N S I
Sbjct: 239 NLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFI 278
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 8e-14
Identities = 58/296 (19%), Positives = 104/296 (35%), Gaps = 35/296 (11%)
Query: 248 KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHN 307
+ K+ + + + +L +T LS + I + L NL LEL N
Sbjct: 19 ANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTIEG---VQYLNNLIGLELKDN 73
Query: 308 SLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEV 367
+ T + +I L LS + + + LDL+ I P
Sbjct: 74 QI---TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLA---- 126
Query: 368 GKDTLSFLDLSHNFITEMKQIP-WKNLKYLKLQSNLLQGPLPVPP-PRLQFLLASNNQFT 425
G L L L N IT + + NL+YL + + + P+ +L L A +N+
Sbjct: 127 GLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNK-- 184
Query: 426 GEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISW-KNLGYLDLRSNLLQ 484
I I ++L +L ++L +N I+ + ++ NL + L + +
Sbjct: 185 ---ISDISPLASLP-----------NLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTIT 230
Query: 485 GPLLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFS 540
P +++ N G I D ++ L+ + I N S
Sbjct: 231 ---NQPVFYNNNLVVPNV-VKGPSGAPIAPATISDNGTYASPNLTWNLTSFINNVS 282
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 3e-10
Identities = 49/285 (17%), Positives = 98/285 (34%), Gaps = 45/285 (15%)
Query: 266 SSIFELANLT---YLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFP 322
+ IF L ++ +N + V A L + L + TT +
Sbjct: 10 NVIFPDPALANAIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGV---TTIEGVQYLN 63
Query: 323 QIFILSLSACNISAFPSFLRSLELAYLDLSENNID-----GQIPNWMWEVGKDTLSFLDL 377
+ L L I+ ++ L+LS N + + + + LDL
Sbjct: 64 NLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQS---------IKTLDL 114
Query: 378 SHNFITEMKQIPW-KNLKYLKLQSNLLQGPLPVPP-PRLQFLLASNNQFTGEIIQSICSS 435
+ IT++ + NL+ L L N + P+ LQ+L N Q + +
Sbjct: 115 TSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQ-----VSDLTPL 169
Query: 436 STLEIPSWISEIGKDSLSYLNLSHNFITKMKQIS-WKNLGYLDLRSNLLQG-PLLVPPSS 493
+ L L+ L N I+ + ++ NL + L++N + L S+
Sbjct: 170 ANLS-----------KLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSN 218
Query: 494 LRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGN 538
L ++ + N T + + +++ + + P I +
Sbjct: 219 LFIVTLTNQTITNQPVFYNNNLVVP--NVVKGPSGAPIAPATISD 261
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 3e-08
Identities = 43/209 (20%), Positives = 87/209 (41%), Gaps = 14/209 (6%)
Query: 6 VQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVR 65
VQ + L L L ++ + P LKNL+ +T L LS ++ I L +++ +
Sbjct: 59 VQYLNNLIGLELKDNQITDLAP--LKNLTK-ITELELSGNPLKN--VSAIAGLQSIKTLD 113
Query: 66 LKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPA 125
L ++ V P + ++ L+ L + + + + L +L+ L + P
Sbjct: 114 LTST-QITDVTPLAGLSN-LQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDLTP- 168
Query: 126 SLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDI 185
L N+++L L S I P L++L L +V L +N + N + + + +
Sbjct: 169 -LANLSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQIS-DVSPLANTSNLFIVTL 224
Query: 186 SNNQLTGSIPSHGSGLQNLAVLRLYNNTL 214
+N +T + + L V++ +
Sbjct: 225 TNQTITNQPVFYNNNLVVPNVVKGPSGAP 253
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 2e-19
Identities = 46/188 (24%), Positives = 69/188 (36%), Gaps = 12/188 (6%)
Query: 178 TRISRLDISNNQLTGSIPSHG-SGLQNLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSD 235
LD+S N L + S+ L VL L + TI + L L + L+
Sbjct: 28 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG 85
Query: 236 NQLTG-HLDAFPS-KSLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLASNNFSGIVEPYM 292
N + L AF SL+KL L S+ + L L L++A N P
Sbjct: 86 NPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144
Query: 293 LAKLVNLAALELSHN---SLSFGTTSKVNSSFPQIFILSLSACNISAFPSFL-RSLELAY 348
+ L NL L+LS N S+ ++ L LS ++ + + L
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKE 204
Query: 349 LDLSENNI 356
L L N +
Sbjct: 205 LALDTNQL 212
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 2e-13
Identities = 54/286 (18%), Positives = 88/286 (30%), Gaps = 92/286 (32%)
Query: 10 TKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIF-RLSNLQMVRLKF 68
+ L L + + + + + L L LS C IQ + + LS+L + L
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPE-LQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTG 85
Query: 69 N--SNL-SGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPA 125
N +L G F L L++L +
Sbjct: 86 NPIQSLALGAFS---------------------------GLSSLQKLVAVET-------- 110
Query: 126 SLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDI 185
L L + L + L++
Sbjct: 111 ------------------------------NLA--SLENFPIGH-------LKTLKELNV 131
Query: 186 SNNQLTGSIPSHG--SGLQNLAVLRLYNNTLSGTIPSWLFT-----LPLLRDIDLSDNQL 238
++N + S S L NL L L +N + +I L +DLS N +
Sbjct: 132 AHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPM 189
Query: 239 TG-HLDAFPSKSLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLASN 282
AF L++L L N+L S+P IF+ L +L + L +N
Sbjct: 190 NFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 9e-10
Identities = 56/304 (18%), Positives = 87/304 (28%), Gaps = 92/304 (30%)
Query: 186 SNNQLTGSIPSHGSGL-QNLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSDNQLTG-HL 242
IP L + L L N L + S+ F P L+ +DLS ++
Sbjct: 15 MELNFY-KIPD---NLPFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIED 69
Query: 243 DAFPS-KSLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLASNNFSGIVEPYMLAKLVNLA 300
A+ S L L LT N + S+ F L++L L N + + E + + L L
Sbjct: 70 GAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLK 127
Query: 301 ALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQI 360
L ++HN + + F L +LDLS N I
Sbjct: 128 ELNVAHNLIQSFKLPEY----------------------FSNLTNLEHLDLSSNKI---- 161
Query: 361 PNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLAS 420
+ L L + L L +L S
Sbjct: 162 ----QSIYCTDLRVL---------------HQMPLLNLSLDL-----------------S 185
Query: 421 NNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQ---ISWKNLGYLD 477
N I + + L L L N + + +L +
Sbjct: 186 LNPMN-------------FIQPGAFK--EIRLKELALDTNQLKSVPDGIFDRLTSLQKIW 230
Query: 478 LRSN 481
L +N
Sbjct: 231 LHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 2e-08
Identities = 47/237 (19%), Positives = 78/237 (32%), Gaps = 58/237 (24%)
Query: 7 QNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRL 66
+ +LQ+L L ++ T+ G ++L S L++L L+ IQ F
Sbjct: 49 FSFPELQVLDLSRCEIQTIEDGAYQSL-SHLSTLILTGNPIQ-SLALGAFS--------- 97
Query: 67 KFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPAS 126
L L++L + N
Sbjct: 98 --------------------------------------GLSSLQKLVAVETNLASLENFP 119
Query: 127 LGNVTQLAVLSLSFKSFSGHIPPSL-SNLHQLTDVDLGSNSF----DGQFPDIMNLTRIS 181
+G++ L L+++ P SNL L +DL SN + + ++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179
Query: 182 -RLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSDN 236
LD+S N + I L L L N L ++P +F L L+ I L N
Sbjct: 180 LSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 6e-05
Identities = 45/186 (24%), Positives = 66/186 (35%), Gaps = 47/186 (25%)
Query: 372 LSFLDLSHNFITEMKQIPW------KNLKYLKLQSNLLQGPLPV----PPPRLQFLLASN 421
L LDLS I I +L L L N +Q L + LQ L+A
Sbjct: 54 LQVLDLSRCEIQ---TIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVE 109
Query: 422 NQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQ----ISWKNLGYLD 477
+ S+ + + +L LN++HN I K + NL +LD
Sbjct: 110 TN-----LASL-ENFPIGHLK--------TLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155
Query: 478 LRSNLLQGPLLVPPSSLRVILIL----------NNQFTGEIIHSICDIIALDVLDLSNNR 527
L SN +Q + + LRV+ + N I I L L L N+
Sbjct: 156 LSSNKIQS---IYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQ 211
Query: 528 LSGTIP 533
L ++P
Sbjct: 212 LK-SVP 216
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 90.2 bits (223), Expect = 4e-19
Identities = 51/228 (22%), Positives = 88/228 (38%), Gaps = 18/228 (7%)
Query: 176 NLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSD 235
+ ++ +T ++ + L ++ + N+ + ++ + LP + + L+
Sbjct: 19 AFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNG 74
Query: 236 NQLTGHLDAFPS-KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLA 294
N+LT + + K+L L+L N++ + SS+ +L L LSL N S I L
Sbjct: 75 NKLT-DIKPLTNLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNGISDI-NG--LV 128
Query: 295 KLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSEN 354
L L +L L +N + T V S ++ LSL IS +L L LS+N
Sbjct: 129 HLPQLESLYLGNNKI---TDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN 185
Query: 355 NIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNL 402
I + G L L+L NL N
Sbjct: 186 ----HISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNT 229
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 75.1 bits (184), Expect = 2e-14
Identities = 55/288 (19%), Positives = 101/288 (35%), Gaps = 17/288 (5%)
Query: 8 NVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLK 67
+ L ++ V L+S + + + I + + I L N+ + L
Sbjct: 19 AFAETIKDNLKKKSVTDAVT--QNELNS-IDQIIANNSDI--KSVQGIQYLPNVTKLFLN 73
Query: 68 FNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASL 127
N L+ + P +N + L L + + L S+ +L+ L+ L L L
Sbjct: 74 GN-KLTDIKPLTNLKN-LGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNGISDING--L 127
Query: 128 GNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISN 187
++ QL L L + I LS L +L + L N + LT++ L +S
Sbjct: 128 VHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLSK 184
Query: 188 NQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPS 247
N ++ + + +GL+NL VL L++ + L + + +D L
Sbjct: 185 NHIS-DLRAL-AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDD 242
Query: 248 KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAK 295
K + + L F + A F G V +
Sbjct: 243 GDYEKPNVKWH-LPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEV 289
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 69.0 bits (168), Expect = 2e-12
Identities = 46/284 (16%), Positives = 97/284 (34%), Gaps = 56/284 (19%)
Query: 250 LRKLYLTNNRLHGSIPSSIF---ELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSH 306
+ + + + IF A +L + + V +L ++ + ++
Sbjct: 1 MGETITVSTPI-----KQIFPDDAFAETIKDNLKKKSVTDAVT---QNELNSIDQIIANN 52
Query: 307 NSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWE 366
+ + + + P + L L+ ++ L +L L EN I + +
Sbjct: 53 SDI---KSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIK-DLSS---L 105
Query: 367 VGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTG 426
L L L HN I+++ L +L P+L+ L NN+
Sbjct: 106 KDLKKLKSLSLEHNGISDIN-----GLVHL---------------PQLESLYLGNNK--- 142
Query: 427 EIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISW-KNLGYLDLRSNLLQG 485
I I S L L L+L N I+ + ++ L L L N +
Sbjct: 143 --ITDITVLSRLT-----------KLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD 189
Query: 486 -PLLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRL 528
L +L V+ + + + + I+ +++ + + ++ L
Sbjct: 190 LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 63.2 bits (153), Expect = 1e-10
Identities = 37/189 (19%), Positives = 73/189 (38%), Gaps = 26/189 (13%)
Query: 345 ELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPW-KNLKYLKLQSNLL 403
E +L + ++ + +++ + +++ I ++ I + N+ L L N L
Sbjct: 22 ETIKDNLKKKSVTDAVTQ----NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL 77
Query: 404 QGPLPVPP-PRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFI 462
P+ L +L N+ I+ + S L L L+L HN I
Sbjct: 78 TDIKPLTNLKNLGWLFLDENK-----IKDLSSLKDL-----------KKLKSLSLEHNGI 121
Query: 463 TKMKQIS-WKNLGYLDLRSNLLQG-PLLVPPSSLRVILILNNQFTGEIIHSICDIIALDV 520
+ + + L L L +N + +L + L + + +NQ + I + + L
Sbjct: 122 SDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD--IVPLAGLTKLQN 179
Query: 521 LDLSNNRLS 529
L LS N +S
Sbjct: 180 LYLSKNHIS 188
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 86.9 bits (215), Expect = 6e-19
Identities = 62/310 (20%), Positives = 102/310 (32%), Gaps = 33/310 (10%)
Query: 117 CNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMN 176
CNF P L + + L + D+ QF DI+
Sbjct: 15 CNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLG--------QFTDIIK 66
Query: 177 LTRISRLDISNNQLTGSIPSHGS---GLQNLAVLRLYNNTLSGTIPSWLF--TLPLLRDI 231
+ RL + ++ I G+ L L L N ++GT P L T P L +
Sbjct: 67 SLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNIL 126
Query: 232 DLSDNQLTG------HLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFS 285
+L + L + L+ L + + L+ L L+ N
Sbjct: 127 NLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL 186
Query: 286 G---IVEPYMLAKLVNLAALELSHNSLS--FGTTSKVNSSFPQIFILSLSACNISAFP-- 338
G ++ K L L L + + G S + ++ Q+ L LS ++
Sbjct: 187 GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246
Query: 339 -SFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEM-KQIPWKNLKYL 396
S +L L+LS + Q+P + LS LDLS+N + + L
Sbjct: 247 PSCDWPSQLNSLNLSFTGLK-QVPKGLPA----KLSVLDLSYNRLDRNPSPDELPQVGNL 301
Query: 397 KLQSNLLQGP 406
L+ N
Sbjct: 302 SLKGNPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 86.9 bits (215), Expect = 6e-19
Identities = 51/296 (17%), Positives = 89/296 (30%), Gaps = 23/296 (7%)
Query: 77 PRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVL 136
P+ +W+S CL + G S+ L + F + + ++ +L V
Sbjct: 20 PKPDWSSAFNCLGAADVELYGGG-RSLEYLLKRVDTEADLGQFTDIIKSL--SLKRLTVR 76
Query: 137 SLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD---IMNLTRISRLDISNNQLTGS 193
+ S + + L ++ L + G P ++ L++ N
Sbjct: 77 AARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR 136
Query: 194 IPSHGS----GLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPS-- 247
L VL + + P L +DLSDN G +
Sbjct: 137 DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196
Query: 248 ----KSLRKLYLTNNRLH---GSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLA 300
+L+ L L N + G + L L L+ N+ L
Sbjct: 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256
Query: 301 ALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNI 356
+L LS L ++ +L LS + PS ++ L L N
Sbjct: 257 SLNLSFTGL----KQVPKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPF 308
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 75.7 bits (186), Expect = 3e-15
Identities = 55/282 (19%), Positives = 88/282 (31%), Gaps = 49/282 (17%)
Query: 228 LRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGI 287
+R + L G L L++L L N + G+ P + E L N S
Sbjct: 75 VRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA 134
Query: 288 VEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELA 347
LA+L L S++ Q L+ S + FP+ L+
Sbjct: 135 TRDAWLAELQQWLKPGLKVLSIA------------QAHSLNFSCEQVRVFPA------LS 176
Query: 348 YLDLSENNIDGQIP--NWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQG 405
LDLS+N G+ + + + TL L L + + +
Sbjct: 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR--------- 227
Query: 406 PLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM 465
+LQ L S+N C + L+ LNLS + ++
Sbjct: 228 ------VQLQGLDLSHNSLRDAAGAPSCDWPS-------------QLNSLNLSFTGLKQV 268
Query: 466 KQISWKNLGYLDLRSNLLQG-PLLVPPSSLRVILILNNQFTG 506
+ L LDL N L P + + + N F
Sbjct: 269 PKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 75.3 bits (185), Expect = 5e-15
Identities = 43/238 (18%), Positives = 70/238 (29%), Gaps = 30/238 (12%)
Query: 35 SSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTR 94
S L L+L + G P + + + L +
Sbjct: 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDA---------------- 138
Query: 95 FSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHI------- 147
+ +L L+ L ++Q + F + L+ L LS G
Sbjct: 139 WLAELQQ--WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196
Query: 148 PPSLSNLHQLTDVDLGSNSFDGQFP-DIMNLTRISRLDISNNQLTGSIPSHG-SGLQNLA 205
P L L + G + G ++ LD+S+N L + + L
Sbjct: 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256
Query: 206 VLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGS 263
L L L +P L L +DLS N+L + + L L N S
Sbjct: 257 SLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 2e-12
Identities = 45/222 (20%), Positives = 71/222 (31%), Gaps = 17/222 (7%)
Query: 8 NVTKLQLLFLDYVDMSTVVPGTLKNLS-SSLTSLSLSYCRIQGE--FPENIFRLSNLQMV 64
++ LQ L L+ ++++ P L + L L+L + + + +
Sbjct: 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLK 152
Query: 65 RLKFNSNLSGVFPRSNWTSP--LRCLDVSGTRFSGQ--LPDSIC--NLRHLRELHLSQCN 118
L S F L LD+S G+ L ++C L+ L L
Sbjct: 153 VLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG 212
Query: 119 F---YGFLPASLGNVTQLAVLSLSFKSFSGHIPPSL-SNLHQLTDVDLGSNSFDGQFPDI 174
G A QL L LS S QL ++L +
Sbjct: 213 METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL 272
Query: 175 MNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSG 216
++S LD+S N+L PS L + L L N
Sbjct: 273 --PAKLSVLDLSYNRLD-RNPSPD-ELPQVGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 5e-08
Identities = 42/234 (17%), Positives = 70/234 (29%), Gaps = 48/234 (20%)
Query: 318 NSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDL 377
S + + ++ F ++SL L L + I +I L L +
Sbjct: 42 GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGA-------LRVLGI 94
Query: 378 SHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPP-----PRLQFLLASNNQFTGEIIQSI 432
S L+ L L++ + G P P P L L N +
Sbjct: 95 SG-------------LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR----- 136
Query: 433 CSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISW---KNLGYLDLRSNLLQGPLLV 489
+ E+ W+ L L+++ L LDL N G +
Sbjct: 137 -DAWLAELQQWLKP----GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191
Query: 490 PPS-------SLRVILILNNQFT---GEIIHSICDIIALDVLDLSNNRLSGTIP 533
+ +L+V+ + N G + L LDLS+N L
Sbjct: 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 86.9 bits (215), Expect = 3e-18
Identities = 57/300 (19%), Positives = 104/300 (34%), Gaps = 40/300 (13%)
Query: 255 LTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTT 314
N + G+ +L N + V + + L+L+ +L +
Sbjct: 17 SFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNL----S 72
Query: 315 SKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSF 374
S ++ PQI +L ++ + + P SLE YLD +N + +P +L
Sbjct: 73 SLPDNLPPQITVLEITQNALISLPELPASLE--YLDACDNRLS-TLPELP-----ASLKH 124
Query: 375 LDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICS 434
LD+ +N +T + ++P L+Y+ +N L LP P L+ L NNQ T
Sbjct: 125 LDVDNNQLTMLPELP-ALLEYINADNNQLTM-LPELPTSLEVLSVRNNQLT--------- 173
Query: 435 SSTLEIPSWISEIGKDSLSYLNLSHNFITK------MKQISWKNLGYLDLRSNLLQG--P 486
+P SL L++S N + S + + R N +
Sbjct: 174 ----FLPELPE-----SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPE 224
Query: 487 LLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSPWCQTK 546
++ I++ +N + I S+ A S + + P
Sbjct: 225 NILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAV 284
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 85.4 bits (211), Expect = 9e-18
Identities = 53/322 (16%), Positives = 98/322 (30%), Gaps = 47/322 (14%)
Query: 193 SIPSHGSGLQNLAVLRLYNN--TLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSL 250
SI + +L+ YN S + N+ L
Sbjct: 2 SIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQF 61
Query: 251 RKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLS 310
+L L L S+P ++ +T L + N + +L L+ N L
Sbjct: 62 SELQLNRLNLS-SLPDNLPP--QITVLEITQNALISL-----PELPASLEYLDACDNRL- 112
Query: 311 FGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKD 370
S + + L + ++ P LE Y++ N + +P
Sbjct: 113 ----STLPELPASLKHLDVDNNQLTMLPELPALLE--YINADNNQL-TMLPELP-----T 160
Query: 371 TLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLA-------SNNQ 423
+L L + +N +T + ++P ++L+ L + +NLL+ LP P R N+
Sbjct: 161 SLEVLSVRNNQLTFLPELP-ESLEALDVSTNLLES-LPAVPVRNHHSEETEIFFRCRENR 218
Query: 424 FTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLL 483
T IP I + D + L N ++ + S
Sbjct: 219 IT-------------HIPENILSL--DPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPR 263
Query: 484 QGPLLVPPSSLRVILILNNQFT 505
+ + L + T
Sbjct: 264 IYFSMSDGQQNTLHRPLADAVT 285
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 83.5 bits (206), Expect = 4e-17
Identities = 52/309 (16%), Positives = 101/309 (32%), Gaps = 33/309 (10%)
Query: 2 MEALVQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNL 61
+ K L + + +++ L N + L L+ + P+N+ +
Sbjct: 29 YFSAWDKWEKQALPGENRNEAVSLLKECLIN---QFSELQLNRLNLS-SLPDNLP--PQI 82
Query: 62 QMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYG 121
L+ N P + L LD R S LP+ +L+HL +
Sbjct: 83 T--VLEITQNALISLPEL--PASLEYLDACDNRLS-TLPELPASLKHL---DVDNNQL-T 133
Query: 122 FLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIM-NLTRI 180
LP L ++ + +P ++L L + +N P++ +L
Sbjct: 134 MLPELPAL---LEYINADNNQLT-MLPELPTSLEVL---SVRNNQL-TFLPELPESLEA- 184
Query: 181 SRLDISNNQLTGSIPSHGSGLQNL----AVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDN 236
LD+S N L S+P+ + R N ++ IP + +L I L DN
Sbjct: 185 --LDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDN 240
Query: 237 QLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKL 296
L+ + S+ + R++ S+ + + F + +
Sbjct: 241 PLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIW 300
Query: 297 VNLAALELS 305
E +
Sbjct: 301 HAFEHEEHA 309
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 1e-17
Identities = 38/189 (20%), Positives = 75/189 (39%), Gaps = 11/189 (5%)
Query: 100 PDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTD 159
PDS + L Q + A + ++T + + +++ +G + H + D
Sbjct: 18 PDS--TFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG-----IEYAHNIKD 70
Query: 160 VDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIP 219
+ + + + I L+ + RL I +T + SGL +L +L + ++ +I
Sbjct: 71 LTINNIHA-TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL 129
Query: 220 SWLFTLPLLRDIDLSDNQLTGHLDAFPS-KSLRKLYLTNNRLHGSIPSSIFELANLTYLS 278
+ + TLP + IDLS N + + L+ L + + +H I + L L
Sbjct: 130 TKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLY 187
Query: 279 LASNNFSGI 287
S G
Sbjct: 188 AFSQTIGGK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 1e-11
Identities = 24/217 (11%), Positives = 66/217 (30%), Gaps = 37/217 (17%)
Query: 171 FPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRD 230
PD + + + + +L + L N ++ + ++D
Sbjct: 17 IPD-STFKAYLNGLLGQSSTANITEAQ---MNSLTYITLANINVTDLTG--IEYAHNIKD 70
Query: 231 IDLSDNQLTGHLDAFPS-KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVE 289
+ +++ T + + +L +L + + ++ L +LT L ++ +
Sbjct: 71 LTINNIHAT-NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD-DSI 128
Query: 290 PYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYL 349
+ L + +++LS+N T + P++ L++ + + +
Sbjct: 129 LTKINTLPKVNSIDLSYNGAI--TDIMPLKTLPELKSLNIQFDGVHDY-RGIEDFP---- 181
Query: 350 DLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMK 386
L+ L I K
Sbjct: 182 ---------------------KLNQLYAFSQTIGGKK 197
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 2e-11
Identities = 22/132 (16%), Positives = 49/132 (37%), Gaps = 4/132 (3%)
Query: 85 LRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFS 144
++ L ++ + + I L +L L + + +L +T L +L +S +
Sbjct: 68 IKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125
Query: 145 GHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNL 204
I ++ L ++ +DL N + L + L+I + + L
Sbjct: 126 DSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGI--EDFPKL 183
Query: 205 AVLRLYNNTLSG 216
L ++ T+ G
Sbjct: 184 NQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 4e-09
Identities = 35/188 (18%), Positives = 74/188 (39%), Gaps = 13/188 (6%)
Query: 245 FPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALEL 304
P + + + + ++ +LTY++LA+ N + + + N+ L +
Sbjct: 17 IPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG---IEYAHNIKDLTI 73
Query: 305 SHNSLSFGTTSKVNSSFPQIFILSLSACNIS-AFPSFLRSLE-LAYLDLSENNIDGQIPN 362
++ T S + L + +++ L L L LD+S + D I
Sbjct: 74 NNIHA---TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130
Query: 363 WMWEVGKDTLSFLDLSHN-FITEMKQI-PWKNLKYLKLQSNLLQGPLPVPP-PRLQFLLA 419
+ ++ +DLS+N IT++ + LK L +Q + + + P+L L A
Sbjct: 131 KI--NTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYA 188
Query: 420 SNNQFTGE 427
+ G+
Sbjct: 189 FSQTIGGK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-05
Identities = 19/91 (20%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 450 DSLSYLNLSHNFITKMKQISW-KNLGYLDLRSNLLQG-PLLVPPSSLRVILILNNQFTGE 507
+SL+Y+ L++ +T + I + N+ L + + + S+L + I+ T +
Sbjct: 44 NSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSD 103
Query: 508 IIHSICDIIALDVLDLSNNRLSGTIPKCIGN 538
I ++ + +L +LD+S++ +I I
Sbjct: 104 KIPNLSGLTSLTLLDISHSAHDDSILTKINT 134
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 1e-04
Identities = 31/168 (18%), Positives = 66/168 (39%), Gaps = 23/168 (13%)
Query: 370 DTLSFLDLSHNFITEMKQIPW-KNLKYLKLQSNLLQGPLPVPP-PRLQFLLASNNQFTGE 427
++L+++ L++ +T++ I + N+K L + + P+ L+ L T +
Sbjct: 44 NSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSD 103
Query: 428 IIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFIT--KMKQISW-KNLGYLDLRSNLLQ 484
I ++ S L SL+ L++SH+ + +I+ + +DL N
Sbjct: 104 KIPNL---SGLT-----------SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149
Query: 485 GPL--LVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSG 530
+ L L+ + I + I D L+ L + + G
Sbjct: 150 TDIMPLKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIGG 195
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 84.2 bits (208), Expect = 3e-17
Identities = 81/421 (19%), Positives = 156/421 (37%), Gaps = 44/421 (10%)
Query: 156 QLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLS 215
+ VD + + D+ T+ L +S N ++ S L L VLRL +N +
Sbjct: 32 LESMVDYSNRNLTHVPKDLPPRTKA--LSLSQNSISELRMPDISFLSELRVLRLSHNRIR 89
Query: 216 GTIPSWLF-TLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFE-LAN 273
++ +F L +D+S N+L ++ P SLR L L+ N F L
Sbjct: 90 -SLDFHVFLFNQDLEYLDVSHNRLQ-NISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTK 147
Query: 274 LTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACN 333
LT+L L++ F + + ++ L+L + G T + + L +
Sbjct: 148 LTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS 207
Query: 334 ISAFPSFLRSLELAYLDLSENNID----GQIPNWMWEVGKD------TLSFLDLSHNFIT 383
+ + + L +L LS ++ ++ ++ E+ + TL ++ +
Sbjct: 208 LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV 267
Query: 384 EMKQIPW-KNLKYLKLQSNLLQGPLPVPPPR--------LQFLLASNNQFTGEIIQSICS 434
++ Q W + ++YL + + + + L N F
Sbjct: 268 KLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSV 327
Query: 435 SSTLEIPS-WISEIGK---------DSLSYLNLSHNFITKMKQ---ISWKNLGYLDLRSN 481
+ + I IS+ S ++LN + N T + K L L L+ N
Sbjct: 328 FAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN 387
Query: 482 LLQ-----GPLLVPPSSLRVILILNNQFTGEIIHSICDIIA-LDVLDLSNNRLSGTIPKC 535
L+ + SSL + + N C + VL+LS+N L+G++ +C
Sbjct: 388 GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC 447
Query: 536 I 536
+
Sbjct: 448 L 448
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 83.8 bits (207), Expect = 4e-17
Identities = 80/432 (18%), Positives = 138/432 (31%), Gaps = 61/432 (14%)
Query: 135 VLSLSFKSFSGHIPPS-LSNLHQLTDVDLGSNSF----DGQFPDIMNLTRISRLDISNNQ 189
LSLS S S + +S L +L + L N F + + LD+S+N+
Sbjct: 56 ALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVF---LFNQDLEYLDVSHNR 111
Query: 190 LTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSDNQLT-GHLDAFPS 247
L +I + +L L L N F L L + LS + L
Sbjct: 112 LQ-NISCCP--MASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAH 168
Query: 248 KSLRKLYLTNNRLHGS-IPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSH 306
L + L H + ++ N T L L + S + + L L+LS+
Sbjct: 169 LHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQ-VNMSVNALGHLQLSN 227
Query: 307 NSLSFGTTSKVNSSFPQIFI-----------LSLSACNISAFPSFLRSLELAYLDLSENN 355
L+ ++ + ++ + + F + YL++
Sbjct: 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287
Query: 356 IDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPW------KNLKYLKLQSNLLQGPLPV 409
I +I + + L L + H + L + V
Sbjct: 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV 347
Query: 410 P---PPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMK 466
P FL + N FT + + CS+ L L L N +
Sbjct: 348 CPPSPSSFTFLNFTQNVFT-DSVFQGCSTLK-------------RLQTLILQRNGLKNFF 393
Query: 467 QIS-----WKNLGYLDLRSNLLQ----GPLLVPPSSLRVILILNNQFTGEIIHSICDIIA 517
+++ +L LD+ N L S+ V+ + +N TG + +
Sbjct: 394 KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPK 451
Query: 518 LDVLDLSNNRLS 529
+ VLDL NNR+
Sbjct: 452 VKVLDLHNNRIM 463
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 1e-13
Identities = 106/499 (21%), Positives = 171/499 (34%), Gaps = 62/499 (12%)
Query: 19 YVDMS----TVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFN--SNL 72
VD S T VP K+L +LSLS I +I LS L+++RL N +L
Sbjct: 35 MVDYSNRNLTHVP---KDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL 91
Query: 73 -SGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLP--ASLGN 129
VF L LDVS R + + LR L LS N + LP GN
Sbjct: 92 DFHVFLF---NQDLEYLDVSHNRLQN-ISCC--PMASLRHLDLSF-NDFDVLPVCKEFGN 144
Query: 130 VTQLAVLSLSFKSFSGHIPPSLSNLHQLTD-VDLGSNSFDGQFPDIMNLTRISRLDISNN 188
+T+L L LS F +++LH +DL S G + + + + L + +
Sbjct: 145 LTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFH 204
Query: 189 QLTGSIPSHGSGLQNLAVLRLYNNTLSG-------TIPSWLFTLPLLR-----DIDLSDN 236
+ + L L+L N L+ T S L P L I+ +
Sbjct: 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264
Query: 237 QLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLA----SNNFSGIVEPYM 292
F + + L + N + I F + SL N + +
Sbjct: 265 CSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEAL 324
Query: 293 LAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPS--FLRSLELAYLD 350
+ + LS + F S L+ + + L L
Sbjct: 325 YSVFAEMNIKMLSISDTPF-IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLI 383
Query: 351 LSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEM---KQIPW-KNLKYLKLQSNLLQ-G 405
L N + + +L LD+S N + + W +++ L L SN+L
Sbjct: 384 LQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS 443
Query: 406 PLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM 465
PP+++ L NN+ IP ++ + +L LN++ N + +
Sbjct: 444 VFRCLPPKVKVLDLHNNRIM-------------SIPKDVTHLQ--ALQELNVASNQLKSV 488
Query: 466 KQ---ISWKNLGYLDLRSN 481
+L Y+ L N
Sbjct: 489 PDGVFDRLTSLQYIWLHDN 507
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 71.1 bits (174), Expect = 3e-13
Identities = 50/329 (15%), Positives = 96/329 (29%), Gaps = 29/329 (8%)
Query: 3 EALVQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIF-RLSNL 61
+ LL L + +L+ ++++ L + L +L
Sbjct: 164 LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHL 223
Query: 62 QMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPD-------SICNLRHLRELHL 114
Q+ +K N ++ T + R + L++
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283
Query: 115 SQCNFYG-----FLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSN---S 166
S + L + + + F S ++ L +
Sbjct: 284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343
Query: 167 FDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLP 226
P + + L+ + N T S+ S L+ L L L N L
Sbjct: 344 IHMVCPPS--PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTK 400
Query: 227 LLRDIDLSDNQLT----GHLDAFPS--KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLA 280
+ ++ D L D + +S+ L L++N L GS+ + + L L
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLH 458
Query: 281 SNNFSGIVEPYMLAKLVNLAALELSHNSL 309
+N I P + L L L ++ N L
Sbjct: 459 NNRIMSI--PKDVTHLQALQELNVASNQL 485
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 2e-06
Identities = 30/175 (17%), Positives = 59/175 (33%), Gaps = 11/175 (6%)
Query: 10 TKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRL--- 66
+ L + V L L +L L ++ F + N+ +
Sbjct: 353 SSFTFLNFTQNVFTDSVFQGCSTLKR-LQTLILQRNGLK-NFFKVALMTKNMSSLETLDV 410
Query: 67 KFNSNLSGVFPRS-NWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPA 125
NS S + R+ W + L++S +G + + ++ L L +P
Sbjct: 411 SLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRI-MSIPK 467
Query: 126 SLGNVTQLAVLSLSFKSFSGHIPP-SLSNLHQLTDVDLGSNSFDGQFPDIMNLTR 179
+ ++ L L+++ +P L L + L N +D P I L+
Sbjct: 468 DVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSE 521
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 81.0 bits (200), Expect = 9e-17
Identities = 40/217 (18%), Positives = 73/217 (33%), Gaps = 16/217 (7%)
Query: 146 HIPP-SLSNLHQLTDVDLGSNSFDGQFPD--IMNLTRISRLDISN-NQLTGSIPSHG-SG 200
I + S L +++ N NL ++ + I N L I
Sbjct: 44 VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQN 102
Query: 201 LQNLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSDN-QLTG-HLDAFP--SKSLRKLYL 255
L NL L + N + +P +D+ DN + ++F S L+L
Sbjct: 103 LPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL 161
Query: 256 TNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTS 315
N + I +S F L L+L+ NN + + L++S + S
Sbjct: 162 NKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS-LPS 219
Query: 316 KVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLS 352
+ ++ S N+ P+ + + L L+
Sbjct: 220 YGLENLKKLRARSTY--NLKKLPTLEKLVALMEASLT 254
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 80.3 bits (198), Expect = 2e-16
Identities = 54/253 (21%), Positives = 97/253 (38%), Gaps = 23/253 (9%)
Query: 183 LDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSDNQLTGH 241
+++T IPS +N LR L I F+ L I++S N +
Sbjct: 14 FLCQESKVT-EIPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEV 69
Query: 242 L--DAFPS-KSLRKLYLTN-NRLHGSIPSSIFE-LANLTYLSLASNNFSGIVEPYMLAKL 296
+ D F + L ++ + N L I F+ L NL YL +++ +
Sbjct: 70 IEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHL-PDVHKIHS 127
Query: 297 VNLAALELSHN----SLSFGTTSKVNSSFPQIFILSLSACNISAFPS-FLRSLELAYLDL 351
+ L++ N ++ + ++ + IL L+ I + +L L+L
Sbjct: 128 LQKVLLDIQDNINIHTIERNSFVGLSF---ESVILWLNKNGIQEIHNSAFNGTQLDELNL 184
Query: 352 SENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQS--NLLQGPLPV 409
S+NN ++PN ++ G LD+S I + +NLK L+ +S NL + P
Sbjct: 185 SDNNNLEELPNDVF-HGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLE 243
Query: 410 PPPRLQFLLASNN 422
L +
Sbjct: 244 KLVALMEASLTYP 256
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 1e-15
Identities = 46/266 (17%), Positives = 85/266 (31%), Gaps = 38/266 (14%)
Query: 85 LRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPAS-LGNVTQLAVLSLSFKSF 143
L T+ + L ++ +SQ + + A N+ +L +
Sbjct: 32 AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI------- 84
Query: 144 SGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPS-HGSGLQ 202
+ + L ++ +F L + L ISN + +P H
Sbjct: 85 ------RIEKANNLLYIN--PEAFQN-------LPNLQYLLISNTGIK-HLPDVHKIHSL 128
Query: 203 NLAVLRLYNNTLSGTIPSWLFT--LPLLRDIDLSDNQLTG-HLDAFPSKSLRKLYLT-NN 258
+L + +N TI F + L+ N + H AF L +L L+ NN
Sbjct: 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNN 188
Query: 259 RLHGSIPSSIFE-LANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKV 317
L +P+ +F + L ++ + Y L L L A +
Sbjct: 189 NLE-ELPNDVFHGASGPVILDISRTRIHSL-PSYGLENLKKLRARSTYNL-----KKLPT 241
Query: 318 NSSFPQIFILSLS-ACNISAFPSFLR 342
+ SL+ + AF ++ R
Sbjct: 242 LEKLVALMEASLTYPSHCCAFANWRR 267
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 3e-13
Identities = 41/255 (16%), Positives = 78/255 (30%), Gaps = 36/255 (14%)
Query: 12 LQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFR-LSNLQMVRLKFNS 70
L + + G L + +S + ++F L L +R++ +
Sbjct: 32 AIELRFVLTKLRVIQKGAFSGFGD-LEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90
Query: 71 NLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSIC-NLRHLRELHLSQCNFYGFLPASLGN 129
NL + NL +L+ L +S +
Sbjct: 91 NLL------------------------YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 126
Query: 130 VTQLAVLSLSFKSFSGHIPP-SLSNL-HQLTDVDLGSNSFDGQFPDIMNLTRISRLDIS- 186
Q +L + I S L + + L N N T++ L++S
Sbjct: 127 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSD 186
Query: 187 NNQLTGSIPSHG-SGLQNLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSDNQLTGHLDA 244
NN L +P+ G +L + + ++PS+ L LR + + L+
Sbjct: 187 NNNLE-ELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLKKLPTLEK 244
Query: 245 FPSKSLRKLYLTNNR 259
+L + LT
Sbjct: 245 LV--ALMEASLTYPS 257
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 68.3 bits (167), Expect = 1e-12
Identities = 49/283 (17%), Positives = 94/283 (33%), Gaps = 47/283 (16%)
Query: 229 RDIDLSDNQLTGHLDAFPS---KSLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLASNNF 284
R ++++T PS ++ +L +L I F +L + ++ N+
Sbjct: 12 RVFLCQESKVT----EIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDV 66
Query: 285 SGIVEPYMLAKLVNLAALELSH-NSLSFGTTSKVNSSFPQIFILSLSACNISAFP--SFL 341
++E + + L L + + N+L + + + P + L +S I P +
Sbjct: 67 LEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLPNLQYLLISNTGIKHLPDVHKI 125
Query: 342 RSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSN 401
SL+ LD+ +N I + L L+ N I E I +L
Sbjct: 126 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE---IHNSAFNGTQL--- 179
Query: 402 LLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNF 461
+ L+ NN ++ + + L++S
Sbjct: 180 ------------DELNLSDNNN-----LEELPNDVFHGASG---------PVILDISRTR 213
Query: 462 ITKMKQISWKNLGYLDLRS--NLLQGPLLVPPSSLRVILILNN 502
I + +NL L RS NL + P L +L +
Sbjct: 214 IHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYP 256
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 2e-16
Identities = 51/233 (21%), Positives = 89/233 (38%), Gaps = 28/233 (12%)
Query: 176 NLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSD 235
+ ++ +T ++ + L ++ + N+ + ++ + LP + + L+
Sbjct: 22 AFAETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNG 77
Query: 236 NQLTGHLDAFPS-KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLA 294
N+LT + + K+L L+L N++ + SS+ +L L LSL N S I L
Sbjct: 78 NKLT-DIKPLANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGISDI-NG--LV 131
Query: 295 KLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSEN 354
L L +L L +N + T V S ++ LSL IS +L L LS+N
Sbjct: 132 HLPQLESLYLGNNKI---TDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKN 188
Query: 355 NID-----GQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNL 402
+I + N L L+L NL N
Sbjct: 189 HISDLRALAGLKN---------LDVLELFSQECLNKPINHQSNLVVPNTVKNT 232
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 2e-15
Identities = 57/292 (19%), Positives = 104/292 (35%), Gaps = 32/292 (10%)
Query: 151 LSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLY 210
+ +L S L I ++ +N+ + S+ L N+ L L
Sbjct: 20 DDAFAETIKDNLKKKSVT-DAVTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLN 76
Query: 211 NNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPS-KSLRKLYLTNNRLHGSIPSSIF 269
N L+ P L L L + L +N++ L + K L+ L L +N + S + +
Sbjct: 77 GNKLTDIKP--LANLKNLGWLFLDENKVK-DLSSLKDLKKLKSLSLEHNGI--SDINGLV 131
Query: 270 ELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSL 329
L L L L +N + I L++L L L L N + + + ++ L L
Sbjct: 132 HLPQLESLYLGNNKITDI-TV--LSRLTKLDTLSLEDNQI---SDIVPLAGLTKLQNLYL 185
Query: 330 SACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWE-VGKDTLSFLD--------LSHN 380
S +IS + L L+L + N V +T+ D +S +
Sbjct: 186 SKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDD 245
Query: 381 FITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSI 432
E + W ++ S + P+ + + +F G + Q +
Sbjct: 246 GDYEKPNVKWHLPEFTNEVSFIFYQPVTIGK--------AKARFHGRVTQPL 289
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 2e-11
Identities = 53/282 (18%), Positives = 98/282 (34%), Gaps = 17/282 (6%)
Query: 8 NVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLK 67
+ L ++ V L+S + + + I+ + I L N+ + L
Sbjct: 22 AFAETIKDNLKKKSVTDAVT--QNELNS-IDQIIANNSDIKSV--QGIQYLPNVTKLFLN 76
Query: 68 FNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASL 127
N L+ + P +N + L L + + S+ +L+ L+ L L L
Sbjct: 77 GN-KLTDIKPLANLKN-LGWLFLDENKVKD--LSSLKDLKKLKSLSLEHNGISDI--NGL 130
Query: 128 GNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISN 187
++ QL L L + I LS L +L + L N + LT++ L +S
Sbjct: 131 VHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS-DIVPLAGLTKLQNLYLSK 187
Query: 188 NQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPS 247
N ++ + + +GL+NL VL L++ + L + + +D L
Sbjct: 188 NHIS-DLRAL-AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDD 245
Query: 248 KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVE 289
K + + F + A F G V
Sbjct: 246 GDYEKPNVKWHLPE-FTNEVSFIFYQPVTIGKAKARFHGRVT 286
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 1e-09
Identities = 49/287 (17%), Positives = 97/287 (33%), Gaps = 38/287 (13%)
Query: 252 KLYLTNNRLHGSIPSSIFELANLT---YLSLASNNFSGIVEPYMLAKLVNLAALELSHNS 308
+ + IF +L + + V +L ++ + +++
Sbjct: 6 ETITVPTPI-----KQIFSDDAFAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSD 57
Query: 309 LSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVG 368
+ + + P + L L+ ++ L +L L EN + + +
Sbjct: 58 I---KSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVK-DLSSLK---D 110
Query: 369 KDTLSFLDLSHNFITEMKQI-PWKNLKYLKLQSNLLQGPLPVPP-PRLQFLLASNNQFTG 426
L L L HN I+++ + L+ L L +N + + +L L +NQ
Sbjct: 111 LKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQ--- 167
Query: 427 EIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISW-KNLGYLDLRSNLLQG 485
I I + L L L LS N I+ ++ ++ KNL L+L S
Sbjct: 168 --ISDIVPLAGLT-----------KLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLN 214
Query: 486 PLLVPPSSLRVILILNNQFTGEI-IHSICDIIALDVLDLSNNRLSGT 531
+ S+L V + N + I D + ++ + T
Sbjct: 215 KPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFT 261
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 2e-16
Identities = 41/163 (25%), Positives = 65/163 (39%), Gaps = 8/163 (4%)
Query: 150 SLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRL 209
+S + +V+ + PD+ + L +S N L + L L L
Sbjct: 5 EVSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 210 YNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPS-KSLRKLYLTNNRLHGSIPSSI 268
L+ + TLP+L +DLS NQL + +L L ++ NRL S+P
Sbjct: 63 DRAELT-KLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-SLPLGA 119
Query: 269 FE-LANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLS 310
L L L L N + P +L L L L++N+L+
Sbjct: 120 LRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANNNLT 161
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 6e-12
Identities = 54/232 (23%), Positives = 74/232 (31%), Gaps = 59/232 (25%)
Query: 32 NLSSSLTSLSLSYCRIQGEFPENIF-RLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDV 90
+L T L LS + F + L + L L L V
Sbjct: 28 DLPKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAE--------------LTKLQV 72
Query: 91 SGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPS 150
G L L L LS N LP + L VL +SF
Sbjct: 73 DG------------TLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSF---------- 109
Query: 151 LSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHG--SGLQNLAVLR 208
N +LT L + G L + L + N+L ++P G + L L
Sbjct: 110 --N--RLT--SLPLGALRG-------LGELQELYLKGNELK-TLP-PGLLTPTPKLEKLS 154
Query: 209 LYNNTLSGTIPSWLFT-LPLLRDIDLSDNQLTG-HLDAFPSKSLRKLYLTNN 258
L NN L+ +P+ L L L + L +N L F S L +L N
Sbjct: 155 LANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 1e-09
Identities = 49/212 (23%), Positives = 78/212 (36%), Gaps = 35/212 (16%)
Query: 228 LRDIDLSDNQLTGHLDAFPS---KSLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLASNN 283
+++ LT A P K L+L+ N L + + LT L+L
Sbjct: 12 HLEVNCDKRNLT----ALPPDLPKDTTILHLSENLL-YTFSLATLMPYTRLTQLNLDRAE 66
Query: 284 FSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPS--FL 341
+ + L L L+LSHN L + + + P + +L +S +++ P
Sbjct: 67 LTKLQV---DGTLPVLGTLDLSHNQLQ--SLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 342 RSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPW------KNLKY 395
EL L L N + +P + L L L++N +TE +P +NL
Sbjct: 122 GLGELQELYLKGNELK-TLPPGLLT-PTPKLEKLSLANNNLTE---LPAGLLNGLENLDT 176
Query: 396 LKLQSNLLQGPLPVPP-----PRLQFLLASNN 422
L LQ N L +P L F N
Sbjct: 177 LLLQENSLYT---IPKGFFGSHLLPFAFLHGN 205
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 4e-16
Identities = 35/214 (16%), Positives = 67/214 (31%), Gaps = 18/214 (8%)
Query: 106 LRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPP-SLSNLHQLTDVDLGS 164
+ L L + + + N+ ++ + +S + S NL ++T +++ +
Sbjct: 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89
Query: 165 NSF-----DGQFPDIMNLTRISRLDISNNQLTGSIPSHG--SGLQNLAVLRLYNNTLSGT 217
L + L I N L P +L + +N +
Sbjct: 90 TRNLTYIDPDAL---KELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTS 145
Query: 218 IPSWLFT--LPLLRDIDLSDNQLTG-HLDAFPSKSLRKLYLTNNRLHGSIPSSIFE--LA 272
IP F + L +N T AF L +YL N+ I F +
Sbjct: 146 IPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYS 205
Query: 273 NLTYLSLASNNFSGIVEPYMLAKLVNLAALELSH 306
+ L ++ + + + L L L A
Sbjct: 206 GPSLLDVSQTSVTAL-PSKGLEHLKELIARNTWT 238
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 2e-11
Identities = 45/250 (18%), Positives = 84/250 (33%), Gaps = 56/250 (22%)
Query: 181 SRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSDNQLT 239
++ + IPS + L+L L TIPS F+ LP + I +S +
Sbjct: 14 EDFRVTCKDIQ-RIPS---LPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSID--- 65
Query: 240 GHLDAFPSKSLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLASNNFSGIVEPYMLAKLVN 298
L + S F L+ +T++ + + ++P L +L
Sbjct: 66 ------------------VTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPL 106
Query: 299 LAALELSHNSL-SFGTTSKVNS---------------------SF----PQIFILSLSAC 332
L L + + L F +KV S +F + L L
Sbjct: 107 LKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166
Query: 333 NISAFPSF-LRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWK 391
++ + +L + L++N I + S LD+S +T + +
Sbjct: 167 GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLE 226
Query: 392 NLKYLKLQSN 401
+LK L ++
Sbjct: 227 HLKELIARNT 236
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 1e-08
Identities = 46/280 (16%), Positives = 89/280 (31%), Gaps = 81/280 (28%)
Query: 10 TKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFR-LSNLQMVRLKF 68
Q L L + T+ NL +++ + +S + + F LS + + ++
Sbjct: 31 PSTQTLKLIETHLRTIPSHAFSNL-PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89
Query: 69 NSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLG 128
NL+ + P + L L+ L +
Sbjct: 90 TRNLTYIDPDA---------------LKE--------LPLLKFLGIFNT----------- 115
Query: 129 NVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNN 188
L + P L+ ++ + L+I++N
Sbjct: 116 ---GLKMF------------PDLTKVY--------------------STDIFFILEITDN 140
Query: 189 QLTGSIPSHG-SGLQN-LAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHL--DA 244
SIP + GL N L+LYNN + ++ + F L + L+ N+ + DA
Sbjct: 141 PYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDA 199
Query: 245 FP--SKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASN 282
F L ++ + ++PS E +L L +
Sbjct: 200 FGGVYSGPSLLDVSQTSVT-ALPSKGLE--HLKELIARNT 236
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 78.0 bits (192), Expect = 9e-16
Identities = 48/176 (27%), Positives = 73/176 (41%), Gaps = 22/176 (12%)
Query: 146 HIPPSLSNLHQLTDVDLGSNSFDGQFPDIM--NLTRISRLDISNNQLTGSIPSHG-SGLQ 202
+P + L DL N+ + LT + L +S+N L I S +
Sbjct: 36 SLPSYTALL------DLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVP 88
Query: 203 NLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSDNQLTG-HLDAFPS-KSLRKLYLTNNR 259
NL L L +N L T+ +LF+ L L + L +N + +AF L+KLYL+ N+
Sbjct: 89 NLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ 147
Query: 260 LHGSIPSSIFE----LANLTYLSLASNNFSGIVEPYMLAKLVNL--AALELSHNSL 309
+ P + + L L L L+SN + L KL L L +N L
Sbjct: 148 IS-RFPVELIKDGNKLPKLMLLDLSSNKLKKL-PLTDLQKLPAWVKNGLYLHNNPL 201
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 2e-12
Identities = 43/174 (24%), Positives = 60/174 (34%), Gaps = 29/174 (16%)
Query: 107 RHLRELHLSQCNFYGFLP-ASLGNVTQLAVLSLSFKSFSGHIPP-SLSNLHQLTDVDLGS 164
+ L LS N + +T L L LS + I + + L +DL S
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97
Query: 165 N--------SFDGQFPDIMNLTRISRLDISNNQLTGSIPSHG-SGLQNLAVLRLYNNTLS 215
N F L + L + NN + + + + L L L N +S
Sbjct: 98 NHLHTLDEFLFSD-------LQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS 149
Query: 216 GTIPSWLFT----LPLLRDIDLSDNQLT----GHLDAFPSKSLRKLYLTNNRLH 261
P L LP L +DLS N+L L P+ LYL NN L
Sbjct: 150 -RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 1e-07
Identities = 42/153 (27%), Positives = 64/153 (41%), Gaps = 19/153 (12%)
Query: 263 SIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFP 322
++P S+ + L L+ NN S + + +L NL +L LSHN L+F +S+ P
Sbjct: 32 NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVP 88
Query: 323 QIFILSLSACNISAFPS--FLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHN 380
+ L LS+ ++ F L L L N+I + +E L L LS N
Sbjct: 89 NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFE-DMAQLQKLYLSQN 146
Query: 381 FITEMKQIPW---------KNLKYLKLQSNLLQ 404
I+ + P L L L SN L+
Sbjct: 147 QIS---RFPVELIKDGNKLPKLMLLDLSSNKLK 176
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 4e-07
Identities = 38/209 (18%), Positives = 64/209 (30%), Gaps = 58/209 (27%)
Query: 12 LQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFR-LSNLQMVRLKFNS 70
LL L + ++S + ++L SL LS+ + F + NL+ + L N
Sbjct: 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSN- 98
Query: 71 NLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNV 130
L LD +L+ L L L N
Sbjct: 99 -------------HLHTLD----------EFLFSDLQALEVLLLY------------NN- 122
Query: 131 TQLAVLSLSFKSFSGHIPP-SLSNLHQLTDVDLGSNSF----DGQFPDIMNLTRISRLDI 185
+ + + ++ QL + L N D L ++ LD+
Sbjct: 123 -HIV-----------VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL 170
Query: 186 SNNQLTGSIPSHGSGLQNLAV--LRLYNN 212
S+N+L + L L L+NN
Sbjct: 171 SSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 1e-06
Identities = 36/232 (15%), Positives = 69/232 (29%), Gaps = 37/232 (15%)
Query: 7 QNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFR-LSNLQMVR 65
+T L L L + ++ + + +L L LS + E +F L L+++
Sbjct: 61 TRLTNLHSLLLSHNHLNFISSEAFVPV-PNLRYLDLSSNHLH-TLDEFLFSDLQALEVLL 118
Query: 66 LKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLP- 124
L N + +D ++ ++ L++L+LSQ F
Sbjct: 119 LYNN--------------HIVVVD----------RNAFEDMAQLQKLYLSQNQISRFPVE 154
Query: 125 --ASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLT--DVDLGSNSFD-----GQFPDIM 175
+ +L +L LS L L + L +N + Q
Sbjct: 155 LIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHW 214
Query: 176 NLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPL 227
++S + L + +L S TL +
Sbjct: 215 QYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNCSEYKESAWEAHLGDTLTI 266
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 2e-15
Identities = 52/182 (28%), Positives = 83/182 (45%), Gaps = 16/182 (8%)
Query: 182 RLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSDNQLTG 240
+LD+ +N+L+ L L +L L +N L T+P+ +F L L + ++DN+L
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA 99
Query: 241 -HLDAFPS-KSLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLASNNFSGIVEPYMLAKLV 297
+ F +L +L L N+L S+P +F+ L LTYLSL N + + KL
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSL-PKGVFDKLT 157
Query: 298 NLAALELSHNSLSFGTTSKVNSSF---PQIFILSLSACNISAFP--SFLRSLELAYLDLS 352
+L L L +N L +F ++ L L + P +F +L L L
Sbjct: 158 SLKELRLYNNQL----KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ 213
Query: 353 EN 354
EN
Sbjct: 214 EN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 1e-11
Identities = 62/225 (27%), Positives = 96/225 (42%), Gaps = 42/225 (18%)
Query: 186 SNNQLTGSIPSHGSGL-QNLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSDNQLTG-HL 242
S+ +LT +IPS + + L L +N LS ++PS F L LR + L+DN+L
Sbjct: 24 SSKKLT-AIPS---NIPADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPA 78
Query: 243 DAFPS-KSLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLASNNFSGIVEPYMLAKLVNLA 300
F K+L L++T+N+L ++P +F+ L NL L L N + P + L L
Sbjct: 79 GIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSL-PPRVFDSLTKLT 136
Query: 301 ALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSL-ELAYLDLSENNIDGQ 359
L L +N L SL F L L L L N + +
Sbjct: 137 YLSLGYNELQ-----------------SLPK---GVF----DKLTSLKELRLYNNQL-KR 171
Query: 360 IPNWMWEVGKDTLSFLDLSHNFITEMKQ---IPWKNLKYLKLQSN 401
+P ++ L L L +N + + + + LK L+LQ N
Sbjct: 172 VPEGAFD-KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 3e-06
Identities = 49/211 (23%), Positives = 80/211 (37%), Gaps = 40/211 (18%)
Query: 10 TKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIF-RLSNLQMVRLKF 68
+ L L +S++ L+ L L L+ ++Q P IF L NL+ + +
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTK-LRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTD 94
Query: 69 NSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSI-CNLRHLRELHLSQCNFYGFLPASL 127
N + LP + L +L EL L + N LP +
Sbjct: 95 NKLQA-------------------------LPIGVFDQLVNLAELRLDR-NQLKSLPPRV 128
Query: 128 -GNVTQLAVLSLSFKSFSGHIPPSL-SNLHQLTDVDLGSNSF----DGQFPDIMNLTRIS 181
++T+L LSL + +P + L L ++ L +N +G F LT +
Sbjct: 129 FDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFD---KLTELK 184
Query: 182 RLDISNNQLTGSIPSHGSGLQNLAVLRLYNN 212
L + NNQL L+ L +L+L N
Sbjct: 185 TLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 1e-04
Identities = 52/236 (22%), Positives = 80/236 (33%), Gaps = 67/236 (28%)
Query: 263 SIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLS------FGTTSK 316
+IPS+I A+ L L SN S + +L L L L+ N L F
Sbjct: 30 AIPSNIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN 86
Query: 317 VNSSFPQIFILSLSACNISAFPS--FLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSF 374
+ + L ++ + A P F + + LA L L N + +P + F
Sbjct: 87 LET-------LWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRV---------F 129
Query: 375 LDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPP------PRLQFLLASNNQFTGEI 428
L+ L YL L N LQ +P L+ L NNQ
Sbjct: 130 DSLT-------------KLTYLSLGYNELQS---LPKGVFDKLTSLKELRLYNNQLK--- 170
Query: 429 IQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQ---ISWKNLGYLDLRSN 481
+P + L L L +N + ++ + S + L L L+ N
Sbjct: 171 ----------RVPEGAFD-KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 8e-15
Identities = 37/149 (24%), Positives = 70/149 (46%), Gaps = 23/149 (15%)
Query: 146 HIPPSLSNLH----QLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHG--S 199
++P +++ + + + +F ++ R+D+SNNQ++ +
Sbjct: 29 NLPETITEIRLEQNTIKV--IPPGAFSP-------YKKLRRIDLSNNQIS-ELAP-DAFQ 77
Query: 200 GLQNLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSDNQLTG-HLDAFPS-KSLRKLYLT 256
GL++L L LY N ++ +P LF L L+ + L+ N++ +DAF +L L L
Sbjct: 78 GLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLY 136
Query: 257 NNRLHGSIPSSIFE-LANLTYLSLASNNF 284
+N+L +I F L + + LA N F
Sbjct: 137 DNKLQ-TIAKGTFSPLRAIQTMHLAQNPF 164
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 4e-06
Identities = 33/165 (20%), Positives = 63/165 (38%), Gaps = 22/165 (13%)
Query: 242 LDAFPS---KSLRKLYLTNNRLHGSIPSSIF-ELANLTYLSLASNNFSGIVEPYMLAKLV 297
L P+ +++ ++ L N + IP F L + L++N S + P L
Sbjct: 23 LTEIPTNLPETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLR 80
Query: 298 NLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFP--SFLRSLELAYLDLSENN 355
+L +L L N ++ + + +L L+A I+ +F L L L +N
Sbjct: 81 SLNSLVLYGNKITE-LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK 139
Query: 356 IDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWK---NLKYLK 397
+ I + + + L+ N P+ +LK+L
Sbjct: 140 L-QTIAKGTFS-PLRAIQTMHLAQN--------PFICDCHLKWLA 174
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 1e-14
Identities = 74/476 (15%), Positives = 150/476 (31%), Gaps = 101/476 (21%)
Query: 33 LSSSLTSLSLSYCRIQGEFPENIFR-LSNLQMVRLKFNS-------NLSGVFPRSNWTSP 84
+S + SL + + + L Q+VRL ++S +
Sbjct: 1 MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVN---PA 57
Query: 85 LRCLDVSGTRFSGQLPDSICN-LRH----LRELHLSQCNF----YGFLPASLGNVTQLAV 135
L L++ + L+ +++L L C G L ++L + L
Sbjct: 58 LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE 117
Query: 136 LSLS--------FKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQ-----FPDIMNLTRISR 182
L LS + + L +L + L S +
Sbjct: 118 LHLSDNLLGDAGLQLLCEGL---LDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKE 174
Query: 183 LDISNNQLTGS-IPSHGSGLQ----NLAVLRLYNNTLS----GTIPSWLFTLPLLRDIDL 233
L +SNN + + + GL+ L L+L + ++ + + + LR++ L
Sbjct: 175 LTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL 234
Query: 234 SDNQLT-------GHLDAFPSKSLRKLYLTNNRLH----GSIPSSIFELANLTYLSLASN 282
N+L PS LR L++ + G + + +L LSLA N
Sbjct: 235 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294
Query: 283 NFSGIVEPYMLAKLVN----LAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFP 338
+ L+ L +L + S + + + S+
Sbjct: 295 ELGDEGARLLCETLLEPGCQLESLWVKSCSFT-----------------AACCSHFSSVL 337
Query: 339 SFLRSLELAYLDLSENNIDGQIPNWMWEVGKD---TLSFLDLSHNFITE---------MK 386
+ R L L +S N ++ + + L L L+ +++ +
Sbjct: 338 AQNRFLL--ELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL 395
Query: 387 QIPWKNLKYLKLQSN--------LLQGPLPVPPPRLQFLLASNNQFTGEIIQSICS 434
+L+ L L +N L + P L+ L+ + ++ E+ + +
Sbjct: 396 ANH--SLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQA 449
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 3e-14
Identities = 81/496 (16%), Positives = 147/496 (29%), Gaps = 111/496 (22%)
Query: 85 LRCLDVSGTRFSGQLPDSIC-NLRHLRELHLSQCNF----YGFLPASLGNVTQLAVLSLS 139
++ LD+ S + L+ + + L C + ++L LA L+L
Sbjct: 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64
Query: 140 FKSFSG----HIPPSLSNLH-QLTDVDLGSNSFDGQ-----FPDIMNLTRISRLDISNNQ 189
+ L ++ + L + G + L + L +S+N
Sbjct: 65 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124
Query: 190 LTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF---- 245
L + GLQ L L L + L L+
Sbjct: 125 LGDA------GLQLLCEGLLDPQCR-------------LEKLQLEYCSLSAASCEPLASV 165
Query: 246 --PSKSLRKLYLTNNRLHGSIPSSIFEL-----ANLTYLSLASNNFS-----GIVEPYML 293
++L ++NN ++ + + + L L L S + + ++
Sbjct: 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG--IV 223
Query: 294 AKLVNLAALELSHNSLS-FGTTS---KVNSSFPQIFILSLSACNIS-----AFPSFLRSL 344
A +L L L N L G + ++ L + C I+ LR+
Sbjct: 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK 283
Query: 345 E-LAYLDLSENNIDGQIPNWMWEVGKD---TLSFLDLSHNFITEMKQIPWKNLKYL--KL 398
E L L L+ N + + + E + L L + T + L
Sbjct: 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA------ACCSHFSSVL 337
Query: 399 QSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLS 458
N L L SNN+ ++ +C L P L L L+
Sbjct: 338 AQN----------RFLLELQISNNRLEDAGVRELCQG--LGQPGS-------VLRVLWLA 378
Query: 459 HNFITKMKQISWKNLGYLDLRSNLLQGPLLVPPSSLRVILILNNQFTGEIIHSICDIIA- 517
++ + L + LL SLR + + NN I + + +
Sbjct: 379 DCDVS--------DSSCSSLAATLLANH------SLRELDLSNNCLGDAGILQLVESVRQ 424
Query: 518 ----LDVLDLSNNRLS 529
L+ L L + S
Sbjct: 425 PGCLLEQLVLYDIYWS 440
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 7e-13
Identities = 88/421 (20%), Positives = 143/421 (33%), Gaps = 76/421 (18%)
Query: 175 MNLTRISRLDISNNQLT-GSIPSHGSGLQNLAVLRLYNNTLSGT----IPSWLFTLPLLR 229
M+L I LDI +L+ LQ V+RL + L+ I S L P L
Sbjct: 1 MSLD-IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALA 59
Query: 230 DIDLSDNQLT-------GHLDAFPSKSLRKLYLTNNRLH----GSIPSSIFELANLTYLS 278
+++L N+L PS ++KL L N L G + S++ L L L
Sbjct: 60 ELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELH 119
Query: 279 LASNNFSGIVEPYMLAKLVN----LAALELSHNSLSFGTTSKVNSSF---PQIFILSLSA 331
L+ N + L++ L L+L + SLS + + S P L++S
Sbjct: 120 LSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179
Query: 332 CNIS-----AFPSFLRS--LELAYLDLSENNIDGQIPNWMWEVGKD--TLSFLDLSHNFI 382
+I+ L+ +L L L + + + +L L L N +
Sbjct: 180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239
Query: 383 T--------EMKQIPWKNLKYLKLQSNLLQ-------GPLPVPPPRLQFLLASNNQFTGE 427
P L+ L + + + L+ L + N+ E
Sbjct: 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299
Query: 428 IIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITK--MKQISW-----KNLGYLDLRS 480
+ +C + L P L L + T S + L L + +
Sbjct: 300 GARLLCET--LLEPGC-------QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISN 350
Query: 481 NLLQGP--------LLVPPSSLRVILILNNQFTGEIIHSICDIIA----LDVLDLSNNRL 528
N L+ L P S LRV+ + + + S+ + L LDLSNN L
Sbjct: 351 NRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410
Query: 529 S 529
Sbjct: 411 G 411
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 7e-10
Identities = 71/405 (17%), Positives = 128/405 (31%), Gaps = 93/405 (22%)
Query: 30 LKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLD 89
L+ S + LSL C + G + L+ L+ L
Sbjct: 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSST-------LRTLPT-------------LQELH 119
Query: 90 VSGTRFSGQLPDSICNLR-----HLRELHLSQCNF----YGFLPASLGNVTQLAVLSLSF 140
+S +C L +L L C+ L + L L++S
Sbjct: 120 LSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179
Query: 141 KSFSG----HIPPSLSNLH-QLTDVDLGSNSFDGQ-----FPDIMNLTRISRLDISNNQL 190
+ + L + QL + L S + + + L + +N+L
Sbjct: 180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239
Query: 191 TGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLT----GHL-DAF 245
G+ L L+ ++ LR + + + +T G L
Sbjct: 240 G------DVGMAELCPGLLHPSS-------------RLRTLWIWECGITAKGCGDLCRVL 280
Query: 246 PS-KSLRKLYLTNNRLHGSIPSSIFEL-----ANLTYLSLASNNFS-----GIVEPYMLA 294
+ +SL++L L N L + E L L + S +F+ +LA
Sbjct: 281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS--VLA 338
Query: 295 KLVNLAALELSHNSLS------FGTTSKVNSSFPQIFILSLSACNIS-----AFPSFLRS 343
+ L L++S+N L S + +L L+ C++S + + L +
Sbjct: 339 QNRFLLELQISNNRLEDAGVRELCQGLGQPGS--VLRVLWLADCDVSDSSCSSLAATLLA 396
Query: 344 LE-LAYLDLSENNIDGQIPNWMWEVGKD---TLSFLDLSHNFITE 384
L LDLS N + + E + L L L + +E
Sbjct: 397 NHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 4e-13
Identities = 40/129 (31%), Positives = 63/129 (48%), Gaps = 9/129 (6%)
Query: 186 SNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSDNQLTG-HLD 243
SN +L IP H Q A LRL NN + + +F LP LR I+ S+N++T
Sbjct: 19 SNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG 75
Query: 244 AFPS-KSLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLASNNFSGIVEPYMLAKLVNLAA 301
AF + ++ LT+NRL ++ +F+ L +L L L SN + + L ++
Sbjct: 76 AFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCV-GNDSFIGLSSVRL 133
Query: 302 LELSHNSLS 310
L L N ++
Sbjct: 134 LSLYDNQIT 142
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 6e-10
Identities = 32/138 (23%), Positives = 62/138 (44%), Gaps = 24/138 (17%)
Query: 135 VLSLSFKSFSGHIPPS--LSNLHQLTDVDLGSN--------SFDGQFPDIMNLTRISRLD 184
L L+ F+ + + L QL ++ +N +F+G + ++ +
Sbjct: 36 ELRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG-------ASGVNEIL 87
Query: 185 ISNNQLTGSIPSHG-SGLQNLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSDNQLTG-H 241
+++N+L ++ GL++L L L +N ++ + + F L +R + L DNQ+T
Sbjct: 88 LTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVA 145
Query: 242 LDAFPS-KSLRKLYLTNN 258
AF + SL L L N
Sbjct: 146 PGAFDTLHSLSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 21/119 (17%)
Query: 105 NLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSL-SNLHQLTDVDLG 163
L LR+++ S + + + + L+ + + L L + L
Sbjct: 55 KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLR 113
Query: 164 SN--------SFDGQFPDIMNLTRISRLDISNNQLTGSIPSHG--SGLQNLAVLRLYNN 212
SN SF G L+ + L + +NQ+T ++ G L +L+ L L N
Sbjct: 114 SNRITCVGNDSFIG-------LSSVRLLSLYDNQIT-TVA-PGAFDTLHSLSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 5e-04
Identities = 29/147 (19%), Positives = 49/147 (33%), Gaps = 16/147 (10%)
Query: 263 SIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFP 322
IP I L L +N F+ + + KL L + S+N ++
Sbjct: 25 KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGAS 81
Query: 323 QIFILSLSACNISAFPS--FLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHN 380
+ + L++ + F L L L N I + N + G ++ L L N
Sbjct: 82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI-TCVGNDSFI-GLSSVRLLSLYDN 139
Query: 381 FITEMKQIPW------KNLKYLKLQSN 401
I + +L L L +N
Sbjct: 140 QI---TTVAPGAFDTLHSLSTLNLLAN 163
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 70.6 bits (172), Expect = 5e-13
Identities = 46/262 (17%), Positives = 78/262 (29%), Gaps = 32/262 (12%)
Query: 68 FNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASL 127
S L ++S + S L + + + L+EL + +
Sbjct: 334 LKDRPECWCRDSATDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLM 392
Query: 128 GNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISN 187
+ L + + FS ++ + DL S M + L +++
Sbjct: 393 RALDPLLYEKETLQYFST--LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAH 450
Query: 188 NQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPS 247
LT + H L + L L +N L +P L L L + SDN L
Sbjct: 451 KDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-------- 499
Query: 248 KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHN 307
++ + L L L L +N L L L L N
Sbjct: 500 ---------------NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543
Query: 308 SLSF--GTTSKVNSSFPQIFIL 327
SL G ++ P + +
Sbjct: 544 SLCQEEGIQERLAEMLPSVSSI 565
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 57.8 bits (139), Expect = 5e-09
Identities = 37/220 (16%), Positives = 64/220 (29%), Gaps = 25/220 (11%)
Query: 41 SLSYCRIQGEFPENIFRLSNLQMVRLKFNS------------NLSGVFPRSNWTSPLRCL 88
+ + + L L L + P + W L
Sbjct: 331 CVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL 390
Query: 89 DVSGTRFSGQLPDSICNLRHLREL--------HLSQCNFYGFLPASLGNVTQLAVLSLSF 140
+ +++ L+ + + F + VL L+
Sbjct: 391 LMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAH 450
Query: 141 KSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSG 200
K + + L L +T +DL N P + L + L S+N L ++ +
Sbjct: 451 KDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-NVDGVAN- 506
Query: 201 LQNLAVLRLYNNTLSG-TIPSWLFTLPLLRDIDLSDNQLT 239
L L L L NN L L + P L ++L N L
Sbjct: 507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 7e-07
Identities = 49/309 (15%), Positives = 93/309 (30%), Gaps = 17/309 (5%)
Query: 129 NVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNN 188
+V +S S L+ ++ + L + R +
Sbjct: 243 DVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLC 302
Query: 189 QLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSK 248
L + + V+ +++ + RD + L S
Sbjct: 303 DLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST 362
Query: 249 SLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNS 308
L+ + L P + + L + L A + E L L A++ +
Sbjct: 363 VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKE--TLQYFSTLKAVDPMRAA 420
Query: 309 LSFGTTSKVNSSFP-------QIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIP 361
SK + +L L+ +++ + L + +LDLS N + +P
Sbjct: 421 YLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALP 479
Query: 362 NWMWEVGKDTLSFLDLSHNFITEMKQIPW-KNLKYLKLQSNLLQGPLPVPP----PRLQF 416
+ + L L S N + + + L+ L L +N LQ + P PRL
Sbjct: 480 PALAALRC--LEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL 537
Query: 417 LLASNNQFT 425
L N
Sbjct: 538 LNLQGNSLC 546
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 6e-06
Identities = 35/222 (15%), Positives = 73/222 (32%), Gaps = 20/222 (9%)
Query: 323 QIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFI 382
L+ + + S L ++ + + + + L +LS
Sbjct: 305 PAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATD---EQLFRCELSVEKS 361
Query: 383 TEMKQ--IPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTG----------EIIQ 430
T ++ K L+ L+ ++ + + L LL
Sbjct: 362 TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 421
Query: 431 SICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISW-KNLGYLDLRSNLLQ--GPL 487
S + + + ++ + L+L+H +T + + + +LDL N L+ P
Sbjct: 422 LDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA 481
Query: 488 LVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLS 529
L L V+ +N + + ++ L L L NNRL
Sbjct: 482 LAALRCLEVLQASDNALE--NVDGVANLPRLQELLLCNNRLQ 521
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 3e-05
Identities = 31/154 (20%), Positives = 55/154 (35%), Gaps = 31/154 (20%)
Query: 341 LRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPW-KNLKYLKLQ 399
+ + AYLD + + E L L+H +T + + + +L L
Sbjct: 414 VDPMRAAYLDDLRSKFLLENSVLKMEYADVR--VLHLAHKDLTVLCHLEQLLLVTHLDLS 471
Query: 400 SNLLQGPLPVPP-----PRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSY 454
N L+ +PP L+ L AS+N ++++ + L L
Sbjct: 472 HNRLRA---LPPALAALRCLEVLQASDNA-----LENVDGVANLP-----------RLQE 512
Query: 455 LNLSHNFITKMKQISW----KNLGYLDLRSNLLQ 484
L L +N + + I L L+L+ N L
Sbjct: 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 5e-05
Identities = 39/234 (16%), Positives = 78/234 (33%), Gaps = 24/234 (10%)
Query: 303 ELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPN 362
E + +++ Q+F LS + S L S + +L N +
Sbjct: 330 ECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCK-ELQELEPENKWCLLTI 388
Query: 363 WMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPV---PPPRLQFLLA 419
+ D L + + + + +K + YL + V ++ L
Sbjct: 389 ILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHL 448
Query: 420 SNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQ--ISWKNLGYLD 477
++ T +C L +++L+LSHN + + + + L L
Sbjct: 449 AHKDLT-----VLCHLEQLL-----------LVTHLDLSHNRLRALPPALAALRCLEVLQ 492
Query: 478 LRSNLLQG-PLLVPPSSLRVILILNNQFTG-EIIHSICDIIALDVLDLSNNRLS 529
N L+ + L+ +L+ NN+ I + L +L+L N L
Sbjct: 493 ASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 66.3 bits (161), Expect = 6e-12
Identities = 25/107 (23%), Positives = 40/107 (37%), Gaps = 5/107 (4%)
Query: 181 SRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSDNQLT 239
S L + + H G +NL L + N + L LR++ + + L
Sbjct: 11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69
Query: 240 G-HLDAFPS-KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNF 284
DAF L +L L+ N L S+ + +L L L+ N
Sbjct: 70 FVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 64.0 bits (155), Expect = 3e-11
Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 4/110 (3%)
Query: 155 HQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHG-SGLQNLAVLRLYNNT 213
H + + + + ++ L I N Q + GL L L + +
Sbjct: 8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67
Query: 214 LSGTIPSWLFT-LPLLRDIDLSDNQLTG-HLDAFPSKSLRKLYLTNNRLH 261
L + F P L ++LS N L SL++L L+ N LH
Sbjct: 68 LR-FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 52.8 bits (126), Expect = 1e-07
Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 2/99 (2%)
Query: 257 NNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSK 316
+ NLT L + + +E L L L L + + L F
Sbjct: 16 TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPD 74
Query: 317 VNSSFPQIFILSLSACNISAFP-SFLRSLELAYLDLSEN 354
P++ L+LS + + ++ L L L LS N
Sbjct: 75 AFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 46.7 bits (110), Expect = 1e-05
Identities = 19/116 (16%), Positives = 40/116 (34%), Gaps = 7/116 (6%)
Query: 78 RSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPA-SLGNVTQLAVL 136
+ +S LRC + +L EL++ L L + +L L
Sbjct: 6 CPHGSSGLRCTRDGALD----SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNL 61
Query: 137 SLSFKSFSGHIPP-SLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLT 191
++ + P + +L+ ++L N+ + + + L +S N L
Sbjct: 62 TIVKSGLR-FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH 116
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 2e-11
Identities = 35/232 (15%), Positives = 81/232 (34%), Gaps = 18/232 (7%)
Query: 248 KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHN 307
+ K L + + S EL+ + + ++N + + NL L LSHN
Sbjct: 19 ANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQSLAG---MQFFTNLKELHLSHN 73
Query: 308 SLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEV 367
+ + ++ LS++ + + + S L+ L L N + + +
Sbjct: 74 QI---SDLSPLKDLTKLEELSVNRNRLKNL-NGIPSACLSRLFLDNNELR-DTDSLI--- 125
Query: 368 GKDTLSFLDLSHNFITEMKQI-PWKNLKYLKLQSNLLQGPLPVPP-PRLQFLLASNNQFT 425
L L + +N + + + L+ L L N + + ++ ++ + +
Sbjct: 126 HLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCV 185
Query: 426 GEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLGYLD 477
E + L I + + + +S +S+ + W+ Y D
Sbjct: 186 NE---PVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTD 234
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 3e-06
Identities = 40/285 (14%), Positives = 84/285 (29%), Gaps = 44/285 (15%)
Query: 6 VQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVR 65
+ L ++ +V K LS + + + IQ + +NL+ +
Sbjct: 15 DPGLANAVKQNLGKQSVTDLVS--QKELSG-VQNFNGDNSNIQS--LAGMQFFTNLKELH 69
Query: 66 LKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRH--LRELHLSQCNFYGFL 123
L N +S + P + T L L V+ R ++ + L L L
Sbjct: 70 LSHN-QISDLSPLKDLTK-LEELSVNRNRLK-----NLNGIPSACLSRLFLDNNELRDTD 122
Query: 124 PASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRL 183
L ++ L +LS+ I L L +L +DL N + L +++ +
Sbjct: 123 S--LIHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEIT-NTGGLTRLKKVNWI 177
Query: 184 DISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLD 243
D++ + + L ++ + + +S+
Sbjct: 178 DLTGQKCVNEPVKYQPELYITNTVKDPDGR-------------WISPYYISNG------- 217
Query: 244 AFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIV 288
S + ++ + + F G V
Sbjct: 218 ----GSYVDGCVLWELPV-YTDEVSYKFSEYINVGETEAIFDGTV 257
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 6e-06
Identities = 31/161 (19%), Positives = 61/161 (37%), Gaps = 21/161 (13%)
Query: 372 LSFLDLSHNFITEMKQIPW-KNLKYLKLQSNLLQGPLPV-PPPRLQFLLASNNQFTGEII 429
+L +T++ ++ ++ +Q + L+ L S+NQ I
Sbjct: 21 AVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQ-----I 75
Query: 430 QSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQG-PLL 488
+ L L L+++ N + + I L L L +N L+ L
Sbjct: 76 SDLSPLKDLT-----------KLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSL 124
Query: 489 VPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLS 529
+ +L ++ I NN+ I + + L+VLDL N ++
Sbjct: 125 IHLKNLEILSIRNNKLKS--IVMLGFLSKLEVLDLHGNEIT 163
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 3e-11
Identities = 45/136 (33%), Positives = 61/136 (44%), Gaps = 15/136 (11%)
Query: 182 RLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSDNQLTG 240
+LD+ + L + GL L L L N L T+ + +F L L + L++NQL
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA- 96
Query: 241 HLDAFPSK------SLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLASNNFSGIVEPYML 293
+ P L KLYL N+L S+PS +F+ L L L L +N I
Sbjct: 97 ---SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSI-PAGAF 151
Query: 294 AKLVNLAALELSHNSL 309
KL NL L LS N L
Sbjct: 152 DKLTNLQTLSLSTNQL 167
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 2e-10
Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 5/126 (3%)
Query: 183 LDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHL 242
+ ++ + + + L L + I + TL ID SDN++ L
Sbjct: 2 VKLTAELIE-QAAQY-TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL 57
Query: 243 DAFPS-KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAA 301
D FP + L+ L + NNR+ L +LT L L +N+ + + LA L +L
Sbjct: 58 DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTY 117
Query: 302 LELSHN 307
L + N
Sbjct: 118 LCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 2e-06
Identities = 22/113 (19%), Positives = 41/113 (36%), Gaps = 8/113 (7%)
Query: 293 LAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLS 352
V L+L + + ++ Q + S I F L L ++
Sbjct: 15 YTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVN 72
Query: 353 ENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI----PWKNLKYLKLQSN 401
N I +I + + L+ L L++N + E+ + K+L YL + N
Sbjct: 73 NNRIC-RIGEGLDQALP-DLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 9e-06
Identities = 33/160 (20%), Positives = 56/160 (35%), Gaps = 41/160 (25%)
Query: 326 ILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEM 385
++ L+A I + ++ LDL I I N D +D S N I ++
Sbjct: 1 MVKLTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENL--GATLDQFDAIDFSDNEIRKL 57
Query: 386 KQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWIS 445
L+ RL+ LL +NN+ I I +P
Sbjct: 58 D-----GFPLLR---------------RLKTLLVNNNR-----ICRIGEGLDQALPD--- 89
Query: 446 EIGKDSLSYLNLSHNFITKMKQIS----WKNLGYLDLRSN 481
L+ L L++N + ++ + K+L YL + N
Sbjct: 90 ------LTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 6e-05
Identities = 23/154 (14%), Positives = 50/154 (32%), Gaps = 17/154 (11%)
Query: 206 VLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLT--GHLDAFPSKSLRKLYLTNNRLHGS 263
+++L + R++DL ++ +L A + ++N +
Sbjct: 1 MVKLTAELIE-QAAQ-YTNAVRDRELDLRGYKIPVIENLGA-TLDQFDAIDFSDNEIR-K 56
Query: 264 IPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQ 323
+ L L L + +N I + L +L L L++NSL +S
Sbjct: 57 L-DGFPLLRRLKTLLVNNNRICRI-GEGLDQALPDLTELILTNNSLVELGDLDPLASLKS 114
Query: 324 IFILSLSACNISAFP-------SFLRSLELAYLD 350
+ L + ++ + + LD
Sbjct: 115 LTYLCILRNPVTNKKHYRLYVIYKVPQVR--VLD 146
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 5e-04
Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 5/117 (4%)
Query: 125 ASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLD 184
A N + L L I + L Q +D N + L R+ L
Sbjct: 13 AQYTNAVRDRELDLR-GYKIPVIENLGATLDQFDAIDFSDNEIR-KLDGFPLLRRLKTLL 70
Query: 185 ISNNQLTGSIPSHGSGLQNLAVLRLYNNTLS--GTIPSWLFTLPLLRDIDLSDNQLT 239
++NN++ L +L L L NN+L G + L +L L + + N +T
Sbjct: 71 VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRNPVT 126
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 2e-10
Identities = 67/374 (17%), Positives = 111/374 (29%), Gaps = 86/374 (22%)
Query: 36 SLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRF 95
S+ SL I E +++F + L + ++ + N + R
Sbjct: 5 SIEGKSLKLDAITTEDEKSVFAV-------LLEDDSVKEIVLSGNT------IGTEAAR- 50
Query: 96 SGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLH 155
L ++I + + L S G V +L + +L
Sbjct: 51 --WLSENIASKKDLEIAEFSDI--------FTGRVKDEIPEALR------LLLQALLKCP 94
Query: 156 QLTDVDLGSNSFDGQ-----FPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLY 210
+L V L N+F + T + L + NN L +A L
Sbjct: 95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ------AGAKIARA-LQ 147
Query: 211 NNTLSGTIPSWLFTLPLLRDIDLSDNQLTG----HL-DAFPS-KSLRKLYLTNNRLH--- 261
++ P LR I N+L F S + L + + N +
Sbjct: 148 ELAVN----KKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG 203
Query: 262 --GSIPSSIFELANLTYLSLASNNF-----SGIVEPYMLAKLVNLAALELSHNSLSFGTT 314
+ + L L L N F S + L NL L L+ LS
Sbjct: 204 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI--ALKSWPNLRELGLNDCLLS---- 257
Query: 315 SKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQ----IPNWMWEVGKD 370
+ A + S L ++ L L L N I+ + + E
Sbjct: 258 -------------ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP- 303
Query: 371 TLSFLDLSHNFITE 384
L FL+L+ N +E
Sbjct: 304 DLLFLELNGNRFSE 317
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 1e-09
Identities = 48/333 (14%), Positives = 92/333 (27%), Gaps = 74/333 (22%)
Query: 127 LGNVTQLAVLSLSFKSFSG----HIPPSLSNLHQLTDVDLGSNSFDGQ-----FPDIMNL 177
+ + + SL + + + L + ++ L N+ + +I +
Sbjct: 1 MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59
Query: 178 TRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQ 237
+ + S+ L+ L L P L + LSDN
Sbjct: 60 KDLEIAEFSDIFTGRVKDEIPEALRLLL--------------QALLKCPKLHTVRLSDNA 105
Query: 238 LTGHLDAFP-------SKSLRKLYLTNNRL-------------HGSIPSSIFELANLTYL 277
G P L LYL NN L ++ L +
Sbjct: 106 F-GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI 164
Query: 278 SLASNNF-----SGIVEPYMLAKLVNLAALELSHNSL-SFGTTSKVNSSF---PQIFILS 328
N + L +++ N + G + ++ +L
Sbjct: 165 ICGRNRLENGSMKEWAK--TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLD 222
Query: 329 LSACNI-----SAFPSFLRSL-ELAYLDLSENNIDGQ----IPNWMWEVGKDTLSFLDLS 378
L SA L+S L L L++ + + + + ++ L L L
Sbjct: 223 LQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQ 282
Query: 379 HNFIT--------EMKQIPWKNLKYLKLQSNLL 403
+N I + +L +L+L N
Sbjct: 283 YNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 2e-08
Identities = 54/389 (13%), Positives = 109/389 (28%), Gaps = 110/389 (28%)
Query: 176 NLTRISRLDISNNQLTGS-IPSHGSGL---QNLAVLRLYNNTLSGT----IPSWLFTLPL 227
+ I + + +T S + L ++ + L NT+ + + +
Sbjct: 3 RFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD 61
Query: 228 LRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNF--- 284
L + SD TG + ++LR + ++ + L + L+ N F
Sbjct: 62 LEIAEFSDIF-TGRVKDEIPEALR-----------LLLQALLKCPKLHTVRLSDNAFGPT 109
Query: 285 --SGIVEPYMLAKLVNLAALELSHNSLS-FGTTSKVNSSFPQIFILSLSACNISAFPSFL 341
+++ L+K L L L +N L +L ++
Sbjct: 110 AQEPLID--FLSKHTPLEHLYLHNNGLGPQAG---------AKIARALQELAVNKKAKNA 158
Query: 342 RSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSN 401
L + N ++ + + + L +K+
Sbjct: 159 PPLR--SIICGRNRLE--------NGSMKEWAKT-FQSH----------RLLHTVKM--- 194
Query: 402 LLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNF 461
N E I+ + L L+L N
Sbjct: 195 ------------------VQNGIRPEGIEHLLLEGLAYCQE---------LKVLDLQDNT 227
Query: 462 ITK--MKQIS-----WKNLGYLDLRSNLLQGP---------LLVPPSSLRVILILNNQFT 505
T ++ W NL L L LL + L+ + + N+
Sbjct: 228 FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 287
Query: 506 GEIIHSICDIIA-----LDVLDLSNNRLS 529
+ + ++ +I L L+L+ NR S
Sbjct: 288 LDAVRTLKTVIDEKMPDLLFLELNGNRFS 316
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 2e-08
Identities = 50/295 (16%), Positives = 85/295 (28%), Gaps = 54/295 (18%)
Query: 35 SSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTR 94
S+ + LS I E + + +L +T ++ R
Sbjct: 32 DSVKEIVLSGNTIGTEAARWLSEN-------IASKKDLEIAEFSDIFTGRVKDEIPEALR 84
Query: 95 FSGQLPDSICNLRHLRELHLSQCNFYG----FLPASLGNVTQLAVLSLSFKSFS------ 144
L ++ L + LS F L L T L L L
Sbjct: 85 L---LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAK 141
Query: 145 -------GHIPPSLSNLHQLTDVDLGSNSFDGQF-----PDIMNLTRISRLDISNNQLT- 191
+ N L + G N + + + + + N +
Sbjct: 142 IARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP 201
Query: 192 -GSIPSHGSGLQ---NLAVLRLYNNTLSGT----IPSWLFTLPLLRDIDLSDNQLTG--- 240
G GL L VL L +NT + + L + P LR++ L+D L+
Sbjct: 202 EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261
Query: 241 -----HLDAFPSKSLRKLYLTNNRLHGSIPSSIFE-----LANLTYLSLASNNFS 285
+ L+ L L N + ++ + +L +L L N FS
Sbjct: 262 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 5e-10
Identities = 41/169 (24%), Positives = 68/169 (40%), Gaps = 31/169 (18%)
Query: 129 NVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNS------FDGQFPDIMNLTRISR 182
+ + + + + L + + LG N LT ++
Sbjct: 39 ELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDISALKE-------LTNLTY 89
Query: 183 LDISNNQLTGSIPSH-GSGLQNLAVLRLYNNTLSGTIPSWLF-TLPLLRDIDLSDNQLTG 240
L ++ NQL S+P+ L NL L L N L ++P +F L L ++L+ NQL
Sbjct: 90 LILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQ- 146
Query: 241 HLDAFPSK------SLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLASN 282
+ P +L +L L+ N+L S+P +F+ L L L L N
Sbjct: 147 ---SLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQN 191
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 5e-07
Identities = 44/140 (31%), Positives = 64/140 (45%), Gaps = 21/140 (15%)
Query: 131 TQLAVLSLSFKSFSGHIPPSL-SNLHQLTDVDLGSNSF----DGQFPDIMNLTRISRLDI 185
T L L L+ +P + L L ++ L N DG F + NLT L++
Sbjct: 85 TNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY---LNL 140
Query: 186 SNNQLTGSIPSHGSG----LQNLAVLRLYNNTLSGTIPSWLF-TLPLLRDIDLSDNQLTG 240
++NQL S+P G L NL L L N L ++P +F L L+D+ L NQL
Sbjct: 141 AHNQLQ-SLPK---GVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKS 195
Query: 241 HLD-AFPS-KSLRKLYLTNN 258
D F SL+ ++L +N
Sbjct: 196 VPDGVFDRLTSLQYIWLHDN 215
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 1e-09
Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 137 SLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPS 196
K IP + L L D +LG S DG F + +L + L++ NQLT I
Sbjct: 17 GRGLKEIPRDIPLHTTELL-LNDNELGRISSDGLFGRLPHLVK---LELKRNQLT-GIEP 71
Query: 197 HG-SGLQNLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSDNQLTGHLD-AFPS-KSLRK 252
+ G ++ L+L N + I + +F L L+ ++L DNQ++ + +F SL
Sbjct: 72 NAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS 130
Query: 253 LYLTNN 258
L L +N
Sbjct: 131 LNLASN 136
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 2e-09
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 17/111 (15%)
Query: 182 RLDISNNQLTGSIPSHG--SGLQNLAVLRLYNNTLSGTIPSWLF-TLPLLRDIDLSDNQL 238
L +++N+L I S G L +L L L N L+ I F ++++ L +N++
Sbjct: 33 ELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKI 90
Query: 239 TGHLDAFPSK------SLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLASN 282
+K L+ L L +N++ + FE L +LT L+LASN
Sbjct: 91 K----EISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSLNLASN 136
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 2e-07
Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 18/108 (16%)
Query: 184 DISNNQLTGSIPSHGSGL-QNLAVLRLYNNTLSGTIPSWLF-TLPLLRDIDLSDNQLTGH 241
D + L IP + + L L +N L LF LP L ++L NQLT
Sbjct: 14 DCTGRGLK-EIPR---DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-- 67
Query: 242 LDAFPSK------SLRKLYLTNNRLHGSIPSSIFE-LANLTYLSLASN 282
+++L L N++ I + +F L L L+L N
Sbjct: 68 --GIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDN 112
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 3e-09
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Query: 201 LQNLAVLRLYNNTLS-GTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPS-KSLRKLYLTNN 258
++ L L N+ + G + L + + LT + P L+KL L++N
Sbjct: 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIANLPKLNKLKKLELSDN 74
Query: 259 RLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHN 307
R+ G + + NLT+L+L+ N + L KL NL +L+L +
Sbjct: 75 RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 1e-06
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 6/108 (5%)
Query: 298 NLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNID 357
++ L L ++ + G + F ++ LS +++ + + +L L+LS+N +
Sbjct: 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVS 77
Query: 358 GQIPNWMWEVGKDTLSFLDLSHNFITEMKQI----PWKNLKYLKLQSN 401
G + E L+ L+LS N I ++ I +NLK L L +
Sbjct: 78 G-GLEVLAE-KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 2e-05
Identities = 34/126 (26%), Positives = 51/126 (40%), Gaps = 8/126 (6%)
Query: 235 DNQLTGHLDAFPSKSLRKLYLTNNRL-HGSIPSSIFELANLTYLSLASNNFSGIVEPYML 293
++ L +++L L N+R G + E L +LS + + I L
Sbjct: 4 GRRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN---L 60
Query: 294 AKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPS--FLRSLE-LAYLD 350
KL L LELS N +S G + P + L+LS I + L+ LE L LD
Sbjct: 61 PKLNKLKKLELSDNRVS-GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD 119
