Citrus Sinensis ID: 037792
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 558 | 2.2.26 [Sep-21-2011] | |||||||
| C0LGQ5 | 1249 | LRR receptor-like serine/ | no | no | 0.802 | 0.358 | 0.306 | 3e-49 | |
| C0LGW6 | 966 | LRR receptor-like serine/ | no | no | 0.761 | 0.439 | 0.316 | 4e-49 | |
| Q6XAT2 | 967 | LRR receptor-like serine/ | no | no | 0.817 | 0.471 | 0.301 | 7e-49 | |
| Q9LRT1 | 1016 | Probably inactive leucine | no | no | 0.790 | 0.434 | 0.330 | 1e-48 | |
| O65440 | 992 | Leucine-rich repeat recep | no | no | 0.810 | 0.455 | 0.318 | 2e-48 | |
| Q9FIZ3 | 1252 | LRR receptor-like serine/ | no | no | 0.810 | 0.361 | 0.302 | 2e-48 | |
| Q42371 | 976 | LRR receptor-like serine/ | no | no | 0.745 | 0.426 | 0.307 | 4e-48 | |
| Q9ZPS9 | 1143 | Serine/threonine-protein | no | no | 0.817 | 0.398 | 0.319 | 6e-48 | |
| Q8GUQ5 | 1207 | Brassinosteroid LRR recep | N/A | no | 0.802 | 0.371 | 0.342 | 9e-48 | |
| Q8L899 | 1207 | Systemin receptor SR160 O | N/A | no | 0.792 | 0.366 | 0.324 | 1e-47 |
| >sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 197 bits (500), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 159/518 (30%), Positives = 254/518 (49%), Gaps = 70/518 (13%)
Query: 5 SAQHGLHSLDISRNSFSGKLPQNM-----------------GIVLPK------LVYMNIS 41
S L LD+S NS +G +P+ + G + P L ++ +
Sbjct: 357 SKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLY 416
Query: 42 KNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPN 101
N+ EG +P I ++ L +L + N F+GE+ Q + NC SL+ +D+ N+F G+I P+
Sbjct: 417 HNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQE-IGNCTSLKMIDMFGNHFEGEIPPS 475
Query: 102 YMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSM 161
L L L+L N G + L +L +LD+++N+LSG IPS G L+ L +
Sbjct: 476 IGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLML 535
Query: 162 SKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTF 221
N L+GN+P +L +L +N+S N L+G++ SS + NN IP
Sbjct: 536 YNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIP--- 592
Query: 222 FRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIP-- 279
L + NL L L N L G IP L +R+L ++D+S N L G+IP
Sbjct: 593 ----------LELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQ 642
Query: 280 -ACITNMLFSRVENGYLYG--------FDIVLRMYLD-----DAYVSNYYNSTVELL--L 323
+ + N +L G + + L ++ + +N T L+ L
Sbjct: 643 LVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNCTKLLVLSL 702
Query: 324 DGND-----GRMLGALVAVNFMTKNRYESYKGDILELMAGLD------LSNNELTGDIPS 372
DGN + +G L A+N + ++ + + G + + M L LS N LTG+IP
Sbjct: 703 DGNSLNGSIPQEIGNLGALNVLNLDKNQ-FSGSLPQAMGKLSKLYELRLSRNSLTGEIPV 761
Query: 373 EIGDLQNIH-GLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTF 431
EIG LQ++ L+LS+N +G IP + L +E+LDLSHN+L G++P + ++ SL
Sbjct: 762 EIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYL 821
Query: 432 DVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGPAINK 469
+VS+NNL G + K+QFS + S+ GN LCG +++
Sbjct: 822 NVSFNNLGGKL--KKQFSRWPADSFLGNTGLCGSPLSR 857
|
Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|C0LGW6|ERL1_ARATH LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 196 bits (498), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 165/522 (31%), Positives = 251/522 (48%), Gaps = 97/522 (18%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQ------------ 57
L S+D+ N +G++P +G LVY+++S+N G+IP SI K++
Sbjct: 97 LQSIDLQGNKLAGQIPDEIGNC-ASLVYLDLSENLLYGDIPFSISKLKQLETLNLKNNQL 155
Query: 58 ------------GLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNL 105
L+ LD++ N+ GE+S+ L N L++L L N G + + L
Sbjct: 156 TGPVPATLTQIPNLKRLDLAGNHLTGEISRLLYWNEV-LQYLGLRGNMLTGTLSSDMCQL 214
Query: 106 TRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNL 165
T LW + NN +G I + + T +LDIS N+++G IP +G F + LS+ N
Sbjct: 215 TGLWYFDVRGNNLTGTIPESIGNCTSFQILDISYNQITGEIPYNIG-FLQVATLSLQGNR 273
Query: 166 LEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRG 224
L G IP + +L +L++S+N L G + L NLS LYL N L G IP+
Sbjct: 274 LTGRIPEVIGLMQALAVLDLSDNELVGPIPPILGNLSFTGKLYLHGNMLTGPIPS----- 328
Query: 225 SALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITN 284
+ S L L L N L G IP +L L +L +++++NRL G IP+ I++
Sbjct: 329 --------ELGNMSRLSYLQLNDNKLVGTIPPELGKLEQLFELNLANNRLVGPIPSNISS 380
Query: 285 MLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNR 344
L F++ N + ++ L R LG+L +N + N
Sbjct: 381 C-------AALNQFNVH----------GNLLSGSIPLAF-----RNLGSLTYLNLSSNN- 417
Query: 345 YESYKGDI-LEL-----MAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESF 398
+KG I +EL + LDLS N +G IP +GDL+++ LNLS N LSG +P F
Sbjct: 418 ---FKGKIPVELGHIINLDKLDLSGNNFSGSIPLTLGDLEHLLILNLSRNHLSGQLPAEF 474
Query: 399 SNLKMIESLDLSHNKL------------------------NGQIPPQLTELHSLSTFDVS 434
NL+ I+ +D+S N L +G+IP QLT +L +VS
Sbjct: 475 GNLRSIQMIDVSFNLLSGVIPTELGQLQNLNSLILNNNKLHGKIPDQLTNCFTLVNLNVS 534
Query: 435 YNNLSGPIPDKEQFSTFDESSYRGNLFLCGPAINKGCTNLPE 476
+NNLSG +P + FS F +S+ GN +LCG + C LP+
Sbjct: 535 FNNLSGIVPPMKNFSRFAPASFVGNPYLCGNWVGSICGPLPK 576
|
Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ER and ERL2. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q6XAT2|ERL2_ARATH LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 195 bits (496), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 160/530 (30%), Positives = 256/530 (48%), Gaps = 74/530 (13%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
L +D S N G +P ++ L +L ++N+ N G IP+++ ++ L+ LD++ N
Sbjct: 123 LAYVDFSTNLLFGDIPFSIS-KLKQLEFLNLKNNQLTGPIPATLTQIPNLKTLDLARNQL 181
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRS 129
GE+ + L N L++L L N G + P+ LT LW + NN +G I + +
Sbjct: 182 TGEIPRLLYWNEV-LQYLGLRGNMLTGTLSPDMCQLTGLWYFDVRGNNLTGTIPESIGNC 240
Query: 130 TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENN 189
T +LD+S N+++G IP +G F + LS+ N L G IP + +L +L++S+N
Sbjct: 241 TSFEILDVSYNQITGVIPYNIG-FLQVATLSLQGNKLTGRIPEVIGLMQALAVLDLSDNE 299
Query: 190 LSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGN 248
L+G + L NLS LYL N L G IP S L L L NE
Sbjct: 300 LTGPIPPILGNLSFTGKLYLHGNKLTGQIPPELGNMSRLSYLQLNDNE------------ 347
Query: 249 YLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDD 308
L G IP +L L +L +++++N L G IP+ I++ L F++
Sbjct: 348 -LVGKIPPELGKLEQLFELNLANNNLVGLIPSNISSC-------AALNQFNVH------- 392
Query: 309 AYVSNYYNSTVELLLDGNDGRMLGALVAVNFMT---KNRYESYKGDILELMAGLDLSNNE 365
N+ + V L + R LG+L +N + K + + G I+ L LDLS N
Sbjct: 393 ---GNFLSGAVPL-----EFRNLGSLTYLNLSSNSFKGKIPAELGHIINLDT-LDLSGNN 443
Query: 366 LTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHN------------- 412
+G IP +GDL+++ LNLS N L+G++P F NL+ I+ +D+S N
Sbjct: 444 FSGSIPLTLGDLEHLLILNLSRNHLNGTLPAEFGNLRSIQIIDVSFNFLAGVIPTELGQL 503
Query: 413 -----------KLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLF 461
K++G+IP QLT SL+ ++S+NNLSG IP + F+ F +S+ GN F
Sbjct: 504 QNINSLILNNNKIHGKIPDQLTNCFSLANLNISFNNLSGIIPPMKNFTRFSPASFFGNPF 563
Query: 462 LCGPAINKGCTNLPELLEPSSKGAEDESEVDLVAFYWSFVASCVTVMLGL 511
LCG + C PS ++ + V ++ F+ + + +
Sbjct: 564 LCGNWVGSICG-------PSLPKSQVFTRVAVICMVLGFITLICMIFIAV 606
|
Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ERL1 and ER. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LRT1|Y3804_ARATH Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 OS=Arabidopsis thaliana GN=At3g28040 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 194 bits (494), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 170/515 (33%), Positives = 261/515 (50%), Gaps = 74/515 (14%)
Query: 3 LTSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSS---------- 52
+TS QH LD++ NSFSG L ++ L Y+++S N EG IPS+
Sbjct: 147 ITSLQH----LDLTGNSFSGTLSDDLFNNCSSLRYLSLSHNHLEGQIPSTLFRCSVLNSL 202
Query: 53 ----------------IGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVG 96
I +++ LR LD+SSN+ +G + +++ +L+ L L N F G
Sbjct: 203 NLSRNRFSGNPSFVSGIWRLERLRALDLSSNSLSGSIPLG-ILSLHNLKELQLQRNQFSG 261
Query: 97 QIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTL 156
+ + L + L +N+FSG++ L + L D+SNN LSG P W+G+ + L
Sbjct: 262 ALPSDIGLCPHLNRVDLSSNHFSGELPRTLQKLKSLNHFDVSNNLLSGDFPPWIGDMTGL 321
Query: 157 QILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGG 215
L S N L G +P +NL SL+ LN+SEN LSG + +L + + + L+ N G
Sbjct: 322 VHLDFSSNELTGKLPSSISNLRSLKDLNLSENKLSGEVPESLESCKELMIVQLKGNDFSG 381
Query: 216 SIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHL-RKLGIMDISHNRL 274
+IP+ FF DL + E + GN L G IP L L +D+SHN L
Sbjct: 382 NIPDGFF--------DLGLQE------MDFSGNGLTGSIPRGSSRLFESLIRLDLSHNSL 427
Query: 275 NGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGAL 334
GSIP + G I +R YL+ ++ N++N+ V ++ L L
Sbjct: 428 TGSIPGEV--------------GLFIHMR-YLNLSW--NHFNTRVPPEIE-----FLQNL 465
Query: 335 VAVNFMTKNRYESYKGDILEL--MAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSG 392
++ S DI E + L L N LTG IP IG+ ++ L+LSHN L+G
Sbjct: 466 TVLDLRNSALIGSVPADICESQSLQILQLDGNSLTGSIPEGIGNCSSLKLLSLSHNNLTG 525
Query: 393 SIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFD 452
IP+S SNL+ ++ L L NKL+G+IP +L +L +L +VS+N L G +P + F + D