Query: 351 LSENNI 356
L +
Sbjct: 120 LFNCEV 125
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 20/115 (17%), Positives = 48/115 (41%), Gaps = 4/115 (3%)
Query: 126 SLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDI 185
+ +V +L + + G + +L + + ++ L ++ +L++
Sbjct: 15 TPSDVKELVLDNSRSNE--GKLEGLTDEFEELEFLSTINVGLT-SIANLPKLNKLKKLEL 71
Query: 186 SNNQLTGSIPSHGSGLQNLAVLRLYNNTLSG-TIPSWLFTLPLLRDIDLSDNQLT 239
S+N+++G + NL L L N + + L L L+ +DL + ++T
Sbjct: 72 SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 1e-04
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 5/86 (5%)
Query: 176 NLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSD 235
+ L N LT SI ++ L L L L +N +SG + P L ++LS
Sbjct: 40 EFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG 97
Query: 236 NQLT--GHLDAFPS-KSLRKLYLTNN 258
N++ ++ ++L+ L L N
Sbjct: 98 NKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 8e-09
Identities = 38/133 (28%), Positives = 55/133 (41%), Gaps = 16/133 (12%)
Query: 158 TDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGT 217
T V+ S I T LD+ N L L +L L L N L +
Sbjct: 10 TTVECYSQGRTSVPTGIPAQTT--YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-S 66
Query: 218 IPSWLF-TLPLLRDIDLSDNQLTGHLDAFPSK------SLRKLYLTNNRLHGSIPSSIFE 270
+P+ +F L L ++LS NQL + P+ L++L L N+L S+P +F+
Sbjct: 67 LPNGVFNKLTSLTYLNLSTNQLQ----SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFD 121
Query: 271 -LANLTYLSLASN 282
L L L L N
Sbjct: 122 KLTQLKDLRLYQN 134
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 1e-08
Identities = 40/153 (26%), Positives = 60/153 (39%), Gaps = 28/153 (18%)
Query: 158 TDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGT 217
T VD S I + L + +NQ+T P L NL L L +N L
Sbjct: 22 TTVDCRSKRHASVPAGIPTNAQ--ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-A 78
Query: 218 IPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFE-LANLTY 276
+P +F + LT L L L N+L +PS++F+ L +L
Sbjct: 79 LPVGVF------------DSLT---------QLTVLDLGTNQLT-VLPSAVFDRLVHLKE 116
Query: 277 LSLASNNFSGIVEPYMLAKLVNLAALELSHNSL 309
L + N + + P + +L +L L L N L
Sbjct: 117 LFMCCNKLTEL--PRGIERLTHLTHLALDQNQL 147
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 2e-08
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 3/106 (2%)
Query: 206 VLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPS-KSLRKLYLTNNRLHGSI 264
VL + G I L + L + L + P L+KL L+ NR+ G +
Sbjct: 30 VLDNCKSND-GKIEGLTAEFVNLEFLSLINVGLI-SVSNLPKLPKLKKLELSENRIFGGL 87
Query: 265 PSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLS 310
+L NLT+L+L+ N I L KL L +L+L + ++
Sbjct: 88 DMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 1e-06
Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 6/108 (5%)
Query: 298 NLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNID 357
+ L L + + G + + F + LSL + + + + +L L+LSEN I
Sbjct: 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIF 84
Query: 358 GQIPNWMWEVGKDTLSFLDLSHNFITEMKQI----PWKNLKYLKLQSN 401
G + + E L+ L+LS N + ++ + + LK L L +
Sbjct: 85 G-GLDMLAE-KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 2e-08
Identities = 84/481 (17%), Positives = 138/481 (28%), Gaps = 133/481 (27%)
Query: 7 QNVTKLQ--LLFLDYVDMSTVV----PGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLS- 59
Q KL+ LL L V+ G+ K + + ++Q + IF L+
Sbjct: 135 QPYLKLRQALLELR--PAKNVLIDGVLGSGK---TWVALDVCLSYKVQCKMDFKIFWLNL 189
Query: 60 ---NLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQ 116
N L+ L NWT D N++ +H Q
Sbjct: 190 KNCNSPETVLEMLQKLLYQI-DPNWT---------------SRSDHSSNIKL--RIHSIQ 231
Query: 117 CNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDV-DLGS-NSFDGQFPDI 174
L S L VL +V + + N+F+ I
Sbjct: 232 AELRRLL-KSKPYENCLLVLL---------------------NVQNAKAWNAFNLSCK-I 268
Query: 175 MNLTR-ISRLDISNNQLTGSIPS--HGSGL---QNLAVLRLYNNTLSGTIPS-WLFTLPL 227
+ TR D + T I H L + ++L Y + +P L T P
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 228 --------LRD-IDLSDN-------QLT----GHLDAFPSKSLRKLY--LTNNRLHGSIP 265
+RD + DN +LT L+ RK++ L+ IP
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Query: 266 SSIFEL--ANLTY------------LSLA-SNNFSGIVEPYML-----AKLVNLAALELS 305
+ + L ++ SL + + KL N AL
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL--- 445
Query: 306 HNSL----SFGTTSKVNSSFPQI---FILS-----LSACNISAFPSFLRSLELAYLDLS- 352
H S+ + T + P + S L + R + +LD
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV---FLDFRF 502
Query: 353 -ENNIDGQIPNWMWEVG-KDTLSFLDLSHNFITEMKQIPWKNLKYL-----KLQSNLLQG 405
E I W +TL L +I + + + + K++ NL+
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562
Query: 406 P 406
Sbjct: 563 K 563
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 1e-05
Identities = 44/288 (15%), Positives = 86/288 (29%), Gaps = 71/288 (24%)
Query: 306 HNSLSFGTT------SKVNSSFPQIFILSLSACNISAFP-SFLRSLELAYLDLSENNIDG 358
H+ + F T + S F F+ + ++ P S L E+ ++ + +
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI-IMSKDAVS 62
Query: 359 QIPNWMW---EVGKDTL-----SFLDLSHNFI-----TEMKQIPWKNLKYLKLQSNLLQG 405
W ++ + L +++ F+ TE +Q Y++ + L
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 406 PLPVPP---PRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISE-----IGKDSLSYLNL 457
RLQ L ++ Q++ L + GK ++
Sbjct: 123 NQVFAKYNVSRLQPYL--------KLRQALLE---LRPAKNVLIDGVLGSGKTWVALDVC 171
Query: 458 -SHNFITKMK-QISWKNLG---------------YLDLRSNLLQGPLLVPPSSLRVILI- 499
S+ KM +I W NL + N LR+ I
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 500 --LNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSPWCQT 545
L + + C ++ L ++ N K F+ C+
Sbjct: 232 AELRRLLKSK-PYENCLLV-LL--NVQN-------AKAWNAFNLSCKI 268
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 3e-08
Identities = 52/384 (13%), Positives = 113/384 (29%), Gaps = 43/384 (11%)
Query: 2 MEALVQNVTKLQLLFLDYVDMSTVVPGTLKNLSS---SLTSLSLSYCRIQGEFPENIFRL 58
+ ++V + K++ L ++ S L L+ SL L+ P+++ +
Sbjct: 156 LLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETI 215
Query: 59 ----SNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHL 114
+L V++ L V + L +P+ NL R+L
Sbjct: 216 ARNCRSLVSVKVGDFEILELVGFFKAAAN-LEEFCGGSLNEDIGMPEKYMNLVFPRKLCR 274
Query: 115 SQCNFYG--FLPASLGNVTQLAVLSLSFKSFSGH-IPPSLSNLHQLTDVDLGSNSFDGQF 171
++ G +P Q+ L L + + L ++ + D
Sbjct: 275 LGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGL 334
Query: 172 PDI-MNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRD 230
+ ++ RL I + + ++ L L
Sbjct: 335 EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG------------CQELEY 382
Query: 231 IDLSDNQLT----GHLDAFPSKSLRKL---------YLTNNRLHGSIPSSIFELANLTYL 277
+ + + +T + K+L +T+ L + S + L
Sbjct: 383 MAVYVSDITNESLESI-GTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRF 441
Query: 278 SLASN--NFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNIS 335
+ + + Y+ N+ + L + S + + P + L + C S
Sbjct: 442 AFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS 501
Query: 336 --AFPSFLRSLE-LAYLDLSENNI 356
A + + L L YL +
Sbjct: 502 ERAIAAAVTKLPSLRYLWVQGYRA 525
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 2e-05
Identities = 58/445 (13%), Positives = 127/445 (28%), Gaps = 57/445 (12%)
Query: 7 QNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFR--LSNLQMV 64
L+ ++ T + N L S+ + + + + +L+ +
Sbjct: 84 PRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL 143
Query: 65 RLKFNSNLS--GVFPRSNWTSPLRCLDVSGTRFSGQLPDSIC----NLRHLRELHLSQCN 118
+L S + G+ ++ L + + FS + + + L L+
Sbjct: 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTE 203
Query: 119 FYGFLPASLGNVTQ----LAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD- 173
F P L + + L + + + L + GS + D P+
Sbjct: 204 FAKISPKDLETIARNCRSLVSVKVGDFEILELVGF-FKAAANLEEFCGGSLNEDIGMPEK 262
Query: 174 IMNLTRISRLDISNNQLTG--SIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFT-LPLLRD 230
MNL +L G +P + L L L L P L
Sbjct: 263 YMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV 322
Query: 231 IDLSDNQLTGHLDAFPS--KSLRKLYLTNNRLHGSIP--------SSIFELA----NLTY 276
++ + L+ K L++L + + + LA L Y
Sbjct: 323 LETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY 382
Query: 277 LSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVN--------SSFPQIFILS 328
+++ ++ + + L NL L T ++ +
Sbjct: 383 MAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFA 442
Query: 329 LSACN-------ISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKD--TLSFLDLSH 379
+S + ++ ++ L + + E + L L++
Sbjct: 443 FYLRQGGLTDLGLSYIGQYSPNVR--WMLLGYVGESDE---GLMEFSRGCPNLQKLEMRG 497
Query: 380 NFITE--MKQI--PWKNLKYLKLQS 400
+E + +L+YL +Q
Sbjct: 498 CCFSERAIAAAVTKLPSLRYLWVQG 522
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 1e-04
Identities = 54/392 (13%), Positives = 102/392 (26%), Gaps = 58/392 (14%)
Query: 8 NVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRI----------QGEFPENIFR 57
+ + T P L +L SL L G +
Sbjct: 46 KIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVT 105
Query: 58 -----LSNLQMVRLKFNSNLSG---VFPRSNWTSPLRCLDVSG-TRFSGQLPDSIC-NLR 107
L L+ V + ++ L L + + F+ SI + R
Sbjct: 106 EISNNLRQLKSVHFRRMIVSDLDLDRLAKARADD-LETLKLDKCSGFTTDGLLSIVTHCR 164
Query: 108 HLRELHLSQCNFY----GFLPASLGNVTQLAVLSLSFKSFSG-------HIPPSLSNLHQ 156
++ L + + +F +L + T L VL+ F+ I + +L
Sbjct: 165 KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224
Query: 157 LTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSG 216
+ D G F NL ++ + + + L L L +
Sbjct: 225 VKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE 284
Query: 217 TIPSWLFTLPLLRDIDLSDNQLT---GHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELAN 273
+P +R +DL L +L L N +
Sbjct: 285 -MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ 343
Query: 274 LTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACN 333
L L + + +E +S + ++ +++ +
Sbjct: 344 LKRLRIERG--------------ADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSD 389
Query: 334 IS--------AFPSFLRSLELAYLDLSENNID 357
I+ + L L LD E D
Sbjct: 390 ITNESLESIGTYLKNLCDFRLVLLDREERITD 421
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 2e-07
Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 8/128 (6%)
Query: 182 RLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLT-- 239
L + + + S L+ L L N + I S L + LR + L N +
Sbjct: 29 ELHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIKKI 85
Query: 240 GHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNL 299
+LDA +L +L+++ N++ S+ S I +L NL L +++N + E LA L L
Sbjct: 86 ENLDAVA-DTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKL 142
Query: 300 AALELSHN 307
L L+ N
Sbjct: 143 EDLLLAGN 150
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 1e-06
Identities = 31/154 (20%), Positives = 53/154 (34%), Gaps = 36/154 (23%)
Query: 252 KLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSF 311
+L+ + + +++ L +L+L++NN I L+ + NL L L N +
Sbjct: 29 ELHGMIPPIEK-MDATLSTLKACKHLALSTNNIEKI-SS--LSGMENLRILSLGRNLIK- 83
Query: 312 GTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDT 371
I + +LE L +S N I +
Sbjct: 84 ---------------------KIENLDAVADTLE--ELWISYNQIA-SLSGIE---KLVN 116
Query: 372 LSFLDLSHNFITEMKQI----PWKNLKYLKLQSN 401
L L +S+N IT +I L+ L L N
Sbjct: 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 2e-05
Identities = 28/146 (19%), Positives = 48/146 (32%), Gaps = 31/146 (21%)
Query: 375 LDLSHNFITEMKQIPW--KNLKYLKLQSNLLQ-----GPLPVPPPRLQFLLASNNQFTGE 427
L I +M K K+L L +N ++ + L+ L N
Sbjct: 30 LHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGME----NLRILSLGRNL---- 81
Query: 428 IIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISW-KNLGYLDLRSNLLQGP 486
I+ I + + D+L L +S+N I + I NL L + +N +
Sbjct: 82 -IKKIENLDAV----------ADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNW 130
Query: 487 ----LLVPPSSLRVILILNNQFTGEI 508
L L +L+ N +
Sbjct: 131 GEIDKLAALDKLEDLLLAGNPLYNDY 156
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 6e-04
Identities = 44/175 (25%), Positives = 64/175 (36%), Gaps = 32/175 (18%)
Query: 111 ELHLSQCNFYGFLPASLGNVTQLAVLSLS---FKSFSGHIPPSLSNLHQLTDVDLGSNSF 167
ELH + A+L + L+LS + S LS + L + LG N
Sbjct: 29 ELHGMIPPIEK-MDATLSTLKACKHLALSTNNIEKISS-----LSGMENLRILSLGRN-- 80
Query: 168 DGQFPDIMNL----TRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSG-TIPSWL 222
I NL + L IS NQ+ S+ S L NL VL + NN ++ L
Sbjct: 81 --LIKKIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNWGEIDKL 136
Query: 223 FTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYL 277
L L D+ L+ N L + S ++ + + L NL L
Sbjct: 137 AALDKLEDLLLAGNPLYNDYKENNATSEYRIEV------------VKRLPNLKKL 179
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 3e-07
Identities = 56/356 (15%), Positives = 108/356 (30%), Gaps = 34/356 (9%)
Query: 2 MEALVQNVTKLQLLFLDYVDMSTVVPGTLKNLSS---SLTSLSLSYCRIQGEFPENIFRL 58
+ T L L + + S V L+ L + +L SL L+ + + R
Sbjct: 176 LSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRA 234
Query: 59 SNLQMVRLKFNSN------LSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLREL 112
L+ + + SG+ + LRCL LP L L
Sbjct: 235 PQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTL 294
Query: 113 HLSQCNFYGF-LPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQF 171
+LS + L L +L L + + S L ++ + +
Sbjct: 295 NLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVME 354
Query: 172 PDIM-----------NLTRISRLDISNNQLTG-SIPSHGSGLQNLAVLRLYNNTLSGTIP 219
P++ ++ + Q+T ++ + N+ RL
Sbjct: 355 PNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKA--- 411
Query: 220 SWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSL 279
P ++ D ++ LR+L L+ + LS+
Sbjct: 412 ------PDYLTLEPLDIGFGAIVEHCK--DLRRLSLSGLLTDKVFEYIGTYAKKMEMLSV 463
Query: 280 ASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNIS 335
A S + ++L+ +L LE+ S + L +S+C++S
Sbjct: 464 AFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 1e-06
Identities = 35/287 (12%), Positives = 82/287 (28%), Gaps = 30/287 (10%)
Query: 8 NVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFR-LSNLQMVRL 66
+ L+ + + + + L + L + + E I + N +++ L
Sbjct: 78 HFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVL 137
Query: 67 KFNSNLS--GVFPRSNWTSPLRCLDVSGTRFSGQLPDSIC----NLRHLRELHLSQCNFY 120
S G+ + L+ LD+ + + L L++S
Sbjct: 138 SSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASE 197
Query: 121 ---GFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNL 177
L + L L L+ + L QL ++ G +
Sbjct: 198 VSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYT----------- 246
Query: 178 TRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQ 237
+ + SG + L L + + + +P+ L ++LS
Sbjct: 247 ------AEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT 300
Query: 238 LT--GHLDAFPS-KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLAS 281
+ + L++L++ + + +L L +
Sbjct: 301 VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFP 347
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 4e-06
Identities = 66/393 (16%), Positives = 122/393 (31%), Gaps = 60/393 (15%)
Query: 2 MEALVQNVTKLQLLFLDYVDMSTVVPGTLKNLSS---SLTSLSLSYCRIQGEFPENIFRL 58
+ A+ L+ L L D+ V L + SL SL++S + F + RL
Sbjct: 148 LAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSF-SALERL 206
Query: 59 SNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCN 118
+ + L+ L ++ +L + L EL
Sbjct: 207 V-------------------TRCPN-LKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYT 246
Query: 119 ------FYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSF--DGQ 170
Y L +L +L LS + + ++P S +LT ++L +
Sbjct: 247 AEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDL 306
Query: 171 FPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFT------ 224
+ ++ RL + + + S ++L LR++ + P+ T
Sbjct: 307 VKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS 366
Query: 225 ----LPLLRDIDLSDNQLTG--------------HLDAFPSKSLRKLYLTNNRLHGSIPS 266
P L + Q+T + YLT L +
Sbjct: 367 VSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA 426
Query: 267 SIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFI 326
+ +L LSL S + V Y+ + L ++ S V S +
Sbjct: 427 IVEHCKDLRRLSL-SGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRK 485
Query: 327 LSLSACNIS--AFPSFLRSLE-LAYLDLSENNI 356
L + C A + LE + L +S ++
Sbjct: 486 LEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 39/298 (13%), Positives = 79/298 (26%), Gaps = 36/298 (12%)
Query: 21 DMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSN 80
+ V P T+ + S+ L + + + + S
Sbjct: 52 NCYAVSPATVIRRFPKVRSVELKGKP-------HFADFNLVPDGWGGYVYPWIEAMSSSY 104
Query: 81 WTSPLRCLDVSGTRFSGQLPDSIC-NLRHLRELHLSQCNFYG--FLPASLGNVTQLAVLS 137
+ L + + + + I + ++ + L LS C + L A L L
Sbjct: 105 --TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELD 162
Query: 138 LSFKSFSGHIPPSLS----NLHQLTDVDLGSNSFDGQFPDIMNLTR----ISRLDISNNQ 189
L LS L +++ + + F + L + L ++
Sbjct: 163 LRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV 222
Query: 190 LTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKS 249
+ + L L T + L K
Sbjct: 223 PLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSG----------------CKE 266
Query: 250 LRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHN 307
LR L + + +P+ + LT L+L+ +L + L L +
Sbjct: 267 LRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 4e-07
Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 32/138 (23%)
Query: 147 IPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHG-SGLQNLA 205
IP ++ L L N F ++ N ++ +D+SNN+++ ++ + S + L
Sbjct: 29 IPRDVTEL------YLDGNQFTLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLL 81
Query: 206 VLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIP 265
L L N L IP F + L SLR L L N + +P
Sbjct: 82 TLILSYNRLR-CIPPRTF------------DGLK---------SLRLLSLHGNDIS-VVP 118
Query: 266 SSIFE-LANLTYLSLASN 282
F L+ L++L++ +N
Sbjct: 119 EGAFNDLSALSHLAIGAN 136
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 1e-06
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 13/91 (14%)
Query: 206 VLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPS------KSLRKLYLTNNR 259
L L N + +P L L IDLS+N+++ + L L L+ NR
Sbjct: 35 ELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS----TLSNQSFSNMTQLLTLILSYNR 89
Query: 260 LHGSIPSSIFE-LANLTYLSLASNNFSGIVE 289
L IP F+ L +L LSL N+ S + E
Sbjct: 90 LR-CIPPRTFDGLKSLRLLSLHGNDISVVPE 119
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 5e-06
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 232 DLSDNQLTGHLDAFPS-KSLRKLYLTNNRLHGSIPSSIF-ELANLTYLSLASNNFSGIVE 289
L NQ T + K L + L+NNR+ ++ + F + L L L+ N I
Sbjct: 37 YLDGNQFTLVPKELSNYKHLTLIDLSNNRI-STLSNQSFSNMTQLLTLILSYNRLRCI-P 94
Query: 290 PYMLAKLVNLAALELSHNSLS 310
P L +L L L N +S
Sbjct: 95 PRTFDGLKSLRLLSLHGNDIS 115
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 241 HLDAFPS---KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLV 297
L P + + +LYL N+ +P + +LT + L++N S + + +
Sbjct: 21 GLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMT 78
Query: 298 NLAALELSHNSLS 310
L L LS+N L
Sbjct: 79 QLLTLILSYNRLR 91
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 9e-07
Identities = 42/292 (14%), Positives = 94/292 (32%), Gaps = 65/292 (22%)
Query: 292 MLAKLVNLAALELSHNSLS------FGTTSKVNSSFPQIFILSLSACNIS-----AFPSF 340
+ + +L+LS N+L + + L+LS ++
Sbjct: 17 FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPA--SVTSLNLSGNSLGFKNSDELVQI 74
Query: 341 LRSLE--LAYLDLSENNIDGQIPNWMWEVGKD---TLSFLDLSHNFIT--------EMKQ 387
L ++ + L+LS N + + + + + T++ LDL N + +
Sbjct: 75 LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFS 134
Query: 388 IPWKNLKYLKLQSNLLQGP--------LPVPPPRLQFLLASNNQFTGEIIQSICSSSTLE 439
++ L L+ N L L P + L N + + L
Sbjct: 135 NLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKF--LA 192
Query: 440 IPSWISEIGKDSLSYLNLSHNFITK--MKQISW------KNLGYLDLRSNLLQGP----- 486
S++ L+LS N + ++++ ++ L+L N L GP
Sbjct: 193 SIP-------ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENL 245
Query: 487 --LLVPPSSLRVILILNNQFTG-------EIIHSICDIIALDVLDLSNNRLS 529
L L+ + + + + + +I + ++D + +
Sbjct: 246 KLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 48/340 (14%), Positives = 100/340 (29%), Gaps = 62/340 (18%)
Query: 30 LKNLSSSLTSLSLSYCRIQGEFPENIFRL-----SNLQMVRLKFNS-------NLSGVFP 77
++ +TSL LS + + + +++ + L NS L +
Sbjct: 17 FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76
Query: 78 RSNWTSPLRCLDVSGTRFSGQLPDSICNL-----RHLRELHLSQCNFYG----FLPASLG 128
+ L++SG S + D + + L L +F +
Sbjct: 77 AIPAN--VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFS 134
Query: 129 NV-TQLAVLSLSFKSFSG----HIPPSLSNLH-QLTDVDLGSNSF-DGQFPDIMNL---- 177
N+ + L+L + L+ + + ++L N+ ++
Sbjct: 135 NLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASI 194
Query: 178 -TRISRLDISNNQLTGS-IPSHGSGLQN----LAVLRLYNNTLSGT----IPSWLFTLPL 227
++ LD+S N L + + L L N L G + +L
Sbjct: 195 PASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKH 254
Query: 228 LRDIDLSDNQLTGH--------LDAFPS-KSLRKLYLTNNRLHGSIPSSIFELA-----N 273
L+ + L + + AFP+ + + + +H S I L
Sbjct: 255 LQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGK 314
Query: 274 LTYLSLASNNFSGIVEPYMLAKLVN----LAALELSHNSL 309
SL + + + +N L + L
Sbjct: 315 ADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 58/337 (17%), Positives = 108/337 (32%), Gaps = 75/337 (22%)
Query: 228 LRDIDLSDNQLT-------GHLDAFPSKSLRKLYLTNNRLHGSIPSSIFEL-----ANLT 275
+ +DLS N L A S+ L L+ N L + ++ AN+T
Sbjct: 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83
Query: 276 YLSLASNNFS--GIVEPYMLAKLV-----NLAALELSHNSLSFGTTSKVNSSF----PQI 324
L+L+ N S E L K + + L+L N S ++S+ +F I
Sbjct: 84 SLNLSGNFLSYKSSDE---LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASI 140
Query: 325 FILSLSACNIS-----AFPSFLRSLE--LAYLDLSENNIDGQIPNWMWEVGKD---TLSF 374
L+L ++ L ++ + L+L NN+ + + + +++
Sbjct: 141 TSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTS 200
Query: 375 LDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICS 434
LDLS N + K + L P + L N G ++++
Sbjct: 201 LDLSANLLGL------------KSYAELAYI-FSSIPNHVVSLNLCLNCLHGPSLENLKL 247
Query: 435 SSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLLVPPSSL 494
L + L ++ + M + K LG + +
Sbjct: 248 LKD----------SLKHLQTVYLDYDIVKNMSKEQCKALGAA-FPNI----------QKI 286
Query: 495 RVILILNNQFTGEIIHSICDIIA-----LDVLDLSNN 526
++ + I ++I DV L N
Sbjct: 287 ILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQ 323
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 1e-05
Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 25/123 (20%)
Query: 147 IPPSLSNLH----QLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSG-- 200
IP S + L +L L FD LT++++L +S NQ+ S+P G
Sbjct: 26 IPSSATRLELESNKLQS--LPHGVFDK-------LTQLTKLSLSQNQIQ-SLP---DGVF 72
Query: 201 --LQNLAVLRLYNNTLSGTIPSWLF-TLPLLRDIDLSDNQLTGHLD-AFPS-KSLRKLYL 255
L L +L L+ N L ++P+ +F L L+++ L NQL D F SL+K++L
Sbjct: 73 DKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWL 131
Query: 256 TNN 258
N
Sbjct: 132 HTN 134
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 4e-04
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 232 DLSDNQLTG-HLDAFPS-KSLRKLYLTNNRLHGSIPSSIF-ELANLTYLSLASNNFSGIV 288
+L N+L F L KL L+ N++ S+P +F +L LT L L N +
Sbjct: 34 ELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQSL- 91
Query: 289 EPYMLAKLVNLAALELSHNSL 309
+ KL L L L N L
Sbjct: 92 PNGVFDKLTQLKELALDTNQL 112
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 45.7 bits (107), Expect = 2e-05
Identities = 28/176 (15%), Positives = 61/176 (34%), Gaps = 19/176 (10%)
Query: 228 LRDIDLSDNQLTG--HLDAFPS-KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNF 284
DID + +++ +D P ++ L + ++ NL L + S
Sbjct: 146 WGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGL 205
Query: 285 SG-IVEPYMLAKLVNLAALELSHNSLSFGTTSKV--------NSSFPQIFILSLSACNIS 335
+VE + + L NL L L +G + FP + L +
Sbjct: 206 PDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQ 265
Query: 336 -----AFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKD--TLSFLDLSHNFITE 384
F +L +D+S + + + + L F+++ +N++++
Sbjct: 266 NVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 44.6 bits (104), Expect = 5e-05
Identities = 24/171 (14%), Positives = 55/171 (32%), Gaps = 19/171 (11%)
Query: 177 LTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFT--LPLLRDIDLS 234
L + L+ + T ++ NL L + + L ++ + LP L + L
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227
Query: 235 DN-----------QLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFE---LANLTYLSLA 280
+L+ L + + + E L L + ++
Sbjct: 228 VGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS 287
Query: 281 SNNFS---GIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILS 328
+ + + + K+ +L + + +N LS ++ S P +S
Sbjct: 288 AGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVS 338
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 7e-05
Identities = 41/238 (17%), Positives = 82/238 (34%), Gaps = 33/238 (13%)
Query: 3 EALVQNVTKLQLLFLDYVDMSTVVPGTLKNLSS---SLTSLSLSYCRIQGEFPENIFRLS 59
+ L ++ + ++ +D + S + TL + S L +LSL R+ + + S
Sbjct: 84 QPLAEHFSPFRVQHMD-LSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS 142
Query: 60 NLQMVRLKFNSNLS--GVFPRSNWTSPLRCLDVSGT-RFSGQLPDSIC--NLRHLRELHL 114
NL + L S S + + S L L++S F+ + + +L+L
Sbjct: 143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202
Query: 115 SQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSF--DGQFP 172
S N+ + + +L L +DL + + F
Sbjct: 203 SGYR---------KNLQKSDLSTLV------------RRCPNLVHLDLSDSVMLKNDCFQ 241
Query: 173 DIMNLTRISRLDISN-NQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLR 229
+ L + L +S + + L L+++ GT+ LP L+
Sbjct: 242 EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 299
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 1e-04
Identities = 35/104 (33%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 158 TDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGT 217
T VD S I T L + +NQ+T P L L L L NN L+
Sbjct: 12 TTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-V 68
Query: 218 IPSWLF-TLPLLRDIDLSDNQLTGHLD-AFPS-KSLRKLYLTNN 258
+P+ +F L L + L+DNQL AF + KSL ++L NN
Sbjct: 69 LPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 36/104 (34%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 158 TDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGT 217
T V+ + I T RL ++NNQ+T P L NL L +N L+
Sbjct: 15 TLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-A 71
Query: 218 IPSWLF-TLPLLRDIDLSDNQLTGHLD-AFPS-KSLRKLYLTNN 258
IP+ +F L L +DL+DN L AF + KSL +YL NN
Sbjct: 72 IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 2e-04
Identities = 12/95 (12%), Positives = 34/95 (35%), Gaps = 6/95 (6%)
Query: 29 TLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSN-----LSGVFPRSNWTS 83
T + ++ + I +++ L ++ +RL L + N
Sbjct: 55 TGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQK 114
Query: 84 PLRCLDVSG-TRFSGQLPDSICNLRHLRELHLSQC 117
+ +++ + + ++ + R+L+ L LS
Sbjct: 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL 149
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 565 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.98 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.98 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.98 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.97 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.97 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.97 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.97 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.96 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.96 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.96 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.96 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.95 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.95 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.95 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.95 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.95 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.94 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.94 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.93 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.93 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.93 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.93 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.92 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.92 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.92 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.92 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.92 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.92 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.92 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.92 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.92 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.91 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.91 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.91 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.9 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.9 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.89 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.88 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.88 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.88 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.87 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.87 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.87 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.87 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.86 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.85 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.85 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.83 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.82 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.81 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.81 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.81 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.81 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.8 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.8 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.8 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.8 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.8 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.79 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.79 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.79 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.77 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.76 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.75 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.75 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.75 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.74 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.74 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.73 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.73 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.71 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.7 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.7 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.69 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.67 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.67 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.66 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.65 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.65 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.65 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.65 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.64 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.61 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.61 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.6 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.6 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.58 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.57 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.56 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.56 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.53 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.53 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.52 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.51 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.51 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.51 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.51 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.48 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.47 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.46 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.44 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.43 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.42 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.4 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.37 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.37 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.32 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.31 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.26 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.24 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.23 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.22 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.2 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.19 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.16 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.09 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.08 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.98 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.88 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.82 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.74 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.56 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.37 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.24 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.2 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.03 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.01 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 97.94 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.64 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.17 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.21 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-57 Score=494.03 Aligned_cols=522 Identities=27% Similarity=0.356 Sum_probs=279.6
Q ss_pred HhhCCCCCcEEEcCCCcCCCCCch--hhhhcCCCccEEEccCCcccccCCccc-cCCCCCCEEecCCCCCCCccCCC---
Q 037786 5 LVQNVTKLQLLFLDYVDMSTVVPG--TLKNLSSSLTSLSLSYCRIQGEFPENI-FRLSNLQMVRLKFNSNLSGVFPR--- 78 (565)
Q Consensus 5 ~~~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~~L~~L~l~~~~i~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~--- 78 (565)
.|+++++|++|++++|.+.+..+. .++.+ ++|++|++++|.+++..+..+ .++++|++|++++| .+.+..+.
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~ 172 (768)
T 3rgz_A 95 GFKCSASLTSLDLSRNSLSGPVTTLTSLGSC-SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN-SISGANVVGWV 172 (768)
T ss_dssp CCCCCTTCCEEECCSSEEEEEGGGGGGGGGC-TTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSS-CCEEETHHHHH
T ss_pred hhccCCCCCEEECCCCcCCCcCCChHHHhCC-CCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCC-ccCCcCChhhh
Confidence 466777777777777777665555 66666 777777777777765555544 56677777777666 33332221
Q ss_pred -CCCCCCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCC
Q 037786 79 -SNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQL 157 (565)
Q Consensus 79 -~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 157 (565)
...+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+. +.++++|++|++++|.+.+..|..+..+++|
T Consensus 173 ~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 249 (768)
T 3rgz_A 173 LSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTEL 249 (768)
T ss_dssp HTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSC
T ss_pred hhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCC
Confidence 2222444444444444433222 23444444444444444433333 4444444444444444444444444444444
Q ss_pred CEEEccCccccccCcC-----------------------CcC-CCCCCEEeccCCcccccCCCCCcCCCCCCEEEccccc
Q 037786 158 TDVDLGSNSFDGQFPD-----------------------IMN-LTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNT 213 (565)
Q Consensus 158 ~~L~l~~~~~~~~~~~-----------------------~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 213 (565)
++|++++|.+.+..+. +.. +++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 250 ~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~ 329 (768)
T 3rgz_A 250 KLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329 (768)
T ss_dssp CEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSE
T ss_pred CEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCc
Confidence 4444444444332222 222 2445555555555444444444445555555555554
Q ss_pred ccCCCch-hhcCCCCCCEEEccCCcccccCCCC--CCC-CCcEEEccCCccccCCchhhhc--CCCcCccccccccccCc
Q 037786 214 LSGTIPS-WLFTLPLLRDIDLSDNQLTGHLDAF--PSK-SLRKLYLTNNRLHGSIPSSIFE--LANLTYLSLASNNFSGI 287 (565)
Q Consensus 214 l~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~--~~~-~L~~L~l~~~~~~~~~~~~~~~--~~~L~~L~l~~n~~~~~ 287 (565)
+.+..+. .+..+++|++|++++|.+.+..+.. ..+ +|+.|++++|.+++..+..+.. +++|++|++++|.+.+.
T Consensus 330 l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 409 (768)
T 3rgz_A 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409 (768)
T ss_dssp EEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE
T ss_pred ccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccc
Confidence 4433332 2444555555555555444322222 112 4555555555555444444433 45556666666655543
Q ss_pred cChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCC-CCCchhhcc-ccceEeccCCcCcccCChhhh
Q 037786 288 VEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNIS-AFPSFLRSL-ELAYLDLSENNIDGQIPNWMW 365 (565)
Q Consensus 288 ~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~l~~~~~~~~~ 365 (565)
++ ..+..+++|++|++++|.+++..+..+ ..+++|+.|++++|.+. .+|..+... +|+.|++++|++++.+|..+.
T Consensus 410 ~p-~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 487 (768)
T 3rgz_A 410 IP-PTLSNCSELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487 (768)
T ss_dssp CC-GGGGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred cC-HHHhcCCCCCEEECcCCcccCcccHHH-hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh
Confidence 33 345666666666666666655444443 55666666666666665 444444333 666666666666666666554
Q ss_pred hhCCCCccEEEcCCCccCCccCC---CCCCCCeEEcCCCcccccCCCC---CCCCcEEEccccccCccchhhhhhcCCCC
Q 037786 366 EVGKDTLSFLDLSHNFITEMKQI---PWKNLKYLKLQSNLLQGPLPVP---PPRLQFLLASNNQFTGEIIQSICSSSTLE 439 (565)
Q Consensus 366 ~~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~i~~~~~~~l~~~~~~~ 439 (565)
.+++|+.|++++|+++...+. .+++|++|++++|++.+..|.. +++|++|++++|++++.+|..+.......
T Consensus 488 --~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~ 565 (768)
T 3rgz_A 488 --NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI 565 (768)
T ss_dssp --GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCB
T ss_pred --cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchh
Confidence 456666666666666644332 4566666666666666655543 56666677777766666666554321110
Q ss_pred CCcc----------------------------------c----------------------cccCCCCCcEEeCcCCCCC
Q 037786 440 IPSW----------------------------------I----------------------SEIGKDSLSYLNLSHNFIT 463 (565)
Q Consensus 440 ~~~~----------------------------------~----------------------~~~~~~~L~~L~l~~n~l~ 463 (565)
.... . ....++.|+.|++++|+++
T Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~ 645 (768)
T 3rgz_A 566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 645 (768)
T ss_dssp CCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB
T ss_pred hhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccc
Confidence 0000 0 0001245566666666666
Q ss_pred CC-cc--cCCCcccEEECCCCcccccCCC---CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCC
Q 037786 464 KM-KQ--ISWKNLGYLDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKC 535 (565)
Q Consensus 464 ~~-~~--~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~ 535 (565)
+. |. +.+++|+.|++++|.+++.+|. .+++|++||+++|++++.+|..++.+++|++|++++|++.+.+|+.
T Consensus 646 g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 646 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred ccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 55 43 5556666666666666665554 5566666666666666666666666666666666666666666544
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-56 Score=482.17 Aligned_cols=506 Identities=30% Similarity=0.397 Sum_probs=400.1
Q ss_pred HhhCCCCCcEEEcCCCcCCCCCchhh-hhcCCCccEEEccCCcccccCCcc---c----------------------cCC
Q 037786 5 LVQNVTKLQLLFLDYVDMSTVVPGTL-KNLSSSLTSLSLSYCRIQGEFPEN---I----------------------FRL 58 (565)
Q Consensus 5 ~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~~L~~L~l~~~~i~~~~~~~---~----------------------~~l 58 (565)
.++++++|++|++++|.+.+..+..+ ..+ ++|++|++++|.+++..+.. + ..+
T Consensus 121 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l 199 (768)
T 3rgz_A 121 SLGSCSGLKFLNVSSNTLDFPGKVSGGLKL-NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRC 199 (768)
T ss_dssp GGGGCTTCCEEECCSSEEECCSSCCSCCCC-TTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTC
T ss_pred HHhCCCCCCEEECcCCccCCcCCHHHhccC-CCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccC
Confidence 56777777777777776655444333 343 56666666666665444433 3 445
Q ss_pred CCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeec
Q 037786 59 SNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSL 138 (565)
Q Consensus 59 ~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l 138 (565)
++|++|++++| ...+..+.+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+.. .+++|++|++
T Consensus 200 ~~L~~L~Ls~n-~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L 276 (768)
T 3rgz_A 200 VNLEFLDVSSN-NFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSL 276 (768)
T ss_dssp TTCCEEECCSS-CCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEEC
T ss_pred CcCCEEECcCC-cCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEEC
Confidence 55555555555 34444444444466666666666665555556666666666666666655444432 5666666666
Q ss_pred cCCcccccCCcCccCC-CCCCEEEccCccccccCcC-CcCCCCCCEEeccCCcccccCCCC-CcCCCCCCEEEccccccc
Q 037786 139 SFKSFSGHIPPSLSNL-HQLTDVDLGSNSFDGQFPD-IMNLTRISRLDISNNQLTGSIPSH-GSGLQNLAVLRLYNNTLS 215 (565)
Q Consensus 139 ~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~l~ 215 (565)
++|.+.+.+|..+... ++|++|++++|.+.+..+. ++.+++|+.|++++|.+.+..|.. +..+++|++|++++|.+.
T Consensus 277 ~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~ 356 (768)
T 3rgz_A 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356 (768)
T ss_dssp CSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEE
T ss_pred cCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccC
Confidence 6676666777777664 9999999999998866554 899999999999999998777755 889999999999999998
Q ss_pred CCCchhhcCCC-CCCEEEccCCcccccCCCC----CCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccCh
Q 037786 216 GTIPSWLFTLP-LLRDIDLSDNQLTGHLDAF----PSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEP 290 (565)
Q Consensus 216 ~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 290 (565)
+..+..+..++ +|+.|++++|.+.+..... ..++|++|++++|.+++..|..+..+++|+.|++++|.+.+..+
T Consensus 357 ~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p- 435 (768)
T 3rgz_A 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP- 435 (768)
T ss_dssp ECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCC-
T ss_pred ccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCccc-
Confidence 78888888887 9999999999998654443 26789999999999998899999999999999999999986654
Q ss_pred HhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCC-CCCchhhcc-ccceEeccCCcCcccCChhhhhhC
Q 037786 291 YMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNIS-AFPSFLRSL-ELAYLDLSENNIDGQIPNWMWEVG 368 (565)
Q Consensus 291 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~ 368 (565)
..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.++ .+|..+... +|++|++++|++++.+|.++. .
T Consensus 436 ~~l~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~--~ 512 (768)
T 3rgz_A 436 SSLGSLSKLRDLKLWLNMLEGEIPQEL-MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG--R 512 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG--G
T ss_pred HHHhcCCCCCEEECCCCcccCcCCHHH-cCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh--c
Confidence 578999999999999999987766665 78899999999999998 667666555 999999999999999999887 5
Q ss_pred CCCccEEEcCCCccCCccC---CCCCCCCeEEcCCCcccccCCCC-----------------------------------
Q 037786 369 KDTLSFLDLSHNFITEMKQ---IPWKNLKYLKLQSNLLQGPLPVP----------------------------------- 410 (565)
Q Consensus 369 ~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~l~~n~~~~~~~~~----------------------------------- 410 (565)
+++|+.|++++|+++...+ ..+++|+.|++++|++.+.+|..
T Consensus 513 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (768)
T 3rgz_A 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592 (768)
T ss_dssp CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEE
T ss_pred CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccc
Confidence 7999999999999986555 27799999999999988655431
Q ss_pred --------------------------------------CCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCC
Q 037786 411 --------------------------------------PPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSL 452 (565)
Q Consensus 411 --------------------------------------~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L 452 (565)
+++|++||+++|++++.+|..+..+ +.|
T Consensus 593 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l--------------~~L 658 (768)
T 3rgz_A 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM--------------PYL 658 (768)
T ss_dssp EEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGC--------------TTC
T ss_pred ccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcc--------------ccC
Confidence 3678999999999999999999999 999
Q ss_pred cEEeCcCCCCCCC-cc--cCCCcccEEECCCCcccccCCC---CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCC
Q 037786 453 SYLNLSHNFITKM-KQ--ISWKNLGYLDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNN 526 (565)
Q Consensus 453 ~~L~l~~n~l~~~-~~--~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 526 (565)
++|++++|.+++. |. +.+++|+.||+++|++++.+|. .+++|++||+++|++++.+|.. ..+.++....+.+|
T Consensus 659 ~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN 737 (768)
T 3rgz_A 659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNN 737 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSC
T ss_pred CEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCC
Confidence 9999999999977 75 8899999999999999998887 7899999999999999999974 55666777788899
Q ss_pred cCcccCC
Q 037786 527 RLSGTIP 533 (565)
Q Consensus 527 ~~~~~~p 533 (565)
+..|-.|
T Consensus 738 ~~Lcg~~ 744 (768)
T 3rgz_A 738 PGLCGYP 744 (768)
T ss_dssp TEEESTT
T ss_pred chhcCCC
Confidence 9886544
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-50 Score=434.20 Aligned_cols=510 Identities=20% Similarity=0.165 Sum_probs=334.5
Q ss_pred HHHhhCCCCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCC-CCCC
Q 037786 3 EALVQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFP-RSNW 81 (565)
Q Consensus 3 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~ 81 (565)
+..|+++++|++|++++|.+.+..+.++..+ ++|++|++++|.++...+.+|+++++|++|++++| .+.+..+ .+..
T Consensus 42 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~ 119 (680)
T 1ziw_A 42 AANFTRYSQLTSLDVGFNTISKLEPELCQKL-PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVK 119 (680)
T ss_dssp GGGGGGGTTCSEEECCSSCCCCCCTTHHHHC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTT
T ss_pred HHHHhCCCcCcEEECCCCccCccCHHHHhcc-cCcCEEECCCCccCccChhhhccCCCCCEEECCCC-ccCccChhHccc
Confidence 3456677777777777777776666667666 67777777777776544445777777777777776 4444333 2334
Q ss_pred CCCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhcc--CCCCCCeeeccCCcccccCCcCccCC-----
Q 037786 82 TSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLG--NVTQLAVLSLSFKSFSGHIPPSLSNL----- 154 (565)
Q Consensus 82 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l----- 154 (565)
+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+. .+++|+.|++++|.+.+..+..+..+
T Consensus 120 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 199 (680)
T 1ziw_A 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG 199 (680)
T ss_dssp CTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECE
T ss_pred cCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhh
Confidence 47777777777777666666666777777777777776665555443 34677777777776665555555433
Q ss_pred ----------------------CCCCEEEccCccccccCcC-CcCCCC--CCEEeccCCcccccCCCCCcCCCCCCEEEc
Q 037786 155 ----------------------HQLTDVDLGSNSFDGQFPD-IMNLTR--ISRLDISNNQLTGSIPSHGSGLQNLAVLRL 209 (565)
Q Consensus 155 ----------------------~~L~~L~l~~~~~~~~~~~-~~~~~~--L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 209 (565)
++|+.|++++|.+.+..+. +..++. |+.|++++|.+.+..+..+..+++|++|++
T Consensus 200 L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 279 (680)
T 1ziw_A 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 279 (680)
T ss_dssp EECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred hhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeC
Confidence 3455555555555444333 444433 777777777766666666666777777777
Q ss_pred ccccccCCCchhhcCCCCCCEEEccCCcccccC-----------CCCCCCCCcEEEccCCccccCCchhhhcCCCcCccc
Q 037786 210 YNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHL-----------DAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLS 278 (565)
Q Consensus 210 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~-----------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 278 (565)
++|.+.+..+..+..+++|+.|++++|...... .....++|++|++++|.+++..+..+..+++|++|+
T Consensus 280 ~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 359 (680)
T 1ziw_A 280 EYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLS 359 (680)
T ss_dssp CSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEE
T ss_pred CCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEE
Confidence 777766556666667777777777665433110 112456677777777777766666667777777777
Q ss_pred cccccccC-ccChHhhhcC--CCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCC-CCCc-hh-hccccceEecc
Q 037786 279 LASNNFSG-IVEPYMLAKL--VNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNIS-AFPS-FL-RSLELAYLDLS 352 (565)
Q Consensus 279 l~~n~~~~-~~~~~~l~~~--~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~-~l~~-~~-~~~~L~~L~l~ 352 (565)
+++|.+.. .++...+..+ ++|+.|++++|.++...+..+ ..+++|+.|++++|.+. .++. .+ ...+|++|+++
T Consensus 360 Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls 438 (680)
T 1ziw_A 360 LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF-SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438 (680)
T ss_dssp CTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECC
T ss_pred CCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhh-hCCCCCCEEeCCCCcCccccCcccccCcccccEEecC
Confidence 77765321 1112222222 467777777777765544433 66777777777777775 3432 22 22377777787
Q ss_pred CCcCcccCChhhhhhCCCCccEEEcCCCccCCccC-----CCCCCCCeEEcCCCcccccCCC---CCCCCcEEEcccccc
Q 037786 353 ENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQ-----IPWKNLKYLKLQSNLLQGPLPV---PPPRLQFLLASNNQF 424 (565)
Q Consensus 353 ~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-----~~~~~L~~L~l~~n~~~~~~~~---~~~~L~~L~l~~n~i 424 (565)
+|++.+..+..+. .+++|+.|++++|.++.+.. ..+++|+.|++++|++.+..+. .+++|++|++++|++
T Consensus 439 ~n~l~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 516 (680)
T 1ziw_A 439 YNKYLQLTRNSFA--LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516 (680)
T ss_dssp SCSEEECCTTTTT--TCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCcceeChhhhh--cCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCc
Confidence 7777654444443 46778888888777654322 2567788888888887765443 367888888888887
Q ss_pred Cccchhh--------hhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcc---cCCCcccEEECCCCcccccCCC---C
Q 037786 425 TGEIIQS--------ICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQ---ISWKNLGYLDLRSNLLQGPLLV---P 490 (565)
Q Consensus 425 ~~~~~~~--------l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~ls~n~l~~~~~~---~ 490 (565)
++..... +..+ ++|++|++++|++..+|. ..+++|+.|++++|.+++..+. .
T Consensus 517 ~~~~~~~~~~~~~~~~~~l--------------~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~ 582 (680)
T 1ziw_A 517 ARLWKHANPGGPIYFLKGL--------------SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 582 (680)
T ss_dssp GGGGSTTSTTSCCCTTTTC--------------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cccchhhccCCcchhhcCC--------------CCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCC
Confidence 7543221 2333 888999999999888853 6778899999999988863332 6
Q ss_pred CCCCcEeeccCceeeeccchhhh-cCCCCCEEeCCCCcCccc
Q 037786 491 PSSLRVILILNNQFTGEIIHSIC-DIIALDVLDLSNNRLSGT 531 (565)
Q Consensus 491 ~~~L~~L~l~~n~~~~~~~~~l~-~~~~L~~L~l~~n~~~~~ 531 (565)
+++|+.|++++|.+++..+..+. .+++|+.|++++|++.|.
T Consensus 583 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 583 QVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp CTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred CCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence 78899999999999887777777 788999999999999877
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-50 Score=433.74 Aligned_cols=521 Identities=23% Similarity=0.249 Sum_probs=416.1
Q ss_pred CCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCC-CCCCCCCcEE
Q 037786 10 TKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPR-SNWTSPLRCL 88 (565)
Q Consensus 10 ~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~-~~~~~~L~~L 88 (565)
+++++|++++|.+.++.+..|..+ ++|++|++++|.+++..+.++.++++|++|++++| .+....+. +..+++|++|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRY-SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGG-TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCC-CcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEE
Confidence 689999999999999988889998 99999999999999888899999999999999999 56655553 5566999999
Q ss_pred EccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCcc--CCCCCCEEEccCcc
Q 037786 89 DVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLS--NLHQLTDVDLGSNS 166 (565)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~ 166 (565)
++++|.+++..+..|.++++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+. .+++|+.|++++|.
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 9999999877778899999999999999999988888899999999999999999876666544 56899999999998
Q ss_pred ccccCcC-CcCC---------------------------CCCCEEeccCCcccccCCCCCcCCCC--CCEEEcccccccC
Q 037786 167 FDGQFPD-IMNL---------------------------TRISRLDISNNQLTGSIPSHGSGLQN--LAVLRLYNNTLSG 216 (565)
Q Consensus 167 ~~~~~~~-~~~~---------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~--L~~L~l~~~~l~~ 216 (565)
+.+..+. +..+ ++|+.|++++|.+.+..+..+..++. |++|++++|.+..
T Consensus 183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~ 262 (680)
T 1ziw_A 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262 (680)
T ss_dssp CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc
Confidence 8766554 3332 56778888888888777777877654 9999999998887
Q ss_pred CCchhhcCCCCCCEEEccCCcccccCCC--CCCCCCcEEEccCCcccc-----CCc----hhhhcCCCcCcccccccccc
Q 037786 217 TIPSWLFTLPLLRDIDLSDNQLTGHLDA--FPSKSLRKLYLTNNRLHG-----SIP----SSIFELANLTYLSLASNNFS 285 (565)
Q Consensus 217 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~-----~~~----~~~~~~~~L~~L~l~~n~~~ 285 (565)
..+..+..+++|+.|++++|.+.+..+. ...++|+.|+++++...+ .++ ..+..+++|++|++++|.+.
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~ 342 (680)
T 1ziw_A 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC
T ss_pred cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccC
Confidence 7777888899999999999988865543 267889999998765432 112 25677889999999999987
Q ss_pred CccChHhhhcCCCCCEEEccCCccccccCCc-ccC--CCCCccEEEcCCCCCCCCCc-hhhc-cccceEeccCCcCcccC
Q 037786 286 GIVEPYMLAKLVNLAALELSHNSLSFGTTSK-VNS--SFPQIFILSLSACNISAFPS-FLRS-LELAYLDLSENNIDGQI 360 (565)
Q Consensus 286 ~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~-~~~--~~~~L~~L~l~~~~l~~l~~-~~~~-~~L~~L~l~~n~l~~~~ 360 (565)
+. .+..+..+++|++|++++|.+....... .+. ..++|+.|++++|+++.++. .+.. .+|+.|++++|.+.+.+
T Consensus 343 ~~-~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 421 (680)
T 1ziw_A 343 GI-KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421 (680)
T ss_dssp CC-CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEEC
T ss_pred CC-ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcccc
Confidence 64 4467888999999999998754322221 111 23579999999999886543 3333 38999999999998777
Q ss_pred ChhhhhhCCCCccEEEcCCCccCCccCC---CCCCCCeEEcCCCcccc--cCCC---CCCCCcEEEccccccCccchhhh
Q 037786 361 PNWMWEVGKDTLSFLDLSHNFITEMKQI---PWKNLKYLKLQSNLLQG--PLPV---PPPRLQFLLASNNQFTGEIIQSI 432 (565)
Q Consensus 361 ~~~~~~~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~--~~~~---~~~~L~~L~l~~n~i~~~~~~~l 432 (565)
+...+. ++++|+.|++++|+++.+.+. .+++|+.|++++|.+.. ..|. .+++|++|++++|++++..+..+
T Consensus 422 ~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 500 (680)
T 1ziw_A 422 TGQEWR-GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDML 500 (680)
T ss_dssp CSGGGT-TCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred Cccccc-CcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhh
Confidence 754443 678999999999998887663 56899999999998763 3333 37899999999999998777777
Q ss_pred hhcCCCCCCccccccCCCCCcEEeCcCCCCCCCc-----------ccCCCcccEEECCCCcccccCC---CCCCCCcEee
Q 037786 433 CSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMK-----------QISWKNLGYLDLRSNLLQGPLL---VPPSSLRVIL 498 (565)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-----------~~~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~ 498 (565)
..+ ++|++|++++|.++.++ ...+++|+.|++++|.++...+ ..+++|++|+
T Consensus 501 ~~l--------------~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~ 566 (680)
T 1ziw_A 501 EGL--------------EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID 566 (680)
T ss_dssp TTC--------------TTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccc--------------cccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeE
Confidence 777 99999999999998752 1567899999999999885322 3789999999
Q ss_pred ccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCCCC-CCCCCcccccC
Q 037786 499 ILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIG-NFSPWCQTKWP 548 (565)
Q Consensus 499 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l~-~l~~L~~l~~~ 548 (565)
+++|.+++..+..|..+++|+.|++++|.+....|+.++ .+++|+.+++.
T Consensus 567 Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~ 617 (680)
T 1ziw_A 567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 617 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECT
T ss_pred CCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEcc
Confidence 999999987777889999999999999999865555454 56666555444
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-50 Score=423.12 Aligned_cols=506 Identities=19% Similarity=0.185 Sum_probs=395.7
Q ss_pred CcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCC-CCCCCCCCcEEEc
Q 037786 12 LQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFP-RSNWTSPLRCLDV 90 (565)
Q Consensus 12 L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~l 90 (565)
-++++.++..+..++. .+|+++++|++++|.+++..+.+|.++++|++|++++| .+....+ .+..+++|++|++
T Consensus 14 ~~~~~c~~~~l~~iP~----~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L 88 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPG----TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVL 88 (606)
T ss_dssp TTEEECTTSCCSSCCT----TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEEC
T ss_pred CceEECCCCCcccCcC----CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCC-ccceeChhhccCccccCeeeC
Confidence 3467777777765542 34578899999999888777888889999999999988 5555444 4455688999999
Q ss_pred cCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCcccccc
Q 037786 91 SGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQ 170 (565)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 170 (565)
++|.+++..|..|.++++|++|++++|.++...+..+.++++|++|++++|.+.+.....+..+++|++|++++|.+...
T Consensus 89 s~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 168 (606)
T 3t6q_A 89 TANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL 168 (606)
T ss_dssp TTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEE
T ss_pred CCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccccc
Confidence 99988877788888899999999999888877777888889999999999888864444555588999999999888766
Q ss_pred CcC-CcCCCCCC--EEeccCCcccccCCCCCcCCCCCCEEEccccccc--------------------------CCCchh
Q 037786 171 FPD-IMNLTRIS--RLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLS--------------------------GTIPSW 221 (565)
Q Consensus 171 ~~~-~~~~~~L~--~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~--------------------------~~~~~~ 221 (565)
.+. ++.+++|+ .+++++|.+.+..+..+.. .+|+.++++++... ...+..
T Consensus 169 ~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~ 247 (606)
T 3t6q_A 169 SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247 (606)
T ss_dssp CHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGG
T ss_pred ChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhH
Confidence 554 77888888 8888888888776665543 57888888776410 111122
Q ss_pred hcCCC--CCCEEEccCCcccccCCC--CCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCC
Q 037786 222 LFTLP--LLRDIDLSDNQLTGHLDA--FPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLV 297 (565)
Q Consensus 222 l~~~~--~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~ 297 (565)
+..+. +++.+++++|.+.+.... ...++|++|++++|.++ .+|..+..+++|++|++++|.+... .+..+..++
T Consensus 248 ~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~ 325 (606)
T 3t6q_A 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENL-CQISASNFP 325 (606)
T ss_dssp GGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBG-GGGCGGGCT
T ss_pred hchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcC-chhhhhccC
Confidence 22222 688899999988876554 26688999999999988 6777888889999999999998754 345688899
Q ss_pred CCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCC---chhhc-cccceEeccCCcCcccCChhhhhhCCCCcc
Q 037786 298 NLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFP---SFLRS-LELAYLDLSENNIDGQIPNWMWEVGKDTLS 373 (565)
Q Consensus 298 ~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~---~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~ 373 (565)
+|++|++++|.+....+...+..+++|+.|++++|.+..++ ..+.. .+|++|++++|.+.+..+..+. .+++|+
T Consensus 326 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~ 403 (606)
T 3t6q_A 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK--ECPQLE 403 (606)
T ss_dssp TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT--TCTTCS
T ss_pred cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhc--CCccCC
Confidence 99999999998876666665678899999999999988653 23333 3899999999998866666655 568999
Q ss_pred EEEcCCCccCCccC----CCCCCCCeEEcCCCcccccCCCC---CCCCcEEEccccccCccch---hhhhhcCCCCCCcc
Q 037786 374 FLDLSHNFITEMKQ----IPWKNLKYLKLQSNLLQGPLPVP---PPRLQFLLASNNQFTGEII---QSICSSSTLEIPSW 443 (565)
Q Consensus 374 ~L~ls~n~l~~~~~----~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~i~~~~~---~~l~~~~~~~~~~~ 443 (565)
.|++++|.++...+ ..+++|++|++++|.+.+..+.. +++|++|++++|++++... ..+..+
T Consensus 404 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l-------- 475 (606)
T 3t6q_A 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL-------- 475 (606)
T ss_dssp EEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGC--------
T ss_pred eEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccC--------
Confidence 99999999887654 26788999999999988766543 8899999999999886322 456666
Q ss_pred ccccCCCCCcEEeCcCCCCCCC-cc--cCCCcccEEECCCCcccccCCC---CCCCCcEeeccCceeeeccchhhhcCCC
Q 037786 444 ISEIGKDSLSYLNLSHNFITKM-KQ--ISWKNLGYLDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEIIHSICDIIA 517 (565)
Q Consensus 444 ~~~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~ 517 (565)
++|++|++++|.++++ |. ..+++|+.|++++|++++..+. .+++| .|++++|.+++..+..++.+++
T Consensus 476 ------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~ 548 (606)
T 3t6q_A 476 ------GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQ 548 (606)
T ss_dssp ------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHT
T ss_pred ------CCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCC
Confidence 8999999999999988 44 7788999999999999875554 77888 9999999999888888999999
Q ss_pred CCEEeCCCCcCcccCCCCCCCCCCCcccccCCCCcc
Q 037786 518 LDVLDLSNNRLSGTIPKCIGNFSPWCQTKWPSRWSA 553 (565)
Q Consensus 518 L~~L~l~~n~~~~~~p~~l~~l~~L~~l~~~~~~~~ 553 (565)
|+.|++++|++.|. |.+.|...|++
T Consensus 549 L~~L~l~~N~~~c~-----------c~~~~~~~w~~ 573 (606)
T 3t6q_A 549 QRTINLRQNPLDCT-----------CSNIYFLEWYK 573 (606)
T ss_dssp SSEEECTTCCEECS-----------GGGHHHHHHHH
T ss_pred CCEEeCCCCCcccc-----------CCcHHHHHHHH
Confidence 99999999999987 55555555554
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-48 Score=414.54 Aligned_cols=507 Identities=21% Similarity=0.181 Sum_probs=332.5
Q ss_pred CcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCC-CCCCCCCcEEEc
Q 037786 12 LQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPR-SNWTSPLRCLDV 90 (565)
Q Consensus 12 L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~-~~~~~~L~~L~l 90 (565)
-++++.++++++.++. ..++++++|++++|.+++..+.+|.++++|++|++++| .+.+..+. +..+++|++|++
T Consensus 13 ~~~~~c~~~~l~~ip~----~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~L 87 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPD----DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLIL 87 (606)
T ss_dssp TTEEECTTSCCSSCCT----TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEEC
T ss_pred CCceEccCCCcccCCC----CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeEC
Confidence 3678999988887654 34588999999999999888888999999999999998 56665444 455699999999
Q ss_pred cCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccc-cCCcCccCCCCCCEEEccCccccc
Q 037786 91 SGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSG-HIPPSLSNLHQLTDVDLGSNSFDG 169 (565)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~ 169 (565)
++|.+++..|..|.++++|++|++++|.+....+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+..
T Consensus 88 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 88 TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp TTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred CCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 9999987778999999999999999999988777889999999999999999875 568889999999999999999887
Q ss_pred cCcC-CcCCCCC----CEEeccCCcccccCCCCCcCCCCCCEEEccccccc-CCCchhhcCCCCCCEEEccCCcccccCC
Q 037786 170 QFPD-IMNLTRI----SRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLS-GTIPSWLFTLPLLRDIDLSDNQLTGHLD 243 (565)
Q Consensus 170 ~~~~-~~~~~~L----~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 243 (565)
..+. ++.+++| ..+++++|.+.+..+..+... +|+.|++++|.+. ...+..+..++.++.+.+..+.+.....
T Consensus 168 ~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 246 (606)
T 3vq2_A 168 ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246 (606)
T ss_dssp ECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred cChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCc
Confidence 6654 6655554 489999999987666666554 8999999999875 3456677788888877765443321100
Q ss_pred ----------CCCCCCCcEEEc-cCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccc
Q 037786 244 ----------AFPSKSLRKLYL-TNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFG 312 (565)
Q Consensus 244 ----------~~~~~~L~~L~l-~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~ 312 (565)
....-.++.+++ ..+.+.+..+. +..+++|+.+++++|.+... + .+..+++|++|++++|.+. .
T Consensus 247 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l-~--~l~~~~~L~~L~l~~n~l~-~ 321 (606)
T 3vq2_A 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYL-E--DVPKHFKWQSLSIIRCQLK-Q 321 (606)
T ss_dssp CSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCC-C--CCCTTCCCSEEEEESCCCS-S
T ss_pred ccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhh-h--hccccccCCEEEcccccCc-c
Confidence 001113444444 34444444443 55566666666666665432 2 4555566666666666652 2
Q ss_pred cCCcccCCCCCccEEEcCCCCCCCCCchhhccccceEeccCCcCccc--CChhhhhhCCCCccEEEcCCCccCCccCC--
Q 037786 313 TTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQ--IPNWMWEVGKDTLSFLDLSHNFITEMKQI-- 388 (565)
Q Consensus 313 ~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-- 388 (565)
.+ .+ .+++|+.|++++|....-..+....+|++|++++|.+++. .+..+. .+++|+.|++++|.++.++..
T Consensus 322 lp-~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~ 396 (606)
T 3vq2_A 322 FP-TL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDL--GTNSLRHLDLSFNGAIIMSANFM 396 (606)
T ss_dssp CC-CC--CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHH--CCSCCCEEECCSCSEEEECCCCT
T ss_pred cc-cC--CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhc--cCCcccEeECCCCccccchhhcc
Confidence 22 22 5566666666666333111222223566666666665533 233333 456666666666666555532
Q ss_pred CCCCCCeEEcCCCcccccCCC----CCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCC
Q 037786 389 PWKNLKYLKLQSNLLQGPLPV----PPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITK 464 (565)
Q Consensus 389 ~~~~L~~L~l~~n~~~~~~~~----~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 464 (565)
.+++|+.|++++|++.+..+. .+++|++|++++|++++..+..+..+ ++|++|++++|.+.+
T Consensus 397 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--------------~~L~~L~l~~n~l~~ 462 (606)
T 3vq2_A 397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL--------------TSLNTLKMAGNSFKD 462 (606)
T ss_dssp TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTC--------------TTCCEEECTTCEEGG
T ss_pred CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCC--------------CCCCEEECCCCcCCC
Confidence 455666666666666554331 25666666666666665555555555 666666666666655
Q ss_pred -C-cc--cCCCcccEEECCCCcccccCCC---CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCCCC
Q 037786 465 -M-KQ--ISWKNLGYLDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIG 537 (565)
Q Consensus 465 -~-~~--~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l~ 537 (565)
. |. ..+++|+.|++++|.+++..+. .+++|++|++++|.+++..|..++.+++|++|++++|++. .+|+++.
T Consensus 463 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~ 541 (606)
T 3vq2_A 463 NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQ 541 (606)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGG
T ss_pred cchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHh
Confidence 2 32 4556666666666666554332 5566666666666666555666666666666666666665 5555555
Q ss_pred CCC-CCcccccCC
Q 037786 538 NFS-PWCQTKWPS 549 (565)
Q Consensus 538 ~l~-~L~~l~~~~ 549 (565)
.++ +|+.+++.+
T Consensus 542 ~l~~~L~~l~l~~ 554 (606)
T 3vq2_A 542 HFPKSLAFFNLTN 554 (606)
T ss_dssp GSCTTCCEEECCS
T ss_pred hhcccCcEEEccC
Confidence 554 355555544
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-48 Score=409.93 Aligned_cols=481 Identities=21% Similarity=0.197 Sum_probs=405.2
Q ss_pred CCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCC-CCCCCCCCcEE
Q 037786 10 TKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFP-RSNWTSPLRCL 88 (565)
Q Consensus 10 ~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L 88 (565)
+++++|++++|.+..+.+.+|.++ ++|++|++++|+++...|.+|.++++|++|++++| ...+..+ .+..+++|++|
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRL-INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALKHL 110 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTC-TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCSEECTTTTSSCTTCCEE
T ss_pred CcCcEEEccCCccCcCChhHhccC-ccceEEECCCCccceeChhhccCccccCeeeCCCC-cccccChhhhcccccccEe
Confidence 368999999999999988899998 99999999999999888999999999999999999 5655544 44556999999
Q ss_pred EccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCC--EEEccCcc
Q 037786 89 DVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLT--DVDLGSNS 166 (565)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~--~L~l~~~~ 166 (565)
++++|.+++..+..+.++++|++|++++|.+.......+..+++|++|++++|.+.+..+..+..+++|+ .+++++|.
T Consensus 111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190 (606)
T ss_dssp ECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred eccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCc
Confidence 9999999976678899999999999999999876656666699999999999999987788899999999 89999999
Q ss_pred ccccCcCCcCCCCCCEEeccCCccc--------------------------ccCCCCCcCCC--CCCEEEcccccccCCC
Q 037786 167 FDGQFPDIMNLTRISRLDISNNQLT--------------------------GSIPSHGSGLQ--NLAVLRLYNNTLSGTI 218 (565)
Q Consensus 167 ~~~~~~~~~~~~~L~~L~l~~~~~~--------------------------~~~~~~~~~~~--~L~~L~l~~~~l~~~~ 218 (565)
+.+..+.......|+.++++++... ...+..+..+. +++.+++++|.+....
T Consensus 191 l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~ 270 (606)
T 3t6q_A 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270 (606)
T ss_dssp CCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCC
T ss_pred cCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccC
Confidence 9988877666678999998876411 00111122222 7899999999999877
Q ss_pred chhhcCCCCCCEEEccCCcccccCCCC-CCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCC
Q 037786 219 PSWLFTLPLLRDIDLSDNQLTGHLDAF-PSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLV 297 (565)
Q Consensus 219 ~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~ 297 (565)
+..+..+++|+.|++++|.+...+... ..++|++|++++|.+++..+..+..+++|+.|++++|.+...++...+..++
T Consensus 271 ~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 271 SNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred HHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 888999999999999999998665444 6689999999999999777888999999999999999988776667789999
Q ss_pred CCCEEEccCCccccccC-CcccCCCCCccEEEcCCCCCCCCC-chhhc-cccceEeccCCcCcccCChhhhhhCCCCccE
Q 037786 298 NLAALELSHNSLSFGTT-SKVNSSFPQIFILSLSACNISAFP-SFLRS-LELAYLDLSENNIDGQIPNWMWEVGKDTLSF 374 (565)
Q Consensus 298 ~L~~L~l~~~~i~~~~~-~~~~~~~~~L~~L~l~~~~l~~l~-~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~ 374 (565)
+|++|++++|.+..... ...+..+++|+.|++++|.+..++ ..+.. .+|+.|++++|.+.+..+...+. .+++|+.
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~ 429 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ-NLHLLKV 429 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTT-TCTTCCE
T ss_pred cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhh-CcccCCE
Confidence 99999999999986542 223478899999999999998553 33333 39999999999998665554332 6799999
Q ss_pred EEcCCCccCCccCC---CCCCCCeEEcCCCcccccC------CCCCCCCcEEEccccccCccchhhhhhcCCCCCCcccc
Q 037786 375 LDLSHNFITEMKQI---PWKNLKYLKLQSNLLQGPL------PVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWIS 445 (565)
Q Consensus 375 L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~------~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~ 445 (565)
|++++|.++...+. .+++|++|++++|++.+.. ...+++|++|++++|++++..+..+..+
T Consensus 430 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l---------- 499 (606)
T 3t6q_A 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL---------- 499 (606)
T ss_dssp EECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTC----------
T ss_pred EECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccc----------
Confidence 99999999887763 6789999999999998632 1238999999999999998888888888
Q ss_pred ccCCCCCcEEeCcCCCCCCC-cc--cCCCcccEEECCCCcccccCCC---CCCCCcEeeccCceeeecc
Q 037786 446 EIGKDSLSYLNLSHNFITKM-KQ--ISWKNLGYLDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEI 508 (565)
Q Consensus 446 ~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~ 508 (565)
++|++|++++|++++. |. ..++.| .|++++|.+++..+. .+++|++|++++|+++...
T Consensus 500 ----~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 500 ----KMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp ----TTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred ----cCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence 9999999999999998 54 778889 999999999975554 6789999999999998643
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-48 Score=421.65 Aligned_cols=486 Identities=21% Similarity=0.252 Sum_probs=334.8
Q ss_pred cEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCcc-CCCCCCCCCCcEEEcc
Q 037786 13 QLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGV-FPRSNWTSPLRCLDVS 91 (565)
Q Consensus 13 ~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~-~~~~~~~~~L~~L~l~ 91 (565)
+..+.++++++.++. +|+++++|++++|.++...+..|.++++|++|++++|...... ...+..+++|++|+++
T Consensus 7 ~~~dcs~~~L~~vP~-----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ-----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSSCCCS-----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCCCCCC-----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 356666666665542 4567777777777777666777777777777777776322222 2233444777777777
Q ss_pred CCccCccCCccccCCCCCCEEEcccccCcccCchh--ccCCCCCCeeeccCCcccccCC-cCccCCCCCCEEEccCcccc
Q 037786 92 GTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPAS--LGNVTQLAVLSLSFKSFSGHIP-PSLSNLHQLTDVDLGSNSFD 168 (565)
Q Consensus 92 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~ 168 (565)
+|.+.+..|..|.++++|++|++++|.+.+..+.. |.++++|++|++++|.+.+..+ ..++++++|++|++++|.+.
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 77777666777777777777777777766544443 6777777777777777765433 45677777777777777766
Q ss_pred ccCcC-CcCC--CCCCEEeccCCcccccCCCCCcCCCC------CCEEEcccccccCCCchhh-----------------
Q 037786 169 GQFPD-IMNL--TRISRLDISNNQLTGSIPSHGSGLQN------LAVLRLYNNTLSGTIPSWL----------------- 222 (565)
Q Consensus 169 ~~~~~-~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~------L~~L~l~~~~l~~~~~~~l----------------- 222 (565)
...+. +..+ ++|+.|++++|.+.+..+..+..+++ |+.|++++|.+....+..+
T Consensus 162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred eeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence 54443 4444 66777777777766655555554444 7777777765543332222
Q ss_pred -------------------cC--CCCCCEEEccCCcccccCCCC--CCCCCcEEEccCCccccCCchhhhcCCCcCcccc
Q 037786 223 -------------------FT--LPLLRDIDLSDNQLTGHLDAF--PSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSL 279 (565)
Q Consensus 223 -------------------~~--~~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 279 (565)
.. .++|+.|++++|.+.+..+.. ..++|+.|++++|.+.+..+..+..+++|+.|++
T Consensus 242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 321 (844)
T 3j0a_A 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321 (844)
T ss_dssp CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEE
T ss_pred cccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEEC
Confidence 22 256777888877776544332 5677788888888777666667777778888888
Q ss_pred ccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCchhhccccceEeccCCcCccc
Q 037786 280 ASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQ 359 (565)
Q Consensus 280 ~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~ 359 (565)
++|.+... .+..+..+++|+.|++++|.+.......+ ..+++|+.|++++|.++.++. ..+|+.+++++|+++ .
T Consensus 322 s~N~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~i~~---~~~L~~L~l~~N~l~-~ 395 (844)
T 3j0a_A 322 SYNLLGEL-YSSNFYGLPKVAYIDLQKNHIAIIQDQTF-KFLEKLQTLDLRDNALTTIHF---IPSIPDIFLSGNKLV-T 395 (844)
T ss_dssp ESCCCSCC-CSCSCSSCTTCCEEECCSCCCCCCCSSCS-CSCCCCCEEEEETCCSCCCSS---CCSCSEEEEESCCCC-C
T ss_pred CCCCCCcc-CHHHhcCCCCCCEEECCCCCCCccChhhh-cCCCCCCEEECCCCCCCcccC---CCCcchhccCCCCcc-c
Confidence 88877644 33456777788888888887765444433 667788888888887776554 336778888888777 4
Q ss_pred CChhhhhhCCCCccEEEcCCCccCCccC----CCCCCCCeEEcCCCcccccC----CCCCCCCcEEEccccccCccch--
Q 037786 360 IPNWMWEVGKDTLSFLDLSHNFITEMKQ----IPWKNLKYLKLQSNLLQGPL----PVPPPRLQFLLASNNQFTGEII-- 429 (565)
Q Consensus 360 ~~~~~~~~~~~~L~~L~ls~n~l~~~~~----~~~~~L~~L~l~~n~~~~~~----~~~~~~L~~L~l~~n~i~~~~~-- 429 (565)
+|.. ...++.+++++|.++.++. ..+++|+.|++++|++.+.. +..+++|++|++++|.++...+
T Consensus 396 l~~~-----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~ 470 (844)
T 3j0a_A 396 LPKI-----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETE 470 (844)
T ss_dssp CCCC-----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSC
T ss_pred cccc-----ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccc
Confidence 5442 3567888888888887765 26788889999988887533 2347888899999988873322
Q ss_pred ---hhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cc--cCCCcccEEECCCCcccccCCC-CCCCCcEeeccCc
Q 037786 430 ---QSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQ--ISWKNLGYLDLRSNLLQGPLLV-PPSSLRVILILNN 502 (565)
Q Consensus 430 ---~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~l~~n 502 (565)
..+..+ ++|++|++++|.++.+ |. ..+++|+.|++++|.+++..+. ..++|+.|++++|
T Consensus 471 ~~~~~~~~l--------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N 536 (844)
T 3j0a_A 471 LCWDVFEGL--------------SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRN 536 (844)
T ss_dssp CCSSCSSCB--------------CCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEE
T ss_pred cchhhhcCc--------------ccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCC
Confidence 233333 8899999999999988 43 6788999999999999874444 4488999999999
Q ss_pred eeeeccchhhhcCCCCCEEeCCCCcCccc
Q 037786 503 QFTGEIIHSICDIIALDVLDLSNNRLSGT 531 (565)
Q Consensus 503 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 531 (565)
.+++..|..| ++|+.|++++|++.|.
T Consensus 537 ~l~~~~~~~~---~~L~~l~l~~Np~~C~ 562 (844)
T 3j0a_A 537 QLLAPNPDVF---VSLSVLDITHNKFICE 562 (844)
T ss_dssp CCCCCCSCCC---SSCCEEEEEEECCCCS
T ss_pred cCCCCChhHh---CCcCEEEecCCCcccc
Confidence 9988887654 5889999999999876
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-47 Score=399.50 Aligned_cols=488 Identities=19% Similarity=0.159 Sum_probs=385.3
Q ss_pred ccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCC-CCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEcc
Q 037786 37 LTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFP-RSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLS 115 (565)
Q Consensus 37 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~ 115 (565)
-++++.+++.++ .+|..+. +++++|++++| .+.+..+ .+..+++|++|++++|.+++..|..|.++++|++|+++
T Consensus 13 ~~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 13 NITYQCMDQKLS-KVPDDIP--SSTKNIDLSFN-PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp TTEEECTTSCCS-SCCTTSC--TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCceEccCCCcc-cCCCCCC--CCcCEEECCCC-CcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence 467888888887 5665554 78999999998 5555555 44555899999999998887778888899999999999
Q ss_pred cccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccc--cCcCCcCCCCCCEEeccCCccccc
Q 037786 116 QCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDG--QFPDIMNLTRISRLDISNNQLTGS 193 (565)
Q Consensus 116 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~ 193 (565)
+|.++...|.+|+++++|++|++++|.+.+..+..++++++|++|++++|.+.. .+..++++++|++|++++|.+++.
T Consensus 89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp TCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred CCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 999888888889999999999999998887666788899999999999998874 344588899999999999988877
Q ss_pred CCCCCcCCCCCC----EEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCC---CCCCCCcEEEccCCcccc----
Q 037786 194 IPSHGSGLQNLA----VLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDA---FPSKSLRKLYLTNNRLHG---- 262 (565)
Q Consensus 194 ~~~~~~~~~~L~----~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~---- 262 (565)
.+..+..+++|+ .+++++|.+....+..+... +|+.|++++|.+.+.... ...+.++.+++....+.+
T Consensus 169 ~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l 247 (606)
T 3vq2_A 169 TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247 (606)
T ss_dssp CTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred ChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcc
Confidence 777777666554 79999998875555555544 788999988877521111 145566666654333221
Q ss_pred --CCchhhhcCC--CcCcccc-ccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCC
Q 037786 263 --SIPSSIFELA--NLTYLSL-ASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAF 337 (565)
Q Consensus 263 --~~~~~~~~~~--~L~~L~l-~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l 337 (565)
.....+..+. .++.+++ ..+.+.+..+ . +..+++|+.|+++++.+.... ....+++|+.|++++|.+..+
T Consensus 248 ~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~-~-~~~l~~L~~L~l~~~~~~~l~---~l~~~~~L~~L~l~~n~l~~l 322 (606)
T 3vq2_A 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIV-K-FHCLANVSAMSLAGVSIKYLE---DVPKHFKWQSLSIIRCQLKQF 322 (606)
T ss_dssp SCCCGGGGTTGGGSEEEEEEECCCTTCCGGGG-S-CGGGTTCSEEEEESCCCCCCC---CCCTTCCCSEEEEESCCCSSC
T ss_pred cccChHHhhhhhhccHhheecccccccccccc-c-cccCCCCCEEEecCccchhhh---hccccccCCEEEcccccCccc
Confidence 1111121111 3455555 4455555543 2 788999999999999986543 347789999999999999999
Q ss_pred CchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCcc--C---CCCCCCCeEEcCCCcccccCC--CC
Q 037786 338 PSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMK--Q---IPWKNLKYLKLQSNLLQGPLP--VP 410 (565)
Q Consensus 338 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~--~---~~~~~L~~L~l~~n~~~~~~~--~~ 410 (565)
|.+ ...+|+.|++++|...+..+. ..+++|+.|++++|.++... + ..+++|++|++++|.+.+... ..