Sbjct: 526 PIPKSLSNLQELKILKLEANKLSGEIPKELGDLQNLLLVNVSFNRLIGRLPLGDVFQSLD 585
Query: 453 ESSYRGNLFLCGPAINKGCT-NLPE--LLEPSSKG 484
+S+ +GNL +C P + CT N+P+ ++ P+S G
Sbjct: 586 QSAIQGNLGICSPLLRGPCTLNVPKPLVINPNSYG 620
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O65440|BAME3_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 OS=Arabidopsis thaliana GN=BAM3 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 194 bits (492), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 160/503 (31%), Positives = 256/503 (50%), Gaps = 51/503 (10%)
Query: 9 GLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNN 68
GL L+IS N F G+L + +LV ++ NSF G++P S+ + L LD+ N
Sbjct: 126 GLEVLNISSNVFEGELETRGFSQMTQLVTLDAYDNSFNGSLPLSLTTLTRLEHLDLGGNY 185
Query: 69 FAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYL-YNNNFSGKIKDGLL 127
F GE+ +S + SL++L LS N+ G+I N+T L LYL Y N++ G I
Sbjct: 186 FDGEIPRSYG-SFLSLKFLSLSGNDLRGRIPNELANITTLVQLYLGYYNDYRGGIPADFG 244
Query: 128 RSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISE 187
R L+ LD++N L G IP+ +GN L++L + N L G++P + N+ SL+ L++S
Sbjct: 245 RLINLVHLDLANCSLKGSIPAELGNLKNLEVLFLQTNELTGSVPRELGNMTSLKTLDLSN 304
Query: 188 NNLSGSMISTLNLSSVEHLYLQN---NALGGSIPNTFFRGSALETLDL-----------R 233
N L G + L LS ++ L L N N L G IP L+ L L +
Sbjct: 305 NFLEGEI--PLELSGLQKLQLFNLFFNRLHGEIPEFVSELPDLQILKLWHNNFTGKIPSK 362
Query: 234 INEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACI----------- 282
+ + NL + L N L G IP LC R+L I+ + +N L G +P +
Sbjct: 363 LGSNGNLIEIDLSTNKLTGLIPESLCFGRRLKILILFNNFLFGPLPEDLGQCEPLWRFRL 422
Query: 283 -TNMLFSRVENGYLYGFDIVLRMYLDDAYVSN----------YYNSTVELLLDGN--DGR 329
N L S++ G +Y ++ L + L + +++ ++S ++ L N G
Sbjct: 423 GQNFLTSKLPKGLIYLPNLSL-LELQNNFLTGEIPEEEAGNAQFSSLTQINLSNNRLSGP 481
Query: 330 MLGAL-----VAVNFMTKNRYE-SYKGDI--LELMAGLDLSNNELTGDIPSEIGDLQNIH 381
+ G++ + + + NR G+I L+ + +D+S N +G P E GD ++
Sbjct: 482 IPGSIRNLRSLQILLLGANRLSGQIPGEIGSLKSLLKIDMSRNNFSGKFPPEFGDCMSLT 541
Query: 382 GLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGP 441
L+LSHN +SG IP S ++++ L++S N N +P +L + SL++ D S+NN SG
Sbjct: 542 YLDLSHNQISGQIPVQISQIRILNYLNVSWNSFNQSLPNELGYMKSLTSADFSHNNFSGS 601
Query: 442 IPDKEQFSTFDESSYRGNLFLCG 464
+P QFS F+ +S+ GN FLCG
Sbjct: 602 VPTSGQFSYFNNTSFLGNPFLCG 624
|
Necessary for male gametophyte development, as well as ovule specification and function. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 194 bits (492), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 164/543 (30%), Positives = 255/543 (46%), Gaps = 91/543 (16%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
L L +++N SG LP+ + L + +S+ G IP+ I Q L+LLD+S+N
Sbjct: 314 LEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTL 373
Query: 70 AGELSQSL-----------------------VINCFSLEWLDLSNNNFVGQIFPNYMNLT 106
G++ SL + N +L+ L +NN G++ L
Sbjct: 374 TGQIPDSLFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIGFLG 433
Query: 107 RLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLL 166
+L +YLY N FSG++ + T L +D NRLSG IPS +G L L + +N L
Sbjct: 434 KLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENEL 493
Query: 167 EGNIPVQFNNLASLQILNISENNLSGSMISTLN-LSSVEHLYLQNNALGGSIPNTF---- 221
GNIP N + ++++++N LSGS+ S+ L+++E + NN+L G++P++
Sbjct: 494 VGNIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDSLINLK 553
Query: 222 -----------FRGSALE-------------------TLDLRINEHSNLRTLLLRGNYLQ 251
F GS + L + + +NL L L N
Sbjct: 554 NLTRINFSSNKFNGSISPLCGSSSYLSFDVTENGFEGDIPLELGKSTNLDRLRLGKNQFT 613
Query: 252 GPIPHQLCHLRKLGIMDISHNRLNGSIP---ACITNMLFSRVENGYLYGFDIV----LRM 304
G IP + +L ++DIS N L+G IP + + N YL G L +
Sbjct: 614 GRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLPL 673
Query: 305 YLDDAYVSNYY-----------NSTVELLLDGND-----GRMLGALVAVNFMTKNRYE-- 346
+ SN + + + L LDGN + +G L A+N + +
Sbjct: 674 LGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLS 733
Query: 347 ----SYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIH-GLNLSHNFLSGSIPESFSNL 401
S G + +L L LS N LTG+IP EIG LQ++ L+LS+N +G IP + S L
Sbjct: 734 GPLPSTIGKLSKLFE-LRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTL 792
Query: 402 KMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLF 461
+ESLDLSHN+L G++P Q+ ++ SL ++SYNNL G + K+QFS + ++ GN
Sbjct: 793 PKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKL--KKQFSRWQADAFVGNAG 850
Query: 462 LCG 464
LCG
Sbjct: 851 LCG 853
|
Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 193 bits (490), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 160/520 (30%), Positives = 243/520 (46%), Gaps = 104/520 (20%)
Query: 10 LHSLDISRNSFSGKLPQNMGIV-----------------------LPKLVYMNISKNSFE 46
L S+D+ N SG++P +G L +L + + N
Sbjct: 94 LLSIDLRGNRLSGQIPDEIGDCSSLQNLDLSFNELSGDIPFSISKLKQLEQLILKNNQLI 153
Query: 47 GNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLT 106
G IPS++ ++ L++LD++ N +GE+ + + N L++L L NN VG I P+ LT
Sbjct: 154 GPIPSTLSQIPNLKILDLAQNKLSGEIPRLIYWNEV-LQYLGLRGNNLVGNISPDLCQLT 212
Query: 107 RLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLL 166
LW + NN+ +G I + + T VLD+S N+L+G IP +G F + LS+ N L
Sbjct: 213 GLWYFDVRNNSLTGSIPETIGNCTAFQVLDLSYNQLTGEIPFDIG-FLQVATLSLQGNQL 271
Query: 167 EGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGS 225
G IP + +L +L++S N LSGS+ L NL+ E LYL +N L GSIP S
Sbjct: 272 SGKIPSVIGLMQALAVLDLSGNLLSGSIPPILGNLTFTEKLYLHSNKLTGSIPPELGNMS 331
Query: 226 ALETLDLRIN-----------EHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRL 274
L L+L N + ++L L + N L+GPIP L L +++ N+
Sbjct: 332 KLHYLELNDNHLTGHIPPELGKLTDLFDLNVANNDLEGPIPDHLSSCTNLNSLNVHGNKF 391
Query: 275 NGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGAL 334
+G+IP F ++E+ YL+ + + VEL GN
Sbjct: 392 SGTIPRA-----FQKLES----------MTYLNLSSNNIKGPIPVELSRIGN-------- 428
Query: 335 VAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSI 394
+ LDLSNN++ G IPS +GDL+++ +NLS N ++G +
Sbjct: 429 ---------------------LDTLDLSNNKINGIIPSSLGDLEHLLKMNLSRNHITGVV 467
Query: 395 PESFSNLKMIESLDLSHNKLNGQIPPQLTELH-----------------------SLSTF 431
P F NL+ I +DLS+N ++G IP +L +L SL+
Sbjct: 468 PGDFGNLRSIMEIDLSNNDISGPIPEELNQLQNIILLRLENNNLTGNVGSLANCLSLTVL 527
Query: 432 DVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGPAINKGC 471
+VS+NNL G IP FS F S+ GN LCG +N C
Sbjct: 528 NVSHNNLVGDIPKNNNFSRFSPDSFIGNPGLCGSWLNSPC 567
|
Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 192 bits (488), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 163/510 (31%), Positives = 233/510 (45%), Gaps = 54/510 (10%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
L SLD+S N +G +P +G L + +S N+F G IP S+ L+ LD+S+NN
Sbjct: 254 LQSLDLSHNRLTGWIPPEIGDTCRSLQNLRLSYNNFTGVIPESLSSCSWLQSLDLSNNNI 313
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNN-FSGKIKDGLLR 128
+G +++ + SL+ L LSNN G FP ++ + + +++N FSG I L
Sbjct: 314 SGPFPNTILRSFGSLQILLLSNNLISGD-FPTSISACKSLRIADFSSNRFSGVIPPDLCP 372
Query: 129 -STELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISE 187
+ L L + +N ++G IP + S L+ + +S N L G IP + NL L+
Sbjct: 373 GAASLEELRLPDNLVTGEIPPAISQCSELRTIDLSLNYLNGTIPPEIGNLQKLEQFIAWY 432
Query: 188 NNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEH--------- 237
NN++G + + L +++ L L NN L G IP FF S +E + N
Sbjct: 433 NNIAGEIPPEIGKLQNLKDLILNNNQLTGEIPPEFFNCSNIEWVSFTSNRLTGEVPKDFG 492
Query: 238 --SNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYL 295
S L L L N G IP +L L +D++ N L G IP + S+ +G L
Sbjct: 493 ILSRLAVLQLGNNNFTGEIPPELGKCTTLVWLDLNTNHLTGEIPPRLGRQPGSKALSGLL 552
Query: 296 YGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNR----------- 344
G + A+V N GN + +G LV + + R
Sbjct: 553 SGNTM--------AFVRNV----------GNSCKGVGGLVEFSGIRPERLLQIPSLKSCD 594
Query: 345 -YESYKGDILELMAG------LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPES 397
Y G IL L LDLS N+L G IP EIG++ + L LSHN LSG IP +
Sbjct: 595 FTRMYSGPILSLFTRYQTIEYLDLSYNQLRGKIPDEIGEMIALQVLELSHNQLSGEIPFT 654
Query: 398 FSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYR 457
LK + D S N+L GQIP + L L D+S N L+GPIP + Q ST + Y
Sbjct: 655 IGQLKNLGVFDASDNRLQGQIPESFSNLSFLVQIDLSNNELTGPIPQRGQLSTLPATQYA 714
Query: 458 GNLFLCG---PAINKGCTNLPELLEPSSKG 484
N LCG P G LP E +
Sbjct: 715 NNPGLCGVPLPECKNGNNQLPAGTEEGKRA 744
|
Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 191 bits (486), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 168/490 (34%), Positives = 241/490 (49%), Gaps = 42/490 (8%)
Query: 2 QLTSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIP-SSIGKMQGLR 60
QL + LD+S N+FSG +P+++G L ++IS N+F G +P ++ K+ ++
Sbjct: 322 QLADLCKTVVELDLSYNNFSGMVPESLGEC-SSLELVDISYNNFSGKLPVDTLSKLSNIK 380
Query: 61 LLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMN--LTRLWALYLYNNNF 118
+ +S N F G L S N LE LD+S+NN G I + L LYL NN F
Sbjct: 381 TMVLSFNKFVGGLPDSFS-NLLKLETLDMSSNNLTGVIPSGICKDPMNNLKVLYLQNNLF 439
Query: 119 SGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLA 178
G I D L ++L+ LD+S N L+G IPS +G+ S L+ L + N L G IP + L
Sbjct: 440 KGPIPDSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWLNQLSGEIPQELMYLQ 499
Query: 179 SLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEH 237
+L+ L + N+L+G + ++L N + + + L NN L G IP + R
Sbjct: 500 ALENLILDFNDLTGPIPASLSNCTKLNWISLSNNQLSGEIPASLGR-------------L 546
Query: 238 SNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYG 297
SNL L L N + G IP +L + + L +D++ N LNGSIP LF + N
Sbjct: 547 SNLAILKLGNNSISGNIPAELGNCQSLIWLDLNTNFLNGSIPP----PLFKQSGN----- 597
Query: 298 FDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYES-----YKGDI 352
I + + YV + + E GN G R+ Y+G
Sbjct: 598 --IAVALLTGKRYVYIKNDGSKECHGAGNLLEFGGIRQEQLDRISTRHPCNFTRVYRGIT 655
Query: 353 LEL------MAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIES 406
M LDLS N+L G IP E+G + + LNL HN LSG IP+ LK +
Sbjct: 656 QPTFNHNGSMIFLDLSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMIPQQLGGLKNVAI 715
Query: 407 LDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGPA 466
LDLS+N+ NG IP LT L L D+S NNLSG IP+ F TF + + N LCG
Sbjct: 716 LDLSYNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMIPESAPFDTFPDYRFANN-SLCGYP 774
Query: 467 INKGCTNLPE 476
+ C++ P+
Sbjct: 775 LPIPCSSGPK 784
|
Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. Solanum lycopersicum (taxid: 4081) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1 | Back alignment and function description |
|---|
Score = 191 bits (485), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 164/505 (32%), Positives = 242/505 (47%), Gaps = 63/505 (12%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
L L + N F G P + + +V +++S N+F G +P S+G+ L L+D+S+NNF
Sbjct: 305 LQYLYLRGNDFQGVYPNQLADLCKTVVELDLSYNNFSGMVPESLGECSSLELVDISNNNF 364
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWAL------------------ 111
+G+L ++ +++ + LS N FVG + ++ NL +L L
Sbjct: 365 SGKLPVDTLLKLSNIKTMVLSFNKFVGGLPDSFSNLPKLETLDMSSNNLTGIIPSGICKD 424
Query: 112 --------YLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSK 163
YL NN F G I D L ++L+ LD+S N L+G IPS +G+ S L+ L +
Sbjct: 425 PMNNLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSKLKDLILWL 484
Query: 164 NLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFF 222
N L G IP + L +L+ L + N+L+G + ++L N + + + L NN L G IP +
Sbjct: 485 NQLSGEIPQELMYLQALENLILDFNDLTGPIPASLSNCTKLNWISLSNNQLSGEIPASLG 544
Query: 223 RGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACI 282
R SNL L L N + G IP +L + + L +D++ N LNGSIP
Sbjct: 545 R-------------LSNLAILKLGNNSISGNIPAELGNCQSLIWLDLNTNFLNGSIPP-- 589
Query: 283 TNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTK 342
LF + N I + + YV + + E GN G
Sbjct: 590 --PLFKQSGN-------IAVALLTGKRYVYIKNDGSKECHGAGNLLEFGGIRQEQLDRIS 640
Query: 343 NRYES-----YKGDILEL------MAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLS 391
R+ Y+G M LDLS N+L G IP E+G + + LNL HN LS
Sbjct: 641 TRHPCNFTRVYRGITQPTFNHNGSMIFLDLSYNKLEGSIPKELGAMYYLSILNLGHNDLS 700
Query: 392 GSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTF 451
G IP+ LK + LDLS+N+ NG IP LT L L D+S NNLSG IP+ F TF
Sbjct: 701 GMIPQQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMIPESAPFDTF 760
Query: 452 DESSYRGNLFLCGPAINKGCTNLPE 476
+ + N LCG + C++ P+
Sbjct: 761 PDYRFANN-SLCGYPLPLPCSSGPK 784
|
Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development. Solanum peruvianum (taxid: 4082) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 558 | ||||||
| 357468861 | 1016 | Receptor-like protein kinase [Medicago t | 0.921 | 0.505 | 0.489 | 1e-126 | |
| 358345693 | 1011 | Receptor-like protein kinase [Medicago t | 0.921 | 0.508 | 0.489 | 1e-126 | |
| 358345471 | 933 | Receptor kinase [Medicago truncatula] gi | 0.964 | 0.576 | 0.470 | 1e-123 | |
| 358345705 | 703 | Receptor protein kinase-like protein [Me | 0.888 | 0.705 | 0.482 | 1e-122 | |
| 357468869 | 703 | Receptor protein kinase-like protein [Me | 0.888 | 0.705 | 0.482 | 1e-122 | |
| 240254032 | 1034 | receptor like protein 1 [Arabidopsis tha | 0.960 | 0.518 | 0.434 | 1e-118 | |
| 238478392 | 913 | receptor like protein 1 [Arabidopsis tha | 0.960 | 0.587 | 0.434 | 1e-118 | |
| 238478394 | 1083 | receptor like protein 1 [Arabidopsis tha | 0.960 | 0.494 | 0.434 | 1e-118 | |
| 359483099 | 1231 | PREDICTED: probable LRR receptor-like se | 0.930 | 0.421 | 0.450 | 1e-117 | |
| 359482749 | 1067 | PREDICTED: leucine-rich repeat receptor | 0.939 | 0.491 | 0.453 | 1e-117 |
| >gi|357468861|ref|XP_003604715.1| Receptor-like protein kinase [Medicago truncatula] gi|355505770|gb|AES86912.1| Receptor-like protein kinase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 261/533 (48%), Positives = 351/533 (65%), Gaps = 19/533 (3%)
Query: 13 LDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGE 72
LDIS N+ SG LP+++GI LP + Y+N S NSFEGNIPSSIGKM+ L+LLD S N+F+GE
Sbjct: 432 LDISNNNLSGLLPKDIGIFLPNVTYLNFSWNSFEGNIPSSIGKMKQLQLLDFSQNHFSGE 491
Query: 73 LSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTEL 132
L + L C +L++L LSNN G I P + N ++ L+L NNNFSG ++D L +T L
Sbjct: 492 LPKQLATGCDNLQYLKLSNNFLHGNI-PRFCNSVNMFGLFLNNNNFSGTLEDVLGNNTRL 550
Query: 133 MVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSG 192
L ISNN SG IPS +G FS + L MSKN LEG IP++ +++ LQIL++S+N L+G
Sbjct: 551 ETLSISNNSFSGTIPSSIGMFSNMWALLMSKNQLEGEIPIEISSIWRLQILDLSQNKLNG 610
Query: 193 SMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLR-----------INEHSNLR 241
S+ L+ + LYLQ N L GSIP + G L+ LDLR +++ S LR
Sbjct: 611 SIPPLSGLTLLRFLYLQENGLSGSIPYELYEGFQLQLLDLRENKFSGKIPNWMDKFSELR 670
Query: 242 TLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYG-FDI 300
LLL GN +G IP QLC L+K+ IMD+S N LN SIP+C NMLF + Y+ FD+
Sbjct: 671 VLLLGGNNFEGEIPMQLCRLKKINIMDLSRNMLNASIPSCFRNMLFGMRQ--YVDAVFDL 728
Query: 301 VLRMYLDDAYVSNYY-NSTVELLLDGNDGRMLGALV--AVNFMTKNRYESYKGDILELMA 357
+Y ++Y+ +S++ + L +++ L+ V F TK+ YKG +LE M
Sbjct: 729 SSILYGQHIQDTHYFFDSSLSIDLPLEKDQLIEDLLHLEVEFRTKHYEYFYKGKVLENMT 788
Query: 358 GLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 417
GLDLS N+LTG IPS+IGDLQ I LNLSHN LSG IP +FSNL IESLDLS+N L+G+
Sbjct: 789 GLDLSCNKLTGVIPSQIGDLQQIRALNLSHNHLSGPIPITFSNLTQIESLDLSYNDLSGK 848
Query: 418 IPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGPAINKGCTNL-PE 476
IP +LT+L+ LSTF+VSYNNLSG P QF+ FDE +YRGN LCGP +++ C + P
Sbjct: 849 IPNELTQLNFLSTFNVSYNNLSGTPPSIGQFANFDEDNYRGNPSLCGPLLSRKCERVEPP 908
Query: 477 LLEPSSKGAEDESEVDLVAFYWSFVASCVTVMLGLLAILWVNPYWRRLWFYFI 529
S+ E+E+ VD++ FYWSF AS +T++L + +L +NP WR WFY+I
Sbjct: 909 PSSQSNDNEEEETGVDMITFYWSFTASYITILLAFITVLCINPRWRMAWFYYI 961
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358345693|ref|XP_003636910.1| Receptor-like protein kinase [Medicago truncatula] gi|355502845|gb|AES84048.1| Receptor-like protein kinase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 261/533 (48%), Positives = 351/533 (65%), Gaps = 19/533 (3%)
Query: 13 LDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGE 72
LDIS N+ SG LP+++GI LP + Y+N S NSFEGNIPSSIGKM+ L+LLD S N+F+GE
Sbjct: 432 LDISNNNLSGLLPKDIGIFLPNVTYLNFSWNSFEGNIPSSIGKMKQLQLLDFSQNHFSGE 491
Query: 73 LSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTEL 132
L + L C +L++L LSNN G I P + N ++ L+L NNNFSG ++D L +T L
Sbjct: 492 LPKQLATGCDNLQYLKLSNNFLHGNI-PRFCNSVNMFGLFLNNNNFSGTLEDVLGNNTRL 550
Query: 133 MVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSG 192
L ISNN SG IPS +G FS + L MSKN LEG IP++ +++ LQIL++S+N L+G
Sbjct: 551 ETLSISNNSFSGTIPSSIGMFSNMWALLMSKNQLEGEIPIEISSIWRLQILDLSQNKLNG 610
Query: 193 SMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLR-----------INEHSNLR 241
S+ L+ + LYLQ N L GSIP + G L+ LDLR +++ S LR
Sbjct: 611 SIPPLSGLTLLRFLYLQENGLSGSIPYELYEGFQLQLLDLRENKFSGKIPNWMDKFSELR 670
Query: 242 TLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYG-FDI 300
LLL GN +G IP QLC L+K+ IMD+S N LN SIP+C NMLF + Y+ FD+
Sbjct: 671 VLLLGGNNFEGEIPMQLCRLKKINIMDLSRNMLNASIPSCFRNMLFGMRQ--YVDAVFDL 728
Query: 301 VLRMYLDDAYVSNYY-NSTVELLLDGNDGRMLGALV--AVNFMTKNRYESYKGDILELMA 357
+Y ++Y+ +S++ + L +++ L+ V F TK+ YKG +LE M
Sbjct: 729 SSILYGQHIQDTHYFFDSSLSIDLPLEKDQLIEDLLHLEVEFRTKHYEYFYKGKVLENMT 788
Query: 358 GLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 417
GLDLS N+LTG IPS+IGDLQ I LNLSHN LSG IP +FSNL IESLDLS+N L+G+
Sbjct: 789 GLDLSCNKLTGVIPSQIGDLQQIRALNLSHNHLSGPIPITFSNLTQIESLDLSYNDLSGK 848
Query: 418 IPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGPAINKGCTNL-PE 476
IP +LT+L+ LSTF+VSYNNLSG P QF+ FDE +YRGN LCGP +++ C + P
Sbjct: 849 IPNELTQLNFLSTFNVSYNNLSGTPPSIGQFANFDEDNYRGNPSLCGPLLSRKCERVEPP 908
Query: 477 LLEPSSKGAEDESEVDLVAFYWSFVASCVTVMLGLLAILWVNPYWRRLWFYFI 529
S+ E+E+ VD++ FYWSF AS +T++L + +L +NP WR WFY+I
Sbjct: 909 PSSQSNDNEEEETGVDMITFYWSFTASYITILLAFITVLCINPRWRMAWFYYI 961
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358345471|ref|XP_003636801.1| Receptor kinase [Medicago truncatula] gi|355502736|gb|AES83939.1| Receptor kinase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 273/580 (47%), Positives = 363/580 (62%), Gaps = 42/580 (7%)
Query: 2 QLTSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRL 61
+L + +HGL L IS N G+L +++G + P L Y+N+SKNSFEG +PSSIG+MQ +R