T Consensus 323 p~~-~l~~L~~L~l~~n~~~~~~~~----~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 397 (606)
T 3vq2_A 323 PTL-DLPFLKSLTLTMNKGSISFKK----VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMG 397 (606)
T ss_dssp CCC-CCSSCCEEEEESCSSCEECCC----CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTT
T ss_pred ccC-CCCccceeeccCCcCccchhh----ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccC
Confidence 966 555999999999966544422 26799999999999998874 2 378999999999999886432 23
Q ss_pred CCCCcEEEccccccCccch-hhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cc--cCCCcccEEECCCCccccc
Q 037786 411 PPRLQFLLASNNQFTGEII-QSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQ--ISWKNLGYLDLRSNLLQGP 486 (565)
Q Consensus 411 ~~~L~~L~l~~n~i~~~~~-~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~ls~n~l~~~ 486 (565)
+++|++|++++|++++..+ ..+..+ ++|++|++++|.+... |. ..+++|+.|++++|.+++.
T Consensus 398 l~~L~~L~l~~n~l~~~~~~~~~~~l--------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 463 (606)
T 3vq2_A 398 LEELQHLDFQHSTLKRVTEFSAFLSL--------------EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN 463 (606)
T ss_dssp CTTCCEEECTTSEEESTTTTTTTTTC--------------TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCCCCeeECCCCccCCccChhhhhcc--------------ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCc
Confidence 8999999999999998776 567777 9999999999999988 54 7889999999999999873
Q ss_pred -CCC---CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCCCCCCCCCcccccCCCCcc
Q 037786 487 -LLV---PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSPWCQTKWPSRWSA 553 (565)
Q Consensus 487 -~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~l~~~~~~~~ 553 (565)
.+. .+++|++|++++|.+++..+..++.+++|++|++++|++.+..|+.++.+++|+.|++.+..+.
T Consensus 464 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 464 TLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred chHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 343 7899999999999999999999999999999999999999888999999999999999997765
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-45 Score=403.40 Aligned_cols=472 Identities=23% Similarity=0.215 Sum_probs=364.8
Q ss_pred CCCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCccc-ccCCccccCCCCCCEEecCCCCCCCccCC-CCCCCCCCc
Q 037786 9 VTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQ-GEFPENIFRLSNLQMVRLKFNSNLSGVFP-RSNWTSPLR 86 (565)
Q Consensus 9 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~ 86 (565)
.+++++|++++|.+..+.+..|..+ ++|++|++++|... ...+.+|.++++|++|++++| .+....+ .+..+++|+
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l-~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~ 100 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFL-EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLF 100 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSC-CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-CCCEECTTSSCSCSSCC
T ss_pred CCCcCEEECCCCcCCccChhHCccc-ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-cCcccCHhHccCCcccC
Confidence 3567777888777777777777777 77777777777433 233667777777777777777 4444433 444457777
Q ss_pred EEEccCCccCccCCcc--ccCCCCCCEEEcccccCcccCc-hhccCCCCCCeeeccCCcccccCCcCccCC--CCCCEEE
Q 037786 87 CLDVSGTRFSGQLPDS--ICNLRHLRELHLSQCNFYGFLP-ASLGNVTQLAVLSLSFKSFSGHIPPSLSNL--HQLTDVD 161 (565)
Q Consensus 87 ~L~l~~~~~~~~~~~~--~~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~ 161 (565)
+|++++|.+++..+.. |.++++|++|++++|.+.+..+ ..|+++++|++|++++|.+.+..+..+..+ ++|+.|+
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS 180 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE
T ss_pred EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE
Confidence 7777777777555444 7777777777777777765543 467777777777777777776666666665 6777777
Q ss_pred ccCccccccCcC-CcCCCC------CCEEeccCCcccccCCC------------------------------------CC
Q 037786 162 LGSNSFDGQFPD-IMNLTR------ISRLDISNNQLTGSIPS------------------------------------HG 198 (565)
Q Consensus 162 l~~~~~~~~~~~-~~~~~~------L~~L~l~~~~~~~~~~~------------------------------------~~ 198 (565)
+++|.+....+. ++.+++ |+.|++++|.+.+..+. .+
T Consensus 181 L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f 260 (844)
T 3j0a_A 181 LAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTF 260 (844)
T ss_dssp ECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTT
T ss_pred CCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhh
Confidence 777776544332 444433 77777777754432221 12
Q ss_pred cC--CCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCC--CCCCCCcEEEccCCccccCCchhhhcCCCc
Q 037786 199 SG--LQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDA--FPSKSLRKLYLTNNRLHGSIPSSIFELANL 274 (565)
Q Consensus 199 ~~--~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 274 (565)
.. .++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+. ...++|++|++++|.+++..+..+..+++|
T Consensus 261 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 340 (844)
T 3j0a_A 261 AGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKV 340 (844)
T ss_dssp TTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTC
T ss_pred hccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCC
Confidence 22 26899999999999877788899999999999999999876543 267899999999999997778889999999
Q ss_pred CccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCchhhccccceEeccCC
Q 037786 275 TYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSEN 354 (565)
Q Consensus 275 ~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n 354 (565)
+.|++++|.+... ++..+..+++|+.|++++|.++.. ..+++|+.+++++|+++.+|.. ...++.+++++|
T Consensus 341 ~~L~L~~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~i------~~~~~L~~L~l~~N~l~~l~~~--~~~l~~L~ls~N 411 (844)
T 3j0a_A 341 AYIDLQKNHIAII-QDQTFKFLEKLQTLDLRDNALTTI------HFIPSIPDIFLSGNKLVTLPKI--NLTANLIHLSEN 411 (844)
T ss_dssp CEEECCSCCCCCC-CSSCSCSCCCCCEEEEETCCSCCC------SSCCSCSEEEEESCCCCCCCCC--CTTCCEEECCSC
T ss_pred CEEECCCCCCCcc-ChhhhcCCCCCCEEECCCCCCCcc------cCCCCcchhccCCCCccccccc--ccccceeecccC
Confidence 9999999999754 445788999999999999998743 3378999999999999988754 337999999999
Q ss_pred cCcccCChhhhhhCCCCccEEEcCCCccCCccCC----CCCCCCeEEcCCCcccccCC--------CCCCCCcEEEcccc
Q 037786 355 NIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI----PWKNLKYLKLQSNLLQGPLP--------VPPPRLQFLLASNN 422 (565)
Q Consensus 355 ~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~----~~~~L~~L~l~~n~~~~~~~--------~~~~~L~~L~l~~n 422 (565)
.+++ ++.......+++|+.|++++|+++..+.. .+++|+.|++++|.+....+ ..+++|++|++++|
T Consensus 412 ~l~~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N 490 (844)
T 3j0a_A 412 RLEN-LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN 490 (844)
T ss_dssp CCCS-STTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHH
T ss_pred cccc-CchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCC
Confidence 9984 44433333689999999999999976552 56899999999999874322 23799999999999
Q ss_pred ccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcc-cCCCcccEEECCCCcccccCCCCCCCCcEeeccC
Q 037786 423 QFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQ-ISWKNLGYLDLRSNLLQGPLLVPPSSLRVILILN 501 (565)
Q Consensus 423 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~ 501 (565)
++++..+..+..+ ++|++|++++|+++.+|. ...++|+.|++++|.+++..+..+.+|+.|++++
T Consensus 491 ~l~~~~~~~~~~l--------------~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~L~~l~l~~ 556 (844)
T 3j0a_A 491 YLNSLPPGVFSHL--------------TALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITH 556 (844)
T ss_dssp HHTTCCTTSSSSC--------------CSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCCCCSCCCSSCCEEEEEE
T ss_pred cccccChhHccch--------------hhhheeECCCCCCCccChhhhhccccEEECCCCcCCCCChhHhCCcCEEEecC
Confidence 9998888888887 999999999999999954 3348999999999999998888888999999999
Q ss_pred ceeee
Q 037786 502 NQFTG 506 (565)
Q Consensus 502 n~~~~ 506 (565)
|++..
T Consensus 557 Np~~C 561 (844)
T 3j0a_A 557 NKFIC 561 (844)
T ss_dssp ECCCC
T ss_pred CCccc
Confidence 99864
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-45 Score=381.67 Aligned_cols=493 Identities=20% Similarity=0.192 Sum_probs=390.5
Q ss_pred CcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCC-CCCCCCCcEEEc
Q 037786 12 LQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPR-SNWTSPLRCLDV 90 (565)
Q Consensus 12 L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~-~~~~~~L~~L~l 90 (565)
.+.++.++.++..++. .+|+++++|++++|.+++..+.+|..+++|++|++++| .+.+..+. +..+++|++|++
T Consensus 9 ~~~~~c~~~~l~~ip~----~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L 83 (570)
T 2z63_A 9 NITYQCMELNFYKIPD----NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLIL 83 (570)
T ss_dssp TTEEECCSSCCSSCCS----SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEEC
T ss_pred CcEEEeCCCCccccCC----CccccccEEEccCCccCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeC
Confidence 4567888777776543 34578999999999999888889999999999999999 56655444 455699999999
Q ss_pred cCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccc-cCCcCccCCCCCCEEEccCccccc
Q 037786 91 SGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSG-HIPPSLSNLHQLTDVDLGSNSFDG 169 (565)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~ 169 (565)
++|.++...+..|.++++|++|++++|.++...+..++++++|++|++++|.+.+ .+|..+.++++|++|++++|.+..
T Consensus 84 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 84 TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp TTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred cCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce
Confidence 9999997778899999999999999999987776679999999999999999886 468899999999999999999987
Q ss_pred cCcC-CcCCCCC----CEEeccCCcccccCCCCCcCCCCCCEEEcccccccC-CCchhhcCCCCCCEEEccCCccccc--
Q 037786 170 QFPD-IMNLTRI----SRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSG-TIPSWLFTLPLLRDIDLSDNQLTGH-- 241 (565)
Q Consensus 170 ~~~~-~~~~~~L----~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~l~~~~~L~~L~l~~~~~~~~-- 241 (565)
..+. ++.+++| ..+++++|.+.+..+..+... +|+.|++++|.... ..+..+..++.++...+....+...
T Consensus 164 ~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~ 242 (570)
T 2z63_A 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242 (570)
T ss_dssp ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSS
T ss_pred ecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchh
Confidence 6654 7777777 899999999998877777665 89999999985432 2345666777777666543322210
Q ss_pred ---CCCC-----CCCCCcEEEccCC-ccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccc
Q 037786 242 ---LDAF-----PSKSLRKLYLTNN-RLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFG 312 (565)
Q Consensus 242 ---~~~~-----~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~ 312 (565)
.... ..-.++.+++.++ .+.+..+..+..+++|+.+++++|.+... + ..+..+ +|++|++++|.+...
T Consensus 243 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-~-~~~~~~-~L~~L~l~~n~~~~l 319 (570)
T 2z63_A 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV-K-DFSYNF-GWQHLELVNCKFGQF 319 (570)
T ss_dssp CEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSC-C-BCCSCC-CCSEEEEESCBCSSC
T ss_pred hhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhh-h-hhhccC-CccEEeeccCccccc
Confidence 1111 1124567777776 66667777888889999999999988743 3 345666 999999999988732
Q ss_pred cCCcccCCCCCccEEEcCCCCCCCCCchhhccccceEeccCCcCcccC--ChhhhhhCCCCccEEEcCCCccCCccCC--
Q 037786 313 TTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQI--PNWMWEVGKDTLSFLDLSHNFITEMKQI-- 388 (565)
Q Consensus 313 ~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~~~L~~L~ls~n~l~~~~~~-- 388 (565)
.. ..+++|+.|++++|.+..........+|++|++++|.+++.. +..+. .+++|+.|++++|.++.++..
T Consensus 320 ~~----~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~ 393 (570)
T 2z63_A 320 PT----LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF--GTTSLKYLDLSFNGVITMSSNFL 393 (570)
T ss_dssp CB----CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHH--TCSCCCEEECCSCSEEEEEEEEE
T ss_pred Cc----ccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccccccccc--ccCccCEEECCCCcccccccccc
Confidence 22 467889999999998774443334448999999999888543 44444 678999999999998888763
Q ss_pred CCCCCCeEEcCCCcccccCC----CCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCC
Q 037786 389 PWKNLKYLKLQSNLLQGPLP----VPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITK 464 (565)
Q Consensus 389 ~~~~L~~L~l~~n~~~~~~~----~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 464 (565)
.+++|++|++++|.+.+..+ ..+++|++|++++|++++..+..+..+ ++|++|++++|.+.+
T Consensus 394 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--------------~~L~~L~l~~n~l~~ 459 (570)
T 2z63_A 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL--------------SSLEVLKMAGNSFQE 459 (570)
T ss_dssp TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTC--------------TTCCEEECTTCEEGG
T ss_pred ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcC--------------CcCcEEECcCCcCcc
Confidence 77899999999999887654 237899999999999988888778777 899999999999873
Q ss_pred --Ccc--cCCCcccEEECCCCcccccCCC---CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCC
Q 037786 465 --MKQ--ISWKNLGYLDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIP 533 (565)
Q Consensus 465 --~~~--~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p 533 (565)
+|. ..+++|+.|++++|++++..+. .+++|++|++++|.+++..+..|..+++|++|++++|++.|..|
T Consensus 460 ~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 460 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 354 7788999999999999876554 77899999999999998888888999999999999999998755
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-44 Score=373.11 Aligned_cols=476 Identities=20% Similarity=0.226 Sum_probs=348.4
Q ss_pred CCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEE
Q 037786 10 TKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLD 89 (565)
Q Consensus 10 ~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ 89 (565)
+...+.+.+++.++.++.. ++++|++|++++|++++..+.+|.++++|++|++++|
T Consensus 5 ~~~~~c~~~~~~l~~ip~~----~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-------------------- 60 (549)
T 2z81_A 5 DASGVCDGRSRSFTSIPSG----LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-------------------- 60 (549)
T ss_dssp CTTSEEECTTSCCSSCCSC----CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS--------------------
T ss_pred CCCceEECCCCcccccccc----CCCCccEEECcCCccCccChhhhhcCCcccEEECCCC--------------------
Confidence 3444456666666654432 2356777777777766555666666666666666555
Q ss_pred ccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccc-cCCcCccCCCCCCEEEccCcc-c
Q 037786 90 VSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSG-HIPPSLSNLHQLTDVDLGSNS-F 167 (565)
Q Consensus 90 l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~-~ 167 (565)
.+++..|..|.++++|++|++++|.+.+..+..|+++++|++|++++|.+.+ ..+..+.++++|++|++++|. +
T Consensus 61 ----~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~ 136 (549)
T 2z81_A 61 ----RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136 (549)
T ss_dssp ----CCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC
T ss_pred ----CcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccc
Confidence 4454555667777777888887777777666667777888888888777764 245667778888888888776 3
Q ss_pred cccCc-CCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccC----
Q 037786 168 DGQFP-DIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHL---- 242 (565)
Q Consensus 168 ~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~---- 242 (565)
....+ .+..+++|++|++++|.+.+..+..+..+++|++|+++.+.+.......+..+++|+.|++++|.+.+..
T Consensus 137 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 216 (549)
T 2z81_A 137 SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPL 216 (549)
T ss_dssp CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCC
T ss_pred cccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccccccccc
Confidence 44433 3777888888888888888777888888888888888888776333333456888888888888887532
Q ss_pred -CCCCCCCCcEEEccCCccccCCch----hhhcCCCcCccccccccccCccC-----hHhhhcCCCCCEEEccCCccccc
Q 037786 243 -DAFPSKSLRKLYLTNNRLHGSIPS----SIFELANLTYLSLASNNFSGIVE-----PYMLAKLVNLAALELSHNSLSFG 312 (565)
Q Consensus 243 -~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~n~~~~~~~-----~~~l~~~~~L~~L~l~~~~i~~~ 312 (565)
.....+.++.|+++++.+++..+. .+..+++|+.+++++|.+.+... ...+..+++++.+++.++.+...
T Consensus 217 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~ 296 (549)
T 2z81_A 217 PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQF 296 (549)
T ss_dssp SSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCG
T ss_pred chhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchh
Confidence 112457888999998887754333 33457889999999988764311 12346678899999998876532
Q ss_pred cC----CcccCCCCCccEEEcCCCCCCCCCchhh--ccccceEeccCCcCcccCChhh-hhhCCCCccEEEcCCCccCCc
Q 037786 313 TT----SKVNSSFPQIFILSLSACNISAFPSFLR--SLELAYLDLSENNIDGQIPNWM-WEVGKDTLSFLDLSHNFITEM 385 (565)
Q Consensus 313 ~~----~~~~~~~~~L~~L~l~~~~l~~l~~~~~--~~~L~~L~l~~n~l~~~~~~~~-~~~~~~~L~~L~ls~n~l~~~ 385 (565)
.. ..+....++++.|++++|.+..+|..+. ..+|+.|++++|++++.+|... ....+++|+.|++++|+++.+
T Consensus 297 ~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 376 (549)
T 2z81_A 297 YLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM 376 (549)
T ss_dssp GGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCH
T ss_pred hhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccccc
Confidence 11 1112335689999999999999987663 3499999999999986554321 112568999999999999887
Q ss_pred cC-----CCCCCCCeEEcCCCcccccCCC---CCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeC
Q 037786 386 KQ-----IPWKNLKYLKLQSNLLQGPLPV---PPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNL 457 (565)
Q Consensus 386 ~~-----~~~~~L~~L~l~~n~~~~~~~~---~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l 457 (565)
+. ..+++|++|++++|++.. .|. .+++|++|++++|++++. +.. +| ++|++|++
T Consensus 377 ~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~L~~L~Ls~N~l~~l-~~~--------~~--------~~L~~L~L 438 (549)
T 2z81_A 377 QKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIRVV-KTC--------IP--------QTLEVLDV 438 (549)
T ss_dssp HHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCCCTTCCEEECTTSCCSCC-CTT--------SC--------TTCSEEEC
T ss_pred ccchhhhhcCCCCCEEECCCCCCcc-CChhhcccccccEEECCCCCcccc-cch--------hc--------CCceEEEC
Confidence 63 378899999999999884 443 378999999999998742 111 11 68999999
Q ss_pred cCCCCCCCcccCCCcccEEECCCCcccccCCC--CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCC
Q 037786 458 SHNFITKMKQISWKNLGYLDLRSNLLQGPLLV--PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIP 533 (565)
Q Consensus 458 ~~n~l~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p 533 (565)
++|++++.+ ..+++|++|++++|+++. +|. .+++|++|++++|++++..+..++.+++|++|++++|++.|..|
T Consensus 439 s~N~l~~~~-~~l~~L~~L~Ls~N~l~~-ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 439 SNNNLDSFS-LFLPRLQELYISRNKLKT-LPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CSSCCSCCC-CCCTTCCEEECCSSCCSS-CCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CCCChhhhc-ccCChhcEEECCCCccCc-CCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 999999885 468899999999999984 554 78999999999999998888889999999999999999987744
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-43 Score=366.31 Aligned_cols=450 Identities=19% Similarity=0.179 Sum_probs=371.0
Q ss_pred CCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEc
Q 037786 83 SPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDL 162 (565)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 162 (565)
++|++|++++|.+++..|..|.++++|++|++++|.+++..+.+|.++++|++|++++|.+.+..+..++.+++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 67888888888888777889999999999999999999888899999999999999999999777777999999999999
Q ss_pred cCcccccc--CcCCcCCCCCCEEeccCCc-ccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCccc
Q 037786 163 GSNSFDGQ--FPDIMNLTRISRLDISNNQ-LTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLT 239 (565)
Q Consensus 163 ~~~~~~~~--~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~ 239 (565)
++|.+... ...++.+++|+.|++++|. +....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 99999753 3458999999999999998 45444568999999999999999998888889999999999999999876
Q ss_pred ccCCCC--CCCCCcEEEccCCccccCC--c-hhhhcCCCcCccccccccccCccCh---HhhhcCCCCCEEEccCCcccc
Q 037786 240 GHLDAF--PSKSLRKLYLTNNRLHGSI--P-SSIFELANLTYLSLASNNFSGIVEP---YMLAKLVNLAALELSHNSLSF 311 (565)
Q Consensus 240 ~~~~~~--~~~~L~~L~l~~~~~~~~~--~-~~~~~~~~L~~L~l~~n~~~~~~~~---~~l~~~~~L~~L~l~~~~i~~ 311 (565)
...... ..++|++|++++|.+++.. + .....+++|+.+++++|.+.+.... ..+..+++|+.+++++|.+.+
T Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~ 265 (549)
T 2z81_A 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265 (549)
T ss_dssp THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEEC
T ss_pred ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccc
Confidence 443322 4689999999999988532 1 1233578999999999988754322 234667899999999998765
Q ss_pred ccCC-----cccCCCCCccEEEcCCCCCCCCC------chhh-ccccceEeccCCcCcccCChhhhhhCCCCccEEEcCC
Q 037786 312 GTTS-----KVNSSFPQIFILSLSACNISAFP------SFLR-SLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSH 379 (565)
Q Consensus 312 ~~~~-----~~~~~~~~L~~L~l~~~~l~~l~------~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~ 379 (565)
.... .....+++++.+++.++.+.... .... ..+++.+++++|.+. .+|..++. .+++|+.|++++
T Consensus 266 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~-~l~~L~~L~Ls~ 343 (549)
T 2z81_A 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQ-HLKSLEFLDLSE 343 (549)
T ss_dssp CSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHH-HCTTCCEEECCS
T ss_pred cccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHh-cCccccEEEccC
Confidence 3211 12356788999999998876432 1112 238999999999998 78887754 579999999999
Q ss_pred CccCCcc------CCCCCCCCeEEcCCCcccccC-----CCCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccC
Q 037786 380 NFITEMK------QIPWKNLKYLKLQSNLLQGPL-----PVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIG 448 (565)
Q Consensus 380 n~l~~~~------~~~~~~L~~L~l~~n~~~~~~-----~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~ 448 (565)
|.++... ...+++|++|++++|++.+.. ...+++|++|++++|+++ ..|..+..+
T Consensus 344 N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~------------- 409 (549)
T 2z81_A 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP------------- 409 (549)
T ss_dssp SCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCC-------------
T ss_pred CccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccc-------------
Confidence 9998753 236799999999999997542 345899999999999998 455555555
Q ss_pred CCCCcEEeCcCCCCCCCcccCCCcccEEECCCCcccccCCCCCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcC
Q 037786 449 KDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRL 528 (565)
Q Consensus 449 ~~~L~~L~l~~n~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~ 528 (565)
++|++|++++|.+..+|....++|+.|++++|++++ .+..+++|++|++++|+++ .+|. ...+++|++|++++|++
T Consensus 410 -~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~-~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l 485 (549)
T 2z81_A 410 -EKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDS-FSLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQL 485 (549)
T ss_dssp -TTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSC-CCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCC
T ss_pred -ccccEEECCCCCcccccchhcCCceEEECCCCChhh-hcccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCcc
Confidence 899999999999998876556799999999999987 3468899999999999998 4555 47899999999999999
Q ss_pred cccCCCCCCCCCCCcccccCCCCc
Q 037786 529 SGTIPKCIGNFSPWCQTKWPSRWS 552 (565)
Q Consensus 529 ~~~~p~~l~~l~~L~~l~~~~~~~ 552 (565)
.+..|+.++.+++|+.|++.+...
T Consensus 486 ~~~~~~~~~~l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 486 KSVPDGIFDRLTSLQKIWLHTNPW 509 (549)
T ss_dssp CCCCTTGGGGCTTCCEEECCSSCB
T ss_pred CCcCHHHHhcCcccCEEEecCCCc
Confidence 987777899999999999987544
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-42 Score=360.39 Aligned_cols=490 Identities=18% Similarity=0.160 Sum_probs=358.1
Q ss_pred ccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCC-CCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEcc
Q 037786 37 LTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFP-RSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLS 115 (565)
Q Consensus 37 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~ 115 (565)
.+.++.++..++ .+|..+. +++++|++++| .+....+ .+..+++|++|++++|.+++..+..|.++++|++|+++
T Consensus 9 ~~~~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 84 (570)
T 2z63_A 9 NITYQCMELNFY-KIPDNLP--FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84 (570)
T ss_dssp TTEEECCSSCCS-SCCSSSC--SSCCEEECCSC-CCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CcEEEeCCCCcc-ccCCCcc--ccccEEEccCC-ccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCc
Confidence 345666666565 4554443 46888888887 4444433 34445788888888887776666777788888888888
Q ss_pred cccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccc--cCcCCcCCCCCCEEeccCCccccc
Q 037786 116 QCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDG--QFPDIMNLTRISRLDISNNQLTGS 193 (565)
Q Consensus 116 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~ 193 (565)
+|.++...+.+|.++++|++|++++|.+....+..++.+++|++|++++|.+.. .+..++++++|++|++++|.+.+.
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred CCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence 887777777777888888888888887775554467778888888888887764 233477778888888888877766
Q ss_pred CCCCCcCCCCC----CEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCC---CCCCCCcEEEccCCcc------
Q 037786 194 IPSHGSGLQNL----AVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDA---FPSKSLRKLYLTNNRL------ 260 (565)
Q Consensus 194 ~~~~~~~~~~L----~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~------ 260 (565)
.+..+..+++| +.+++++|.+....+..+... +|+.+++++|........ .....++...+....+
T Consensus 165 ~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l 243 (570)
T 2z63_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243 (570)
T ss_dssp CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSC
T ss_pred cHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhh
Confidence 66666666666 777888877776555555554 677777777643211000 0223333332221111
Q ss_pred ccCCchhhhcCC--CcCccccccc-cccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCC
Q 037786 261 HGSIPSSIFELA--NLTYLSLASN-NFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAF 337 (565)
Q Consensus 261 ~~~~~~~~~~~~--~L~~L~l~~n-~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l 337 (565)
.......+..++ .++.++++++ .+.+. .+..+..+++|++|++++|.+.. .+ .....+ +|+.|++++|.+..+
T Consensus 244 ~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~-l~-~~~~~~-~L~~L~l~~n~~~~l 319 (570)
T 2z63_A 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDD-IIDLFNCLTNVSSFSLVSVTIER-VK-DFSYNF-GWQHLELVNCKFGQF 319 (570)
T ss_dssp EECCTTTTGGGGGSEEEEEEEEETTEEESC-STTTTGGGTTCSEEEEESCEECS-CC-BCCSCC-CCSEEEEESCBCSSC
T ss_pred hhcchhhhccccccchhhhhhhcchhhhhh-chhhhcCcCcccEEEecCccchh-hh-hhhccC-CccEEeeccCccccc
Confidence 111112222222 3556667666 44433 34568889999999999999874 22 333555 999999999999988
Q ss_pred CchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccC-----CCCCCCCeEEcCCCcccccCC--CC
Q 037786 338 PSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQ-----IPWKNLKYLKLQSNLLQGPLP--VP 410 (565)
Q Consensus 338 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-----~~~~~L~~L~l~~n~~~~~~~--~~ 410 (565)
|.. ...+|+.|++++|.+....+. ..+++|+.|++++|.++.... ..+++|++|++++|.+.+..+ ..
T Consensus 320 ~~~-~l~~L~~L~l~~n~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 394 (570)
T 2z63_A 320 PTL-KLKSLKRLTFTSNKGGNAFSE----VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG 394 (570)
T ss_dssp CBC-BCSSCCEEEEESCBSCCBCCC----CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEET
T ss_pred Ccc-cccccCEEeCcCCcccccccc----ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccc
Confidence 862 344999999999998866655 267999999999999988752 378999999999999876443 34
Q ss_pred CCCCcEEEccccccCccch-hhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cc--cCCCcccEEECCCCccc-c
Q 037786 411 PPRLQFLLASNNQFTGEII-QSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQ--ISWKNLGYLDLRSNLLQ-G 485 (565)
Q Consensus 411 ~~~L~~L~l~~n~i~~~~~-~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~ls~n~l~-~ 485 (565)
+++|++|++++|.+++..+ ..+..+ ++|++|++++|.+... |. ..+++|+.|++++|.+. +
T Consensus 395 l~~L~~L~l~~n~l~~~~~~~~~~~l--------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 460 (570)
T 2z63_A 395 LEQLEHLDFQHSNLKQMSEFSVFLSL--------------RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460 (570)
T ss_dssp CTTCCEEECTTSEEESCTTSCTTTTC--------------TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred cCCCCEEEccCCccccccchhhhhcC--------------CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccc
Confidence 8999999999999987655 456666 9999999999999988 54 77899999999999997 3
Q ss_pred cCCC---CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCCCCCCCCCcccccCCCCccc
Q 037786 486 PLLV---PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSPWCQTKWPSRWSAT 554 (565)
Q Consensus 486 ~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~l~~~~~~~~~ 554 (565)
.+|. .+++|++|++++|.+++..|..|+.+++|++|++++|++.+..|+.++.+++|+.|++.+.....
T Consensus 461 ~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 4444 88999999999999999889999999999999999999997777789999999999999865543
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-41 Score=351.42 Aligned_cols=439 Identities=18% Similarity=0.175 Sum_probs=232.7
Q ss_pred CEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCC
Q 037786 62 QMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFK 141 (565)
Q Consensus 62 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~ 141 (565)
++|++++| .+.. ++.... ++|++|++++|.+++..|..|.++++|++|++++|.+++..|.+|.++++|++|++++|
T Consensus 3 ~~l~ls~n-~l~~-ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKN-GLIH-VPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTS-CCSS-CCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCC-Cccc-cccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 46677776 4443 332222 67777777777777655667777777777777777777666777777777777777777
Q ss_pred cccccCCcCccCCCCCCEEEccCcccccc-C-cCCcCCCCCCEEeccCCcccccCCCCCcCCCCC--CEEEcccccc--c
Q 037786 142 SFSGHIPPSLSNLHQLTDVDLGSNSFDGQ-F-PDIMNLTRISRLDISNNQLTGSIPSHGSGLQNL--AVLRLYNNTL--S 215 (565)
Q Consensus 142 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~l--~ 215 (565)
.++ .+|.. .+++|++|++++|.+... . ..++.+++|++|++++|.+.+ ..+..+++| +.|++++|.+ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 776 34444 667777777777777642 2 346777777777777776654 234555566 7777777766 4
Q ss_pred CCCchhhcCCC-CCCEEEccCCcccccCCCC---CCCCCcEEEccCCc-------cccCCchhhhcCCCcCccccccccc
Q 037786 216 GTIPSWLFTLP-LLRDIDLSDNQLTGHLDAF---PSKSLRKLYLTNNR-------LHGSIPSSIFELANLTYLSLASNNF 284 (565)
Q Consensus 216 ~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~-------~~~~~~~~~~~~~~L~~L~l~~n~~ 284 (565)
...+..+..+. +...+++++|.+.+..... ..++|+.+++++|. +.+.++ .+..+++|+.+++++|.+
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence 44444444433 2224455555554332221 34555555555554 222222 344555566666655555
Q ss_pred cCccChHhh--hcCCCCCEEEccCCccccccCCccc----CCCCCccEEEcCCCCCCCCCchhhccccceEeccCCcCcc
Q 037786 285 SGIVEPYML--AKLVNLAALELSHNSLSFGTTSKVN----SSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDG 358 (565)
Q Consensus 285 ~~~~~~~~l--~~~~~L~~L~l~~~~i~~~~~~~~~----~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~ 358 (565)
.+....... ...++|++|++++|.+++..+..++ ..++.|+.+++++|.+ .+|.
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~------------------- 292 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQ------------------- 292 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCT-------------------
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecch-------------------
Confidence 432111111 1124555666665555543333321 3444455555555544 3331
Q ss_pred cCChhhhhh-CCCCccEEEcCCCccCCccC-CCCCCCCeEEcCCCcccccCCCC---CCCCcEEEccccccCc--cchhh
Q 037786 359 QIPNWMWEV-GKDTLSFLDLSHNFITEMKQ-IPWKNLKYLKLQSNLLQGPLPVP---PPRLQFLLASNNQFTG--EIIQS 431 (565)
Q Consensus 359 ~~~~~~~~~-~~~~L~~L~ls~n~l~~~~~-~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~i~~--~~~~~ 431 (565)
.++... ...+++.|++++|.+..... ..+++|++|++++|++.+..|.. +++|++|++++|++++ ..+..
T Consensus 293 ---~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~ 369 (520)
T 2z7x_B 293 ---SYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEM 369 (520)
T ss_dssp ---HHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHH
T ss_pred ---hhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHH
Confidence 111110 11334555555554444442 34455555555555555433322 4555555555555554 23344
Q ss_pred hhhcCCCCCCccccccCCCCCcEEeCcCCCCCC-Ccc---cCCCcccEEECCCCcccccCCCCC-CCCcEeeccCceeee
Q 037786 432 ICSSSTLEIPSWISEIGKDSLSYLNLSHNFITK-MKQ---ISWKNLGYLDLRSNLLQGPLLVPP-SSLRVILILNNQFTG 506 (565)
Q Consensus 432 l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~---~~~~~L~~L~ls~n~l~~~~~~~~-~~L~~L~l~~n~~~~ 506 (565)
+..+ ++|++|++++|.+.+ +|. ..+++|+.|++++|.+++..+..+ ++|++|++++|.++
T Consensus 370 ~~~l--------------~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~- 434 (520)
T 2z7x_B 370 TTQM--------------KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK- 434 (520)
T ss_dssp HTTC--------------TTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-
T ss_pred HhhC--------------CCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-
Confidence 4444 555555555555555 332 334555555555555554444322 45555555555555
Q ss_pred ccchhhhcCCCCCEEeCCCCcCcccCCCC-CCCCCCCcccccCC
Q 037786 507 EIIHSICDIIALDVLDLSNNRLSGTIPKC-IGNFSPWCQTKWPS 549 (565)
Q Consensus 507 ~~~~~l~~~~~L~~L~l~~n~~~~~~p~~-l~~l~~L~~l~~~~ 549 (565)
.+|..+..+++|++|++++|++. .+|+. +..+++|+.|++.+
T Consensus 435 ~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 435 SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHT 477 (520)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcC
Confidence 34444445555555555555555 44444 55555555555544
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-41 Score=357.73 Aligned_cols=499 Identities=20% Similarity=0.216 Sum_probs=348.3
Q ss_pred cEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCC-CCCCCCCcEEEcc
Q 037786 13 QLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPR-SNWTSPLRCLDVS 91 (565)
Q Consensus 13 ~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~-~~~~~~L~~L~l~ 91 (565)
++.+.++.+++.++. ++|+++++|+|++|+|+...+.+|.++++|++|+|++| .+....+. +..+++|++|+++
T Consensus 34 ~~~~c~~~~l~~vP~----~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls 108 (635)
T 4g8a_A 34 ITYQCMELNFYKIPD----NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILT 108 (635)
T ss_dssp TEEECTTSCCSSCCS----SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECT
T ss_pred CEEECCCCCcCccCC----CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEcc
Confidence 356666666765542 46788999999999999777788999999999999998 56655554 4556999999999
Q ss_pred CCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccc-cCCcCccCCCCCCEEEccCcccccc
Q 037786 92 GTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSG-HIPPSLSNLHQLTDVDLGSNSFDGQ 170 (565)
Q Consensus 92 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~ 170 (565)
+|.++...+..|.++++|++|++++|.++...+.+|+++++|++|++++|.+.. ..|..+..+++|++|++++|.+.+.
T Consensus 109 ~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 109 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp TCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 999987667788999999999999999988777789999999999999998874 3567788899999999999988766
Q ss_pred CcC-CcCCCC----CCEEeccCCcccccCCCCCcCCCCCCEEEcccccccC-CCchhhcCCCCCCEEEccCCcccc----
Q 037786 171 FPD-IMNLTR----ISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSG-TIPSWLFTLPLLRDIDLSDNQLTG---- 240 (565)
Q Consensus 171 ~~~-~~~~~~----L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~l~~~~~L~~L~l~~~~~~~---- 240 (565)
.+. +..+.+ ...++++.+.+....+..+. ...+..+++.++.... ..+..+..+..++...+..+....
T Consensus 189 ~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l 267 (635)
T 4g8a_A 189 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 267 (635)
T ss_dssp CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred ccccccchhhhhhhhhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCccccccccccccccccccc
Confidence 554 443333 34678888888755444433 3456677777764331 122344455555544432221110
Q ss_pred ------------------------------cCC-CCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccC
Q 037786 241 ------------------------------HLD-AFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVE 289 (565)
Q Consensus 241 ------------------------------~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 289 (565)
... ......++.+.+.++.+... ..+....+++.+++.+|.+....
T Consensus 268 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~- 344 (635)
T 4g8a_A 268 EKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFP- 344 (635)
T ss_dssp SCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCC-
T ss_pred ccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcC-
Confidence 000 01223455555555544422 12334456666666666655331
Q ss_pred hHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCC---Cchhh-ccccceEeccCCcCcccCChhhh
Q 037786 290 PYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAF---PSFLR-SLELAYLDLSENNIDGQIPNWMW 365 (565)
Q Consensus 290 ~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l---~~~~~-~~~L~~L~l~~n~l~~~~~~~~~ 365 (565)
...++.|+.+++.++....... ...+++++.+++++|.+... +.... ..+++.+++..+.... .+..+.
T Consensus 345 ---~~~l~~L~~l~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~ 417 (635)
T 4g8a_A 345 ---TLKLKSLKRLTFTSNKGGNAFS---EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFL 417 (635)
T ss_dssp ---CCBCTTCCEEEEESCCSCCBCC---CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCT
T ss_pred ---cccchhhhhcccccccCCCCcc---cccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-cccccc
Confidence 1345566666666665443221 13567788888888877522 22222 2278888888877663 333332
Q ss_pred hhCCCCccEEEcCCCccCCccC----CCCCCCCeEEcCCCcccccCCCC---CCCCcEEEccccccC-ccchhhhhhcCC
Q 037786 366 EVGKDTLSFLDLSHNFITEMKQ----IPWKNLKYLKLQSNLLQGPLPVP---PPRLQFLLASNNQFT-GEIIQSICSSST 437 (565)
Q Consensus 366 ~~~~~~L~~L~ls~n~l~~~~~----~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~i~-~~~~~~l~~~~~ 437 (565)
.++.|+.++++++....... ..+++++.+++++|.+....+.. ++.+++|++++|.+. +..+..+..+
T Consensus 418 --~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l-- 493 (635)
T 4g8a_A 418 --GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL-- 493 (635)
T ss_dssp --TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC--
T ss_pred --ccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhc--
Confidence 56788888888887666554 25678888999998887655543 788899999988754 3455566666
Q ss_pred CCCCccccccCCCCCcEEeCcCCCCCCC-cc--cCCCcccEEECCCCcccccCCC---CCCCCcEeeccCceeeeccchh
Q 037786 438 LEIPSWISEIGKDSLSYLNLSHNFITKM-KQ--ISWKNLGYLDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEIIHS 511 (565)
Q Consensus 438 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~ 511 (565)
++|++|+|++|+++++ |. ..+++|++|++++|++++..+. .+++|++||+++|++++..+..
T Consensus 494 ------------~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 561 (635)
T 4g8a_A 494 ------------RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 561 (635)
T ss_dssp ------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSC
T ss_pred ------------cccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHH
Confidence 8999999999999988 44 6788999999999998874443 7789999999999999888888
Q ss_pred hhcC-CCCCEEeCCCCcCcccCCCCCCCCCCCcccccCCCCccc
Q 037786 512 ICDI-IALDVLDLSNNRLSGTIPKCIGNFSPWCQTKWPSRWSAT 554 (565)
Q Consensus 512 l~~~-~~L~~L~l~~n~~~~~~p~~l~~l~~L~~l~~~~~~~~~ 554 (565)
|+.+ ++|+.|+|++|++.|. |.+.|...|++.
T Consensus 562 l~~l~~~L~~L~L~~Np~~C~-----------C~~~~~~~wl~~ 594 (635)
T 4g8a_A 562 LQHFPSSLAFLNLTQNDFACT-----------CEHQSFLQWIKD 594 (635)
T ss_dssp TTCCCTTCCEEECTTCCBCCS-----------GGGHHHHHHHHH
T ss_pred HHhhhCcCCEEEeeCCCCccc-----------CCcHHHHHHHHh
Confidence 8887 6899999999999988 888888888754
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-41 Score=349.25 Aligned_cols=457 Identities=18% Similarity=0.149 Sum_probs=319.3
Q ss_pred cEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCC-CCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEccc
Q 037786 38 TSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFP-RSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQ 116 (565)
Q Consensus 38 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~ 116 (565)
++++++++.++ .+|..+. ++|++|++++| .+.+..+ .+..+++|++|++++|.+++..|..|.++++|++|++++
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQN-YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSS-CCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCC-cccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 68999999999 5776665 89999999999 5555543 455669999999999999988889999999999999999
Q ss_pred ccCcccCchhccCCCCCCeeeccCCcccc-cCCcCccCCCCCCEEEccCccccccCcCCcCCCCC--CEEeccCCcc--c
Q 037786 117 CNFYGFLPASLGNVTQLAVLSLSFKSFSG-HIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRI--SRLDISNNQL--T 191 (565)
Q Consensus 117 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~ 191 (565)
|.++.. |.. .+++|++|++++|.+.+ .+|..++.+++|++|++++|.+.. ..+..+++| +.|++++|.+ .
T Consensus 79 N~l~~l-p~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 79 NKLVKI-SCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp SCCCEE-ECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred Cceeec-Ccc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccc
Confidence 999854 443 89999999999999986 467899999999999999999875 346777888 9999999998 6
Q ss_pred ccCCCCCcCCC-CCCEEEcccccccCCC-chhhcCCCCCCEEEccCCc-------ccccCCC-CCCCCCcEEEccCCccc
Q 037786 192 GSIPSHGSGLQ-NLAVLRLYNNTLSGTI-PSWLFTLPLLRDIDLSDNQ-------LTGHLDA-FPSKSLRKLYLTNNRLH 261 (565)
Q Consensus 192 ~~~~~~~~~~~-~L~~L~l~~~~l~~~~-~~~l~~~~~L~~L~l~~~~-------~~~~~~~-~~~~~L~~L~l~~~~~~ 261 (565)
+..+..+..+. +...+++++|.+.+.. ...+..+++|+.+++++|. +.+..+. ...++|+.|++.++.+.
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~ 233 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccC
Confidence 66777666654 2345677777765443 3466789999999999986 3332222 26688999999999887
Q ss_pred cCCchhhh---cCCCcCccccccccccCccChHhh----hcCCCCCEEEccCCccccccCCcccCC---CCCccEEEcCC
Q 037786 262 GSIPSSIF---ELANLTYLSLASNNFSGIVEPYML----AKLVNLAALELSHNSLSFGTTSKVNSS---FPQIFILSLSA 331 (565)
Q Consensus 262 ~~~~~~~~---~~~~L~~L~l~~n~~~~~~~~~~l----~~~~~L~~L~l~~~~i~~~~~~~~~~~---~~~L~~L~l~~ 331 (565)
+.....+. ..++|+.|++++|.+.+.++...+ ..+++|+.+++++|.+ ..+...... ..+++.|++++
T Consensus 234 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~ 311 (520)
T 2z7x_B 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSG 311 (520)
T ss_dssp HHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEES
T ss_pred HHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCC
Confidence 54322222 246999999999999866554322 7889999999999987 222111111 14688888888
Q ss_pred CCCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccC-----CCCCCCCeEEcCCCccccc
Q 037786 332 CNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQ-----IPWKNLKYLKLQSNLLQGP 406 (565)
Q Consensus 332 ~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-----~~~~~L~~L~l~~n~~~~~ 406 (565)
|.+..++......+|++|++++|.+++..|..+. .+++|+.|++++|+++.++. ..+++|++|++++|++.+
T Consensus 312 n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~- 388 (520)
T 2z7x_B 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCG--HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY- 388 (520)
T ss_dssp SCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCC--CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBC-
T ss_pred CccccccchhhCCcccEEEeECCccChhhhhhhc--cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCc-
Confidence 8877554322333777777777777765665543 45667777777666665332 244555555555555544
Q ss_pred CCCCCCCCcEEEccccccCccchhh-hhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cccCCCcccEEECCCCccc
Q 037786 407 LPVPPPRLQFLLASNNQFTGEIIQS-ICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQISWKNLGYLDLRSNLLQ 484 (565)
Q Consensus 407 ~~~~~~~L~~L~l~~n~i~~~~~~~-l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~L~~L~ls~n~l~ 484 (565)
..+.. +..+ ++|++|++++|++++. |....++|+.|++++|+++
T Consensus 389 --------------------~l~~~~~~~l--------------~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~ 434 (520)
T 2z7x_B 389 --------------------DEKKGDCSWT--------------KSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK 434 (520)
T ss_dssp --------------------CGGGCSCCCC--------------TTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC
T ss_pred --------------------ccccchhccC--------------ccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc
Confidence 22221 2222 4555555555555444 3222245555555555555
Q ss_pred ccCCC---CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCCCCCCCCCcccccC-CCCccc
Q 037786 485 GPLLV---PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSPWCQTKWP-SRWSAT 554 (565)
Q Consensus 485 ~~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~l~~~-~~~~~~ 554 (565)
. +|. .+++|++|++++|.+++..+..+..+++|++|++++|++.|. |.+.|. ..|++.
T Consensus 435 ~-ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~-----------c~~~~~~~~~~~~ 496 (520)
T 2z7x_B 435 S-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS-----------CPRIDYLSRWLNK 496 (520)
T ss_dssp C-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC-----------HHHHHHHHHHHHH
T ss_pred c-cchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCccc-----------CCchHHHHHHHHh
Confidence 2 322 566777777777777643333478888888888888888876 666666 666643
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-39 Score=342.09 Aligned_cols=483 Identities=20% Similarity=0.161 Sum_probs=369.0
Q ss_pred EEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCC-CCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEcccc
Q 037786 39 SLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFP-RSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQC 117 (565)
Q Consensus 39 ~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~ 117 (565)
+.+-++-.++ .+|..+. +++++|+|++| .+....+ .+..+++|++|++++|.++...+.+|.++++|++|+|++|
T Consensus 35 ~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N-~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 35 TYQCMELNFY-KIPDNLP--FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCCcC-ccCCCCC--cCCCEEEeeCC-CCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC
Confidence 4555555566 4565443 47999999999 6666554 4556699999999999999777888999999999999999
Q ss_pred cCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccC--cCCcCCCCCCEEeccCCcccccCC
Q 037786 118 NFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQF--PDIMNLTRISRLDISNNQLTGSIP 195 (565)
Q Consensus 118 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~ 195 (565)
.++...+.+|.++++|++|++++|.+++..+..|+++++|++|++++|.+.... ..+..+++|++|++++|++.+..+
T Consensus 111 ~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 111 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence 999888889999999999999999999777778999999999999999987542 347889999999999999998777
Q ss_pred CCCcCCCC----CCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCC---CCCCCCcEEEcc------------
Q 037786 196 SHGSGLQN----LAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDA---FPSKSLRKLYLT------------ 256 (565)
Q Consensus 196 ~~~~~~~~----L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l~------------ 256 (565)
..+..+.+ ...++++.|.+....+..+ ....+..+++.++........ .....++...+.
T Consensus 191 ~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~ 269 (635)
T 4g8a_A 191 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 269 (635)
T ss_dssp GGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred ccccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccc
Confidence 76655444 3478889988875444433 334567788877754311100 011222222211
Q ss_pred ------------------CCccc---cCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCC
Q 037786 257 ------------------NNRLH---GSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTS 315 (565)
Q Consensus 257 ------------------~~~~~---~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~ 315 (565)
.+... ......+....+++.+.+.++.+... ..+.....++.|++.++.+.....
T Consensus 270 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~~~- 345 (635)
T 4g8a_A 270 FDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV---KDFSYNFGWQHLELVNCKFGQFPT- 345 (635)
T ss_dssp CCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC---GGGGSCCCCSEEEEESCEESSCCC-
T ss_pred ccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc---cccccchhhhhhhcccccccCcCc-
Confidence 10000 01122334456677777777776543 235667788999999887764332
Q ss_pred cccCCCCCccEEEcCCCCCCCCCchhhccccceEeccCCcCccc--CChhhhhhCCCCccEEEcCCCccCCccCC--CCC
Q 037786 316 KVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQ--IPNWMWEVGKDTLSFLDLSHNFITEMKQI--PWK 391 (565)
Q Consensus 316 ~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~ 391 (565)
..+..++.+++.++.....+......+|+.+++++|.+... .+.... ...+++.++++.+........ .++
T Consensus 346 ---~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~--~~~~L~~L~~~~~~~~~~~~~~~~l~ 420 (635)
T 4g8a_A 346 ---LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF--GTISLKYLDLSFNGVITMSSNFLGLE 420 (635)
T ss_dssp ---CBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHH--SCSCCCEEECCSCSEEEECSCCTTCT
T ss_pred ---ccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchh--hhhhhhhhhccccccccccccccccc
Confidence 34577888899888877666555556899999999988643 333333 678999999999988776663 678
Q ss_pred CCCeEEcCCCcccccCCC----CCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCC-C-
Q 037786 392 NLKYLKLQSNLLQGPLPV----PPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITK-M- 465 (565)
Q Consensus 392 ~L~~L~l~~n~~~~~~~~----~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~- 465 (565)
+|+.+++.++......+. .+++++.+++++|.+.+..+..+... +.|++|++++|.+.. .
T Consensus 421 ~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~--------------~~L~~L~Ls~N~~~~~~~ 486 (635)
T 4g8a_A 421 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL--------------SSLEVLKMAGNSFQENFL 486 (635)
T ss_dssp TCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTC--------------TTCCEEECTTCEEGGGEE
T ss_pred cccchhhhhccccccccccccccccccccccccccccccccccccccc--------------hhhhhhhhhhcccccccC
Confidence 999999999877654433 38899999999999998877777777 999999999998654 3
Q ss_pred cc--cCCCcccEEECCCCcccccCCC---CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCCCCCC-
Q 037786 466 KQ--ISWKNLGYLDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNF- 539 (565)
Q Consensus 466 ~~--~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l~~l- 539 (565)
|. ..+++|+.|++++|++++..+. .+++|++|++++|++++..+..|+.+++|++|+|++|++....|+.+..+
T Consensus 487 ~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 566 (635)
T 4g8a_A 487 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 566 (635)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCC
T ss_pred chhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhh
Confidence 44 7789999999999999886554 78999999999999999889999999999999999999998888899988
Q ss_pred CCCcccccCC
Q 037786 540 SPWCQTKWPS 549 (565)
Q Consensus 540 ~~L~~l~~~~ 549 (565)
++|+.|++.+
T Consensus 567 ~~L~~L~L~~ 576 (635)
T 4g8a_A 567 SSLAFLNLTQ 576 (635)
T ss_dssp TTCCEEECTT
T ss_pred CcCCEEEeeC
Confidence 7899999877
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-41 Score=358.79 Aligned_cols=428 Identities=19% Similarity=0.227 Sum_probs=239.5
Q ss_pred CCccEEEccCCcccccCCccccCCCCCCEEec-CCCCCCCccCCCCCCCC--CC-----cEEEcc----------CCccC
Q 037786 35 SSLTSLSLSYCRIQGEFPENIFRLSNLQMVRL-KFNSNLSGVFPRSNWTS--PL-----RCLDVS----------GTRFS 96 (565)
Q Consensus 35 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L-~~~~~~~~~~~~~~~~~--~L-----~~L~l~----------~~~~~ 96 (565)
.+++.|+|+++.+.+.+|.+++++++|++|+| ++| .+.+..+...... .+ +.+... ...+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N-~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHS-ETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTT-HHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccc-cccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 57888889888888888888888999999998 555 3322211000000 00 000000 00000
Q ss_pred cc-----------CCccccCCCCCCEEEccc--ccCcccCchhccCCCCCCeeeccCCcccc-----------------c
Q 037786 97 GQ-----------LPDSICNLRHLRELHLSQ--CNFYGFLPASLGNVTQLAVLSLSFKSFSG-----------------H 146 (565)
Q Consensus 97 ~~-----------~~~~~~~l~~L~~L~L~~--~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----------------~ 146 (565)
.. .+........++.+.+.. |.+++ .|..|.++++|+.|++++|.+++ .
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 00 000001111222222221 33433 34445555555555555555443 2
Q ss_pred CCcCcc--CCCCCCEEEccCccccccCcC-CcCCCCCCEEeccCCc-ccc-cCCCC-------CcCCCCCCEEEcccccc
Q 037786 147 IPPSLS--NLHQLTDVDLGSNSFDGQFPD-IMNLTRISRLDISNNQ-LTG-SIPSH-------GSGLQNLAVLRLYNNTL 214 (565)
Q Consensus 147 ~~~~~~--~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~-~~~-~~~~~-------~~~~~~L~~L~l~~~~l 214 (565)
+|..++ ++++|+.|++++|.+.+..+. ++.+++|+.|++++|+ +++ .+|.. +..+++|+.|++++|.+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 555544 555555555555554433333 5555556666665555 444 33322 22334666666666666
Q ss_pred cCCCch--hhcCCCCCCEEEccCCcccccCCCCCCCCCcEEEccCCccccCCchhhhcCCC-cCccccccccccCccChH
Q 037786 215 SGTIPS--WLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELAN-LTYLSLASNNFSGIVEPY 291 (565)
Q Consensus 215 ~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~n~~~~~~~~~ 291 (565)
. .+|. .+..+++|+.|++++|.+...+.....++|+.|++++|.++ .+|..+..+++ |+.|++++|.+. .++ .
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp-~ 636 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIP-N 636 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCC-S
T ss_pred C-ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCc-h
Confidence 6 4454 56666666666666666663332225566677777777666 56666666776 777777777776 333 3
Q ss_pred hhhcCC--CCCEEEccCCccccccCCc---c-cCCCCCccEEEcCCCCCCCCCchhh--ccccceEeccCCcCcccCChh
Q 037786 292 MLAKLV--NLAALELSHNSLSFGTTSK---V-NSSFPQIFILSLSACNISAFPSFLR--SLELAYLDLSENNIDGQIPNW 363 (565)
Q Consensus 292 ~l~~~~--~L~~L~l~~~~i~~~~~~~---~-~~~~~~L~~L~l~~~~l~~l~~~~~--~~~L~~L~l~~n~l~~~~~~~ 363 (565)
.+...+ +|+.|++++|.+.+..+.- . ....++|+.|++++|.++.+|.... ..+|+.|++++|.++ .+|..
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~ 715 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPEN 715 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTT
T ss_pred hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChH
Confidence 344433 3777888877776533211 1 1134578888888888888877654 238888888888888 67766
Q ss_pred hhhhC------CCCccEEEcCCCccCCccCC----CCCCCCeEEcCCCcccccCCCC---CCCCcEEEccc------ccc
Q 037786 364 MWEVG------KDTLSFLDLSHNFITEMKQI----PWKNLKYLKLQSNLLQGPLPVP---PPRLQFLLASN------NQF 424 (565)
Q Consensus 364 ~~~~~------~~~L~~L~ls~n~l~~~~~~----~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~------n~i 424 (565)
.+... +++|+.|++++|+++.++.. .+++|+.|++++|++.+ +|.. +++|+.|++++ |++
T Consensus 716 ~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l 794 (876)
T 4ecn_A 716 SLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRI 794 (876)
T ss_dssp SSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBC
T ss_pred HhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccc
Confidence 55311 12788888888888877653 45677777777777665 3322 56666666654 555
Q ss_pred CccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcccCCCcccEEECCCCccc
Q 037786 425 TGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQ 484 (565)
Q Consensus 425 ~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~ls~n~l~ 484 (565)
.+..|..+..+ ++|++|++++|.+..+|....++|+.|++++|++.
T Consensus 795 ~~~ip~~l~~L--------------~~L~~L~Ls~N~L~~Ip~~l~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 795 LRQWPTGITTC--------------PSLIQLQIGSNDIRKVDEKLTPQLYILDIADNPNI 840 (876)
T ss_dssp CCCCCTTGGGC--------------SSCCEEECCSSCCCBCCSCCCSSSCEEECCSCTTC
T ss_pred cccChHHHhcC--------------CCCCEEECCCCCCCccCHhhcCCCCEEECCCCCCC
Confidence 55555555555 66666666666664445433345555555555443
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-40 Score=349.02 Aligned_cols=415 Identities=20% Similarity=0.233 Sum_probs=314.5
Q ss_pred CCccEEEccCCcccccCCccccCCCCCCEEecCCCCCC-----Ccc---------------------------CC-----
Q 037786 35 SSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNL-----SGV---------------------------FP----- 77 (565)
Q Consensus 35 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~-----~~~---------------------------~~----- 77 (565)
.+++.|+|+++.+.+.+|.+++++++|++|++++|... .+. .+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 46778888888887777778888888888888777210 000 00
Q ss_pred -------------CC--CCCCCCcEEEcc--CCccCccCCccccCCCCCCEEEcccccCccc-----------------C
Q 037786 78 -------------RS--NWTSPLRCLDVS--GTRFSGQLPDSICNLRHLRELHLSQCNFYGF-----------------L 123 (565)
Q Consensus 78 -------------~~--~~~~~L~~L~l~--~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~-----------------~ 123 (565)
.. .....++.+.+. +|.+++ +|..|+++++|++|++++|.+++. .
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 00 000222222332 457776 788888999999999999888874 7
Q ss_pred chhcc--CCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCcc-ccc--cCcCCcCC------CCCCEEeccCCcccc
Q 037786 124 PASLG--NVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNS-FDG--QFPDIMNL------TRISRLDISNNQLTG 192 (565)
Q Consensus 124 ~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~--~~~~~~~~------~~L~~L~l~~~~~~~ 192 (565)
|..+. ++++|++|++++|.+.+.+|..+.++++|++|++++|. +.+ .+..++.+ ++|+.|++++|.+.
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~- 318 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK- 318 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-
Confidence 78887 89999999999998888888888899999999999987 765 33335554 88999999999888
Q ss_pred cCCC--CCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCC-CCCC-CcEEEccCCccccCCchhh
Q 037786 193 SIPS--HGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF-PSKS-LRKLYLTNNRLHGSIPSSI 268 (565)
Q Consensus 193 ~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~-L~~L~l~~~~~~~~~~~~~ 268 (565)
.+|. .+..+++|++|++++|.+.+..+ .+..+++|+.|++++|.+...+..+ ..++ |++|++++|.++ .+|..+
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~ 396 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIF 396 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCC
T ss_pred ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhh
Confidence 6777 78888899999999998886666 7888888999999999888544433 5566 899999999888 677666
Q ss_pred hcCC--CcCccccccccccCccChHhhh-------cCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCc
Q 037786 269 FELA--NLTYLSLASNNFSGIVEPYMLA-------KLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPS 339 (565)
Q Consensus 269 ~~~~--~L~~L~l~~n~~~~~~~~~~l~-------~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~ 339 (565)
...+ +|+.|++++|.+.+..+ ..+. .+++|++|++++|.++ ..+..++..+++|+.|++++|.++.+|.
T Consensus 397 ~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~ 474 (636)
T 4eco_A 397 DAKSVSVMSAIDFSYNEIGSVDG-KNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPK 474 (636)
T ss_dssp CTTCSSCEEEEECCSSCTTTTTT-CSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCS
T ss_pred hhcccCccCEEECcCCcCCCcch-hhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCH
Confidence 6543 88999999998876543 3344 5678999999999887 3444444668889999999999887776
Q ss_pred hhhc-c--------ccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCC--CCCCCCeEEcCCCcccccCC
Q 037786 340 FLRS-L--------ELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI--PWKNLKYLKLQSNLLQGPLP 408 (565)
Q Consensus 340 ~~~~-~--------~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~l~~n~~~~~~~ 408 (565)
.... . +|+.|++++|+++ .+|..+....+++|+.|++++|+++.++.. .+++|+.|++++|+
T Consensus 475 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~------ 547 (636)
T 4eco_A 475 NSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQR------ 547 (636)
T ss_dssp SSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCB------
T ss_pred HHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCc------
Confidence 4332 1 7999999999999 788776523578899999999998886553 67788888888876
Q ss_pred CCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcccCCCcccEEECCCCcccc
Q 037786 409 VPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQG 485 (565)
Q Consensus 409 ~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~ls~n~l~~ 485 (565)
++++|++.+..|..+..+ ++|++|++++|.+..+|....++|+.|++++|++..
T Consensus 548 ---------~ls~N~l~~~~p~~l~~l--------------~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 548 ---------DAQGNRTLREWPEGITLC--------------PSLTQLQIGSNDIRKVNEKITPNISVLDIKDNPNIS 601 (636)
T ss_dssp ---------CTTCCBCCCCCCTTGGGC--------------SSCCEEECCSSCCCBCCSCCCTTCCEEECCSCTTCE
T ss_pred ---------ccccCcccccChHHHhcC--------------CCCCEEECCCCcCCccCHhHhCcCCEEECcCCCCcc
Confidence 467888888888888888 899999999999977776555788888888887653
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-39 Score=342.48 Aligned_cols=413 Identities=17% Similarity=0.204 Sum_probs=298.2
Q ss_pred CCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCccccc---------------------------------CCccc-
Q 037786 10 TKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGE---------------------------------FPENI- 55 (565)
Q Consensus 10 ~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~---------------------------------~~~~~- 55 (565)
.+++.|+++++.+.+..+.+++.+ ++|++|++++|.+... .+..+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L-~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQL-TELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGC-TTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCcccCCcCChHHhcC-ccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 478899999999998888899998 9999999999865200 00000
Q ss_pred ------------------cCCCCCCEEecCC-CCCCCccCCCCCCCCCCcEEEccCCccCcc-----------------C
Q 037786 56 ------------------FRLSNLQMVRLKF-NSNLSGVFPRSNWTSPLRCLDVSGTRFSGQ-----------------L 99 (565)
Q Consensus 56 ------------------~~l~~L~~L~L~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-----------------~ 99 (565)
.....++.+.+.. +..+.+....+..+++|++|++++|.+++. +
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 0111222222221 113334222333447888888888887764 7
Q ss_pred Ccccc--CCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCc-ccc-cCCcCccCC------CCCCEEEccCccccc
Q 037786 100 PDSIC--NLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKS-FSG-HIPPSLSNL------HQLTDVDLGSNSFDG 169 (565)
Q Consensus 100 ~~~~~--~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~~~~ 169 (565)
|..+. ++++|++|++++|.+.+..|..|.++++|++|++++|. +++ .+|..+..+ ++|++|++++|.+..
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ 319 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT 319 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc
Confidence 77777 88888888888888777778888888888888888887 776 677766655 788888888888875
Q ss_pred cCc--CCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCC-CCEEEccCCcccccCCCCC
Q 037786 170 QFP--DIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPL-LRDIDLSDNQLTGHLDAFP 246 (565)
Q Consensus 170 ~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~ 246 (565)
++. .++.+++|+.|++++|.+.+.+| .+..+++|++|++++|.+. ..+..+..+++ |+.|++++|.+...+..+.
T Consensus 320 ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~ 397 (636)
T 4eco_A 320 FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFD 397 (636)
T ss_dssp CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCC
T ss_pred cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhh
Confidence 555 47788888888888888876777 7777888888888888877 56666777877 8888888888775444332
Q ss_pred ---CCCCcEEEccCCccccCCchhhh-------cCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCc
Q 037786 247 ---SKSLRKLYLTNNRLHGSIPSSIF-------ELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSK 316 (565)
Q Consensus 247 ---~~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~ 316 (565)
.++|++|++++|.+++..|..+. .+++|+.|++++|.+. .++...+..+++|++|++++|.++ ..+..
T Consensus 398 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~ 475 (636)
T 4eco_A 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKN 475 (636)
T ss_dssp TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSS
T ss_pred hcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHH
Confidence 23688888888888877776666 6678888888888887 455566777888899999888887 33333
Q ss_pred ccCCC-------CCccEEEcCCCCCCCCCchhh--c-cccceEeccCCcCcccCChhhhhhCCCCccEEEcC------CC
Q 037786 317 VNSSF-------PQIFILSLSACNISAFPSFLR--S-LELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLS------HN 380 (565)
Q Consensus 317 ~~~~~-------~~L~~L~l~~~~l~~l~~~~~--~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls------~n 380 (565)
.+... ++|+.|++++|.++.+|..+. . .+|+.|++++|++++ +|..+. .+++|+.|+++ +|
T Consensus 476 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~--~l~~L~~L~Ls~N~~ls~N 552 (636)
T 4eco_A 476 SLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPL--NSSTLKGFGIRNQRDAQGN 552 (636)
T ss_dssp SSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGG--GCSSCCEEECCSCBCTTCC
T ss_pred HhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhh--cCCCCCEEECCCCcccccC
Confidence 32322 288899999998888887664 3 388899999998885 777766 46889999884 45
Q ss_pred ccCCccCC---CCCCCCeEEcCCCcccccCCC-CCCCCcEEEccccccCccchhh
Q 037786 381 FITEMKQI---PWKNLKYLKLQSNLLQGPLPV-PPPRLQFLLASNNQFTGEIIQS 431 (565)
Q Consensus 381 ~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~ 431 (565)
++....+. .+++|++|++++|++. .+|. ..++|++|++++|++.......
T Consensus 553 ~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~~~L~~L~Ls~N~l~~~~~~~ 606 (636)
T 4eco_A 553 RTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKITPNISVLDIKDNPNISIDLSY 606 (636)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCCTTCCEEECCSCTTCEEECTT
T ss_pred cccccChHHHhcCCCCCEEECCCCcCC-ccCHhHhCcCCEEECcCCCCccccHHh
Confidence 55544442 5788999999999884 4444 4788999999999877544433
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-39 Score=344.69 Aligned_cols=414 Identities=16% Similarity=0.182 Sum_probs=303.8
Q ss_pred CCCcEEEcCCCcCCCCCchhhhhcCCCccEEEc-cCCcccccCCccc---------------------------------
Q 037786 10 TKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSL-SYCRIQGEFPENI--------------------------------- 55 (565)
Q Consensus 10 ~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l-~~~~i~~~~~~~~--------------------------------- 55 (565)
.+++.|+|+++.+.+..+.+++.+ ++|++|+| ++|.+.+..+...
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L-~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQL-TELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGC-TTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCchHHhcc-ccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 578999999999998888999999 99999999 8887665422110
Q ss_pred ------------------cCCCCCCEEecCC--CCCCCccCCCCCCCCCCcEEEccCCccCc-----------------c
Q 037786 56 ------------------FRLSNLQMVRLKF--NSNLSGVFPRSNWTSPLRCLDVSGTRFSG-----------------Q 98 (565)
Q Consensus 56 ------------------~~l~~L~~L~L~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----------------~ 98 (565)
.....++.+.+.. | .+.+....+..+++|++|++++|.+++ .
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N-~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN-RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSC-EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccC-cccchhHHHhcCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 1111222222222 2 333333334455899999999999886 3
Q ss_pred CCcccc--CCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCc-ccc-cCCcCccC-------CCCCCEEEccCccc
Q 037786 99 LPDSIC--NLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKS-FSG-HIPPSLSN-------LHQLTDVDLGSNSF 167 (565)
Q Consensus 99 ~~~~~~--~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~~~~-------l~~L~~L~l~~~~~ 167 (565)
+|..++ ++++|++|++++|.+.+..|..|.++++|+.|++++|. +++ .+|..+.. +++|+.|++++|.+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 788877 99999999999999888888999999999999999997 776 56665544 45999999999999
Q ss_pred cccCc--CCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCC-CCEEEccCCcccccCCC
Q 037786 168 DGQFP--DIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPL-LRDIDLSDNQLTGHLDA 244 (565)
Q Consensus 168 ~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~ 244 (565)
..++. .+..+++|+.|++++|.+. .+| .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|.+...+..
T Consensus 561 ~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~ 637 (876)
T 4ecn_A 561 EEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNI 637 (876)
T ss_dssp CBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSC
T ss_pred CccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchh
Confidence 86666 5889999999999999988 667 7888999999999999988 67777888888 99999999998855443
Q ss_pred C---CCCCCcEEEccCCccccCCchh---hh--cCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCc
Q 037786 245 F---PSKSLRKLYLTNNRLHGSIPSS---IF--ELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSK 316 (565)
Q Consensus 245 ~---~~~~L~~L~l~~~~~~~~~~~~---~~--~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~ 316 (565)
+ ..++|+.|++++|.+.+..+.. +. .+++|+.|++++|.+. .++...+..+++|+.|++++|.+.. .+..
T Consensus 638 ~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~-ip~~ 715 (876)
T 4ecn_A 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTS-IPEN 715 (876)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSC-CCTT
T ss_pred hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCc-cChH
Confidence 3 2245999999999988654422 22 3458999999999998 5566677789999999999999883 3333
Q ss_pred ccCC-------CCCccEEEcCCCCCCCCCchhh--c-cccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCc-----
Q 037786 317 VNSS-------FPQIFILSLSACNISAFPSFLR--S-LELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNF----- 381 (565)
Q Consensus 317 ~~~~-------~~~L~~L~l~~~~l~~l~~~~~--~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~----- 381 (565)
.+.. +++|+.|++++|+++.+|..+. . .+|+.|++++|++++ +|..+. .+++|+.|++++|+
T Consensus 716 ~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~--~L~~L~~L~Ls~N~~ls~N 792 (876)
T 4ecn_A 716 SLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPL--NSSQLKAFGIRHQRDAEGN 792 (876)
T ss_dssp SSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGG--GCTTCCEEECCCCBCTTCC
T ss_pred HhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhh--cCCCCCEEECCCCCCcccc
Confidence 3232 2389999999999999988775 3 399999999999995 787766 57899999998754
Q ss_pred -cCCccCC---CCCCCCeEEcCCCcccccCCC-CCCCCcEEEccccccCccchhhhhh
Q 037786 382 -ITEMKQI---PWKNLKYLKLQSNLLQGPLPV-PPPRLQFLLASNNQFTGEIIQSICS 434 (565)
Q Consensus 382 -l~~~~~~---~~~~L~~L~l~~n~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~l~~ 434 (565)
+....+. .+++|+.|++++|++ +.+|. ..++|+.|++++|++....+..++.
T Consensus 793 ~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~l~~i~~~~~~~ 849 (876)
T 4ecn_A 793 RILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNPNISIDVTSVCP 849 (876)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCTTCEEECGGGHH
T ss_pred cccccChHHHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCCCCccChHHccc
Confidence 3322221 345555555555555 23333 2445555555555554444444443
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-38 Score=328.54 Aligned_cols=445 Identities=18% Similarity=0.136 Sum_probs=243.2
Q ss_pred CCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeee
Q 037786 58 LSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLS 137 (565)
Q Consensus 58 l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 137 (565)
+...++++++++ .+.. +|... .+++++|++++|.+++..+..|.++++|++|++++|.+++..+.+|.++++|++|+
T Consensus 30 ~~~~~~l~ls~~-~L~~-ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 30 NELESMVDYSNR-NLTH-VPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp ---CCEEECTTS-CCCS-CCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCcEEEcCCC-CCcc-CCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 444578888887 5554 33222 27888888888888876667888888888888888888887788888888888888
Q ss_pred ccCCcccccCCcCccCCCCCCEEEccCccccccC--cCCcCCCCCCEEeccCCcccccCCCCCcCCCCC--CEEEccccc
Q 037786 138 LSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQF--PDIMNLTRISRLDISNNQLTGSIPSHGSGLQNL--AVLRLYNNT 213 (565)
Q Consensus 138 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~ 213 (565)
+++|.++ .+|.. .+++|++|++++|.+.... ..++.+++|++|++++|.+.+. .+..+++| ++|++++|.
T Consensus 107 Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 107 VSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp CTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESS
T ss_pred CCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccc
Confidence 8888887 44544 6888888888888887643 3478888888888888877642 34555555 888888887
Q ss_pred c--cCCCchhhcCCC-CCCEEEccCCcccccCCCC---CCCCCcEEEccCCccc----cCCchhhhcCCCcCcccccccc
Q 037786 214 L--SGTIPSWLFTLP-LLRDIDLSDNQLTGHLDAF---PSKSLRKLYLTNNRLH----GSIPSSIFELANLTYLSLASNN 283 (565)
Q Consensus 214 l--~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~n~ 283 (565)
+ ....+..+..+. ..-.+++++|.+....... ..++|+.+++++|... ......+..+++++.+++.++.
T Consensus 181 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~ 260 (562)
T 3a79_B 181 YHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE 260 (562)
T ss_dssp CCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEE
T ss_pred ccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCc
Confidence 7 555566555543 1124466666655433221 4456667777666311 0112334556666666666665
Q ss_pred ccCccChH--hhhcCCCCCEEEccCCccccccCCccc----CCCCCccEEEcCCCCCCCCCc-h----hhccccceEecc
Q 037786 284 FSGIVEPY--MLAKLVNLAALELSHNSLSFGTTSKVN----SSFPQIFILSLSACNISAFPS-F----LRSLELAYLDLS 352 (565)
Q Consensus 284 ~~~~~~~~--~l~~~~~L~~L~l~~~~i~~~~~~~~~----~~~~~L~~L~l~~~~l~~l~~-~----~~~~~L~~L~l~ 352 (565)
+.+..... .....++|++|++++|.+++..+..++ ..+..|+.+++..+.+ .+|. . ....+++.|+++
T Consensus 261 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~ 339 (562)
T 3a79_B 261 TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSIS 339 (562)
T ss_dssp ECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEE
T ss_pred CcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEcc
Confidence 54221110 011224667777777666544444331 2333344444444444 3331 1 111245555555
Q ss_pred CCcCcccCChhhhhhCCCCccEEEcCCCccCCccC---CCCCCCCeEEcCCCcccccC-----CCCCCCCcEEEcccccc
Q 037786 353 ENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQ---IPWKNLKYLKLQSNLLQGPL-----PVPPPRLQFLLASNNQF 424 (565)
Q Consensus 353 ~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~l~~n~~~~~~-----~~~~~~L~~L~l~~n~i 424 (565)
+|.+..... ...+++|+.|++++|.++...+ ..+++|++|++++|++.+.. ...+++|++|++++|++
T Consensus 340 ~n~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l 415 (562)
T 3a79_B 340 DTPFIHMVC----PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL 415 (562)
T ss_dssp SSCCCCCCC----CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCC
T ss_pred CCCcccccC----ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcC
Confidence 555442110 0133455555555555554322 13445555555555544321 12245555555555555
Q ss_pred Cccchhh-hhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cccCCCcccEEECCCCcccccCCC---CCCCCcEeec
Q 037786 425 TGEIIQS-ICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQISWKNLGYLDLRSNLLQGPLLV---PPSSLRVILI 499 (565)
Q Consensus 425 ~~~~~~~-l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l 499 (565)
++..+.. +..+ ++|++|++++|.+++. |..-.++|+.|++++|.++. +|. .+++|++|++
T Consensus 416 ~~~~~~~~~~~l--------------~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L 480 (562)
T 3a79_B 416 NSHAYDRTCAWA--------------ESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMS-IPKDVTHLQALQELNV 480 (562)
T ss_dssp BSCCSSCCCCCC--------------TTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCC-CCTTTTSSCCCSEEEC
T ss_pred CCccChhhhcCc--------------ccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcc-cChhhcCCCCCCEEEC
Confidence 4422221 2222 4555555555555443 22111355555555555442 222 4445555555
Q ss_pred cCceeeeccchhhhcCCCCCEEeCCCCcCccc
Q 037786 500 LNNQFTGEIIHSICDIIALDVLDLSNNRLSGT 531 (565)
Q Consensus 500 ~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 531 (565)
++|.+++..+..+..+++|+.|++++|++.|.
T Consensus 481 ~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 481 ASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp CSSCCCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred CCCCCCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 55555432222245555555555555555443
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-38 Score=319.46 Aligned_cols=393 Identities=22% Similarity=0.257 Sum_probs=237.1
Q ss_pred CCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCC-------------CCeeeccCCcccccCCc
Q 037786 83 SPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQ-------------LAVLSLSFKSFSGHIPP 149 (565)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~-------------L~~L~l~~~~~~~~~~~ 149 (565)
+.|+++++++|.+ +.+|.+++++++|++|++++|.+.+..|..++++++ +++|++++|.+++ +|.
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC
Confidence 5666777777776 467777777777777777777777677777776665 4888888888774 343
Q ss_pred CccCCCCCCEEEccCccccccCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCC
Q 037786 150 SLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLR 229 (565)
Q Consensus 150 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~ 229 (565)
. .++|++|++++|.+.+.+. .+++|+.|++++|.+.+. +.. .++|++|++++|.+.+ .+ .+..+++|+
T Consensus 89 ~---~~~L~~L~l~~n~l~~lp~---~~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~ 156 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTELPE---LPQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLK 156 (454)
T ss_dssp C---CTTCSEEECCSSCCSSCCC---CCTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCC
T ss_pred C---cCCCCEEEccCCcCCcccc---ccCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCC
Confidence 2 3688899999888876432 247888999988887742 221 2688999999998875 45 488888999
Q ss_pred EEEccCCcccccCCCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCcc
Q 037786 230 DIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSL 309 (565)
Q Consensus 230 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i 309 (565)
+|++++|++.+.... ..+|++|++++|.+++ ++ .+..+++|+.|++++|.+.+. +. ..++|++|++++|.+
T Consensus 157 ~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~----~~~~L~~L~l~~n~l 227 (454)
T 1jl5_A 157 IIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-PD----LPLSLESIVAGNNIL 227 (454)
T ss_dssp EEECCSSCCSCCCCC--CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CC----CCTTCCEEECCSSCC
T ss_pred EEECCCCcCcccCCC--cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-CC----CcCcccEEECcCCcC
Confidence 999999888764322 3578888888888875 45 477888888888888887753 21 225788888888877
Q ss_pred ccccCCcccCCCCCccEEEcCCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCCC
Q 037786 310 SFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIP 389 (565)
Q Consensus 310 ~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~ 389 (565)
... + . +..+++|+.|++++|+++.+|... .+|+.|++++|++++ +|.. +++|+.|++++|.++.++..
T Consensus 228 ~~l-p-~-~~~l~~L~~L~l~~N~l~~l~~~~--~~L~~L~l~~N~l~~-l~~~-----~~~L~~L~ls~N~l~~l~~~- 295 (454)
T 1jl5_A 228 EEL-P-E-LQNLPFLTTIYADNNLLKTLPDLP--PSLEALNVRDNYLTD-LPEL-----PQSLTFLDVSENIFSGLSEL- 295 (454)
T ss_dssp SSC-C-C-CTTCTTCCEEECCSSCCSSCCSCC--TTCCEEECCSSCCSC-CCCC-----CTTCCEEECCSSCCSEESCC-
T ss_pred Ccc-c-c-cCCCCCCCEEECCCCcCCcccccc--cccCEEECCCCcccc-cCcc-----cCcCCEEECcCCccCcccCc-
Confidence 632 2 3 367788888888888887776532 378888888888773 4432 36788888888887775533
Q ss_pred CCCCCeEEcCCCcccccCCCCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcccC
Q 037786 390 WKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQIS 469 (565)
Q Consensus 390 ~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 469 (565)
.++|++|++++|++.+ .+..+++|++|++++|++++ .+.. + ++|++|++++|.++.+|. .
T Consensus 296 ~~~L~~L~l~~N~l~~-i~~~~~~L~~L~Ls~N~l~~-lp~~---~--------------~~L~~L~L~~N~l~~lp~-~ 355 (454)
T 1jl5_A 296 PPNLYYLNASSNEIRS-LCDLPPSLEELNVSNNKLIE-LPAL---P--------------PRLERLIASFNHLAEVPE-L 355 (454)
T ss_dssp CTTCCEEECCSSCCSE-ECCCCTTCCEEECCSSCCSC-CCCC---C--------------TTCCEEECCSSCCSCCCC-C
T ss_pred CCcCCEEECcCCcCCc-ccCCcCcCCEEECCCCcccc-cccc---C--------------CcCCEEECCCCccccccc-h
Confidence 2678888888887775 23445678888888887774 2221 2 677888888888877765 5
Q ss_pred CCcccEEECCCCcccc--cCCCCCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcc--cCCCCCCC
Q 037786 470 WKNLGYLDLRSNLLQG--PLLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSG--TIPKCIGN 538 (565)
Q Consensus 470 ~~~L~~L~ls~n~l~~--~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~--~~p~~l~~ 538 (565)
+++|+.|++++|++++ .+|. .+..| +.|.+.+.+|. .+++|++|++++|++.+ .+|.+++.
T Consensus 356 l~~L~~L~L~~N~l~~l~~ip~---~l~~L--~~n~~~~~i~~---~~~~L~~L~ls~N~l~~~~~iP~sl~~ 420 (454)
T 1jl5_A 356 PQNLKQLHVEYNPLREFPDIPE---SVEDL--RMNSHLAEVPE---LPQNLKQLHVETNPLREFPDIPESVED 420 (454)
T ss_dssp CTTCCEEECCSSCCSSCCCCCT---TCCEE--ECCC-------------------------------------
T ss_pred hhhccEEECCCCCCCcCCCChH---HHHhh--hhccccccccc---ccCcCCEEECCCCcCCccccchhhHhh
Confidence 6778888888887776 3333 33333 23444444443 24788888888888886 66655443
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=324.68 Aligned_cols=442 Identities=17% Similarity=0.169 Sum_probs=328.1
Q ss_pred CCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEc
Q 037786 83 SPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDL 162 (565)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 162 (565)
...++++++++.++ .+|..+. ++|++|++++|.+....+.+|.++++|++|++++|.+++..|.+|.++++|++|++
T Consensus 31 ~~~~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 31 ELESMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp --CCEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 44488999999988 4666553 78999999999998888888999999999999999998888888999999999999
Q ss_pred cCccccccCcCCcCCCCCCEEeccCCccccc-CCCCCcCCCCCCEEEcccccccCCCchhhcCCCCC--CEEEccCCcc-
Q 037786 163 GSNSFDGQFPDIMNLTRISRLDISNNQLTGS-IPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLL--RDIDLSDNQL- 238 (565)
Q Consensus 163 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L--~~L~l~~~~~- 238 (565)
++|.+...+.. .+++|++|++++|.+.+. .|..+..+++|++|++++|.+... .+..++++ +.|++++|.+
T Consensus 108 s~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~ 182 (562)
T 3a79_B 108 SHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYH 182 (562)
T ss_dssp TTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCC
T ss_pred CCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccc
Confidence 99998866555 789999999999998863 356788899999999999988753 34445555 9999999988
Q ss_pred -cccCCCC-CC--CCCcEEEccCCccccCCch-hhhcCCCcCcccccccc-----ccCccChHhhhcCCCCCEEEccCCc
Q 037786 239 -TGHLDAF-PS--KSLRKLYLTNNRLHGSIPS-SIFELANLTYLSLASNN-----FSGIVEPYMLAKLVNLAALELSHNS 308 (565)
Q Consensus 239 -~~~~~~~-~~--~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~-----~~~~~~~~~l~~~~~L~~L~l~~~~ 308 (565)
.+..+.. .. ...-.+++++|.+.+..+. .+..+++|+.+++++|. +.+. ...+..++.|+.+++.++.
T Consensus 183 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~--~~~l~~l~~L~~L~L~~~~ 260 (562)
T 3a79_B 183 IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF--LSELTRGPTLLNVTLQHIE 260 (562)
T ss_dssp CCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH--HHHHHSCSSCEEEEEEEEE
T ss_pred ccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHH--HHHHhccCcceEEEecCCc
Confidence 4333222 11 0122556777776654433 34467889999998875 2211 2356778888889888877
Q ss_pred cccccCCcc--cCCCCCccEEEcCCCCCC-CCCchh-----hcc-ccceEeccCCcCcccCChh-hhh-hCCCCccEEEc
Q 037786 309 LSFGTTSKV--NSSFPQIFILSLSACNIS-AFPSFL-----RSL-ELAYLDLSENNIDGQIPNW-MWE-VGKDTLSFLDL 377 (565)
Q Consensus 309 i~~~~~~~~--~~~~~~L~~L~l~~~~l~-~l~~~~-----~~~-~L~~L~l~~n~l~~~~~~~-~~~-~~~~~L~~L~l 377 (565)
+.+...... ....++|++|++++|.++ .+|..+ ... .|+.++++.+.+ .+|.. +.. ....+++.|++
T Consensus 261 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l 338 (562)
T 3a79_B 261 TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSI 338 (562)
T ss_dssp ECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEE
T ss_pred CcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEc
Confidence 654322211 012348999999999887 666544 222 455555555555 34422 211 02367999999
Q ss_pred CCCccCCccC-CCCCCCCeEEcCCCcccccCCCC---CCCCcEEEccccccCc--cchhhhhhcCCCCCCccccccCCCC
Q 037786 378 SHNFITEMKQ-IPWKNLKYLKLQSNLLQGPLPVP---PPRLQFLLASNNQFTG--EIIQSICSSSTLEIPSWISEIGKDS 451 (565)
Q Consensus 378 s~n~l~~~~~-~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~i~~--~~~~~l~~~~~~~~~~~~~~~~~~~ 451 (565)
++|.+..... ..+++|++|++++|.+.+..|.. +++|++|++++|++++ ..+..+..+ ++
T Consensus 339 ~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l--------------~~ 404 (562)
T 3a79_B 339 SDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNM--------------SS 404 (562)
T ss_dssp ESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTC--------------TT
T ss_pred cCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCC--------------CC
Confidence 9998887776 57789999999999988766543 7889999999999886 334556666 89
Q ss_pred CcEEeCcCCCCCC-Ccc---cCCCcccEEECCCCcccccCCCCC-CCCcEeeccCceeeeccchhhhcCCCCCEEeCCCC
Q 037786 452 LSYLNLSHNFITK-MKQ---ISWKNLGYLDLRSNLLQGPLLVPP-SSLRVILILNNQFTGEIIHSICDIIALDVLDLSNN 526 (565)
Q Consensus 452 L~~L~l~~n~l~~-~~~---~~~~~L~~L~ls~n~l~~~~~~~~-~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 526 (565)
|++|++++|.+.. +|. ..+++|+.|++++|.+++..+..+ ++|++|++++|.++ .+|..+..+++|++|++++|
T Consensus 405 L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N 483 (562)
T 3a79_B 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASN 483 (562)
T ss_dssp CCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSS
T ss_pred CCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCC
Confidence 9999999999988 553 567899999999999987777644 79999999999998 56666678999999999999
Q ss_pred cCcccCCCC-CCCCCCCcccccCCCCc
Q 037786 527 RLSGTIPKC-IGNFSPWCQTKWPSRWS 552 (565)
Q Consensus 527 ~~~~~~p~~-l~~l~~L~~l~~~~~~~ 552 (565)
++. .+|+. ++.+++|+.|++.+...
T Consensus 484 ~l~-~l~~~~~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 484 QLK-SVPDGVFDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp CCC-CCCTTSTTTCTTCCCEECCSCCB
T ss_pred CCC-CCCHHHHhcCCCCCEEEecCCCc
Confidence 998 77877 88899999998877433
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=300.61 Aligned_cols=417 Identities=21% Similarity=0.260 Sum_probs=195.1
Q ss_pred CCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCC-CCC-------------CcEEEccCCccCccCC
Q 037786 35 SSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNW-TSP-------------LRCLDVSGTRFSGQLP 100 (565)
Q Consensus 35 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~-~~~-------------L~~L~l~~~~~~~~~~ 100 (565)
.+|++|.+++|.+ +.+|.+++++++|++|++++| ...+..+.... ..+ +++|++++|.+++ +|
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n-~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp 87 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWS-EWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LP 87 (454)
T ss_dssp ------------------------CCHHHHHHHHH-HHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CC
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCC-cccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CC
Confidence 6788999999988 478888899999999888887 45544444333 243 3566666665552 23
Q ss_pred ccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcCCcCCCCC
Q 037786 101 DSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRI 180 (565)
Q Consensus 101 ~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L 180 (565)
.. .++|++|++++|.+++ .|.. .++|++|++++|.+.+ ++.. .++|++|++++|.+.+. +.++.+++|
T Consensus 88 ~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~l-p~~~~l~~L 155 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEKL-PELQNSSFL 155 (454)
T ss_dssp SC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSSC-CCCTTCTTC
T ss_pred CC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCCC-cccCCCCCC
Confidence 21 2455666666555554 2221 2455566665555542 1111 14555555555555542 245555555
Q ss_pred CEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCCCCCCCcEEEccCCcc
Q 037786 181 SRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRL 260 (565)
Q Consensus 181 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 260 (565)
++|++++|++.+ +|.. .++|++|++++|.+.+ .+ .+..+++|+.|++++|.+.+
T Consensus 156 ~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-------------------- 209 (454)
T 1jl5_A 156 KIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-------------------- 209 (454)
T ss_dssp CEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS--------------------
T ss_pred CEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc--------------------
Confidence 555555555543 2222 1355555555555543 22 34455555555555554443
Q ss_pred ccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCch
Q 037786 261 HGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSF 340 (565)
Q Consensus 261 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~ 340 (565)
++.. .++|+.|++++|.+. .++ .+..+++|++|++++|.++... ..+++|+.|++++|.++.+|..
T Consensus 210 ---l~~~---~~~L~~L~l~~n~l~-~lp--~~~~l~~L~~L~l~~N~l~~l~-----~~~~~L~~L~l~~N~l~~l~~~ 275 (454)
T 1jl5_A 210 ---LPDL---PLSLESIVAGNNILE-ELP--ELQNLPFLTTIYADNNLLKTLP-----DLPPSLEALNVRDNYLTDLPEL 275 (454)
T ss_dssp ---CCCC---CTTCCEEECCSSCCS-SCC--CCTTCTTCCEEECCSSCCSSCC-----SCCTTCCEEECCSSCCSCCCCC
T ss_pred ---CCCC---cCcccEEECcCCcCC-ccc--ccCCCCCCCEEECCCCcCCccc-----ccccccCEEECCCCcccccCcc
Confidence 2211 135566666666555 222 2555666666666666655311 1235677777777777766643
Q ss_pred hhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCCCCCCCCeEEcCCCcccccCCCCCCCCcEEEcc
Q 037786 341 LRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLAS 420 (565)
Q Consensus 341 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~ 420 (565)
. .+|+.|++++|.+++ ++. .+++|+.|++++|.++.++.. .++|++|++++|++.+ .|..+++|++|+++
T Consensus 276 ~--~~L~~L~ls~N~l~~-l~~-----~~~~L~~L~l~~N~l~~i~~~-~~~L~~L~Ls~N~l~~-lp~~~~~L~~L~L~ 345 (454)
T 1jl5_A 276 P--QSLTFLDVSENIFSG-LSE-----LPPNLYYLNASSNEIRSLCDL-PPSLEELNVSNNKLIE-LPALPPRLERLIAS 345 (454)
T ss_dssp C--TTCCEEECCSSCCSE-ESC-----CCTTCCEEECCSSCCSEECCC-CTTCCEEECCSSCCSC-CCCCCTTCCEEECC
T ss_pred c--CcCCEEECcCCccCc-ccC-----cCCcCCEEECcCCcCCcccCC-cCcCCEEECCCCcccc-ccccCCcCCEEECC
Confidence 2 367778888777764 221 126788888888888776532 2588999999998886 66668999999999
Q ss_pred ccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcccCCCcccEEECCCCcccccCCCCCCCCcEeecc
Q 037786 421 NNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLLVPPSSLRVILIL 500 (565)
Q Consensus 421 ~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~ 500 (565)
+|++++ ++. .+ ++|++|++++|++.++|. ....+..| +.|...+.+|..+++|+.|+++
T Consensus 346 ~N~l~~-lp~---~l--------------~~L~~L~L~~N~l~~l~~-ip~~l~~L--~~n~~~~~i~~~~~~L~~L~ls 404 (454)
T 1jl5_A 346 FNHLAE-VPE---LP--------------QNLKQLHVEYNPLREFPD-IPESVEDL--RMNSHLAEVPELPQNLKQLHVE 404 (454)
T ss_dssp SSCCSC-CCC---CC--------------TTCCEEECCSSCCSSCCC-CCTTCCEE--ECCC------------------
T ss_pred CCcccc-ccc---hh--------------hhccEEECCCCCCCcCCC-ChHHHHhh--hhcccccccccccCcCCEEECC
Confidence 998884 333 23 899999999999998643 11234443 3566777777788999999999
Q ss_pred Cceeee--ccchhhhcCCCCCEEeCCCCcCcccCCCCCCCCCCCc
Q 037786 501 NNQFTG--EIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSPWC 543 (565)
Q Consensus 501 ~n~~~~--~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~ 543 (565)
+|.+++ .+| ++|+.|.+++|.+.+..|.+........
T Consensus 405 ~N~l~~~~~iP------~sl~~L~~~~~~~~~~~~~~~~~~~~~~ 443 (454)
T 1jl5_A 405 TNPLREFPDIP------ESVEDLRMNSERVVDPYEFAHETTDKLE 443 (454)
T ss_dssp ---------------------------------------------
T ss_pred CCcCCccccch------hhHhheeCcCcccCCccccCHHHhhhcc
Confidence 999986 344 3678888999999887776665544433
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=293.26 Aligned_cols=358 Identities=19% Similarity=0.191 Sum_probs=242.2
Q ss_pred CeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcC-CcCCCCCCEEeccCCcccc-cCCCCCcCCCCCCEEEccc
Q 037786 134 AVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD-IMNLTRISRLDISNNQLTG-SIPSHGSGLQNLAVLRLYN 211 (565)
Q Consensus 134 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~ 211 (565)
+.++.+++.++ .+|. + .+++++|++++|.+....+. +..+++|++|++++|.+.+ ..+..|..+++|++|++++
T Consensus 13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 35666666665 3444 2 26788888888888766544 7888888888888887753 3456677788888888888
Q ss_pred ccccCCCchhhcCCCCCCEEEccCCcccccC--C--CCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCc
Q 037786 212 NTLSGTIPSWLFTLPLLRDIDLSDNQLTGHL--D--AFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGI 287 (565)
Q Consensus 212 ~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 287 (565)
|.+....+..+..+++|++|++++|.+.+.. . ....++|++|++++|.+++..+..
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------------------- 148 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS-------------------- 148 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG--------------------
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCccc--------------------
Confidence 8877666777777888888888777776421 1 113345555555555554433332
Q ss_pred cChHhhhcCCCCCEEEccCCccccccCCcccC-CCCCccEEEcCCCCCCCCCchh----------hccccceEeccCCcC
Q 037786 288 VEPYMLAKLVNLAALELSHNSLSFGTTSKVNS-SFPQIFILSLSACNISAFPSFL----------RSLELAYLDLSENNI 356 (565)
Q Consensus 288 ~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~-~~~~L~~L~l~~~~l~~l~~~~----------~~~~L~~L~l~~n~l 356 (565)
.+..+++|++|++++|.+.......+.. ....++.+++++|.+..++... ...+|+.|++++|.+
T Consensus 149 ----~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 224 (455)
T 3v47_A 149 ----FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF 224 (455)
T ss_dssp ----GGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCC
T ss_pred ----ccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcc
Confidence 2444444444444444444333322210 1134555555555555433221 112566666666666
Q ss_pred cccCChhhhhh-CCCCccEEEcCCCccCCccC---------------CCCCCCCeEEcCCCcccccCCCC---CCCCcEE
Q 037786 357 DGQIPNWMWEV-GKDTLSFLDLSHNFITEMKQ---------------IPWKNLKYLKLQSNLLQGPLPVP---PPRLQFL 417 (565)
Q Consensus 357 ~~~~~~~~~~~-~~~~L~~L~ls~n~l~~~~~---------------~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L 417 (565)
++..+..+... ..++++.|++++|....... ...++|+.|++++|.+.+..+.. +++|++|
T Consensus 225 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 304 (455)
T 3v47_A 225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQL 304 (455)
T ss_dssp CHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred cccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEE
Confidence 65554444321 12566666666664333211 13368999999999988766653 7899999
Q ss_pred EccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cc--cCCCcccEEECCCCcccccCCC---CC
Q 037786 418 LASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQ--ISWKNLGYLDLRSNLLQGPLLV---PP 491 (565)
Q Consensus 418 ~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~ls~n~l~~~~~~---~~ 491 (565)
++++|++++..+..+..+ ++|++|++++|.+.++ +. ..+++|+.|++++|.+++..+. .+
T Consensus 305 ~Ls~n~l~~~~~~~~~~l--------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 370 (455)
T 3v47_A 305 TLAQNEINKIDDNAFWGL--------------THLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL 370 (455)
T ss_dssp ECTTSCCCEECTTTTTTC--------------TTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred ECCCCcccccChhHhcCc--------------ccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccc
Confidence 999999998888888887 9999999999999888 43 6789999999999999876554 78
Q ss_pred CCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCC
Q 037786 492 SSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIP 533 (565)
Q Consensus 492 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p 533 (565)
++|++|++++|.+++..+..++.+++|++|++++|++.|..|
T Consensus 371 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 371 PNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999999999999998777788999999999999999998865
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=292.13 Aligned_cols=357 Identities=23% Similarity=0.216 Sum_probs=179.1
Q ss_pred cccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcCCcCCCCCC
Q 037786 102 SICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRIS 181 (565)
Q Consensus 102 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~ 181 (565)
.+.++++|++|++++|.+++. | .+..+++|++|++++|.+++. + ++.+++|++|++++|.+.+. .++.+++|+
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~--~~~~l~~L~ 109 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL--DVTPLTKLT 109 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC--CCTTCTTCC
T ss_pred ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee--ecCCCCcCC
Confidence 344445555555555554432 2 344455555555555554432 1 44445555555555554432 144455555
Q ss_pred EEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCCCCCCCcEEEccCCccc
Q 037786 182 RLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLH 261 (565)
Q Consensus 182 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 261 (565)
+|++++|.+.+. + +..+++|++|++++|.+.+. .+..+++|+.|++++|...+.......++|++|++++|.++
T Consensus 110 ~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 110 YLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp EEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCC
T ss_pred EEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccc
Confidence 555555554432 1 44445555555555554432 13444455555555553332222223344444444444444
Q ss_pred cCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCchh
Q 037786 262 GSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFL 341 (565)
Q Consensus 262 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~ 341 (565)
+ ++ +..+++|+.|++++|.+.+. .++.+++|++|++++|+++... ...+++|+.|++++|+++.++. .
T Consensus 184 ~-l~--l~~l~~L~~L~l~~N~l~~~----~l~~l~~L~~L~Ls~N~l~~ip----~~~l~~L~~L~l~~N~l~~~~~-~ 251 (457)
T 3bz5_A 184 E-LD--VSQNKLLNRLNCDTNNITKL----DLNQNIQLTFLDCSSNKLTEID----VTPLTQLTYFDCSVNPLTELDV-S 251 (457)
T ss_dssp C-CC--CTTCTTCCEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCCC-T
T ss_pred e-ec--cccCCCCCEEECcCCcCCee----ccccCCCCCEEECcCCcccccC----ccccCCCCEEEeeCCcCCCcCH-H
Confidence 2 22 33344444444444444332 1334444444444444443311 1333444444444444443321 1
Q ss_pred hccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccC-CccCCCCCCCCeEEcCCCcccccCCCCCCCCcEEEcc
Q 037786 342 RSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFIT-EMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLAS 420 (565)
Q Consensus 342 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~ 420 (565)
...+|+.|++++|. |+.+++++|.+. .++...+++|+.|++++|+..+..|...++|+.++++
T Consensus 252 ~l~~L~~L~l~~n~----------------L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~ 315 (457)
T 3bz5_A 252 TLSKLTTLHCIQTD----------------LLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLS 315 (457)
T ss_dssp TCTTCCEEECTTCC----------------CSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCT
T ss_pred HCCCCCEEeccCCC----------------CCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechh
Confidence 11133333333221 222333333211 1121234455555555555444444444444444444
Q ss_pred ccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcccCCCcccEEECCCCcccccCCCCCCCCcEeecc
Q 037786 421 NNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLLVPPSSLRVILIL 500 (565)
Q Consensus 421 ~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~ 500 (565)
+| ++|++|++++|++++++...+++|+.|++++|++++ ++.|..|+++
T Consensus 316 ~~---------------------------~~L~~L~L~~N~l~~l~l~~l~~L~~L~l~~N~l~~-----l~~L~~L~l~ 363 (457)
T 3bz5_A 316 QN---------------------------PKLVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQD-----FSSVGKIPAL 363 (457)
T ss_dssp TC---------------------------TTCCEEECTTCCCSCCCCTTCTTCSEEECCSSCCCB-----CTTGGGSSGG
T ss_pred hc---------------------------ccCCEEECCCCcccccccccCCcCcEEECCCCCCCC-----cccccccccc
Confidence 43 678888888888888766778888888888888877 3677778888
Q ss_pred CceeeeccchhhhcCCCCCEEeCCCCcCcccCCCCC
Q 037786 501 NNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCI 536 (565)
Q Consensus 501 ~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l 536 (565)
+|.+++. ..+.+|+.+++++|.+.+.+|+.+
T Consensus 364 ~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 364 NNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp GTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred CCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence 8888765 356678888888888888888765
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-34 Score=291.32 Aligned_cols=374 Identities=18% Similarity=0.204 Sum_probs=284.8
Q ss_pred cEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccC--CCCCCCCCCcEEEc
Q 037786 13 QLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVF--PRSNWTSPLRCLDV 90 (565)
Q Consensus 13 ~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~--~~~~~~~~L~~L~l 90 (565)
+.++.+++++..++. ++++|++|++++|.+++..+..+.++++|++|++++| ...+.+ ..+..+++|++|++
T Consensus 13 ~~~~c~~~~l~~lp~-----l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 13 YNAICINRGLHQVPE-----LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQ-TPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp TEEECCSSCCSSCCC-----CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCC-STTCEECTTTTTTCTTCCEEEC
T ss_pred cccCcCCCCcccCCC-----CCCccCEEEecCCccCcCChhHhccCccccEEECcCC-cccceECcccccccccCCEEeC
Confidence 467888887776643 5689999999999999888999999999999999999 444332 33455699999999
Q ss_pred cCCccCccCCccccCCCCCCEEEcccccCcccCchh--ccCCCCCCeeeccCCcccccCCcC-ccCCCCCCEEEccCccc
Q 037786 91 SGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPAS--LGNVTQLAVLSLSFKSFSGHIPPS-LSNLHQLTDVDLGSNSF 167 (565)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~ 167 (565)
++|.+++..|..|.++++|++|++++|.+++..+.. |.++++|++|++++|.+.+..|.. +..+++|++|++++|.+
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 999999888899999999999999999988644444 889999999999999998776765 88999999999999998
Q ss_pred cccCcC-CcCC--CCCCEEeccCCcccccCCCC--------CcCCCCCCEEEcccccccCCCchhhcC---CCCCCEEEc
Q 037786 168 DGQFPD-IMNL--TRISRLDISNNQLTGSIPSH--------GSGLQNLAVLRLYNNTLSGTIPSWLFT---LPLLRDIDL 233 (565)
Q Consensus 168 ~~~~~~-~~~~--~~L~~L~l~~~~~~~~~~~~--------~~~~~~L~~L~l~~~~l~~~~~~~l~~---~~~L~~L~l 233 (565)
....+. +..+ .+|+.++++++.+.+..+.. +..+++|++|++++|.+.+..+..+.. .++++.+++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 876554 5544 68899999999887654433 235678999999999887666655543 378889999
Q ss_pred cCCcccccCCCCCCCCCcEEEccCCccccCCchhhh--cCCCcCccccccccccCccChHhhhcCCCCCEEEccCCcccc
Q 037786 234 SDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIF--ELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSF 311 (565)
Q Consensus 234 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~ 311 (565)
++|...+..... +.+.+.....+. ..++|+.+++++|.+.+.. +..+..+++|++|++++|.+..
T Consensus 247 ~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~ 313 (455)
T 3v47_A 247 SNSYNMGSSFGH------------TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL-KSVFSHFTDLEQLTLAQNEINK 313 (455)
T ss_dssp TTCTTTSCCTTC------------CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC-TTTTTTCTTCCEEECTTSCCCE
T ss_pred ccccccccccch------------hhhccCcccccccccccCceEEEecCccccccc-hhhcccCCCCCEEECCCCcccc
Confidence 888765432111 111111111222 2367888888888877543 3567788888888888888876
Q ss_pred ccCCcccCCCCCccEEEcCCCCCCCCCc-hhhc-cccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCC-
Q 037786 312 GTTSKVNSSFPQIFILSLSACNISAFPS-FLRS-LELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI- 388 (565)
Q Consensus 312 ~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~- 388 (565)
..+..+ ..+++|+.|++++|.++.++. .+.. .+|++|++++|.+++..|..+. .+++|++|++++|+++.++..
T Consensus 314 ~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~ 390 (455)
T 3v47_A 314 IDDNAF-WGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL--GLPNLKELALDTNQLKSVPDGI 390 (455)
T ss_dssp ECTTTT-TTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCSCCCTTT
T ss_pred cChhHh-cCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc--ccccccEEECCCCccccCCHhH
Confidence 555444 677888888888888876643 3333 3889999999988866676665 578999999999999998873
Q ss_pred --CCCCCCeEEcCCCcccccCC
Q 037786 389 --PWKNLKYLKLQSNLLQGPLP 408 (565)
Q Consensus 389 --~~~~L~~L~l~~n~~~~~~~ 408 (565)
.+++|++|++++|++.+..|
T Consensus 391 ~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 391 FDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTTCTTCCEEECCSSCBCCCTT
T ss_pred hccCCcccEEEccCCCcccCCC
Confidence 67899999999999987654
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-33 Score=285.52 Aligned_cols=341 Identities=25% Similarity=0.320 Sum_probs=180.9
Q ss_pred CCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcCCcCCCCCCEEec
Q 037786 106 LRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDI 185 (565)
Q Consensus 106 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l 185 (565)
+++++.|++.++.+... + .+..+++|++|++++|.+.+.. . +..+++|++|++++|.+....+ +..+++|++|++
T Consensus 45 l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTDIT-P-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL 119 (466)
T ss_dssp HHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred hccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccCCch-h-hhccccCCEEECCCCccccChh-hcCCCCCCEEEC
Confidence 45677777777776543 2 3667777777777777776433 3 6777777777777777765544 667777777777
Q ss_pred cCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCCCCCCCcEEEccCCccccCCc
Q 037786 186 SNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIP 265 (565)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 265 (565)
++|.+.+..+ +..+++|++|++++|.+... ..+..+++|+.|+++ +.+.....
T Consensus 120 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~~~---------------------- 172 (466)
T 1o6v_A 120 FNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLKP---------------------- 172 (466)
T ss_dssp CSSCCCCCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCCGG----------------------
T ss_pred CCCCCCCChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCchh----------------------
Confidence 7777664432 66677777777777766532 235666666666664 22222222
Q ss_pred hhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCchhhccc
Q 037786 266 SSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLE 345 (565)
Q Consensus 266 ~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~ 345 (565)
+..+++|+.|++++|.+... ..+..+++|++|++++|.+....+ ...+++|+.|++++|.++.++.+....+
T Consensus 173 --~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~l~~l~~ 244 (466)
T 1o6v_A 173 --LANLTTLERLDISSNKVSDI---SVLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIGTLASLTN 244 (466)
T ss_dssp --GTTCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGGGCTT
T ss_pred --hccCCCCCEEECcCCcCCCC---hhhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccchhhhcCCC
Confidence 33444444444444444322 124444555555555554443222 1334455555555555554443333335
Q ss_pred cceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccC-CCCCCCCeEEcCCCcccccCCC-CCCCCcEEEccccc
Q 037786 346 LAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQ-IPWKNLKYLKLQSNLLQGPLPV-PPPRLQFLLASNNQ 423 (565)
Q Consensus 346 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~L~~L~l~~n~~~~~~~~-~~~~L~~L~l~~n~ 423 (565)
|+.|++++|.+.+..+ +. .+++|+.|++++|.++.+++ ..+++|+.|++++|++.+..+. .+++|++|++++|+
T Consensus 245 L~~L~l~~n~l~~~~~--~~--~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 245 LTDLDLANNQISNLAP--LS--GLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN 320 (466)
T ss_dssp CSEEECCSSCCCCCGG--GT--TCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSC
T ss_pred CCEEECCCCccccchh--hh--cCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCc
Confidence 5555555555542222 11 34555555555555555443 2444555555555554432221 14555555555555
Q ss_pred cCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcc-cCCCcccEEECCCCcccccCCC-CCCCCcEeeccC
Q 037786 424 FTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQ-ISWKNLGYLDLRSNLLQGPLLV-PPSSLRVILILN 501 (565)
Q Consensus 424 i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~l~~ 501 (565)
+++..+ +..+ ++|++|++++|++.+.+. ..+++|+.|++++|.+++..|. .+++|+.|++++
T Consensus 321 l~~~~~--~~~l--------------~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~ 384 (466)
T 1o6v_A 321 ISDISP--VSSL--------------TKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLND 384 (466)
T ss_dssp CSCCGG--GGGC--------------TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCC
T ss_pred CCCchh--hccC--------------ccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccC
Confidence 544333 3333 555555555555555522 4455555555555555443322 445555555555
Q ss_pred ceeee
Q 037786 502 NQFTG 506 (565)
Q Consensus 502 n~~~~ 506 (565)
|.+++
T Consensus 385 n~~~~ 389 (466)
T 1o6v_A 385 QAWTN 389 (466)
T ss_dssp EEEEC
T ss_pred CcccC
Confidence 55543
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-33 Score=284.14 Aligned_cols=341 Identities=27% Similarity=0.366 Sum_probs=238.3
Q ss_pred CCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEc
Q 037786 83 SPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDL 162 (565)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 162 (565)
++++.|++.++.+. .+| .+..+++|++|++++|.+++..+ +.++++|++|++++|.+.+..+ +..+++|++|++
T Consensus 46 ~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L 119 (466)
T 1o6v_A 46 DQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119 (466)
T ss_dssp HTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred ccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence 78999999999988 455 48889999999999999987654 8999999999999999985443 899999999999
Q ss_pred cCccccccCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccC
Q 037786 163 GSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHL 242 (565)
Q Consensus 163 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 242 (565)
++|.+....+ +..+++|++|++++|.+.+. + .+..+++|+.|++++ .+... ..+..+++|+.|++++|.+.+..
T Consensus 120 ~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~~-~~~~~--~~~~~l~~L~~L~l~~n~l~~~~ 193 (466)
T 1o6v_A 120 FNNQITDIDP-LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFGN-QVTDL--KPLANLTTLERLDISSNKVSDIS 193 (466)
T ss_dssp CSSCCCCCGG-GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEEE-SCCCC--GGGTTCTTCCEEECCSSCCCCCG
T ss_pred CCCCCCCChH-HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecCC-cccCc--hhhccCCCCCEEECcCCcCCCCh
Confidence 9999886544 88999999999999998853 3 488899999999974 44322 34888999999999999887654
Q ss_pred CCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCC
Q 037786 243 DAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFP 322 (565)
Q Consensus 243 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~ 322 (565)
.....++|++|++++|.+.+..+ +..+++|+.|++++|.+... ..+..+++|+.|++++|.+..... ...++
T Consensus 194 ~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~ 265 (466)
T 1o6v_A 194 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQISNLAP---LSGLT 265 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGG---GTTCT
T ss_pred hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc---hhhhcCCCCCEEECCCCccccchh---hhcCC
Confidence 43455667777777776664332 45566666666666666543 235556666666666666553322 24455
Q ss_pred CccEEEcCCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCC-CCCCCCeEEcCCC
Q 037786 323 QIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI-PWKNLKYLKLQSN 401 (565)
Q Consensus 323 ~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~l~~n 401 (565)
+|+.|++++|.++.++.+. .+++|+.|++++|+++.+++. .+++|+.|++++|
T Consensus 266 ~L~~L~l~~n~l~~~~~~~--------------------------~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 266 KLTELKLGANQISNISPLA--------------------------GLTALTNLELNENQLEDISPISNLKNLTYLTLYFN 319 (466)
T ss_dssp TCSEEECCSSCCCCCGGGT--------------------------TCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSS
T ss_pred CCCEEECCCCccCcccccc--------------------------CCCccCeEEcCCCcccCchhhcCCCCCCEEECcCC
Confidence 5555555555555444422 334445555555544444432 4455555555555
Q ss_pred cccccCCC-CCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cccCCCcccEEECC
Q 037786 402 LLQGPLPV-PPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQISWKNLGYLDLR 479 (565)
Q Consensus 402 ~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~L~~L~ls 479 (565)
++.+..+. .+++|++|++++|++++. ..+..+ ++|++|++++|++.+. |...+++|+.|+++
T Consensus 320 ~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l--------------~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~ 383 (466)
T 1o6v_A 320 NISDISPVSSLTKLQRLFFYNNKVSDV--SSLANL--------------TNINWLSAGHNQISDLTPLANLTRITQLGLN 383 (466)
T ss_dssp CCSCCGGGGGCTTCCEEECCSSCCCCC--GGGTTC--------------TTCCEEECCSSCCCBCGGGTTCTTCCEEECC
T ss_pred cCCCchhhccCccCCEeECCCCccCCc--hhhccC--------------CCCCEEeCCCCccCccchhhcCCCCCEEecc
Confidence 55544332 266677777777776654 345555 7788888888887777 55777788888888
Q ss_pred CCcccc
Q 037786 480 SNLLQG 485 (565)
Q Consensus 480 ~n~l~~ 485 (565)
+|.+++
T Consensus 384 ~n~~~~ 389 (466)
T 1o6v_A 384 DQAWTN 389 (466)
T ss_dssp CEEEEC
T ss_pred CCcccC
Confidence 887766
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-33 Score=282.17 Aligned_cols=362 Identities=17% Similarity=0.195 Sum_probs=232.6
Q ss_pred cCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccC
Q 037786 50 EFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGN 129 (565)
Q Consensus 50 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~ 129 (565)
..+..++++++|++|++++| .+.+. +.+..+++|++|++++|.+++. + +..+++|++|++++|.+++. .+++
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n-~l~~~-~~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~---~~~~ 104 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNS-SITDM-TGIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL---DVTP 104 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSS-CCCCC-TTGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC---CCTT
T ss_pred ccccChhHcCCCCEEEccCC-CcccC-hhhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee---ecCC
Confidence 34456677788888888777 44433 3444446677777777666642 2 56666666666666666553 2566
Q ss_pred CCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEc
Q 037786 130 VTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRL 209 (565)
Q Consensus 130 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 209 (565)
+++|++|++++|.+++ ++ +..+++|++|++++|.+.+. .++.+++|+.|++++|...+.. .+..+++|+.|++
T Consensus 105 l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 177 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDC 177 (457)
T ss_dssp CTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEEC
T ss_pred CCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEEC
Confidence 6666666666666654 22 55666666666666665543 2555566666666665332222 2444555555555
Q ss_pred ccccccCCCchhhcCCCCCCEEEccCCcccccCCCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccC
Q 037786 210 YNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVE 289 (565)
Q Consensus 210 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 289 (565)
++|.+.+. + +..+++ |+.|++++|.+++. .+..+++|+.|++++|.+.+. +
T Consensus 178 s~n~l~~l-~--l~~l~~----------------------L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p 228 (457)
T 3bz5_A 178 SFNKITEL-D--VSQNKL----------------------LNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D 228 (457)
T ss_dssp CSSCCCCC-C--CTTCTT----------------------CCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C
T ss_pred CCCcccee-c--cccCCC----------------------CCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C
Confidence 55555432 1 344444 55555555554432 245566777777777777652 2
Q ss_pred hHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhCC
Q 037786 290 PYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGK 369 (565)
Q Consensus 290 ~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 369 (565)
+..+++|+.|++++|+++... ...+++|+.|++++++ |+.+++++|.+.+.+|.. .+
T Consensus 229 ---~~~l~~L~~L~l~~N~l~~~~----~~~l~~L~~L~l~~n~------------L~~L~l~~n~~~~~~~~~----~l 285 (457)
T 3bz5_A 229 ---VTPLTQLTYFDCSVNPLTELD----VSTLSKLTTLHCIQTD------------LLEIDLTHNTQLIYFQAE----GC 285 (457)
T ss_dssp ---CTTCTTCSEEECCSSCCSCCC----CTTCTTCCEEECTTCC------------CSCCCCTTCTTCCEEECT----TC
T ss_pred ---ccccCCCCEEEeeCCcCCCcC----HHHCCCCCEEeccCCC------------CCEEECCCCccCCccccc----cc
Confidence 566777777777777776543 2456777777777653 556777777766665522 56
Q ss_pred CCccEEEcCCCccCCccCCCCCCCCeEEcCCCcccccCCCCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCC
Q 037786 370 DTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGK 449 (565)
Q Consensus 370 ~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~ 449 (565)
++|+.|++++|......+...++|+.|++++| ++|++|++++|++++. .+..+
T Consensus 286 ~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~----------~~L~~L~L~~N~l~~l---~l~~l-------------- 338 (457)
T 3bz5_A 286 RKIKELDVTHNTQLYLLDCQAAGITELDLSQN----------PKLVYLYLNNTELTEL---DVSHN-------------- 338 (457)
T ss_dssp TTCCCCCCTTCTTCCEEECTTCCCSCCCCTTC----------TTCCEEECTTCCCSCC---CCTTC--------------
T ss_pred ccCCEEECCCCcccceeccCCCcceEechhhc----------ccCCEEECCCCccccc---ccccC--------------
Confidence 88888888888765555556667777777666 5788999999998874 26666
Q ss_pred CCCcEEeCcCCCCCCCcccCCCcccEEECCCCcccccCCCCCCCCcEeeccCceeeeccchhh
Q 037786 450 DSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLLVPPSSLRVILILNNQFTGEIIHSI 512 (565)
Q Consensus 450 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l 512 (565)
++|++|++++|+++++ +.|..|++++|.+.+. ..+..|+.+++++|.+++.+|..+
T Consensus 339 ~~L~~L~l~~N~l~~l-----~~L~~L~l~~n~l~g~--~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 339 TKLKSLSCVNAHIQDF-----SSVGKIPALNNNFEAE--GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp TTCSEEECCSSCCCBC-----TTGGGSSGGGTSEEEE--EEEEECCCBCCBTTBEEEECCTTC
T ss_pred CcCcEEECCCCCCCCc-----cccccccccCCcEEec--ceeeecCccccccCcEEEEcChhH
Confidence 8999999999988874 4566677888888764 345678888999999988887543
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=7.4e-31 Score=261.75 Aligned_cols=307 Identities=21% Similarity=0.197 Sum_probs=230.5
Q ss_pred CCCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEE
Q 037786 82 TSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVD 161 (565)
Q Consensus 82 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 161 (565)
..++++++++++.++...+..|..+++|++|++++|.+....+.+|.++++|++|++++|.+.+..+..+..+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 37788888888888855555578899999999999998888888899999999999999999877778888999999999
Q ss_pred ccCccccccCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccc
Q 037786 162 LGSNSFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG 240 (565)
Q Consensus 162 l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 240 (565)
+++|.+...++. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+... .+..+++|+.+++++|.+..
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc
Confidence 999998877666 68899999999999998877777888899999999999988754 35667889999999988775
Q ss_pred cCCCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCC
Q 037786 241 HLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSS 320 (565)
Q Consensus 241 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~ 320 (565)
.. ..+.+++|++++|.+... +.. ..++|+.|++++|.+.+. ..+..+++|++|++++|.+....+..+ ..
T Consensus 201 ~~---~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~ 270 (390)
T 3o6n_A 201 LA---IPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPF-VK 270 (390)
T ss_dssp EE---CCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGG-TT
T ss_pred cC---CCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc---HHHcCCCCccEEECCCCcCCCcChhHc-cc
Confidence 32 335788899998888743 322 246888888888888754 357888888888888888876555444 67
Q ss_pred CCCccEEEcCCCCCCCCCchhhcc-ccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCCCCCCCCeEEcC
Q 037786 321 FPQIFILSLSACNISAFPSFLRSL-ELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQ 399 (565)
Q Consensus 321 ~~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~ 399 (565)
+++|+.|++++|+++.++...... +|+.|++++|++. .+|..+. .+++|+.|++++|+++.++...+++|+.|+++
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~--~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~ 347 (390)
T 3o6n_A 271 MQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQP--QFDRLENLYLDHNSIVTLKLSTHHTLKNLTLS 347 (390)
T ss_dssp CSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHH--HHTTCSEEECCSSCCCCCCCCTTCCCSEEECC
T ss_pred cccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCcccc--ccCcCCEEECCCCccceeCchhhccCCEEEcC
Confidence 788888888888887666544332 6677777777666 4444443 23556666666666555544444445555544
Q ss_pred CCccc
Q 037786 400 SNLLQ 404 (565)
Q Consensus 400 ~n~~~ 404 (565)
+|++.
T Consensus 348 ~N~~~ 352 (390)
T 3o6n_A 348 HNDWD 352 (390)
T ss_dssp SSCEE
T ss_pred CCCcc
Confidence 44443
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=6.8e-31 Score=269.45 Aligned_cols=317 Identities=19% Similarity=0.162 Sum_probs=253.6
Q ss_pred CcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCC-CCCCCCCCcEEEc
Q 037786 12 LQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFP-RSNWTSPLRCLDV 90 (565)
Q Consensus 12 L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~l 90 (565)
-+.++.+++++..++. .+++++++|++++|.+++..+..|.++++|++|++++| .+.+..+ .+..+++|++|++
T Consensus 13 ~~~v~c~~~~l~~ip~----~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L 87 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPE----GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGL 87 (477)
T ss_dssp TTEEECCSCCCSSCCS----CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcCcCCC----CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEEC
Confidence 3577888877776543 34578899999999888777888888999999999988 5555533 4455588999999
Q ss_pred cCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCcccccc
Q 037786 91 SGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQ 170 (565)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 170 (565)
++|.++...+..|.++++|++|++++|.+....+..|.++++|+.|++++|.+....+..|..+++|+.|++++|.+...
T Consensus 88 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 88 RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp CSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred CCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence 99988866566678889999999999988888888888899999999999988877788888889999999999988766
Q ss_pred CcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCC--CCCC
Q 037786 171 FPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLD--AFPS 247 (565)
Q Consensus 171 ~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~ 247 (565)
.+. +..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+..+.......+|+.|++++|.+..... ....
T Consensus 168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 247 (477)
T 2id5_A 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL 247 (477)
T ss_dssp CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC
T ss_pred ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCc
Confidence 654 7788899999999998887777788888999999999887665555555556689999999998875442 2266
Q ss_pred CCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEE
Q 037786 248 KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFIL 327 (565)
Q Consensus 248 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L 327 (565)
++|+.|++++|.+++..+..+..+++|+.|++++|.+... .+..+..+++|+.|++++|.++..... .+..+++|+.|
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L 325 (477)
T 2id5_A 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVV-EPYAFRGLNYLRVLNVSGNQLTTLEES-VFHSVGNLETL 325 (477)
T ss_dssp TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEE-CTTTBTTCTTCCEEECCSSCCSCCCGG-GBSCGGGCCEE
T ss_pred cccCeeECCCCcCCccChhhccccccCCEEECCCCccceE-CHHHhcCcccCCEEECCCCcCceeCHh-HcCCCcccCEE
Confidence 8899999999988876667788888999999999988754 345788889999999999988764443 34778889999
Q ss_pred EcCCCCCC
Q 037786 328 SLSACNIS 335 (565)
Q Consensus 328 ~l~~~~l~ 335 (565)
++++|.+.
T Consensus 326 ~l~~N~l~ 333 (477)
T 2id5_A 326 ILDSNPLA 333 (477)
T ss_dssp ECCSSCEE
T ss_pred EccCCCcc
Confidence 99999876
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=8e-31 Score=268.90 Aligned_cols=317 Identities=19% Similarity=0.188 Sum_probs=245.8
Q ss_pred ccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCC-CCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEcc
Q 037786 37 LTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFP-RSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLS 115 (565)
Q Consensus 37 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~ 115 (565)
-+.++.++..++ .+|..+. +++++|++++| .+.+..+ .+..+++|++|++++|.+++..|..|.++++|++|+++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGIP--TETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TTEEECCSCCCS-SCCSCCC--TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECC
Confidence 456777777776 4555443 57888888888 5555443 44555888899998888887778888888889999998
Q ss_pred cccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcC-CcCCCCCCEEeccCCcccccC
Q 037786 116 QCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD-IMNLTRISRLDISNNQLTGSI 194 (565)
Q Consensus 116 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~ 194 (565)
+|.++...+..|.++++|++|++++|.+....+..+..+++|+.|++++|.+....+. +..+++|+.|++++|.+++..
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 8888877777788888889999988888877788888888888998888888766554 788888888888888888665
Q ss_pred CCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCC--CCCCCcEEEccCCccccCCchhhhcCC
Q 037786 195 PSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF--PSKSLRKLYLTNNRLHGSIPSSIFELA 272 (565)
Q Consensus 195 ~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~ 272 (565)
+..+..+++|+.|++++|.+....+..+..+++|+.|++++|...+..+.. ...+|++|++++|.++...+..+..++
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 248 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV 248 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc
Confidence 566778888888998888887666677888888888888888766544332 445788888888888854445677888
Q ss_pred CcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCchh-h-ccccceEe
Q 037786 273 NLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFL-R-SLELAYLD 350 (565)
Q Consensus 273 ~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~-~-~~~L~~L~ 350 (565)
+|+.|++++|.+... ++..+..+++|++|++++|.+....+..+ ..+++|+.|++++|.++.++... . ..+|+.|+
T Consensus 249 ~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 326 (477)
T 2id5_A 249 YLRFLNLSYNPISTI-EGSMLHELLRLQEIQLVGGQLAVVEPYAF-RGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLI 326 (477)
T ss_dssp TCCEEECCSSCCCEE-CTTSCTTCTTCCEEECCSSCCSEECTTTB-TTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEE
T ss_pred ccCeeECCCCcCCcc-ChhhccccccCCEEECCCCccceECHHHh-cCcccCCEEECCCCcCceeCHhHcCCCcccCEEE
Confidence 888899988888744 44567888888889998888876655544 77888888899888888777543 2 23888888
Q ss_pred ccCCcCccc
Q 037786 351 LSENNIDGQ 359 (565)
Q Consensus 351 l~~n~l~~~ 359 (565)
+++|++...
T Consensus 327 l~~N~l~c~ 335 (477)
T 2id5_A 327 LDSNPLACD 335 (477)
T ss_dssp CCSSCEECS
T ss_pred ccCCCccCc
Confidence 888888743
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-31 Score=262.73 Aligned_cols=303 Identities=21% Similarity=0.168 Sum_probs=196.3
Q ss_pred CCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCC--CCCCCCcEEEccCCccccCCchhhhcCCCcCcccc
Q 037786 202 QNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDA--FPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSL 279 (565)
Q Consensus 202 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 279 (565)
++++.++++++.+....+..+..+++|++|++++|.+.+.... ...++|++|++++|.+++..+..+..+++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 3444444444444433333344444555555555544433221 13445555555555555444445556666666666
Q ss_pred ccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCchhhccccceEeccCCcCccc
Q 037786 280 ASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQ 359 (565)
Q Consensus 280 ~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~ 359 (565)
++|.+.. ++...+..+++|++|++++|.+.......+ ..+++|+.|++++|.++.++ .....+|+.+++++|.+++
T Consensus 125 ~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~-~~~l~~L~~L~l~~n~l~~- 200 (390)
T 3o6n_A 125 ERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTF-QATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLST- 200 (390)
T ss_dssp CSSCCCC-CCTTTTTTCTTCCEEECCSSCCCBCCTTTT-SSCTTCCEEECCSSCCSBCC-GGGCTTCSEEECCSSCCSE-
T ss_pred CCCccCc-CCHHHhcCCCCCcEEECCCCccCccChhhc-cCCCCCCEEECCCCcCCccc-cccccccceeecccccccc-
Confidence 6666653 333445666666666666666654433333 55666677777766666543 1222367777777776652
Q ss_pred CChhhhhhCCCCccEEEcCCCccCCccCCCCCCCCeEEcCCCcccccCC-CCCCCCcEEEccccccCccchhhhhhcCCC
Q 037786 360 IPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLP-VPPPRLQFLLASNNQFTGEIIQSICSSSTL 438 (565)
Q Consensus 360 ~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~ 438 (565)
++ ..+.|+.|++++|.++.++...+++|+.|++++|.+.+... ..+++|++|++++|++++..+..+..+
T Consensus 201 ~~------~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l--- 271 (390)
T 3o6n_A 201 LA------IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKM--- 271 (390)
T ss_dssp EE------CCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTC---
T ss_pred cC------CCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHcccc---
Confidence 11 23578888888888877777667788888888888775421 127888888888888888778888777
Q ss_pred CCCccccccCCCCCcEEeCcCCCCCCCcc--cCCCcccEEECCCCcccccCCC--CCCCCcEeeccCceeeeccchhhhc
Q 037786 439 EIPSWISEIGKDSLSYLNLSHNFITKMKQ--ISWKNLGYLDLRSNLLQGPLLV--PPSSLRVILILNNQFTGEIIHSICD 514 (565)
Q Consensus 439 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~l~~n~~~~~~~~~l~~ 514 (565)
++|++|++++|++..+|. ..+++|+.|++++|.+.+..+. .+++|++|++++|.+++.. +..
T Consensus 272 -----------~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~ 337 (390)
T 3o6n_A 272 -----------QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK---LST 337 (390)
T ss_dssp -----------SSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC---CCT
T ss_pred -----------ccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC---chh
Confidence 888899999998888843 5678899999999988753222 6788899999999887543 677
Q ss_pred CCCCCEEeCCCCcCccc
Q 037786 515 IIALDVLDLSNNRLSGT 531 (565)
Q Consensus 515 ~~~L~~L~l~~n~~~~~ 531 (565)
+++|+.|++++|++.+.
T Consensus 338 ~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 338 HHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp TCCCSEEECCSSCEEHH
T ss_pred hccCCEEEcCCCCccch
Confidence 88899999999998864
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-30 Score=253.12 Aligned_cols=303 Identities=23% Similarity=0.325 Sum_probs=163.8
Q ss_pred CCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEc
Q 037786 35 SSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHL 114 (565)
Q Consensus 35 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 114 (565)
++|++|+++++.+.. .+ .+..+++|++|++++| .+.+..+ +..+++|++|++++|.++. + ..+..+++|++|++
T Consensus 44 ~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l 117 (347)
T 4fmz_A 44 ESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYL 117 (347)
T ss_dssp TTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEEC
T ss_pred ccccEEEEeCCcccc-ch-hhhhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEEC
Confidence 455555555555542 22 2445555555555554 2322222 3333555555555555542 2 23555566666666
Q ss_pred ccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcCCcCCCCCCEEeccCCcccccC
Q 037786 115 SQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSI 194 (565)
Q Consensus 115 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 194 (565)
++|.+....+ +..+++|+.|++++|..... +..+..+++|++|++++|.+....+ +..+++|+.|++++|.+.+..
T Consensus 118 ~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~ 193 (347)
T 4fmz_A 118 NEDNISDISP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDIS 193 (347)
T ss_dssp TTSCCCCCGG--GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCG
T ss_pred cCCcccCchh--hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccc
Confidence 6555553322 55556666666665543322 2235555666666666655543322 555566666666666555332
Q ss_pred CCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCCCCCCCcEEEccCCccccCCchhhhcCCCc
Q 037786 195 PSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANL 274 (565)
Q Consensus 195 ~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 274 (565)
+ +..+++|+.+++++|.+....+ +..+++|+.|++++|.+.+.......++|++|++++|.+++. ..+..+++|
T Consensus 194 ~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L 267 (347)
T 4fmz_A 194 P--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI--NAVKDLTKL 267 (347)
T ss_dssp G--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred c--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCC--hhHhcCCCc
Confidence 2 4555666666666665553322 555666666666666665444434555666666666666532 345566666
Q ss_pred CccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCchhhccccceEeccCC
Q 037786 275 TYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSEN 354 (565)
Q Consensus 275 ~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n 354 (565)
+.|++++|.+... ..+..+++|++|++++|.++...+..+ ..+++|+.|++++|+++.++......+|+.|++++|
T Consensus 268 ~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N 343 (347)
T 4fmz_A 268 KMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGNEDMEVI-GGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQ 343 (347)
T ss_dssp CEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCGGGHHHH-HTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC
T ss_pred CEEEccCCccCCC---hhhcCCCCCCEEECcCCcCCCcChhHh-hccccCCEEEccCCccccccChhhhhccceeehhhh
Confidence 7777766666543 235666677777777776654443333 556667777777777666655444446777777777
Q ss_pred cCc
Q 037786 355 NID 357 (565)
Q Consensus 355 ~l~ 357 (565)
+++
T Consensus 344 ~i~ 346 (347)
T 4fmz_A 344 VIK 346 (347)
T ss_dssp ---
T ss_pred ccc
Confidence 654
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.9e-30 Score=251.81 Aligned_cols=306 Identities=20% Similarity=0.293 Sum_probs=163.2
Q ss_pred ccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCC
Q 037786 55 IFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLA 134 (565)
Q Consensus 55 ~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~ 134 (565)
+..+++|++|+++++ .... ++.+..+++|++|++++|.++.. +. +..+++|++|++++|.++.. .++.++++|+
T Consensus 40 ~~~l~~L~~L~l~~~-~i~~-~~~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGE-KVAS-IQGIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDI--SALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSS-CCCC-CTTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred chhcccccEEEEeCC-cccc-chhhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence 345666666666665 2222 22333345555555555555532 22 55555555555555555432 2355555555
Q ss_pred eeeccCCcccccCCcCccCCCCCCEEEccCccccccCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccc
Q 037786 135 VLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTL 214 (565)
Q Consensus 135 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 214 (565)
+|++++|.+.+. +. +..+++|+.|++++|......+.+..+++|+.|++++|.+.+..+
T Consensus 114 ~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~------------------- 172 (347)
T 4fmz_A 114 ELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP------------------- 172 (347)
T ss_dssp EEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-------------------
T ss_pred EEECcCCcccCc-hh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-------------------
Confidence 555555555422 22 445555555555555433333334444445555554444432221
Q ss_pred cCCCchhhcCCCCCCEEEccCCcccccCCCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhh
Q 037786 215 SGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLA 294 (565)
Q Consensus 215 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~ 294 (565)
+..+++|+.|++++|.+.+.......++|+.+++++|.+.+..+ +..+++|+.|++++|.+.... .+.
T Consensus 173 -------~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~---~~~ 240 (347)
T 4fmz_A 173 -------IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS---PLA 240 (347)
T ss_dssp -------GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG---GGT
T ss_pred -------hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCc---chh
Confidence 34444444444444444433322234445555555555443222 555666666666666665431 156
Q ss_pred cCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccE
Q 037786 295 KLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSF 374 (565)
Q Consensus 295 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~ 374 (565)
.+++|++|++++|.++.. .....+++|+.|++++|.++.++.+....+|+.|++++|++++..+..+. .+++|+.
T Consensus 241 ~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~ 315 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQISDI---NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIG--GLTNLTT 315 (347)
T ss_dssp TCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHH--TCTTCSE
T ss_pred cCCCCCEEECCCCccCCC---hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhh--ccccCCE
Confidence 666777777777766543 12356667777777777776665444444777777777777655554444 4567777
Q ss_pred EEcCCCccCCccC-CCCCCCCeEEcCCCccc
Q 037786 375 LDLSHNFITEMKQ-IPWKNLKYLKLQSNLLQ 404 (565)
Q Consensus 375 L~ls~n~l~~~~~-~~~~~L~~L~l~~n~~~ 404 (565)
|++++|+++.+++ ..+++|++|++++|+++
T Consensus 316 L~L~~n~l~~~~~~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 316 LFLSQNHITDIRPLASLSKMDSADFANQVIK 346 (347)
T ss_dssp EECCSSSCCCCGGGGGCTTCSEESSSCC---
T ss_pred EEccCCccccccChhhhhccceeehhhhccc
Confidence 7777777776655 35666777777666654
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-30 Score=268.69 Aligned_cols=307 Identities=21% Similarity=0.202 Sum_probs=237.0
Q ss_pred CCCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEE
Q 037786 82 TSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVD 161 (565)
Q Consensus 82 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 161 (565)
..+++.++++++.+....+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|+.+++|+.|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 36788888888888866666678899999999999999888888899999999999999999887777888999999999
Q ss_pred ccCccccccCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccc
Q 037786 162 LGSNSFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG 240 (565)
Q Consensus 162 l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 240 (565)
+++|.+...++. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+... .+..+++|+.|++++|.+.+
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc
Confidence 999998877766 68899999999999999888888888899999999999988754 25567889999999988775
Q ss_pred cCCCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCC
Q 037786 241 HLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSS 320 (565)
Q Consensus 241 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~ 320 (565)
.. .+..|+.|++++|.+... +..+ .++|+.|++++|.+.+. ..+..+++|+.|++++|.+....+..+ ..
T Consensus 207 l~---~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~-~~ 276 (597)
T 3oja_B 207 LA---IPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPF-VK 276 (597)
T ss_dssp EE---CCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGG-TT
T ss_pred cc---CCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCccCCCCHHHh-cC
Confidence 32 345788999999888743 2222 36788899999888753 457888889999999888876655554 67
Q ss_pred CCCccEEEcCCCCCCCCCchhhcc-ccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCCCCCCCCeEEcC
Q 037786 321 FPQIFILSLSACNISAFPSFLRSL-ELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQ 399 (565)
Q Consensus 321 ~~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~ 399 (565)
+++|+.|++++|.++.++...... +|+.|++++|.++ .+|..+. .+++|+.|++++|.++.++...+++|+.|+++
T Consensus 277 l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~ 353 (597)
T 3oja_B 277 MQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQP--QFDRLENLYLDHNSIVTLKLSTHHTLKNLTLS 353 (597)
T ss_dssp CSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHH--HHTTCSEEECCSSCCCCCCCCTTCCCSEEECC
T ss_pred ccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccc--cCCCCCEEECCCCCCCCcChhhcCCCCEEEee
Confidence 788888888888888776555433 7777777777777 5555554 34667777777776666655555566666666
Q ss_pred CCccc
Q 037786 400 SNLLQ 404 (565)
Q Consensus 400 ~n~~~ 404 (565)
+|++.
T Consensus 354 ~N~~~ 358 (597)
T 3oja_B 354 HNDWD 358 (597)
T ss_dssp SSCEE
T ss_pred CCCCC
Confidence 55554
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.8e-30 Score=268.13 Aligned_cols=301 Identities=21% Similarity=0.170 Sum_probs=187.0
Q ss_pred CCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCC--CCCCCCcEEEccCCccccCCchhhhcCCCcCccccc
Q 037786 203 NLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDA--FPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLA 280 (565)
Q Consensus 203 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 280 (565)
+++.++++++.+....+..+..+++|+.|++++|.+.+..+. ...++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence 344444444444333333344444444444444444433221 133444555555555544444445555666666666
Q ss_pred cccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCchhhccccceEeccCCcCcccC
Q 037786 281 SNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQI 360 (565)
Q Consensus 281 ~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~ 360 (565)
+|.+.. +++..++.+++|+.|++++|.++...+..+ ..+++|+.|++++|.++.++. ....+|+.|++++|.+++ +
T Consensus 132 ~n~l~~-l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~-~~l~~L~~L~l~~n~l~~-l 207 (597)
T 3oja_B 132 RNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTF-QATTSLQNLQLSSNRLTHVDL-SLIPSLFHANVSYNLLST-L 207 (597)
T ss_dssp SSCCCC-CCTTTTTTCTTCCEEECCSSCCCBCCTTTT-TTCTTCCEEECTTSCCSBCCG-GGCTTCSEEECCSSCCSE-E
T ss_pred CCCCCC-CCHHHhccCCCCCEEEeeCCcCCCCChhhh-hcCCcCcEEECcCCCCCCcCh-hhhhhhhhhhcccCcccc-c
Confidence 666553 233445566666666666666654433333 555666666666666665431 122266677777766652 1
Q ss_pred ChhhhhhCCCCccEEEcCCCccCCccCCCCCCCCeEEcCCCcccccCC-CCCCCCcEEEccccccCccchhhhhhcCCCC
Q 037786 361 PNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLP-VPPPRLQFLLASNNQFTGEIIQSICSSSTLE 439 (565)
Q Consensus 361 ~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~ 439 (565)
+ .+++|+.|++++|.++.++....++|+.|++++|.+.+... ..+++|++|++++|.+++..+..+..+
T Consensus 208 ~------~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l---- 277 (597)
T 3oja_B 208 A------IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKM---- 277 (597)
T ss_dssp E------CCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTC----
T ss_pred c------CCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCc----
Confidence 1 34567777777777777777666778888888887775321 127888888888888887777777777
Q ss_pred CCccccccCCCCCcEEeCcCCCCCCCcc--cCCCcccEEECCCCcccccCCC---CCCCCcEeeccCceeeeccchhhhc
Q 037786 440 IPSWISEIGKDSLSYLNLSHNFITKMKQ--ISWKNLGYLDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEIIHSICD 514 (565)
Q Consensus 440 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~ 514 (565)
++|++|++++|.+..+|. ..+++|+.|++++|.+.+ +|. .+++|+.|++++|.+++.. +..
T Consensus 278 ----------~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~~---~~~ 343 (597)
T 3oja_B 278 ----------QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK---LST 343 (597)
T ss_dssp ----------SSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC---CCT
T ss_pred ----------cCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCCcC---hhh
Confidence 888888888888888743 557888888888888875 333 6788888888888887543 567
Q ss_pred CCCCCEEeCCCCcCccc
Q 037786 515 IIALDVLDLSNNRLSGT 531 (565)
Q Consensus 515 ~~~L~~L~l~~n~~~~~ 531 (565)
+++|+.|++++|++.|.
T Consensus 344 ~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 344 HHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp TCCCSEEECCSSCEEHH
T ss_pred cCCCCEEEeeCCCCCCh
Confidence 78888888888888764
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.96 E-value=7.7e-31 Score=268.11 Aligned_cols=376 Identities=19% Similarity=0.194 Sum_probs=177.6
Q ss_pred CCCcEEEccCCccCccCCcc-ccCCCCCCEEEcccccCccc----CchhccCCCCCCeeeccCCcccccCCcCc-cCCC-
Q 037786 83 SPLRCLDVSGTRFSGQLPDS-ICNLRHLRELHLSQCNFYGF----LPASLGNVTQLAVLSLSFKSFSGHIPPSL-SNLH- 155 (565)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~- 155 (565)
++|++|+++++.++...... +..+++|++|++++|.+... .+..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 45677777777765433222 55667777777777776542 24455666777777777776654322222 1222
Q ss_pred ---CCCEEEccCcccccc-----CcCCcCCCCCCEEeccCCcccccCCCC-----CcCCCCCCEEEcccccccCCC----
Q 037786 156 ---QLTDVDLGSNSFDGQ-----FPDIMNLTRISRLDISNNQLTGSIPSH-----GSGLQNLAVLRLYNNTLSGTI---- 218 (565)
Q Consensus 156 ---~L~~L~l~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~l~~~~---- 218 (565)
+|++|++++|.+... ...+..+++|++|++++|.+.+..+.. ....++|++|++++|.+....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 566666666665521 122555556666666665554321111 112334555555555544321
Q ss_pred chhhcCCCCCCEEEccCCcccccCCCCCCCCCcEEEccCCccccCCchhhh-----cCCCcCccccccccccCcc---Ch
Q 037786 219 PSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIF-----ELANLTYLSLASNNFSGIV---EP 290 (565)
Q Consensus 219 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~n~~~~~~---~~ 290 (565)
+..+..+++|++|++++|.+.+ .....+. ..++|++|++++|.+.... .+
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~----------------------~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 220 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINE----------------------AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 220 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHH----------------------HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHH
T ss_pred HHHHhhCCCCCEEECcCCCcch----------------------HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHH
Confidence 2223334444444444444332 1111111 1335555555555554321 12
Q ss_pred HhhhcCCCCCEEEccCCccccccCC----cccCCCCCccEEEcCCCCCCC-----CCchhhc-cccceEeccCCcCcccC
Q 037786 291 YMLAKLVNLAALELSHNSLSFGTTS----KVNSSFPQIFILSLSACNISA-----FPSFLRS-LELAYLDLSENNIDGQI 360 (565)
Q Consensus 291 ~~l~~~~~L~~L~l~~~~i~~~~~~----~~~~~~~~L~~L~l~~~~l~~-----l~~~~~~-~~L~~L~l~~n~l~~~~ 360 (565)
..+..+++|++|++++|.++..... .+...+++|+.|++++|.++. ++..+.. .+|++|++++|.+.+..
T Consensus 221 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 300 (461)
T 1z7x_W 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH
T ss_pred HHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHH
Confidence 3344556666666666655433221 111234555555555555543 2222221 24555555555444322
Q ss_pred ChhhhhhCCCCccEEEcCCCccCCccCCCCCCCCeEEcCCCcccccCC----C---CCCCCcEEEccccccCccchhhhh
Q 037786 361 PNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLP----V---PPPRLQFLLASNNQFTGEIIQSIC 433 (565)
Q Consensus 361 ~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~----~---~~~~L~~L~l~~n~i~~~~~~~l~ 433 (565)
+..+...- ....++|++|++++|.+.+... . .+++|++|++++|++++..+..++
T Consensus 301 ~~~l~~~l------------------~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 362 (461)
T 1z7x_W 301 ARLLCETL------------------LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 362 (461)
T ss_dssp HHHHHHHH------------------TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHH
T ss_pred HHHHHHHh------------------ccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHH
Confidence 22221100 0011345555555555443211 1 145666666666666555444444
Q ss_pred hcCCCCCCccccccCCCCCcEEeCcCCCCCC-----Ccc--cCCCcccEEECCCCccccc--------CCCCCCCCcEee
Q 037786 434 SSSTLEIPSWISEIGKDSLSYLNLSHNFITK-----MKQ--ISWKNLGYLDLRSNLLQGP--------LLVPPSSLRVIL 498 (565)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-----~~~--~~~~~L~~L~ls~n~l~~~--------~~~~~~~L~~L~ 498 (565)
..-. ...++|++|++++|.+++ ++. ..+++|+.|++++|.+++. ++....+|+.|+
T Consensus 363 ~~l~---------~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~ 433 (461)
T 1z7x_W 363 QGLG---------QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLV 433 (461)
T ss_dssp HHHT---------STTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEE
T ss_pred HHHc---------CCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhhee
Confidence 3100 001566666666666663 222 3456666666666665531 222334566666
Q ss_pred ccCceeeec
Q 037786 499 ILNNQFTGE 507 (565)
Q Consensus 499 l~~n~~~~~ 507 (565)
+.++.+...
T Consensus 434 ~~~~~~~~~ 442 (461)
T 1z7x_W 434 LYDIYWSEE 442 (461)
T ss_dssp CTTCCCCHH
T ss_pred ecccccCHH
Confidence 655555433
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-27 Score=229.61 Aligned_cols=289 Identities=19% Similarity=0.248 Sum_probs=153.0
Q ss_pred CCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCC-CCCCCCCCcEEE
Q 037786 11 KLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFP-RSNWTSPLRCLD 89 (565)
Q Consensus 11 ~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~ 89 (565)
+++.++++++.+...+. ..++++++|++++|.+++..+..+.++++|++|++++| .+.+..+ .+..+++|++|+
T Consensus 32 ~l~~l~~~~~~l~~lp~----~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPK----DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCCSCCC----SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEE
T ss_pred CCeEEEecCCCccccCc----cCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEE
Confidence 45666666666554432 12355666666666666555555666666666666666 3433322 233335666666
Q ss_pred ccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccc--cCCcCccCCCCCCEEEccCccc
Q 037786 90 VSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSG--HIPPSLSNLHQLTDVDLGSNSF 167 (565)
Q Consensus 90 l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~ 167 (565)
+++|.++ .+|..+. ++|++|++++|.+....+..|.++++|+.|++++|.+.. ..+..+..+++|+.|++++|.+
T Consensus 107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 107 LSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp CCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 6666555 3333332 456666666666555555555666666666666665542 3444555556666666665555
Q ss_pred cccCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCCCC
Q 037786 168 DGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPS 247 (565)
Q Consensus 168 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 247 (565)
...+..+. ++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 184 ~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N----------- 250 (330)
T 1xku_A 184 TTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN----------- 250 (330)
T ss_dssp CSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-----------
T ss_pred ccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-----------
Confidence 54333222 45555555555555444445555555555555555554433344444455555555544
Q ss_pred CCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhh------cCCCCCEEEccCCccccc-cCCcccCC
Q 037786 248 KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLA------KLVNLAALELSHNSLSFG-TTSKVNSS 320 (565)
Q Consensus 248 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~------~~~~L~~L~l~~~~i~~~-~~~~~~~~ 320 (565)
.++ .+|..+..+++|++|++++|.+... +...+. ..+.++.+++++|++... .....+..
T Consensus 251 -----------~l~-~lp~~l~~l~~L~~L~l~~N~i~~~-~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~ 317 (330)
T 1xku_A 251 -----------KLV-KVPGGLADHKYIQVVYLHNNNISAI-GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 317 (330)
T ss_dssp -----------CCS-SCCTTTTTCSSCCEEECCSSCCCCC-CTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTT
T ss_pred -----------cCc-cCChhhccCCCcCEEECCCCcCCcc-ChhhcCCcccccccccccceEeecCcccccccCcccccc
Confidence 444 4444455555666666666655533 222222 235677777777776532 22233466
Q ss_pred CCCccEEEcCCCC
Q 037786 321 FPQIFILSLSACN 333 (565)
Q Consensus 321 ~~~L~~L~l~~~~ 333 (565)
+..++.+++++|+
T Consensus 318 ~~~l~~l~L~~N~ 330 (330)
T 1xku_A 318 VYVRAAVQLGNYK 330 (330)
T ss_dssp CCCGGGEEC----
T ss_pred ccceeEEEecccC
Confidence 6777777777763
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-27 Score=228.64 Aligned_cols=247 Identities=23% Similarity=0.255 Sum_probs=156.1
Q ss_pred CCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEcc
Q 037786 84 PLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLG 163 (565)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 163 (565)
+++.++++++.++ .+|..+ .+++++|++++|.++...+..|.++++|++|++++|.+.+..|.++..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 4555555555555 344333 2456666666666665555556666666666666666665556666666666666666
Q ss_pred CccccccCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccC--CCchhhcCCCCCCEEEccCCccccc
Q 037786 164 SNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSG--TIPSWLFTLPLLRDIDLSDNQLTGH 241 (565)
Q Consensus 164 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~l~~~~~L~~L~l~~~~~~~~ 241 (565)
+|.+......+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.+...
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred CCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence 666654433332 566667776666665555556666777777777776642 3455666777777777777777644
Q ss_pred CCCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCC
Q 037786 242 LDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSF 321 (565)
Q Consensus 242 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~ 321 (565)
.... .++|++|++++|.+++..+..+..+++|+.|++++|.+... ++..+..+++|++|++++|.++. .+.. ...+
T Consensus 187 ~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~-lp~~-l~~l 262 (330)
T 1xku_A 187 PQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV-DNGSLANTPHLRELHLNNNKLVK-VPGG-LADH 262 (330)
T ss_dssp CSSC-CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE-CTTTGGGSTTCCEEECCSSCCSS-CCTT-TTTC
T ss_pred Cccc-cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee-ChhhccCCCCCCEEECCCCcCcc-CChh-hccC
Confidence 3332 26777788887777766666777777888888888777644 33456777777777777777762 2222 3566
Q ss_pred CCccEEEcCCCCCCCCCc
Q 037786 322 PQIFILSLSACNISAFPS 339 (565)
Q Consensus 322 ~~L~~L~l~~~~l~~l~~ 339 (565)
++|+.|++++|+++.++.
T Consensus 263 ~~L~~L~l~~N~i~~~~~ 280 (330)
T 1xku_A 263 KYIQVVYLHNNNISAIGS 280 (330)
T ss_dssp SSCCEEECCSSCCCCCCT
T ss_pred CCcCEEECCCCcCCccCh
Confidence 777777777777765553
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-27 Score=230.55 Aligned_cols=285 Identities=20% Similarity=0.273 Sum_probs=157.3
Q ss_pred CccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCC-CCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEc
Q 037786 36 SLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFP-RSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHL 114 (565)
Q Consensus 36 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 114 (565)
++++++++++.++ .+|..+. ++|++|++++| .+....+ .+..+++|++|++++|.+++..|..|.++++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 4555555555554 3343332 45555555555 3333322 2333355556666666555555555666666666666
Q ss_pred ccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccc--cCcC-CcCCCCCCEEeccCCccc
Q 037786 115 SQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDG--QFPD-IMNLTRISRLDISNNQLT 191 (565)
Q Consensus 115 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~-~~~~~~L~~L~l~~~~~~ 191 (565)
++|.++.. |..+. ++|++|++++|.+....+..+..+++|+.|++++|.+.. ..+. +..+ +|+.|++++|.++
T Consensus 110 ~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLVEI-PPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCCSC-CSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCCcc-Ccccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 66665532 22222 566666666666654444455666666666666665542 2222 4444 5666666666655
Q ss_pred ccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCC--CCCCCCcEEEccCCccccCCchhhh
Q 037786 192 GSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDA--FPSKSLRKLYLTNNRLHGSIPSSIF 269 (565)
Q Consensus 192 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~ 269 (565)
+ +|..+. ++|++|++++|.+....+..+..+++|+.|++++|.+.+..+. ...++|++|++++|.++ .+|..+.
T Consensus 186 ~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 261 (332)
T 2ft3_A 186 G-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP 261 (332)
T ss_dssp S-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG
T ss_pred c-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh
Confidence 3 333222 4666666666666555555566666666666666666554432 24456666666666666 5566666
Q ss_pred cCCCcCccccccccccCccChHhhhc------CCCCCEEEccCCcccc-ccCCcccCCCCCccEEEcCCCC
Q 037786 270 ELANLTYLSLASNNFSGIVEPYMLAK------LVNLAALELSHNSLSF-GTTSKVNSSFPQIFILSLSACN 333 (565)
Q Consensus 270 ~~~~L~~L~l~~n~~~~~~~~~~l~~------~~~L~~L~l~~~~i~~-~~~~~~~~~~~~L~~L~l~~~~ 333 (565)
.+++|+.|++++|.+... +...+.. .+.|+.+++++|++.. ......+..++.|+.+++++|+
T Consensus 262 ~l~~L~~L~l~~N~l~~~-~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 262 DLKLLQVVYLHTNNITKV-GVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GCTTCCEEECCSSCCCBC-CTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cCccCCEEECCCCCCCcc-ChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 777777777777777643 2233332 3567788888887652 2223334667778888877764
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-27 Score=228.67 Aligned_cols=245 Identities=22% Similarity=0.267 Sum_probs=139.2
Q ss_pred CCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEcc
Q 037786 84 PLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLG 163 (565)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 163 (565)
+++.++++++.++ .+|..+ .+++++|++++|.+....+..|.++++|++|++++|.+++..+.++..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 3444555555544 334333 2455555555555555545555555555555555555555445555555555555555
Q ss_pred CccccccCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccC--CCchhhcCCCCCCEEEccCCccccc
Q 037786 164 SNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSG--TIPSWLFTLPLLRDIDLSDNQLTGH 241 (565)
Q Consensus 164 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~l~~~~~L~~L~l~~~~~~~~ 241 (565)
+|.+...+..+. ++|++|++++|.+....+..+..+++|++|++++|.+.. ..+..+..+ +|+.|++++|.+...
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI 187 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred CCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence 555554333332 556666666665554444445556666666666665532 334444444 666666666666543
Q ss_pred CCCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCC
Q 037786 242 LDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSF 321 (565)
Q Consensus 242 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~ 321 (565)
.... .++|++|++++|.+++..+..+..+++|+.|++++|.+... ++..+..+++|++|++++|.++. .+.. ...+
T Consensus 188 ~~~~-~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~-lp~~-l~~l 263 (332)
T 2ft3_A 188 PKDL-PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI-ENGSLSFLPTLRELHLDNNKLSR-VPAG-LPDL 263 (332)
T ss_dssp CSSS-CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC-CTTGGGGCTTCCEEECCSSCCCB-CCTT-GGGC
T ss_pred Cccc-cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC-ChhHhhCCCCCCEEECCCCcCee-cChh-hhcC
Confidence 3222 25677777777777655556666777777777777777643 33456667777777777776652 2222 2556
Q ss_pred CCccEEEcCCCCCCCCC
Q 037786 322 PQIFILSLSACNISAFP 338 (565)
Q Consensus 322 ~~L~~L~l~~~~l~~l~ 338 (565)
++|+.|++++|+++.++
T Consensus 264 ~~L~~L~l~~N~l~~~~ 280 (332)
T 2ft3_A 264 KLLQVVYLHTNNITKVG 280 (332)
T ss_dssp TTCCEEECCSSCCCBCC
T ss_pred ccCCEEECCCCCCCccC
Confidence 66666666666666544
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.95 E-value=8.7e-31 Score=267.75 Aligned_cols=374 Identities=19% Similarity=0.170 Sum_probs=209.1
Q ss_pred CCCCcEEEcCCCcCCCCCchh-hhhcCCCccEEEccCCccccc----CCccccCCCCCCEEecCCCCCCCcc-CCC----
Q 037786 9 VTKLQLLFLDYVDMSTVVPGT-LKNLSSSLTSLSLSYCRIQGE----FPENIFRLSNLQMVRLKFNSNLSGV-FPR---- 78 (565)
Q Consensus 9 ~~~L~~L~l~~~~~~~~~~~~-~~~l~~~L~~L~l~~~~i~~~----~~~~~~~l~~L~~L~L~~~~~~~~~-~~~---- 78 (565)
.+++++|+++++++.+..... +..+ ++|++|++++|.++.. ++..+..+++|++|++++| .+.+. ...
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~-~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~ 79 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLL-QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQG 79 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHH-TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHT
T ss_pred CccceehhhhhcccCchhHHHHHhhc-CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHH
Confidence 357899999999988766555 6666 8999999999998743 4567788899999999988 34321 111
Q ss_pred CCCC-CCCcEEEccCCccCc----cCCccccCCCCCCEEEcccccCcccCchhcc-----CCCCCCeeeccCCccccc--
Q 037786 79 SNWT-SPLRCLDVSGTRFSG----QLPDSICNLRHLRELHLSQCNFYGFLPASLG-----NVTQLAVLSLSFKSFSGH-- 146 (565)
Q Consensus 79 ~~~~-~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~-- 146 (565)
.... ++|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++.
T Consensus 80 l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 80 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred HhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence 1111 267888888777763 3466677777788888877776654343332 245677777777766642
Q ss_pred --CCcCccCCCCCCEEEccCccccccCcC-Cc-----CCCCCCEEeccCCccccc----CCCCCcCCCCCCEEEcccccc
Q 037786 147 --IPPSLSNLHQLTDVDLGSNSFDGQFPD-IM-----NLTRISRLDISNNQLTGS----IPSHGSGLQNLAVLRLYNNTL 214 (565)
Q Consensus 147 --~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~-----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l 214 (565)
++..+..+++|++|++++|.+...... +. ..++|+.|++++|.++.. ++..+..+++|++|++++|.+
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 239 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC
Confidence 234445566777777776665432111 11 234555555555554431 122333444555555555544
Q ss_pred cCCCchhhcCCCCCCEEEccCCcccccCCCCCCCCCcEEEccCCccccC----CchhhhcCCCcCccccccccccCccCh
Q 037786 215 SGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGS----IPSSIFELANLTYLSLASNNFSGIVEP 290 (565)
Q Consensus 215 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~ 290 (565)
.......+. .......++|++|++++|.+++. ++..+..+++|++|++++|.+.+...
T Consensus 240 ~~~~~~~l~-----------------~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~- 301 (461)
T 1z7x_W 240 GDVGMAELC-----------------PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA- 301 (461)
T ss_dssp HHHHHHHHH-----------------HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH-
T ss_pred ChHHHHHHH-----------------HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH-
Confidence 321110000 00001234455555555555432 34445556666666666666543211
Q ss_pred Hhhh-----cCCCCCEEEccCCccccccCCc---ccCCCCCccEEEcCCCCCCCCC-----chhh--ccccceEeccCCc
Q 037786 291 YMLA-----KLVNLAALELSHNSLSFGTTSK---VNSSFPQIFILSLSACNISAFP-----SFLR--SLELAYLDLSENN 355 (565)
Q Consensus 291 ~~l~-----~~~~L~~L~l~~~~i~~~~~~~---~~~~~~~L~~L~l~~~~l~~l~-----~~~~--~~~L~~L~l~~n~ 355 (565)
..+. ..++|++|++++|.++...... ....+++|+.|++++|.++... ..+. ..+|++|++++|.
T Consensus 302 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 1111 1246666666666665432211 1234466666666666665221 1111 2267777777776
Q ss_pred Ccc----cCChhhhhhCCCCccEEEcCCCccCCccC--------CCCCCCCeEEcCCCccc
Q 037786 356 IDG----QIPNWMWEVGKDTLSFLDLSHNFITEMKQ--------IPWKNLKYLKLQSNLLQ 404 (565)
Q Consensus 356 l~~----~~~~~~~~~~~~~L~~L~ls~n~l~~~~~--------~~~~~L~~L~l~~n~~~ 404 (565)
+++ .++..+. .+++|++|++++|+++.... ....+|+.|++.++.+.
T Consensus 382 i~~~~~~~l~~~l~--~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 382 VSDSSCSSLAATLL--ANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp CCHHHHHHHHHHHH--HCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred CChhhHHHHHHHHH--hCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 664 3444443 35677777777777665533 12345777777666554
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.7e-30 Score=269.30 Aligned_cols=339 Identities=14% Similarity=0.058 Sum_probs=164.9
Q ss_pred CCCCCCEEEcccccCcccC----chhccCCCCCCeeeccCCccc----ccCCcCccCCCCCCEEEccCccccccCcCCcC
Q 037786 105 NLRHLRELHLSQCNFYGFL----PASLGNVTQLAVLSLSFKSFS----GHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMN 176 (565)
Q Consensus 105 ~l~~L~~L~L~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 176 (565)
.+++|++|++++|.+.+.. +..+..+++|+.|+++++.++ ..++..+..+++|+.|++++|.+.+....+..
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~ 241 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKA 241 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhh
Confidence 5566666666666554332 223345566666666666554 12223344556666666666665544433555
Q ss_pred CCCCCEEeccCCccc---ccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCC---CCCCCCC
Q 037786 177 LTRISRLDISNNQLT---GSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLD---AFPSKSL 250 (565)
Q Consensus 177 ~~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~L 250 (565)
+++|+++++++.... ......+..+++|+.++++++... ..+..+..+++|++|++++|.+.+... ...+++|
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence 666666666542211 122234455566666666654322 344455556666666666666432211 1234555
Q ss_pred cEEEccCCcccc-CCchhhhcCCCcCcccccc-----------ccccCccChHhhhcCCCCCEEEccCCccccccCCccc
Q 037786 251 RKLYLTNNRLHG-SIPSSIFELANLTYLSLAS-----------NNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVN 318 (565)
Q Consensus 251 ~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~-----------n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~ 318 (565)
++|++.+ .+.+ ..+.....+++|++|++++ +.++..........+++|++|+++.+.+++.....+.
T Consensus 321 ~~L~L~~-~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~ 399 (592)
T 3ogk_B 321 EVLETRN-VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG 399 (592)
T ss_dssp CEEEEEG-GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH
T ss_pred CEEeccC-ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH
Confidence 5555552 2221 1222334556666666662 3333222222334566666666666665554444443
Q ss_pred CCCCCccEEEcC----CCCCCCCC------chhh-ccccceEeccCCc--CcccCChhhhhhCCCCccEEEcCCCccCCc
Q 037786 319 SSFPQIFILSLS----ACNISAFP------SFLR-SLELAYLDLSENN--IDGQIPNWMWEVGKDTLSFLDLSHNFITEM 385 (565)
Q Consensus 319 ~~~~~L~~L~l~----~~~l~~l~------~~~~-~~~L~~L~l~~n~--l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ 385 (565)
..+++|+.|+++ .+.++..| .... ..+|+.|++++|. +++.....+..
T Consensus 400 ~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~------------------- 460 (592)
T 3ogk_B 400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ------------------- 460 (592)
T ss_dssp HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH-------------------
T ss_pred hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH-------------------
Confidence 335566666664 33343321 1111 1245555554322 33222222221
Q ss_pred cCCCCCCCCeEEcCCCcccccC----CCCCCCCcEEEccccccCccchhhh-hhcCCCCCCccccccCCCCCcEEeCcCC
Q 037786 386 KQIPWKNLKYLKLQSNLLQGPL----PVPPPRLQFLLASNNQFTGEIIQSI-CSSSTLEIPSWISEIGKDSLSYLNLSHN 460 (565)
Q Consensus 386 ~~~~~~~L~~L~l~~n~~~~~~----~~~~~~L~~L~l~~n~i~~~~~~~l-~~~~~~~~~~~~~~~~~~~L~~L~l~~n 460 (565)
.+++|++|++++|++++.. ...+++|++|++++|.+++.....+ ..+ ++|++|++++|
T Consensus 461 ---~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l--------------~~L~~L~ls~n 523 (592)
T 3ogk_B 461 ---YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKL--------------PSLRYLWVQGY 523 (592)
T ss_dssp ---SCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHC--------------SSCCEEEEESC
T ss_pred ---hCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhc--------------CccCeeECcCC
Confidence 2445555555555544311 1235666666666666554433332 344 66666666666
Q ss_pred CCCCCcc----cCCCcccEEECCCC
Q 037786 461 FITKMKQ----ISWKNLGYLDLRSN 481 (565)
Q Consensus 461 ~l~~~~~----~~~~~L~~L~ls~n 481 (565)
++++... ..+|.+....+..+
T Consensus 524 ~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 524 RASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp BCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred cCCHHHHHHHHHhCCCcEEEEecCc
Confidence 6655411 34555555444443
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-27 Score=230.16 Aligned_cols=247 Identities=28% Similarity=0.432 Sum_probs=142.8
Q ss_pred CccEEEccCCcccc--cCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEEE
Q 037786 36 SLTSLSLSYCRIQG--EFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELH 113 (565)
Q Consensus 36 ~L~~L~l~~~~i~~--~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 113 (565)
++++|+++++.+++ ..|..+.++++|++|++++ .+.+.+.+|..|.++++|++|+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~-----------------------~n~l~~~~p~~l~~l~~L~~L~ 107 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGG-----------------------INNLVGPIPPAIAKLTQLHYLY 107 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEE-----------------------ETTEESCCCGGGGGCTTCSEEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCC-----------------------CCcccccCChhHhcCCCCCEEE
Confidence 45555555555554 4555555555555555542 1444445555666666666666
Q ss_pred cccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCc-CCcCCC-CCCEEeccCCccc
Q 037786 114 LSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFP-DIMNLT-RISRLDISNNQLT 191 (565)
Q Consensus 114 L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~-~L~~L~l~~~~~~ 191 (565)
+++|.+++..|..|.++++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..+ .+..++ .|+.|++++|.+.
T Consensus 108 Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~ 187 (313)
T 1ogq_A 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp EEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred CcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee
Confidence 66666655556666666666666666666665566666666666666666666653333 355555 6666666666666
Q ss_pred ccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCC-CCCCCcEEEccCCccccCCchhhhc
Q 037786 192 GSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF-PSKSLRKLYLTNNRLHGSIPSSIFE 270 (565)
Q Consensus 192 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~ 270 (565)
+..+..+..++ |+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+.. ..++|++|++++|.+++..|..+..
T Consensus 188 ~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~ 266 (313)
T 1ogq_A 188 GKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266 (313)
T ss_dssp EECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGG
T ss_pred ccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhc
Confidence 55555555554 666666666666555566666666666666666665333222 3455666666666655555555666
Q ss_pred CCCcCccccccccccCccChHhhhcCCCCCEEEccCCc
Q 037786 271 LANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNS 308 (565)
Q Consensus 271 ~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~ 308 (565)
+++|+.|++++|.+.+.++. ...+++|+.+++++|+
T Consensus 267 l~~L~~L~Ls~N~l~~~ip~--~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 267 LKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNK 302 (313)
T ss_dssp CTTCCEEECCSSEEEEECCC--STTGGGSCGGGTCSSS
T ss_pred CcCCCEEECcCCcccccCCC--CccccccChHHhcCCC
Confidence 66666666666665544432 1445555555555554
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-27 Score=228.15 Aligned_cols=248 Identities=28% Similarity=0.420 Sum_probs=167.7
Q ss_pred CCCcEEEcCCCcCCC--CCchhhhhcCCCccEEEccC-CcccccCCccccCCCCCCEEecCCCCCCCccCCC-CCCCCCC
Q 037786 10 TKLQLLFLDYVDMST--VVPGTLKNLSSSLTSLSLSY-CRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPR-SNWTSPL 85 (565)
Q Consensus 10 ~~L~~L~l~~~~~~~--~~~~~~~~l~~~L~~L~l~~-~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~-~~~~~~L 85 (565)
.++++|+++++.+.+ ..+..+..+ ++|++|++++ |.+.+..|..+.++++|++|++++| .+.+..+. +...++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l-~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANL-PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT-NVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGC-TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE-CCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCC-CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCC-eeCCcCCHHHhCCCCC
Confidence 589999999999998 778899998 9999999995 8898889999999999999999887 44433333 3334666
Q ss_pred cEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCC-CCCeeeccCCcccccCCcCccCCCCCCEEEccC
Q 037786 86 RCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVT-QLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGS 164 (565)
Q Consensus 86 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (565)
++|++++|.+++.+|..|..+++|++|++++|.+++..|..+..++ +|+.|++++|.+.+..|..+..++ |+.|++++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence 6666666666666666666666666666666666656666666665 666666666666666666666655 66666666
Q ss_pred ccccccCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCC
Q 037786 165 NSFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLD 243 (565)
Q Consensus 165 ~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 243 (565)
|.+.+..+. +..+++|+.|++++|.+.+..+. +..+++|++|++++|.+.+..+..+..+++|+.|++++|++.
T Consensus 207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~---- 281 (313)
T 1ogq_A 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC---- 281 (313)
T ss_dssp SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE----
T ss_pred CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc----
Confidence 666544443 55666666666666666544333 455566666666666665555555555555555555555554
Q ss_pred CCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccc
Q 037786 244 AFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNF 284 (565)
Q Consensus 244 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 284 (565)
+.+|.. ..+++|+.+++++|+.