Sbjct: 353 ELPTFKHGLLDLQISNNKIGGQLQEDIGKIFPNLYYVNLSKNSFEGILPSSIGEMQTIRT 412
Query: 62 LDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGK 121
LD+S+NNF+GELS L+ N SL L LS+N+F G + P NLTRL LYL NN+FSG
Sbjct: 413 LDLSNNNFSGELSSHLISNLTSLRLLRLSHNSFHGLV-PLLSNLTRLNWLYLNNNSFSGV 471
Query: 122 IKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQ 181
I+DG+ ++ L LDISNN LSG IP W+G F+ L +LS+SKN L+G IP + NL SL
Sbjct: 472 IEDGVSNNSSLFSLDISNNMLSGRIPRWIGRFTKLSVLSLSKNRLQGEIPNELCNLISLS 531
Query: 182 ILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLR------- 233
L++SENNLS + N ++ LYLQ NAL G+IP F + + L +LDLR
Sbjct: 532 YLDLSENNLSDFLPYCFKNFKYMKFLYLQKNALQGNIPYAFSQLTKLTSLDLRDNNFFGN 591
Query: 234 ----INEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSR 289
IN S LR LLL GN L GPIP +C L + IMD+SHN +N +IP CI N+ F
Sbjct: 592 IPQWINRLSKLRVLLLAGNKLTGPIPIYVCELEHVRIMDLSHNWINETIPPCIKNISFKM 651
Query: 290 VE-------------------NGYLYGFDIVLRMYL-DDAYVSN------YYNSTVELLL 323
VE YG ++L DD + + +YNS++ L
Sbjct: 652 VEFQTTAVGGRAVQNDNDSKDKIQYYGNTATSYIFLVDDIWFTPGNTFDIFYNSSLSLNH 711
Query: 324 DGNDGRMLG-ALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHG 382
D M+ +V + F TK+ Y SYKG+ L LM GLDLS+N L+G IP EIG+L++I
Sbjct: 712 PIADEYMISYEIVEIEFRTKSYYLSYKGNNLNLMTGLDLSSNNLSGSIPPEIGELRDIKA 771
Query: 383 LNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPI 442
LNLSHN SGSIP +F NL IESLDLS+N L+G +P LT L+SL+ F+VSYN SG +
Sbjct: 772 LNLSHNRFSGSIPGTFPNLINIESLDLSYNNLSGALPQNLTNLYSLAIFNVSYNKFSGRV 831
Query: 443 PDKEQFSTFDESSYRGNLFLCGPAINKGCTNLPELLEPSSKGAEDESEVDLVAFYWSFVA 502
P QF+ FDE++YRGN LCG IN C N + P+S + ++ +D+ +FYWS VA
Sbjct: 832 PTTMQFANFDENNYRGNSDLCGSVINITC-NHTSIFPPAST-TQHQTAIDMESFYWSCVA 889
Query: 503 SCVTVMLGLLAILWVNPYWRRLWFYFIEDCIDLCYYWLFK 542
S VTV++GL ILWVN +W R+WF +++ CI C+ FK
Sbjct: 890 SYVTVVIGLAVILWVNSHWCRVWFRYVDLCIFYCFSRCFK 929
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358345705|ref|XP_003636916.1| Receptor protein kinase-like protein [Medicago truncatula] gi|355502851|gb|AES84054.1| Receptor protein kinase-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 264/547 (48%), Positives = 343/547 (62%), Gaps = 51/547 (9%)
Query: 13 LDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGE 72
LDIS NS SG LP+++GI LP + YMN S N+FEGNIPSSIGKM+ L LD+S N+F+GE
Sbjct: 164 LDISINSLSGFLPKDIGIFLPSVTYMNFSSNNFEGNIPSSIGKMKKLESLDLSHNHFSGE 223
Query: 73 LSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTEL 132
L + L C +L++L LSNN G I P + N + L+L NNNFSG ++D L +T L
Sbjct: 224 LPKQLATGCDNLQYLKLSNNFLHGNI-PKFYNSMNVEFLFLNNNNFSGTLEDVLGNNTGL 282
Query: 133 MVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSG 192
+ L ISNN SG IPS +G FS + +L MS+N+LEG IP++ +N++SL+IL++S+N L G
Sbjct: 283 VFLSISNNSFSGTIPSSIGTFSYIWVLLMSQNILEGEIPIEISNMSSLKILDLSQNKLIG 342
Query: 193 SMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHS-----------NLR 241
S+ L+ + LYLQ N L GSIP+ GS L+ LDLR N+ S LR
Sbjct: 343 SIPKLSGLTVLRFLYLQKNNLSGSIPSELSEGSQLQLLDLRENKFSGKIPHWMDKLSELR 402
Query: 242 TLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIV 301
LLL GN L+G IP QLC L+K+ IMD+S N LN SIP+C NM F
Sbjct: 403 VLLLGGNKLEGDIPIQLCRLKKINIMDLSRNMLNASIPSCFRNMSFG------------- 449
Query: 302 LRMYLDDA-------YVSNY-----YNSTVELL----LDGNDGRMLGALVAVNFMTKNRY 345
+R Y+DD +S Y +N+++ + L D + V F TK+
Sbjct: 450 MRQYVDDDDGPTFEFSISGYLPTISFNASLSIQPPWSLFNEDLQF-----EVEFRTKHYE 504
Query: 346 ESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIE 405
YKG +LE M GLDLS N LTG IPS+IG LQ + LNLSHN LSG IP +FSNL IE
Sbjct: 505 YFYKGKVLENMTGLDLSWNNLTGLIPSQIGHLQQVRALNLSHNHLSGPIPITFSNLTQIE 564
Query: 406 SLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGP 465
SLDLS+N L+G+IP +LT+L+ LSTF+VSYNN SG P QF FDE SYRGN LCGP
Sbjct: 565 SLDLSYNNLSGKIPNELTQLNFLSTFNVSYNNFSGTPPSTGQFGGFDEDSYRGNPGLCGP 624
Query: 466 AINKGCTNLPELLEPSSKG---AEDESEVDLVAFYWSFVASCVTVMLGLLAILWVNPYWR 522
+ + C + PSS+ E E+ VD++ FYWSF AS +T++L + +L VNP WR
Sbjct: 625 LLYQKCERVES--SPSSQSNDNGEKETMVDMITFYWSFTASYITILLAFITVLCVNPRWR 682
Query: 523 RLWFYFI 529
WFY+I
Sbjct: 683 MAWFYYI 689
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357468869|ref|XP_003604719.1| Receptor protein kinase-like protein [Medicago truncatula] gi|355505774|gb|AES86916.1| Receptor protein kinase-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 264/547 (48%), Positives = 343/547 (62%), Gaps = 51/547 (9%)
Query: 13 LDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGE 72
LDIS NS SG LP+++GI LP + YMN S N+FEGNIPSSIGKM+ L LD+S N+F+GE
Sbjct: 164 LDISINSLSGFLPKDIGIFLPSVTYMNFSSNNFEGNIPSSIGKMKKLESLDLSHNHFSGE 223
Query: 73 LSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTEL 132
L + L C +L++L LSNN G I P + N + L+L NNNFSG ++D L +T L
Sbjct: 224 LPKQLATGCDNLQYLKLSNNFLHGNI-PKFYNSMNVEFLFLNNNNFSGTLEDVLGNNTGL 282
Query: 133 MVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSG 192
+ L ISNN SG IPS +G FS + +L MS+N+LEG IP++ +N++SL+IL++S+N L G
Sbjct: 283 VFLSISNNSFSGTIPSSIGTFSYIWVLLMSQNILEGEIPIEISNMSSLKILDLSQNKLIG 342
Query: 193 SMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHS-----------NLR 241
S+ L+ + LYLQ N L GSIP+ GS L+ LDLR N+ S LR
Sbjct: 343 SIPKLSGLTVLRFLYLQKNNLSGSIPSELSEGSQLQLLDLRENKFSGKIPHWMDKLSELR 402
Query: 242 TLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIV 301
LLL GN L+G IP QLC L+K+ IMD+S N LN SIP+C NM F
Sbjct: 403 VLLLGGNKLEGDIPIQLCRLKKIDIMDLSRNMLNASIPSCFRNMSFG------------- 449
Query: 302 LRMYLDDA-------YVSNY-----YNSTVELL----LDGNDGRMLGALVAVNFMTKNRY 345
+R Y+DD +S Y +N+++ + L D + V F TK+
Sbjct: 450 MRQYVDDDDGPTFEFSISGYLPTISFNASLSIQPPWSLFNEDLQF-----EVEFRTKHYE 504
Query: 346 ESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIE 405
YKG +LE M GLDLS N LTG IPS+IG LQ + LNLSHN LSG IP +FSNL IE
Sbjct: 505 YFYKGKVLENMTGLDLSWNNLTGLIPSQIGHLQQVRALNLSHNHLSGPIPITFSNLTQIE 564
Query: 406 SLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGP 465
SLDLS+N L+G+IP +LT+L+ LSTF+VSYNN SG P QF FDE SYRGN LCGP
Sbjct: 565 SLDLSYNNLSGKIPNELTQLNFLSTFNVSYNNFSGTPPSTGQFGGFDEDSYRGNPGLCGP 624
Query: 466 AINKGCTNLPELLEPSSKG---AEDESEVDLVAFYWSFVASCVTVMLGLLAILWVNPYWR 522
+ + C + PSS+ E E+ VD++ FYWSF AS +T++L + +L VNP WR
Sbjct: 625 LLYQKCERVES--SPSSQSNDNGEKETMVDMITFYWSFTASYITILLAFITVLCVNPRWR 682
Query: 523 RLWFYFI 529
WFY+I
Sbjct: 683 MAWFYYI 689
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240254032|ref|NP_172219.5| receptor like protein 1 [Arabidopsis thaliana] gi|332189996|gb|AEE28117.1| receptor like protein 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 248/571 (43%), Positives = 339/571 (59%), Gaps = 35/571 (6%)
Query: 1 FQLTSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLR 60
QL HGL LDIS N + +++G+V P L +MN S N F+G IPSSIG+M+ L+
Sbjct: 472 LQLPILVHGLQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEMKSLQ 531
Query: 61 LLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSG 120
+LD+SSN G+L + C+SL L LSNN G+IF + NLT L L+L NNF+G
Sbjct: 532 VLDMSSNGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGNNFTG 591
Query: 121 KIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASL 180
+++GLL+S L +LDIS+NR SG +P W+G S L L MS N L+G P +
Sbjct: 592 SLEEGLLKSKNLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFPF-LRQSPWV 650
Query: 181 QILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLR------- 233
++++IS N+ SGS+ +N S+ L LQNN G +P F+ + LE LDLR
Sbjct: 651 EVMDISHNSFSGSIPRNVNFPSLRELRLQNNEFTGLVPGNLFKAAGLEVLDLRNNNFSGK 710
Query: 234 ----INEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSR 289
I++ S LR LLLR N Q IP ++C L ++G++D+SHN+ G IP+C + M F
Sbjct: 711 ILNTIDQTSKLRILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPSCFSKMSFGA 770
Query: 290 VEN----GYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDG-NDGRMLGALVAVNFMTKNR 344
+N + FD +L ++ N L DG +G V+F+TK+R
Sbjct: 771 EQNDRTMSLVADFDFSYITFLPHCQYGSHLN-----LDDGVRNGYQPKPATVVDFLTKSR 825
Query: 345 YESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMI 404
YE+Y+GDIL M GLDLS+NEL+G+IP EIGDLQNI LNLS N L+GSIP+S S LK +
Sbjct: 826 YEAYQGDILRYMHGLDLSSNELSGEIPIEIGDLQNIRSLNLSSNRLTGSIPDSISKLKGL 885
Query: 405 ESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCG 464
ESLDLS+NKL+G IPP L +L+SL ++SYNNLSG IP K TFDE SY GN LCG
Sbjct: 886 ESLDLSNNKLDGSIPPALADLNSLGYLNISYNNLSGEIPFKGHLVTFDERSYIGNAHLCG 945
Query: 465 PAINKGCTNLPELLEPSSKGAEDESE--------VDLVAFYWSFVASCVTVMLGLLAILW 516
NK C + + EP S + E +D+V FYW+ A ++ L L A L+
Sbjct: 946 LPTNKNCIS-QRVPEPPSVSTHAKEEENEEEGNVIDMVWFYWTCAAVYISTSLALFAFLY 1004
Query: 517 VNPYWRRLWFYFIEDCIDLCYYWLFKYKLDS 547
++ W R WFY +DLC + + ++K S
Sbjct: 1005 IDSRWSREWFYR----VDLCVHHILQFKRSS 1031
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|238478392|ref|NP_001154317.1| receptor like protein 1 [Arabidopsis thaliana] gi|332189997|gb|AEE28118.1| receptor like protein 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 248/571 (43%), Positives = 339/571 (59%), Gaps = 35/571 (6%)
Query: 1 FQLTSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLR 60
QL HGL LDIS N + +++G+V P L +MN S N F+G IPSSIG+M+ L+