T Consensus 282 ------------------~~ip~~-~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 282 ------------------GEIPQG-GNLQRFDVSAYANNKC 303 (313)
T ss_dssp ------------------EECCCS-TTGGGSCGGGTCSSSE
T ss_pred ------------------ccCCCC-ccccccChHHhcCCCC
Confidence 344443 4566777777777763
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.1e-29 Score=262.39 Aligned_cols=416 Identities=14% Similarity=0.100 Sum_probs=275.8
Q ss_pred hHHHhhCCCCCcEEEcCCCcC-C----------CCC---chhhh-hcCCCccEEEccCCcccccCCccccC-CCC-CCEE
Q 037786 2 MEALVQNVTKLQLLFLDYVDM-S----------TVV---PGTLK-NLSSSLTSLSLSYCRIQGEFPENIFR-LSN-LQMV 64 (565)
Q Consensus 2 ~~~~~~~~~~L~~L~l~~~~~-~----------~~~---~~~~~-~l~~~L~~L~l~~~~i~~~~~~~~~~-l~~-L~~L 64 (565)
.+.+++++++|++|+++++.. . ... ...+. .+ ++|++|++++|.+++..+..+.. ++. |++|
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNL-RQLKSVHFRRMIVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHC-TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhC-CCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence 467888999999999987532 1 111 11222 44 88999999999887666666655 444 9999
Q ss_pred ecCCCCCCCc-cCCC-CCCCCCCcEEEccCCccCcc----CCccccCCCCCCEEEcccccCcc----cCchhccCCCCCC
Q 037786 65 RLKFNSNLSG-VFPR-SNWTSPLRCLDVSGTRFSGQ----LPDSICNLRHLRELHLSQCNFYG----FLPASLGNVTQLA 134 (565)
Q Consensus 65 ~L~~~~~~~~-~~~~-~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~~~~~~----~~~~~~~~l~~L~ 134 (565)
++++|..... .+.. ...+++|++|++++|.+++. ++..+..+++|++|++++|.+.+ ..+..+.++++|+
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~ 223 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc
Confidence 9998842211 1111 12448899999999987654 23345678899999999988763 3344456789999
Q ss_pred eeeccCCcccccCCcCccCCCCCCEEEccCcccc----ccCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcc
Q 037786 135 VLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFD----GQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLY 210 (565)
Q Consensus 135 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 210 (565)
.|++++|.+.+ ++..+..+++|+.|++++.... .....+..+++|+.++++++... ..+..+..+++|++|+++
T Consensus 224 ~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls 301 (592)
T 3ogk_B 224 SVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLL 301 (592)
T ss_dssp EEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEET
T ss_pred EEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecC
Confidence 99999988774 5677888899999999864322 12223777888999988875433 456667778899999999
Q ss_pred cccccCCCc-hhhcCCCCCCEEEccCCccccc-CCC--CCCCCCcEEEccC-----------CccccCC-chhhhcCCCc
Q 037786 211 NNTLSGTIP-SWLFTLPLLRDIDLSDNQLTGH-LDA--FPSKSLRKLYLTN-----------NRLHGSI-PSSIFELANL 274 (565)
Q Consensus 211 ~~~l~~~~~-~~l~~~~~L~~L~l~~~~~~~~-~~~--~~~~~L~~L~l~~-----------~~~~~~~-~~~~~~~~~L 274 (565)
+|.+..... ..+..+++|+.|++. +.+.+. ... ..+++|++|++++ +.+++.. ......+++|
T Consensus 302 ~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L 380 (592)
T 3ogk_B 302 YALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQEL 380 (592)
T ss_dssp TCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTC
T ss_pred CCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccC
Confidence 988653322 346788999999988 333321 111 1457799999983 4554332 2234458899
Q ss_pred CccccccccccCccChHhhhcCCCCCEEEcc----CCccccc----cCCcccCCCCCccEEEcCCCC--CC--CCCchhh
Q 037786 275 TYLSLASNNFSGIVEPYMLAKLVNLAALELS----HNSLSFG----TTSKVNSSFPQIFILSLSACN--IS--AFPSFLR 342 (565)
Q Consensus 275 ~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~----~~~i~~~----~~~~~~~~~~~L~~L~l~~~~--l~--~l~~~~~ 342 (565)
++|+++.+.+++.........+++|+.|+++ .+.+++. ....+...+++|+.|++++|. ++ .+.....
T Consensus 381 ~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~ 460 (592)
T 3ogk_B 381 EYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ 460 (592)
T ss_dssp SEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH
T ss_pred eEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH
Confidence 9999987777655333333348899999996 4455542 122223568889999997654 44 1222222
Q ss_pred -ccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccC----CCCCCCCeEEcCCCcccccCCC----CCCC
Q 037786 343 -SLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQ----IPWKNLKYLKLQSNLLQGPLPV----PPPR 413 (565)
Q Consensus 343 -~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~----~~~~~L~~L~l~~n~~~~~~~~----~~~~ 413 (565)
..+|++|++++|++++.....+.. ++++|+.|++++|.++.... ..+++|++|++++|+++..... .+|.
T Consensus 461 ~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~ 539 (592)
T 3ogk_B 461 YSPNVRWMLLGYVGESDEGLMEFSR-GCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPY 539 (592)
T ss_dssp SCTTCCEEEECSCCSSHHHHHHHHT-CCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTT
T ss_pred hCccceEeeccCCCCCHHHHHHHHh-cCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCC
Confidence 237999999999887533333322 67889999999998764322 2578999999999998765332 3666
Q ss_pred CcEEEcccc
Q 037786 414 LQFLLASNN 422 (565)
Q Consensus 414 L~~L~l~~n 422 (565)
+....+..+
T Consensus 540 l~~~~~~~~ 548 (592)
T 3ogk_B 540 WNIELIPSR 548 (592)
T ss_dssp EEEEEECCC
T ss_pred cEEEEecCc
Confidence 666555443
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.1e-26 Score=235.08 Aligned_cols=265 Identities=23% Similarity=0.268 Sum_probs=173.5
Q ss_pred CCCEEEccCCcccccCCCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccC
Q 037786 227 LLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSH 306 (565)
Q Consensus 227 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~ 306 (565)
+++.|++++|.+...+.... ++|+.|++++|.++ .++. .+++|++|++++|.+... +. .+++|++|++++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~l-p~----~l~~L~~L~Ls~ 110 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSL-PV----LPPGLLELSIFS 110 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCC-CC----CCTTCCEEEECS
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcC-CC----CCCCCCEEECcC
Confidence 35555555555553322222 55566666666555 3333 345666666666666532 21 456677777777
Q ss_pred CccccccCCcccCCCCCccEEEcCCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCcc
Q 037786 307 NSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMK 386 (565)
Q Consensus 307 ~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~ 386 (565)
|.++.... .+++|+.|++++|+++.+|... .+|++|++++|.++ .+|. .+++|+.|++++|.++.++
T Consensus 111 N~l~~l~~-----~l~~L~~L~L~~N~l~~lp~~l--~~L~~L~Ls~N~l~-~l~~-----~~~~L~~L~L~~N~l~~l~ 177 (622)
T 3g06_A 111 NPLTHLPA-----LPSGLCKLWIFGNQLTSLPVLP--PGLQELSVSDNQLA-SLPA-----LPSELCKLWAYNNQLTSLP 177 (622)
T ss_dssp CCCCCCCC-----CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCS-CCCC-----CCTTCCEEECCSSCCSCCC
T ss_pred CcCCCCCC-----CCCCcCEEECCCCCCCcCCCCC--CCCCEEECcCCcCC-CcCC-----ccCCCCEEECCCCCCCCCc
Confidence 66654222 3566777777777777666532 46777777777776 3442 2466777777777777766
Q ss_pred CCCCCCCCeEEcCCCcccccCCCCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCc
Q 037786 387 QIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMK 466 (565)
Q Consensus 387 ~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 466 (565)
..+++|+.|++++|.+.+ +|..+++|+.|++++|.++... . .. ++|++|++++|.++.+|
T Consensus 178 -~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~-~---~~--------------~~L~~L~Ls~N~L~~lp 237 (622)
T 3g06_A 178 -MLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLP-A---LP--------------SGLKELIVSGNRLTSLP 237 (622)
T ss_dssp -CCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCC-C---CC--------------TTCCEEECCSSCCSCCC
T ss_pred -ccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccC-C---CC--------------CCCCEEEccCCccCcCC
Confidence 556778888888877764 4455677888888888776321 1 11 67888888888888776
Q ss_pred ccCCCcccEEECCCCcccccCCCCCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCCCC
Q 037786 467 QISWKNLGYLDLRSNLLQGPLLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIG 537 (565)
Q Consensus 467 ~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l~ 537 (565)
..+++|+.|++++|.++. +|..+++|+.|++++|.++ .+|..+..+++|+.|+|++|++.+..|..+.
T Consensus 238 -~~l~~L~~L~Ls~N~L~~-lp~~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 238 -VLPSELKELMVSGNRLTS-LPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp -CCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred -CCCCcCcEEECCCCCCCc-CCcccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 456788888888888775 5557788888888888887 5677788888888888888888766665543
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-25 Score=210.65 Aligned_cols=224 Identities=21% Similarity=0.207 Sum_probs=193.7
Q ss_pred CcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCC-CCCCCCCCcEEEc
Q 037786 12 LQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFP-RSNWTSPLRCLDV 90 (565)
Q Consensus 12 L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~l 90 (565)
-++++.+++.+..++. ..++++++|++++|.++...+..+..+++|++|++++| .+.+..+ .+..+++|++|++
T Consensus 13 ~~~~~c~~~~l~~ip~----~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l 87 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPV----GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDL 87 (285)
T ss_dssp SCEEECCSSCCSSCCT----TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEEC
T ss_pred CeEEEcCcCCcccCCc----CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeC
Confidence 3688999988887643 24589999999999999877788999999999999998 5555533 4455599999999
Q ss_pred cCCc-cCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccc
Q 037786 91 SGTR-FSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDG 169 (565)
Q Consensus 91 ~~~~-~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 169 (565)
++|. +....+..|..+++|++|++++|.+....+..|.++++|++|++++|.+....+..+..+++|+.|++++|.+..
T Consensus 88 ~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 88 SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp CSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence 9997 776668889999999999999999988888889999999999999999987766778899999999999999987
Q ss_pred cCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccc
Q 037786 170 QFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG 240 (565)
Q Consensus 170 ~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 240 (565)
..+. +..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++..
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 7765 8889999999999999998888889999999999999999987777778899999999999998874
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.4e-28 Score=254.75 Aligned_cols=394 Identities=12% Similarity=0.078 Sum_probs=186.3
Q ss_pred CCCcEEEccCCccCccCCcccc-CCCCCCEEEcccc-cCccc-CchhccCCCCCCeeeccCCcccccCCcCc----cCCC
Q 037786 83 SPLRCLDVSGTRFSGQLPDSIC-NLRHLRELHLSQC-NFYGF-LPASLGNVTQLAVLSLSFKSFSGHIPPSL----SNLH 155 (565)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~L~~~-~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~----~~l~ 155 (565)
++|++|++++|.+++..+..+. .+++|++|++++| .++.. .+..+.++++|++|++++|.+++..+..+ ..++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 5666666666666544444443 4666677776666 33322 22223356666666666666553332222 2455
Q ss_pred CCCEEEccCcc--ccc-cCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEccccc-------ccCCCchhhcC
Q 037786 156 QLTDVDLGSNS--FDG-QFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNT-------LSGTIPSWLFT 224 (565)
Q Consensus 156 ~L~~L~l~~~~--~~~-~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------l~~~~~~~l~~ 224 (565)
+|+.|++++|. +.. .... ...+++|+.|++++|......+..+..+++|+.|++..+. +. ..+..+..
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l~~ 263 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVALSG 263 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHHHT
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHHhc
Confidence 66666666654 110 0011 2334556666665552111233334445555555544332 11 11123344
Q ss_pred CCCCCEEEccCCcccccCCCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEc
Q 037786 225 LPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALEL 304 (565)
Q Consensus 225 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l 304 (565)
+++|+.+. .+.+... ..++..+..+++|++|++++|.+........+..+++|++|++
T Consensus 264 ~~~L~~Ls---------------------~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l 321 (594)
T 2p1m_B 264 CKELRCLS---------------------GFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV 321 (594)
T ss_dssp CTTCCEEE---------------------CCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEE
T ss_pred CCCccccc---------------------CCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeC
Confidence 45554441 1111111 1222233344555555555555432222222345555555555
Q ss_pred cCCccccccCCcccCCCCCccEEEcCCC---------CCC--CCCchhh-ccccceEeccCCcCcccCChhhhhhCCCCc
Q 037786 305 SHNSLSFGTTSKVNSSFPQIFILSLSAC---------NIS--AFPSFLR-SLELAYLDLSENNIDGQIPNWMWEVGKDTL 372 (565)
Q Consensus 305 ~~~~i~~~~~~~~~~~~~~L~~L~l~~~---------~l~--~l~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L 372 (565)
++| +.......+...+++|++|++.+| .++ .+..... ..+|+.|.+..+.+++.....+.. .+++|
T Consensus 322 ~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~-~~~~L 399 (594)
T 2p1m_B 322 LDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIAR-NRPNM 399 (594)
T ss_dssp EGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHH-HCTTC
T ss_pred cCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHh-hCCCc
Confidence 555 332222222233455555555221 222 1111111 225555555555554333222221 23455
Q ss_pred cEEEcC--C----CccCCccCCCCCCCCeEEcCCCcccccCCCCCCCCcEEEccccccCccchhhhhh-cCCCCCCcccc
Q 037786 373 SFLDLS--H----NFITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICS-SSTLEIPSWIS 445 (565)
Q Consensus 373 ~~L~ls--~----n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~-~~~~~~~~~~~ 445 (565)
+.|+++ + +.++..+.. ..+. .....+++|++|++++ .+++..+..+.. +
T Consensus 400 ~~L~L~~~~~~~~~~l~~~~~~------------~~~~-~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~---------- 455 (594)
T 2p1m_B 400 TRFRLCIIEPKAPDYLTLEPLD------------IGFG-AIVEHCKDLRRLSLSG-LLTDKVFEYIGTYA---------- 455 (594)
T ss_dssp CEEEEEESSTTCCCTTTCCCTH------------HHHH-HHHHHCTTCCEEECCS-SCCHHHHHHHHHHC----------
T ss_pred ceeEeecccCCCcccccCCchh------------hHHH-HHHhhCCCccEEeecC-cccHHHHHHHHHhc----------
Confidence 555554 1 222211100 0000 0011256677777765 566555555554 4
Q ss_pred ccCCCCCcEEeCcCCCCCCC-cc---cCCCcccEEECCCCcccccC----CCCCCCCcEeeccCceeeeccchhh-hcCC
Q 037786 446 EIGKDSLSYLNLSHNFITKM-KQ---ISWKNLGYLDLRSNLLQGPL----LVPPSSLRVILILNNQFTGEIIHSI-CDII 516 (565)
Q Consensus 446 ~~~~~~L~~L~l~~n~l~~~-~~---~~~~~L~~L~ls~n~l~~~~----~~~~~~L~~L~l~~n~~~~~~~~~l-~~~~ 516 (565)
++|++|++++|.+++. .. ..+++|+.|++++|.+++.. ...+++|++|++++|+++......+ ..++
T Consensus 456 ----~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp 531 (594)
T 2p1m_B 456 ----KKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMP 531 (594)
T ss_dssp ----TTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCT
T ss_pred ----hhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCC
Confidence 6777777777776555 21 44677777777777764321 1246778888888887765555545 5667
Q ss_pred CCCEEeCCCCcCc
Q 037786 517 ALDVLDLSNNRLS 529 (565)
Q Consensus 517 ~L~~L~l~~n~~~ 529 (565)
+|+...+..+...
T Consensus 532 ~l~i~~~~~~~~~ 544 (594)
T 2p1m_B 532 KLNVEVIDERGAP 544 (594)
T ss_dssp TEEEEEECSSSCG
T ss_pred CCEEEEecCCCcc
Confidence 7777777666543
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.6e-25 Score=215.99 Aligned_cols=275 Identities=16% Similarity=0.166 Sum_probs=168.6
Q ss_pred CCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCC-CCCCCCCCcEEEccCCccCccCCccccCCCCCCEEE
Q 037786 35 SSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFP-RSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELH 113 (565)
Q Consensus 35 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 113 (565)
+.....+.+++.++ .+|..+. ++|++|++++| .+.+..+ .+...++|++|++++|.+++..+..|.++++|++|+
T Consensus 31 ~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 31 DRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp CTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCeEeeCCCCCcc-ccccccc--ccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 33444666666665 3444333 36666666666 3443333 233346666666666776666666677777888888
Q ss_pred cccccCcccCchhccCCCCCCeeeccCCcccccCC-cCccCCCCCCEEEccCcc-ccccCcC-CcCCCCCCEEeccCCcc
Q 037786 114 LSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIP-PSLSNLHQLTDVDLGSNS-FDGQFPD-IMNLTRISRLDISNNQL 190 (565)
Q Consensus 114 L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~-~~~~~~~-~~~~~~L~~L~l~~~~~ 190 (565)
+++|.++...+..|.++++|++|++++|.+....+ ..+..+++|++|++++|. +....+. +..+++|++|++++|.+
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 88777776666667777788888888777774333 367777788888887773 5544443 77777788888888877
Q ss_pred cccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCC-----CCCCCcEEEccCCccccCCc
Q 037786 191 TGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF-----PSKSLRKLYLTNNRLHGSIP 265 (565)
Q Consensus 191 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~ 265 (565)
.+..+..+..+++|++|++++|.+.......+..+++|+.|++++|.+.+..... ....++.++++++.+.+
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~--- 263 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD--- 263 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH---
T ss_pred CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC---
Confidence 7777777777788888888887775433334455777777777777776432211 12233333333333322
Q ss_pred hhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCC
Q 037786 266 SSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNIS 335 (565)
Q Consensus 266 ~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~ 335 (565)
+.+.. + +..+..+++|++|++++|.++. .+..++..+++|+.|++++|++.
T Consensus 264 ----------------~~l~~-l-~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 264 ----------------ESLFQ-V-MKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp ----------------HHHHH-H-HHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBC
T ss_pred ----------------cchhh-h-HHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCcc
Confidence 11111 1 2345666667777777776662 23333356667777777777665
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-24 Score=208.92 Aligned_cols=244 Identities=22% Similarity=0.179 Sum_probs=191.3
Q ss_pred cEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCcc---CCCCCCCCCCcEEE
Q 037786 13 QLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGV---FPRSNWTSPLRCLD 89 (565)
Q Consensus 13 ~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~---~~~~~~~~~L~~L~ 89 (565)
+.++++++.+..++. ..++++++|++++|.++...+..+.++++|++|++++| .+... .......++|++|+
T Consensus 10 ~~l~c~~~~l~~ip~----~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLTSVPT----GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCSSCCS----CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEE
T ss_pred CEEEcCCCCcccCCC----CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEE
Confidence 578888888876654 23478999999999998655566889999999999988 44322 23333458899999
Q ss_pred ccCCccCccCCccccCCCCCCEEEcccccCcccCc-hhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCcccc
Q 037786 90 VSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLP-ASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFD 168 (565)
Q Consensus 90 l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 168 (565)
+++|.++ .+|..+..+++|++|++++|.+....+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp CCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred CCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc
Confidence 9999887 566778889999999999988876654 57888899999999999888777788888899999999998887
Q ss_pred c--cCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCC-
Q 037786 169 G--QFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF- 245 (565)
Q Consensus 169 ~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~- 245 (565)
+ .+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..
T Consensus 164 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 243 (306)
T 2z66_A 164 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 243 (306)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSC
T ss_pred cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHH
Confidence 5 3444888888999999998888777888888888999999998888666667788888888888888887654432
Q ss_pred -CC-CCCcEEEccCCcccc
Q 037786 246 -PS-KSLRKLYLTNNRLHG 262 (565)
Q Consensus 246 -~~-~~L~~L~l~~~~~~~ 262 (565)
.. ++|++|++++|.+++
T Consensus 244 ~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 244 QHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CCCCTTCCEEECTTCCEEC
T ss_pred HhhhccCCEEEccCCCeec
Confidence 22 467777777777664
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.3e-25 Score=212.50 Aligned_cols=216 Identities=18% Similarity=0.210 Sum_probs=158.1
Q ss_pred CCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCchhhcc-ccceEeccCCcCcccCChhhhhhCCCCccEE
Q 037786 297 VNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSL-ELAYLDLSENNIDGQIPNWMWEVGKDTLSFL 375 (565)
Q Consensus 297 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L 375 (565)
+.++.|++++|.++ ..+..+ ..+++|++|++++|.++.+|..+... +|++|++++|.++ .+|..+.
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l-~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~---------- 147 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQA-FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIA---------- 147 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCG-GGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGG----------
T ss_pred cceeEEEccCCCch-hcChhh-hhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHh----------
Confidence 45556666665554 222222 33555555555555555555433332 5555555555555 4444433
Q ss_pred EcCCCccCCccCCCCCCCCeEEcCCCcccccCCC------------CCCCCcEEEccccccCccchhhhhhcCCCCCCcc
Q 037786 376 DLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPV------------PPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSW 443 (565)
Q Consensus 376 ~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~------------~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~ 443 (565)
.+++|++|++++|.+.+..|. .+++|++|++++|+++ .+|..+..+
T Consensus 148 -------------~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l-------- 205 (328)
T 4fcg_A 148 -------------SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANL-------- 205 (328)
T ss_dssp -------------GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGC--------
T ss_pred -------------cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCC--------
Confidence 334444555544444443333 2789999999999998 677778888
Q ss_pred ccccCCCCCcEEeCcCCCCCCCcc--cCCCcccEEECCCCcccccCCC---CCCCCcEeeccCceeeeccchhhhcCCCC
Q 037786 444 ISEIGKDSLSYLNLSHNFITKMKQ--ISWKNLGYLDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEIIHSICDIIAL 518 (565)
Q Consensus 444 ~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~L 518 (565)
++|++|++++|.+..+|. ..+++|+.|++++|.+.+.+|. .+++|++|++++|.+.+.+|..+..+++|
T Consensus 206 ------~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L 279 (328)
T 4fcg_A 206 ------QNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQL 279 (328)
T ss_dssp ------TTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTC
T ss_pred ------CCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCC
Confidence 999999999999999854 7889999999999999887765 78999999999999999999999999999
Q ss_pred CEEeCCCCcCcccCCCCCCCCCCCcccccCCCCcc
Q 037786 519 DVLDLSNNRLSGTIPKCIGNFSPWCQTKWPSRWSA 553 (565)
Q Consensus 519 ~~L~l~~n~~~~~~p~~l~~l~~L~~l~~~~~~~~ 553 (565)
++|+|++|++.+.+|++++++++|+.+.+...+..
T Consensus 280 ~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 280 EKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 99999999999999999999999999998765443
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.1e-24 Score=220.50 Aligned_cols=261 Identities=23% Similarity=0.227 Sum_probs=221.2
Q ss_pred CCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEE
Q 037786 248 KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFIL 327 (565)
Q Consensus 248 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L 327 (565)
..++.++++++.++ .+|..+. ++|+.|++++|.+... +. .+++|++|++++|.++.... .+++|+.|
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~l-p~----~l~~L~~L~Ls~N~l~~lp~-----~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSL-PA----LPPELRTLEVSGNQLTSLPV-----LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCC-CC----CCTTCCEEEECSCCCSCCCC-----CCTTCCEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCC-CC----cCCCCCEEEcCCCcCCcCCC-----CCCCCCEE
Confidence 35899999999998 6666554 7999999999999843 32 57899999999999874322 67899999
Q ss_pred EcCCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCCCCCCCCeEEcCCCcccccC
Q 037786 328 SLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPL 407 (565)
Q Consensus 328 ~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~ 407 (565)
++++|.++.+|. ...+|+.|++++|+++ .+|. .+++|+.|++++|.++.++. .+++|+.|++++|.+.. +
T Consensus 107 ~Ls~N~l~~l~~--~l~~L~~L~L~~N~l~-~lp~-----~l~~L~~L~Ls~N~l~~l~~-~~~~L~~L~L~~N~l~~-l 176 (622)
T 3g06_A 107 SIFSNPLTHLPA--LPSGLCKLWIFGNQLT-SLPV-----LPPGLQELSVSDNQLASLPA-LPSELCKLWAYNNQLTS-L 176 (622)
T ss_dssp EECSCCCCCCCC--CCTTCCEEECCSSCCS-CCCC-----CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSC-C
T ss_pred ECcCCcCCCCCC--CCCCcCEEECCCCCCC-cCCC-----CCCCCCEEECcCCcCCCcCC-ccCCCCEEECCCCCCCC-C
Confidence 999999999887 3348999999999998 4664 34899999999999998765 56899999999999986 5
Q ss_pred CCCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcccCCCcccEEECCCCcccccC
Q 037786 408 PVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPL 487 (565)
Q Consensus 408 ~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~ls~n~l~~~~ 487 (565)
|..+++|++|++++|++++. +. .. ++|+.|++++|.+..+|. .+++|+.|++++|.+++ +
T Consensus 177 ~~~~~~L~~L~Ls~N~l~~l-~~---~~--------------~~L~~L~L~~N~l~~l~~-~~~~L~~L~Ls~N~L~~-l 236 (622)
T 3g06_A 177 PMLPSGLQELSVSDNQLASL-PT---LP--------------SELYKLWAYNNRLTSLPA-LPSGLKELIVSGNRLTS-L 236 (622)
T ss_dssp CCCCTTCCEEECCSSCCSCC-CC---CC--------------TTCCEEECCSSCCSSCCC-CCTTCCEEECCSSCCSC-C
T ss_pred cccCCCCcEEECCCCCCCCC-CC---cc--------------chhhEEECcCCcccccCC-CCCCCCEEEccCCccCc-C
Confidence 57799999999999999852 21 12 799999999999999874 46899999999999987 6
Q ss_pred CCCCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCCCCCCCCCcccccCCCCccccc
Q 037786 488 LVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSPWCQTKWPSRWSATTL 556 (565)
Q Consensus 488 ~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~l~~~~~~~~~~~ 556 (565)
+..+++|+.|++++|.++. +|. .+++|+.|+|++|.+. .+|+.++.+++|+.|++.+..+.+..
T Consensus 237 p~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 237 PVLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp CCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHH
T ss_pred CCCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcC
Confidence 6788999999999999984 444 6789999999999999 89999999999999999987765443
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.3e-25 Score=213.20 Aligned_cols=230 Identities=21% Similarity=0.251 Sum_probs=202.4
Q ss_pred CCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCccccc--CCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcE
Q 037786 10 TKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGE--FPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRC 87 (565)
Q Consensus 10 ~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~--~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~ 87 (565)
+++++|++++|.+..+....|..+ ++|++|++++|.++.. .+..+..+++|++|++++| ........+...++|++
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKL-TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTC-TTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCCE
T ss_pred CCCCEEECCCCccCccCHhHhhcc-ccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCCE
Confidence 589999999999998887778888 9999999999998743 2567778999999999999 55555455566799999
Q ss_pred EEccCCccCccCC-ccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccc-cCCcCccCCCCCCEEEccCc
Q 037786 88 LDVSGTRFSGQLP-DSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSG-HIPPSLSNLHQLTDVDLGSN 165 (565)
Q Consensus 88 L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~ 165 (565)
|++++|.+++..+ ..+..+++|++|++++|.+....+..+.++++|++|++++|.+.+ ..|..+..+++|+.|++++|
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence 9999999985544 578999999999999999998888899999999999999999986 57889999999999999999
Q ss_pred cccccCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCC-CCCEEEccCCccccc
Q 037786 166 SFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLP-LLRDIDLSDNQLTGH 241 (565)
Q Consensus 166 ~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~-~L~~L~l~~~~~~~~ 241 (565)
.+....+. +..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..++ +|+.|++++|++...
T Consensus 186 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 99887554 88999999999999999977777788999999999999999988888888884 999999999998753
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.3e-28 Score=254.82 Aligned_cols=407 Identities=12% Similarity=0.105 Sum_probs=168.9
Q ss_pred HHHhhCCCCCcEEEcCCCc-CCCCC-------------chhhhhcCCCccEEEccCCcccccCCcccc-CCCCCCEEecC
Q 037786 3 EALVQNVTKLQLLFLDYVD-MSTVV-------------PGTLKNLSSSLTSLSLSYCRIQGEFPENIF-RLSNLQMVRLK 67 (565)
Q Consensus 3 ~~~~~~~~~L~~L~l~~~~-~~~~~-------------~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~-~l~~L~~L~L~ 67 (565)
..++.++++|++|+++++. +.+.. ...+....++|++|++++|.+++..+..+. .+++|++|+++
T Consensus 59 ~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~ 138 (594)
T 2p1m_B 59 ATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLS 138 (594)
T ss_dssp HHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCC
Confidence 3456667777777777654 11111 011121226667777776666654444443 46666666666
Q ss_pred CCCCCCcc-CCCCC-CCCCCcEEEccCCccCccCCccc----cCCCCCCEEEccccc--Cccc-CchhccCCCCCCeeec
Q 037786 68 FNSNLSGV-FPRSN-WTSPLRCLDVSGTRFSGQLPDSI----CNLRHLRELHLSQCN--FYGF-LPASLGNVTQLAVLSL 138 (565)
Q Consensus 68 ~~~~~~~~-~~~~~-~~~~L~~L~l~~~~~~~~~~~~~----~~l~~L~~L~L~~~~--~~~~-~~~~~~~l~~L~~L~l 138 (565)
+|...... ++... .+++|++|++++|.+++..+..+ ..+++|++|++++|. +... ....+..+++|++|++
T Consensus 139 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L 218 (594)
T 2p1m_B 139 SCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218 (594)
T ss_dssp SCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEEC
T ss_pred CcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEec
Confidence 65221110 11111 23555555555555443222222 234455555555543 1111 1111123455555555
Q ss_pred cCCcccccCCcCccCCCCCCEEEccCccccccCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEE-EcccccccCC
Q 037786 139 SFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVL-RLYNNTLSGT 217 (565)
Q Consensus 139 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L-~l~~~~l~~~ 217 (565)
++|.....++..+..+++|+.|+++++... +..+.+.+ .+..+..+++|+.+ .+.+... ..
T Consensus 219 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~----------------~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~ 280 (594)
T 2p1m_B 219 NRAVPLEKLATLLQRAPQLEELGTGGYTAE----------------VRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AY 280 (594)
T ss_dssp CTTSCHHHHHHHHHHCTTCSEEECSBCCCC----------------CCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GG
T ss_pred CCCCcHHHHHHHHhcCCcceEcccccccCc----------------cchhhHHH-HHHHHhcCCCcccccCCcccch-hh
Confidence 554211123334444555555554333210 01111111 11133444555554 2222111 12
Q ss_pred CchhhcCCCCCCEEEccCCcccccCCC---CCCCCCcEEEccCCccccC-CchhhhcCCCcCcccccc---------ccc
Q 037786 218 IPSWLFTLPLLRDIDLSDNQLTGHLDA---FPSKSLRKLYLTNNRLHGS-IPSSIFELANLTYLSLAS---------NNF 284 (565)
Q Consensus 218 ~~~~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~---------n~~ 284 (565)
.+..+..+++|+.|++++|.+.+.... ..+++|++|++.+| +.+. .......+++|++|++.+ +.+
T Consensus 281 l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l 359 (594)
T 2p1m_B 281 LPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVAL 359 (594)
T ss_dssp GGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCC
T ss_pred HHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCC
Confidence 222333445555555555553321100 13344555555544 2211 111222355566655522 223
Q ss_pred cCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcC--C----CCCCCCCc------hhhc-cccceEec
Q 037786 285 SGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLS--A----CNISAFPS------FLRS-LELAYLDL 351 (565)
Q Consensus 285 ~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~--~----~~l~~l~~------~~~~-~~L~~L~l 351 (565)
++.........+++|+.|.+..+.++......+...+++|+.|+++ + +.++..+. .+.. .+|+.|++
T Consensus 360 ~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L 439 (594)
T 2p1m_B 360 TEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL 439 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEEC
T ss_pred CHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEee
Confidence 2221111223356666666555555544433333345566666665 2 23332211 1111 25555555
Q ss_pred cCCcCcccCChhhhhhCCCCccEEEcCCCccCCccC----CCCCCCCeEEcCCCcccccCC----CCCCCCcEEEccccc
Q 037786 352 SENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQ----IPWKNLKYLKLQSNLLQGPLP----VPPPRLQFLLASNNQ 423 (565)
Q Consensus 352 ~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~----~~~~~L~~L~l~~n~~~~~~~----~~~~~L~~L~l~~n~ 423 (565)
++ .+++.....+.. .+++|+.|++++|.+++... ..+++|++|++++|++++... ..+++|++|++++|+
T Consensus 440 ~~-~l~~~~~~~l~~-~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 440 SG-LLTDKVFEYIGT-YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp CS-SCCHHHHHHHHH-HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred cC-cccHHHHHHHHH-hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence 44 343333222222 23455555555555433322 124455555555554432111 124455555555555
Q ss_pred cCccchh
Q 037786 424 FTGEIIQ 430 (565)
Q Consensus 424 i~~~~~~ 430 (565)
++....+
T Consensus 518 ~~~~~~~ 524 (594)
T 2p1m_B 518 VSFGACK 524 (594)
T ss_dssp CBHHHHH
T ss_pred CCHHHHH
Confidence 5433333
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.92 E-value=4e-24 Score=206.85 Aligned_cols=224 Identities=21% Similarity=0.273 Sum_probs=130.7
Q ss_pred CCCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEE
Q 037786 9 VTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCL 88 (565)
Q Consensus 9 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L 88 (565)
.++++.|++++|.+..+ +..+..+ ++|++|++++|.++ .+|..+..+++|++|++++| .+......+..+++|++|
T Consensus 80 ~~~l~~L~L~~n~l~~l-p~~l~~l-~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQF-PDQAFRL-SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESSCCSSC-CSCGGGG-TTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEE
T ss_pred ccceeEEEccCCCchhc-ChhhhhC-CCCCEEECCCCCcc-chhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEE
Confidence 45666667766666643 3345555 66666777666666 56666666666666666666 343332233334666666
Q ss_pred EccCCccCccCCccccC---------CCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCE
Q 037786 89 DVSGTRFSGQLPDSICN---------LRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTD 159 (565)
Q Consensus 89 ~l~~~~~~~~~~~~~~~---------l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 159 (565)
++++|.+.+.+|..+.. +++|++|++++|.++ ..|..+.++++|++|++++|.+. .+|..+..+++|++
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~ 233 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEE 233 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCE
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCE
Confidence 66666555555554433 566666666666655 44555666666666666666655 24445556666666
Q ss_pred EEccCccccccCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcc
Q 037786 160 VDLGSNSFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQL 238 (565)
Q Consensus 160 L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~ 238 (565)
|++++|.+.+..+. +..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++++.+.+..+.+
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 66666555444433 55566666666666655555555566666666666666665555666666666666665554433
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=6e-26 Score=219.07 Aligned_cols=248 Identities=24% Similarity=0.206 Sum_probs=134.4
Q ss_pred EEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCC
Q 037786 253 LYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSAC 332 (565)
Q Consensus 253 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~ 332 (565)
.+++.+.+.......+..+++|++|++++|.+... .+..+..+++|++|++++|.++.... +..+++|+.|++++|
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNN 90 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCSS
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcCC
Confidence 34444444433333344456777777777777643 44566777777777777776654332 355566666666666
Q ss_pred CCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCCCCCCCCeEEcCCCcccccCCCC--
Q 037786 333 NISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVP-- 410 (565)
Q Consensus 333 ~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~-- 410 (565)
.++.++.. .+|++|++++|.+ +.++...+++|++|++++|++.+..+..
T Consensus 91 ~l~~l~~~---~~L~~L~l~~n~l--------------------------~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~ 141 (317)
T 3o53_A 91 YVQELLVG---PSIETLHAANNNI--------------------------SRVSCSRGQGKKNIYLANNKITMLRDLDEG 141 (317)
T ss_dssp EEEEEEEC---TTCCEEECCSSCC--------------------------SEEEECCCSSCEEEECCSSCCCSGGGBCTG
T ss_pred ccccccCC---CCcCEEECCCCcc--------------------------CCcCccccCCCCEEECCCCCCCCccchhhh
Confidence 65543321 2445555555544 4444444445555555555554432221
Q ss_pred -CCCCcEEEccccccCccchhhhh-hcCCCCCCccccccCCCCCcEEeCcCCCCCCCc-ccCCCcccEEECCCCcccccC
Q 037786 411 -PPRLQFLLASNNQFTGEIIQSIC-SSSTLEIPSWISEIGKDSLSYLNLSHNFITKMK-QISWKNLGYLDLRSNLLQGPL 487 (565)
Q Consensus 411 -~~~L~~L~l~~n~i~~~~~~~l~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~L~~L~ls~n~l~~~~ 487 (565)
+++|++|++++|++++..+..+. .+ ++|++|++++|.++.++ ...+++|+.|++++|.+++..
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l--------------~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~ 207 (317)
T 3o53_A 142 CRSRVQYLDLKLNEIDTVNFAELAASS--------------DTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMG 207 (317)
T ss_dssp GGSSEEEEECTTSCCCEEEGGGGGGGT--------------TTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEEC
T ss_pred ccCCCCEEECCCCCCCcccHHHHhhcc--------------CcCCEEECCCCcCcccccccccccCCEEECCCCcCCcch
Confidence 45556666666655554444442 33 56666666666666553 244556666666666655422
Q ss_pred CC--CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCc-ccCCCCCCCCCCCcccccC
Q 037786 488 LV--PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLS-GTIPKCIGNFSPWCQTKWP 548 (565)
Q Consensus 488 ~~--~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~-~~~p~~l~~l~~L~~l~~~ 548 (565)
+. .+++|+.|++++|.++. +|..+..+++|+.|++++|++. ..+|+.++.+++|+.+++.
T Consensus 208 ~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 208 PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred hhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 22 45666666666666653 3445566666666666666666 3455555555555555443
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-23 Score=212.49 Aligned_cols=246 Identities=20% Similarity=0.180 Sum_probs=169.8
Q ss_pred CcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccC
Q 037786 85 LRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGS 164 (565)
Q Consensus 85 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (565)
...++.++..++ .+|..+. +++++|++++|.++...+..|.++++|+.|++++|.+.+..+..|.++++|++|++++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 455666666666 4554442 5677777777777777777777777777777777777766667777777777777777
Q ss_pred ccccccCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccc-cccCCCchhhcCCCCCCEEEccCCcccccC
Q 037786 165 NSFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNN-TLSGTIPSWLFTLPLLRDIDLSDNQLTGHL 242 (565)
Q Consensus 165 ~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 242 (565)
|.+....+. +..+++|+.|++++|.+....+..+..+++|+.|+++++ .+....+..+..+++|+.|++++|.+.+..
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 212 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP 212 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc
Confidence 777766555 667777777777777777666667777777888888774 344334446777778888888888777655
Q ss_pred CCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCC
Q 037786 243 DAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFP 322 (565)
Q Consensus 243 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~ 322 (565)
.....++|++|++++|.+++..+..+..+++|+.|++++|.+... .+..+..+++|+.|++++|.++..... .+..++
T Consensus 213 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~ 290 (452)
T 3zyi_A 213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI-ERNAFDGLASLVELNLAHNNLSSLPHD-LFTPLR 290 (452)
T ss_dssp CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCSCCCTT-SSTTCT
T ss_pred cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceE-CHHHhcCCCCCCEEECCCCcCCccChH-Hhcccc
Confidence 445667777777777777766667777777777777777777643 335567777777777777777643332 335566
Q ss_pred CccEEEcCCCCCC
Q 037786 323 QIFILSLSACNIS 335 (565)
Q Consensus 323 ~L~~L~l~~~~l~ 335 (565)
+|+.|++++|.+.
T Consensus 291 ~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 291 YLVELHLHHNPWN 303 (452)
T ss_dssp TCCEEECCSSCEE
T ss_pred CCCEEEccCCCcC
Confidence 7777777776543
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-23 Score=211.64 Aligned_cols=245 Identities=20% Similarity=0.198 Sum_probs=146.3
Q ss_pred CcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccC
Q 037786 85 LRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGS 164 (565)
Q Consensus 85 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (565)
.+.++.++..++ .+|..+. ++++.|++++|.+....+..|.++++|++|++++|.+....+.+|.++++|++|++++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 345555555555 4444332 4566666666666655556666666666666666666655555666666666666666
Q ss_pred ccccccCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccc-cccCCCchhhcCCCCCCEEEccCCcccccC
Q 037786 165 NSFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNN-TLSGTIPSWLFTLPLLRDIDLSDNQLTGHL 242 (565)
Q Consensus 165 ~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 242 (565)
|.+....+. +..+++|+.|++++|.+....+..|..+++|++|+++++ .+....+..|..+++|+.|++++|.+....
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 201 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence 666555443 566666666666666666555556666666666666663 333233345666666677777666666544
Q ss_pred CCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCC
Q 037786 243 DAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFP 322 (565)
Q Consensus 243 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~ 322 (565)
.....++|++|++++|.+++..+..+..+++|+.|++++|.+... .+..+..+++|++|++++|.++..... .+..++
T Consensus 202 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~ 279 (440)
T 3zyj_A 202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI-ERNAFDNLQSLVEINLAHNNLTLLPHD-LFTPLH 279 (440)
T ss_dssp CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTSSTTCTTCCEEECTTSCCCCCCTT-TTSSCT
T ss_pred ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEE-ChhhhcCCCCCCEEECCCCCCCccChh-Hhcccc
Confidence 444556666666666666655556666666666666666666533 334556666666666666666543322 225556
Q ss_pred CccEEEcCCCCC
Q 037786 323 QIFILSLSACNI 334 (565)
Q Consensus 323 ~L~~L~l~~~~l 334 (565)
+|+.|++++|.+
T Consensus 280 ~L~~L~L~~Np~ 291 (440)
T 3zyj_A 280 HLERIHLHHNPW 291 (440)
T ss_dssp TCCEEECCSSCE
T ss_pred CCCEEEcCCCCc
Confidence 666666666654
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.4e-24 Score=210.38 Aligned_cols=279 Identities=16% Similarity=0.128 Sum_probs=167.5
Q ss_pred CCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeee
Q 037786 58 LSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLS 137 (565)
Q Consensus 58 l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 137 (565)
|+.....+.+++ .+....... .++|++|++++|.+++..+..|.++++|++|++++|.+++..+.+|.++++|++|+
T Consensus 30 C~~~~~c~~~~~-~l~~iP~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSG-SLNSIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCST-TCSSCCTTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCC-Ccccccccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 444445555554 333222211 14666666666666654444566666666666666666665566666666666666
Q ss_pred ccCCcccccCCcCccCCCCCCEEEccCccccccCc--CCcCCCCCCEEeccCC-cccccCCCCCcCCCCCCEEEcccccc
Q 037786 138 LSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFP--DIMNLTRISRLDISNN-QLTGSIPSHGSGLQNLAVLRLYNNTL 214 (565)
Q Consensus 138 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~l 214 (565)
+++|.+++..+..+..+++|++|++++|.+..... .+..+++|+.|++++| .+....+..+..+++|++|++++|.+
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 66666664333346666666666666666655444 2556666666666665 34444455555666666666666665
Q ss_pred cCCCchhhcCCCCCCEEEccCCcccccCCCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccCh--Hh
Q 037786 215 SGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEP--YM 292 (565)
Q Consensus 215 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--~~ 292 (565)
.+..+..+..+++|++|++++| .++......+..+++|+.|++++|.+.+.... ..
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n----------------------~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 244 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMK----------------------QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST 244 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECS----------------------CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC----
T ss_pred CccCHHHHhccccCCeecCCCC----------------------ccccchhhhhhhcccccEEECCCCcccccccccccc
Confidence 5444455555555555555554 44322222233466677777777666543211 11
Q ss_pred hhcCCCCCEEEccCCccccccCC---cccCCCCCccEEEcCCCCCCCCCchh-h-ccccceEeccCCcCcccCC
Q 037786 293 LAKLVNLAALELSHNSLSFGTTS---KVNSSFPQIFILSLSACNISAFPSFL-R-SLELAYLDLSENNIDGQIP 361 (565)
Q Consensus 293 l~~~~~L~~L~l~~~~i~~~~~~---~~~~~~~~L~~L~l~~~~l~~l~~~~-~-~~~L~~L~l~~n~l~~~~~ 361 (565)
......++.++++++.+.+.... .....+++|+.|++++|+++.+|..+ . ..+|++|++++|++....+
T Consensus 245 ~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 245 GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp --CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 23456788888888877643221 22367899999999999999998764 3 3399999999999986554
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-23 Score=211.66 Aligned_cols=246 Identities=20% Similarity=0.221 Sum_probs=212.6
Q ss_pred CCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCC-CCCCCCCCcEEE
Q 037786 11 KLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFP-RSNWTSPLRCLD 89 (565)
Q Consensus 11 ~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~ 89 (565)
..+.++.++..+..++. .+++++++|++++|.++...+..|.++++|++|++++| .+.+..+ .+..+++|++|+
T Consensus 55 ~~~~v~c~~~~l~~iP~----~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~ 129 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQ----GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLE 129 (452)
T ss_dssp SSCEEECCSSCCSSCCS----CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEE
T ss_pred CCcEEEECCCCcCccCC----CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEE
Confidence 35688888888876643 34588999999999999888899999999999999999 5555543 445569999999
Q ss_pred ccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCC-cccccCCcCccCCCCCCEEEccCcccc
Q 037786 90 VSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFK-SFSGHIPPSLSNLHQLTDVDLGSNSFD 168 (565)
Q Consensus 90 l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~ 168 (565)
+++|.++...+..|..+++|++|++++|.+....+..|.++++|+.|+++++ .+....+..+..+++|+.|++++|.+.
T Consensus 130 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp CCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence 9999999777777999999999999999999888888999999999999985 455445557899999999999999998
Q ss_pred ccCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCC--C
Q 037786 169 GQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF--P 246 (565)
Q Consensus 169 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~ 246 (565)
.. +.+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+....+..+..+++|+.|++++|.+....... .
T Consensus 210 ~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 288 (452)
T 3zyi_A 210 DM-PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288 (452)
T ss_dssp SC-CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred cc-ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence 54 56889999999999999999888889999999999999999998888888999999999999999998665543 5
Q ss_pred CCCCcEEEccCCcccc
Q 037786 247 SKSLRKLYLTNNRLHG 262 (565)
Q Consensus 247 ~~~L~~L~l~~~~~~~ 262 (565)
.++|+.|++++|.+.+
T Consensus 289 l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 289 LRYLVELHLHHNPWNC 304 (452)
T ss_dssp CTTCCEEECCSSCEEC
T ss_pred ccCCCEEEccCCCcCC
Confidence 7899999999998764
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=8.7e-24 Score=200.93 Aligned_cols=203 Identities=24% Similarity=0.255 Sum_probs=109.3
Q ss_pred CCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCcc-ccccCcC-CcCCCCCCEEe
Q 037786 107 RHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNS-FDGQFPD-IMNLTRISRLD 184 (565)
Q Consensus 107 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~-~~~~~~L~~L~ 184 (565)
++|++|++++|.++...+..|..+++|++|++++|.+++..+.++..+++|++|++++|. +....+. +..+++|+.|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 345555555555554444445555555555555555554444455555555555555554 3333222 44555555555
Q ss_pred ccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCC--CCCCCCcEEEccCCcccc
Q 037786 185 ISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDA--FPSKSLRKLYLTNNRLHG 262 (565)
Q Consensus 185 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~ 262 (565)
+++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+...... ...++|++|++++|.+++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 555555544444455555555555555555544444455555555555555555543332 134555555555555555
Q ss_pred CCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccc
Q 037786 263 SIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLS 310 (565)
Q Consensus 263 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 310 (565)
..+..+..+++|+.|++++|.+.+ +++..+..+++|+.|++++|++.
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSCEE
T ss_pred cCHhHccCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccCCCcc
Confidence 555566666667777777766654 34445666666777777666654
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-23 Score=210.35 Aligned_cols=246 Identities=20% Similarity=0.230 Sum_probs=209.8
Q ss_pred CCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccC-CCCCCCCCCcEEE
Q 037786 11 KLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVF-PRSNWTSPLRCLD 89 (565)
Q Consensus 11 ~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~~~~~L~~L~ 89 (565)
..+.++.++..+..++. .+++++++|++++|+++...+..|.++++|++|++++| .+.... ..+..+++|++|+
T Consensus 44 ~~~~v~c~~~~l~~iP~----~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~ 118 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPD----GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLE 118 (440)
T ss_dssp TSCEEECCSCCCSSCCS----CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEE
T ss_pred CCCEEEeCCCCcCcCCC----CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEE
Confidence 35688888888876653 33578999999999999888889999999999999999 555444 3445569999999
Q ss_pred ccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCC-cccccCCcCccCCCCCCEEEccCcccc
Q 037786 90 VSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFK-SFSGHIPPSLSNLHQLTDVDLGSNSFD 168 (565)
Q Consensus 90 l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~ 168 (565)
+++|.++...+..|..+++|++|++++|.+....+..|.++++|+.|+++++ .+....+..|.++++|+.|++++|.+.
T Consensus 119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp CCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred CCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence 9999999766678999999999999999999888888999999999999985 455455557899999999999999988
Q ss_pred ccCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCC--C
Q 037786 169 GQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF--P 246 (565)
Q Consensus 169 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~ 246 (565)
.. +.+..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+....+..|..+++|+.|++++|++....... .
T Consensus 199 ~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 277 (440)
T 3zyj_A 199 EI-PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277 (440)
T ss_dssp SC-CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred cc-cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence 44 56888999999999999999888899999999999999999998888888999999999999999998766543 5
Q ss_pred CCCCcEEEccCCcccc
Q 037786 247 SKSLRKLYLTNNRLHG 262 (565)
Q Consensus 247 ~~~L~~L~l~~~~~~~ 262 (565)
.++|+.|++++|.+.+
T Consensus 278 l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 278 LHHLERIHLHHNPWNC 293 (440)
T ss_dssp CTTCCEEECCSSCEEC
T ss_pred ccCCCEEEcCCCCccC
Confidence 6899999999998764
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-24 Score=207.32 Aligned_cols=236 Identities=16% Similarity=0.102 Sum_probs=149.4
Q ss_pred CCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEc
Q 037786 35 SSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHL 114 (565)
Q Consensus 35 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 114 (565)
++|++|++++|.+++..+..+..+++|++|++++| .+.+..+ +..+++|++|++++|.+++. + ..++|++|++
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~n~l~~l-~----~~~~L~~L~l 106 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQEL-L----VGPSIETLHA 106 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCSSEEEEE-E----ECTTCCEEEC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcCCccccc-c----CCCCcCEEEC
Confidence 55666666666666544555666666666666665 3333222 33446666666666665532 1 2366677777
Q ss_pred ccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcC-C-cCCCCCCEEeccCCcccc
Q 037786 115 SQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD-I-MNLTRISRLDISNNQLTG 192 (565)
Q Consensus 115 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~-~~~~~L~~L~l~~~~~~~ 192 (565)
++|.+....+.. +++|+.|++++|.+++..+..+..+++|++|++++|.+....+. + ..+++|+.|++++|.+++
T Consensus 107 ~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 107 ANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp CSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 776665544332 45667777777776655555666667777777777766654433 3 356677777777777664
Q ss_pred cCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCC-CCCCCcEEEccCCccc-cCCchhhhc
Q 037786 193 SIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF-PSKSLRKLYLTNNRLH-GSIPSSIFE 270 (565)
Q Consensus 193 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~-~~~~~~~~~ 270 (565)
... ...+++|++|++++|.+... +..+..+++|+.|++++|.+....... ..++|+.|++++|.+. +..+.++..
T Consensus 184 ~~~--~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~ 260 (317)
T 3o53_A 184 VKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (317)
T ss_dssp EEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHT
T ss_pred ccc--ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhc
Confidence 422 22367777777777777643 334667777777777777777544433 5577888888888877 566778888
Q ss_pred CCCcCcccccccc
Q 037786 271 LANLTYLSLASNN 283 (565)
Q Consensus 271 ~~~L~~L~l~~n~ 283 (565)
+++|+.++++++.
T Consensus 261 ~~~L~~l~l~~~~ 273 (317)
T 3o53_A 261 NQRVQTVAKQTVK 273 (317)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cccceEEECCCch
Confidence 8999999998654
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=3e-24 Score=219.03 Aligned_cols=227 Identities=25% Similarity=0.225 Sum_probs=149.6
Q ss_pred CcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCchhhccccceEecc
Q 037786 273 NLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLS 352 (565)
Q Consensus 273 ~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~ 352 (565)
+|+.|++++|.+... ++..+..+++|+.|++++|.++...+ +..+++|+.|++++|.++.++.
T Consensus 35 ~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~------------- 97 (487)
T 3oja_A 35 NVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV------------- 97 (487)
T ss_dssp GCCEEECCSSCCCCC-CGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEE-------------
T ss_pred CccEEEeeCCcCCCC-CHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCC-------------
Confidence 566666666666543 33445566666666666665543322 2444455555555554433221
Q ss_pred CCcCcccCChhhhhhCCCCccEEEcCCCccCCccCCCCCCCCeEEcCCCcccccCCCC---CCCCcEEEccccccCccch
Q 037786 353 ENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVP---PPRLQFLLASNNQFTGEII 429 (565)
Q Consensus 353 ~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~---~~~L~~L~l~~n~i~~~~~ 429 (565)
.++|+.|++++|.++.+++..+++|+.|++++|.+.+..+.. +++|++|++++|.+++..+
T Consensus 98 ----------------~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (487)
T 3oja_A 98 ----------------GPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (487)
T ss_dssp ----------------CTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG
T ss_pred ----------------CCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh
Confidence 255666666666666666666667777777777776654432 6778888888888887777
Q ss_pred hhhh-hcCCCCCCccccccCCCCCcEEeCcCCCCCCCc-ccCCCcccEEECCCCcccccCCC--CCCCCcEeeccCceee
Q 037786 430 QSIC-SSSTLEIPSWISEIGKDSLSYLNLSHNFITKMK-QISWKNLGYLDLRSNLLQGPLLV--PPSSLRVILILNNQFT 505 (565)
Q Consensus 430 ~~l~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~l~~n~~~ 505 (565)
..+. .+ ++|++|++++|.+++.+ ...+++|+.|++++|.+++..+. .+++|+.|++++|.++
T Consensus 162 ~~l~~~l--------------~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 162 AELAASS--------------DTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV 227 (487)
T ss_dssp GGGGGGT--------------TTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC
T ss_pred HHHhhhC--------------CcccEEecCCCccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc
Confidence 6665 55 78888888888888773 36677888888888888764333 6778888888888887
Q ss_pred eccchhhhcCCCCCEEeCCCCcCc-ccCCCCCCCCCCCccccc
Q 037786 506 GEIIHSICDIIALDVLDLSNNRLS-GTIPKCIGNFSPWCQTKW 547 (565)
Q Consensus 506 ~~~~~~l~~~~~L~~L~l~~n~~~-~~~p~~l~~l~~L~~l~~ 547 (565)
+ +|..+..+++|+.|++++|++. +.+|..++.++.|..+..
T Consensus 228 ~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 228 L-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp E-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred c-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 5 5666778888888888888887 356666777777766655
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.5e-24 Score=204.80 Aligned_cols=201 Identities=23% Similarity=0.235 Sum_probs=127.8
Q ss_pred CCCCcEEEccCCccCccCCccc--cCCCCCCEEEcccccCcccCchhccCC-----CCCCeeeccCCcccccCCcCccCC
Q 037786 82 TSPLRCLDVSGTRFSGQLPDSI--CNLRHLRELHLSQCNFYGFLPASLGNV-----TQLAVLSLSFKSFSGHIPPSLSNL 154 (565)
Q Consensus 82 ~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~L~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~l 154 (565)
.++|++|++++|.+++..|..+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..+..+..+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 3455556666666665555554 5666666666666666655 5555555 667777777776665555666666
Q ss_pred CCCCEEEccCcccccc---CcC--CcCCCCCCEEeccCCcccc---cCCCCCcCCCCCCEEEcccccccCCCc-hhhcCC
Q 037786 155 HQLTDVDLGSNSFDGQ---FPD--IMNLTRISRLDISNNQLTG---SIPSHGSGLQNLAVLRLYNNTLSGTIP-SWLFTL 225 (565)
Q Consensus 155 ~~L~~L~l~~~~~~~~---~~~--~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~l~~~ 225 (565)
++|++|++++|.+.+. +.. +..+++|++|++++|.+.+ .....+..+++|++|++++|.+.+..+ ..+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 7777777776665432 112 2566777777777776652 112233456677777777777765442 344556
Q ss_pred CCCCEEEccCCcccccCCCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccC
Q 037786 226 PLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSG 286 (565)
Q Consensus 226 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 286 (565)
++|+.|++++|.+...+.... ++|++|++++|.+++. |. +..+++|+.|++++|.+.+
T Consensus 253 ~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 253 SQLNSLNLSFTGLKQVPKGLP-AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp TTCCEEECTTSCCSSCCSSCC-SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCCEEECCCCccChhhhhcc-CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 777777777777774433334 7788888888888754 54 7778888888888888764
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-24 Score=208.16 Aligned_cols=246 Identities=21% Similarity=0.210 Sum_probs=187.1
Q ss_pred ccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccC-ccCCcccc-------CCCCCCEEEcccccCcccCchh
Q 037786 55 IFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFS-GQLPDSIC-------NLRHLRELHLSQCNFYGFLPAS 126 (565)
Q Consensus 55 ~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~-------~l~~L~~L~L~~~~~~~~~~~~ 126 (565)
+...++|++|++++| .. ..+.... ..|++|++++|.+. ..++..+. ++++|++|++++|.+++..|..
T Consensus 39 ~~~~~~L~~l~l~~n-~l--~~p~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVD-TE--ADLGQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCC-TT--CCCHHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccc-cc--ccHHHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 445567777777777 33 2221111 23777788888773 34555554 7899999999999998777776
Q ss_pred c--cCCCCCCeeeccCCcccccCCcCccCC-----CCCCEEEccCccccccCcC-CcCCCCCCEEeccCCccccc--CCC
Q 037786 127 L--GNVTQLAVLSLSFKSFSGHIPPSLSNL-----HQLTDVDLGSNSFDGQFPD-IMNLTRISRLDISNNQLTGS--IPS 196 (565)
Q Consensus 127 ~--~~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~--~~~ 196 (565)
+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+....+. ++.+++|++|++++|++.+. .+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 6 8899999999999999866 7777666 8999999999999877754 88999999999999987643 122
Q ss_pred --CCcCCCCCCEEEcccccccCC---CchhhcCCCCCCEEEccCCcccccCCC---CCCCCCcEEEccCCccccCCchhh
Q 037786 197 --HGSGLQNLAVLRLYNNTLSGT---IPSWLFTLPLLRDIDLSDNQLTGHLDA---FPSKSLRKLYLTNNRLHGSIPSSI 268 (565)
Q Consensus 197 --~~~~~~~L~~L~l~~~~l~~~---~~~~l~~~~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~ 268 (565)
.+..+++|++|++++|.+... ....+..+++|+.|++++|.+.+..+. ...++|++|++++|.++ .+|..+
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~ 272 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence 237789999999999988732 223456788999999999999875522 24688999999999998 666666
Q ss_pred hcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCcccc
Q 037786 269 FELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSF 311 (565)
Q Consensus 269 ~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~ 311 (565)
. ++|+.|++++|++.+. + . +..+++|++|++++|++++
T Consensus 273 ~--~~L~~L~Ls~N~l~~~-p-~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 273 P--AKLSVLDLSYNRLDRN-P-S-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp C--SEEEEEECCSSCCCSC-C-C-TTTSCEEEEEECTTCTTTC
T ss_pred c--CCceEEECCCCCCCCC-h-h-HhhCCCCCEEeccCCCCCC
Confidence 5 7899999999999865 3 3 7888999999999998864
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-22 Score=204.75 Aligned_cols=233 Identities=17% Similarity=0.117 Sum_probs=129.1
Q ss_pred CccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEcc
Q 037786 36 SLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLS 115 (565)
Q Consensus 36 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~ 115 (565)
+|++|++++|.+++..|..|..+++|++|++++| .+.+..+ +..+++|++|++++|.+++. + ..++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQEL-L----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCcCCCC-C----CCCCcCEEECc
Confidence 4555555555555444455555555555555555 3333222 33335555555555555422 1 12556666666
Q ss_pred cccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcC-Cc-CCCCCCEEeccCCccccc
Q 037786 116 QCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD-IM-NLTRISRLDISNNQLTGS 193 (565)
Q Consensus 116 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~ 193 (565)
+|.+.+..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..+. +. .+++|+.|++++|.+++.
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 6655544332 235556666666666555555555566666666666665543332 32 456666666666665544
Q ss_pred CCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCC-CCCCCcEEEccCCccc-cCCchhhhcC
Q 037786 194 IPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF-PSKSLRKLYLTNNRLH-GSIPSSIFEL 271 (565)
Q Consensus 194 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~-~~~~~~~~~~ 271 (565)
.+ ...+++|+.|++++|.+.+..+ .+..+++|+.|++++|.+.+.+... ..++|+.|++++|.+. +..+.++..+
T Consensus 185 ~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l 261 (487)
T 3oja_A 185 KG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (487)
T ss_dssp EC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTC
T ss_pred cc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhC
Confidence 22 2235666666666666654322 3556666666666666666544333 4466777777777766 3455667777
Q ss_pred CCcCcccccc
Q 037786 272 ANLTYLSLAS 281 (565)
Q Consensus 272 ~~L~~L~l~~ 281 (565)
+.++.+++..
T Consensus 262 ~~L~~l~~~~ 271 (487)
T 3oja_A 262 QRVQTVAKQT 271 (487)
T ss_dssp HHHHHHHHHH
T ss_pred CCCcEEeccc
Confidence 7777777753
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-21 Score=184.43 Aligned_cols=222 Identities=21% Similarity=0.220 Sum_probs=182.3
Q ss_pred EEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCC-CCCCCCCCcEEEccC
Q 037786 14 LLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFP-RSNWTSPLRCLDVSG 92 (565)
Q Consensus 14 ~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~l~~ 92 (565)
.++..+..+..++. .+|+++++|++++|.+++..+..+..+++|++|++++| .+....+ .+...++|++|++++
T Consensus 11 ~~~c~~~~l~~ip~----~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~ 85 (276)
T 2z62_A 11 TYQCMELNFYKIPD----NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTG 85 (276)
T ss_dssp EEECTTSCCSSCCS----SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTT
T ss_pred eEEecCCCccccCC----CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCC
Confidence 45666666654432 34578999999999999777778999999999999998 5555444 345559999999999
Q ss_pred CccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCccccc-CCcCccCCCCCCEEEccCccccccC
Q 037786 93 TRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGH-IPPSLSNLHQLTDVDLGSNSFDGQF 171 (565)
Q Consensus 93 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~ 171 (565)
|.+++..+..|.++++|++|++++|.+....+..+.++++|++|++++|.+.+. +|..+..+++|+.|++++|.+....
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence 999877778899999999999999999887777899999999999999999863 5889999999999999999998765
Q ss_pred cC-CcCCCCCC----EEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCccccc
Q 037786 172 PD-IMNLTRIS----RLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGH 241 (565)
Q Consensus 172 ~~-~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~ 241 (565)
+. +..+++|+ .+++++|.+.+..+..+. ..+|+.|++++|.+....+..+..+++|+.|++++|++...
T Consensus 166 ~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp GGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred HHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 54 55555555 899999999866655554 45899999999999877677788999999999999998853
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.1e-21 Score=180.89 Aligned_cols=202 Identities=20% Similarity=0.207 Sum_probs=119.1
Q ss_pred CCCCEEecCCCCCCCccCC-CCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeee
Q 037786 59 SNLQMVRLKFNSNLSGVFP-RSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLS 137 (565)
Q Consensus 59 ~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ 137 (565)
++|++|++++| .+.+..+ .+...++|++|++++|.++...+..|.++++|++|++++|.++...+..|.++++|++|+
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 35666666666 4444333 333346666666666666655555666666666666666666666556666666666666
Q ss_pred ccCCcccccCCcCccCCCCCCEEEccCcccccc--CcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCC----EEEccc
Q 037786 138 LSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQ--FPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLA----VLRLYN 211 (565)
Q Consensus 138 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~l~~ 211 (565)
+++|.+....+..+..+++|++|++++|.+... +..+..+++|+.|++++|++++..+..+..+++++ .|++++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCC
Confidence 666666654444566666666666666666542 23366666666666666666655444555444444 666666
Q ss_pred ccccCCCchhhcCCCCCCEEEccCCcccccCCCC--CCCCCcEEEccCCcccc
Q 037786 212 NTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF--PSKSLRKLYLTNNRLHG 262 (565)
Q Consensus 212 ~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~ 262 (565)
|.+....+..+. ..+|+.|++++|.+.+..... ..++|+.|++++|.+.+
T Consensus 187 n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 187 NPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp SCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred CcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 666543333332 235666666666666544332 45566666666666653
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-20 Score=176.76 Aligned_cols=200 Identities=20% Similarity=0.246 Sum_probs=114.1
Q ss_pred CcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEcc
Q 037786 12 LQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVS 91 (565)
Q Consensus 12 L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~ 91 (565)
.++++++++.++.++. .+++++++|++++|.++...+.+|..+++|++|++++|
T Consensus 18 ~~~l~~~~~~l~~ip~----~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n---------------------- 71 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPS----NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN---------------------- 71 (270)
T ss_dssp TTEEECTTSCCSSCCS----CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS----------------------
T ss_pred CCEEEccCCCCCccCC----CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC----------------------
Confidence 4555666555554322 12345566666666555444445555555555555554
Q ss_pred CCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccC
Q 037786 92 GTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQF 171 (565)
Q Consensus 92 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 171 (565)
.++...+..|..+++|++|++++|.+....+..|.++++|++|++++|.++...+..+..+++|++|++++|.+....
T Consensus 72 --~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 149 (270)
T 2o6q_A 72 --KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP 149 (270)
T ss_dssp --CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred --ccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC
Confidence 444333334455556666666666555555555555666666666666655545555556666666666666655444
Q ss_pred cC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCccc
Q 037786 172 PD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLT 239 (565)
Q Consensus 172 ~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~ 239 (565)
+. +..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|++.
T Consensus 150 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 150 KGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred HhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 44 555666666666666666555555666666666666666666544455666666666776666654
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=185.72 Aligned_cols=195 Identities=22% Similarity=0.141 Sum_probs=157.1
Q ss_pred CCCCCccEEEcCCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCC-CCCCCCeEE
Q 037786 319 SSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI-PWKNLKYLK 397 (565)
Q Consensus 319 ~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~ 397 (565)
..++++++++++++.++.+|..+. ..++.|++++|.+++..+..+. .+++|+.|++++|.++.++.. .+++|++|+
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 83 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLM--PYTRLTQLNLDRAELTKLQVDGTLPVLGTLD 83 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGT--TCTTCCEEECTTSCCCEEECCSCCTTCCEEE
T ss_pred cccCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCHHHhh--cCCCCCEEECCCCccCcccCCCCCCcCCEEE
Confidence 456778888888888887775443 3788888888888755454444 568899999999988887774 778899999
Q ss_pred cCCCcccccCC--CCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcc---cCCCc
Q 037786 398 LQSNLLQGPLP--VPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQ---ISWKN 472 (565)
Q Consensus 398 l~~n~~~~~~~--~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~ 472 (565)
+++|++..... ..+++|++|++++|++++..+..+..+ ++|++|++++|++..+|. ..+++
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l--------------~~L~~L~L~~N~l~~~~~~~~~~l~~ 149 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL--------------GELQELYLKGNELKTLPPGLLTPTPK 149 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTC--------------TTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCC--------------CCCCEEECCCCCCCccChhhcccccC
Confidence 99998874322 237899999999999997777777777 899999999999998844 56789
Q ss_pred ccEEECCCCcccccCCC---CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCccc
Q 037786 473 LGYLDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGT 531 (565)
Q Consensus 473 L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 531 (565)
|+.|++++|++++..+. .+++|+.|++++|.++ .+|..+...++|+.|+|++|++.|.
T Consensus 150 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred CCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCc
Confidence 99999999999863332 6899999999999998 5677788889999999999999876
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.87 E-value=9.3e-21 Score=179.68 Aligned_cols=202 Identities=20% Similarity=0.172 Sum_probs=157.7
Q ss_pred hhCCCCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCC
Q 037786 6 VQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPL 85 (565)
Q Consensus 6 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L 85 (565)
+++++++++++++++.+..++.. +++++++|++++|.++...+..+..+++|++|++++| .+..... ....++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~----~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPD----LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV-DGTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSC----CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC-CSCCTTC
T ss_pred ccccCCccEEECCCCCCCcCCCC----CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccC-CCCCCcC
Confidence 57889999999999999876542 3478999999999999888889999999999999998 4544333 3555888
Q ss_pred cEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCc
Q 037786 86 RCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSN 165 (565)
Q Consensus 86 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (565)
++|++++|.++ .+|..+..+++|++|++++|.++...+..|.++++|++|++++|.+....+..|..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 88888888887 66777788888888888888888777777888888888888888887666666777888888888888
Q ss_pred cccccCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEccccccc
Q 037786 166 SFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLS 215 (565)
Q Consensus 166 ~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 215 (565)
.+....+. +..+++|+.|++++|++. .+|..+...++|+.+++++|.+.
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 87766555 566777777777777777 45555556667777777777664
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-20 Score=175.11 Aligned_cols=181 Identities=22% Similarity=0.262 Sum_probs=159.5
Q ss_pred CCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEc
Q 037786 83 SPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDL 162 (565)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 162 (565)
+.+++|++++|.++...+..|.++++|++|++++|.++...+..|.++++|++|++++|.+....+..+..+++|++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 46777777788887666678999999999999999999887778899999999999999999777778899999999999
Q ss_pred cCccccccCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCccccc
Q 037786 163 GSNSFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGH 241 (565)
Q Consensus 163 ~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~ 241 (565)
++|.+....+. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+...
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence 99999877766 78999999999999999977777789999999999999999877777899999999999999999876
Q ss_pred CCCC--CCCCCcEEEccCCccccC
Q 037786 242 LDAF--PSKSLRKLYLTNNRLHGS 263 (565)
Q Consensus 242 ~~~~--~~~~L~~L~l~~~~~~~~ 263 (565)
.... ..++|+.|++++|.+...
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 197 PEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCS
T ss_pred CHHHhccccCCCEEEecCCCeeCC
Confidence 6542 568999999999987643
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=176.73 Aligned_cols=216 Identities=20% Similarity=0.222 Sum_probs=155.4
Q ss_pred EEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCC
Q 037786 14 LLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGT 93 (565)
Q Consensus 14 ~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~ 93 (565)
.+++..+.+.+. .....+ ++|++|+++++.++. ...+..+++|++|++++| .+.+ ++.+..+++|++|++++|
T Consensus 23 ~l~l~~~~~~~~--~~~~~l-~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n-~l~~-~~~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 23 KANLKKKSVTDA--VTQNEL-NSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGN-KLHD-ISALKELTNLTYLILTGN 95 (272)
T ss_dssp HHHHTCSCTTSE--ECHHHH-TTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTS-CCCC-CGGGTTCTTCCEEECTTS
T ss_pred HHHhcCcccccc--cccccc-cceeeeeeCCCCccc--ccccccCCCCcEEECCCC-CCCC-chhhcCCCCCCEEECCCC
Confidence 344555554443 234555 778888888877762 334777788888888877 4433 334445577888888888
Q ss_pred ccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcC
Q 037786 94 RFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD 173 (565)
Q Consensus 94 ~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 173 (565)
.+++..+..|..+++|++|++++|.+....+..|.++++|++|++++|.+++..+..+..+++|+.|++++|.+....+.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 175 (272)
T 3rfs_A 96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH
Confidence 88766666677888888888888888777777778888888888888888766666677888888888888887766655
Q ss_pred -CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCC
Q 037786 174 -IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLD 243 (565)
Q Consensus 174 -~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 243 (565)
+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+ .++.++.+++..|.+.+..+
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBB
T ss_pred HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCccc
Confidence 6778888888888888887766667788888888888887653 35567777777777765544
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.85 E-value=8.9e-21 Score=178.52 Aligned_cols=224 Identities=20% Similarity=0.214 Sum_probs=170.9
Q ss_pred ccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEccc
Q 037786 37 LTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQ 116 (565)
Q Consensus 37 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~ 116 (565)
+..+++..+.+.+. .....+++|+.|+++++ ... .++....+++|++|++++|.+++ + ..+..+++|++|++++
T Consensus 21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~-~i~-~~~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNS-DIK-SVQGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTS-CCC-CCTTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTT
T ss_pred HHHHHhcCcccccc--cccccccceeeeeeCCC-Ccc-cccccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCC
Confidence 45566666666532 34567889999999987 333 34445556889999999988875 2 4688888999999998
Q ss_pred ccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcC-CcCCCCCCEEeccCCcccccCC
Q 037786 117 CNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD-IMNLTRISRLDISNNQLTGSIP 195 (565)
Q Consensus 117 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~ 195 (565)
|.+++..+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+....+. +..+++|+.|++++|.+++..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 174 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCH
Confidence 888877777788888999999999988876667788888899999998888866665 6788888888888888887777
Q ss_pred CCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCCCCCCCcEEEccCCccccCCchhhhcC
Q 037786 196 SHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFEL 271 (565)
Q Consensus 196 ~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 271 (565)
..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++... ++.++.++++.|.+++.+|.++..+
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-----~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-----CPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-----TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred HHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-----CcHHHHHHHHHHhCCCcccCccccc
Confidence 7778888888888888888876667778888888888888876632 3456666666666666666555443
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=7.3e-20 Score=175.36 Aligned_cols=207 Identities=20% Similarity=0.246 Sum_probs=134.6
Q ss_pred cCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCchhhccccceEeccC
Q 037786 274 LTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSE 353 (565)
Q Consensus 274 L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~ 353 (565)
+....+..+.+.+... ...+++|++|++++|.+.... . ...+++|+.|++++|.+..++.+....+|++|++++
T Consensus 21 ~~~~~l~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~l~--~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~ 94 (308)
T 1h6u_A 21 AIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVTTIE--G-VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSG 94 (308)
T ss_dssp HHHHHTTCSSTTSEEC---HHHHHTCCEEECTTSCCCCCT--T-GGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCS
T ss_pred HHHHHhCCCCcCceec---HHHcCCcCEEEeeCCCccCch--h-hhccCCCCEEEccCCcCCCChhHccCCCCCEEEccC
Confidence 4445555655554332 456778899999988876532 2 366788888888888888777744444888888888
Q ss_pred CcCcccCChhhhhhCCCCccEEEcCCCccCCccCC-CCCCCCeEEcCCCcccccCCC-CCCCCcEEEccccccCccchhh
Q 037786 354 NNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI-PWKNLKYLKLQSNLLQGPLPV-PPPRLQFLLASNNQFTGEIIQS 431 (565)
Q Consensus 354 n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~l~~n~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~ 431 (565)
|.+++ ++ .+. .+++|+.|++++|.++.++.. .+++|++|++++|.+.+..+. .+++|++|++++|++++..+
T Consensus 95 n~l~~-~~-~~~--~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-- 168 (308)
T 1h6u_A 95 NPLKN-VS-AIA--GLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-- 168 (308)
T ss_dssp CCCSC-CG-GGT--TCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--
T ss_pred CcCCC-ch-hhc--CCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh--
Confidence 88773 33 222 567788888888887776653 567777777777776654322 26667777777776664333
Q ss_pred hhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCc-ccCCCcccEEECCCCcccccCCC-CCCCCcEeeccCceeee
Q 037786 432 ICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMK-QISWKNLGYLDLRSNLLQGPLLV-PPSSLRVILILNNQFTG 506 (565)
Q Consensus 432 l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~l~~n~~~~ 506 (565)
+..+ ++|++|++++|.+++++ ...+++|+.|++++|.+++..+. .+++|+.|++++|+++.
T Consensus 169 l~~l--------------~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 169 LANL--------------SKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GTTC--------------TTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEEC
T ss_pred hcCC--------------CCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeeec
Confidence 4444 66777777777766663 35566666666666666553222 56666666666666654
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-19 Score=172.81 Aligned_cols=195 Identities=23% Similarity=0.355 Sum_probs=136.1
Q ss_pred hhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCC
Q 037786 30 LKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHL 109 (565)
Q Consensus 30 ~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 109 (565)
...+ ++|++|+++++.++. .+ .+..+++|++|++++| .+.+..+ +..+++|++|++++|.+++ + ..+..+++|
T Consensus 37 ~~~l-~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L 109 (308)
T 1h6u_A 37 QADL-DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLKN-V-SAIAGLQSI 109 (308)
T ss_dssp HHHH-HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTC
T ss_pred HHHc-CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCC
Confidence 3444 667777777777763 33 4667777777777777 4444333 4455777777777777764 2 357777888
Q ss_pred CEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcCCcCCCCCCEEeccCCc
Q 037786 110 RELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQ 189 (565)
Q Consensus 110 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 189 (565)
++|++++|.+++.. .+..+++|+.|++++|.+.+.. . +..+++|+.|++++|.+....+ +..+++|+.|++++|.
T Consensus 110 ~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 110 KTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNIS-P-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK 184 (308)
T ss_dssp CEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCG-G-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred CEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCc-c-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc
Confidence 88888888776542 3777788888888888776432 2 6777888888888887765444 7777888888888887
Q ss_pred ccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccc
Q 037786 190 LTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG 240 (565)
Q Consensus 190 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 240 (565)
+.+..+ +..+++|++|++++|.+.+.. .+..+++|+.|++++|++..
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred cCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 775433 667788888888888876443 36778888888888888764
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.81 E-value=3e-19 Score=164.78 Aligned_cols=199 Identities=16% Similarity=0.169 Sum_probs=116.2
Q ss_pred cCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCC-CCCCCCCCcEEEccC-CccCccCCccccCCCCCC
Q 037786 33 LSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFP-RSNWTSPLRCLDVSG-TRFSGQLPDSICNLRHLR 110 (565)
Q Consensus 33 l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~ 110 (565)
.++++++|++++|+++...+..|..+++|++|++++|+......+ .+..+++|++|++++ |.++...+..|.++++|+
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 346788888888888866666778888888888877721333332 223346666666665 566644445566666666
Q ss_pred EEEcccccCcccCchhccCCCCCC---eeeccCC-cccccCCcCccCCCCCC-EEEccCccccccCcCCcCCCCCCEEec
Q 037786 111 ELHLSQCNFYGFLPASLGNVTQLA---VLSLSFK-SFSGHIPPSLSNLHQLT-DVDLGSNSFDGQFPDIMNLTRISRLDI 185 (565)
Q Consensus 111 ~L~L~~~~~~~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~~~~~~L~~L~l 185 (565)
+|++++|.++. .|. |..+++|+ .|++++| .+....+..|..+++|+ .+++++|.+..........++|+.|++
T Consensus 109 ~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L 186 (239)
T 2xwt_C 109 FLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYL 186 (239)
T ss_dssp EEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEEC
T ss_pred EEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEc
Confidence 66666666654 232 55555555 6666666 55554445566666666 666666666544443222255666666
Q ss_pred cCCc-ccccCCCCCcCC-CCCCEEEcccccccCCCchhhcCCCCCCEEEccCC
Q 037786 186 SNNQ-LTGSIPSHGSGL-QNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDN 236 (565)
Q Consensus 186 ~~~~-~~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~ 236 (565)
++|+ +....+..|..+ ++|+.|++++|.++...+. .+++|+.|+++++
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 6663 554444555555 5666666666655532222 3445555555443
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.7e-21 Score=187.60 Aligned_cols=248 Identities=18% Similarity=0.211 Sum_probs=148.2
Q ss_pred CCccEEEccCCcccccCCccccCC--CCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCcc-CCccccCCCCCCE
Q 037786 35 SSLTSLSLSYCRIQGEFPENIFRL--SNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQ-LPDSICNLRHLRE 111 (565)
Q Consensus 35 ~~L~~L~l~~~~i~~~~~~~~~~l--~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~ 111 (565)
..+++++++++.+. +..+..+ ++++.|+++++ ...+..+.....++|++|++++|.+++. ++..+..+++|++
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCc-cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 34566666665554 3334444 56666666665 4444444444456666666666666543 5556667777777
Q ss_pred EEcccccCcccCchhccCCCCCCeeeccCC-ccccc-CCcCccCCCCCCEEEccCc-ccccc--CcCCcCCC-CCCEEec
Q 037786 112 LHLSQCNFYGFLPASLGNVTQLAVLSLSFK-SFSGH-IPPSLSNLHQLTDVDLGSN-SFDGQ--FPDIMNLT-RISRLDI 185 (565)
Q Consensus 112 L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~~-~~~~~--~~~~~~~~-~L~~L~l 185 (565)
|++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+... ...+..++ +|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 777777766666666667777777777777 45532 4445666777777777777 65532 22255666 7777777
Q ss_pred cCCc--cc-ccCCCCCcCCCCCCEEEccccc-ccCCCchhhcCCCCCCEEEccCCc-ccccC--CCCCCCCCcEEEccCC
Q 037786 186 SNNQ--LT-GSIPSHGSGLQNLAVLRLYNNT-LSGTIPSWLFTLPLLRDIDLSDNQ-LTGHL--DAFPSKSLRKLYLTNN 258 (565)
Q Consensus 186 ~~~~--~~-~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~L~~L~l~~~~-~~~~~--~~~~~~~L~~L~l~~~ 258 (565)
++|. ++ ...+..+..+++|++|++++|. ++...+..+..+++|+.|++++|. +.... .....++|++|++++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 7773 33 2334445566777777777776 554455566677777777777774 22111 1124677777777777
Q ss_pred ccccCCchhhhcCCCcCccccccccccCccC
Q 037786 259 RLHGSIPSSIFELANLTYLSLASNNFSGIVE 289 (565)
Q Consensus 259 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 289 (565)
+++.....+. .++..|++++|.+++..+
T Consensus 283 -i~~~~~~~l~--~~l~~L~l~~n~l~~~~~ 310 (336)
T 2ast_B 283 -VPDGTLQLLK--EALPHLQINCSHFTTIAR 310 (336)
T ss_dssp -SCTTCHHHHH--HHSTTSEESCCCSCCTTC
T ss_pred -cCHHHHHHHH--hhCcceEEecccCccccC
Confidence 4433222222 246667788888876544
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-20 Score=184.00 Aligned_cols=228 Identities=17% Similarity=0.168 Sum_probs=122.8
Q ss_pred CCCcEEEccCCccCccCCccccCCCCCCEEEcccccCccc-CchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEE
Q 037786 83 SPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGF-LPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVD 161 (565)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 161 (565)
+.++.++++++.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 5566666666666644333 44566666666666665543 445556666666666666666555555566666666666
Q ss_pred ccCc-cccc--cCcCCcCCCCCCEEeccCC-ccccc-CCCCCcCCC-CCCEEEccccc--cc-CCCchhhcCCCCCCEEE
Q 037786 162 LGSN-SFDG--QFPDIMNLTRISRLDISNN-QLTGS-IPSHGSGLQ-NLAVLRLYNNT--LS-GTIPSWLFTLPLLRDID 232 (565)
Q Consensus 162 l~~~-~~~~--~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~~~~--l~-~~~~~~l~~~~~L~~L~ 232 (565)
+++| .+.. ....+..+++|++|++++| .+++. .+..+..++ +|++|++++|. ++ ...+..+..+++|+.|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 6666 3442 1222555666666666666 55532 233445556 66666666663 32 22334455566666666
Q ss_pred ccCCc-ccccCC--CCCCCCCcEEEccCCc-cccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCc
Q 037786 233 LSDNQ-LTGHLD--AFPSKSLRKLYLTNNR-LHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNS 308 (565)
Q Consensus 233 l~~~~-~~~~~~--~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~ 308 (565)
+++|. +.+... ....++|++|++++|. +.......+..+++|+.|++++| +..... ..+. ..++.|++++|.
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~-~~l~--~~l~~L~l~~n~ 304 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTL-QLLK--EALPHLQINCSH 304 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCH-HHHH--HHSTTSEESCCC
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHH-HHHH--hhCcceEEeccc
Confidence 66666 332111 1244666666666663 22222224555666666666666 332211 1111 123344456666
Q ss_pred cccccCC
Q 037786 309 LSFGTTS 315 (565)
Q Consensus 309 i~~~~~~ 315 (565)
++...+.
T Consensus 305 l~~~~~~ 311 (336)
T 2ast_B 305 FTTIARP 311 (336)
T ss_dssp SCCTTCS
T ss_pred CccccCC
Confidence 6544443
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.7e-19 Score=163.44 Aligned_cols=197 Identities=17% Similarity=0.192 Sum_probs=109.9
Q ss_pred CCCcEEEccCCccCccCCccccCCCCCCEEEccccc-CcccCchhccCCCCCCeeeccC-CcccccCCcCccCCCCCCEE
Q 037786 83 SPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCN-FYGFLPASLGNVTQLAVLSLSF-KSFSGHIPPSLSNLHQLTDV 160 (565)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L 160 (565)
+++++|++++|.++...+..|..+++|++|++++|. ++...+.+|.++++|++|++++ |.++...+.+|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 356666666666665545566666666666666665 6555555666666666666666 66665555566666666666
Q ss_pred EccCccccccCcCCcCCCCCC---EEeccCC-cccccCCCCCcCCCCCC-EEEcccccccCCCchhhcCCCCCCEEEccC
Q 037786 161 DLGSNSFDGQFPDIMNLTRIS---RLDISNN-QLTGSIPSHGSGLQNLA-VLRLYNNTLSGTIPSWLFTLPLLRDIDLSD 235 (565)
Q Consensus 161 ~l~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~ 235 (565)
++++|.+...+ .+..+++|+ .|++++| .+....+..|..+++|+ .|++++|.+....+..+.. +
T Consensus 111 ~l~~n~l~~lp-~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~--------- 179 (239)
T 2xwt_C 111 GIFNTGLKMFP-DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-T--------- 179 (239)
T ss_dssp EEEEECCCSCC-CCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-C---------
T ss_pred eCCCCCCcccc-ccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-C---------
Confidence 66666665432 255555555 6666665 55544444455555555 5555555554222222222 3
Q ss_pred CcccccCCCCCCCCCcEEEccCCc-cccCCchhhhcC-CCcCccccccccccCccChHhhhcCCCCCEEEccCC
Q 037786 236 NQLTGHLDAFPSKSLRKLYLTNNR-LHGSIPSSIFEL-ANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHN 307 (565)
Q Consensus 236 ~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~ 307 (565)
+|++|++++|. ++...+..+..+ ++|+.|++++|.+... +. ..+++|+.|+++++
T Consensus 180 -------------~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~---~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 180 -------------KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PS---KGLEHLKELIARNT 236 (239)
T ss_dssp -------------EEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CC---TTCTTCSEEECTTC
T ss_pred -------------CCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccC-Ch---hHhccCceeeccCc
Confidence 44444444442 443333445555 6666666666666533 21 14556666666654
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.4e-20 Score=182.26 Aligned_cols=152 Identities=20% Similarity=0.240 Sum_probs=78.7
Q ss_pred EEccCCccCccCCccccCCCCCCEEEcccccCcccCc----hhccCCC-CCCeeeccCCcccccCCcCccCC-----CCC
Q 037786 88 LDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLP----ASLGNVT-QLAVLSLSFKSFSGHIPPSLSNL-----HQL 157 (565)
Q Consensus 88 L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L 157 (565)
++++++.+++.+|..+...++|++|++++|.+.+..+ .+|.+++ +|++|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4555566655555544444556666666666655554 4555555 66666666666665444444432 666
Q ss_pred CEEEccCccccccCcC-----CcCC-CCCCEEeccCCcccccCCCC----CcC-CCCCCEEEcccccccCCCch----hh
Q 037786 158 TDVDLGSNSFDGQFPD-----IMNL-TRISRLDISNNQLTGSIPSH----GSG-LQNLAVLRLYNNTLSGTIPS----WL 222 (565)
Q Consensus 158 ~~L~l~~~~~~~~~~~-----~~~~-~~L~~L~l~~~~~~~~~~~~----~~~-~~~L~~L~l~~~~l~~~~~~----~l 222 (565)
++|++++|.+....+. +..+ ++|+.|++++|.+++..+.. +.. .++|++|++++|.+...... .+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 6666666665543332 2233 55666666666555332222 112 23566666666555432222 22
Q ss_pred cCCC-CCCEEEccCCccc
Q 037786 223 FTLP-LLRDIDLSDNQLT 239 (565)
Q Consensus 223 ~~~~-~L~~L~l~~~~~~ 239 (565)
...+ +|++|++++|.+.
T Consensus 163 ~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HTSCTTCCEEECTTSCGG
T ss_pred hcCCccccEeeecCCCCc
Confidence 3333 5555555555554
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.80 E-value=4.5e-21 Score=190.55 Aligned_cols=253 Identities=18% Similarity=0.143 Sum_probs=181.3
Q ss_pred chhhhhcCCCccEEEccCCcccccCC----ccccCCCCCCEEecCCCC--CCCccCCCC--------CCCCCCcEEEccC
Q 037786 27 PGTLKNLSSSLTSLSLSYCRIQGEFP----ENIFRLSNLQMVRLKFNS--NLSGVFPRS--------NWTSPLRCLDVSG 92 (565)
Q Consensus 27 ~~~~~~l~~~L~~L~l~~~~i~~~~~----~~~~~l~~L~~L~L~~~~--~~~~~~~~~--------~~~~~L~~L~l~~ 92 (565)
...+..+ ++|++|++++|.++...+ ..+..+++|++|++++|. .+.+.++.. ..+++|++|++++
T Consensus 25 ~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 25 FAVLLED-DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp SHHHHHC-SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHhcC-CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 3456666 778888888888775533 346678888888888762 222222211 3458888888888
Q ss_pred CccCc----cCCccccCCCCCCEEEcccccCcccCchhcc----CC---------CCCCeeeccCCccc-ccCC---cCc
Q 037786 93 TRFSG----QLPDSICNLRHLRELHLSQCNFYGFLPASLG----NV---------TQLAVLSLSFKSFS-GHIP---PSL 151 (565)
Q Consensus 93 ~~~~~----~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~----~l---------~~L~~L~l~~~~~~-~~~~---~~~ 151 (565)
|.+.. .++..+..+++|++|++++|.++...+..+. .+ ++|++|++++|.++ ..++ ..+
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 183 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHH
Confidence 88875 3667788899999999999988654444443 33 89999999999887 2333 356
Q ss_pred cCCCCCCEEEccCccccc-----cCc-CCcCCCCCCEEeccCCccc----ccCCCCCcCCCCCCEEEcccccccCC----
Q 037786 152 SNLHQLTDVDLGSNSFDG-----QFP-DIMNLTRISRLDISNNQLT----GSIPSHGSGLQNLAVLRLYNNTLSGT---- 217 (565)
Q Consensus 152 ~~l~~L~~L~l~~~~~~~-----~~~-~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~l~~~---- 217 (565)
..+++|+.|++++|.+.. ..+ .+..+++|+.|++++|.++ ..++..+..+++|++|++++|.+...
T Consensus 184 ~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred HhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 678899999999998862 334 5788999999999999985 45666778889999999999988754
Q ss_pred CchhhcC--CCCCCEEEccCCcccc-----cCCCC--CCCCCcEEEccCCccccCCc--hhhh-cCCCcCccccc
Q 037786 218 IPSWLFT--LPLLRDIDLSDNQLTG-----HLDAF--PSKSLRKLYLTNNRLHGSIP--SSIF-ELANLTYLSLA 280 (565)
Q Consensus 218 ~~~~l~~--~~~L~~L~l~~~~~~~-----~~~~~--~~~~L~~L~l~~~~~~~~~~--~~~~-~~~~L~~L~l~ 280 (565)
++..+.. +++|+.|++++|.+.. ..... ..++|+.|++++|.+++..+ ..+. .+++++..++.
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~ 338 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELD 338 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEEC
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhh
Confidence 3455533 8999999999999886 22222 35899999999999986653 2222 24455544443
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-18 Score=159.99 Aligned_cols=156 Identities=23% Similarity=0.246 Sum_probs=95.1
Q ss_pred CCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEcc
Q 037786 84 PLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLG 163 (565)
Q Consensus 84 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 163 (565)
.+++|++++|.+++..+..|.++++|++|++++|.+....+..|.++++|++|++++|.++...+..+..+++|++|+++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence 44555555555555555556666666666666666665555556666666666666666665555556666666666666
Q ss_pred CccccccCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCccc
Q 037786 164 SNSFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLT 239 (565)
Q Consensus 164 ~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~ 239 (565)
+|.+....+. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|++.
T Consensus 116 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 116 GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 6666555444 455666666666666666555545666666666666666666555555566666666666666554
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-19 Score=173.92 Aligned_cols=222 Identities=20% Similarity=0.208 Sum_probs=147.2
Q ss_pred CCCcEEEccCCccCccCCc---cccCCCCCCEEEcccccCcccCchhc--cCCCCCCeeeccCCcccccCC----cCccC
Q 037786 83 SPLRCLDVSGTRFSGQLPD---SICNLRHLRELHLSQCNFYGFLPASL--GNVTQLAVLSLSFKSFSGHIP----PSLSN 153 (565)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~---~~~~l~~L~~L~L~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~~ 153 (565)
..++.+.+.++.+...... .+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4566667666655421100 11234567777777777776666666 777777777777777765433 23345
Q ss_pred CCCCCEEEccCccccccCcC-CcCCCCCCEEeccCCccccc----CCCCCcCCCCCCEEEcccccccCCCch----hhcC
Q 037786 154 LHQLTDVDLGSNSFDGQFPD-IMNLTRISRLDISNNQLTGS----IPSHGSGLQNLAVLRLYNNTLSGTIPS----WLFT 224 (565)
Q Consensus 154 l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~----~l~~ 224 (565)
+++|++|++++|.+....+. +..+++|++|++++|++.+. .+..+..+++|++|++++|.++. .+. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 77777778777777665544 67777788888877776531 12334567778888888887752 222 2456
Q ss_pred CCCCCEEEccCCcccccCC-CC-C---CCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCC
Q 037786 225 LPLLRDIDLSDNQLTGHLD-AF-P---SKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNL 299 (565)
Q Consensus 225 ~~~L~~L~l~~~~~~~~~~-~~-~---~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L 299 (565)
+++|++|++++|.+.+..+ .. . .++|++|++++|.++ .+|..+. ++|+.|++++|.+.+. + .+..+++|
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~--~~~~l~~L 296 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-P--QPDELPEV 296 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-C--CTTSCCCC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-c--hhhhCCCc
Confidence 7788888888888776532 11 2 268888888888887 5565553 6888888888888754 2 25777888
Q ss_pred CEEEccCCcccc
Q 037786 300 AALELSHNSLSF 311 (565)
Q Consensus 300 ~~L~l~~~~i~~ 311 (565)
++|++++|++++
T Consensus 297 ~~L~L~~N~l~~ 308 (310)
T 4glp_A 297 DNLTLDGNPFLV 308 (310)
T ss_dssp SCEECSSTTTSC
T ss_pred cEEECcCCCCCC
Confidence 899998888764
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-19 Score=172.42 Aligned_cols=223 Identities=17% Similarity=0.177 Sum_probs=131.3
Q ss_pred CccEEEccCCcccccCCc---cccCCCCCCEEecCCCCCCCccCCCC---CCCCCCcEEEccCCccCccCC----ccccC
Q 037786 36 SLTSLSLSYCRIQGEFPE---NIFRLSNLQMVRLKFNSNLSGVFPRS---NWTSPLRCLDVSGTRFSGQLP----DSICN 105 (565)
Q Consensus 36 ~L~~L~l~~~~i~~~~~~---~~~~l~~L~~L~L~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~----~~~~~ 105 (565)
.++.+.+.++.++..... .+..+++|++|++++| .+.+..+.. ...++|++|++++|.+++..+ ..+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 456666666555421111 1122355677777666 444444333 334667777777776664333 23345
Q ss_pred CCCCCEEEcccccCcccCchhccCCCCCCeeeccCCccccc----CCcCccCCCCCCEEEccCccccccCcC----CcCC
Q 037786 106 LRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGH----IPPSLSNLHQLTDVDLGSNSFDGQFPD----IMNL 177 (565)
Q Consensus 106 l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~ 177 (565)
+++|++|++++|.+....+..|.++++|++|++++|.+.+. .+..+..+++|++|++++|.+...... +..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 66777777777777666666667777777777777765421 122335666777777777766532221 3456
Q ss_pred CCCCEEeccCCcccccCCCCCcCC---CCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCCCCCCCcEEE
Q 037786 178 TRISRLDISNNQLTGSIPSHGSGL---QNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLY 254 (565)
Q Consensus 178 ~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~ 254 (565)
++|++|++++|.+.+..|..+..+ ++|++|++++|.++ ..+..+. ++|+.|++++|++.+.......++|+.|+
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~ 300 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLT 300 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEE
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEE
Confidence 777777777777766555555444 57777777777776 3343332 57777777777777544444556777777
Q ss_pred ccCCcccc
Q 037786 255 LTNNRLHG 262 (565)
Q Consensus 255 l~~~~~~~ 262 (565)
+++|.+++
T Consensus 301 L~~N~l~~ 308 (310)
T 4glp_A 301 LDGNPFLV 308 (310)
T ss_dssp CSSTTTSC
T ss_pred CcCCCCCC
Confidence 77776653
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-20 Score=184.05 Aligned_cols=224 Identities=17% Similarity=0.172 Sum_probs=140.5
Q ss_pred EEEcccccCcccCchhccCCCCCCeeeccCCcccccCC----cCccCCC-CCCEEEccCccccccCcC-CcCC-----CC
Q 037786 111 ELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIP----PSLSNLH-QLTDVDLGSNSFDGQFPD-IMNL-----TR 179 (565)
Q Consensus 111 ~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~-~~~~-----~~ 179 (565)
.+.++.+.+++..+..+...++|++|++++|.+++..+ .++..++ +|++|++++|.+...... +..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35678888887777777777779999999999886655 6677788 899999999988765443 3332 88
Q ss_pred CCEEeccCCcccccCCCC----CcCC-CCCCEEEcccccccCCCchhhc----C-CCCCCEEEccCCcccccCCCC----
Q 037786 180 ISRLDISNNQLTGSIPSH----GSGL-QNLAVLRLYNNTLSGTIPSWLF----T-LPLLRDIDLSDNQLTGHLDAF---- 245 (565)
Q Consensus 180 L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~l~~~~~~~l~----~-~~~L~~L~l~~~~~~~~~~~~---- 245 (565)
|++|++++|.+++..+.. +..+ ++|++|++++|.+....+..+. . .++|++|++++|.+.+.....
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 888888888887554432 3334 6888888888888755544432 3 357888888888776422111
Q ss_pred ---CCCCCcEEEccCCccccCCchhhh----cC-CCcCccccccccccCccC---hHhhhc-CCCCCEEEccCCcccccc
Q 037786 246 ---PSKSLRKLYLTNNRLHGSIPSSIF----EL-ANLTYLSLASNNFSGIVE---PYMLAK-LVNLAALELSHNSLSFGT 313 (565)
Q Consensus 246 ---~~~~L~~L~l~~~~~~~~~~~~~~----~~-~~L~~L~l~~n~~~~~~~---~~~l~~-~~~L~~L~l~~~~i~~~~ 313 (565)
..++|++|++++|.+++..+..+. .+ ++|+.|++++|.+.+... +..+.. .++|++|++++|.++...
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 123667777777766654443332 33 366666666666654211 112223 346666666666665433
Q ss_pred C---CcccCCCCCccEEEcCCCCC
Q 037786 314 T---SKVNSSFPQIFILSLSACNI 334 (565)
Q Consensus 314 ~---~~~~~~~~~L~~L~l~~~~l 334 (565)
. ......+++|+.|++++|.+
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l 265 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIV 265 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHH
T ss_pred HHHHHHHHhcCCCccEEEeccCCc
Confidence 3 12234455566666666553
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.79 E-value=6e-18 Score=157.13 Aligned_cols=178 Identities=17% Similarity=0.201 Sum_probs=113.7
Q ss_pred CcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEcc
Q 037786 12 LQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVS 91 (565)
Q Consensus 12 L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~ 91 (565)
.++++++++.+..++. .+++++++|++++|.+++..+..+..+++|++|++++
T Consensus 16 ~~~l~~~~~~l~~~p~----~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~----------------------- 68 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPS----GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDY----------------------- 68 (251)
T ss_dssp GTEEECTTCCCSSCCS----CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-----------------------
T ss_pred CeEEecCCCCccccCC----CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCC-----------------------
Confidence 4556666655554432 1234566666666666555555555555555555554
Q ss_pred CCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccC
Q 037786 92 GTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQF 171 (565)
Q Consensus 92 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 171 (565)
|.+++..+..|..+++|++|++++|.++...+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+....
T Consensus 69 -n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 147 (251)
T 3m19_A 69 -NQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147 (251)
T ss_dssp -SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred -CcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC
Confidence 4455445555666677777777777766666666667777777777777776555555666777777777777776655
Q ss_pred cC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCC
Q 037786 172 PD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGT 217 (565)
Q Consensus 172 ~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 217 (565)
+. +..+++|+.|++++|++.+..+..+..+++|+.|++++|.+...
T Consensus 148 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 53 66777777777777777766666677777777788777777543
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.79 E-value=8.3e-21 Score=188.63 Aligned_cols=245 Identities=18% Similarity=0.169 Sum_probs=121.7
Q ss_pred cCCccccCCCCCCEEEcccccCcccCch----hccCCCCCCeeeccCCcc---cccCCcCc-------cCCCCCCEEEcc
Q 037786 98 QLPDSICNLRHLRELHLSQCNFYGFLPA----SLGNVTQLAVLSLSFKSF---SGHIPPSL-------SNLHQLTDVDLG 163 (565)
Q Consensus 98 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~---~~~~~~~~-------~~l~~L~~L~l~ 163 (565)
.++..+..+++|++|++++|.+....+. .+..+++|++|++++|.+ .+.+|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 4455666677777777777776654333 355677777777777533 23333333 466677777777
Q ss_pred Cccccc-----cCcCCcCCCCCCEEeccCCcccccCCCCC----cCC---------CCCCEEEcccccccC-CCc---hh
Q 037786 164 SNSFDG-----QFPDIMNLTRISRLDISNNQLTGSIPSHG----SGL---------QNLAVLRLYNNTLSG-TIP---SW 221 (565)
Q Consensus 164 ~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~---------~~L~~L~l~~~~l~~-~~~---~~ 221 (565)
+|.+.. ....+..+++|++|++++|.++...+..+ ..+ ++|++|++++|.+.. ..+ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 776654 11225556666666666666543222222 122 566666666666542 122 23
Q ss_pred hcCCCCCCEEEccCCcccccCCCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccC----ccChHhhhcCC
Q 037786 222 LFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSG----IVEPYMLAKLV 297 (565)
Q Consensus 222 l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~----~~~~~~l~~~~ 297 (565)
+..+++|+.|++++|.+..... ....+..+..+++|+.|++++|.+.. .+ +..+..++
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~-----------------~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l-~~~l~~~~ 244 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGI-----------------EHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL-AIALKSWP 244 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHH-----------------HHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH-HHHGGGCT
T ss_pred HHhCCCcCEEECcCCCCCHhHH-----------------HHHHHHHhhcCCCccEEECcCCCCCcHHHHHH-HHHHccCC
Confidence 4455566666666665542100 00011133344444444444444421 11 12344445
Q ss_pred CCCEEEccCCccccccCCcc---c--CCCCCccEEEcCCCCCCC-----CCchh-hc-cccceEeccCCcCcccC
Q 037786 298 NLAALELSHNSLSFGTTSKV---N--SSFPQIFILSLSACNISA-----FPSFL-RS-LELAYLDLSENNIDGQI 360 (565)
Q Consensus 298 ~L~~L~l~~~~i~~~~~~~~---~--~~~~~L~~L~l~~~~l~~-----l~~~~-~~-~~L~~L~l~~n~l~~~~ 360 (565)
+|++|++++|.++......+ . ..+++|+.|++++|.++. ++..+ .. ++|+.|++++|++++..
T Consensus 245 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 55555555555443211111 0 124555555555555553 44433 21 35666666666665433
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.6e-18 Score=176.51 Aligned_cols=187 Identities=24% Similarity=0.341 Sum_probs=139.8
Q ss_pred CCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEE
Q 037786 297 VNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLD 376 (565)
Q Consensus 297 ~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ 376 (565)
.+++.|++++|.++. .+..+ +++|+.|++++|.++.+| ....+|+.|++++|.+++ +|. +. .+|+.|+
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l---~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~-ip~-l~----~~L~~L~ 126 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL---PPQITVLEITQNALISLP--ELPASLEYLDACDNRLST-LPE-LP----ASLKHLD 126 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC---CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC-CCC-CC----TTCCEEE
T ss_pred CCccEEEeCCCCCCc-cCHhH---cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC-cch-hh----cCCCEEE
Confidence 389999999998876 33333 378999999999999888 223489999999999884 666 32 2899999
Q ss_pred cCCCccCCccCCCCCCCCeEEcCCCcccccCCCCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEe
Q 037786 377 LSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLN 456 (565)
Q Consensus 377 ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~ 456 (565)
+++|.++.++. .+++|+.|++++|.+.+ +|..+++|++|++++|++++ +|. +. ++|++|+
T Consensus 127 Ls~N~l~~lp~-~l~~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N~L~~-lp~-l~----------------~~L~~L~ 186 (571)
T 3cvr_A 127 VDNNQLTMLPE-LPALLEYINADNNQLTM-LPELPTSLEVLSVRNNQLTF-LPE-LP----------------ESLEALD 186 (571)
T ss_dssp CCSSCCSCCCC-CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSC-CCC-CC----------------TTCCEEE
T ss_pred CCCCcCCCCCC-cCccccEEeCCCCccCc-CCCcCCCcCEEECCCCCCCC-cch-hh----------------CCCCEEE
Confidence 99999988877 77889999999998886 45577888888888888875 332 21 6888888
Q ss_pred CcCCCCCCCcccCCCcc-------cEEECCCCcccccCCC---CCCCCcEeeccCceeeeccchhhhcCCC
Q 037786 457 LSHNFITKMKQISWKNL-------GYLDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEIIHSICDIIA 517 (565)
Q Consensus 457 l~~n~l~~~~~~~~~~L-------~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~ 517 (565)
+++|.|+.+|. ...+| +.|++++|.++. +|. .+++|+.|++++|.+++..|..+..++.
T Consensus 187 Ls~N~L~~lp~-~~~~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 187 VSTNLLESLPA-VPVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CCSSCCSSCCC-CC--------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred CcCCCCCchhh-HHHhhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 88888887765 33366 788888887775 343 5777888888888887777777766543
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.5e-18 Score=154.95 Aligned_cols=156 Identities=20% Similarity=0.230 Sum_probs=123.5
Q ss_pred cEEEcCCCccCCccCCCCCCCCeEEcCCCcccccCCC---CCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCC
Q 037786 373 SFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPV---PPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGK 449 (565)
Q Consensus 373 ~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~---~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~ 449 (565)
+.++++++.++.++....++++.|++++|.+....+. .+++|++|++++|++++..+..+..+
T Consensus 14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l-------------- 79 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL-------------- 79 (220)
T ss_dssp TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTC--------------
T ss_pred CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCC--------------
Confidence 4566677777776665556777777777777755442 36788888888888888778888877
Q ss_pred CCCcEEeCcCCCCCCCcc---cCCCcccEEECCCCcccccCCC---CCCCCcEeeccCceeeeccchhhhcCCCCCEEeC
Q 037786 450 DSLSYLNLSHNFITKMKQ---ISWKNLGYLDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEIIHSICDIIALDVLDL 523 (565)
Q Consensus 450 ~~L~~L~l~~n~l~~~~~---~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l 523 (565)
++|++|++++|.++.+|. ..+++|+.|++++|.+++..+. .+++|+.|++++|.+++..+..|..+++|+.|++
T Consensus 80 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 80 RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEe
Confidence 899999999999998854 5688999999999998875443 7789999999999999888888999999999999
Q ss_pred CCCcCcccCCCCCCCCCCCcccccCCCCcc
Q 037786 524 SNNRLSGTIPKCIGNFSPWCQTKWPSRWSA 553 (565)
Q Consensus 524 ~~n~~~~~~p~~l~~l~~L~~l~~~~~~~~ 553 (565)
++|++.|. |.+.|...|+.
T Consensus 160 ~~N~~~c~-----------c~l~~l~~~l~ 178 (220)
T 2v9t_B 160 AQNPFICD-----------CHLKWLADYLH 178 (220)
T ss_dssp CSSCEECS-----------GGGHHHHHHHH
T ss_pred CCCCcCCC-----------CccHHHHHHHH
Confidence 99999876 56666655543
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.4e-18 Score=154.27 Aligned_cols=145 Identities=20% Similarity=0.161 Sum_probs=110.7
Q ss_pred cEEEcCCCccCCccCCCCCCCCeEEcCCCcccccCCC----CCCCCcEEEccccccCccchhhhhhcCCCCCCccccccC
Q 037786 373 SFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPV----PPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIG 448 (565)
Q Consensus 373 ~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~----~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~ 448 (565)
+.+++++|.++.++....+.+++|++++|.+.+..+. .+++|++|++++|++++..+..+..+
T Consensus 14 ~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l------------- 80 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGA------------- 80 (220)
T ss_dssp TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTC-------------
T ss_pred CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCC-------------
Confidence 4666666666666655555667777777777665432 37788888888888887666677776
Q ss_pred CCCCcEEeCcCCCCCCC-cc--cCCCcccEEECCCCcccccCCC---CCCCCcEeeccCceeeeccchhhhcCCCCCEEe
Q 037786 449 KDSLSYLNLSHNFITKM-KQ--ISWKNLGYLDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEIIHSICDIIALDVLD 522 (565)
Q Consensus 449 ~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~ 522 (565)
++|++|++++|.++.+ +. ..+++|+.|++++|.+++..+. .+++|++|++++|.+++..+..|..+++|+.|+
T Consensus 81 -~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 81 -SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp -TTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred -CCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE
Confidence 8888888888888888 32 6678888888888888765443 678888999999998888788889999999999
Q ss_pred CCCCcCccc
Q 037786 523 LSNNRLSGT 531 (565)
Q Consensus 523 l~~n~~~~~ 531 (565)
+++|++.|.
T Consensus 160 L~~N~l~c~ 168 (220)
T 2v70_A 160 LLANPFNCN 168 (220)
T ss_dssp CCSCCEECS
T ss_pred ecCcCCcCC
Confidence 999998876
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-17 Score=148.68 Aligned_cols=178 Identities=18% Similarity=0.148 Sum_probs=105.7
Q ss_pred cEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCC-CCCCCCcEEEcc
Q 037786 13 QLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRS-NWTSPLRCLDVS 91 (565)
Q Consensus 13 ~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~-~~~~~L~~L~l~ 91 (565)
+.++.+++.+..+.. ..++++++|++++|+++...+..+..+++|++|++++| .+....+.. ...++|++|+++
T Consensus 10 ~~v~c~~~~l~~~p~----~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 10 TTVECYSQGRTSVPT----GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TEEECCSSCCSSCCS----CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCCccCCCC----CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECC
Confidence 467777777665543 22467888888888887666666777888888888777 444333322 233666666666
Q ss_pred CCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccC
Q 037786 92 GTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQF 171 (565)
Q Consensus 92 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 171 (565)
+|.++...+..|..+++|++|++++|.++...+..|.++++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--- 161 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--- 161 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC---
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee---
Confidence 66666444444556666666666666665555555566666666666666665444444555666666666665433
Q ss_pred cCCcCCCCCCEEeccCCcccccCCCCCcCC
Q 037786 172 PDIMNLTRISRLDISNNQLTGSIPSHGSGL 201 (565)
Q Consensus 172 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 201 (565)
+.++.|+.+++..|.+++.+|..++.+
T Consensus 162 ---~~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 162 ---CTCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp ---CCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred ---cCCCCHHHHHHHHHhCCceeeccCccc
Confidence 234455555555555555555544433
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.75 E-value=8e-18 Score=164.44 Aligned_cols=236 Identities=13% Similarity=0.079 Sum_probs=152.0
Q ss_pred cEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCC--CCCCCCCcE-EE
Q 037786 13 QLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPR--SNWTSPLRC-LD 89 (565)
Q Consensus 13 ~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~--~~~~~~L~~-L~ 89 (565)
++++.++++++.++. .+|+++++|+|++|+|+...+.+|.++++|++|+|++| ...+.++. +..++++++ +.
T Consensus 12 ~~v~C~~~~Lt~iP~----~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 12 RVFLCQESKVTEIPS----DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN-DVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp TEEEEESTTCCSCCT----TCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECC-TTCCEECTTSBCSCTTCCEEEE
T ss_pred CEEEecCCCCCccCc----CcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCC-CCCCccChhHhhcchhhhhhhc
Confidence 678888888876643 34678999999999999766678999999999999998 44343332 233455554 45
Q ss_pred ccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccC-CcccccCCcCccCC-CCCCEEEccCccc
Q 037786 90 VSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSF-KSFSGHIPPSLSNL-HQLTDVDLGSNSF 167 (565)
Q Consensus 90 l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l-~~L~~L~l~~~~~ 167 (565)
+.+|.++...|..|..+++|++|++++|.+....+..+....++..+++.+ +.+....+..|..+ ..++.|++++|.+
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 556777766677778888888888888887766666666666777777755 34554444555555 3567777777777
Q ss_pred cccCcCCcCCCCCCEEeccC-CcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcc-cccCCCC
Q 037786 168 DGQFPDIMNLTRISRLDISN-NQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQL-TGHLDAF 245 (565)
Q Consensus 168 ~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~-~~~~~~~ 245 (565)
..+.+......+|+.+++.+ |.++.+.+..|..+++|++|++++|.++...+.. +.+|+.|.+.++.- ...+...
T Consensus 167 ~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~l~ 243 (350)
T 4ay9_X 167 QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPTLE 243 (350)
T ss_dssp CEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCCTT
T ss_pred cCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCCch
Confidence 76666655566677777764 4555444455677777777777777776433322 34445555444322 2222222
Q ss_pred CCCCCcEEEcc
Q 037786 246 PSKSLRKLYLT 256 (565)
Q Consensus 246 ~~~~L~~L~l~ 256 (565)
..++|+.+++.
T Consensus 244 ~l~~L~~l~l~ 254 (350)
T 4ay9_X 244 KLVALMEASLT 254 (350)
T ss_dssp TCCSCCEEECS
T ss_pred hCcChhhCcCC
Confidence 44455555554
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-17 Score=170.37 Aligned_cols=190 Identities=26% Similarity=0.320 Sum_probs=159.4
Q ss_pred CCccEEEcCCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCCCCCCCCeEEcCCC
Q 037786 322 PQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSN 401 (565)
Q Consensus 322 ~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n 401 (565)
.+++.|++++|.++.+|..+. .+|+.|++++|.++ .+| . .+++|+.|++++|.++.++. ...+|++|++++|
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~-~~L~~L~Ls~N~l~-~ip-~----~l~~L~~L~Ls~N~l~~ip~-l~~~L~~L~Ls~N 130 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP-PQITVLEITQNALI-SLP-E----LPASLEYLDACDNRLSTLPE-LPASLKHLDVDNN 130 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC-TTCSEEECCSSCCS-CCC-C----CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSS
T ss_pred CCccEEEeCCCCCCccCHhHc-CCCCEEECcCCCCc-ccc-c----ccCCCCEEEccCCCCCCcch-hhcCCCEEECCCC
Confidence 379999999999999887553 58999999999999 777 2 46899999999999999887 4459999999999
Q ss_pred cccccCCCCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcccCCCcccEEECCCC
Q 037786 402 LLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSN 481 (565)
Q Consensus 402 ~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~ls~n 481 (565)
++.+. |..+++|++|++++|++++ ++. .+ ++|++|++++|.++.+|. ..++|+.|++++|
T Consensus 131 ~l~~l-p~~l~~L~~L~Ls~N~l~~-lp~---~l--------------~~L~~L~Ls~N~L~~lp~-l~~~L~~L~Ls~N 190 (571)
T 3cvr_A 131 QLTML-PELPALLEYINADNNQLTM-LPE---LP--------------TSLEVLSVRNNQLTFLPE-LPESLEALDVSTN 190 (571)
T ss_dssp CCSCC-CCCCTTCCEEECCSSCCSC-CCC---CC--------------TTCCEEECCSSCCSCCCC-CCTTCCEEECCSS
T ss_pred cCCCC-CCcCccccEEeCCCCccCc-CCC---cC--------------CCcCEEECCCCCCCCcch-hhCCCCEEECcCC
Confidence 99984 4489999999999999986 333 23 899999999999999966 3389999999999
Q ss_pred cccccCCCCCCCC-------cEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCCCCCCCC
Q 037786 482 LLQGPLLVPPSSL-------RVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSP 541 (565)
Q Consensus 482 ~l~~~~~~~~~~L-------~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l~~l~~ 541 (565)
.++. +|....+| +.|++++|.++ .+|..+..+++|+.|+|++|++.+.+|+.+..+++
T Consensus 191 ~L~~-lp~~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 191 LLES-LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CCSS-CCCCC--------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred CCCc-hhhHHHhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 9985 44444477 99999999999 47777888999999999999999888888766544
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.74 E-value=5.4e-17 Score=158.55 Aligned_cols=218 Identities=21% Similarity=0.171 Sum_probs=144.2
Q ss_pred CCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCC---CCCCCcE-EEccCCccccCCchhhhcCCCcCccc
Q 037786 203 NLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF---PSKSLRK-LYLTNNRLHGSIPSSIFELANLTYLS 278 (565)
Q Consensus 203 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~-L~l~~~~~~~~~~~~~~~~~~L~~L~ 278 (565)
++++|++++|.++...+..|.++++|++|++++|.+.+..+.. ..+++++ +.+..|.++...+..+..+++|+.|+
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence 4555555555554333344555555555555555543322211 2333333 44445666655566777788888888
Q ss_pred cccccccCccChHhhhcCCCCCEEEccCC-ccccccCCcccCCCCCccEEEcCCCCCCCCCchhhcc-ccceEeccCCcC
Q 037786 279 LASNNFSGIVEPYMLAKLVNLAALELSHN-SLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSL-ELAYLDLSENNI 356 (565)
Q Consensus 279 l~~n~~~~~~~~~~l~~~~~L~~L~l~~~-~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~l 356 (565)
+++|.+.... +..+.....+..+++.++ .+.......+......++.|++++|+++.++..+... +++++++++++.
T Consensus 111 l~~n~l~~~~-~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~ 189 (350)
T 4ay9_X 111 ISNTGIKHLP-DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN 189 (350)
T ss_dssp EEEECCSSCC-CCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTT
T ss_pred ccccccccCC-chhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCc
Confidence 8888887543 334455566777888664 5554444444333456889999999999887765444 899999986444
Q ss_pred cccCChhhhhhCCCCccEEEcCCCccCCccCCCCCCCCeEEcCCCcccccCCC--CCCCCcEEEcccc
Q 037786 357 DGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPV--PPPRLQFLLASNN 422 (565)
Q Consensus 357 ~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~--~~~~L~~L~l~~n 422 (565)
.+.+|...+. ++++|+.|++++|+++.++...+.+|++|.+.++......|. .+++|+.++++++
T Consensus 190 l~~i~~~~f~-~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 190 LEELPNDVFH-GASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYP 256 (350)
T ss_dssp CCCCCTTTTT-TEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCH
T ss_pred ccCCCHHHhc-cCcccchhhcCCCCcCccChhhhccchHhhhccCCCcCcCCCchhCcChhhCcCCCC
Confidence 4477766544 678999999999999999998899999999988766656664 3888999998765
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-17 Score=156.68 Aligned_cols=166 Identities=21% Similarity=0.237 Sum_probs=92.3
Q ss_pred CCCCccEEEcCCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCC-CCCCCCeEEc
Q 037786 320 SFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI-PWKNLKYLKL 398 (565)
Q Consensus 320 ~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~l 398 (565)
.+++++.|++++|.+..++.+....+|++|++++|.+++ ++. +. .+++|+.|++++|.++.++.. .+++|++|++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~-~~~-l~--~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L 119 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-IKP-LA--NLKNLGWLFLDENKVKDLSSLKDLKKLKSLSL 119 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG-GT--TCTTCCEEECCSSCCCCGGGGTTCTTCCEEEC
T ss_pred hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCC-Ccc-cc--cCCCCCEEECCCCcCCCChhhccCCCCCEEEC
Confidence 456777777777777776654444477777777777763 332 22 456777777777777665542 5556666666
Q ss_pred CCCcccccCC-CCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cccCCCcccEE
Q 037786 399 QSNLLQGPLP-VPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQISWKNLGYL 476 (565)
Q Consensus 399 ~~n~~~~~~~-~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~L~~L 476 (565)
++|++.+... ..+++|++|++++|++++. ..+..+ ++|++|++++|.+.++ +...+++|+.|
T Consensus 120 ~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l--------------~~L~~L~L~~N~l~~~~~l~~l~~L~~L 183 (291)
T 1h6t_A 120 EHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRL--------------TKLDTLSLEDNQISDIVPLAGLTKLQNL 183 (291)
T ss_dssp TTSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGC--------------TTCSEEECCSSCCCCCGGGTTCTTCCEE
T ss_pred CCCcCCCChhhcCCCCCCEEEccCCcCCcc--hhhccC--------------CCCCEEEccCCccccchhhcCCCccCEE
Confidence 6666554211 1155555555555555543 334444 5555555555555555 33445555555
Q ss_pred ECCCCcccccC-CCCCCCCcEeeccCceee
Q 037786 477 DLRSNLLQGPL-LVPPSSLRVILILNNQFT 505 (565)
Q Consensus 477 ~ls~n~l~~~~-~~~~~~L~~L~l~~n~~~ 505 (565)
++++|.+++.. ...+++|+.|++++|+++
T Consensus 184 ~L~~N~i~~l~~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 184 YLSKNHISDLRALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp ECCSSCCCBCGGGTTCTTCSEEEEEEEEEE
T ss_pred ECCCCcCCCChhhccCCCCCEEECcCCccc
Confidence 55555554311 114445555555555544
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.6e-17 Score=146.52 Aligned_cols=178 Identities=21% Similarity=0.206 Sum_probs=118.3
Q ss_pred cEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCc
Q 037786 86 RCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSN 165 (565)
Q Consensus 86 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (565)
+.++++++.++ .+|..+ .++|++|++++|.++...+..|.++++|++|++++|.+....+..+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 34555566555 334333 356777777777777666666677777777777777777555556677777777777777
Q ss_pred cccccCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCC
Q 037786 166 SFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDA 244 (565)
Q Consensus 166 ~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 244 (565)
.+....+. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence 77655554 5677777777777777776555566777777888887777775555566777777777777776553
Q ss_pred CCCCCCcEEEccCCccccCCchhhhcC
Q 037786 245 FPSKSLRKLYLTNNRLHGSIPSSIFEL 271 (565)
Q Consensus 245 ~~~~~L~~L~l~~~~~~~~~~~~~~~~ 271 (565)
.++.++.|+++.+.+++.+|..+..+
T Consensus 163 -~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 163 -TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp -CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred -CCCCHHHHHHHHHhCCceeeccCccc
Confidence 23456666666666666666555443
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.71 E-value=7e-17 Score=153.12 Aligned_cols=186 Identities=24% Similarity=0.331 Sum_probs=141.2
Q ss_pred EcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCcc
Q 037786 16 FLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRF 95 (565)
Q Consensus 16 ~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 95 (565)
.+....+.+.. .+..+ ++|++|++++|.++. . ..+..+++|++|++++| .+.+..+ +..+++|++|++++|.+
T Consensus 30 ~l~~~~~~~~~--~~~~l-~~L~~L~l~~~~i~~-~-~~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 30 NLKKKSVTDAV--TQNEL-NSIDQIIANNSDIKS-V-QGIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HTTCSCTTSEE--CHHHH-HTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred HhcCCCccccc--chhhc-CcccEEEccCCCccc-C-hhHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCcC
Confidence 44555554432 24455 778888888888873 3 34777888888888887 4554433 55558888888888888
Q ss_pred CccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcCCc
Q 037786 96 SGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIM 175 (565)
Q Consensus 96 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 175 (565)
++ + ..+..+++|++|++++|.+... ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+....+ +.
T Consensus 103 ~~-~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~ 175 (291)
T 1h6t_A 103 KD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LA 175 (291)
T ss_dssp CC-G-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GT
T ss_pred CC-C-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hc
Confidence 74 3 3488889999999999988764 5678889999999999988854 678888999999999998876655 88
Q ss_pred CCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCC
Q 037786 176 NLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGT 217 (565)
Q Consensus 176 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 217 (565)
.+++|+.|++++|.+.+. + .+..+++|+.|++++|.+...
T Consensus 176 ~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 176 GLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp TCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECC
T ss_pred CCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCC
Confidence 889999999999988854 3 378889999999999988643
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-16 Score=164.22 Aligned_cols=169 Identities=20% Similarity=0.225 Sum_probs=100.1
Q ss_pred CCCCCccEEEcCCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCC-CCCCCCeEE
Q 037786 319 SSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI-PWKNLKYLK 397 (565)
Q Consensus 319 ~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~ 397 (565)
..++.|+.|++++|.+..++.+....+|+.|++++|.+.+. +. +. .+++|+.|+|++|.++.++.. .+++|+.|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~-~~-l~--~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI-KP-LT--NLKNLGWLFLDENKIKDLSSLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCC-GG-GG--GCTTCCEEECCSSCCCCCTTSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCC-hh-hc--cCCCCCEEECcCCCCCCChhhccCCCCCEEE
Confidence 34567777777777777776554445777777777777743 32 22 467777777777777766543 556666666
Q ss_pred cCCCcccccCCC-CCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cccCCCcccE
Q 037786 398 LQSNLLQGPLPV-PPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQISWKNLGY 475 (565)
Q Consensus 398 l~~n~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~L~~ 475 (565)
+++|++.+.... .+++|+.|++++|++++. ..+..+ ++|++|+|++|.+.++ |...+++|+.
T Consensus 116 Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l--------------~~L~~L~Ls~N~l~~~~~l~~l~~L~~ 179 (605)
T 1m9s_A 116 LEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRL--------------TKLDTLSLEDNQISDIVPLAGLTKLQN 179 (605)
T ss_dssp CTTSCCCCCGGGGGCTTCSEEECCSSCCCCC--GGGGSC--------------TTCSEEECCSSCCCCCGGGTTCTTCCE
T ss_pred ecCCCCCCCccccCCCccCEEECCCCccCCc--hhhccc--------------CCCCEEECcCCcCCCchhhccCCCCCE
Confidence 666666542111 156666666666666543 344444 5666666666666665 4355556666
Q ss_pred EECCCCcccccC-CCCCCCCcEeeccCceeeec
Q 037786 476 LDLRSNLLQGPL-LVPPSSLRVILILNNQFTGE 507 (565)
Q Consensus 476 L~ls~n~l~~~~-~~~~~~L~~L~l~~n~~~~~ 507 (565)
|++++|.+++.. ...+++|+.|++++|+++..
T Consensus 180 L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 180 LYLSKNHISDLRALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp EECCSSCCCBCGGGTTCTTCSEEECCSEEEECC
T ss_pred EECcCCCCCCChHHccCCCCCEEEccCCcCcCC
Confidence 666666555421 11555556666666555543
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.70 E-value=3.4e-16 Score=141.80 Aligned_cols=151 Identities=20% Similarity=0.286 Sum_probs=97.2
Q ss_pred cEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCc
Q 037786 86 RCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSN 165 (565)
Q Consensus 86 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (565)
+.++++++.++ .+|..+. +++++|++++|.+....+..|..+++|+.|++++|.+....+.+|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 34555555555 3444332 46666666666666665556666666666666666666656666666666777777666
Q ss_pred cccccCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCccc
Q 037786 166 SFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLT 239 (565)
Q Consensus 166 ~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~ 239 (565)
.+....+. +..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+....+..+..+++|+.|++++|++.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 66655544 556666777777777666666666666777777777777766555556666666777777666654
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-16 Score=163.86 Aligned_cols=171 Identities=25% Similarity=0.348 Sum_probs=92.7
Q ss_pred hhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCC
Q 037786 31 KNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLR 110 (565)
Q Consensus 31 ~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 110 (565)
..+ ++|+.|++++|.+.. ++ .+..+++|+.|+|++| .+.+..+ +..+++|++|++++|.+.+ ++ .+..+++|+
T Consensus 40 ~~L-~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~ 112 (605)
T 1m9s_A 40 NEL-NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLK 112 (605)
T ss_dssp HHH-TTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCC
T ss_pred hcC-CCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCC
Confidence 344 555555665555542 22 3555556666666555 3333222 3334556666666665553 22 455566666
Q ss_pred EEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcCCcCCCCCCEEeccCCcc
Q 037786 111 ELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQL 190 (565)
Q Consensus 111 ~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 190 (565)
+|+|++|.+... ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+....+ +..+++|+.|++++|.+
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCC
Confidence 666666655542 3455566666666666655532 445556666666666666554444 55566666666666655
Q ss_pred cccCCCCCcCCCCCCEEEccccccc
Q 037786 191 TGSIPSHGSGLQNLAVLRLYNNTLS 215 (565)
Q Consensus 191 ~~~~~~~~~~~~~L~~L~l~~~~l~ 215 (565)
.+. ..+..+++|+.|++++|.+.
T Consensus 188 ~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 188 SDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CBC--GGGTTCTTCSEEECCSEEEE
T ss_pred CCC--hHHccCCCCCEEEccCCcCc
Confidence 532 23555566666666666554
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.1e-16 Score=139.62 Aligned_cols=149 Identities=15% Similarity=0.244 Sum_probs=73.7
Q ss_pred CCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEc
Q 037786 35 SSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHL 114 (565)
Q Consensus 35 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 114 (565)
++|++|++++|.++ ..+ .+..+++|++|++++| ... .++.+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n-~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNI-HAT-NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESC-CCS-CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCC-CCC-cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 55666666666665 333 4556666666666655 221 2223333355555555555555444445555555555555
Q ss_pred ccccCcccCchhccCCCCCCeeeccCCc-ccccCCcCccCCCCCCEEEccCccccccCcCCcCCCCCCEEeccCCcc
Q 037786 115 SQCNFYGFLPASLGNVTQLAVLSLSFKS-FSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQL 190 (565)
Q Consensus 115 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 190 (565)
++|.+++..+..+..+++|++|++++|. ++ .++ .+..+++|+.|++++|.+.... .+..+++|+.|++++|++
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCccc
Confidence 5555554444555555555555555554 33 222 3444555555555555444322 344444444444444443
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-15 Score=138.53 Aligned_cols=150 Identities=20% Similarity=0.293 Sum_probs=91.5
Q ss_pred EEEccCCccCccCCccccCCCCCCEEEcccccCcccCc-hhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCc
Q 037786 87 CLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLP-ASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSN 165 (565)
Q Consensus 87 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (565)
.++++++.++ .+|..+ .+.+++|++++|.++...+ ..|.++++|++|++++|.+++..+.+|..+++|++|++++|
T Consensus 15 ~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 5555555555 344433 2344666666666655433 34566666666666666666555556666666666666666
Q ss_pred cccccCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCccc
Q 037786 166 SFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLT 239 (565)
Q Consensus 166 ~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~ 239 (565)
.+....+. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|++.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 66655544 556666666666666666555666666666666666666666555566666666666666666655
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.3e-15 Score=136.26 Aligned_cols=133 Identities=20% Similarity=0.232 Sum_probs=62.7
Q ss_pred CCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEc
Q 037786 83 SPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDL 162 (565)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 162 (565)
++|++|++++|.+++..+..|..+++|++|++++|.+....+..|..+++|+.|++++|.++...+..|..+++|+.|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 33444444444444444444445555555555555544444444445555555555555554433334444555555555
Q ss_pred cCccccccCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEccccccc
Q 037786 163 GSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLS 215 (565)
Q Consensus 163 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 215 (565)
++|.+..++..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 120 s~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 120 CCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 55554433333444444555555554444333334444444444444444443
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.1e-16 Score=137.27 Aligned_cols=153 Identities=16% Similarity=0.269 Sum_probs=128.6
Q ss_pred hCCCCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCc-cCCCCCCCCCC
Q 037786 7 QNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSG-VFPRSNWTSPL 85 (565)
Q Consensus 7 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~-~~~~~~~~~~L 85 (565)
+.+++|++|++++|.+.... .+..+ ++|++|++++|.++ .+..+..+++|++|++++| .+.+ ....+..+++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~--~l~~l-~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT--GIEYA-HNIKDLTINNIHAT--NYNPISGLSNLERLRIMGK-DVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT--TGGGC-TTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECT-TCBGGGSCCCTTCTTC
T ss_pred hhcCCccEEeccCCCccChH--HHhcC-CCCCEEEccCCCCC--cchhhhcCCCCCEEEeECC-ccCcccChhhcCCCCC
Confidence 56789999999999998654 57777 89999999999876 3457899999999999999 5554 45566666999
Q ss_pred cEEEccCCccCccCCccccCCCCCCEEEccccc-CcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccC
Q 037786 86 RCLDVSGTRFSGQLPDSICNLRHLRELHLSQCN-FYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGS 164 (565)
Q Consensus 86 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (565)
++|++++|.+++..+..+..+++|++|++++|. ++.. + .+..+++|+.|++++|.+.+ ++ .+..+++|+.|++++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECB
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeC
Confidence 999999999998788899999999999999998 6654 3 68999999999999999985 33 788999999999999
Q ss_pred ccccc
Q 037786 165 NSFDG 169 (565)
Q Consensus 165 ~~~~~ 169 (565)
|++..
T Consensus 191 N~i~~ 195 (197)
T 4ezg_A 191 QTIGG 195 (197)
T ss_dssp C----
T ss_pred cccCC
Confidence 98753
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.8e-15 Score=136.72 Aligned_cols=154 Identities=22% Similarity=0.218 Sum_probs=128.3
Q ss_pred CCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEc
Q 037786 83 SPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDL 162 (565)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 162 (565)
..-+.++++++.++ .+|..+. ++|++|++++|.+....+..|.++++|++|++++|.+....+..|..+++|+.|++
T Consensus 19 Cs~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 19 CSGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp EETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred EeCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 34567888888887 5665443 88999999999999888888999999999999999998666677889999999999
Q ss_pred cCccccccCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccc
Q 037786 163 GSNSFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG 240 (565)
Q Consensus 163 ~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 240 (565)
++|.+....+. +..+++|+.|++++|.+. .+|..+..+++|++|++++|.+....+..+..+++|+.|++.+|++..
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 99999877666 678999999999999988 567778888999999999998886666678888888888888887763
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.65 E-value=8.5e-16 Score=150.66 Aligned_cols=174 Identities=22% Similarity=0.199 Sum_probs=97.3
Q ss_pred cEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCC--CCCCCcEEEccCCccCccCCccccCCCCCCEEEcc
Q 037786 38 TSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSN--WTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLS 115 (565)
Q Consensus 38 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~ 115 (565)
++++++++.++ .+|..+. +.++.|++++| .+....+... ..++|++|++++|.++...+..|..+++|++|+|+
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 34444444444 2333222 23444555544 3333333222 23555555555555554445556666666666666
Q ss_pred cccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcC-C---cCCCCCCEEeccCCccc
Q 037786 116 QCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD-I---MNLTRISRLDISNNQLT 191 (565)
Q Consensus 116 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~---~~~~~L~~L~l~~~~~~ 191 (565)
+|.+....+..|.++++|+.|++++|.+....+..|..+++|+.|++++|.+...... + ..+++|+.|++++|.+.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 6666665555666666666666666666655566666666666666666666654444 2 45667777777777666
Q ss_pred ccCCCCCcCCCC--CCEEEccccccc
Q 037786 192 GSIPSHGSGLQN--LAVLRLYNNTLS 215 (565)
Q Consensus 192 ~~~~~~~~~~~~--L~~L~l~~~~l~ 215 (565)
...+..+..++. ++.|++.+|.+.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 443344444554 366777777665
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.65 E-value=7e-16 Score=143.83 Aligned_cols=165 Identities=20% Similarity=0.196 Sum_probs=100.7
Q ss_pred ccEEEcCCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccC-CCCCCCCeEEcCCCc
Q 037786 324 IFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQ-IPWKNLKYLKLQSNL 402 (565)
Q Consensus 324 L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~L~~L~l~~n~ 402 (565)
+..++++++.++.++.+....+|+.|++++|.++ .++ .+. .+++|+.|++++|+++.+++ ..+++|+.|++++|+
T Consensus 21 l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~-~l~-~l~--~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ-SLA-GMQ--FFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNR 96 (263)
T ss_dssp HHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCC-CCT-TGG--GCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSC
T ss_pred HHHHHhcCCCcccccchhhcCcCcEEECcCCCcc-cch-HHh--hCCCCCEEECCCCccCCChhhccCCCCCEEECCCCc
Confidence 4444455555554443333335555555555555 333 222 34556666666666655554 245566666666666
Q ss_pred ccccCCCCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcc-cCCCcccEEECCCC
Q 037786 403 LQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQ-ISWKNLGYLDLRSN 481 (565)
Q Consensus 403 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~ls~n 481 (565)
+.+..+...++|++|++++|++++. ..+..+ ++|++|++++|++++++. ..+++|+.|++++|
T Consensus 97 l~~l~~~~~~~L~~L~L~~N~l~~~--~~l~~l--------------~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 97 LKNLNGIPSACLSRLFLDNNELRDT--DSLIHL--------------KNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGN 160 (263)
T ss_dssp CSCCTTCCCSSCCEEECCSSCCSBS--GGGTTC--------------TTCCEEECTTSCCCBCGGGGGCTTCCEEECTTS
T ss_pred cCCcCccccCcccEEEccCCccCCC--hhhcCc--------------ccccEEECCCCcCCCChHHccCCCCCEEECCCC
Confidence 6543222236777777777777653 245555 788888888888887743 67788888888888
Q ss_pred cccccC-CCCCCCCcEeeccCceeeecc
Q 037786 482 LLQGPL-LVPPSSLRVILILNNQFTGEI 508 (565)
Q Consensus 482 ~l~~~~-~~~~~~L~~L~l~~n~~~~~~ 508 (565)
.+++.. ...+++|+.|++++|.++...
T Consensus 161 ~i~~~~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 161 EITNTGGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp CCCBCTTSTTCCCCCEEEEEEEEEECCC
T ss_pred cCcchHHhccCCCCCEEeCCCCcccCCc
Confidence 877642 127778888888888887553
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-15 Score=148.98 Aligned_cols=156 Identities=23% Similarity=0.165 Sum_probs=76.3
Q ss_pred CCCcEEEccCCccCccCCcccc-CCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEE
Q 037786 83 SPLRCLDVSGTRFSGQLPDSIC-NLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVD 161 (565)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 161 (565)
..++.|++++|.++...+..|. ++++|++|++++|.+....+.+|.++++|++|++++|.+....+..|..+++|+.|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 3455555555555544444444 555555555555555555445555555555555555555544444455555555555
Q ss_pred ccCccccccCcC-CcCCCCCCEEeccCCcccccCCCCC---cCCCCCCEEEcccccccCCCchhhcCCCC--CCEEEccC
Q 037786 162 LGSNSFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHG---SGLQNLAVLRLYNNTLSGTIPSWLFTLPL--LRDIDLSD 235 (565)
Q Consensus 162 l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~l~~~~~~~l~~~~~--L~~L~l~~ 235 (565)
+++|.+....+. +..+++|+.|++++|.+....+..+ ..+++|+.|++++|.+....+..+..++. ++.|++.+
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence 555555544332 4555555555555555543322222 33455555555555554333333444433 23444444
Q ss_pred Ccc
Q 037786 236 NQL 238 (565)
Q Consensus 236 ~~~ 238 (565)
|++
T Consensus 199 N~~ 201 (361)
T 2xot_A 199 NPL 201 (361)
T ss_dssp SCE
T ss_pred CCc
Confidence 433
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.61 E-value=7e-15 Score=137.02 Aligned_cols=170 Identities=21% Similarity=0.276 Sum_probs=128.9
Q ss_pred CCCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEE
Q 037786 9 VTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCL 88 (565)
Q Consensus 9 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L 88 (565)
+.+++.++++++.+.+.. .+..+ ++|++|++++|.++. .+ .+..+++|++|++++| .+.+..+ +..+++|++|
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l-~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L 90 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKEL-SGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHH-TTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEE
T ss_pred HHHHHHHHhcCCCccccc--chhhc-CcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEE
Confidence 344566777787777654 46677 888888888888873 44 6788888888888888 5555444 5556888888
Q ss_pred EccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCcccc
Q 037786 89 DVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFD 168 (565)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 168 (565)
++++|.+++ ++. +.. ++|++|++++|.+++. ..+..+++|+.|++++|.+++. +.+..+++|+.|++++|.+.
T Consensus 91 ~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCc
Confidence 888888874 333 333 8889999998888764 4588888899999999888753 36788889999999998887
Q ss_pred ccCcCCcCCCCCCEEeccCCccccc
Q 037786 169 GQFPDIMNLTRISRLDISNNQLTGS 193 (565)
Q Consensus 169 ~~~~~~~~~~~L~~L~l~~~~~~~~ 193 (565)
.. ..+..+++|+.|++++|++...
T Consensus 164 ~~-~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 NT-GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred ch-HHhccCCCCCEEeCCCCcccCC
Confidence 66 5688888899999988887743
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.7e-14 Score=138.93 Aligned_cols=311 Identities=11% Similarity=0.046 Sum_probs=182.9
Q ss_pred HHHhhCCCCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCC
Q 037786 3 EALVQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWT 82 (565)
Q Consensus 3 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~ 82 (565)
+.+|.+|++|+++.+.. .++.+...+|.++ .+|+.+++..+ ++.....+|..+..|+.+.+..+ ...........
T Consensus 64 ~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c-~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~--l~~i~~~aF~~ 138 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPS-TVREIGEFAFENC-SKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM--LKSIGVEAFKG 138 (394)
T ss_dssp TTTTTTCTTEEEEECCT-TCCEECTTTTTTC-TTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTTT
T ss_pred HHHhhCCCCceEEEeCC-CccCcchhHhhCC-CCCcEEEeCCC-ceEccchhhcccccchhhcccCc--eeeecceeeec
Confidence 45788888888888864 3666777788887 88888888655 55566677888888888776644 22211222222
Q ss_pred CCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEc
Q 037786 83 SPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDL 162 (565)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 162 (565)
..+........ +......+|.+|++|+.+.+..+ +......+|.++.+|+.+++..+ +......+|.++..|+.+.+
T Consensus 139 ~~~~~~~~~~~-~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~ 215 (394)
T 4fs7_A 139 CDFKEITIPEG-VTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEF 215 (394)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCC
T ss_pred ccccccccCcc-ccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeec
Confidence 22333332221 12233466778888888888654 34456667788888888887655 44345567777777777776
Q ss_pred cCccccccCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccC
Q 037786 163 GSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHL 242 (565)
Q Consensus 163 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 242 (565)
..+... ..........|+.+.+... +.......+..+..++.+.+..+... .....|..+..++.+......+. ..
T Consensus 216 ~~~~~~-i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~-~~ 291 (394)
T 4fs7_A 216 PNSLYY-LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP-EK 291 (394)
T ss_dssp CTTCCE-ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC-TT
T ss_pred CCCceE-eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec-cc
Confidence 655332 2233444567777777543 23345566777777877777665432 44456667777777766554432 22
Q ss_pred CCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCC
Q 037786 243 DAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFP 322 (565)
Q Consensus 243 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~ 322 (565)
....+.+|+.+.+..+ ++.....+|.+|.+|+.+++..+ ++ .+...+|.+|.+|+.+.+..+ ++..... .+..++
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~-aF~~C~ 366 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGAN-AFQGCI 366 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTT-TBTTCT
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHH-HhhCCC
Confidence 2335566666666543 33233445666666666666543 22 233455666666666666544 3322222 235555
Q ss_pred CccEEEcC
Q 037786 323 QIFILSLS 330 (565)
Q Consensus 323 ~L~~L~l~ 330 (565)
+|+.+++.
T Consensus 367 ~L~~i~lp 374 (394)
T 4fs7_A 367 NLKKVELP 374 (394)
T ss_dssp TCCEEEEE
T ss_pred CCCEEEEC
Confidence 56665554
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.2e-15 Score=133.32 Aligned_cols=119 Identities=21% Similarity=0.171 Sum_probs=66.5
Q ss_pred cEEEcCCCccCCccCCCCCCCCeEEcCCCcccccCCC----CCCCCcEEEccccccCccchhhhhhcCCCCCCccccccC
Q 037786 373 SFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPV----PPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIG 448 (565)
Q Consensus 373 ~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~----~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~ 448 (565)
+.+++++|.++.++....+++++|++++|.+.+..+. .+++|++|++++|++++..+..+..+
T Consensus 11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l------------- 77 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA------------- 77 (192)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC-------------
T ss_pred CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCc-------------
Confidence 5667777777666665445666666666666554432 25566666666666665555555555
Q ss_pred CCCCcEEeCcCCCCCCC-cc--cCCCcccEEECCCCcccccCCC---CCCCCcEeeccCceee
Q 037786 449 KDSLSYLNLSHNFITKM-KQ--ISWKNLGYLDLRSNLLQGPLLV---PPSSLRVILILNNQFT 505 (565)
Q Consensus 449 ~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~ 505 (565)
++|++|++++|++..+ +. ..+++|+.|++++|.+++..+. .+++|++|++++|+++
T Consensus 78 -~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 78 -SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp -TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred -ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 5666666666666555 22 3445555555555555543332 3445555555555544
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.9e-15 Score=132.50 Aligned_cols=136 Identities=24% Similarity=0.267 Sum_probs=97.8
Q ss_pred CeEEcCCCcccccCCCCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCc-c--cCC
Q 037786 394 KYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMK-Q--ISW 470 (565)
Q Consensus 394 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~--~~~ 470 (565)
+.++++++.+.......++++++|++++|+++ .++..+..+ ++|++|++++|.++.++ . ..+
T Consensus 13 ~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l--------------~~L~~L~Ls~N~i~~i~~~~f~~l 77 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNY--------------KHLTLIDLSNNRISTLSNQSFSNM 77 (193)
T ss_dssp TEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGC--------------TTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcc--------------cCCCEEECCCCcCCEeCHhHccCC
Confidence 34555555555333233566777777777776 344566666 78888888888888883 2 667
Q ss_pred CcccEEECCCCcccccCCC---CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCCCCCCCCCccccc
Q 037786 471 KNLGYLDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSPWCQTKW 547 (565)
Q Consensus 471 ~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~l~~ 547 (565)
++|+.|++++|.+++..+. .+++|+.|++++|.++...+..|..+++|+.|++++|++.|. |.+.|
T Consensus 78 ~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~-----------c~l~~ 146 (193)
T 2wfh_A 78 TQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD-----------CNMQW 146 (193)
T ss_dssp TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS-----------GGGHH
T ss_pred CCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC-----------CcCHH
Confidence 7888888888888764433 678888999999998877777788899999999999999876 66666
Q ss_pred CCCCcccc
Q 037786 548 PSRWSATT 555 (565)
Q Consensus 548 ~~~~~~~~ 555 (565)
...|+...
T Consensus 147 l~~~~~~~ 154 (193)
T 2wfh_A 147 LSDWVKSE 154 (193)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhc
Confidence 66666443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-17 Score=173.07 Aligned_cols=197 Identities=19% Similarity=0.148 Sum_probs=135.0
Q ss_pred CCCCCccEEEcCCCCCCCCCchhhcc-ccceEeccCCc-------------CcccCChhhhhhCCCCccEEE-cCCCccC
Q 037786 319 SSFPQIFILSLSACNISAFPSFLRSL-ELAYLDLSENN-------------IDGQIPNWMWEVGKDTLSFLD-LSHNFIT 383 (565)
Q Consensus 319 ~~~~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~-------------l~~~~~~~~~~~~~~~L~~L~-ls~n~l~ 383 (565)
...+.|+.|++++|.++.+|..+... +|+.|++++|. ..+..|..+. .+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~--~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ--YFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHH--HHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHH--HHHhcccCcchhhcccc
Confidence 34566677777777777676666555 67777765543 2222232222 234555555 4444332
Q ss_pred CccCCCCCCCCeEEcCCCcccccCCCCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCC
Q 037786 384 EMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFIT 463 (565)
Q Consensus 384 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 463 (565)
+|+.+.+++|.+.... ...|++|++++|++++ +|. +..+ ++|++|++++|.++
T Consensus 424 --------~L~~l~l~~n~i~~l~---~~~L~~L~Ls~n~l~~-lp~-~~~l--------------~~L~~L~Ls~N~l~ 476 (567)
T 1dce_A 424 --------DLRSKFLLENSVLKME---YADVRVLHLAHKDLTV-LCH-LEQL--------------LLVTHLDLSHNRLR 476 (567)
T ss_dssp --------HHHHHHHHHHHHHHHH---HTTCSEEECTTSCCSS-CCC-GGGG--------------TTCCEEECCSSCCC
T ss_pred --------hhhhhhhhcccccccC---ccCceEEEecCCCCCC-CcC-cccc--------------ccCcEeecCccccc
Confidence 2334444445444321 2357888888888876 343 7776 88999999999998
Q ss_pred CCcc--cCCCcccEEECCCCcccccCCC--CCCCCcEeeccCceeeecc-chhhhcCCCCCEEeCCCCcCcccCCCCC--
Q 037786 464 KMKQ--ISWKNLGYLDLRSNLLQGPLLV--PPSSLRVILILNNQFTGEI-IHSICDIIALDVLDLSNNRLSGTIPKCI-- 536 (565)
Q Consensus 464 ~~~~--~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~n~~~~~~p~~l-- 536 (565)
.+|. ..+++|+.|++++|.+++ +|. .+++|+.|++++|.+++.. |..+..+++|+.|+|++|++.+. |+..
T Consensus 477 ~lp~~~~~l~~L~~L~Ls~N~l~~-lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~-~~~~~~ 554 (567)
T 1dce_A 477 ALPPALAALRCLEVLQASDNALEN-VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE-EGIQER 554 (567)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS-SSCTTH
T ss_pred ccchhhhcCCCCCEEECCCCCCCC-CcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC-ccHHHH
Confidence 7765 778899999999999887 444 7889999999999998776 88999999999999999999854 4443
Q ss_pred --CCCCCCcccc
Q 037786 537 --GNFSPWCQTK 546 (565)
Q Consensus 537 --~~l~~L~~l~ 546 (565)
..+++|+.|+
T Consensus 555 l~~~lp~L~~L~ 566 (567)
T 1dce_A 555 LAEMLPSVSSIL 566 (567)
T ss_dssp HHHHCTTCSEEE
T ss_pred HHHHCcccCccC
Confidence 2378888775
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-13 Score=134.89 Aligned_cols=264 Identities=10% Similarity=0.097 Sum_probs=166.6
Q ss_pred hCCCCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCc
Q 037786 7 QNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLR 86 (565)
Q Consensus 7 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~ 86 (565)
..+..++.+.+..+ +..+...+|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+..+ ...-....+..+++|+
T Consensus 110 ~~~~~l~~i~ip~~-i~~I~~~aF~~~--~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~~-l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 110 EILKGYNEIILPNS-VKSIPKDAFRNS--QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPST-LEQLKEDIFYYCYNLK 183 (401)
T ss_dssp EECSSCSEEECCTT-CCEECTTTTTTC--CCSEEECCTT-CCEECTTTTTTC-CCCEEECCTT-CCEECSSTTTTCTTCC
T ss_pred EecCCccEEEECCc-cCEehHhhcccC--CccEEEeCCC-ccEECHHhcCCC-CceEEEeCCC-ccEehHHHhhCcccCC
Confidence 34566777777643 555666667663 5777777665 555666667764 5777777653 1112223344457777
Q ss_pred EEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCcc
Q 037786 87 CLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNS 166 (565)
Q Consensus 87 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 166 (565)
.+++.++.++.....+|. +.+|+.+.+.. .+......+|.++++|+.+++..+ +......+|.+ .+|+.+.+.. .
T Consensus 184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~ 258 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-G 258 (401)
T ss_dssp EEECTTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-T
T ss_pred eeecCCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-C
Confidence 777777777654445554 57777777764 366666677777778888877654 44445556666 6777777743 3
Q ss_pred ccccCcC-CcCCCCCCEEeccCCccc-----ccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccc
Q 037786 167 FDGQFPD-IMNLTRISRLDISNNQLT-----GSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG 240 (565)
Q Consensus 167 ~~~~~~~-~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 240 (565)
+..+... |..+++|+.+.+.++.+. .+....|..|++|+.+++.+ .+.......|.+|++|+.+.+..+ +..
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 4444333 777778888877766543 35566777788888888874 355455667777888888887655 332
Q ss_pred cC-CCC-CCCCCcEEEccCCccccCCchhhhcCC-CcCccccccccc
Q 037786 241 HL-DAF-PSKSLRKLYLTNNRLHGSIPSSIFELA-NLTYLSLASNNF 284 (565)
Q Consensus 241 ~~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~~ 284 (565)
.. ..+ .+ +|+.+.+.++.........+..++ +++.+.+..+.+
T Consensus 337 I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 337 INFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp ECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred EcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 21 122 44 788888887776644455555553 567777766554
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-14 Score=139.23 Aligned_cols=84 Identities=14% Similarity=0.095 Sum_probs=39.9
Q ss_pred CCCCCEEEccCccccccCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCC-EEEcccccccCCCchhhcCCCCCCEE
Q 037786 154 LHQLTDVDLGSNSFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLA-VLRLYNNTLSGTIPSWLFTLPLLRDI 231 (565)
Q Consensus 154 l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~~~l~~~~~L~~L 231 (565)
+++|+.+++++|.+..+... |..+++|+.+++.++ +..+.+..|.+|++|+ .+++.+ .+....+..|.+|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 44555555555444443333 444555555555444 4334444455555555 555544 3333334445555555555
Q ss_pred EccCCccc
Q 037786 232 DLSDNQLT 239 (565)
Q Consensus 232 ~l~~~~~~ 239 (565)
++..+.+.
T Consensus 303 ~l~~n~i~ 310 (329)
T 3sb4_A 303 LATGDKIT 310 (329)
T ss_dssp EECSSCCC
T ss_pred EeCCCccC
Confidence 55444444
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=125.80 Aligned_cols=133 Identities=22% Similarity=0.186 Sum_probs=78.5
Q ss_pred CCCccEEEccCCccc-ccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEE
Q 037786 34 SSSLTSLSLSYCRIQ-GEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLREL 112 (565)
Q Consensus 34 ~~~L~~L~l~~~~i~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 112 (565)
+++|++|++++|.++ +.+|..+..+++|++|++++| .+... ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 366777777777776 455666677777777777776 33333 334444666666666666654455555556666666
Q ss_pred EcccccCcccC-chhccCCCCCCeeeccCCcccccCC---cCccCCCCCCEEEccCcccc
Q 037786 113 HLSQCNFYGFL-PASLGNVTQLAVLSLSFKSFSGHIP---PSLSNLHQLTDVDLGSNSFD 168 (565)
Q Consensus 113 ~L~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~ 168 (565)
++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|...
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 66666655432 2455556666666666666553332 24555556666665555544
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-14 Score=125.40 Aligned_cols=129 Identities=21% Similarity=0.230 Sum_probs=55.4
Q ss_pred CCcEEEccCCccC-ccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEc
Q 037786 84 PLRCLDVSGTRFS-GQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDL 162 (565)
Q Consensus 84 ~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 162 (565)
+|++|++++|.++ +.+|..+..+++|++|++++|.++.. ..+..+++|++|++++|.+.+.+|..+..+++|+.|++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 3444444444443 23344444444445555544444433 34444444444444444444333444444444444444
Q ss_pred cCccccccC--cCCcCCCCCCEEeccCCcccccCC---CCCcCCCCCCEEEcccccc
Q 037786 163 GSNSFDGQF--PDIMNLTRISRLDISNNQLTGSIP---SHGSGLQNLAVLRLYNNTL 214 (565)
Q Consensus 163 ~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~l 214 (565)
++|.+.... ..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 444444322 224444444444444444442221 1333444444444444433
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=3.9e-17 Score=168.74 Aligned_cols=103 Identities=26% Similarity=0.374 Sum_probs=46.9
Q ss_pred CCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcCCcCCCCCCEEeccCC
Q 037786 109 LRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNN 188 (565)
Q Consensus 109 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 188 (565)
|+.|++++|.+++. |. |..+++|+.|++++|.++ .+|..++.+++|+.|++++|.+.++ +.++.+++|+.|++++|
T Consensus 443 L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l-p~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 443 VRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-DGVANLPRLQELLLCNN 518 (567)
T ss_dssp CSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-GGGTTCSSCCEEECCSS
T ss_pred ceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCC-cccCCCCCCcEEECCCC
Confidence 44444444444432 22 444444444444444444 3444444444444444444444432 24444444444444444
Q ss_pred cccccC-CCCCcCCCCCCEEEccccccc
Q 037786 189 QLTGSI-PSHGSGLQNLAVLRLYNNTLS 215 (565)
Q Consensus 189 ~~~~~~-~~~~~~~~~L~~L~l~~~~l~ 215 (565)
.+++.. |..+..+++|+.|++++|.+.
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 444333 444444444444444444443
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-13 Score=120.95 Aligned_cols=129 Identities=21% Similarity=0.373 Sum_probs=91.9
Q ss_pred cEEEccCCccCccCCccccCCCCCCEEEcccccCcccCch-hccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccC
Q 037786 86 RCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPA-SLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGS 164 (565)
Q Consensus 86 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (565)
+.++++++.++ .+|..+. .++++|++++|.+....+. .|..+++|++|++++|.+++..|.+|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56677777765 4555443 2777777777777665553 467777788888887777766677777777777777777
Q ss_pred ccccccCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCC
Q 037786 165 NSFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGT 217 (565)
Q Consensus 165 ~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 217 (565)
|.+....+. +..+++|+.|++++|++++..+..+..+++|++|++++|.+...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 777766655 66777777777777777776677777777777777777776543
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.51 E-value=3e-14 Score=120.49 Aligned_cols=128 Identities=21% Similarity=0.170 Sum_probs=84.6
Q ss_pred CCCccEEEccCCccc-ccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEE
Q 037786 34 SSSLTSLSLSYCRIQ-GEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLREL 112 (565)
Q Consensus 34 ~~~L~~L~l~~~~i~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 112 (565)
++++++|++++|.++ +..|..+..+++|++|++++| .+.+. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 366888888888877 566667777888888888877 44433 444444667777777777765566666667777777
Q ss_pred EcccccCccc-CchhccCCCCCCeeeccCCcccccCC---cCccCCCCCCEEEcc
Q 037786 113 HLSQCNFYGF-LPASLGNVTQLAVLSLSFKSFSGHIP---PSLSNLHQLTDVDLG 163 (565)
Q Consensus 113 ~L~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L~l~ 163 (565)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7777776653 23556667777777777776664433 356666667666654
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.51 E-value=9e-14 Score=121.32 Aligned_cols=125 Identities=18% Similarity=0.081 Sum_probs=80.2
Q ss_pred CeEEcCCCcccccCCCCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcc---cCC
Q 037786 394 KYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQ---ISW 470 (565)
Q Consensus 394 ~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~ 470 (565)
+.++++++.+.......++++++|++++|++++..+..+..+ ++|++|++++|.+..++. ..+
T Consensus 10 ~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l--------------~~L~~L~l~~n~l~~~~~~~~~~l 75 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKL--------------TQLTKLSLSQNQIQSLPDGVFDKL 75 (177)
T ss_dssp TEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTC--------------TTCSEEECCSSCCCCCCTTTTTTC
T ss_pred CEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCc--------------ccccEEECCCCcceEeChhHccCC
Confidence 345555555443333334556666666666655444445555 677777777777776632 456
Q ss_pred CcccEEECCCCcccccCCC---CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccC
Q 037786 471 KNLGYLDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTI 532 (565)
Q Consensus 471 ~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 532 (565)
++|+.|++++|.+++..+. .+++|++|++++|.+++..+..+..+++|++|++++|++.+..
T Consensus 76 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 76 TKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 6777777777777653332 5677888888888887666666777888888888888887653
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-14 Score=122.61 Aligned_cols=125 Identities=22% Similarity=0.215 Sum_probs=62.7
Q ss_pred CCCcEEEccCCccC-ccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEE
Q 037786 83 SPLRCLDVSGTRFS-GQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVD 161 (565)
Q Consensus 83 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 161 (565)
+++++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34555555555554 34455555555556666555555543 4455555555555555555544444444455555555
Q ss_pred ccCccccccC--cCCcCCCCCCEEeccCCcccccCC---CCCcCCCCCCEEEc
Q 037786 162 LGSNSFDGQF--PDIMNLTRISRLDISNNQLTGSIP---SHGSGLQNLAVLRL 209 (565)
Q Consensus 162 l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l 209 (565)
+++|.+.+.. ..+..+++|+.|++++|.+++..+ ..+..+++|+.|++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 5555554322 234445555555555554443222 23344444444444
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.9e-12 Score=127.80 Aligned_cols=266 Identities=11% Similarity=0.100 Sum_probs=202.2
Q ss_pred hhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCC
Q 037786 31 KNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLR 110 (565)
Q Consensus 31 ~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 110 (565)
...+..++.+.+.+. ++.+...+|.++ +|+.+.+..+ +...........+|+.+.+.. .++.....+|.+|++|+
T Consensus 109 ~~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 109 TEILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp EEECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred EEecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC--ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCC
Confidence 334478899998765 666777888886 7999999865 443333333346899999986 56656678899999999
Q ss_pred EEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcC-CcCCCCCCEEeccCCc
Q 037786 111 ELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD-IMNLTRISRLDISNNQ 189 (565)
Q Consensus 111 ~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~ 189 (565)
.+++.++.++.....+|. +.+|+.+.+..+ +......+|.++++|+.+++..+ +..+... |.. .+|+.+.+. +.
T Consensus 184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~ 258 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NG 258 (401)
T ss_dssp EEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TT
T ss_pred eeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CC
Confidence 999999998888778887 589999999854 66667778999999999999875 4444444 555 789999994 45
Q ss_pred ccccCCCCCcCCCCCCEEEccccccc-----CCCchhhcCCCCCCEEEccCCcccccCC--CCCCCCCcEEEccCCcccc
Q 037786 190 LTGSIPSHGSGLQNLAVLRLYNNTLS-----GTIPSWLFTLPLLRDIDLSDNQLTGHLD--AFPSKSLRKLYLTNNRLHG 262 (565)
Q Consensus 190 ~~~~~~~~~~~~~~L~~L~l~~~~l~-----~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~ 262 (565)
+..+....|..|++|+.+++.++.+. ......|..|++|+.+.+..+ +..... ...+.+|+.+.+..+ ++.
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRILGQGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCCSCCEEEECTT-CCE
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEEhhhhhcCCCCccEEEECcc-ccE
Confidence 66677888999999999999887654 345678899999999999854 443322 236789999999655 554
Q ss_pred CCchhhhcCCCcCccccccccccCccChHhhhcCC-CCCEEEccCCccc
Q 037786 263 SIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLV-NLAALELSHNSLS 310 (565)
Q Consensus 263 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~-~L~~L~l~~~~i~ 310 (565)
....+|.++ +|+.+.+.+|..... ....|.+++ .+..+.+..+.+.
T Consensus 337 I~~~aF~~~-~L~~l~l~~n~~~~l-~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 337 INFSAFNNT-GIKEVKVEGTTPPQV-FEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp ECTTSSSSS-CCCEEEECCSSCCBC-CCSSCCCSCTTCCEEEECGGGHH
T ss_pred EcHHhCCCC-CCCEEEEcCCCCccc-ccccccCCCCCccEEEeCHHHHH
Confidence 556788888 999999999987643 345677774 7889999877553
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.48 E-value=8e-14 Score=134.80 Aligned_cols=223 Identities=13% Similarity=0.074 Sum_probs=144.6
Q ss_pred HHHhhC--------CCCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCC--C
Q 037786 3 EALVQN--------VTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSN--L 72 (565)
Q Consensus 3 ~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~--~ 72 (565)
+.+|.+ |++|++|+++. .+..+...+|.++ ++|+.++++++.+....+.+|..+.++..+....... .
T Consensus 86 ~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~-~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~ 163 (329)
T 3sb4_A 86 AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGC-DNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRF 163 (329)
T ss_dssp TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTC-TTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHT
T ss_pred HHHhcccccccccccCCCcEEECCc-cccchhHHHhhcC-cccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhc
Confidence 456677 88888888888 7777888888887 8888888888887777778888887777776654210 0
Q ss_pred CccCC--CCCCCCCCc-EEEccCCccCccCCccc----cCCCCCCEEEcccccCcccCchhc-cCCCCCCeeeccCCccc
Q 037786 73 SGVFP--RSNWTSPLR-CLDVSGTRFSGQLPDSI----CNLRHLRELHLSQCNFYGFLPASL-GNVTQLAVLSLSFKSFS 144 (565)
Q Consensus 73 ~~~~~--~~~~~~~L~-~L~l~~~~~~~~~~~~~----~~l~~L~~L~L~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~ 144 (565)
...+. .+..+..|+ .+.+.... .++..+ ....+++.+.+.+.- .......+ ..+++|+.+++.+|.++
T Consensus 164 ~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l-~~~~~~~l~~~~~~L~~l~L~~n~i~ 239 (329)
T 3sb4_A 164 KNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKL-DNADFKLIRDYMPNLVSLDISKTNAT 239 (329)
T ss_dssp STTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECC-CHHHHHHHHHHCTTCCEEECTTBCCC
T ss_pred cccccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeee-cHHHHHHHHHhcCCCeEEECCCCCcc
Confidence 00111 111223444 33333221 111111 123445555555432 11212222 23778888888888777
Q ss_pred ccCCcCccCCCCCCEEEccCccccccCcC-CcCCCCCC-EEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhh
Q 037786 145 GHIPPSLSNLHQLTDVDLGSNSFDGQFPD-IMNLTRIS-RLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWL 222 (565)
Q Consensus 145 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l 222 (565)
.....+|.++++|+.+++.++ +..+... |.++++|+ .+++.. .++.+.+..|.+|++|+.+++..+.+.......|
T Consensus 240 ~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF 317 (329)
T 3sb4_A 240 TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELF 317 (329)
T ss_dssp EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTT
T ss_pred eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhh
Confidence 666677888888888888876 5555544 77888888 888877 6666677788888888888888888876667788
Q ss_pred cCCCCCCEEEc
Q 037786 223 FTLPLLRDIDL 233 (565)
Q Consensus 223 ~~~~~L~~L~l 233 (565)
.++++|+.+..
T Consensus 318 ~~~~~L~~ly~ 328 (329)
T 3sb4_A 318 GNGVPSKLIYK 328 (329)
T ss_dssp CTTCCCCEEEC
T ss_pred cCCcchhhhcc
Confidence 88888887753
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-14 Score=154.00 Aligned_cols=122 Identities=22% Similarity=0.252 Sum_probs=64.8
Q ss_pred cCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcCCcCC
Q 037786 98 QLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNL 177 (565)
Q Consensus 98 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 177 (565)
..+..|..++.|+.|+|++|.+. ..+..+.++++|++|+|++|.++ .+|..+..+++|+.|++++|.+..++..++.+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l 292 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSC 292 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCC
Confidence 34455555566666666666555 23333445566666666666555 45555555666666666666655444445556
Q ss_pred CCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhh
Q 037786 178 TRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWL 222 (565)
Q Consensus 178 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l 222 (565)
++|+.|++++|.+. .+|..|..+++|+.|++++|.+.+..+..+
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 66666666666555 344455556666666666666554444433
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-14 Score=155.17 Aligned_cols=153 Identities=20% Similarity=0.228 Sum_probs=76.4
Q ss_pred cCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccC
Q 037786 50 EFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGN 129 (565)
Q Consensus 50 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~ 129 (565)
..+..+..++.|+.|+|++| .+.........+++|++|+|++|.++ .+|..|.++++|++|+|++|.++ ..|..|.+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 34555666666666666666 33333333334466666666666666 55666666666666666666665 44556666
Q ss_pred CCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcC-CcCCC-CCCEEeccCCcccccCCCCCcCCCCCCEE
Q 037786 130 VTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD-IMNLT-RISRLDISNNQLTGSIPSHGSGLQNLAVL 207 (565)
Q Consensus 130 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 207 (565)
+++|++|++++|.++ .+|..|..+++|+.|++++|.+.+..+. +.... .+..+++++|.+.+..|. .|+.|
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l 364 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFI 364 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C----
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------cccee
Confidence 666666666666665 4555566666666666666666544333 22111 111244555555543332 34455
Q ss_pred Ecccc
Q 037786 208 RLYNN 212 (565)
Q Consensus 208 ~l~~~ 212 (565)
+++.|
T Consensus 365 ~l~~n 369 (727)
T 4b8c_D 365 EINTD 369 (727)
T ss_dssp -----
T ss_pred Eeecc
Confidence 55544
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-12 Score=114.85 Aligned_cols=126 Identities=25% Similarity=0.301 Sum_probs=71.9
Q ss_pred cEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCc
Q 037786 86 RCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSN 165 (565)
Q Consensus 86 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (565)
+.++++++.++ .+|..+ .++|++|++++|.++ ..|..|.++++|+.|++++|.+++..+.+|..+++|+.|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 34555555555 344433 245666666666655 33455666666666666666666555555666666666666666
Q ss_pred cccccCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEccccccc
Q 037786 166 SFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLS 215 (565)
Q Consensus 166 ~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 215 (565)
.+....+. +..+++|+.|++++|.+....+..|..+++|+.|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 66555443 555566666666666655444444555566666666666554
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.7e-12 Score=113.18 Aligned_cols=128 Identities=20% Similarity=0.211 Sum_probs=74.8
Q ss_pred cEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCc
Q 037786 86 RCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSN 165 (565)
Q Consensus 86 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (565)
+.++++++.++ .+|..+ .++|++|++++|.+....+..|..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 45555565555 334322 246666666666666555555666666666666666666444445566666666666666
Q ss_pred cccccCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccC
Q 037786 166 SFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSG 216 (565)
Q Consensus 166 ~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 216 (565)
.+....+. +..+++|+.|++++|.+.+..+..+..+++|++|++++|.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 66554444 4556666666666666654444445556666666666665543
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-11 Score=122.95 Aligned_cols=304 Identities=11% Similarity=0.004 Sum_probs=217.7
Q ss_pred HHHhhCCCCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCC
Q 037786 3 EALVQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWT 82 (565)
Q Consensus 3 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~ 82 (565)
+.+|.+|++|+.+++..+ +..+...+|..+ .+|+.+.+..+ +......+|.++..++....... ..-....+..+
T Consensus 87 ~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c-~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~~~--~~i~~~aF~~c 161 (394)
T 4fs7_A 87 EFAFENCSKLEIINIPDS-VKMIGRCTFSGC-YALKSILLPLM-LKSIGVEAFKGCDFKEITIPEGV--TVIGDEAFATC 161 (394)
T ss_dssp TTTTTTCTTCCEECCCTT-CCEECTTTTTTC-TTCCCCCCCTT-CCEECTTTTTTCCCSEEECCTTC--CEECTTTTTTC
T ss_pred hhHhhCCCCCcEEEeCCC-ceEccchhhccc-ccchhhcccCc-eeeecceeeecccccccccCccc--cccchhhhccc
Confidence 568999999999999765 667778889888 88998888665 55466778888765554443332 12223345556
Q ss_pred CCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEc
Q 037786 83 SPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDL 162 (565)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 162 (565)
.+|+.+.+..+... ....+|.++.+|+.+.+..+ ++.....+|.++..|+.+.+..+... +.........|+.+.+
T Consensus 162 ~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~i 237 (394)
T 4fs7_A 162 ESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIII 237 (394)
T ss_dssp TTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEE
T ss_pred CCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEE
Confidence 89999999765433 55678899999999999765 56677788999999999988776543 2333445678999988
Q ss_pred cCccccccCc-CCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCccccc
Q 037786 163 GSNSFDGQFP-DIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGH 241 (565)
Q Consensus 163 ~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~ 241 (565)
.... ..... .+..+..++.+.+..+... .....|..+..++.+......+. ...+..+.+|+.+.+..+ +...
T Consensus 238 p~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I 311 (394)
T 4fs7_A 238 PDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFI 311 (394)
T ss_dssp CTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEE
T ss_pred CCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc-ccee
Confidence 7543 32333 3788999999999876544 66778889999999988776543 346788999999999765 3322
Q ss_pred --CCCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccC
Q 037786 242 --LDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNS 319 (565)
Q Consensus 242 --~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~ 319 (565)
.....+.+|+.+.+..+ ++.....+|.+|.+|+.+++..+ +. .+...+|.+|.+|+.+++..+- ... ...+.
T Consensus 312 ~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~~~-~~~--~~~F~ 385 (394)
T 4fs7_A 312 GEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPKRL-EQY--RYDFE 385 (394)
T ss_dssp CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEGGG-GGG--GGGBC
T ss_pred chhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECCCC-EEh--hheec
Confidence 22336789999999754 55455678889999999999876 43 4556789999999999997652 211 12246
Q ss_pred CCCCccEE
Q 037786 320 SFPQIFIL 327 (565)
Q Consensus 320 ~~~~L~~L 327 (565)
.+++|+.+
T Consensus 386 ~c~~L~~I 393 (394)
T 4fs7_A 386 DTTKFKWI 393 (394)
T ss_dssp TTCEEEEE
T ss_pred CCCCCcEE
Confidence 66777654
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.40 E-value=6.8e-13 Score=115.51 Aligned_cols=133 Identities=14% Similarity=0.128 Sum_probs=71.9
Q ss_pred hCCCCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCc
Q 037786 7 QNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLR 86 (565)
Q Consensus 7 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~ 86 (565)
.++++|++|++++|.+..+. .+..+.++|++|++++|.+++. ..+..+++|++|++
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~--~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~L-------------------- 71 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIE--NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLV-------------------- 71 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCC--CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEEC--------------------
T ss_pred CCcCCceEEEeeCCCCchhH--HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEEC--------------------
Confidence 34555555666655555431 2334434555555555555532 34444555555554
Q ss_pred EEEccCCccCccCCccccCCCCCCEEEcccccCcccCc-hhccCCCCCCeeeccCCcccccCCc----CccCCCCCCEEE
Q 037786 87 CLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLP-ASLGNVTQLAVLSLSFKSFSGHIPP----SLSNLHQLTDVD 161 (565)
Q Consensus 87 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~ 161 (565)
++|.++...+..|..+++|++|++++|.+..... ..+..+++|+.|++++|.+.. .+. .+..+++|+.|+
T Consensus 72 ----s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld 146 (176)
T 1a9n_A 72 ----NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLD 146 (176)
T ss_dssp ----CSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEET
T ss_pred ----CCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeC
Confidence 4555553333334566666666666666643221 255666666666666666652 333 256666677776
Q ss_pred ccCcccc
Q 037786 162 LGSNSFD 168 (565)
Q Consensus 162 l~~~~~~ 168 (565)
+++|...