Sbjct: 351 LQLPILVHGLQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEMKSLQ 410
Query: 61 LLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSG 120
+LD+SSN G+L + C+SL L LSNN G+IF + NLT L L+L NNF+G
Sbjct: 411 VLDMSSNGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGNNFTG 470
Query: 121 KIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASL 180
+++GLL+S L +LDIS+NR SG +P W+G S L L MS N L+G P +
Sbjct: 471 SLEEGLLKSKNLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFPF-LRQSPWV 529
Query: 181 QILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLR------- 233
++++IS N+ SGS+ +N S+ L LQNN G +P F+ + LE LDLR
Sbjct: 530 EVMDISHNSFSGSIPRNVNFPSLRELRLQNNEFTGLVPGNLFKAAGLEVLDLRNNNFSGK 589
Query: 234 ----INEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSR 289
I++ S LR LLLR N Q IP ++C L ++G++D+SHN+ G IP+C + M F
Sbjct: 590 ILNTIDQTSKLRILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPSCFSKMSFGA 649
Query: 290 VEN----GYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDG-NDGRMLGALVAVNFMTKNR 344
+N + FD +L ++ N L DG +G V+F+TK+R
Sbjct: 650 EQNDRTMSLVADFDFSYITFLPHCQYGSHLN-----LDDGVRNGYQPKPATVVDFLTKSR 704
Query: 345 YESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMI 404
YE+Y+GDIL M GLDLS+NEL+G+IP EIGDLQNI LNLS N L+GSIP+S S LK +
Sbjct: 705 YEAYQGDILRYMHGLDLSSNELSGEIPIEIGDLQNIRSLNLSSNRLTGSIPDSISKLKGL 764
Query: 405 ESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCG 464
ESLDLS+NKL+G IPP L +L+SL ++SYNNLSG IP K TFDE SY GN LCG
Sbjct: 765 ESLDLSNNKLDGSIPPALADLNSLGYLNISYNNLSGEIPFKGHLVTFDERSYIGNAHLCG 824
Query: 465 PAINKGCTNLPELLEPSSKGAEDESE--------VDLVAFYWSFVASCVTVMLGLLAILW 516
NK C + + EP S + E +D+V FYW+ A ++ L L A L+
Sbjct: 825 LPTNKNCIS-QRVPEPPSVSTHAKEEENEEEGNVIDMVWFYWTCAAVYISTSLALFAFLY 883
Query: 517 VNPYWRRLWFYFIEDCIDLCYYWLFKYKLDS 547
++ W R WFY +DLC + + ++K S
Sbjct: 884 IDSRWSREWFY----RVDLCVHHILQFKRSS 910
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|238478394|ref|NP_001154318.1| receptor like protein 1 [Arabidopsis thaliana] gi|332189998|gb|AEE28119.1| receptor like protein 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 248/571 (43%), Positives = 339/571 (59%), Gaps = 35/571 (6%)
Query: 1 FQLTSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLR 60
QL HGL LDIS N + +++G+V P L +MN S N F+G IPSSIG+M+ L+
Sbjct: 521 LQLPILVHGLQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEMKSLQ 580
Query: 61 LLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSG 120
+LD+SSN G+L + C+SL L LSNN G+IF + NLT L L+L NNF+G
Sbjct: 581 VLDMSSNGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGNNFTG 640
Query: 121 KIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASL 180
+++GLL+S L +LDIS+NR SG +P W+G S L L MS N L+G P +
Sbjct: 641 SLEEGLLKSKNLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFPF-LRQSPWV 699
Query: 181 QILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLR------- 233
++++IS N+ SGS+ +N S+ L LQNN G +P F+ + LE LDLR
Sbjct: 700 EVMDISHNSFSGSIPRNVNFPSLRELRLQNNEFTGLVPGNLFKAAGLEVLDLRNNNFSGK 759
Query: 234 ----INEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSR 289
I++ S LR LLLR N Q IP ++C L ++G++D+SHN+ G IP+C + M F
Sbjct: 760 ILNTIDQTSKLRILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPSCFSKMSFGA 819
Query: 290 VEN----GYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDG-NDGRMLGALVAVNFMTKNR 344
+N + FD +L ++ N L DG +G V+F+TK+R
Sbjct: 820 EQNDRTMSLVADFDFSYITFLPHCQYGSHLN-----LDDGVRNGYQPKPATVVDFLTKSR 874
Query: 345 YESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMI 404
YE+Y+GDIL M GLDLS+NEL+G+IP EIGDLQNI LNLS N L+GSIP+S S LK +
Sbjct: 875 YEAYQGDILRYMHGLDLSSNELSGEIPIEIGDLQNIRSLNLSSNRLTGSIPDSISKLKGL 934
Query: 405 ESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCG 464
ESLDLS+NKL+G IPP L +L+SL ++SYNNLSG IP K TFDE SY GN LCG
Sbjct: 935 ESLDLSNNKLDGSIPPALADLNSLGYLNISYNNLSGEIPFKGHLVTFDERSYIGNAHLCG 994
Query: 465 PAINKGCTNLPELLEPSSKGAEDESE--------VDLVAFYWSFVASCVTVMLGLLAILW 516
NK C + + EP S + E +D+V FYW+ A ++ L L A L+
Sbjct: 995 LPTNKNCIS-QRVPEPPSVSTHAKEEENEEEGNVIDMVWFYWTCAAVYISTSLALFAFLY 1053
Query: 517 VNPYWRRLWFYFIEDCIDLCYYWLFKYKLDS 547
++ W R WFY +DLC + + ++K S
Sbjct: 1054 IDSRWSREWFYR----VDLCVHHILQFKRSS 1080
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483099|ref|XP_002262931.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 244/542 (45%), Positives = 342/542 (63%), Gaps = 23/542 (4%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
+ SLDIS N G+L QN+ ++P + ++N+S N FEG +PSSI +M L LD+S+N+F
Sbjct: 493 ITSLDISDNRLVGELQQNVANMIPNIEHLNLSNNGFEGILPSSIAEMSSLWSLDLSANSF 552
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRS 129
+GE+ + L++ LE+L LSNN F G+IF NLT L L+L NN F G + + + RS
Sbjct: 553 SGEVPKQLLV-AKDLEFLKLSNNKFHGEIFSRDFNLTSLEFLHLDNNQFKGTLSNVISRS 611
Query: 130 TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENN 189
+ L VLD+SNN +SG IPSW+GN + L L + N +G +P + + L L+ L++S+N
Sbjct: 612 SWLRVLDVSNNNMSGEIPSWIGNMTDLTTLVLGNNSFKGKLPPEISQLQRLEFLDVSQNT 671
Query: 190 LSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLR-----------INEHS 238
LSGS+ S ++ ++HL+LQ N G IP F S L TLD+R I+
Sbjct: 672 LSGSLPSLKSIEYLKHLHLQGNMFTGLIPRDFLNSSNLLTLDIRDNRLFGSIPNSISRLL 731
Query: 239 NLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGF 298
LR LLRGN L G IP+QLCHL K+ +MD+S+N +GSIP C ++ F + +
Sbjct: 732 ELRIFLLRGNLLSGFIPNQLCHLTKISLMDLSNNNFSGSIPKCFGHIQFGDFKTEH---- 787
Query: 299 DIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAG 358
++ M+ ++ S Y V+ L + + V F+TKNR SY G IL+ M+G
Sbjct: 788 NVYKPMFNPYSFFSIYTGYLVKYLFFSTEAHR-DEVDEVEFVTKNRSNSYGGGILDFMSG 846
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
LDLS N LTG+IP E+G L +I LNLSHN L GS+P+SFS L IESLDLS+NKL+G+I
Sbjct: 847 LDLSCNNLTGEIPRELGMLSSILALNLSHNQLKGSVPKSFSKLSQIESLDLSYNKLSGEI 906
Query: 419 PPQLTELHSLSTFDVSYNNLSGPIPD-KEQFSTFDESSYRGNLFLCGPAINKGC-TNLPE 476
PP+ L+ L F+V++NN+SG +PD KEQF TF ESSY N FLCGP + + C T++
Sbjct: 907 PPEFIGLNFLEVFNVAHNNISGRVPDMKEQFGTFGESSYEDNPFLCGPMLKRKCNTSIES 966
Query: 477 LLEPSSKGAEDES---EVDLVAFYWSFVASCVTVMLGLLAILWVNPYWRRLWFYFIED-C 532
PS E E+ ++D V F+ SFVAS + ++LG AIL++NPYWR+ WF FIE+ C
Sbjct: 967 PNSPSQPSQESEAKWYDIDHVVFFASFVASYIMILLGFAAILYINPYWRQRWFNFIEEWC 1026
Query: 533 ID 534
I
Sbjct: 1027 IQ 1028
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482749|ref|XP_002262614.2| PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 248/547 (45%), Positives = 340/547 (62%), Gaps = 23/547 (4%)
Query: 12 SLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAG 71
SLDIS N G+L +N+G ++P +V++N+S N FEG +PSSI +M LR+LD+S+NNF+G
Sbjct: 515 SLDISHNQLDGRLQENVGHMIPNIVFLNLSNNGFEGLLPSSIAEMSSLRVLDLSANNFSG 574
Query: 72 ELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTE 131
E+ + L+ L L LS N F G+IF N+T L LYL NN F G + + + S++
Sbjct: 575 EVPKQLLATK-DLVILKLSYNKFHGEIFSRDFNMTGLDILYLDNNQFMGTLSNVISGSSQ 633
Query: 132 LMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLS 191
LMVLD+SNN +SG IPS +GN + L+ L M N G +P + + L ++ L++S+N LS
Sbjct: 634 LMVLDVSNNYMSGEIPSGIGNMTELRTLVMGNNNFRGKLPPEISQLQQMKFLDVSQNALS 693
Query: 192 GSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLR-----------INEHSNL 240
GS+ S ++ +EHL+LQ N G IP F S L TLD+R I+ L
Sbjct: 694 GSLPSLKSMEYLEHLHLQGNMFTGLIPRDFLNSSDLLTLDMRDNRLFGSIPNSISALLEL 753
Query: 241 RTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDI 300
R LLLRGN G IP+ LCHL K+ +MD+S+N +G IP C ++ F G + +
Sbjct: 754 RILLLRGNLFSGFIPNHLCHLTKISLMDLSNNSFSGPIPKCFGDIRF-----GEMKKEND 808
Query: 301 VLRMYLDDAYVSNYYNSTVELLLDG--NDGRMLGALVAVNFMTKNRYESYKGDILELMAG 358
V R ++D Y + N V + D + V F+TKNR++SY GDIL M G
Sbjct: 809 VFRQFIDFGYGGDSRNLYVGFTVKKWEFDSDVYDEKNEVEFVTKNRHDSYSGDILNFMFG 868
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
LDLS N LTG+IP ++G L IH LNLSHN L SIP+SFSNL IESLDLS+NKL+G+I
Sbjct: 869 LDLSCNNLTGEIPHKLGKLSWIHALNLSHNQLKDSIPKSFSNLSQIESLDLSYNKLSGEI 928
Query: 419 PPQLTELHSLSTFDVSYNNLSGPIPD-KEQFSTFDESSYRGNLFLCGPAINKGCTNLPEL 477
P +L EL+ L F V+YNN+SG +PD K QF TFDE SY GN FLCG + + C E
Sbjct: 929 PLELVELNFLEVFSVAYNNISGRVPDTKAQFGTFDERSYEGNPFLCGTLLKRKCNTSIEP 988
Query: 478 LEPSSKGAEDES---EVDLVAFYWSFVASCVTVMLGLLAILWVNPYWRRLWFYFIEDCID 534
S+ E E+ +++ V F+ SF S + ++LG + IL++NPYWR WF FIE+CI
Sbjct: 989 PCAPSQSFESEAKWYDINHVVFFASFTTSYIMILLGFVTILYINPYWRHRWFNFIEECIY 1048
Query: 535 LCYYWLF 541
CYY++F
Sbjct: 1049 SCYYFVF 1055
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 558 | ||||||
| TAIR|locus:2025012 | 1083 | RLP1 "AT1G07390" [Arabidopsis | 0.960 | 0.494 | 0.439 | 9.1e-116 | |
| TAIR|locus:2037313 | 1000 | RLP13 "AT1G74170" [Arabidopsis | 0.931 | 0.52 | 0.444 | 1.4e-112 | |
| TAIR|locus:2155909 | 908 | RLP56 "AT5G49290" [Arabidopsis | 0.905 | 0.556 | 0.436 | 9.5e-105 | |
| TAIR|locus:2101943 | 891 | RLP45 "AT3G53240" [Arabidopsis | 0.922 | 0.578 | 0.441 | 3.2e-104 | |
| TAIR|locus:2040075 | 935 | RLP21 "AT2G25470" [Arabidopsis | 0.937 | 0.559 | 0.413 | 8.8e-102 | |
| TAIR|locus:2037308 | 976 | RLP14 "AT1G74180" [Arabidopsis | 0.935 | 0.534 | 0.422 | 2.3e-101 | |