T Consensus 147 ~~~n~~~ 153 (176)
T 1a9n_A 147 FQKVKLK 153 (176)
T ss_dssp TEECCHH
T ss_pred CCcCCHH
Confidence 6666543
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.37 E-value=8.8e-11 Score=116.43 Aligned_cols=293 Identities=12% Similarity=0.092 Sum_probs=142.2
Q ss_pred HHHhhCCC-CCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCc---ccccCCccccCCCCCCEEecCCCCCCCccCCC
Q 037786 3 EALVQNVT-KLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCR---IQGEFPENIFRLSNLQMVRLKFNSNLSGVFPR 78 (565)
Q Consensus 3 ~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~---i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~ 78 (565)
+.+|.+++ .|+++.+..+ ++.+...+|.++ .+|+.+.+..+. ++.....+|..|..|+.+.+..+ ...-....
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C-~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a 132 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNC-TSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEA 132 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CCEECTTTTTTC-TTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTT
T ss_pred HhhccCCCCcCEEEEECCC-eeEEhHHHhhCC-ccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhh
Confidence 34666664 4777777643 555666677776 777777776542 44445566777777776666543 11112222
Q ss_pred CCCCCCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCC
Q 037786 79 SNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLT 158 (565)
Q Consensus 79 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 158 (565)
+..+.+|+.+.+.... .......|..+..|+.+.+..+ ++.....+|.+ ..|+.+.+...... ....+|..+..++
T Consensus 133 F~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~ 208 (394)
T 4gt6_A 133 FHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALS 208 (394)
T ss_dssp TTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCC
T ss_pred hhhhccccccccccee-eeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccccc
Confidence 3334666666665432 2234455666666666666543 34344445543 45666666543222 3344556666666
Q ss_pred EEEccCccccccCcC--------------CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcC
Q 037786 159 DVDLGSNSFDGQFPD--------------IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFT 224 (565)
Q Consensus 159 ~L~l~~~~~~~~~~~--------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~ 224 (565)
............... +.....+..+.+.. .+.......|..+..|+.+.+..+... .....|..
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~ 286 (394)
T 4gt6_A 209 TITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMN 286 (394)
T ss_dssp EEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTT
T ss_pred eecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCccccc
Confidence 655444332211100 11112233333322 122233445556666666666543322 33345555
Q ss_pred CCCCCEEEccCCccccc--CCCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEE
Q 037786 225 LPLLRDIDLSDNQLTGH--LDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAAL 302 (565)
Q Consensus 225 ~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L 302 (565)
++.|+.+.+... +... .....+.+|+.+.+..+ ++.....+|.+|.+|+.+.+..+ ++ .+...+|.+|.+|+.+
T Consensus 287 c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i 362 (394)
T 4gt6_A 287 CPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNI 362 (394)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEE
T ss_pred ccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEE
Confidence 666666665432 2111 11123445555555433 22233334555555555555432 22 2333455555555555
Q ss_pred EccCCc
Q 037786 303 ELSHNS 308 (565)
Q Consensus 303 ~l~~~~ 308 (565)
++.++.
T Consensus 363 ~~~~~~ 368 (394)
T 4gt6_A 363 EYSGSR 368 (394)
T ss_dssp EESSCH
T ss_pred EECCce
Confidence 555543
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.37 E-value=7.9e-13 Score=115.12 Aligned_cols=14 Identities=7% Similarity=-0.156 Sum_probs=6.6
Q ss_pred cCCCCCCEEecCCC
Q 037786 56 FRLSNLQMVRLKFN 69 (565)
Q Consensus 56 ~~l~~L~~L~L~~~ 69 (565)
..+++|++|++++|
T Consensus 16 ~~~~~L~~L~l~~n 29 (176)
T 1a9n_A 16 TNAVRDRELDLRGY 29 (176)
T ss_dssp ECTTSCEEEECTTS
T ss_pred CCcCCceEEEeeCC
Confidence 34444455444444
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.9e-14 Score=128.17 Aligned_cols=119 Identities=22% Similarity=0.211 Sum_probs=78.8
Q ss_pred CCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcc--cCCCcccEEECCCCcccccCC
Q 037786 411 PPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQ--ISWKNLGYLDLRSNLLQGPLL 488 (565)
Q Consensus 411 ~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~ls~n~l~~~~~ 488 (565)
+++|++|++++|++++ .+ .+..+ ++|++|++++|.+..+|. ..+++|+.|++++|.+++ ++
T Consensus 47 l~~L~~L~ls~n~l~~-l~-~~~~l--------------~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~-l~ 109 (198)
T 1ds9_A 47 LKACKHLALSTNNIEK-IS-SLSGM--------------ENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-LS 109 (198)
T ss_dssp TTTCSEEECSEEEESC-CC-CHHHH--------------TTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC-HH
T ss_pred CCCCCEEECCCCCCcc-cc-ccccC--------------CCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc-CC
Confidence 5667777777776665 33 55555 677777777777776644 445677777777777665 22
Q ss_pred C--CCCCCcEeeccCceeeeccc-hhhhcCCCCCEEeCCCCcCcccCCCC----------CCCCCCCcccc
Q 037786 489 V--PPSSLRVILILNNQFTGEII-HSICDIIALDVLDLSNNRLSGTIPKC----------IGNFSPWCQTK 546 (565)
Q Consensus 489 ~--~~~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~p~~----------l~~l~~L~~l~ 546 (565)
. .+++|+.|++++|.+++..+ ..+..+++|++|++++|++.+.+|+. +..+++|+.|+
T Consensus 110 ~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 110 GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 2 56677777777777765332 45677777777777777777665553 56677777776
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=6.2e-14 Score=137.04 Aligned_cols=132 Identities=19% Similarity=0.058 Sum_probs=77.2
Q ss_pred CCCCeEEcCCCcccccCC----CCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCc
Q 037786 391 KNLKYLKLQSNLLQGPLP----VPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMK 466 (565)
Q Consensus 391 ~~L~~L~l~~n~~~~~~~----~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 466 (565)
++|++|++++|.+..... ..+++|++|++++|++++.....++..- ....++|++|++++|.+++..
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L---------~~~~~~L~~L~Ls~n~l~~~~ 171 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL---------LHDQCQITTLRLSNNPLTAAG 171 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH---------HSTTCCCCEEECCSSCCHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH---------HhcCCccceeeCCCCCCChHH
Confidence 455555555555543211 1144667777777777655555553220 001156777777777776531
Q ss_pred c-------cCCCcccEEECCCCcccccC-------CCCCCCCcEeeccCceeeecc----chhhhcCCCCCEEeCCCCcC
Q 037786 467 Q-------ISWKNLGYLDLRSNLLQGPL-------LVPPSSLRVILILNNQFTGEI----IHSICDIIALDVLDLSNNRL 528 (565)
Q Consensus 467 ~-------~~~~~L~~L~ls~n~l~~~~-------~~~~~~L~~L~l~~n~~~~~~----~~~l~~~~~L~~L~l~~n~~ 528 (565)
. ..+++|+.|++++|.+.+.. ....++|++|++++|.+++.. ...+...++|++|+|++|++
T Consensus 172 ~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 172 VAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 1 44667777777777775311 114567778888888776543 33445567788888888887
Q ss_pred ccc
Q 037786 529 SGT 531 (565)
Q Consensus 529 ~~~ 531 (565)
...
T Consensus 252 ~~~ 254 (372)
T 3un9_A 252 SSE 254 (372)
T ss_dssp CHH
T ss_pred CHH
Confidence 644
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.26 E-value=3.5e-14 Score=126.42 Aligned_cols=131 Identities=18% Similarity=0.263 Sum_probs=73.8
Q ss_pred cccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCC
Q 037786 54 NIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQL 133 (565)
Q Consensus 54 ~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L 133 (565)
.+..+++|++|++++| .+.+ ++.+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++. + .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n-~l~~-l~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTN-NIEK-ISSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-S-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEE-EESC-CCCHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCC-CCcc-ccccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCCCC
Confidence 4444444444444444 2222 222222255555555555555 4555555666777777777776653 2 56667777
Q ss_pred CeeeccCCcccccCC-cCccCCCCCCEEEccCccccccCcC-----------CcCCCCCCEEeccCCccc
Q 037786 134 AVLSLSFKSFSGHIP-PSLSNLHQLTDVDLGSNSFDGQFPD-----------IMNLTRISRLDISNNQLT 191 (565)
Q Consensus 134 ~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~-----------~~~~~~L~~L~l~~~~~~ 191 (565)
++|++++|.+....+ ..+..+++|+.|++++|.+....+. +..+++|+.|+ ++.++
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 777777777663221 3566677777777777776544322 55677777775 44443
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.8e-09 Score=106.96 Aligned_cols=130 Identities=8% Similarity=0.039 Sum_probs=53.1
Q ss_pred CccccCCCCCCEEEccccc---CcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCc-CCc
Q 037786 100 PDSICNLRHLRELHLSQCN---FYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFP-DIM 175 (565)
Q Consensus 100 ~~~~~~l~~L~~L~L~~~~---~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~ 175 (565)
..+|.+|.+|+.+.+..+. ++.....+|.++.+|+.+.+..+ ++.....+|..+.+|+.+.+.... ..... .+.
T Consensus 80 ~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~ 157 (394)
T 4gt6_A 80 SNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEGV-TSVADGMFS 157 (394)
T ss_dssp TTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTTC-CEECTTTTT
T ss_pred HHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccccccee-eeeccccee
Confidence 3444445555555444331 33333444555555554444332 222333344455555555554322 11211 144
Q ss_pred CCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEcc
Q 037786 176 NLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLS 234 (565)
Q Consensus 176 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~ 234 (565)
.+..|+.+.+..+ +..+....|.. ..|+.+.+..+-.. .....+..+..+......
T Consensus 158 ~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~~ 213 (394)
T 4gt6_A 158 YCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTITSD 213 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEEEEC
T ss_pred cccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccccceeccc
Confidence 4555555555432 22222333332 34555554433211 223344445555444443
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=5.7e-13 Score=130.21 Aligned_cols=105 Identities=18% Similarity=0.145 Sum_probs=59.3
Q ss_pred CCCCcEEEccccccCccchhhh----hhcCCCCCCccccccCCCCCcEEeCcCCCCCCCc-c------cCCCcccEEECC
Q 037786 411 PPRLQFLLASNNQFTGEIIQSI----CSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMK-Q------ISWKNLGYLDLR 479 (565)
Q Consensus 411 ~~~L~~L~l~~n~i~~~~~~~l----~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~------~~~~~L~~L~ls 479 (565)
.++|++|++++|.+++.....+ ... ++|++|+|++|.+.+.. . ..+++|+.|+++
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~--------------~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls 219 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGN--------------TSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVA 219 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTC--------------SSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECC
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcC--------------CCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECC
Confidence 3556666666666654333333 333 66777777777766541 0 345577777777
Q ss_pred CCcccccCC----C---CCCCCcEeeccCceeeeccchhhhcCCC-----CCEEe--CCCCcCc
Q 037786 480 SNLLQGPLL----V---PPSSLRVILILNNQFTGEIIHSICDIIA-----LDVLD--LSNNRLS 529 (565)
Q Consensus 480 ~n~l~~~~~----~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~-----L~~L~--l~~n~~~ 529 (565)
+|.+++... . ..++|++||+++|.+++.....++.+.. |+.+. +.+|.+.
T Consensus 220 ~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 220 YNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp SSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 777754211 1 4467788888888877666555544421 55666 5555554
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.22 E-value=7.6e-11 Score=101.61 Aligned_cols=101 Identities=23% Similarity=0.293 Sum_probs=45.5
Q ss_pred cEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCc
Q 037786 86 RCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSN 165 (565)
Q Consensus 86 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (565)
+.++++++.++ .+|..+ .++|++|++++|.++...+..|.++++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 34444444444 233332 244555555555554444444445555555555555544333334444444444444444
Q ss_pred cccccCcC-CcCCCCCCEEeccCCc
Q 037786 166 SFDGQFPD-IMNLTRISRLDISNNQ 189 (565)
Q Consensus 166 ~~~~~~~~-~~~~~~L~~L~l~~~~ 189 (565)
.+....+. +..+++|+.|++++|+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 44433332 3344444444444443
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.20 E-value=1.3e-10 Score=100.07 Aligned_cols=106 Identities=21% Similarity=0.205 Sum_probs=79.9
Q ss_pred CEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCC
Q 037786 62 QMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFK 141 (565)
Q Consensus 62 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~ 141 (565)
++++++++ .+....... .+.+++|++++|.+++..|..|..+++|++|++++|.++...+..|.++++|++|++++|
T Consensus 12 ~~l~~s~n-~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGK-SLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCC-CcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 45555555 333222111 266777777788888777788888899999999999888777777888999999999999
Q ss_pred cccccCCcCccCCCCCCEEEccCcccccc
Q 037786 142 SFSGHIPPSLSNLHQLTDVDLGSNSFDGQ 170 (565)
Q Consensus 142 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 170 (565)
.+.+..+..|..+++|+.|++++|.+...
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 88876666788889999999999887643
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.3e-10 Score=100.40 Aligned_cols=82 Identities=20% Similarity=0.276 Sum_probs=34.4
Q ss_pred CCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcC-CcCCCCCCEEec
Q 037786 107 RHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD-IMNLTRISRLDI 185 (565)
Q Consensus 107 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l 185 (565)
++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..|..+++|+.|++++|.+....+. +..+++|+.|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 4444444444444444444444444444444444444433233334444444444444444333332 333333333333
Q ss_pred cCC
Q 037786 186 SNN 188 (565)
Q Consensus 186 ~~~ 188 (565)
++|
T Consensus 113 ~~N 115 (174)
T 2r9u_A 113 YNN 115 (174)
T ss_dssp CSS
T ss_pred CCC
Confidence 333
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.4e-10 Score=98.83 Aligned_cols=89 Identities=19% Similarity=0.238 Sum_probs=71.9
Q ss_pred CCCcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEc
Q 037786 83 SPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDL 162 (565)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 162 (565)
+.|++|++++|.+++..|..|.++++|++|++++|.++...+..|.++++|++|++++|.+....+..+..+++|+.|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 66777777777887676778888888999999988888777777788889999999999888655556888889999999
Q ss_pred cCccccccC
Q 037786 163 GSNSFDGQF 171 (565)
Q Consensus 163 ~~~~~~~~~ 171 (565)
++|.+....
T Consensus 113 ~~N~~~c~~ 121 (174)
T 2r9u_A 113 YNNPWDCEC 121 (174)
T ss_dssp CSSCBCTTB
T ss_pred CCCCccccc
Confidence 988876433
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.4e-08 Score=100.09 Aligned_cols=287 Identities=11% Similarity=0.044 Sum_probs=156.0
Q ss_pred CCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCCCCCCEEEc
Q 037786 35 SSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHL 114 (565)
Q Consensus 35 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 114 (565)
.+|+.+.+... ++.+...+|.+|.+|+.+.+..+ .......+....+|+.+.+..+ ++.....+|..+ +|+.+.+
T Consensus 46 ~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~l 120 (379)
T 4h09_A 46 DRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADTKLQSYTGMER-VKKFGDYVFQGT-DLDDFEF 120 (379)
T ss_dssp GGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTCCCCEEEECTT-CCEECTTTTTTC-CCSEEEC
T ss_pred cCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCCCCceEECCce-eeEeccceeccC-CcccccC
Confidence 66777777553 66566677777888888877643 3322222223346666666433 332334455544 6777777
Q ss_pred ccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCcccccc-------------CcCCcCCCCCC
Q 037786 115 SQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQ-------------FPDIMNLTRIS 181 (565)
Q Consensus 115 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-------------~~~~~~~~~L~ 181 (565)
..+ +......+|.+. +++...+..+ ++.....++..+..++.+.+........ ...+.....+.
T Consensus 121 p~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (379)
T 4h09_A 121 PGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGT 197 (379)
T ss_dssp CTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCS
T ss_pred CCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccccccc
Confidence 643 333444455544 4555544433 3333445566667777666554332110 01133444555
Q ss_pred EEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccc--cCCCCCCCCCcEEEccCCc
Q 037786 182 RLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG--HLDAFPSKSLRKLYLTNNR 259 (565)
Q Consensus 182 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l~~~~ 259 (565)
.+.+..... ......+..+..++.+.+..+ +.......+..+..|+.+.+..+ +.. ......+..++.+.+...
T Consensus 198 ~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~- 273 (379)
T 4h09_A 198 EFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK- 273 (379)
T ss_dssp EEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-
T ss_pred cccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-
Confidence 555544322 234455666677777776544 22234456667777777777654 221 122225566777776543
Q ss_pred cccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCC
Q 037786 260 LHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAF 337 (565)
Q Consensus 260 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l 337 (565)
+.......+..|.+|+.+.+.++.+. .+...+|.+|.+|+.+.+..+ ++...... +..+.+|+.+.+..+ ++.+
T Consensus 274 i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~a-F~~C~~L~~i~ip~~-v~~I 347 (379)
T 4h09_A 274 VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYA-FKNCKALSTISYPKS-ITLI 347 (379)
T ss_dssp CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTT-TTTCTTCCCCCCCTT-CCEE
T ss_pred ceeccccccccccccccccccccccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHH-hhCCCCCCEEEECCc-cCEE
Confidence 33234446667777888877766654 334467777788888877643 33332222 366677777766543 4433
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.2e-08 Score=98.64 Aligned_cols=290 Identities=10% Similarity=0.075 Sum_probs=175.6
Q ss_pred HhhCCCCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCC
Q 037786 5 LVQNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSP 84 (565)
Q Consensus 5 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 84 (565)
++....+|+.+.+.. .++.+...+|.++ .+|+.+.+..+ ++.+...+|.++ .|+.+.+..+ .......+....+
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C-~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~~~ 114 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSC-YNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQGTD 114 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTC-TTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTTCC
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCC-CCCCEEEeCCc-ceEechhhhcCC-CCceEECCce--eeEeccceeccCC
Confidence 345566788888764 3566677778877 78888888654 655666777776 5777766543 3333333333367
Q ss_pred CcEEEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccc------------cCCcCcc
Q 037786 85 LRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSG------------HIPPSLS 152 (565)
Q Consensus 85 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------------~~~~~~~ 152 (565)
|+.+.+..+- +......|.++ +++...+.. .++.....+|..+..++...+....... .....+.
T Consensus 115 L~~i~lp~~~-~~i~~~~F~~~-~l~~~~~~~-~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (379)
T 4h09_A 115 LDDFEFPGAT-TEIGNYIFYNS-SVKRIVIPK-SVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYP 191 (379)
T ss_dssp CSEEECCTTC-CEECTTTTTTC-CCCEEEECT-TCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECC
T ss_pred cccccCCCcc-ccccccccccc-eeeeeeccc-eeeccccchhcccccccccccccccceeecccceecccccceecccc
Confidence 8888876542 22334445554 455555543 2444555667777777776665433210 1112334
Q ss_pred CCCCCCEEEccCccccccCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEE
Q 037786 153 NLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDID 232 (565)
Q Consensus 153 ~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~ 232 (565)
....+..+.+...........+..+..|+.+.+..+ +.......+..+..|+.+.+..+ +.......|..+.+|+.+.
T Consensus 192 ~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~ 269 (379)
T 4h09_A 192 AAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLN 269 (379)
T ss_dssp TTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEE
T ss_pred ccccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccc
Confidence 445566665554433222233666777777777554 33355566777788888887665 4334455677778888887
Q ss_pred ccCCccc-ccCCCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCC
Q 037786 233 LSDNQLT-GHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHN 307 (565)
Q Consensus 233 l~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~ 307 (565)
+..+--. +......+.+|+.+.+.++.++.....+|.+|.+|+.+.+..+ ++ .+...+|.+|.+|+.+.+..+
T Consensus 270 l~~~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 270 FYAKVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp ECCCCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCCCCCCTT
T ss_pred ccccceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHHhhCCCCCCEEEECCc
Confidence 7654211 1222236677888888777766555667888888888888654 32 344567888888888888654
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.98 E-value=3.6e-10 Score=110.09 Aligned_cols=125 Identities=14% Similarity=0.073 Sum_probs=66.1
Q ss_pred eEEcCCC-cccccCCCC--CCCCcEEEccc-cccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cc--
Q 037786 395 YLKLQSN-LLQGPLPVP--PPRLQFLLASN-NQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQ-- 467 (565)
Q Consensus 395 ~L~l~~n-~~~~~~~~~--~~~L~~L~l~~-n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~-- 467 (565)
.++++++ .+.. +|.. +++|++|+|++ |.+++..+..+..+ ++|++|+|++|.|+.+ |.
T Consensus 12 ~v~~~~~n~l~~-ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l--------------~~L~~L~l~~N~l~~~~~~~~ 76 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHHLPGAENLTELYIENQQHLQHLELRDLRGL--------------GELRNLTIVKSGLRFVAPDAF 76 (347)
T ss_dssp CEECCSSCCCTT-TTTSCSCSCCSEEECCSCSSCCEECGGGSCSC--------------CCCSEEECCSSCCCEECTTGG
T ss_pred EEEcCCCCCCCc-cCCCCCCCCeeEEEccCCCCCCCcChhHhccc--------------cCCCEEECCCCccceeCHHHh
Confidence 4566665 5554 2322 34566677764 66666555556555 6666777777766666 32
Q ss_pred cCCCcccEEECCCCcccccCCC--CCCCCcEeeccCceeeecc-chhhhcCCCCCEEeCCCCcCcccCCC
Q 037786 468 ISWKNLGYLDLRSNLLQGPLLV--PPSSLRVILILNNQFTGEI-IHSICDIIALDVLDLSNNRLSGTIPK 534 (565)
Q Consensus 468 ~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~n~~~~~~p~ 534 (565)
..+++|+.|+|++|.+++..+. ....|+.|++.+|.+...- ...|..........+..+..+|.-|.
T Consensus 77 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~ 146 (347)
T 2ifg_A 77 HFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQG 146 (347)
T ss_dssp GSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSS
T ss_pred cCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCCh
Confidence 5566666666666666653222 1122666666666664221 12233322222333344455555554
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.88 E-value=6.6e-09 Score=101.07 Aligned_cols=101 Identities=17% Similarity=0.219 Sum_probs=62.4
Q ss_pred EEccCC-ccCccCCccccCCCCCCEEEccc-ccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCc
Q 037786 88 LDVSGT-RFSGQLPDSICNLRHLRELHLSQ-CNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSN 165 (565)
Q Consensus 88 L~l~~~-~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 165 (565)
++++++ .++ .+|. +..+++|++|+|++ |.+....+..|.++++|+.|+|++|.+.+..+..|..+++|+.|++++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455555 555 3555 66666667777764 6666666666666666777777666666666666666666666666666
Q ss_pred cccccCcC-CcCCCCCCEEeccCCccc
Q 037786 166 SFDGQFPD-IMNLTRISRLDISNNQLT 191 (565)
Q Consensus 166 ~~~~~~~~-~~~~~~L~~L~l~~~~~~ 191 (565)
.+...++. +..++ |+.|++.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 66655544 22233 666666665544
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.82 E-value=3.3e-09 Score=102.60 Aligned_cols=60 Identities=22% Similarity=0.234 Sum_probs=30.1
Q ss_pred CCcccEEECCCCcccccCC------CCCCCCcEeeccCceeeecc----chhhhcCCCCCEEeCCCCcCc
Q 037786 470 WKNLGYLDLRSNLLQGPLL------VPPSSLRVILILNNQFTGEI----IHSICDIIALDVLDLSNNRLS 529 (565)
Q Consensus 470 ~~~L~~L~ls~n~l~~~~~------~~~~~L~~L~l~~n~~~~~~----~~~l~~~~~L~~L~l~~n~~~ 529 (565)
+|+|+.|++++|.+.+..+ ..+++|++|+++.|.+++.. +.++..+++|+.|++++|.+.
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 5555555555555542111 13455666666555555432 223344556666666665554
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.74 E-value=1e-08 Score=99.22 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=21.6
Q ss_pred CCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCc
Q 037786 491 PSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNR 527 (565)
Q Consensus 491 ~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 527 (565)
+++|+.|++++|.+++...+.+...- ...+++++++
T Consensus 306 l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 306 IKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp HTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred CCcceEEECCCCcCCHHHHHHHHHHc-CCEEEecCCc
Confidence 46666777777766655555554411 3557777776
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=3.3e-08 Score=86.16 Aligned_cols=109 Identities=12% Similarity=0.094 Sum_probs=62.2
Q ss_pred CCCCcEEEcccc-ccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCc-c------cCCCcccEEECCCCc
Q 037786 411 PPRLQFLLASNN-QFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMK-Q------ISWKNLGYLDLRSNL 482 (565)
Q Consensus 411 ~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~------~~~~~L~~L~ls~n~ 482 (565)
.+.|++|++++| .+.+.....++.. + ...++|++|+|++|.+.+.. . ...++|++|++++|.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~--------L--~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEA--------L--KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHH--------H--TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHH--------H--HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 455556666665 5554433333221 0 00156666666666665431 1 334566677777776
Q ss_pred ccccC-------CCCCCCCcEeec--cCceeeecc----chhhhcCCCCCEEeCCCCcCc
Q 037786 483 LQGPL-------LVPPSSLRVILI--LNNQFTGEI----IHSICDIIALDVLDLSNNRLS 529 (565)
Q Consensus 483 l~~~~-------~~~~~~L~~L~l--~~n~~~~~~----~~~l~~~~~L~~L~l~~n~~~ 529 (565)
+.+.- ....++|++|++ ++|.+++.. .+.+...++|++|+|++|.+.
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 65311 114567778888 777776653 345566688888888888775
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=8.9e-08 Score=83.42 Aligned_cols=35 Identities=11% Similarity=0.077 Sum_probs=16.5
Q ss_pred CCccEEEccCC-ccccc----CCccccCCCCCCEEecCCC
Q 037786 35 SSLTSLSLSYC-RIQGE----FPENIFRLSNLQMVRLKFN 69 (565)
Q Consensus 35 ~~L~~L~l~~~-~i~~~----~~~~~~~l~~L~~L~L~~~ 69 (565)
++|++|++++| .++.. +...+...++|++|+|++|
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n 75 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT 75 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC
Confidence 44555555555 44421 2233344455555555554
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.24 E-value=2.1e-07 Score=85.16 Aligned_cols=36 Identities=33% Similarity=0.375 Sum_probs=18.4
Q ss_pred CCCcEEeCcCCCCCCCcc-----cCCCcccEEECCCCcccc
Q 037786 450 DSLSYLNLSHNFITKMKQ-----ISWKNLGYLDLRSNLLQG 485 (565)
Q Consensus 450 ~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~ls~n~l~~ 485 (565)
++|++|+|++|.+.+++. ..+++|+.|++++|.+++
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~ 210 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS 210 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC
Confidence 555555555555555421 244555555555555543
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.20 E-value=4.8e-07 Score=76.55 Aligned_cols=84 Identities=11% Similarity=0.126 Sum_probs=57.9
Q ss_pred CCCcEEEccCCccCccCCccccCCCCCCEEEccccc-CcccCchhccCC----CCCCeeeccCCc-ccccCCcCccCCCC
Q 037786 83 SPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCN-FYGFLPASLGNV----TQLAVLSLSFKS-FSGHIPPSLSNLHQ 156 (565)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~-~~~~~~~~~~~l----~~L~~L~l~~~~-~~~~~~~~~~~l~~ 156 (565)
..|++||+++|.++......+..|++|++|+|++|. +++.....+..+ ++|++|++++|. +++.-...+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 467777777777776655667778888888888875 666555556554 468888888774 66443345566777
Q ss_pred CCEEEccCcc
Q 037786 157 LTDVDLGSNS 166 (565)
Q Consensus 157 L~~L~l~~~~ 166 (565)
|+.|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777775
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.03 E-value=8.1e-07 Score=75.15 Aligned_cols=84 Identities=14% Similarity=0.118 Sum_probs=45.2
Q ss_pred CccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEccCCccCccCCccccCC----CCCCE
Q 037786 36 SLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNL----RHLRE 111 (565)
Q Consensus 36 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l----~~L~~ 111 (565)
+|++|++++|.|++.....+..|++|++|+|++|.. +++.....+..+ ++|++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~-----------------------ItD~gL~~L~~~~~~~~~L~~ 118 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHY-----------------------IEDGCLERLSQLENLQKSMLE 118 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTT-----------------------CCHHHHHHHHTCHHHHHHCCE
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCc-----------------------cCHHHHHHHHhcccccCCCCE
Confidence 456666666665554445555555555555555532 333222333332 35666
Q ss_pred EEccccc-CcccCchhccCCCCCCeeeccCCc
Q 037786 112 LHLSQCN-FYGFLPASLGNVTQLAVLSLSFKS 142 (565)
Q Consensus 112 L~L~~~~-~~~~~~~~~~~l~~L~~L~l~~~~ 142 (565)
|++++|. +++.....+.++++|+.|++++|.
T Consensus 119 L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 119 MEIISCGNVTDKGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp EEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred EEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence 6666654 555545555566666666666653
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.01 E-value=9.3e-06 Score=74.23 Aligned_cols=61 Identities=30% Similarity=0.225 Sum_probs=41.7
Q ss_pred CCCCcEEEccccccCc--cchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cccCCC--cccEEECCCCcccc
Q 037786 411 PPRLQFLLASNNQFTG--EIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQISWK--NLGYLDLRSNLLQG 485 (565)
Q Consensus 411 ~~~L~~L~l~~n~i~~--~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~--~L~~L~ls~n~l~~ 485 (565)
+++|++|+|++|+|++ .++..+..+ ++|+.|+|++|.+.++ ....+. +|++|++++|.+.+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l--------------~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKA--------------PNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHS--------------TTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhC--------------CCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCcc
Confidence 5677777777777776 334555666 8888888888888877 323333 66667666666654
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=4.9e-06 Score=67.22 Aligned_cols=71 Identities=18% Similarity=0.160 Sum_probs=55.9
Q ss_pred cEEECCCCccc-ccCCC-CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCCCCCCCCCcccccCCCC
Q 037786 474 GYLDLRSNLLQ-GPLLV-PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSPWCQTKWPSRW 551 (565)
Q Consensus 474 ~~L~ls~n~l~-~~~~~-~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~l~~~~~~ 551 (565)
..++.+++.++ ..+|. .+++|++|+|++|.|+...+..|..+++|+.|+|++|++.|. |.+.|...|
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd-----------C~l~~l~~w 79 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD-----------CRLVPLRAW 79 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS-----------GGGHHHHHH
T ss_pred CEEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc-----------CccHHHHHH
Confidence 46777777776 23554 566788888888888877778889999999999999999987 777777777
Q ss_pred cccc
Q 037786 552 SATT 555 (565)
Q Consensus 552 ~~~~ 555 (565)
+...
T Consensus 80 l~~~ 83 (130)
T 3rfe_A 80 LAGR 83 (130)
T ss_dssp HHTS
T ss_pred HHhC
Confidence 6543
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.64 E-value=3e-05 Score=66.81 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=46.6
Q ss_pred CCCcEEeCcCCCCCCC-cc------cCCCcccEEECCCCccccc-------CCCCCCCCcEeeccCc---eeeec----c
Q 037786 450 DSLSYLNLSHNFITKM-KQ------ISWKNLGYLDLRSNLLQGP-------LLVPPSSLRVILILNN---QFTGE----I 508 (565)
Q Consensus 450 ~~L~~L~l~~n~l~~~-~~------~~~~~L~~L~ls~n~l~~~-------~~~~~~~L~~L~l~~n---~~~~~----~ 508 (565)
..|++|+|++|.|.+. .. .....|+.|++++|.|.+. ....-++|++|++++| .+++. +
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i 149 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM 149 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence 5666666666666654 11 2345667777777766531 1114456777777654 44432 4
Q ss_pred chhhhcCCCCCEEeCCCCcC
Q 037786 509 IHSICDIIALDVLDLSNNRL 528 (565)
Q Consensus 509 ~~~l~~~~~L~~L~l~~n~~ 528 (565)
.+.+...++|++|+++.|.+
T Consensus 150 a~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 150 MMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhCCCcCeEeccCCCc
Confidence 45667778888888876654
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00016 Score=62.39 Aligned_cols=35 Identities=14% Similarity=0.245 Sum_probs=16.7
Q ss_pred CCccEEEccCC-ccccc----CCccccCCCCCCEEecCCC
Q 037786 35 SSLTSLSLSYC-RIQGE----FPENIFRLSNLQMVRLKFN 69 (565)
Q Consensus 35 ~~L~~L~l~~~-~i~~~----~~~~~~~l~~L~~L~L~~~ 69 (565)
+.|++|+|+++ .|... +.+++.....|+.|+|++|
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n 80 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT 80 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC
Confidence 44555555553 44421 2333444455555555555
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0097 Score=47.64 Aligned_cols=12 Identities=25% Similarity=0.141 Sum_probs=5.0
Q ss_pred CcccEEECCCCc
Q 037786 471 KNLGYLDLRSNL 482 (565)
Q Consensus 471 ~~L~~L~ls~n~ 482 (565)
++|+.|+|++|.
T Consensus 55 ~~L~~L~L~~NP 66 (130)
T 3rfe_A 55 PALRTAHLGANP 66 (130)
T ss_dssp TTCCEEECCSSC
T ss_pred cccCEEEecCCC
Confidence 344444444443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 565 | ||||
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 3e-17 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 9e-09 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 4e-06 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 5e-16 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 7e-13 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-12 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 7e-04 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-15 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-15 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 3e-12 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 9e-11 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-06 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 6e-05 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 0.001 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 9e-13 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 9e-08 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-07 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 3e-06 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 0.003 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 1e-08 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 5e-08 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 2e-06 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 3e-05 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 9e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 3e-07 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 7e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 5e-04 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 8e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 3e-07 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 7e-05 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 6e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 8e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.001 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 4e-06 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 2e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 3e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 8e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 3e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 5e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 0.003 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 6e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 5e-04 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 5e-04 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 0.002 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 7e-04 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 0.002 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 0.002 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.002 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.002 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 0.002 |
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.2 bits (196), Expect = 3e-17
Identities = 57/258 (22%), Positives = 90/258 (34%), Gaps = 6/258 (2%)
Query: 32 NLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVS 91
+ ++ + L RI + NL ++ L N + L LD+S
Sbjct: 29 GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88
Query: 92 GTRFSGQL-PDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPS 150
+ P + L L LHL +C P + L L L + +
Sbjct: 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDT 148
Query: 151 LSNLHQLTDVDLGSNSFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRL 209
+L LT + L N L + RL + N++ P L L L L
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208
Query: 210 YNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFP-SKSLRKLYLTNNRLHGSIPSSI 268
+ N LS L L L+ + L+DN A P L+K +++ + S+P
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQR- 267
Query: 269 FELANLTYLSLASNNFSG 286
LA LA+N+ G
Sbjct: 268 --LAGRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.4 bits (129), Expect = 9e-09
Identities = 52/254 (20%), Positives = 79/254 (31%), Gaps = 7/254 (2%)
Query: 178 TRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQ 237
R+ + N+++ + +NL +L L++N L+ + L LL +DLSDN
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 238 LTGHLDAFP---SKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLA 294
+D L L+L L P LA L YL L N +
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL-PDDTFR 150
Query: 295 KLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSEN 354
L NL L L N +S +L P R L
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210
Query: 355 NIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPW--KNLKYLKLQSNLLQGPLPVPPP 412
N +P L +L L+ N + L+ + S+ + LP
Sbjct: 211 NNLSALPTEALA-PLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLA 269
Query: 413 RLQFLLASNNQFTG 426
+ N G
Sbjct: 270 GRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (108), Expect = 4e-06
Identities = 49/303 (16%), Positives = 85/303 (28%), Gaps = 38/303 (12%)
Query: 231 IDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEP 290
L P+ + ++++L NR+ +S NLT L L SN + I
Sbjct: 16 TSCPQQGLQAVPVGIPA-ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA 74
Query: 291 YMLAKLVNLAALELSHNSLSFGTTSKVNSSFP-QIFILSLSACNISAFPSFLRSLELAYL 349
+ + L + + L F L YL
Sbjct: 75 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134
Query: 350 DLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPV 409
L +N + + ++G L+ L L N I+ + + ++ L L V
Sbjct: 135 YLQDNALQALPDDTFRDLGN--LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192
Query: 410 PPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQIS 469
P + L + ++ L + +L YL L+ N +
Sbjct: 193 HPHAFRDLGRLMTLY--------LFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 244
Query: 470 W--KNLGYLDLRSNLLQGPLLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNR 527
L S+ + L P L D+ L+ N
Sbjct: 245 PLWAWLQKFRGSSSEVPCSL---PQRLA---------------------GRDLKRLAAND 280
Query: 528 LSG 530
L G
Sbjct: 281 LQG 283
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 77.7 bits (190), Expect = 5e-16
Identities = 75/361 (20%), Positives = 128/361 (35%), Gaps = 36/361 (9%)
Query: 35 SSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTR 94
+T+L I+ + + L+NL + N L+ + P N T L + ++ +
Sbjct: 44 DQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNN-QLTDITPLKNLTK-LVDILMNNNQ 99
Query: 95 FSGQLPDSICNLRHLRELHLSQCNFYGFLPAS---------------LGNVTQLAVLSLS 139
+ P + L +Q L + ++ L L
Sbjct: 100 IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL 159
Query: 140 FKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGS 199
L+NL L +D+ SN + LT + L +NNQ++ P
Sbjct: 160 SFGNQVTDLKPLANLTTLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDITPLGIL 218
Query: 200 GLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNR 259
NL L L N L L +L L D+DL++NQ++ L +L L N+
Sbjct: 219 --TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ 274
Query: 260 LHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNS 319
+ P LA LT L+ N + + + ++ L NL L L N++S S
Sbjct: 275 ISNISP-----LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS---DISPVS 326
Query: 320 SFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSH 379
S ++ L + +S S + +L N I P ++ L L+
Sbjct: 327 SLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLT----RITQLGLND 382
Query: 380 N 380
Sbjct: 383 Q 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 68.1 bits (165), Expect = 7e-13
Identities = 67/385 (17%), Positives = 129/385 (33%), Gaps = 30/385 (7%)
Query: 152 SNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYN 211
+ L + LG + +L +++ L + SI L NL + N
Sbjct: 19 TALAEKMKTVLGKTNVTD-TVSQTDLDQVTTLQADRLGIK-SIDGVEY-LNNLTQINFSN 75
Query: 212 NTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFEL 271
N L+ P L L L DI +++NQ+ +L L L NN++ P
Sbjct: 76 NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133
Query: 272 ANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSA 331
N LS + + + + ++ L+ TT +
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193
Query: 332 CNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIP-W 390
++ L + N I P + L L L+ N + ++ +
Sbjct: 194 AKLTNLE---------SLIATNNQISDITPLGILT----NLDELSLNGNQLKDIGTLASL 240
Query: 391 KNLKYLKLQSNLLQGPLPVP-PPRLQFLLASNNQFTGEIIQSICSSSTLE------IPSW 443
NL L L +N + P+ +L L NQ + + ++ T +
Sbjct: 241 TNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI 300
Query: 444 ISEIGKDSLSYLNLSHNFITKMKQIS-WKNLGYLDLRSNLLQGPL-LVPPSSLRVILILN 501
+L+YL L N I+ + +S L L +N + L +++ + +
Sbjct: 301 SPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGH 360
Query: 502 NQFTGEIIHSICDIIALDVLDLSNN 526
NQ + + ++ + L L++
Sbjct: 361 NQISDLT--PLANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 66.6 bits (161), Expect = 2e-12
Identities = 74/410 (18%), Positives = 145/410 (35%), Gaps = 45/410 (10%)
Query: 55 IFRLSNL-QMVRLKFN-SNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLREL 112
IF + L + ++ +N++ +++ + L D + L +L ++
Sbjct: 15 IFTDTALAEKMKTVLGKTNVTDTVSQTDLDQ-VTTLQADRLGIKS--IDGVEYLNNLTQI 71
Query: 113 HLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFP 172
+ S P L N+T+L + ++ + P + + +
Sbjct: 72 NFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 129
Query: 173 DIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDID 232
++ NL R+ + + ++ + + T L L L +D
Sbjct: 130 NLTNLNRLELSSNTISDISALSGLTSL--------QQLSFGNQVTDLKPLANLTTLERLD 181
Query: 233 LSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYM 292
+S N+++ +L L TNN++ P I NL LSL N I
Sbjct: 182 ISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKDIGT--- 236
Query: 293 LAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLS 352
LA L NL L+L++N +S S ++ L L A IS L L+L+
Sbjct: 237 LASLTNLTDLDLANNQIS---NLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELN 293
Query: 353 ENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI-PWKNLKYLKLQSNLLQGPLPVPP 411
EN ++ P L++L L N I+++ + L+ L +N + +
Sbjct: 294 ENQLEDISPISNL----KNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLAN 349
Query: 412 -PRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHN 460
+ +L A +NQ + + + ++ L L+
Sbjct: 350 LTNINWLSAGHNQISDLTPLANLTR----------------ITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 39.6 bits (91), Expect = 7e-04
Identities = 44/294 (14%), Positives = 84/294 (28%), Gaps = 16/294 (5%)
Query: 266 SSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIF 325
+ IF L + + + L + L+ + + +
Sbjct: 13 NQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGI---KSIDGVEYLNNLT 69
Query: 326 ILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEM 385
++ S ++ +L + ++ N I P + ++
Sbjct: 70 QINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANL---TNLTGLTLFNNQITDID 126
Query: 386 KQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWIS 445
NL L+L SN + + L+ NQ T + ++ S
Sbjct: 127 PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK 186
Query: 446 EIGKDSLSYLNLSHNFITKMKQIS-------WKNLGYLDLRSNLLQG-PLLVPPSSLRVI 497
L+ L + I QIS NL L L N L+ L ++L +
Sbjct: 187 VSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDL 246
Query: 498 LILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSPWCQTKWPSRW 551
+ NNQ + + + L L L N++S P +
Sbjct: 247 DLANNQISNLA--PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE 298
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 75.8 bits (185), Expect = 1e-15
Identities = 52/260 (20%), Positives = 86/260 (33%), Gaps = 16/260 (6%)
Query: 107 RHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNS 166
L L N+ L L L S P + + L +L + L N
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90
Query: 167 FDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYN--NTLSGTIPSWLFT 224
+ + L + N++T S +GL + V+ L SG
Sbjct: 91 LKELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148
Query: 225 LPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNF 284
+ L I ++D +T P SL +L+L N++ +S+ L NL L L+ N+
Sbjct: 149 MKKLSYIRIADTNITTIPQGLPP-SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207
Query: 285 SGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPS----- 339
S + EL N+ + I ++ L NISA S
Sbjct: 208 SA---VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 264
Query: 340 ---FLRSLELAYLDLSENNI 356
+ + + L N +
Sbjct: 265 PGYNTKKASYSGVSLFSNPV 284
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 75.8 bits (185), Expect = 1e-15
Identities = 46/286 (16%), Positives = 90/286 (31%), Gaps = 33/286 (11%)
Query: 32 NLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVS 91
+L L L +I + L NL L +
Sbjct: 28 DLPPDTALLDLQNNKITEIKDGDFKNLKNLH------------------------TLILI 63
Query: 92 GTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSL 151
+ S P + L L L+LS+ + +L V + L
Sbjct: 64 NNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL 123
Query: 152 SNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYN 211
+ + + S + + ++S + I++ +T +IP +L L L
Sbjct: 124 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDG 180
Query: 212 NTLSGTIPSWLFTLPLLRDIDLSDNQLTG-HLDAFPSKSLRKLYLTNNRLHGSIPSSIFE 270
N ++ + L L L + LS N ++ + + + NN +P + +
Sbjct: 181 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 240
Query: 271 LANLTYLSLASNNFSGI-----VEPYMLAKLVNLAALELSHNSLSF 311
+ + L +NN S I P K + + + L N + +
Sbjct: 241 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 286
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 65.4 bits (158), Expect = 3e-12
Identities = 49/231 (21%), Positives = 84/231 (36%), Gaps = 8/231 (3%)
Query: 178 TRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQ 237
+ LD+ NN++T L+NL L L NN +S P L L + LS NQ
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90
Query: 238 LTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGI-VEPYMLAKL 296
L L K+L++L + N + S L + + L +N +E +
Sbjct: 91 LK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149
Query: 297 VNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFP--SFLRSLELAYLDLSEN 354
L+ + ++ ++ T+ P + L L I+ S LA L LS N
Sbjct: 150 KKLSYIRIADTNI----TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205
Query: 355 NIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQG 405
+I + L+ + K ++ + L +N +
Sbjct: 206 SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA 256
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 60.8 bits (146), Expect = 9e-11
Identities = 51/256 (19%), Positives = 89/256 (34%), Gaps = 31/256 (12%)
Query: 7 QNVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRL 66
+N+ L L L +S + PG L L L LS +++ + L L++
Sbjct: 52 KNLKNLHTLILINNKISKISPGAFAPLVK-LERLYLSKNQLKELPEKMPKTLQELRVHEN 110
Query: 67 KFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRH------------------ 108
+ VF N + L + + SG + ++
Sbjct: 111 EITKVRKSVFNGLNQMIVV-ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL 169
Query: 109 ---LRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSN 165
L ELHL ASL + LA L LSF S S SL+N L ++ L +N
Sbjct: 170 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 229
Query: 166 SFDGQFPDIMNLTRISRLDISNNQLTG------SIPSHGSGLQNLAVLRLYNN--TLSGT 217
+ + I + + NN ++ P + + + + + L++N
Sbjct: 230 KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI 289
Query: 218 IPSWLFTLPLLRDIDL 233
PS + + + L
Sbjct: 290 QPSTFRCVYVRAAVQL 305
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 48.1 bits (113), Expect = 1e-06
Identities = 62/303 (20%), Positives = 91/303 (30%), Gaps = 58/303 (19%)
Query: 228 LRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGI 287
LR + SD L P L L NN++ L NL L L +N S I
Sbjct: 12 LRVVQCSDLGLEKVPKDLPP-DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70
Query: 288 VEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELA 347
P A LV L L LS N L + Q + + F ++
Sbjct: 71 -SPGAFAPLVKLERLYLSKNQLK--ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127
Query: 348 YLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPL 407
++L N + G LS++ ++ IT + Q +L L L N +
Sbjct: 128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVD 187
Query: 408 PVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQ 467
L L+ L LS N I+ +
Sbjct: 188 AASLKGLNN-----------------------------------LAKLGLSFNSISAVDN 212
Query: 468 ISWKNLGYLDLRSNLLQGPLLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNR 527
S N +L L LNN ++ + D + V+ L NN
Sbjct: 213 GSLANTPHLR-------------------ELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 253
Query: 528 LSG 530
+S
Sbjct: 254 ISA 256
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.7 bits (99), Expect = 6e-05
Identities = 45/223 (20%), Positives = 75/223 (33%), Gaps = 15/223 (6%)
Query: 326 ILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEM 385
++ S + P L + A LDL N I + L L L +N I+++
Sbjct: 14 VVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKN--LHTLILINNKISKI 70
Query: 386 KQI---PWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPS 442
P L+ L L N L+ P LQ L N+ T + +
Sbjct: 71 SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRK---------SVFN 121
Query: 443 WISEIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLLVPPSSLRVILILNN 502
++++ L L + I K L Y+ + + P SL + + N
Sbjct: 122 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGN 181
Query: 503 QFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSPWCQT 545
+ T S+ + L L LS N +S + N +
Sbjct: 182 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL 224
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 38.9 bits (89), Expect = 0.001
Identities = 35/187 (18%), Positives = 64/187 (34%), Gaps = 18/187 (9%)
Query: 371 TLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPP------PRLQFLLASNNQF 424
+ LDL +N ITE+K +KNLK L + + P +L+ L S NQ
Sbjct: 32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91
Query: 425 TGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQ 484
++P + E+ + + + Q+ LG L+S+ ++
Sbjct: 92 K---------ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE 142
Query: 485 GPLLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSPWCQ 544
L I I + T I + +L L L N+++ + + +
Sbjct: 143 NGAFQGMKKLSYIRIADTNIT-TIPQGLPP--SLTELHLDGNKITKVDAASLKGLNNLAK 199
Query: 545 TKWPSRW 551
Sbjct: 200 LGLSFNS 206
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 67.1 bits (162), Expect = 9e-13
Identities = 57/260 (21%), Positives = 99/260 (38%), Gaps = 28/260 (10%)
Query: 34 SSSLTSLSLSYCRIQGEF--PENIFRLSNLQMVRLKFNSNLSG-VFPRSNWTSPLRCLDV 90
+ + +L LS + + P ++ L L + + +NL G + P + L L +
Sbjct: 49 TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108
Query: 91 SGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPS 150
+ T SG +PD + ++ L L S G LP S+ ++ L ++ SG IP S
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168
Query: 151 LSNLHQLT-DVDLGSNSFDGQFPDIMNLTRISRLDISNNQL------------------- 190
+ +L + + N G+ P ++ +D+S N L
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228
Query: 191 ----TGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFP 246
+NL L L NN + GT+P L L L +++S N L G +
Sbjct: 229 AKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288
Query: 247 S-KSLRKLYLTNNRLHGSIP 265
+ + NN+ P
Sbjct: 289 NLQRFDVSAYANNKCLCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 51.7 bits (122), Expect = 9e-08
Identities = 55/271 (20%), Positives = 94/271 (34%), Gaps = 17/271 (6%)
Query: 176 NLTRISRLDISNNQLTG--SIPSHGSGLQNLAVLRLYNNT-LSGTIPSWLFTLPLLRDID 232
R++ LD+S L IPS + L L L + L G IP + L L +
Sbjct: 48 QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107
Query: 233 LSDNQLTGHLD--AFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEP 290
++ ++G + K+L L + N L G++P SI L NL ++ N SG +
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167
Query: 291 YMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLD 350
+ ++ +S N L+ + + N+ + +
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIP---PTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQ 224
Query: 351 LSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIP-----WKNLKYLKLQSNLLQG 405
+ + L+ LDL +N I +P K L L + N L G
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY--GTLPQGLTQLKFLHSLNVSFNNLCG 282
Query: 406 PLPVPP--PRLQFLLASNNQFTGEIIQSICS 434
+P R +NN+ C+
Sbjct: 283 EIPQGGNLQRFDVSAYANNKCLCGSPLPACT 313
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 51.3 bits (121), Expect = 1e-07
Identities = 57/271 (21%), Positives = 101/271 (37%), Gaps = 10/271 (3%)
Query: 116 QCNFYGFLPASLGNVTQLAVLSLSFKSFSG--HIPPSLSNLHQLTDVDLGSNSF--DGQF 171
+ G L + ++ L LS + IP SL+NL L + +G +
Sbjct: 35 NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94
Query: 172 PDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDI 231
P I LT++ L I++ ++G+IP S ++ L L N LSGT+P + +LP L I
Sbjct: 95 PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGI 154
Query: 232 DLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPY 291
N+++G + KL+ + + I L+ + + +
Sbjct: 155 TFDGNRISGAIPDSYGSF-SKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDA 213
Query: 292 MLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNIS-AFPSFLRSLE-LAYL 349
+ + ++ S + L L I P L L+ L L
Sbjct: 214 SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273
Query: 350 DLSENNIDGQIPNWMWEVGKDTLSFLDLSHN 380
++S NN+ G+IP ++N
Sbjct: 274 NVSFNNLCGEIPQGG---NLQRFDVSAYANN 301
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 47.1 bits (110), Expect = 3e-06
Identities = 43/271 (15%), Positives = 80/271 (29%), Gaps = 33/271 (12%)
Query: 273 NLTYLSLASNNFSGIVE-PYMLAKLVNLAALELS--HNSLSFGTTSKVNSSFPQIFILSL 329
+ L L+ N P LA L L L + +N + + + ++
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 330 SACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIP 389
+ + + + L LD S N + G +P +
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS----------------------- 147
Query: 390 WKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGK 449
NL + N + G +P L S + I + +++
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDL--- 204
Query: 450 DSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLLVPPSSLRVILILNNQFTGEII 509
S L + +L S + +L + + NN+ G +
Sbjct: 205 ---SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP 261
Query: 510 HSICDIIALDVLDLSNNRLSGTIPKCIGNFS 540
+ + L L++S N L G IP+ GN
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQ 291
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 37.4 bits (85), Expect = 0.003
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 1/63 (1%)
Query: 42 LSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPD 101
L RI G P+ + +L L + + FN NL G P+ + + P
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFN-NLCGEIPQGGNLQRFDVSAYANNKCLCGSPL 309
Query: 102 SIC 104
C
Sbjct: 310 PAC 312
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.6 bits (127), Expect = 1e-08
Identities = 52/207 (25%), Positives = 77/207 (37%), Gaps = 8/207 (3%)
Query: 80 NWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLS 139
+ + ++ + LP + + LHLS+ Y F A+L T+L L+L
Sbjct: 7 SKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63
Query: 140 FKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGS 199
L L +DL N L ++ LD+S N+LT
Sbjct: 64 --RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 200 GLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSK--SLRKLYLTN 257
GL L L L N L P L P L + L++N LT + +L L L
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181
Query: 258 NRLHGSIPSSIFELANLTYLSLASNNF 284
N L+ +IP F L + L N +
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.0 bits (123), Expect = 5e-08
Identities = 32/178 (17%), Positives = 50/178 (28%), Gaps = 3/178 (1%)
Query: 85 LRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFS 144
L +S ++ L +L+L + + L L LS
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQLQ 90
Query: 145 GHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNL 204
+ + + L + L + N+L P + L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 205 AVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQL-TGHLDAFPSKSLRKLYLTNNRLH 261
L L NN L+ L L L + L +N L T F S L +L N
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.4 bits (111), Expect = 2e-06
Identities = 34/182 (18%), Positives = 56/182 (30%), Gaps = 5/182 (2%)
Query: 32 NLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVS 91
+L T L LS + + + L + L + + T P+
Sbjct: 28 DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNL---DRAELTKLQVDGTLPVLGTLDL 84
Query: 92 GTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSL 151
LP L L L +S +L + +L L L P L
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 152 SNLHQLTDVDLGSNSFDGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLY 210
+ +L + L +N+ + L + L + N L +IP G L L+
Sbjct: 145 TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLH 203
Query: 211 NN 212
N
Sbjct: 204 GN 205
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (101), Expect = 3e-05
Identities = 37/221 (16%), Positives = 70/221 (31%), Gaps = 12/221 (5%)
Query: 228 LRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGI 287
+++ LT L K L+L+ N L+ +++ LT L+L + +
Sbjct: 12 HLEVNCDKRNLT-ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL 70
Query: 288 VEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELA 347
L L L SL + + + L++ + A EL
Sbjct: 71 QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 348 YLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQG-- 405
+ + ++ K +L+ +L+ + + NL L LQ N L
Sbjct: 131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE--NLDTLLLQENSLYTIP 188
Query: 406 PLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISE 446
L F N + +C+ L W+ +
Sbjct: 189 KGFFGSHLLPFAFLHGNPW-------LCNCEILYFRRWLQD 222
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (97), Expect = 9e-05
Identities = 39/209 (18%), Positives = 66/209 (31%), Gaps = 6/209 (2%)
Query: 150 SLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRL 209
+S + +V+ + PD+ T L +S N L + L L L
Sbjct: 5 EVSKVASHLEVNCDKRNLTALPPDLPKDTT--ILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 210 YNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIF 269
T TLP+L +DLS NQL + + + S+P
Sbjct: 63 DRA--ELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120
Query: 270 ELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSL 329
N + P +L L L L++N+L+ + + + + L L
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLL 179
Query: 330 SACNISAFPSFLRSLE-LAYLDLSENNID 357
++ P L + L N
Sbjct: 180 QENSLYTIPKGFFGSHLLPFAFLHGNPWL 208
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.7 bits (117), Expect = 3e-07
Identities = 50/273 (18%), Positives = 95/273 (34%), Gaps = 16/273 (5%)
Query: 182 RLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG- 240
LD++ L + + R + + + F+ ++ +DLS++ +
Sbjct: 4 TLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS 61
Query: 241 HLDAFPS--KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASN-NFSGIVEPYMLAKLV 297
L S L+ L L RL I +++ + +NL L+L+ FS +L+
Sbjct: 62 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121
Query: 298 NLAAL--ELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENN 355
L L + V I L+LS + S L +L +L +
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181
Query: 356 IDGQIPN----WMWEVGKDTLSFLDLSHNFITEMKQIPW----KNLKYLKLQSNLLQGPL 407
+ + + + L L LS + + + LK L++ + G L
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241
Query: 408 PVPPPRLQFLLASNNQFTGEIIQSICSSSTLEI 440
+ L L + + FT +I + EI
Sbjct: 242 QLLKEALPHLQINCSHFTTIARPTIGNKKNQEI 274
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (98), Expect = 7e-05
Identities = 39/239 (16%), Positives = 69/239 (28%), Gaps = 14/239 (5%)
Query: 136 LSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTG-SI 194
L L+ K+ + L + + + D + + R+ +D+SN+ + ++
Sbjct: 5 LDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL 63
Query: 195 PSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLY 254
S L L L LS I + L L ++LS S
Sbjct: 64 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123
Query: 255 LTNNRLHGSIPSSIFELANL---------TYLSLASNNFSGIVEPYMLAKLVNLAALELS 305
N + + LS N ++ + NL L+LS
Sbjct: 124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 183
Query: 306 HNSLSFGTTSKVNSSFPQIFILSLSACNI---SAFPSFLRSLELAYLDLSENNIDGQIP 361
+ + + + LSLS C L L + DG +
Sbjct: 184 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQ 242
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.7 bits (91), Expect = 5e-04
Identities = 31/221 (14%), Positives = 67/221 (30%), Gaps = 15/221 (6%)
Query: 10 TKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFN 69
++Q + L + + + S L +LSL R+ + + SNL + L
Sbjct: 46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 105
Query: 70 SNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGN 129
S S ++ +S R +++ + + ++Q N G+
Sbjct: 106 SGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK----- 160
Query: 130 VTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISN-N 188
+ + D+ + F + L + L +S
Sbjct: 161 ---------NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 211
Query: 189 QLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLR 229
+ + L L+++ GT+ LP L+
Sbjct: 212 DIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 252
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (90), Expect = 8e-04
Identities = 36/291 (12%), Positives = 75/291 (25%), Gaps = 30/291 (10%)
Query: 227 LLRDIDLSDNQLTGH-LDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFS 285
L + +DL+ L S+ + + + + F + ++ L+++
Sbjct: 1 LWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIE 59
Query: 286 GIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLE 345
+L++ L L L LS + + L+LS C
Sbjct: 60 VSTLHGILSQCSKLQNLSLEGLRLS-DPIVNTLAKNSNLVRLNLSGC------------- 105
Query: 346 LAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQG 405
+ + TE + L G
Sbjct: 106 --------SGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 157
Query: 406 PLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM 465
L + S + ++ L +L+LS +
Sbjct: 158 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY--LQHLSLSRCYDIIP 215
Query: 466 KQISW----KNLGYLDLRSNLLQGPLLVPPSSLRVILILNNQFTGEIIHSI 512
+ + L L + + G L + +L + I + FT +I
Sbjct: 216 ETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTIARPTI 266
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 47.0 bits (111), Expect = 3e-07
Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 3/105 (2%)
Query: 206 VLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIP 265
VL L + L T+ L L L+ +DLS N+L A + ++ ++ ++
Sbjct: 2 VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 59
Query: 266 SSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLS 310
L L L +N L L L L NSL
Sbjct: 60 GVANL-PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 103
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.5 bits (94), Expect = 7e-05
Identities = 30/126 (23%), Positives = 47/126 (37%), Gaps = 8/126 (6%)
Query: 110 RELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDG 169
R LHL+ + L + + L LS PP+L+ L L + S++
Sbjct: 1 RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQ-ASDNALE 56
Query: 170 QFPDIMNLTRISRLDISNNQLTG-SIPSHGSGLQNLAVLRLYNNTLS---GTIPSWLFTL 225
+ NL R+ L + NN+L + L +L L N+L G L
Sbjct: 57 NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116
Query: 226 PLLRDI 231
P + I
Sbjct: 117 PSVSSI 122
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.8 bits (87), Expect = 6e-04
Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 4/116 (3%)
Query: 229 RDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIV 288
R + L+ LT + L L++NRL P+ LA L L + + + +
Sbjct: 1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA----LAALRCLEVLQASDNALE 56
Query: 289 EPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSL 344
+A L L L L +N L + S P++ +L+L ++ L
Sbjct: 57 NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERL 112
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.4 bits (86), Expect = 8e-04
Identities = 24/106 (22%), Positives = 41/106 (38%), Gaps = 6/106 (5%)
Query: 326 ILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEM 385
+L L+ +++ + L + +LDLS N + P + L D + + +
Sbjct: 2 VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGV 61
Query: 386 KQIPWKNLKYLKLQSNLLQGPLPVPP----PRLQFLLASNNQFTGE 427
+P + L L +N LQ + P PRL L N E
Sbjct: 62 ANLPRL--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.0 bits (85), Expect = 0.001
Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 6/128 (4%)
Query: 276 YLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNIS 335
L LA + + + L +L+ + L+LSHN L + ++ + +L S +
Sbjct: 2 VLHLAHKDLTVLCH---LEQLLLVTHLDLSHNRLRALPPA--LAALRCLEVLQASDNALE 56
Query: 336 AFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKY 395
L L L N + V L L+L N + + + I + +
Sbjct: 57 NVDGVANLPRLQELLLCNNRLQQ-SAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115
Query: 396 LKLQSNLL 403
L S++L
Sbjct: 116 LPSVSSIL 123
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 46.7 bits (109), Expect = 4e-06
Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 8/91 (8%)
Query: 209 LYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSI 268
Y N S I S P L ++++S+N+L P L +L + N L +P
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPP--RLERLIASFNHL-AEVPEL- 322
Query: 269 FELANLTYLSLASNNFSGIVEPYMLAKLVNL 299
NL L + N P + + +L
Sbjct: 323 --PQNLKQLHVEYNPLREF--PDIPESVEDL 349
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 44.4 bits (103), Expect = 2e-05
Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 9/80 (11%)
Query: 321 FPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHN 380
P + L++S + P+ LE L S N++ ++P L L + +N
Sbjct: 283 PPSLEELNVSNNKLIELPALPPRLE--RLIASFNHL-AEVPELP-----QNLKQLHVEYN 334
Query: 381 FITEMKQIPWKNLKYLKLQS 400
+ E IP ++++ L++ S
Sbjct: 335 PLREFPDIP-ESVEDLRMNS 353
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 43.7 bits (101), Expect = 3e-05
Identities = 58/343 (16%), Positives = 114/343 (33%), Gaps = 32/343 (9%)
Query: 156 QLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLS 215
Q +++L + P++ + L S N LT +P Q+L L + NN
Sbjct: 39 QAHELELNNLGL-SSLPEL--PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNN--- 88
Query: 216 GTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLT 275
+ + PLL + +S+NQL + S L+ + + NN L
Sbjct: 89 -NLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAA 147
Query: 276 YLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNIS 335
+ P++ A + +L+ + + ++ + + ++
Sbjct: 148 GNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLT 207
Query: 336 AFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKY 395
+ L+ N++ ++ + S L + Y
Sbjct: 208 TIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLY 267
Query: 396 LKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYL 455
S+ L PP L+ L SNN+ E+P+ L L
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLI-------------ELPALPP-----RLERL 309
Query: 456 NLSHNFITKMKQISWKNLGYLDLRSNLLQGPLLVPPS--SLRV 496
S N + ++ ++ +NL L + N L+ +P S LR+
Sbjct: 310 IASFNHLAEVPELP-QNLKQLHVEYNPLREFPDIPESVEDLRM 351
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 42.5 bits (98), Expect = 8e-05
Identities = 44/321 (13%), Positives = 94/321 (29%), Gaps = 21/321 (6%)
Query: 228 LRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGI 287
+++L++ L+ + P L L + N L +P +L L + +NN +
Sbjct: 40 AHELELNNLGLSSLPELPPH--LESLVASCNSLT-ELPELPQ---SLKSLLVDNNNLKAL 93
Query: 288 VEPYMLAKLVNLA----ALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRS 343
+ L + + ++ + SF V+++ + + A +
Sbjct: 94 SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153
Query: 344 LELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLL 403
+L N + ++ LS + + +NL +L
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213
Query: 404 QGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFIT 463
+P + + + S T S G L N +
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 273
Query: 464 ---KMKQISWKNLGYLDLRSNLLQGPLLVPPSSLRVILILNNQFTGEIIHSICDIIA-LD 519
+ +L L++ +N L L P L ++ N + ++ L
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLERLIASFNHLA-----EVPELPQNLK 327
Query: 520 VLDLSNNRLSGTIPKCIGNFS 540
L + N L P +
Sbjct: 328 QLHVEYNPLR-EFPDIPESVE 347
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 41.0 bits (94), Expect = 3e-04
Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 10/97 (10%)
Query: 254 YLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGT 313
N I S +L L++++N + A L L S N L
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIEL-----PALPPRLERLIASFNHL---- 316
Query: 314 TSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLD 350
++V + L + + FP S+E ++
Sbjct: 317 -AEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMN 352
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 40.2 bits (92), Expect = 5e-04
Identities = 63/344 (18%), Positives = 123/344 (35%), Gaps = 23/344 (6%)
Query: 78 RSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLS 137
R L+++ S LP+ +L L S CN LP ++ L V +
Sbjct: 33 RDCLDRQAHELELNNLGLS-SLPELPPHLES---LVAS-CNSLTELPELPQSLKSLLVDN 87
Query: 138 LSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSH 197
+ +LS+L L + SN+ + P++ N + + +D+ NN L
Sbjct: 88 NNL--------KALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP 139
Query: 198 GSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTN 257
S A +L + + L L++ + + L
Sbjct: 140 PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE 199
Query: 258 NRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKV 317
+ + + + L L + + + L+ +S S +
Sbjct: 200 LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGL 259
Query: 318 NSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDL 377
+ P ++ L+ S+ I + SLE L++S N + ++P L L
Sbjct: 260 SELPPNLYYLNASSNEIRSLCDLPPSLE--ELNVSNNKLI-ELPALPPR-----LERLIA 311
Query: 378 SHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASN 421
S N + E+ ++P +NLK L ++ N L+ P P ++ L ++
Sbjct: 312 SFNHLAEVPELP-QNLKQLHVEYNPLRE-FPDIPESVEDLRMNS 353
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 37.5 bits (85), Expect = 0.003
Identities = 46/297 (15%), Positives = 88/297 (29%), Gaps = 15/297 (5%)
Query: 248 KSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHN 307
+ +L L N L S+P +L L + N+ + + E K + + L
Sbjct: 38 RQAHELELNNLGLS-SLPELP---PHLESLVASCNSLTELPELPQSLKSLLVDNNNLKAL 93
Query: 308 SLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEV 367
S + S Q+ L + + + L L +++
Sbjct: 94 SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153
Query: 368 GKDTLSFLDLSHNFITEMKQI------PWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASN 421
L L + + P + + L + P P L + A N
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213
Query: 422 NQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSN 481
N + ++++++ + S L + Y S+
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 273
Query: 482 LLQGPLLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGN 538
L P SL + + NN+ E+ L+ L S N L+ +P+ N
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPELPQN 325
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (102), Expect = 3e-05
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 12/94 (12%)
Query: 180 ISRLDISNNQLTGSIPSH-GSGLQNLAVLRLYNNTLSG----TIPSWLFTLPLLRDIDLS 234
I LDI +L+ + + LQ V+RL + L+ I S L P L +++L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 235 DNQLT-------GHLDAFPSKSLRKLYLTNNRLH 261
N+L PS ++KL L N L
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (100), Expect = 6e-05
Identities = 47/462 (10%), Positives = 107/462 (23%), Gaps = 29/462 (6%)
Query: 85 LRCLDVSGTRFS-GQLPDSICNLRHLRELHLSQCNF----YGFLPASLGNVTQLAVLSLS 139
++ LD+ S + + + L+ + + L C + ++L LA L+L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 140 FKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGS 199
+ Q + S +S + L S
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123
Query: 200 GLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNR 259
L L + + K L N
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183
Query: 260 LHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNS 319
+ + + +L + + + + ++K+
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCG---VTSDNCRDLCGIVASKASLRELALGSNKLGD 240
Query: 320 SFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSH 379
L + ++ + + + + E+ D
Sbjct: 241 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 300
Query: 380 NFITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLE 439
+ E P L+ L ++S + + + +
Sbjct: 301 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVREL 360
Query: 440 IPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLLVPPSSLRVILI 499
L L L+ ++ + L + LL SLR + +
Sbjct: 361 CQGLGQ--PGSVLRVLWLADCDVS--------DSSCSSLAATLLANH------SLRELDL 404
Query: 500 LNNQFTGEIIHSICDIIA-----LDVLDLSNNRLSGTIPKCI 536
NN I + + + L+ L L + S + +
Sbjct: 405 SNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL 446
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.3 bits (97), Expect = 1e-04
Identities = 17/103 (16%), Positives = 39/103 (37%), Gaps = 9/103 (8%)
Query: 297 VNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNIS-----AFPSFLRSLE-LAYLD 350
+++ +L++ LS +++ Q ++ L C ++ S LR LA L+
Sbjct: 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61
Query: 351 LSENNIDGQIPNWMWEVGKD---TLSFLDLSHNFITEMKQIPW 390
L N + + + + + + L L + +T
Sbjct: 62 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 104
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (92), Expect = 5e-04
Identities = 23/201 (11%), Positives = 52/201 (25%), Gaps = 7/201 (3%)
Query: 203 NLAVLRLYNNTLSGTIPSWLFT-LPLLRDIDLSDNQLTG-HLDAFPS-----KSLRKLYL 255
++ L + LS + L L + + L D LT S +L +L L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 256 TNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTS 315
+N L + + + + +++ L + +
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122
Query: 316 KVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFL 375
+ + Q+ L L L+ + E+
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 182
Query: 376 DLSHNFITEMKQIPWKNLKYL 396
+ + + + L+ L
Sbjct: 183 EAGVRVLCQGLKDSPCQLEAL 203
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 39.9 bits (91), Expect = 5e-04
Identities = 31/327 (9%), Positives = 86/327 (26%), Gaps = 17/327 (5%)
Query: 161 DLGSNSFDGQFPDIMNLTRISRLDISNNQLTG----SIPSHGSGLQNLAVLRLYNNTLSG 216
+ + F ++ + + +S N + + + + ++L + +
Sbjct: 14 AITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGR 73
Query: 217 TIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANL-- 274
L LL L +L + + + L P L N
Sbjct: 74 VKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 133
Query: 275 --TYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSAC 332
+ + + L ++ N L G+ + +F +L
Sbjct: 134 GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKM 193
Query: 333 NISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKN 392
+ L + + + ++ +
Sbjct: 194 VQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 253
Query: 393 LKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSL 452
L + + ++ + LQ L N+ + ++++ + ++P L
Sbjct: 254 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD---------L 304
Query: 453 SYLNLSHNFITKMKQISWKNLGYLDLR 479
+L L+ N ++ + + R
Sbjct: 305 LFLELNGNRFSEEDDVVDEIREVFSTR 331
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 38.3 bits (87), Expect = 0.002
Identities = 35/312 (11%), Positives = 80/312 (25%), Gaps = 28/312 (8%)
Query: 245 FPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSG---IVEPYMLAKLVNLAA 301
KSL+ +T S+ + + E ++ + L+ N +A +L
Sbjct: 5 IEGKSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63
Query: 302 LELSHNSLS------------FGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYL 349
E S + + + + P + L
Sbjct: 64 AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123
Query: 350 DLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPV 409
+ + +G P ++ + + L+ S
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 183
Query: 410 PPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQIS 469
L + N E I+ + +D+ S +K
Sbjct: 184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 243
Query: 470 WKNLGYL-------DLRSNLLQGPLLVPPSSLRVILILNNQFTGEIIHSICDIIA----- 517
L + ++ + L+ + + N+ + + ++ +I
Sbjct: 244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD 303
Query: 518 LDVLDLSNNRLS 529
L L+L+ NR S
Sbjct: 304 LLFLELNGNRFS 315
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 38.6 bits (88), Expect = 7e-04
Identities = 31/178 (17%), Positives = 53/178 (29%), Gaps = 4/178 (2%)
Query: 249 SLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNS 308
+ T L IP I + T L L N I + +L +L LEL N
Sbjct: 9 EGTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ 65
Query: 309 LSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSL-ELAYLDLSENNIDGQIPNWMWEV 367
L+ + + + L +L L+L +N I +P +
Sbjct: 66 LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125
Query: 368 GKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFT 425
T L + + L+ L + P +Q +++F
Sbjct: 126 NSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFK 183
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.2 bits (85), Expect = 0.002
Identities = 25/135 (18%), Positives = 46/135 (34%), Gaps = 8/135 (5%)
Query: 149 PSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLR 208
+N + ++DL L + +D S+N++ L+ L L
Sbjct: 12 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRLKTLL 69
Query: 209 LYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLY------LTNNRLHG 262
+ NN + LP L ++ L++N L D P SL+ L
Sbjct: 70 VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH 129
Query: 263 SIPSSIFELANLTYL 277
I+++ + L
Sbjct: 130 YRLYVIYKVPQVRVL 144
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.1 bits (84), Expect = 0.002
Identities = 26/138 (18%), Positives = 41/138 (29%), Gaps = 3/138 (2%)
Query: 149 PSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPS-HGSGLQNLAVL 207
P H + + + + ++ L I N Q + GL L L
Sbjct: 2 PDACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNL 61
Query: 208 RLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG-HLDAFPSKSLRKLYLTNNRLHGSIPS 266
+ + L P P L ++LS N L SL++L L+ N LH S
Sbjct: 62 TIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCAL 121
Query: 267 SIF-ELANLTYLSLASNN 283
+
Sbjct: 122 RWLQRWEEEGLGGVPEQK 139
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 38.1 bits (87), Expect = 0.002
Identities = 36/218 (16%), Positives = 72/218 (33%), Gaps = 22/218 (10%)
Query: 8 NVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLK 67
+ + +++ V T +L +T+LS + E + L+NL + LK
Sbjct: 17 ALANAIKIAAGKSNVTDTV--TQADLDG-ITTLSAFGTGVTTI--EGVQYLNNLIGLELK 71
Query: 68 FNSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRH-------LRELHLSQCNFY 120
N ++ L + + + L+ +
Sbjct: 72 DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131
Query: 121 GFLPASLGNVTQLAVL-------SLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPD 173
L L +T ++ L LS + L+NL +LT + N
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD-ISP 190
Query: 174 IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYN 211
+ +L + + + NNQ++ P + NL ++ L N
Sbjct: 191 LASLPNLIEVHLKNNQISDVSPL--ANTSNLFIVTLTN 226
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 37.7 bits (86), Expect = 0.002
Identities = 40/238 (16%), Positives = 82/238 (34%), Gaps = 17/238 (7%)
Query: 69 NSNLSGVFPRSNWTSPLRCLDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLG 128
+ ++ +FP + ++ + + + + + +L + L +
Sbjct: 6 PTAINVIFPDPALANAIK-IAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQ 60
Query: 129 NVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNN 188
+ L L L L NL ++T+++L N + + S
Sbjct: 61 YLNNLIGLELKDNQI--TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQ 118
Query: 189 QLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSK 248
+ + S LQ L Y + T S L L L+ + + + Q++
Sbjct: 119 ITDVTPLAGLSNLQVL-----YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLS 173
Query: 249 SLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSH 306
L L +N++ P + L NL + L +N S + LA NL + L++
Sbjct: 174 KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLTN 226
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 37.7 bits (86), Expect = 0.002
Identities = 27/177 (15%), Positives = 60/177 (33%), Gaps = 13/177 (7%)
Query: 35 SSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGTR 94
+S+ + + I+ I L N+ + L N L+ + P +N +
Sbjct: 46 NSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGN-KLTDIKPLANLKNLGWLFLDENKV 102
Query: 95 FSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNL 154
+ L+ L H + G + L ++ + + +
Sbjct: 103 KDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLS 162
Query: 155 HQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYN 211
+ ++ + LT++ L +S N ++ +GL+NL VL L++
Sbjct: 163 LE--------DNQISDIVPLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFS 209
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 565 | |||
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.95 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.94 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.9 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.89 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.89 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.89 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.88 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.87 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.84 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.84 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.82 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.81 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.75 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.74 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.73 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.71 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.71 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.7 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.65 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.63 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.62 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.58 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.57 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.56 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.54 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.53 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.51 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.46 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.4 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.39 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.39 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.38 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.2 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.09 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.08 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.0 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.25 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.24 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.99 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.68 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.55 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.11 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.95 E-value=6.9e-26 Score=223.31 Aligned_cols=338 Identities=23% Similarity=0.269 Sum_probs=166.5
Q ss_pred CCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEE
Q 037786 129 NVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLR 208 (565)
Q Consensus 129 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 208 (565)
.+.+|+.|+++++.++. + +.+..+++|++|++++|.++... .++.+++|++|++++|++.+.. .+..+++|+.++
T Consensus 42 ~l~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~~l~-~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~ 116 (384)
T d2omza2 42 DLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLT 116 (384)
T ss_dssp HHTTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEE
T ss_pred HhCCCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCCCCc-cccCCccccccccccccccccc--cccccccccccc
Confidence 45566666666666653 2 34556666666666666665432 3555666666666666555322 244555555555
Q ss_pred cccccccCCCchhhcCCCCCCEEEccCCcccccCCCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCcc
Q 037786 209 LYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIV 288 (565)
Q Consensus 209 l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 288 (565)
++++.+.... .......+.......+.+............+... .+....
T Consensus 117 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-------------------------~~~~~~--- 166 (384)
T d2omza2 117 LFNNQITDID--PLKNLTNLNRLELSSNTISDISALSGLTSLQQLS-------------------------FGNQVT--- 166 (384)
T ss_dssp CCSSCCCCCG--GGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEE-------------------------EEESCC---
T ss_pred cccccccccc--cccccccccccccccccccccccccccccccccc-------------------------cccccc---
Confidence 5555544221 1222333344443333332211111100000000 000000
Q ss_pred ChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhC
Q 037786 289 EPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVG 368 (565)
Q Consensus 289 ~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 368 (565)
....+.............+.... ......++.++.+++++|.++.++......+|+++++++|.+++ ++ .+. .
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~-~~-~l~--~ 239 (384)
T d2omza2 167 DLKPLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD-IG-TLA--S 239 (384)
T ss_dssp CCGGGTTCTTCCEEECCSSCCCC---CGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC-CG-GGG--G
T ss_pred hhhhhcccccccccccccccccc---ccccccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCC-cc-hhh--c
Confidence 00112222333333333332211 11123445555556665555555444333456666666665552 22 111 3
Q ss_pred CCCccEEEcCCCccCCccCC-CCCCCCeEEcCCCcccccCCC-CCCCCcEEEccccccCccchhhhhhcCCCCCCccccc
Q 037786 369 KDTLSFLDLSHNFITEMKQI-PWKNLKYLKLQSNLLQGPLPV-PPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISE 446 (565)
Q Consensus 369 ~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~l~~n~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~ 446 (565)
++.++.+++++|.++.+++. .+++|++|+++++++.+..+. .++.++.+++++|++++. ..+..+
T Consensus 240 l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~--~~~~~~----------- 306 (384)
T d2omza2 240 LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDI--SPISNL----------- 306 (384)
T ss_dssp CTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCC--GGGGGC-----------
T ss_pred ccccchhccccCccCCCCcccccccCCEeeccCcccCCCCccccccccccccccccccccc--cccchh-----------
Confidence 45666666666666655442 455666666666665543222 255666666666666542 234444
Q ss_pred cCCCCCcEEeCcCCCCCCC-cccCCCcccEEECCCCcccccC-CCCCCCCcEeeccCceeeeccchhhhcCCCCCEEeCC
Q 037786 447 IGKDSLSYLNLSHNFITKM-KQISWKNLGYLDLRSNLLQGPL-LVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLS 524 (565)
Q Consensus 447 ~~~~~L~~L~l~~n~l~~~-~~~~~~~L~~L~ls~n~l~~~~-~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 524 (565)
+++++|++++|+++++ +...+++|++|++++|++++.. ...+++|++|++++|++++..| ++++++|+.|+|+
T Consensus 307 ---~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~ 381 (384)
T d2omza2 307 ---KNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLN 381 (384)
T ss_dssp ---TTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECC
T ss_pred ---cccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCCChhHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCC
Confidence 6666666666666666 3356666666666666665421 1255666666666666665443 5666666666666
Q ss_pred CC
Q 037786 525 NN 526 (565)
Q Consensus 525 ~n 526 (565)
+|
T Consensus 382 ~N 383 (384)
T d2omza2 382 DQ 383 (384)
T ss_dssp CE
T ss_pred CC
Confidence 65
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.94 E-value=3.4e-25 Score=218.26 Aligned_cols=352 Identities=24% Similarity=0.299 Sum_probs=201.1
Q ss_pred ccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccc
Q 037786 90 VSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDG 169 (565)
Q Consensus 90 l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 169 (565)
++.+.+++.+. ...+.+|++|+++++.++.. ..+..+++|++|++++|++++. + .++++++|++|++++|.+..
T Consensus 29 l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~~ 102 (384)
T d2omza2 29 LGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIAD 102 (384)
T ss_dssp TTCSSTTSEEC--HHHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC
T ss_pred hCCCCCCCccC--HHHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCC-c-cccCCccccccccccccccc
Confidence 34444443322 24567899999999999864 5688999999999999999854 3 48899999999999999875
Q ss_pred cCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCCCCCC
Q 037786 170 QFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKS 249 (565)
Q Consensus 170 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 249 (565)
. +.++.+++|+.++++++.+.+... ......+.......+.+.......................... ......
T Consensus 103 i-~~l~~l~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 176 (384)
T d2omza2 103 I-TPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP---LANLTT 176 (384)
T ss_dssp C-GGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGG---GTTCTT
T ss_pred c-cccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccchhhh---hccccc
Confidence 4 348899999999999998875433 3445677888888777654333222222222222222222211 112222
Q ss_pred CcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEc
Q 037786 250 LRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSL 329 (565)
Q Consensus 250 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l 329 (565)
........+... .......+++++.+++++|.+.+.. ....+++|++|++++|.++... . ...+++++.+++
T Consensus 177 ~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~---~~~~~~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l 248 (384)
T d2omza2 177 LERLDISSNKVS--DISVLAKLTNLESLIATNNQISDIT---PLGILTNLDELSLNGNQLKDIG--T-LASLTNLTDLDL 248 (384)
T ss_dssp CCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCG---GGGGCTTCCEEECCSSCCCCCG--G-GGGCTTCSEEEC
T ss_pred cccccccccccc--cccccccccccceeeccCCccCCCC---cccccCCCCEEECCCCCCCCcc--h-hhcccccchhcc
Confidence 333333333332 2334556667777777777766442 2355667777777777665421 1 245566666666
Q ss_pred CCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCC-CCCCCCeEEcCCCcccccCC
Q 037786 330 SACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI-PWKNLKYLKLQSNLLQGPLP 408 (565)
Q Consensus 330 ~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~l~~n~~~~~~~ 408 (565)
++|.++.++.+....+|+.++++++.+.+ ++. +. .++.++.++++.|.++.+... .+++++.|++++|++.+..+
T Consensus 249 ~~n~l~~~~~~~~~~~L~~L~l~~~~l~~-~~~-~~--~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~ 324 (384)
T d2omza2 249 ANNQISNLAPLSGLTKLTELKLGANQISN-ISP-LA--GLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP 324 (384)
T ss_dssp CSSCCCCCGGGTTCTTCSEEECCSSCCCC-CGG-GT--TCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG
T ss_pred ccCccCCCCcccccccCCEeeccCcccCC-CCc-cc--cccccccccccccccccccccchhcccCeEECCCCCCCCCcc
Confidence 66666665554444466666666665552 221 11 345555555555555554432 44455555555555543321
Q ss_pred -CCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cccCCCcccEEECCCC
Q 037786 409 -VPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQISWKNLGYLDLRSN 481 (565)
Q Consensus 409 -~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~L~~L~ls~n 481 (565)
..+++|++|++++|++++. ..+..+ ++|++|++++|+++++ |...+++|+.|++++|
T Consensus 325 l~~l~~L~~L~L~~n~l~~l--~~l~~l--------------~~L~~L~l~~N~l~~l~~l~~l~~L~~L~L~~N 383 (384)
T d2omza2 325 VSSLTKLQRLFFANNKVSDV--SSLANL--------------TNINWLSAGHNQISDLTPLANLTRITQLGLNDQ 383 (384)
T ss_dssp GGGCTTCCEEECCSSCCCCC--GGGGGC--------------TTCCEEECCSSCCCBCGGGTTCTTCSEEECCCE
T ss_pred cccCCCCCEEECCCCCCCCC--hhHcCC--------------CCCCEEECCCCcCCCChhhccCCCCCEeeCCCC
Confidence 2244455555555544431 123333 4455555555544444 2344444444444443
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.90 E-value=1.1e-23 Score=200.79 Aligned_cols=223 Identities=30% Similarity=0.479 Sum_probs=137.2
Q ss_pred CCCcEEEccC-CccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEE
Q 037786 83 SPLRCLDVSG-TRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVD 161 (565)
Q Consensus 83 ~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 161 (565)
+.|++|++++ |.+++.+|..|.++++|++|++++|.+.+..+..+..+.+|+.+++++|.+...+|..+..++.++.++
T Consensus 76 ~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~ 155 (313)
T d1ogqa_ 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred ccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceee
Confidence 3333344433 455556666677777777777777777666666666777777777777766666666677777777777
Q ss_pred ccCccccccCcC-CcCCCCC-CEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCccc
Q 037786 162 LGSNSFDGQFPD-IMNLTRI-SRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLT 239 (565)
Q Consensus 162 l~~~~~~~~~~~-~~~~~~L-~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~ 239 (565)
+++|.+.+..+. +..+..+ +.+++++|++++..+..+..+. ...+++..+...+..+..+..+++++.+++.++.+.