| TAIR|locus:2019662 | 965 | RLP15 "AT1G74190" [Arabidopsis | 0.896 | 0.518 | 0.404 | 8.3e-90 | |
| TAIR|locus:2005498 | 1196 | BRI1 "BRASSINOSTEROID INSENSIT | 0.795 | 0.371 | 0.372 | 5.8e-60 | |
| TAIR|locus:2020382 | 756 | RLP3 "AT1G17250" [Arabidopsis | 0.845 | 0.624 | 0.320 | 1.8e-58 | |
| TAIR|locus:2137296 | 811 | RLP46 "receptor like protein 4 | 0.885 | 0.609 | 0.326 | 2.8e-57 |
| TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1141 (406.7 bits), Expect = 9.1e-116, P = 9.1e-116
Identities = 250/569 (43%), Positives = 343/569 (60%)
Query: 2 QLTSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRL 61
QL HGL LDIS N + +++G+V P L +MN S N F+G IPSSIG+M+ L++
Sbjct: 522 QLPILVHGLQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQGTIPSSIGEMKSLQV 581
Query: 62 LDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGK 121
LD+SSN G+L + C+SL L LSNN G+IF + NLT L L+L NNF+G
Sbjct: 582 LDMSSNGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLTGLVGLFLDGNNFTGS 641
Query: 122 IKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQ 181
+++GLL+S L +LDIS+NR SG +P W+G S L L MS N L+G P ++
Sbjct: 642 LEEGLLKSKNLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQLKGPFPF-LRQSPWVE 700
Query: 182 ILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLR-------- 233
+++IS N+ SGS+ +N S+ L LQNN G +P F+ + LE LDLR
Sbjct: 701 VMDISHNSFSGSIPRNVNFPSLRELRLQNNEFTGLVPGNLFKAAGLEVLDLRNNNFSGKI 760
Query: 234 ---INEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRV 290
I++ S LR LLLR N Q IP ++C L ++G++D+SHN+ G IP+C + M F
Sbjct: 761 LNTIDQTSKLRILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFRGPIPSCFSKMSFGAE 820
Query: 291 EN----GYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDG-NDGRMLGALVAVNFMTKNRY 345
+N + FD +L ++ N L DG +G V+F+TK+RY
Sbjct: 821 QNDRTMSLVADFDFSYITFLPHCQYGSHLN-----LDDGVRNGYQPKPATVVDFLTKSRY 875
Query: 346 ESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIE 405
E+Y+GDIL M GLDLS+NEL+G+IP EIGDLQNI LNLS N L+GSIP+S S LK +E
Sbjct: 876 EAYQGDILRYMHGLDLSSNELSGEIPIEIGDLQNIRSLNLSSNRLTGSIPDSISKLKGLE 935
Query: 406 SLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGP 465
SLDLS+NKL+G IPP L +L+SL ++SYNNLSG IP K TFDE SY GN LCG
Sbjct: 936 SLDLSNNKLDGSIPPALADLNSLGYLNISYNNLSGEIPFKGHLVTFDERSYIGNAHLCGL 995
Query: 466 AINKGCTN--LPELLEPSSKGAEDESE-----VDLVAFYWSFVASCVTVMLGLLAILWVN 518
NK C + +PE S+ E+E+E +D+V FYW+ A ++ L L A L+++
Sbjct: 996 PTNKNCISQRVPEPPSVSTHAKEEENEEEGNVIDMVWFYWTCAAVYISTSLALFAFLYID 1055
Query: 519 PYWRRLWFYFIEDCIDLCYYWLFKYKLDS 547
W R WFY + DLC + + ++K S
Sbjct: 1056 SRWSREWFYRV----DLCVHHILQFKRSS 1080
|
|
| TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1111 (396.2 bits), Expect = 1.4e-112, P = 1.4e-112
Identities = 242/545 (44%), Positives = 333/545 (61%)
Query: 1 FQLTSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLR 60
FQL + H L L++S N F+ QN G +LP LV +N++ N F+GN+PSS+ M+ +
Sbjct: 420 FQLPKSAHNLLFLNVSVNKFNHLFLQNFGWILPHLVCVNLAYNGFQGNLPSSLDNMKSIE 479
Query: 61 LLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSG 120
LD+S N F G+L + + C++L L LS+N G++FP N TRLW + + NN F+G
Sbjct: 480 FLDLSHNRFHGKLPRRFLKGCYNLTILKLSHNKLSGEVFPEAANFTRLWVMSMDNNLFTG 539
Query: 121 KIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASL 180
I G L VLDISNN+L+G IPSW+G L L +S N+LEG IP N++ L
Sbjct: 540 NIGKGFRSLPSLNVLDISNNKLTGVIPSWIGERQGLFALQLSNNMLEGEIPTSLFNISYL 599
Query: 181 QILNISENNLSGSMISTLNLSSVEH---LYLQNNALGGSIPNTFFRGSALETLDLRINEH 237
Q+L++S N LSG + ++SS+ H L LQNN L G IP+T + LDLR N
Sbjct: 600 QLLDLSSNRLSGDIPP--HVSSIYHGAVLLLQNNNLSGVIPDTLLLNVIV--LDLRNNRL 655
Query: 238 S----------NLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLF 287
S N+ LLLRGN G IPHQ C L + ++D+S+N+ NGSIP+C++N F
Sbjct: 656 SGNLPEFINTQNISILLLRGNNFTGQIPHQFCSLSNIQLLDLSNNKFNGSIPSCLSNTSF 715
Query: 288 SRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDG-NDGRMLGALVAVNFMTKNRYE 346
+ Y +D+ R A Y+ S L++D N + + F TK+RY+
Sbjct: 716 GLRKGDDSYRYDVPSRF--GTAKDPVYFESL--LMIDEFNMVNETNSQTKIEFATKHRYD 771
Query: 347 SYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIES 406
+Y G L+L+ G+DLS NEL+G+IP E+G L + LNLSHN LSG I ESFS LK +ES
Sbjct: 772 AYMGGNLKLLFGMDLSENELSGEIPVELGGLVELEALNLSHNNLSGVILESFSGLKNVES 831
Query: 407 LDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGPA 466
LDLS N+L G IP QLT++ SL+ F+VSYNNLSG +P QF+TF+ SY GN LCG +
Sbjct: 832 LDLSFNRLQGPIPLQLTDMISLAVFNVSYNNLSGIVPQGRQFNTFETQSYFGNPLLCGKS 891
Query: 467 INKGCTNLPELLEPSSKGAE-DESEVDLVAFYWSFVASCVTVMLGLLAILWVNPYWRRLW 525
I+ C + P+ G E DES VD+ +FYWSFVA+ VT++LG+LA L + W R W
Sbjct: 892 IDISCAS--NNFHPTDNGVEADESTVDMESFYWSFVAAYVTILLGILASLSFDSPWSRAW 949
Query: 526 FYFIE 530
FY ++
Sbjct: 950 FYIVD 954
|
|
| TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
Identities = 236/541 (43%), Positives = 321/541 (59%)
Query: 1 FQLTSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLR 60
FQ+ ++ H L LD S N+ G P N G VLP LV+MN S N F+GN PSS+G+M +
Sbjct: 382 FQMPTSVHNLQVLDFSENNIGGLFPDNFGRVLPNLVHMNGSNNGFQGNFPSSMGEMYNIS 441
Query: 61 LLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSG 120
LD+S NN +GEL QS V +CFSL L LS+N F G P N T L L + NN F+G
Sbjct: 442 FLDLSYNNLSGELPQSFVSSCFSLSILQLSHNKFSGHFLPRQTNFTSLIVLRINNNLFTG 501
Query: 121 KIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASL 180
KI GLL +L +LD+SNN L G +P + F L L +S NLL G +P ++++
Sbjct: 502 KIGVGLLTLVDLCILDMSNNFLEGELPPLLLVFEYLNFLDLSGNLLSGALP---SHVSLD 558
Query: 181 QILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNL 240
+L + NN +G + T L S++ L L+NN L G+IP F ++T D+
Sbjct: 559 NVLFLHNNNFTGPIPDTF-LGSIQILDLRNNKLSGNIPQ-F-----VDTQDISF------ 605
Query: 241 RTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDI 300
LLLRGN L G IP LC K+ ++D+S N+LNG IP+C N+ F + + +
Sbjct: 606 --LLLRGNSLTGYIPSTLCEFSKMRLLDLSDNKLNGFIPSCFNNLSFGLARKEEITNYYV 663
Query: 301 VLRMYLDDAYVSNYYNST--VE-LLLDGNDGRMLGALVAVNFMTKNRYESYKGDI----- 352
+ + +++ +Y ST VE LD ++ + V F TK RY+SY G
Sbjct: 664 AVAL---ESFYLGFYKSTFVVENFRLDYSNYFEID----VKFATKQRYDSYIGAFQFSEG 716
Query: 353 -LELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSH 411
L M GLDLS+NEL+G IP+E+GDL + LNLSHNFLS IP+SFS L+ IESLDLS+
Sbjct: 717 TLNSMYGLDLSSNELSGVIPAELGDLFKLRALNLSHNFLSSHIPDSFSKLQDIESLDLSY 776
Query: 412 NKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGPAINKGC 471
N L G IP QLT L SL+ F+VSYNNLSG IP +QF+TFDE+SY GN LCGP + C
Sbjct: 777 NMLQGSIPHQLTNLTSLAIFNVSYNNLSGIIPQGKQFNTFDENSYLGNPLLCGPPTDTSC 836
Query: 472 TNLPELLEPSSKGAEDESEV--DLVAFYWSFVASCVTVMLGLLAILWVNPYWRRLWFYFI 529
E ++ G ED+ EV D++ FYWS + VT ++G+L ++ V+ WRR W +
Sbjct: 837 ETKKNSEENANGGEEDDKEVAIDMLVFYWSTAGTYVTALIGILVLMCVDCSWRRAWLRLV 896
Query: 530 E 530
+
Sbjct: 897 D 897
|
|
| TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1032 (368.3 bits), Expect = 3.2e-104, P = 3.2e-104
Identities = 240/543 (44%), Positives = 323/543 (59%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
L LD+S N+F+ +LP+++G++L L ++N+S N F GN+PSS+ +M+ + +D+S NNF
Sbjct: 350 LQILDLSVNNFNNQLPKDVGLILASLRHLNLSNNEFLGNMPSSMARMENIEFMDLSYNNF 409
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRS 129
+G+L ++L C+SL WL LS+N F G I + T L L + NN F+GKI LL
Sbjct: 410 SGKLPRNLFTGCYSLSWLKLSHNRFSGPIIRKSSDETSLITLIMDNNMFTGKIPRTLLNL 469
Query: 130 TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENN 189
L V+D+SNN L+G IP W+GNF L++L +S N L+G IP N+ L +L++S N
Sbjct: 470 RMLSVIDLSNNLLTGTIPRWLGNFF-LEVLRISNNRLQGAIPPSLFNIPYLWLLDLSGNF 528
Query: 190 LSGSMISTLNLSSVEHLY---LQNNALGGSIPNTFFRGSALETLDLRINEHS-------- 238
LSGS+ L SS ++ Y L NN L GSIP+T + G L LDLR N+ S
Sbjct: 529 LSGSL--PLRSSS-DYGYILDLHNNNLTGSIPDTLWYG--LRLLDLRNNKLSGNIPLFRS 583
Query: 239 --NLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRV--ENGY 294
++ +LLR N L G IP +LC L + ++D +HNRLN SIP+C+TN+ F N
Sbjct: 584 TPSISVVLLRENNLTGKIPVELCGLSNVRMLDFAHNRLNESIPSCVTNLSFGSGGHSNAD 643
Query: 295 LYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILE 354
+ L + Y YY S + D + V V F K RY+ Y L
Sbjct: 644 SDWYPASLLSNFMEIYTEVYYESLIVSDRFSLD-YSVDFNVQVEFAVKQRYDLYMRGTLN 702
Query: 355 LMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKL 414
M GLDLS+NEL+G+IP E+GDL+ + LNLS N LSGSIP SFSNL+ IESLDLS NKL
Sbjct: 703 QMFGLDLSSNELSGNIPEELGDLKRVRSLNLSRNSLSGSIPGSFSNLRSIESLDLSFNKL 762
Query: 415 NGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGPAINKGCTNL 474
+G IP QLT L SL F+VSYNNLSG IP +QF+TF E SY GN LCG + C
Sbjct: 763 HGTIPSQLTLLQSLVVFNVSYNNLSGVIPQGKQFNTFGEKSYLGNFLLCGSPTKRSCGGT 822
Query: 475 PELLEPSSKGAEDESE---VDLVAFYWSFVASCVTVMLGLLAILWVNPYWRRLWFYFIED 531
S K ED+ E +D+V +WS + VTVM+G L L + WRR WF ++
Sbjct: 823 TI---SSGKEYEDDDESGLLDIVVLWWSLGTTYVTVMMGFLVFLCFDSPWRRAWFCLVDT 879
Query: 532 CID 534
ID
Sbjct: 880 FID 882
|
|
| TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1009 (360.2 bits), Expect = 8.8e-102, P = 8.8e-102
Identities = 227/549 (41%), Positives = 320/549 (58%)
Query: 1 FQLTSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLR 60
F + + H L D S N+ GK P M LP LV +N S N F+G P+SIG+M+ +
Sbjct: 383 FPIPTMVHNLQIFDFSANNI-GKFPDKMDHALPNLVRLNGSNNGFQGYFPTSIGEMKNIS 441