T Consensus 156 l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~-~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~ 234 (313)
T d1ogqa_ 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence 777766544443 5555444 6666677766666555555443 335666666666556666666667777777766665
Q ss_pred ccCCCC-CCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCc
Q 037786 240 GHLDAF-PSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNS 308 (565)
Q Consensus 240 ~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~ 308 (565)
...+.. ..+.++.|++++|++++.+|..+.++++|++|++++|++++.++ .++.+++|+.+++++|+
T Consensus 235 ~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP--~~~~L~~L~~l~l~~N~ 302 (313)
T d1ogqa_ 235 FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP--QGGNLQRFDVSAYANNK 302 (313)
T ss_dssp CBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC--CSTTGGGSCGGGTCSSS
T ss_pred ccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCC--CcccCCCCCHHHhCCCc
Confidence 444332 34566666666666666666666666666666666666665444 23445555555565554
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.89 E-value=1.1e-21 Score=186.01 Aligned_cols=258 Identities=21% Similarity=0.170 Sum_probs=132.0
Q ss_pred CEEEccCCcccccCCCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCc
Q 037786 229 RDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNS 308 (565)
Q Consensus 229 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~ 308 (565)
+.++.++..+...+... ++.+++|++++|.++...+.+|..+++|++|++++|.+... .+..+..++.|+.|++++|+
T Consensus 13 ~~~~C~~~~L~~lP~~l-~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i-~~~~f~~l~~L~~L~l~~n~ 90 (305)
T d1xkua_ 13 RVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFAPLVKLERLYLSKNQ 90 (305)
T ss_dssp TEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCCccCCCC-CCCCCEEECcCCcCCCcChhHhhcccccccccccccccccc-chhhhhCCCccCEecccCCc
Confidence 44444444444333322 24566666666666633334566666777777777666533 33456666677777777666
Q ss_pred cccccCCcccCCCCCccEEEcCCCCCCCCCchhhcc--ccceEeccCCcCccc--CChhhhhhCCCCccEEEcCCCccCC
Q 037786 309 LSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSL--ELAYLDLSENNIDGQ--IPNWMWEVGKDTLSFLDLSHNFITE 384 (565)
Q Consensus 309 i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~--~L~~L~l~~n~l~~~--~~~~~~~~~~~~L~~L~ls~n~l~~ 384 (565)
++.... ...+.+..|.+.+|.+..++...... ....++...|..... .+..+. .++.|+.+++++|.+..
T Consensus 91 l~~l~~----~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~--~l~~L~~l~l~~n~l~~ 164 (305)
T d1xkua_ 91 LKELPE----KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ--GMKKLSYIRIADTNITT 164 (305)
T ss_dssp CSBCCS----SCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGG--GCTTCCEEECCSSCCCS
T ss_pred cCcCcc----chhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccc--cccccCccccccCCccc
Confidence 653221 22345666666666666555433222 455555555543321 111111 34555556665555555
Q ss_pred ccCCCCCCCCeEEcCCCcccccCCC---CCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCC
Q 037786 385 MKQIPWKNLKYLKLQSNLLQGPLPV---PPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNF 461 (565)
Q Consensus 385 ~~~~~~~~L~~L~l~~n~~~~~~~~---~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 461 (565)
++...+++++.|++++|.+....+. .++.+++|++++|++++..+..+..+ ++|++|++++|+
T Consensus 165 l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l--------------~~L~~L~L~~N~ 230 (305)
T d1xkua_ 165 IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT--------------PHLRELHLNNNK 230 (305)
T ss_dssp CCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS--------------TTCCEEECCSSC
T ss_pred cCcccCCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccccccc--------------ccceeeeccccc
Confidence 5444445555555555544433222 13444444444444444444444443 444444444444
Q ss_pred CCCCcc--cCCCcccEEECCCCcccccCCCCCCCCcEeeccCceeeeccch------hhhcCCCCCEEeCCCCcCc
Q 037786 462 ITKMKQ--ISWKNLGYLDLRSNLLQGPLLVPPSSLRVILILNNQFTGEIIH------SICDIIALDVLDLSNNRLS 529 (565)
Q Consensus 462 l~~~~~--~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~------~l~~~~~L~~L~l~~n~~~ 529 (565)
++.+|. . .+++|+.|++++|+++..... .+...++|+.|+|++|++.
T Consensus 231 L~~lp~~l~---------------------~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~ 285 (305)
T d1xkua_ 231 LVKVPGGLA---------------------DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285 (305)
T ss_dssp CSSCCTTTT---------------------TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred ccccccccc---------------------cccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence 444422 3 345555555555555433222 2345677888888888775
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.89 E-value=3e-23 Score=197.69 Aligned_cols=247 Identities=26% Similarity=0.351 Sum_probs=171.5
Q ss_pred CccEEEccCCcccc--cCCccccCCCCCCEEecCCCCCCCccCCC-CCCCCCCcEEEccCCccCccCCccccCCCCCCEE
Q 037786 36 SLTSLSLSYCRIQG--EFPENIFRLSNLQMVRLKFNSNLSGVFPR-SNWTSPLRCLDVSGTRFSGQLPDSICNLRHLREL 112 (565)
Q Consensus 36 ~L~~L~l~~~~i~~--~~~~~~~~l~~L~~L~L~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 112 (565)
++++|+|+++.+.+ .+|..++++++|++|+|+++..+.+.+|. +..+++|++|++++|.+.+..+..+..++.|+++
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l 130 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence 57777777776664 35667777777777777653245544443 3344777777777777776667777777777777
Q ss_pred EcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCC-CEEEccCccccccCcC-CcCCCCCCEEeccCCcc
Q 037786 113 HLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQL-TDVDLGSNSFDGQFPD-IMNLTRISRLDISNNQL 190 (565)
Q Consensus 113 ~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L-~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~ 190 (565)
++++|.+....|..+.+++.++.+++++|.+.+.+|..+..+..+ +.+++++|++.+..+. +..+. ...+++..+..
T Consensus 131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~-~~~l~l~~~~~ 209 (313)
T d1ogqa_ 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence 777777777777777777777777777777777777777666654 6777777777655554 44333 34677777777
Q ss_pred cccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCC--CCCCCcEEEccCCccccCCchhh
Q 037786 191 TGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF--PSKSLRKLYLTNNRLHGSIPSSI 268 (565)
Q Consensus 191 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~ 268 (565)
.+..+..+..+++++.++++++.+.... ..+..+++++.|++++|++.+..+.. ..++|++|++++|++++.+|. +
T Consensus 210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~ 287 (313)
T d1ogqa_ 210 EGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-G 287 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBG-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-S
T ss_pred cccccccccccccccccccccccccccc-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-c
Confidence 6667777777777788887777776433 35666777788888888777544332 557788888888887776664 4
Q ss_pred hcCCCcCcccccccccc
Q 037786 269 FELANLTYLSLASNNFS 285 (565)
Q Consensus 269 ~~~~~L~~L~l~~n~~~ 285 (565)
.++++|+.+++++|+..
T Consensus 288 ~~L~~L~~l~l~~N~~l 304 (313)
T d1ogqa_ 288 GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp TTGGGSCGGGTCSSSEE
T ss_pred ccCCCCCHHHhCCCccc
Confidence 66788889999998743
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.89 E-value=4.1e-21 Score=182.08 Aligned_cols=241 Identities=21% Similarity=0.276 Sum_probs=170.5
Q ss_pred CCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCC-CCCCCCCCcEEE
Q 037786 11 KLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFP-RSNWTSPLRCLD 89 (565)
Q Consensus 11 ~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~~~~L~~L~ 89 (565)
..++++.++.+++.++. .+|+++++|++++|+|+...+.+|.++++|++|++++| ......+ .+..++.|++|+
T Consensus 11 ~~~~~~C~~~~L~~lP~----~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n-~~~~i~~~~f~~l~~L~~L~ 85 (305)
T d1xkua_ 11 HLRVVQCSDLGLEKVPK----DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLY 85 (305)
T ss_dssp ETTEEECTTSCCCSCCC----SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEE
T ss_pred cCCEEEecCCCCCccCC----CCCCCCCEEECcCCcCCCcChhHhhccccccccccccc-cccccchhhhhCCCccCEec
Confidence 45778888888876643 34688999999999998666668999999999999988 4444433 344558888888
Q ss_pred ccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCccc--ccCCcCccCCCCCCEEEccCccc
Q 037786 90 VSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFS--GHIPPSLSNLHQLTDVDLGSNSF 167 (565)
Q Consensus 90 l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~ 167 (565)
+++|+++ .+|.. ....++.|++..+.+....+..+.....+..++...+... ...+..+..+++|+.+++++|.+
T Consensus 86 l~~n~l~-~l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l 162 (305)
T d1xkua_ 86 LSKNQLK-ELPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 162 (305)
T ss_dssp CCSSCCS-BCCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred ccCCccC-cCccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCc
Confidence 8888887 44543 3457888888888887777777777777888887776433 33455677778888888888877
Q ss_pred cccCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCC-C
Q 037786 168 DGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF-P 246 (565)
Q Consensus 168 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~ 246 (565)
...... .+++|+.|++++|......+..+..++.++.|++++|.+....+.++..+++|++|++++|++...+..+ .
T Consensus 163 ~~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~ 240 (305)
T d1xkua_ 163 TTIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 240 (305)
T ss_dssp CSCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTT
T ss_pred cccCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccccccccccc
Confidence 644333 2567778888877777666677777777788888777777666667777777777777777666443322 3
Q ss_pred CCCCcEEEccCCccc
Q 037786 247 SKSLRKLYLTNNRLH 261 (565)
Q Consensus 247 ~~~L~~L~l~~~~~~ 261 (565)
.++|+.|++++|+++
T Consensus 241 l~~L~~L~Ls~N~i~ 255 (305)
T d1xkua_ 241 HKYIQVVYLHNNNIS 255 (305)
T ss_dssp CSSCCEEECCSSCCC
T ss_pred ccCCCEEECCCCccC
Confidence 455555555555554
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=9e-22 Score=184.41 Aligned_cols=223 Identities=21% Similarity=0.221 Sum_probs=189.6
Q ss_pred cEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCC-CCCCCCcEEEcc
Q 037786 13 QLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRS-NWTSPLRCLDVS 91 (565)
Q Consensus 13 ~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~-~~~~~L~~L~l~ 91 (565)
..++.++.+++.++. .+|+.+++|+|++|.|+...+.+|.++++|++|+++++ .+....... .....+++++..
T Consensus 14 ~~v~c~~~~L~~iP~----~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n-~l~~i~~~~~~~~~~~~~l~~~ 88 (284)
T d1ozna_ 14 VTTSCPQQGLQAVPV----GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLS 88 (284)
T ss_dssp CEEECCSSCCSSCCT----TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred eEEEcCCCCCCccCC----CCCCCCCEEECcCCcCCCCCHHHhhccccccccccccc-cccccccccccccccccccccc
Confidence 356777777775532 35678999999999999777788999999999999998 454444433 334888888775
Q ss_pred -CCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCcccccc
Q 037786 92 -GTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQ 170 (565)
Q Consensus 92 -~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 170 (565)
.+.++...+..|.++++|++|++++|.+....+..+....+|+.+++++|.++...+.+|..+++|+.|++++|.+...
T Consensus 89 ~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l 168 (284)
T d1ozna_ 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (284)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred cccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCccccc
Confidence 4566666688899999999999999998877778888999999999999999977778899999999999999999877
Q ss_pred CcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccc
Q 037786 171 FPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTG 240 (565)
Q Consensus 171 ~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 240 (565)
.+. +..+++|+.+++++|++++..+..|..+++|++|++++|.+....+..|..+++|+.|++++|++..
T Consensus 169 ~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C 239 (284)
T d1ozna_ 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (284)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred chhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence 665 8889999999999999998889999999999999999999998888899999999999999998874
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=4.6e-22 Score=184.27 Aligned_cols=205 Identities=21% Similarity=0.182 Sum_probs=169.1
Q ss_pred CCCCccEEEcCCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCC-CCCCCCeEEc
Q 037786 320 SFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI-PWKNLKYLKL 398 (565)
Q Consensus 320 ~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~l 398 (565)
....+.+++.++++++++|..+. .++++|++++|.++ .++...+. .+++|++|++++|+++.++.. .+++|++|++
T Consensus 8 ~~~~~~~v~C~~~~L~~iP~~lp-~~l~~L~Ls~N~i~-~l~~~~f~-~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~L 84 (266)
T d1p9ag_ 8 KVASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLY-TFSLATLM-PYTRLTQLNLDRAELTKLQVDGTLPVLGTLDL 84 (266)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCS-EEEGGGGT-TCTTCCEEECTTSCCCEEECCSCCTTCCEEEC
T ss_pred ccCCCeEEEccCCCCCeeCcCcC-cCCCEEECcCCcCC-CcCHHHhh-cccccccccccccccccccccccccccccccc
Confidence 44566778899999998886543 37999999999998 45544333 678999999999999988764 7899999999
Q ss_pred CCCcccccCCC--CCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcc---cCCCcc
Q 037786 399 QSNLLQGPLPV--PPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQ---ISWKNL 473 (565)
Q Consensus 399 ~~n~~~~~~~~--~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~L 473 (565)
++|++....+. .+++|++|++++|.+....+..+... +++++|++++|.+..++. ..++++
T Consensus 85 s~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l--------------~~l~~L~l~~n~l~~l~~~~~~~l~~l 150 (266)
T d1p9ag_ 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL--------------GELQELYLKGNELKTLPPGLLTPTPKL 150 (266)
T ss_dssp CSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTC--------------TTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred ccccccccccccccccccccccccccccceeeccccccc--------------cccccccccccccceeccccccccccc
Confidence 99998864433 38999999999999987777666666 899999999999999943 667899
Q ss_pred cEEECCCCcccccCCC---CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCCCCCCCCCcccccCCC
Q 037786 474 GYLDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSPWCQTKWPSR 550 (565)
Q Consensus 474 ~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~l~~~~~ 550 (565)
+.+++++|++++..+. .+++|++|++++|+++ .+|+.+..+++|+.|+|++|++.|. |.+.|...
T Consensus 151 ~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~Cd-----------C~~~~l~~ 218 (266)
T d1p9ag_ 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN-----------CEILYFRR 218 (266)
T ss_dssp CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS-----------GGGHHHHH
T ss_pred hhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCC-----------cchHHHHH
Confidence 9999999999874443 7899999999999999 6788888999999999999999987 66666666
Q ss_pred Ccc
Q 037786 551 WSA 553 (565)
Q Consensus 551 ~~~ 553 (565)
|++
T Consensus 219 wl~ 221 (266)
T d1p9ag_ 219 WLQ 221 (266)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=5.8e-20 Score=171.95 Aligned_cols=207 Identities=21% Similarity=0.186 Sum_probs=183.8
Q ss_pred CCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCC-CCCCCCCcEE
Q 037786 10 TKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPR-SNWTSPLRCL 88 (565)
Q Consensus 10 ~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~-~~~~~~L~~L 88 (565)
+.+++|+|++|.++.+.+.+|.++ ++|++|+++++.++...+..+..+..++.+....+.......+. +..+++|++|
T Consensus 32 ~~~~~L~Ls~N~i~~i~~~~f~~l-~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L 110 (284)
T d1ozna_ 32 AASQRIFLHGNRISHVPAASFRAC-RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (284)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEECcCCcCCCCCHHHhhcc-ccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEE
Confidence 468999999999999988899998 89999999999999888889999999999988766444444333 3444999999
Q ss_pred EccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCcccc
Q 037786 89 DVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFD 168 (565)
Q Consensus 89 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 168 (565)
++++|.+....+..+..+++|+.+++++|.++...+.+|..+++|+.|++++|.+....+.+|.++++|+.+++++|.+.
T Consensus 111 ~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~ 190 (284)
T d1ozna_ 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (284)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccc
Confidence 99999988667777888999999999999999888889999999999999999999888889999999999999999998
Q ss_pred ccCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcccccccCC
Q 037786 169 GQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGT 217 (565)
Q Consensus 169 ~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 217 (565)
...+. +..+++|+.|++++|.+.+..+..|..+++|++|++++|++...
T Consensus 191 ~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~ 240 (284)
T d1ozna_ 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (284)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred ccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCC
Confidence 87665 89999999999999999988888899999999999999988744
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=1.2e-19 Score=167.71 Aligned_cols=200 Identities=20% Similarity=0.175 Sum_probs=141.9
Q ss_pred CCCCCcEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcE
Q 037786 8 NVTKLQLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRC 87 (565)
Q Consensus 8 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~ 87 (565)
+...+.+++.++++++.++. ++|+++++|+|++|+|+...+.+|.++++|++|++++| .+.. ++.+..+++|++
T Consensus 8 ~~~~~~~v~C~~~~L~~iP~----~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N-~l~~-l~~~~~l~~L~~ 81 (266)
T d1p9ag_ 8 KVASHLEVNCDKRNLTALPP----DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTK-LQVDGTLPVLGT 81 (266)
T ss_dssp CSTTCCEEECTTSCCSSCCS----CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCE-EECCSCCTTCCE
T ss_pred ccCCCeEEEccCCCCCeeCc----CcCcCCCEEECcCCcCCCcCHHHhhccccccccccccc-cccc-cccccccccccc
Confidence 45667788999998886642 35678999999999999777788999999999999998 4443 334445577777
Q ss_pred EEccCCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccc
Q 037786 88 LDVSGTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSF 167 (565)
Q Consensus 88 L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 167 (565)
|++++|.++ ..+..+..+++|+.|+++++.+....+..+..+.+++.|++.+|.+....+..+..+++++.+++++|++
T Consensus 82 L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l 160 (266)
T d1p9ag_ 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (266)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred ccccccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccc
Confidence 777777776 3455667777777777777777666666667777777777777777655555666677777777777776
Q ss_pred cccCcC-CcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEccccccc
Q 037786 168 DGQFPD-IMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLYNNTLS 215 (565)
Q Consensus 168 ~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 215 (565)
....+. +..+++|+.|++++|+++ .+|..+..+++|+.|++++|++.
T Consensus 161 ~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 161 TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence 655544 566666666666666666 45555555666666666666554
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.82 E-value=6.8e-18 Score=163.29 Aligned_cols=252 Identities=21% Similarity=0.266 Sum_probs=147.8
Q ss_pred CCcEEEccCCccccCCchhhhcCCCcCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEE
Q 037786 249 SLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILS 328 (565)
Q Consensus 249 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~ 328 (565)
.|++|++++|.+. .++. +..+++|+.++++++.+.... .....+..+.+..+..... .. ...++.++.+.
T Consensus 99 ~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~~~-----~~~~~l~~l~~~~~~~~~~--~~-l~~l~~l~~L~ 168 (353)
T d1jl5a_ 99 LLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLKKLP-----DLPPSLEFIAAGNNQLEEL--PE-LQNLPFLTAIY 168 (353)
T ss_dssp TCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSSC--CC-CTTCTTCCEEE
T ss_pred ccccccccccccc-cccc-hhhhccceeeccccccccccc-----cccccccchhhcccccccc--cc-ccccccceecc
Confidence 3555555555554 2332 334555555555555554221 1234445555554433211 11 14455666666
Q ss_pred cCCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCCCCCCCCeEEcCCCcccccCC
Q 037786 329 LSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLP 408 (565)
Q Consensus 329 l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~ 408 (565)
+.+|....++.... ..+.+...++.+. .++... .++.++.+++++|.....+. ...++..+.+.++.+.. .+
T Consensus 169 l~~n~~~~~~~~~~--~~~~l~~~~~~~~-~~~~~~---~l~~L~~l~l~~n~~~~~~~-~~~~l~~~~~~~~~~~~-~~ 240 (353)
T d1jl5a_ 169 ADNNSLKKLPDLPL--SLESIVAGNNILE-ELPELQ---NLPFLTTIYADNNLLKTLPD-LPPSLEALNVRDNYLTD-LP 240 (353)
T ss_dssp CCSSCCSSCCCCCT--TCCEEECCSSCCS-SCCCCT---TCTTCCEEECCSSCCSSCCS-CCTTCCEEECCSSCCSC-CC
T ss_pred cccccccccccccc--ccccccccccccc-cccccc---cccccccccccccccccccc-ccccccccccccccccc-cc
Confidence 66666554433221 2344444444443 333221 45677777777776665542 34567777777777653 34
Q ss_pred CCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcccCCCcccEEECCCCcccccCC
Q 037786 409 VPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLL 488 (565)
Q Consensus 409 ~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~ls~n~l~~~~~ 488 (565)
..++.+...++..+.+.+.. .. + ......++..+.+..++. .+++|++|++++|+++. +|
T Consensus 241 ~~~~~l~~~~~~~~~~~~l~-----~l-----~--------~~~~~~~~~~~~~~~~~~-~~~~L~~L~Ls~N~l~~-lp 300 (353)
T d1jl5a_ 241 ELPQSLTFLDVSENIFSGLS-----EL-----P--------PNLYYLNASSNEIRSLCD-LPPSLEELNVSNNKLIE-LP 300 (353)
T ss_dssp CCCTTCCEEECCSSCCSEES-----CC-----C--------TTCCEEECCSSCCSEECC-CCTTCCEEECCSSCCSC-CC
T ss_pred cccccccccccccccccccc-----cc-----c--------chhcccccccCccccccc-cCCCCCEEECCCCccCc-cc
Confidence 45667777777776554211 00 1 455567777777766643 46788899999888875 66
Q ss_pred CCCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCCCCCCCCCc
Q 037786 489 VPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSPWC 543 (565)
Q Consensus 489 ~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~ 543 (565)
..+++|+.|++++|+++. +|+ .+++|++|++++|+++ .+|+.+..+..|+
T Consensus 301 ~~~~~L~~L~L~~N~L~~-l~~---~~~~L~~L~L~~N~L~-~lp~~~~~L~~L~ 350 (353)
T d1jl5a_ 301 ALPPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLR-EFPDIPESVEDLR 350 (353)
T ss_dssp CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCCCTTCCEEE
T ss_pred cccCCCCEEECCCCcCCc-ccc---ccCCCCEEECcCCcCC-CCCccccccCeeE
Confidence 677889999999998874 453 3568999999999977 7887766665554
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.81 E-value=3.6e-17 Score=158.05 Aligned_cols=315 Identities=22% Similarity=0.249 Sum_probs=170.8
Q ss_pred CCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcCCcCCCCCCEEeccCCcccccCCCCCcCCCCCCEEEcc
Q 037786 131 TQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLTRISRLDISNNQLTGSIPSHGSGLQNLAVLRLY 210 (565)
Q Consensus 131 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 210 (565)
.++++|+++++.++ .+|+. .++|++|++++|.+..++.. +.+|+.|++.+|+++.. +. + .+.|++|+++
T Consensus 38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~l-~~-l--p~~L~~L~L~ 106 (353)
T d1jl5a_ 38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKAL-SD-L--PPLLEYLGVS 106 (353)
T ss_dssp HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCC-CS-C--CTTCCEEECC
T ss_pred cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCcccccc---hhhhhhhhhhhcccchh-hh-h--cccccccccc
Confidence 46889999999887 46653 46788999999888755432 45788888888877632 22 1 2468888888
Q ss_pred cccccCCCchhhcCCCCCCEEEccCCcccccCCCCCCCCCcEEEccCCccccCCchhhhcCCCcCccccccccccCccCh
Q 037786 211 NNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAFPSKSLRKLYLTNNRLHGSIPSSIFELANLTYLSLASNNFSGIVEP 290 (565)
Q Consensus 211 ~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 290 (565)
+|.+.. .+. +..+++|+.++++++.+..... ....+..+.+..+.... ...+..++.++.+.+.+|......
T Consensus 107 ~n~l~~-lp~-~~~l~~L~~L~l~~~~~~~~~~--~~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~~~~~~-- 178 (353)
T d1jl5a_ 107 NNQLEK-LPE-LQNSSFLKIIDVDNNSLKKLPD--LPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSLKKLP-- 178 (353)
T ss_dssp SSCCSS-CCC-CTTCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCCSSCC--
T ss_pred cccccc-ccc-hhhhccceeecccccccccccc--ccccccchhhccccccc--cccccccccceecccccccccccc--
Confidence 888763 332 4667788888887777654332 22345555555444331 122334445555555554443221
Q ss_pred HhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhCCC
Q 037786 291 YMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKD 370 (565)
Q Consensus 291 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 370 (565)
......+.+ ...++.+..++.......++.+++++|... .++. ...
T Consensus 179 ---~~~~~~~~l-------------------------~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~-~~~~-----~~~ 224 (353)
T d1jl5a_ 179 ---DLPLSLESI-------------------------VAGNNILEELPELQNLPFLTTIYADNNLLK-TLPD-----LPP 224 (353)
T ss_dssp ---CCCTTCCEE-------------------------ECCSSCCSSCCCCTTCTTCCEEECCSSCCS-SCCS-----CCT
T ss_pred ---ccccccccc-------------------------cccccccccccccccccccccccccccccc-cccc-----ccc
Confidence 111122333 333333333333333334445555444433 2221 123
Q ss_pred CccEEEcCCCccCCccCCCCCCCCeEEcCCCcccccCCCCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCC
Q 037786 371 TLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKD 450 (565)
Q Consensus 371 ~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~ 450 (565)
.+..+.+.++.+..... ..+.+...++..+.+.+ ....+......++..+.+.+.. ..+ +
T Consensus 225 ~l~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~-l~~l~~~~~~~~~~~~~~~~~~----~~~--------------~ 284 (353)
T d1jl5a_ 225 SLEALNVRDNYLTDLPE-LPQSLTFLDVSENIFSG-LSELPPNLYYLNASSNEIRSLC----DLP--------------P 284 (353)
T ss_dssp TCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSE-ESCCCTTCCEEECCSSCCSEEC----CCC--------------T
T ss_pred ccccccccccccccccc-ccccccccccccccccc-cccccchhcccccccCcccccc----ccC--------------C
Confidence 44455555554443322 22344445544444332 1222344455555555554211 011 6
Q ss_pred CCcEEeCcCCCCCCCcccCCCcccEEECCCCcccccCCCCCCCCcEeeccCceeeeccchhhhcCCCCCEEeCC
Q 037786 451 SLSYLNLSHNFITKMKQISWKNLGYLDLRSNLLQGPLLVPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLS 524 (565)
Q Consensus 451 ~L~~L~l~~n~l~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 524 (565)
+|++|++++|++..+|. .+++|+.|++++|+++. ++..+++|++|++++|+++ .+|. ...+|+.|.+.
T Consensus 285 ~L~~L~Ls~N~l~~lp~-~~~~L~~L~L~~N~L~~-l~~~~~~L~~L~L~~N~L~-~lp~---~~~~L~~L~~~ 352 (353)
T d1jl5a_ 285 SLEELNVSNNKLIELPA-LPPRLERLIASFNHLAE-VPELPQNLKQLHVEYNPLR-EFPD---IPESVEDLRMN 352 (353)
T ss_dssp TCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCS-SCCC---CCTTCCEEECC
T ss_pred CCCEEECCCCccCcccc-ccCCCCEEECCCCcCCc-cccccCCCCEEECcCCcCC-CCCc---cccccCeeECc
Confidence 67777777777776653 35677777777777764 5556667777777777776 3443 23456666654
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=1e-19 Score=183.02 Aligned_cols=108 Identities=18% Similarity=0.265 Sum_probs=60.2
Q ss_pred CCcEEEccCCccCccC-CccccCCCCCCEEEcccccCcccC----chhccCCCCCCeeeccCCccccc----CCcCcc-C
Q 037786 84 PLRCLDVSGTRFSGQL-PDSICNLRHLRELHLSQCNFYGFL----PASLGNVTQLAVLSLSFKSFSGH----IPPSLS-N 153 (565)
Q Consensus 84 ~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~-~ 153 (565)
.|+.||++++++++.. ...+..++++++|+|++|.++... +.++..+++|+.|++++|.++.. +...+. .
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~ 82 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence 4677777777776422 223445677777777777765432 33455667777777777766521 122222 1
Q ss_pred CCCCCEEEccCccccccC-----cCCcCCCCCCEEeccCCccc
Q 037786 154 LHQLTDVDLGSNSFDGQF-----PDIMNLTRISRLDISNNQLT 191 (565)
Q Consensus 154 l~~L~~L~l~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~ 191 (565)
..+|++|++++|.++... ..+..+++|++|++++|.+.
T Consensus 83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~ 125 (460)
T d1z7xw1 83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 125 (460)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred CCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence 245666666666654321 11445556666666665544
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=1.5e-19 Score=181.71 Aligned_cols=107 Identities=21% Similarity=0.160 Sum_probs=61.3
Q ss_pred CCCEEEccCccccccC--cCCcCCCCCCEEeccCCccccc----CCCCCcCCCCCCEEEcccccccCCCchh----hc-C
Q 037786 156 QLTDVDLGSNSFDGQF--PDIMNLTRISRLDISNNQLTGS----IPSHGSGLQNLAVLRLYNNTLSGTIPSW----LF-T 224 (565)
Q Consensus 156 ~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~----l~-~ 224 (565)
+|++|+++++++.+.. .-+..+++++.|++++|.++.. +...+..+++|++|++++|.++...... +. .
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~ 82 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence 4677777777775422 1255667777777777766532 2233456677777777777664221111 11 2
Q ss_pred CCCCCEEEccCCcccccCC------CCCCCCCcEEEccCCcccc
Q 037786 225 LPLLRDIDLSDNQLTGHLD------AFPSKSLRKLYLTNNRLHG 262 (565)
Q Consensus 225 ~~~L~~L~l~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~ 262 (565)
..+|++|++++|.+.+... ....++|++|++++|.+.+
T Consensus 83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~ 126 (460)
T d1z7xw1 83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 126 (460)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred CCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence 2457777777776653221 1144566777777666653
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.73 E-value=1.4e-17 Score=147.47 Aligned_cols=176 Identities=19% Similarity=0.238 Sum_probs=128.8
Q ss_pred eccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCC-CCCCCCeEEcCCCcccccCCC-CCCCCcEEEccccccCcc
Q 037786 350 DLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI-PWKNLKYLKLQSNLLQGPLPV-PPPRLQFLLASNNQFTGE 427 (565)
Q Consensus 350 ~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~l~~n~~~~~~~~-~~~~L~~L~l~~n~i~~~ 427 (565)
.+..+.+++.++..- +.+++.|++++|.++.+... .+++|++|++++|++.+..+. .+++|++|++++|++++.
T Consensus 30 ~l~~~~~~~~~~~~~----L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l 105 (210)
T d1h6ta2 30 NLKKKSVTDAVTQNE----LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDL 105 (210)
T ss_dssp HTTCSCTTSEECHHH----HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCG
T ss_pred HhCcCccCCccCHHH----hcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCccccccCcccccccccccccccc
Confidence 445555554444322 24677777777777777653 677888888888877764433 378888888888888752
Q ss_pred chhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCc-ccCCCcccEEECCCCcccccCCC-CCCCCcEeeccCceee
Q 037786 428 IIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMK-QISWKNLGYLDLRSNLLQGPLLV-PPSSLRVILILNNQFT 505 (565)
Q Consensus 428 ~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~l~~n~~~ 505 (565)
..++.+ ++|+.|++++|.+..++ ...++.++.+++++|.+++.... .+++|+++++++|.++
T Consensus 106 --~~l~~l--------------~~L~~L~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~ 169 (210)
T d1h6ta2 106 --SSLKDL--------------KKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS 169 (210)
T ss_dssp --GGGTTC--------------TTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC
T ss_pred --cccccc--------------cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 245656 88888999888888774 47778888999998888763322 7788999999999887
Q ss_pred eccchhhhcCCCCCEEeCCCCcCcccCCCCCCCCCCCcccccCC
Q 037786 506 GEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSPWCQTKWPS 549 (565)
Q Consensus 506 ~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~l~~~~ 549 (565)
+.. .++++++|++|++++|+++ .+| .++.+++|+.|++++
T Consensus 170 ~i~--~l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 170 DIV--PLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp CCG--GGTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred ccc--cccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEccC
Confidence 543 3788999999999999887 555 588899999888754
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.71 E-value=6.7e-17 Score=145.32 Aligned_cols=201 Identities=18% Similarity=0.212 Sum_probs=90.1
Q ss_pred cCccccccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCchhhccccceEeccC
Q 037786 274 LTYLSLASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSLELAYLDLSE 353 (565)
Q Consensus 274 L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~ 353 (565)
+..++++.+++.+.. ..+.+.+|+.|++.+|.++.. ..+ ..+++|++|++++|.++.++.+..
T Consensus 21 ~~~~~l~~~~~~d~~---~~~~l~~L~~L~l~~~~i~~l--~~l-~~l~~L~~L~ls~n~i~~~~~l~~----------- 83 (227)
T d1h6ua2 21 AIKIAAGKSNVTDTV---TQADLDGITTLSAFGTGVTTI--EGV-QYLNNLIGLELKDNQITDLAPLKN----------- 83 (227)
T ss_dssp HHHHHTTCSSTTSEE---CHHHHHTCCEEECTTSCCCCC--TTG-GGCTTCCEEECCSSCCCCCGGGTT-----------
T ss_pred HHHHHhCCCCcCCcC---CHHHcCCcCEEECCCCCCCcc--hhH-hcCCCCcEeecCCceeeccccccc-----------
Confidence 344555555555442 234455666666666665432 222 445555555555555554433222
Q ss_pred CcCcccCChhhhhhCCCCccEEEcCCCccCCccC-CCCCCCCeEEcCCCcccccCC-CCCCCCcEEEccccccCccchhh
Q 037786 354 NNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQ-IPWKNLKYLKLQSNLLQGPLP-VPPPRLQFLLASNNQFTGEIIQS 431 (565)
Q Consensus 354 n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~L~~L~l~~n~~~~~~~-~~~~~L~~L~l~~n~i~~~~~~~ 431 (565)
++.++.+++++|.+++++. ..+++|+.++++++...+..+ ...+.++.+.++++.+.... .
T Consensus 84 ---------------l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~ 146 (227)
T d1h6ua2 84 ---------------LTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS--P 146 (227)
T ss_dssp ---------------CCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCG--G
T ss_pred ---------------cccccccccccccccccccccccccccccccccccccccchhccccchhhhhchhhhhchhh--h
Confidence 3444444444444443332 234444444444444332211 12344444444444443211 1
Q ss_pred hhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cccCCCcccEEECCCCcccccCC-CCCCCCcEeeccCceeeeccc
Q 037786 432 ICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQISWKNLGYLDLRSNLLQGPLL-VPPSSLRVILILNNQFTGEII 509 (565)
Q Consensus 432 l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~L~~L~ls~n~l~~~~~-~~~~~L~~L~l~~n~~~~~~~ 509 (565)
+... ++|++|++++|.+... +...+++|+.|++++|++++..+ ..+++|++|++++|++++..
T Consensus 147 ~~~~--------------~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~l~~l~~L~~L~Ls~N~lt~i~- 211 (227)
T d1h6ua2 147 LAGL--------------TNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVS- 211 (227)
T ss_dssp GGGC--------------TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCG-
T ss_pred hccc--------------cccccccccccccccchhhcccccceecccCCCccCCChhhcCCCCCCEEECcCCcCCCCc-
Confidence 2222 4555555555555544 22444555555555555443111 13344444444444444322
Q ss_pred hhhhcCCCCCEEeCC
Q 037786 510 HSICDIIALDVLDLS 524 (565)
Q Consensus 510 ~~l~~~~~L~~L~l~ 524 (565)
.++++++|++|+|+
T Consensus 212 -~l~~l~~L~~L~ls 225 (227)
T d1h6ua2 212 -PLANTSNLFIVTLT 225 (227)
T ss_dssp -GGTTCTTCCEEEEE
T ss_pred -ccccCCCCCEEEee
Confidence 14444444444443
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.71 E-value=8.8e-17 Score=144.53 Aligned_cols=198 Identities=18% Similarity=0.163 Sum_probs=155.7
Q ss_pred EEcCCCCCCCCCchhhccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccC-CCCCCCCeEEcCCCcccc
Q 037786 327 LSLSACNISAFPSFLRSLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQ-IPWKNLKYLKLQSNLLQG 405 (565)
Q Consensus 327 L~l~~~~l~~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~L~~L~l~~n~~~~ 405 (565)
+++..++++.+.......+|+.|++.+|.++ .++ .+. .+++|++|++++|.++.+.+ ..+++++.+++++|.++.
T Consensus 24 ~~l~~~~~~d~~~~~~l~~L~~L~l~~~~i~-~l~-~l~--~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~ 99 (227)
T d1h6ua2 24 IAAGKSNVTDTVTQADLDGITTLSAFGTGVT-TIE-GVQ--YLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN 99 (227)
T ss_dssp HHTTCSSTTSEECHHHHHTCCEEECTTSCCC-CCT-TGG--GCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC
T ss_pred HHhCCCCcCCcCCHHHcCCcCEEECCCCCCC-cch-hHh--cCCCCcEeecCCceeeccccccccccccccccccccccc
Confidence 4455555555443333347888888888887 443 233 57899999999999998876 488999999999998875
Q ss_pred cC-CCCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cccCCCcccEEECCCCcc
Q 037786 406 PL-PVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQISWKNLGYLDLRSNLL 483 (565)
Q Consensus 406 ~~-~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~L~~L~ls~n~l 483 (565)
.. ...+++|+++++++|...+.. .+... +.++.+.++++.+... +...+++|+.|++++|.+
T Consensus 100 i~~l~~l~~L~~l~l~~~~~~~~~--~~~~~--------------~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 163 (227)
T d1h6ua2 100 VSAIAGLQSIKTLDLTSTQITDVT--PLAGL--------------SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQV 163 (227)
T ss_dssp CGGGTTCTTCCEEECTTSCCCCCG--GGTTC--------------TTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred cccccccccccccccccccccccc--hhccc--------------cchhhhhchhhhhchhhhhcccccccccccccccc
Confidence 43 235899999999999887532 23444 8999999999999888 557889999999999998
Q ss_pred cccCC-CCCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCCCCCCCCCcccccC
Q 037786 484 QGPLL-VPPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSPWCQTKWP 548 (565)
Q Consensus 484 ~~~~~-~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~l~~~ 548 (565)
.+..+ ..+++|++|++++|.+++.. .++++++|++|+|++|+++ .+| .++++++|+.|++.
T Consensus 164 ~~~~~l~~l~~L~~L~Ls~n~l~~l~--~l~~l~~L~~L~Ls~N~lt-~i~-~l~~l~~L~~L~ls 225 (227)
T d1h6ua2 164 SDLTPLANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQIS-DVS-PLANTSNLFIVTLT 225 (227)
T ss_dssp CCCGGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCC-BCG-GGTTCTTCCEEEEE
T ss_pred ccchhhcccccceecccCCCccCCCh--hhcCCCCCCEEECcCCcCC-CCc-ccccCCCCCEEEee
Confidence 76333 48899999999999998643 3899999999999999988 555 38899999999875
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.70 E-value=1e-16 Score=140.68 Aligned_cols=173 Identities=23% Similarity=0.281 Sum_probs=125.2
Q ss_pred EeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCC-CCCCCCeEEcCCCcccccCC-CCCCCCcEEEccccccCc
Q 037786 349 LDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI-PWKNLKYLKLQSNLLQGPLP-VPPPRLQFLLASNNQFTG 426 (565)
Q Consensus 349 L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~l~~n~~~~~~~-~~~~~L~~L~l~~n~i~~ 426 (565)
..++.+.+++..... .+++++.|++++|.++++... .+++|++|++++|++++..+ ..+++|++|++++|.+..
T Consensus 23 ~~l~~~~~~~~~~~~----~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~ 98 (199)
T d2omxa2 23 TVLGKTNVTDTVSQT----DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 98 (199)
T ss_dssp HHTTCSSTTSEECHH----HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred HHhCCCCCCCccCHH----HhcCCCEEECCCCCCCCccccccCCCcCcCccccccccCcccccCCccccccccccccccc
Confidence 345555555443332 236777788888777776653 67788888888887776443 237888888888887764
Q ss_pred cchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cccCCCcccEEECCCCcccccC-CCCCCCCcEeeccCcee
Q 037786 427 EIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQISWKNLGYLDLRSNLLQGPL-LVPPSSLRVILILNNQF 504 (565)
Q Consensus 427 ~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~L~~L~ls~n~l~~~~-~~~~~~L~~L~l~~n~~ 504 (565)
.. .+..+ +.|++|++++|.+... +...+++|+.|++++|.+.... ...+++|++|++++|.+
T Consensus 99 ~~--~l~~l--------------~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l 162 (199)
T d2omxa2 99 IT--PLANL--------------TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQV 162 (199)
T ss_dssp CG--GGTTC--------------TTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCC
T ss_pred cc--ccccc--------------cccccccccccccccccccchhhhhHHhhhhhhhhcccccccccccccccccccccc
Confidence 32 35555 8888999998888887 4577888999999999876522 23788999999999998
Q ss_pred eeccchhhhcCCCCCEEeCCCCcCcccCCCCCCCCCCCccc
Q 037786 505 TGEIIHSICDIIALDVLDLSNNRLSGTIPKCIGNFSPWCQT 545 (565)
Q Consensus 505 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~l~~l~~L~~l 545 (565)
++.. .++++++|++|++++|+++ .+| .++.+++|+.|
T Consensus 163 ~~l~--~l~~l~~L~~L~ls~N~i~-~i~-~l~~L~~L~~L 199 (199)
T d2omxa2 163 TDLK--PLANLTTLERLDISSNKVS-DIS-VLAKLTNLESL 199 (199)
T ss_dssp CCCG--GGTTCTTCCEEECCSSCCC-CCG-GGGGCTTCSEE
T ss_pred cCCc--cccCCCCCCEEECCCCCCC-CCc-cccCCCCCCcC
Confidence 7543 4889999999999999887 444 57778877764
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.65 E-value=9.2e-16 Score=135.62 Aligned_cols=159 Identities=21% Similarity=0.259 Sum_probs=103.0
Q ss_pred ccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCC-CCCCCCeEEcCCCcccccC-CCCCCCCcEEEcccc
Q 037786 345 ELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQI-PWKNLKYLKLQSNLLQGPL-PVPPPRLQFLLASNN 422 (565)
Q Consensus 345 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~n 422 (565)
++++|++++|.+++ ++. +. .+++|++|++++|+++++++. .+++|+.|++++|++++.. ...+++|+.+++++|
T Consensus 47 ~L~~L~l~~~~i~~-l~~-l~--~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~ 122 (210)
T d1h6ta2 47 SIDQIIANNSDIKS-VQG-IQ--YLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHN 122 (210)
T ss_dssp TCCEEECTTSCCCC-CTT-GG--GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTS
T ss_pred CccEEECcCCCCCC-chh-Hh--hCCCCCEEeCCCccccCccccccCccccccccccccccccccccccccccccccccc
Confidence 44555555555442 221 11 345566666666666555542 4556666666666665432 223667777777777
Q ss_pred ccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cccCCCcccEEECCCCcccccCC-CCCCCCcEeecc
Q 037786 423 QFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQISWKNLGYLDLRSNLLQGPLL-VPPSSLRVILIL 500 (565)
Q Consensus 423 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~L~~L~ls~n~l~~~~~-~~~~~L~~L~l~ 500 (565)
.+.. ...+..+ +.++.+++++|.+++. +...+++|+.+++++|.+++..+ ..+++|++|+++
T Consensus 123 ~~~~--~~~l~~l--------------~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls 186 (210)
T d1h6ta2 123 GISD--INGLVHL--------------PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLS 186 (210)
T ss_dssp CCCC--CGGGGGC--------------TTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred cccc--ccccccc--------------ccccccccccccccccccccccccccccccccccccccccccCCCCCCEEECC
Confidence 6653 2345555 7888888888888877 34677888888888888876332 277888999999
Q ss_pred CceeeeccchhhhcCCCCCEEeCCC
Q 037786 501 NNQFTGEIIHSICDIIALDVLDLSN 525 (565)
Q Consensus 501 ~n~~~~~~~~~l~~~~~L~~L~l~~ 525 (565)
+|.+++ ++ .|+.+++|++|+|++
T Consensus 187 ~N~i~~-l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 187 KNHISD-LR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp SSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred CCCCCC-Ch-hhcCCCCCCEEEccC
Confidence 998875 33 588999999999864
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.63 E-value=2.8e-15 Score=131.24 Aligned_cols=135 Identities=21% Similarity=0.241 Sum_probs=81.4
Q ss_pred CCCccEEEcCCCccCCccCC-CCCCCCeEEcCCCcccccC-CCCCCCCcEEEccccccCccchhhhhhcCCCCCCccccc
Q 037786 369 KDTLSFLDLSHNFITEMKQI-PWKNLKYLKLQSNLLQGPL-PVPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISE 446 (565)
Q Consensus 369 ~~~L~~L~ls~n~l~~~~~~-~~~~L~~L~l~~n~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~ 446 (565)
+++|++|++++|+++++++. .+++|++|++++|.+.... ...++.|+++++++|.+... ..+..+
T Consensus 61 l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~l----------- 127 (199)
T d2omxa2 61 LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDI--DPLKNL----------- 127 (199)
T ss_dssp CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCC--GGGTTC-----------
T ss_pred CCCcCcCccccccccCcccccCCcccccccccccccccccccccccccccccccccccccc--cccchh-----------
Confidence 34455555555555444432 4455555555555544322 12356666666666655532 224444
Q ss_pred cCCCCCcEEeCcCCCCCCCc-ccCCCcccEEECCCCcccccC-CCCCCCCcEeeccCceeeeccchhhhcCCCCCEE
Q 037786 447 IGKDSLSYLNLSHNFITKMK-QISWKNLGYLDLRSNLLQGPL-LVPPSSLRVILILNNQFTGEIIHSICDIIALDVL 521 (565)
Q Consensus 447 ~~~~~L~~L~l~~n~l~~~~-~~~~~~L~~L~ls~n~l~~~~-~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L 521 (565)
++|+.|++++|++..++ ...+++++.|++++|++++.. ...+++|++|++++|++++. ..++.+++|++|
T Consensus 128 ---~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N~i~~i--~~l~~L~~L~~L 199 (199)
T d2omxa2 128 ---TNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESL 199 (199)
T ss_dssp ---TTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred ---hhhHHhhhhhhhhcccccccccccccccccccccccCCccccCCCCCCEEECCCCCCCCC--ccccCCCCCCcC
Confidence 67777777777777664 366777777777777776532 23678888888888888753 247888888876
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=1.5e-15 Score=137.91 Aligned_cols=214 Identities=13% Similarity=0.096 Sum_probs=123.9
Q ss_pred cEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCccCC--CCCCCCCCcEEEc
Q 037786 13 QLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSGVFP--RSNWTSPLRCLDV 90 (565)
Q Consensus 13 ~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~--~~~~~~~L~~L~l 90 (565)
++++.++..++.++. .+|+++++|++++|.|+...+.+|.++++|++|++++| .....++ .+...+.++++.+
T Consensus 11 ~~i~c~~~~l~~iP~----~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n-~~~~~i~~~~f~~l~~l~~l~~ 85 (242)
T d1xwdc1 11 RVFLCQESKVTEIPS----DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN-DVLEVIEADVFSNLPKLHEIRI 85 (242)
T ss_dssp SEEEEESCSCSSCCS----CSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESC-TTCCEECSSSEESCTTCCEEEE
T ss_pred CEEEEeCCCCCCcCC----CCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccc-cccceeeccccccccccccccc
Confidence 677788777775543 23467899999999888666667888899999888887 3333222 2233466677666
Q ss_pred cC-CccCccCCccccCCCCCCEEEcccccCcccCch-hccCCCCCCeeeccCCcccccCCcCccCC-CCCCEEEccCccc
Q 037786 91 SG-TRFSGQLPDSICNLRHLRELHLSQCNFYGFLPA-SLGNVTQLAVLSLSFKSFSGHIPPSLSNL-HQLTDVDLGSNSF 167 (565)
Q Consensus 91 ~~-~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~ 167 (565)
.. +.+....+..|.++++|++++++++.+....+. .+..+..+..+...++.+....+..+..+ ..++.+++++|.+
T Consensus 86 ~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l 165 (242)
T d1xwdc1 86 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 165 (242)
T ss_dssp ECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred cccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccc
Confidence 54 355555556667777777777777766543221 22334444444555555554444455444 3566666666666
Q ss_pred cccCcCCcCCCCCCEE-eccCCcccccCCCCCcCCCCCCEEEcccccccCCCchhhcCCCCCCEE
Q 037786 168 DGQFPDIMNLTRISRL-DISNNQLTGSIPSHGSGLQNLAVLRLYNNTLSGTIPSWLFTLPLLRDI 231 (565)
Q Consensus 168 ~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L 231 (565)
...........+++.+ .+.+|.++...+..|.++++|++|++++|.++...+..|..+++|+.+
T Consensus 166 ~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l 230 (242)
T d1xwdc1 166 QEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR 230 (242)
T ss_dssp CEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESS
T ss_pred cccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccC
Confidence 6554444444444444 344455554434445666666666666666654333334444444333
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=2.3e-14 Score=129.98 Aligned_cols=195 Identities=19% Similarity=0.191 Sum_probs=104.9
Q ss_pred CCCEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCCCC---CCCCCcEEEccC-CccccCCchhhhcCCCcCccc
Q 037786 203 NLAVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLDAF---PSKSLRKLYLTN-NRLHGSIPSSIFELANLTYLS 278 (565)
Q Consensus 203 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~ 278 (565)
++++|++++|.+....+..|.++++|++|++++|.+....+.. ..+.++++.+.. +.+....+..+..+++|+.++
T Consensus 30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~ 109 (242)
T d1xwdc1 30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 109 (242)
T ss_dssp CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence 4555555555554333334555555555555555444322211 334445554432 234434445566667777777
Q ss_pred cccccccCccChHhhhcCCCCCEEEccCCccccccCCcccCCCCCccEEEcCCCCCCCCCchhhcc-ccceE-eccCCcC
Q 037786 279 LASNNFSGIVEPYMLAKLVNLAALELSHNSLSFGTTSKVNSSFPQIFILSLSACNISAFPSFLRSL-ELAYL-DLSENNI 356 (565)
Q Consensus 279 l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~-~L~~L-~l~~n~l 356 (565)
+++|.+........+..++.+..+...++.+.......+......+..+++++|+++.++...... ++.++ .+.+|++
T Consensus 110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l 189 (242)
T d1xwdc1 110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNL 189 (242)
T ss_dssp EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTC
T ss_pred cchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhcccccccccc
Confidence 777766543222233344445555555555554433333233346777777777777665544333 44444 4555666
Q ss_pred cccCChhhhhhCCCCccEEEcCCCccCCccCCCCCCCCeEEcC
Q 037786 357 DGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQ 399 (565)
Q Consensus 357 ~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~ 399 (565)
+ .+|...+. ++++|++|++++|+++.++...+.++..|..-
T Consensus 190 ~-~l~~~~f~-~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l 230 (242)
T d1xwdc1 190 E-ELPNDVFH-GASGPVILDISRTRIHSLPSYGLENLKKLRAR 230 (242)
T ss_dssp C-CCCTTTTT-TSCCCSEEECTTSCCCCCCSSSCTTCCEEESS
T ss_pred c-cccHHHhc-CCCCCCEEECCCCcCCccCHHHHcCCcccccC
Confidence 6 55555443 56777778887777777776666666666543
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.57 E-value=3.5e-15 Score=129.86 Aligned_cols=160 Identities=18% Similarity=0.098 Sum_probs=110.0
Q ss_pred ccEEEcCCCccCCccCCCCCCCCeEEcCCCcccccCCCC----CCCCcEEEccccccCccchhhhhhcCCCCCCcccccc
Q 037786 372 LSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGPLPVP----PPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEI 447 (565)
Q Consensus 372 L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~~~~~----~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~ 447 (565)
.+.++.+++.++++|....+++++|+|++|+++...+.. +++|++|++++|++....+..+...
T Consensus 10 ~~~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~------------ 77 (192)
T d1w8aa_ 10 GTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA------------ 77 (192)
T ss_dssp TTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC------------
T ss_pred CCEEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccc------------
Confidence 457888888888888766678888888888886544332 7888888888888887777777766
Q ss_pred CCCCCcEEeCcCCCCCCCc-c--cCCCcccEEECCCCcccccCC---CCCCCCcEeeccCceeeeccchhhhcCCCCCEE
Q 037786 448 GKDSLSYLNLSHNFITKMK-Q--ISWKNLGYLDLRSNLLQGPLL---VPPSSLRVILILNNQFTGEIIHSICDIIALDVL 521 (565)
Q Consensus 448 ~~~~L~~L~l~~n~l~~~~-~--~~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L 521 (565)
+.|++|++++|++..++ . ..+++|+.|++++|.|++..+ ..+++|++|++++|.+...... ..-...++.+
T Consensus 78 --~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~-~~~~~~l~~~ 154 (192)
T d1w8aa_ 78 --SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL-AWFAEWLRKK 154 (192)
T ss_dssp --TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG-HHHHHHHHHH
T ss_pred --cccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccch-HHHhhhhhhh
Confidence 88888888888888883 3 567788888888888776333 2677888888888887533211 1111235556
Q ss_pred eCCCCcCcccCCCCCCCCCCCcccccCC
Q 037786 522 DLSNNRLSGTIPKCIGNFSPWCQTKWPS 549 (565)
Q Consensus 522 ~l~~n~~~~~~p~~l~~l~~L~~l~~~~ 549 (565)
.+..+.+++..|..+.. +..+++..
T Consensus 155 ~l~~~~~~c~~p~~l~~---~~l~~L~~ 179 (192)
T d1w8aa_ 155 SLNGGAARCGAPSKVRD---VQIKDLPH 179 (192)
T ss_dssp CCSGGGCBBCSSTTTTT---SBGGGSCT
T ss_pred cccCCCeEeCCChhhcC---CEeeecCH
Confidence 67777777766655443 34444443
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=8.6e-16 Score=142.62 Aligned_cols=126 Identities=23% Similarity=0.218 Sum_probs=56.8
Q ss_pred CEEEcccccccCCCchhhcCCCCCCEEEccCCcccccCC-CCCCCCCcEEEccCCccccC-CchhhhcCCCcCccccccc
Q 037786 205 AVLRLYNNTLSGTIPSWLFTLPLLRDIDLSDNQLTGHLD-AFPSKSLRKLYLTNNRLHGS-IPSSIFELANLTYLSLASN 282 (565)
Q Consensus 205 ~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n 282 (565)
+.+|++++.+.......+.. .....+.+.......... .....+|++|++++|.++.. ....+..+++|++|++++|
T Consensus 3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~ 81 (284)
T d2astb2 3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 81 (284)
T ss_dssp SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC
T ss_pred CEEECCCCCCCchHHHHHHh-ccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccccc
Confidence 45667665543211111111 123444554444332211 12344566666666655432 2223445566666666666
Q ss_pred cccCccChHhhhcCCCCCEEEccCC-ccccccCCcccCCCCCccEEEcCCC
Q 037786 283 NFSGIVEPYMLAKLVNLAALELSHN-SLSFGTTSKVNSSFPQIFILSLSAC 332 (565)
Q Consensus 283 ~~~~~~~~~~l~~~~~L~~L~l~~~-~i~~~~~~~~~~~~~~L~~L~l~~~ 332 (565)
.+.+.. ...++.+++|++|++++| .+++.....+...+++|++|++++|
T Consensus 82 ~l~~~~-~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c 131 (284)
T d2astb2 82 RLSDPI-VNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 131 (284)
T ss_dssp BCCHHH-HHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred CCCcHH-HHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccc
Confidence 554322 234455556666666554 3333332222334455555555554
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=6.6e-16 Score=143.41 Aligned_cols=100 Identities=19% Similarity=0.184 Sum_probs=43.3
Q ss_pred cEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccccCCccccCCCCCCEEecCCCCCCCc-cCCC-CCCCCCCcEEEc
Q 037786 13 QLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQGEFPENIFRLSNLQMVRLKFNSNLSG-VFPR-SNWTSPLRCLDV 90 (565)
Q Consensus 13 ~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~L~~~~~~~~-~~~~-~~~~~~L~~L~l 90 (565)
+++|++++.+.......+.. ..+..+.++...+.. .........+|++|+++++ .... .+.. +..+++|++|++
T Consensus 3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~-~~~~~~~~~~L~~LdLs~~-~i~~~~l~~l~~~c~~L~~L~L 78 (284)
T d2astb2 3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQ-PLAEHFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSL 78 (284)
T ss_dssp SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECS-CCCSCCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEEC
T ss_pred CEEECCCCCCCchHHHHHHh--ccceEeecccccccc-chhhhccCCCCCEEECCCC-ccCHHHHHHHHHhCCCcccccc
Confidence 46788877654322222222 335556655554432 1122233445666666555 2211 1111 112244444444
Q ss_pred cCCccCccCCccccCCCCCCEEEccc
Q 037786 91 SGTRFSGQLPDSICNLRHLRELHLSQ 116 (565)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~L~~L~L~~ 116 (565)
++|.+++..+..+..+++|++|++++
T Consensus 79 ~~~~l~~~~~~~l~~~~~L~~L~Ls~ 104 (284)
T d2astb2 79 EGLRLSDPIVNTLAKNSNLVRLNLSG 104 (284)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred cccCCCcHHHHHHhcCCCCcCccccc
Confidence 44444433334444444444444444
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.53 E-value=9.6e-15 Score=126.98 Aligned_cols=128 Identities=23% Similarity=0.268 Sum_probs=73.8
Q ss_pred cEEEcCCCcCCCCCchhhhhcCCCccEEEccCCcccc-cCCccccCCCCCCEEecCCCCCCCccCCCCCCCCCCcEEEcc
Q 037786 13 QLLFLDYVDMSTVVPGTLKNLSSSLTSLSLSYCRIQG-EFPENIFRLSNLQMVRLKFNSNLSGVFPRSNWTSPLRCLDVS 91 (565)
Q Consensus 13 ~~L~l~~~~~~~~~~~~~~~l~~~L~~L~l~~~~i~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~ 91 (565)
++++.++++++.++. .+|+++++|+|++|+|+. ..+..|..+++|++|++++|
T Consensus 11 ~~v~Cs~~~L~~iP~----~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N---------------------- 64 (192)
T d1w8aa_ 11 TTVDCTGRGLKEIPR----DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN---------------------- 64 (192)
T ss_dssp TEEECTTSCCSSCCS----CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS----------------------
T ss_pred CEEEEeCCCcCccCC----CCCCCCCEEEeCCCCCcccccccccCCCceEeeeecccc----------------------
Confidence 455666665554432 234556666666666643 22344455555555555544
Q ss_pred CCccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCcccc
Q 037786 92 GTRFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFD 168 (565)
Q Consensus 92 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 168 (565)
.+....+..|..+++|++|++++|.+....+.+|.++++|++|++++|.++...+.+|..+++|+++++++|.+.
T Consensus 65 --~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~ 139 (192)
T d1w8aa_ 65 --QLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp --CCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred --ccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence 444444555566666666666666666665666666666666666666666555556666666666666666554
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.51 E-value=1.4e-14 Score=138.83 Aligned_cols=242 Identities=20% Similarity=0.196 Sum_probs=124.9
Q ss_pred chhhhcCCCcCccccccccccCccC---hHhhhcCCCCCEEEccCCccccccC---------CcccCCCCCccEEEcCCC
Q 037786 265 PSSIFELANLTYLSLASNNFSGIVE---PYMLAKLVNLAALELSHNSLSFGTT---------SKVNSSFPQIFILSLSAC 332 (565)
Q Consensus 265 ~~~~~~~~~L~~L~l~~n~~~~~~~---~~~l~~~~~L~~L~l~~~~i~~~~~---------~~~~~~~~~L~~L~l~~~ 332 (565)
...+.....++.|++++|.+..... ...+...++|+.++++++....... ......+++|+.|++++|
T Consensus 24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n 103 (344)
T d2ca6a1 24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 103 (344)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc
Confidence 3445556667777777766643211 1223445666666666554321110 011233455556666655
Q ss_pred CCCC-----CCchhh-ccccceEeccCCcCcccCChhhhhhCCCCccEEEcCCCccCCccCCCCCCCCeEEcCCCccccc
Q 037786 333 NISA-----FPSFLR-SLELAYLDLSENNIDGQIPNWMWEVGKDTLSFLDLSHNFITEMKQIPWKNLKYLKLQSNLLQGP 406 (565)
Q Consensus 333 ~l~~-----l~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~l~~n~~~~~ 406 (565)
.+.. +...+. ..+|++|++++|.+.......+... +..+... ......+.|+.+++++|++...
T Consensus 104 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~----l~~~~~~------~~~~~~~~L~~l~l~~n~i~~~ 173 (344)
T d2ca6a1 104 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA----LQELAVN------KKAKNAPPLRSIICGRNRLENG 173 (344)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH----HHHHHHH------HHHHTCCCCCEEECCSSCCTGG
T ss_pred ccccccccchhhhhcccccchheeccccccccccccccccc----ccccccc------cccccCcccceeeccccccccc
Confidence 5542 111111 1245555555555432111111000 0000000 0001234566666666655432
Q ss_pred CCC-------CCCCCcEEEccccccCccch-----hhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCC-cc------
Q 037786 407 LPV-------PPPRLQFLLASNNQFTGEII-----QSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKM-KQ------ 467 (565)
Q Consensus 407 ~~~-------~~~~L~~L~l~~n~i~~~~~-----~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~------ 467 (565)
... ..+.+++|++++|+++.... +.+..+ ++|++|++++|.++.. ..
T Consensus 174 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~--------------~~L~~L~Ls~N~i~~~g~~~L~~~l 239 (344)
T d2ca6a1 174 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC--------------QELKVLDLQDNTFTHLGSSALAIAL 239 (344)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC--------------TTCCEEECCSSCCHHHHHHHHHHHG
T ss_pred ccccccchhhhhhhhcccccccccccccccccchhhhhcch--------------hhhcccccccccccccccccccccc
Confidence 211 15667777777777664322 223333 7777788877776543 10
Q ss_pred cCCCcccEEECCCCccccc----CC-----CCCCCCcEeeccCceeeeccc----hhhh-cCCCCCEEeCCCCcCcc
Q 037786 468 ISWKNLGYLDLRSNLLQGP----LL-----VPPSSLRVILILNNQFTGEII----HSIC-DIIALDVLDLSNNRLSG 530 (565)
Q Consensus 468 ~~~~~L~~L~ls~n~l~~~----~~-----~~~~~L~~L~l~~n~~~~~~~----~~l~-~~~~L~~L~l~~n~~~~ 530 (565)
..+++|++|++++|.+.+. +. ...++|++|++++|.++.... ..+. +.++|+.|+|++|.+..
T Consensus 240 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~ 316 (344)
T d2ca6a1 240 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316 (344)
T ss_dssp GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred cccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence 4567788888888877631 11 134678888888888876533 3332 57889999999999863
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=6.9e-14 Score=117.12 Aligned_cols=120 Identities=14% Similarity=0.048 Sum_probs=87.1
Q ss_pred CCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCc-ccCCCcccEEECCCCcccccCCC
Q 037786 411 PPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMK-QISWKNLGYLDLRSNLLQGPLLV 489 (565)
Q Consensus 411 ~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~L~~L~ls~n~l~~~~~~ 489 (565)
+..+++|++++|+|+.. +..+..+ ++|+.|++++|+|..++ ...+++|+.|++++|+++...+.
T Consensus 17 ~~~lr~L~L~~n~I~~i-~~~~~~l--------------~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~ 81 (162)
T d1a9na_ 17 AVRDRELDLRGYKIPVI-ENLGATL--------------DQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEG 81 (162)
T ss_dssp TTSCEEEECTTSCCCSC-CCGGGGT--------------TCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSC
T ss_pred cCcCcEEECCCCCCCcc-Ccccccc--------------ccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCcc
Confidence 45677777777777644 3333444 78888888888888774 36778888888888888764333
Q ss_pred ---CCCCCcEeeccCceeeecc-chhhhcCCCCCEEeCCCCcCcccCCC----CCCCCCCCcccc
Q 037786 490 ---PPSSLRVILILNNQFTGEI-IHSICDIIALDVLDLSNNRLSGTIPK----CIGNFSPWCQTK 546 (565)
Q Consensus 490 ---~~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~n~~~~~~p~----~l~~l~~L~~l~ 546 (565)
.+++|+.|++++|.+++.. ...+..+++|++|++++|++. ..|. .++.+++|+.|+
T Consensus 82 ~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 82 LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp HHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred ccccccccccceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence 6788888888888887543 256788889999999999886 4453 356788888877
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.40 E-value=5.5e-13 Score=105.89 Aligned_cols=115 Identities=19% Similarity=0.220 Sum_probs=79.5
Q ss_pred cEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcc--cCCCcccEEECCCCcccccC-CCCC
Q 037786 415 QFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQ--ISWKNLGYLDLRSNLLQGPL-LVPP 491 (565)
Q Consensus 415 ~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~ls~n~l~~~~-~~~~ 491 (565)
++|++++|+++.. ..+..+ ++|++|++++|+++++|. ..+++|+.|++++|.+++.. ...+
T Consensus 1 R~L~Ls~n~l~~l--~~l~~l--------------~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l 64 (124)
T d1dcea3 1 RVLHLAHKDLTVL--CHLEQL--------------LLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANL 64 (124)
T ss_dssp SEEECTTSCCSSC--CCGGGG--------------TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTC
T ss_pred CEEEcCCCCCCCC--cccccC--------------CCCCEEECCCCccCcchhhhhhhhcccccccccccccccCccccc
Confidence 4677777777643 235666 778888888888887743 66778888888888876521 2277
Q ss_pred CCCcEeeccCceeeecc-chhhhcCCCCCEEeCCCCcCccc--CCCCC-CCCCCCccc
Q 037786 492 SSLRVILILNNQFTGEI-IHSICDIIALDVLDLSNNRLSGT--IPKCI-GNFSPWCQT 545 (565)
Q Consensus 492 ~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~n~~~~~--~p~~l-~~l~~L~~l 545 (565)
++|+.|++++|++++.. ...+..+++|+.|++++|++.+. .++.+ ..+++|+.+
T Consensus 65 ~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L 122 (124)
T d1dcea3 65 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122 (124)
T ss_dssp SSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred cccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence 88888888888887553 35678889999999999988732 22222 336666654
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=2.8e-13 Score=113.37 Aligned_cols=63 Identities=16% Similarity=0.142 Sum_probs=25.9
Q ss_pred cCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCcccc
Q 037786 104 CNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFD 168 (565)
Q Consensus 104 ~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 168 (565)
..+++|++|++++|.+... ..|..+++|+.|++++|.++...+..+..+++|+.|++++|.+.
T Consensus 38 ~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i~ 100 (162)
T d1a9na_ 38 ATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 100 (162)
T ss_dssp GGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC
T ss_pred cccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccccceecccccc
Confidence 3344444444444444322 12344444444444444444322222333444444444444443
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.39 E-value=1e-12 Score=104.34 Aligned_cols=112 Identities=18% Similarity=0.106 Sum_probs=62.6
Q ss_pred eEEcCCCcccccCC-CCCCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcc-cCCCc
Q 037786 395 YLKLQSNLLQGPLP-VPPPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQ-ISWKN 472 (565)
Q Consensus 395 ~L~l~~n~~~~~~~-~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~ 472 (565)
.|++++|.++.... ..++.|++|++++|+|++ .|..+..+ ++|++|++++|.++.+|. ..+++
T Consensus 2 ~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~-lp~~~~~l--------------~~L~~L~l~~N~i~~l~~~~~l~~ 66 (124)
T d1dcea3 2 VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA-LPPALAAL--------------RCLEVLQASDNALENVDGVANLPR 66 (124)
T ss_dssp EEECTTSCCSSCCCGGGGTTCCEEECCSSCCCC-CCGGGGGC--------------TTCCEEECCSSCCCCCGGGTTCSS
T ss_pred EEEcCCCCCCCCcccccCCCCCEEECCCCccCc-chhhhhhh--------------hcccccccccccccccCccccccc
Confidence 34444444442211 114555666666666653 34445555 666666666666666643 56666
Q ss_pred ccEEECCCCcccccCC----CCCCCCcEeeccCceeeec---cchhhhcCCCCCEE
Q 037786 473 LGYLDLRSNLLQGPLL----VPPSSLRVILILNNQFTGE---IIHSICDIIALDVL 521 (565)
Q Consensus 473 L~~L~ls~n~l~~~~~----~~~~~L~~L~l~~n~~~~~---~~~~l~~~~~L~~L 521 (565)
|+.|++++|++.+... ..+++|++|++++|+++.. .......+|+|+.|
T Consensus 67 L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L 122 (124)
T d1dcea3 67 LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122 (124)
T ss_dssp CCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred cCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence 6666666666654211 1566777777777776533 23344667777765
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.38 E-value=6.8e-14 Score=133.98 Aligned_cols=233 Identities=18% Similarity=0.120 Sum_probs=126.1
Q ss_pred hhhhcCCCccEEEccCCccccc----CCccccCCCCCCEEecCCCCCC--Cc--------cCCCCCCCCCCcEEEccCCc
Q 037786 29 TLKNLSSSLTSLSLSYCRIQGE----FPENIFRLSNLQMVRLKFNSNL--SG--------VFPRSNWTSPLRCLDVSGTR 94 (565)
Q Consensus 29 ~~~~l~~~L~~L~l~~~~i~~~----~~~~~~~l~~L~~L~L~~~~~~--~~--------~~~~~~~~~~L~~L~l~~~~ 94 (565)
.+.+. ..++.|+|++|.++.. +...+...++|+.++++++... .. ........++|++|++++|.
T Consensus 26 ~L~~~-~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~ 104 (344)
T d2ca6a1 26 VLLED-DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 104 (344)
T ss_dssp HHHHC-SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHhhC-CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence 34443 5555666665555432 2233445556666666544110 00 00111223556666666665
Q ss_pred cCcc----CCccccCCCCCCEEEcccccCcccCchh-------------ccCCCCCCeeeccCCccccc----CCcCccC
Q 037786 95 FSGQ----LPDSICNLRHLRELHLSQCNFYGFLPAS-------------LGNVTQLAVLSLSFKSFSGH----IPPSLSN 153 (565)
Q Consensus 95 ~~~~----~~~~~~~l~~L~~L~L~~~~~~~~~~~~-------------~~~l~~L~~L~l~~~~~~~~----~~~~~~~ 153 (565)
+... +...+..+++|++|++++|.+....... ....+.|+.++++++.+... +...+..
T Consensus 105 i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~ 184 (344)
T d2ca6a1 105 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 184 (344)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred cccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhh
Confidence 5432 2233345667777777777654221111 12356677777777766522 2223445
Q ss_pred CCCCCEEEccCcccccc------CcCCcCCCCCCEEeccCCccccc----CCCCCcCCCCCCEEEcccccccCCCch---
Q 037786 154 LHQLTDVDLGSNSFDGQ------FPDIMNLTRISRLDISNNQLTGS----IPSHGSGLQNLAVLRLYNNTLSGTIPS--- 220 (565)
Q Consensus 154 l~~L~~L~l~~~~~~~~------~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~--- 220 (565)
.+.|+.+++++|.+... ...+..+++|+.|++++|.++.. +...+..+++|++|++++|.+......
T Consensus 185 ~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~ 264 (344)
T d2ca6a1 185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 264 (344)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred hhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHH
Confidence 67777777777776431 12255677777777777776532 223455677788888888776543222
Q ss_pred -hhc--CCCCCCEEEccCCcccccCCC-------CCCCCCcEEEccCCcccc
Q 037786 221 -WLF--TLPLLRDIDLSDNQLTGHLDA-------FPSKSLRKLYLTNNRLHG 262 (565)
Q Consensus 221 -~l~--~~~~L~~L~l~~~~~~~~~~~-------~~~~~L~~L~l~~~~~~~ 262 (565)
.+. ..+.|++|++++|.+...... ...+.|+.|++++|.+..
T Consensus 265 ~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~ 316 (344)
T d2ca6a1 265 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316 (344)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence 222 235688888888876532111 034678888888887763
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.20 E-value=1.9e-13 Score=118.65 Aligned_cols=120 Identities=20% Similarity=0.170 Sum_probs=78.5
Q ss_pred CCCCcEEEccccccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCcc--cCCCcccEEECCCCcccccCC
Q 037786 411 PPRLQFLLASNNQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMKQ--ISWKNLGYLDLRSNLLQGPLL 488 (565)
Q Consensus 411 ~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~ls~n~l~~~~~ 488 (565)
+++|++|++++|+|+.. ..+..+ ++|++|++++|.+..+|. ..+++|+.|++++|.++...+
T Consensus 47 L~~L~~L~Ls~n~I~~i--~~l~~l--------------~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~ 110 (198)
T d1m9la_ 47 LKACKHLALSTNNIEKI--SSLSGM--------------ENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSG 110 (198)
T ss_dssp TTTCCEEECSEEEESCC--CCHHHH--------------TTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHHH
T ss_pred ccccceeECcccCCCCc--ccccCC--------------ccccChhhccccccccccccccccccccccccccccccccc
Confidence 56666777777766643 235555 777777777777777643 344567777777777765211
Q ss_pred -CCCCCCcEeeccCceeeeccc-hhhhcCCCCCEEeCCCCcCcccCCCC----------CCCCCCCcccc
Q 037786 489 -VPPSSLRVILILNNQFTGEII-HSICDIIALDVLDLSNNRLSGTIPKC----------IGNFSPWCQTK 546 (565)
Q Consensus 489 -~~~~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~p~~----------l~~l~~L~~l~ 546 (565)
..+++|+.|++++|.+++... ..+..+++|+.|++++|++....++. +..+++|+.|+
T Consensus 111 ~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD 180 (198)
T d1m9la_ 111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred ccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence 156777788888877765432 45777888888888888876544433 34577777776
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=4.3e-10 Score=92.89 Aligned_cols=104 Identities=14% Similarity=0.122 Sum_probs=61.2
Q ss_pred cEEEccCCccCccCCccccCCCCCCEEEcccc-cCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccC
Q 037786 86 RCLDVSGTRFSGQLPDSICNLRHLRELHLSQC-NFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGS 164 (565)
Q Consensus 86 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 164 (565)
..++++++.++ ..|..+..+++|++|+++++ .++.+.+.+|.++++|+.|++++|++....+.+|..+++|++|++++
T Consensus 11 ~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~ 89 (156)
T d2ifga3 11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (156)
T ss_dssp SCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence 33555555555 34555566666666666544 35555556666666666666666666655556666666666666666
Q ss_pred ccccccCcCCcCCCCCCEEeccCCcc
Q 037786 165 NSFDGQFPDIMNLTRISRLDISNNQL 190 (565)
Q Consensus 165 ~~~~~~~~~~~~~~~L~~L~l~~~~~ 190 (565)
|.+..+.........|+.|++++|++
T Consensus 90 N~l~~l~~~~~~~~~l~~L~L~~Np~ 115 (156)
T d2ifga3 90 NALESLSWKTVQGLSLQELVLSGNPL 115 (156)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred CCCcccChhhhccccccccccCCCcc
Confidence 66665444433333455666665554
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.08 E-value=7.6e-13 Score=114.81 Aligned_cols=112 Identities=24% Similarity=0.265 Sum_probs=57.4
Q ss_pred CCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeeccCCcccccCCcCccCCCCCCEEEccCccccccCcCCcCCC
Q 037786 99 LPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLSFKSFSGHIPPSLSNLHQLTDVDLGSNSFDGQFPDIMNLT 178 (565)
Q Consensus 99 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 178 (565)
++.++..+++|++|++++|.++.. ..+.++++|+.|++++|.++ .++.....+++|+.|++++|.+... +.+..++
T Consensus 40 l~~sl~~L~~L~~L~Ls~n~I~~i--~~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l-~~~~~l~ 115 (198)
T d1m9la_ 40 MDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-SGIEKLV 115 (198)
T ss_dssp CHHHHHHTTTCCEEECSEEEESCC--CCHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH-HHHHHHH
T ss_pred hhhHHhcccccceeECcccCCCCc--ccccCCccccChhhcccccc-ccccccccccccccccccccccccc-ccccccc
Confidence 344555566666666666665543 23555666666666666555 2333333344556666666555432 2244455
Q ss_pred CCCEEeccCCcccccCC-CCCcCCCCCCEEEcccccc
Q 037786 179 RISRLDISNNQLTGSIP-SHGSGLQNLAVLRLYNNTL 214 (565)
Q Consensus 179 ~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l 214 (565)
+|+.|++++|++..... ..+..+++|+.|++++|++
T Consensus 116 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l 152 (198)
T d1m9la_ 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred cccccccccchhccccccccccCCCccceeecCCCcc
Confidence 55555555555543211 2344455555555555544
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=1e-09 Score=90.59 Aligned_cols=106 Identities=15% Similarity=0.154 Sum_probs=77.0
Q ss_pred CCEEecCCCCCCCccCCCCCCCCCCcEEEccCC-ccCccCCccccCCCCCCEEEcccccCcccCchhccCCCCCCeeecc
Q 037786 61 LQMVRLKFNSNLSGVFPRSNWTSPLRCLDVSGT-RFSGQLPDSICNLRHLRELHLSQCNFYGFLPASLGNVTQLAVLSLS 139 (565)
Q Consensus 61 L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l~ 139 (565)
.+.++.+++ .....+..+...++|++|++.++ .++...+.+|.++++|+.|++++|.++.+.+.+|..+++|++|+++
T Consensus 10 ~~~l~c~~~-~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls 88 (156)
T d2ifga3 10 SSGLRCTRD-GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (156)
T ss_dssp SSCEECCSS-CCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CCeEEecCC-CCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence 344555444 33333333344466666666554 4665666788999999999999999998888999999999999999
Q ss_pred CCcccccCCcCccCCCCCCEEEccCcccc
Q 037786 140 FKSFSGHIPPSLSNLHQLTDVDLGSNSFD 168 (565)
Q Consensus 140 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 168 (565)
+|+++...+..+.. ..|+.|++++|++.
T Consensus 89 ~N~l~~l~~~~~~~-~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 89 FNALESLSWKTVQG-LSLQELVLSGNPLH 116 (156)
T ss_dssp SSCCSCCCSTTTCS-CCCCEEECCSSCCC
T ss_pred CCCCcccChhhhcc-ccccccccCCCccc
Confidence 99998544445544 47999999999874
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=8.7e-08 Score=79.30 Aligned_cols=73 Identities=23% Similarity=0.170 Sum_probs=45.0
Q ss_pred CCCcEEeCcCCCCCCC-cc----cCCCcccEEECCCCcccccCCC---CCCCCcEeeccCceeeeccc-------hhhhc
Q 037786 450 DSLSYLNLSHNFITKM-KQ----ISWKNLGYLDLRSNLLQGPLLV---PPSSLRVILILNNQFTGEII-------HSICD 514 (565)
Q Consensus 450 ~~L~~L~l~~n~l~~~-~~----~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~l~~n~~~~~~~-------~~l~~ 514 (565)
++|++|++++|+|+++ +. ..+++|+.|++++|.+++..+. ....|+.|++++|+++.... ..+..
T Consensus 65 ~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~ 144 (162)
T d1koha1 65 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRER 144 (162)
T ss_dssp TTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTT
T ss_pred CCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHH
Confidence 7777777887777776 22 3466777777777776652211 33456666666666654322 23566
Q ss_pred CCCCCEEe
Q 037786 515 IIALDVLD 522 (565)
Q Consensus 515 ~~~L~~L~ 522 (565)
+|+|+.||
T Consensus 145 ~P~L~~LD 152 (162)
T d1koha1 145 FPKLLRLD 152 (162)
T ss_dssp STTCCEET
T ss_pred CCCCCEEC
Confidence 77777775
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=2.1e-08 Score=83.07 Aligned_cols=79 Identities=20% Similarity=0.130 Sum_probs=62.4
Q ss_pred cCCCcccEEECCCCcccccCC--C---CCCCCcEeeccCceeeeccchhhhcCCCCCEEeCCCCcCcccCCCC-------
Q 037786 468 ISWKNLGYLDLRSNLLQGPLL--V---PPSSLRVILILNNQFTGEIIHSICDIIALDVLDLSNNRLSGTIPKC------- 535 (565)
Q Consensus 468 ~~~~~L~~L~ls~n~l~~~~~--~---~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~p~~------- 535 (565)
..+++|++|++++|++++..+ . .+++|+.|++++|.+++..+-.+....+|++|++++|++.....+.
T Consensus 62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i 141 (162)
T d1koha1 62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI 141 (162)
T ss_dssp HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence 468999999999999986322 2 6899999999999998765544555678999999999998554433
Q ss_pred CCCCCCCcccc
Q 037786 536 IGNFSPWCQTK 546 (565)
Q Consensus 536 l~~l~~L~~l~ 546 (565)
+..+++|+.|+
T Consensus 142 ~~~~P~L~~LD 152 (162)
T d1koha1 142 RERFPKLLRLD 152 (162)
T ss_dssp HTTSTTCCEET
T ss_pred HHHCCCCCEEC
Confidence 46788888876
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.99 E-value=2.7e-06 Score=70.42 Aligned_cols=79 Identities=16% Similarity=0.141 Sum_probs=46.3
Q ss_pred CCCcEEeCcCCCCCCC-c-c-----cCCCcccEEECCCCcccccC-------CCCCCCCcEeeccCceeeec-------c
Q 037786 450 DSLSYLNLSHNFITKM-K-Q-----ISWKNLGYLDLRSNLLQGPL-------LVPPSSLRVILILNNQFTGE-------I 508 (565)
Q Consensus 450 ~~L~~L~l~~n~l~~~-~-~-----~~~~~L~~L~ls~n~l~~~~-------~~~~~~L~~L~l~~n~~~~~-------~ 508 (565)
+.|++|++++|.+.+. . . ...+.|++|++++|.+.+.. ....++|++|++++|.+... +
T Consensus 44 ~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l 123 (167)
T d1pgva_ 44 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM 123 (167)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred CccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHH
Confidence 5666666666666543 1 1 33456677777777665311 11556677777776654321 3
Q ss_pred chhhhcCCCCCEEeCCCCcC
Q 037786 509 IHSICDIIALDVLDLSNNRL 528 (565)
Q Consensus 509 ~~~l~~~~~L~~L~l~~n~~ 528 (565)
.+.+...++|+.|+++.+..
T Consensus 124 ~~~L~~n~sL~~l~l~~~~~ 143 (167)
T d1pgva_ 124 MMAIEENESLLRVGISFASM 143 (167)
T ss_dssp HHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhCCCccEeeCcCCCc
Confidence 45556678888888876643
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.68 E-value=8.4e-06 Score=67.29 Aligned_cols=66 Identities=18% Similarity=0.157 Sum_probs=34.0
Q ss_pred HHHhhCCCCCcEEEcCCC-cCCCCCch----hhhhcCCCccEEEccCCcccccCC----ccccCCCCCCEEecCCC
Q 037786 3 EALVQNVTKLQLLFLDYV-DMSTVVPG----TLKNLSSSLTSLSLSYCRIQGEFP----ENIFRLSNLQMVRLKFN 69 (565)
Q Consensus 3 ~~~~~~~~~L~~L~l~~~-~~~~~~~~----~~~~l~~~L~~L~l~~~~i~~~~~----~~~~~l~~L~~L~L~~~ 69 (565)
+++..+.+.|++|+|+++ .+...... ++... ++|++|++++|.++.... ..+...+.|++|++++|
T Consensus 8 ~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n-~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n 82 (167)
T d1pgva_ 8 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNS-KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN 82 (167)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTC-SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred HHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhC-CccceeeccccccchhHHHHHhhhhhhcccccceeeehh
Confidence 455566677777777764 34433222 23232 556667776666653222 22333444555555444
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.55 E-value=2.1e-05 Score=64.84 Aligned_cols=108 Identities=13% Similarity=0.081 Sum_probs=60.3
Q ss_pred CCCCcEEEccc-cccCccchhhhhhcCCCCCCccccccCCCCCcEEeCcCCCCCCCc-c------cCCCcccEEECCCCc
Q 037786 411 PPRLQFLLASN-NQFTGEIIQSICSSSTLEIPSWISEIGKDSLSYLNLSHNFITKMK-Q------ISWKNLGYLDLRSNL 482 (565)
Q Consensus 411 ~~~L~~L~l~~-n~i~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~------~~~~~L~~L~ls~n~ 482 (565)
.|.|++|++++ +.++......++.. ....++|++|++++|.+.+.. . ...++++.+++++|.
T Consensus 16 ~~~L~~L~L~~~~~i~~~~~~~l~~a----------l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~ 85 (166)
T d1io0a_ 16 DPDLEEVNLNNIMNIPVPTLKACAEA----------LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 85 (166)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHH----------HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred CCCCcEEEcCCCCCCCHHHHHHHHHH----------HhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccc
Confidence 35566666665 34554444333321 000166667777776665441 1 345667777777776
Q ss_pred ccccC-------CCCCCCCcEeec--cCceeeec----cchhhhcCCCCCEEeCCCCcC
Q 037786 483 LQGPL-------LVPPSSLRVILI--LNNQFTGE----IIHSICDIIALDVLDLSNNRL 528 (565)
Q Consensus 483 l~~~~-------~~~~~~L~~L~l--~~n~~~~~----~~~~l~~~~~L~~L~l~~n~~ 528 (565)
+.+.. ....++|+.++| ++|.+++. +.+.+...++|+.|+++.+..
T Consensus 86 ~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~ 144 (166)
T d1io0a_ 86 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 144 (166)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred ccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence 64211 115566766444 45666553 445567788888888877654
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.11 E-value=5.6e-05 Score=62.17 Aligned_cols=67 Identities=15% Similarity=0.173 Sum_probs=37.0
Q ss_pred hHHHhhCCCCCcEEEcCC-CcCCCCCchh----hhhcCCCccEEEccCCcccccCC----ccccCCCCCCEEecCCC
Q 037786 2 MEALVQNVTKLQLLFLDY-VDMSTVVPGT----LKNLSSSLTSLSLSYCRIQGEFP----ENIFRLSNLQMVRLKFN 69 (565)
Q Consensus 2 ~~~~~~~~~~L~~L~l~~-~~~~~~~~~~----~~~l~~~L~~L~l~~~~i~~~~~----~~~~~l~~L~~L~L~~~ 69 (565)
++.+..+.+.|++|++++ +.+++..... +... ++|++|++++|.++.... ..+...+.++.+++++|
T Consensus 9 l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n-~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~ 84 (166)
T d1io0a_ 9 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTN-TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 84 (166)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTC-CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcC-CccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccc
Confidence 345566677778887776 3455443322 2233 667777777776654322 23344455555555544
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