Query: 61 LLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSG 120
LD+S NNF+G+L +S V C S+ +L LS+N F G+ P N L L + NN F+G
Sbjct: 442 FLDLSYNNFSGKLPRSFVTGCVSIMFLKLSHNKFSGRFLPRETNFPSLDVLRMDNNLFTG 501
Query: 121 KIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASL 180
I GL ST L +LD+SNN LSG IP W+ F L + +S N LEG IP + L
Sbjct: 502 NIGGGLSNSTMLRILDMSNNGLSGAIPRWLFEFPYLDYVLISNNFLEGTIPPSLLGMPFL 561
Query: 181 QILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHS-- 238
L++S N SG++ S ++ +++L NN G IP+T + +++ LDLR N+ S
Sbjct: 562 SFLDLSGNQFSGALPSHVDSELGIYMFLHNNNFTGPIPDTLLK--SVQILDLRNNKLSGS 619
Query: 239 --------NLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRV 290
++ LLL+GN L G IP +LC L + ++D+S N+LNG IP+C++N+ F R+
Sbjct: 620 IPQFDDTQSINILLLKGNNLTGSIPRELCDLSNVRLLDLSDNKLNGVIPSCLSNLSFGRL 679
Query: 291 ENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGND-GRMLGALVAVNFMTKNRYESYK 349
+ + +I +L + Y ST L+D + R + F K RY+SY
Sbjct: 680 QEDAM-ALNIP-PSFLQTSLEMELYKST--FLVDKIEVDRSTYQETEIKFAAKQRYDSYS 735
Query: 350 G------DILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKM 403
G IL LM G+DLSNNEL+G IP+E+GDL + LNLSHN L GSIP SFS L
Sbjct: 736 GRSEFSEGILRLMYGMDLSNNELSGVIPTELGDLLKLRTLNLSHNSLLGSIPSSFSKLID 795
Query: 404 IESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFLC 463
+ESLDLSHN L G IP L+ L SL+ FDVS NNLSG IP QF+TF+E SY GN LC
Sbjct: 796 VESLDLSHNMLQGSIPQLLSSLTSLAVFDVSSNNLSGIIPQGRQFNTFEEESYLGNPLLC 855
Query: 464 GPAINKGC-TNL-PELLEPSSKGAEDESEVDLVAFYWSFVASCVTVMLGLLAILWVNPYW 521
GP ++ C TN PE + + +D++ +D++ FY+S + VT ++G+L ++ + W
Sbjct: 856 GPPTSRSCETNKSPEEADNGQEEEDDKAAIDMMVFYFSTASIYVTALIGVLVLMCFDCPW 915
Query: 522 RRLWFYFIE 530
RR W ++
Sbjct: 916 RRAWLRIVD 924
|
|
| TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1005 (358.8 bits), Expect = 2.3e-101, P = 2.3e-101
Identities = 233/552 (42%), Positives = 326/552 (59%)
Query: 1 FQLTSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLR 60
FQ+ + H L LD S N +G LP N+G VLP+L++MN S N F+GN+PSS+G+M +
Sbjct: 422 FQIPTIVHKLQVLDFSANDITGVLPDNIGHVLPRLLHMNGSHNGFQGNLPSSMGEMNDIS 481
Query: 61 LLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSG 120
LD+S NNF+GEL +SL+ CFSL L LS+N+F G I P LT L L ++NN F+G
Sbjct: 482 FLDLSYNNFSGELPRSLLTGCFSLITLQLSHNSFSGPILPIQTRLTSLIVLRMHNNLFTG 541
Query: 121 KIKDGLLRSTELMVLDISNNRLSGHIPSWMG-NFSTLQILSMSKNLLEGNIPVQFNNLAS 179
+I GL L + D SNNRL+G I S + + S L +L +S NLLEG +P +
Sbjct: 542 EIGVGLRTLVNLSIFDASNNRLTGLISSSIPPDSSHLIMLLLSNNLLEGTLPPSLLAIHH 601
Query: 180 LQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHS 238
L L++S N LSG + S++ N ++L NN+ G +P T + + LDLR N+ S
Sbjct: 602 LNFLDLSGNLLSGDLPSSVVNSMYGIKIFLHNNSFTGPLPVTLLENAYI--LDLRNNKLS 659
Query: 239 N----------LRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFS 288
+ TLLLRGN L G IP +LC L + ++D+S N+LNG IP C+ N L +
Sbjct: 660 GSIPQFVNTGKMITLLLRGNNLTGSIPRKLCDLTSIRLLDLSDNKLNGVIPPCL-NHLST 718
Query: 289 RVENGY-LYGFDIVLRMYLDDAYVSNYYNSTV---ELLLDGNDGRMLGALVAVNFMTKNR 344
+ G L GF + D+ +Y ST E +L + M+ V + F K R
Sbjct: 719 ELGEGIGLSGFS--QEISFGDSLQMEFYRSTFLVDEFMLYYDSTYMI---VEIEFAAKQR 773
Query: 345 YESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMI 404
Y+S+ G L+ M GLDLS+NEL+G IP+E+GDL + LNLS N LS SIP +FS LK I
Sbjct: 774 YDSFSGGTLDYMYGLDLSSNELSGVIPAELGDLSKLRALNLSRNLLSSSIPANFSKLKDI 833
Query: 405 ESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCG 464
ESLDLS+N L G IP QLT L SL+ F+VS+NNLSG IP QF+TF+++SY GN LCG
Sbjct: 834 ESLDLSYNMLQGNIPHQLTNLTSLAVFNVSFNNLSGIIPQGGQFNTFNDNSYLGNPLLCG 893
Query: 465 PAINKGCTNLPELLEPSSKGAE------DESEVDLVAFYWSFVASCVTVMLGLLAILWVN 518
++ C E + G E DE+ +D+V YW+ ++ ++G+L ++ +
Sbjct: 894 TPTDRSCEGKKNTKEADNGGEEEEEDDDDEAAIDMVVLYWTTGSTYAIALIGILVLMCFD 953
Query: 519 PYWRRLWFYFIE 530
WRR W ++
Sbjct: 954 CPWRRTWLCIVD 965
|
|
| TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 896 (320.5 bits), Expect = 8.3e-90, P = 8.3e-90
Identities = 217/536 (40%), Positives = 310/536 (57%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSS-IGKMQGLRLLDVSSNN 68
L L+ S+N+F LP ++G + + YM++S+NSF GN+P S + + +L +S N
Sbjct: 440 LRYLNTSKNNFQENLPSSLGN-MNGIQYMDLSRNSFHGNLPRSFVNGCYSMAILKLSHNK 498
Query: 69 FAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLR 128
+GE+ N ++ L + NN F G+I +L L L + NNN +G I +
Sbjct: 499 LSGEIFPEST-NFTNILGLFMDNNLFTGKIGQGLRSLINLELLDMSNNNLTGVIPSWIGE 557
Query: 129 STELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISEN 188
L L IS+N L G IP + N S+LQ+L +S N L G IP Q ++ + +L + +N
Sbjct: 558 LPSLTALLISDNFLKGDIPMSLFNKSSLQLLDLSANSLSGVIPPQHDSRNGVVLL-LQDN 616
Query: 189 NLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGN 248
LSG++ TL L++VE L L+NN G IP E ++++ N+ LLLRGN
Sbjct: 617 KLSGTIPDTL-LANVEILDLRNNRFSGKIP---------EFINIQ-----NISILLLRGN 661
Query: 249 YLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFS--RVENGYLYGF------DI 300
G IPHQLC L + ++D+S+NRLNG+IP+C++N F + Y Y F D+
Sbjct: 662 NFTGQIPHQLCGLSNIQLLDLSNNRLNGTIPSCLSNTSFGFGKECTSYDYDFGISFPSDV 721
Query: 301 VLRMYLDDAYVSN-----YYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILEL 355
L + SN Y+ S + L D + + F TK+RY++Y G L+L
Sbjct: 722 FNGFSLHQDFSSNKNGGIYFKSLLTLDPLSMDYKA-ATQTKIEFATKHRYDAYMGGNLKL 780
Query: 356 MAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN 415
+ G+DLS NEL+G+IP E G L + LNLSHN LSG IP+S S+++ +ES DLS N+L
Sbjct: 781 LFGMDLSENELSGEIPVEFGGLLELRALNLSHNNLSGVIPKSISSMEKMESFDLSFNRLQ 840
Query: 416 GQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGPAINKGCTNLP 475
G+IP QLTEL SLS F VS+NNLSG IP QF+TFD SY GN LCG N+ C N
Sbjct: 841 GRIPSQLTELTSLSVFKVSHNNLSGVIPQGRQFNTFDAESYFGNRLLCGQPTNRSCNN-- 898
Query: 476 ELLEPSSKGAE-DESEVDLVAFYWSFVASCVTVMLGLLAILWVNPYWRRLWFYFIE 530
E + G E DES +D+V+FY SF A+ VT+++G+LA L + W R WFY ++
Sbjct: 899 NSYEEADNGVEADESIIDMVSFYLSFAAAYVTILIGILASLSFDSPWSRFWFYKVD 954
|
|
| TAIR|locus:2005498 BRI1 "BRASSINOSTEROID INSENSITIVE 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 624 (224.7 bits), Expect = 5.8e-60, P = 5.8e-60
Identities = 176/472 (37%), Positives = 249/472 (52%)
Query: 3 LTSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIP-SSIGKMQGLRL 61
L+ A L LD+S N F G +P G L + +S N+F G +P ++ KM+GL++
Sbjct: 311 LSGACDTLTGLDLSGNHFYGAVPPFFGSC-SLLESLALSSNNFSGELPMDTLLKMRGLKV 369
Query: 62 LDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTR--LWALYLYNNNFS 119
LD+S N F+GEL +SL SL LDLS+NNF G I PN + L LYL NN F+
Sbjct: 370 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 429
Query: 120 GKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLAS 179
GKI L +EL+ L +S N LSG IPS +G+ S L+ L + N+LEG IP + + +
Sbjct: 430 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 489
Query: 180 LQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHS 238
L+ L + N+L+G + S L N +++ + L NN L G IP R LE
Sbjct: 490 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR---LE---------- 536
Query: 239 NLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGF 298
NL L L N G IP +L R L +D++ N NG+IPA + ++ ++ G
Sbjct: 537 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS-GKIAANFIAGK 595
Query: 299 DIVLRMYLDDAYVSNYYNSTVELL-LDGNDGRMLGALVAVN--FMTKNRYESYKGDILE- 354
V Y+ + + + LL G L L N +T Y + +
Sbjct: 596 RYV---YIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN 652
Query: 355 --LMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHN 412
M LD+S N L+G IP EIG + + LNL HN +SGSIP+ +L+ + LDLS N
Sbjct: 653 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 712
Query: 413 KLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCG 464
KL+G+IP ++ L L+ D+S NNLSGPIP+ QF TF + + N LCG
Sbjct: 713 KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 764
|
|
| TAIR|locus:2020382 RLP3 "AT1G17250" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 573 (206.8 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
Identities = 163/508 (32%), Positives = 257/508 (50%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
L LD S N F+G +PQ +G L KL + N+ G IPS I + L L + N+
Sbjct: 229 LSKLDFSYNDFTGNIPQGLGRCL-KLSVLQAGFNNISGEIPSDIYNLSELEQLFLPVNHL 287
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRS 129
+G+++ + + L+ L+L +N+ G+I + L+RL +L L+ NN +G + L
Sbjct: 288 SGKINDDIT-HLTKLKSLELYSNHLGGEIPMDIGQLSRLQSLQLHINNITGTVPPSLANC 346
Query: 130 TELMVLDISNNRLSGHIPSW-MGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISEN 188
T L+ L++ NRL G + F +L IL + N G+ P + ++ SL + + N
Sbjct: 347 TNLVKLNLRLNRLEGTLSELDFSRFQSLSILDLGNNSFSGDFPWRVHSCKSLSAMRFASN 406
Query: 189 NLSGSMIS-TLNLSSVEHLYLQNN-------ALG---GS-------IPNTFFRGSALETL 230
L+G + L L S+ L L +N ALG G I F+ +
Sbjct: 407 KLTGQISPHVLELESLSILSLSDNKLMNITGALGILQGCRNLSTLLIGKNFYNETFPSDK 466
Query: 231 DLRINE-HSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACI---TNML 286
DL ++ NL+ G+ L+G IP L L+ L ++D+SHN+L GSIP + ++
Sbjct: 467 DLISSDGFPNLQIFASGGSGLRGEIPAWLIKLKSLAVIDLSHNQLVGSIPGWLGTFPHLF 526
Query: 287 FSRVENGYLYGFDIVLRMYLDDAYVSNY-YNSTVELLLDGNDGRMLGALVAVNFMTKNRY 345
+ + L G ++ ++ A +S Y++T L L V+ N +T +
Sbjct: 527 YIDLSENLLSG-ELPKDLFQLKALMSQKAYDATERNYLK------LPVFVSPNNVTT--H 577
Query: 346 ESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIE 405
+ Y + L G+ + N L G IP E+G L+ +H L LSHN+LSG IP S L +E
Sbjct: 578 QQYN-QLFSLPPGIYIRRNNLKGSIPIEVGQLKVLHVLELSHNYLSGIIPHELSKLTSLE 636
Query: 406 SLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGP 465
LDLS+N L+G+IP LT LH +S F+V N+L GPIP QF TF +++++GN LCG
Sbjct: 637 RLDLSNNHLSGRIPWSLTSLHYMSYFNVVNNSLDGPIPTGSQFDTFPQANFKGNPLLCGG 696
Query: 466 AINKGCTNLPELLEPSSKGAEDESEVDL 493
+ C +L ++ A+ E E +L
Sbjct: 697 ILLTSCKASTKLPATTTNKADTEDEEEL 724
|
|
| TAIR|locus:2137296 RLP46 "receptor like protein 46" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
Identities = 175/536 (32%), Positives = 271/536 (50%)
Query: 9 GLHSLDISRNSFSGKLP-QNMGIVLP--KLVYMNISKNSFEGNIPSSIGKMQGLRLLDVS 65
GL L + R + KL N G V P KL ++++ EGNIP + L LD+S
Sbjct: 298 GLQKLKVLRLEGNNKLQWNNNGYVFPQFKLTHLSLRSCGLEGNIPDWLKNQTALVYLDLS 357
Query: 66 SNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDG 125
N G + L + + LS+N G + PN L+ L L NNFSG+I D
Sbjct: 358 INRLEGRFPKWLAD--LKIRNITLSDNRLTGSLPPNLFQRPSLYYLVLSRNNFSGQIPDT 415
Query: 126 LLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNI 185
+ S ++MVL +S N SG +P + L++L +SKN L G P +F + L+ L+I
Sbjct: 416 IGES-QVMVLMLSENNFSGSVPKSITKIPFLKLLDLSKNRLSGEFP-RFRPESYLEWLDI 473
Query: 186 SENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINE--------- 236
S N SG + + S+ L QNN G P F S L LDL N+
Sbjct: 474 SSNEFSGDVPAYFGGSTSMLLMSQNN-FSGEFPQNFRNLSYLIRLDLHDNKISGTVASLI 532
Query: 237 ---HSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENG 293
S++ L LR N L+G IP + +L L ++D+S N L+G +P+ + N L +++
Sbjct: 533 SQLSSSVEVLSLRNNSLKGSIPEGISNLTSLKVLDLSENNLDGYLPSSLGN-LTCMIKSP 591
Query: 294 YLYGFDIVLRMYLDDAYVSNYYN-STVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDI 352
I Y S+Y + +E L++ + + +LV VN+ KN +
Sbjct: 592 EPSAMTI-------RPYFSSYTDIPNIERLIE-IESEDIFSLV-VNW--KNSKQVLFDRN 640
Query: 353 LELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHN 412
L LDLS N+L G+IP+ +G+L+++ LNLS+N SG IP+SF +L+ +ESLDLSHN
Sbjct: 641 FYLYTLLDLSKNKLHGEIPTSLGNLKSLKVLNLSNNEFSGLIPQSFGDLEKVESLDLSHN 700
Query: 413 KLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESS-YRGNLFLCGPAINKGC 471
L G+IP L++L L+T D+ N L G IP+ Q + + Y N +CG I C
Sbjct: 701 NLTGEIPKTLSKLSELNTLDLRNNKLKGRIPESPQLDRLNNPNIYANNSGICGMQIQVPC 760
Query: 472 TNLP-ELLEPSSKGAEDESEVDLVAFYWSFVASCVTVMLG-LLAILWVNPYWRRLW 525
P + +P+ + E++ E + F W+ A+ + G L+A+++++ + LW
Sbjct: 761 --FPTQTKQPAEEKEEEDKEEEETIFSWN--AAAIGCSCGFLIAVVFMS--YNELW 810
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 558 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-59 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 6e-50 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 4e-46 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-44 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 3e-30 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 6e-30 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 3e-28 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 8e-22 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-17 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 5e-11 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 6e-10 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 7e-10 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 8e-08 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 2e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 6e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 6e-06 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 9e-06 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-05 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 3e-05 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 9e-05 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 1e-04 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 4e-04 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 0.001 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 0.001 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 212 bits (542), Expect = 1e-59
Identities = 154/498 (30%), Positives = 231/498 (46%), Gaps = 71/498 (14%)
Query: 9 GLHSLDISRNSFSGKLPQNMGIV-----------------------LPKLVYMNISKNSF 45
L +LD+S N SG++P ++G L L ++ ++ N
Sbjct: 141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL 200
Query: 46 EGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNL 105
G IP +G+M+ L+ + + NN +GE+ + SL LDL NN G I + NL
Sbjct: 201 VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG-GLTSLNHLDLVYNNLTGPIPSSLGNL 259
Query: 106 TRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNL 165
L L+LY N SG I + +L+ LD+S+N LSG IP + L+IL + N
Sbjct: 260 KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN 319
Query: 166 LEGNIPVQFNNLASLQILNISENNLSGSMISTL----NLSSVEHLYLQNNALGGSIPNTF 221
G IPV +L LQ+L + N SG + L NL+ ++ L N L G IP
Sbjct: 320 FTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLD---LSTNNLTGEIPEGL 376
Query: 222 FRGSALETLDLRINEH-----------SNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDIS 270
L L L N +LR + L+ N G +P + L + +DIS
Sbjct: 377 CSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDIS 436
Query: 271 HNRLNGSIPACITNM----LFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGN 326
+N L G I + +M + S N + G L D++ S + LD +
Sbjct: 437 NNNLQGRINSRKWDMPSLQMLSLARNKFFGG--------LPDSFGSKRLEN-----LDLS 483
Query: 327 DGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLS 386
+ GA V + + ELM L LS N+L+G+IP E+ + + L+LS
Sbjct: 484 RNQFSGA-VPRKLGS----------LSELMQ-LKLSENKLSGEIPDELSSCKKLVSLDLS 531
Query: 387 HNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKE 446
HN LSG IP SFS + ++ LDLS N+L+G+IP L + SL ++S+N+L G +P
Sbjct: 532 HNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTG 591
Query: 447 QFSTFDESSYRGNLFLCG 464
F + S+ GN+ LCG
Sbjct: 592 AFLAINASAVAGNIDLCG 609
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 185 bits (470), Expect = 6e-50
Identities = 148/457 (32%), Positives = 224/457 (49%), Gaps = 54/457 (11%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
+ ++++S N SG +P ++ L Y+N+S N+F G+IP G + L LD+S+N
Sbjct: 95 IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNML 152
Query: 70 AGELSQSLVINCFS-LEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLR 128
+GE+ I FS L+ LDL N VG+I + NLT L L L +N G+I L +
Sbjct: 153 SGEIPND--IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ 210
Query: 129 STELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISEN 188
L + + N LSG IP +G ++L L + N L G IP NL +LQ L + +N
Sbjct: 211 MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN 270
Query: 189 NLSGSMI-STLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSN-------- 239
LSG + S +L + L L +N+L G IP + LE L L N +
Sbjct: 271 KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS 330
Query: 240 ---LRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLY 296
L+ L L N G IP L L ++D+S N L G IP + + +G L
Sbjct: 331 LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS-------SGNL- 382
Query: 297 GFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYE--SYKGDI-- 352
F ++L + NS +G + +L A + + R + S+ G++
Sbjct: 383 -FKLIL-----------FSNSL--------EGEIPKSLGACRSLRRVRLQDNSFSGELPS 422
Query: 353 ----LELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLD 408
L L+ LD+SNN L G I S D+ ++ L+L+ N G +P+SF + K +E+LD
Sbjct: 423 EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLD 481
Query: 409 LSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDK 445
LS N+ +G +P +L L L +S N LSG IPD+
Sbjct: 482 LSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDE 518
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 173 bits (441), Expect = 4e-46
Identities = 141/483 (29%), Positives = 220/483 (45%), Gaps = 67/483 (13%)
Query: 12 SLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKM-QGLRLLDVSSNNFA 70
S+D+S + SGK+ + LP + +N+S N G IP I LR L++S+NNF
Sbjct: 73 SIDLSGKNISGKISSAI-FRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFT 131
Query: 71 GELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRST 130
G + + + N LE LDLSNN G+I + + + L L L N GKI + L T
Sbjct: 132 GSIPRGSIPN---LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLT 188
Query: 131 ELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNL 190
L L +++N+L G IP +G +L+ + + N L G IP + L SL L++ NNL
Sbjct: 189 SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248
Query: 191 SGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHS----------- 238
+G + S+L NL ++++L+L N L G IP + F L +LDL N S
Sbjct: 249 TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ 308
Query: 239 NLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGF 298
NL L L N G IP L L +L ++ + N+ +G IP
Sbjct: 309 NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP------------------- 349
Query: 299 DIVLRMYLDDAYVSNYYNSTVELLLDGND--GRMLGALVAVNFMTKNRYESYKGDILELM 356
+ + N TV L L N+ G + L + + K
Sbjct: 350 ----------KNLGKHNNLTV-LDLSTNNLTGEIPEGLCSSGNLFK-------------- 384
Query: 357 AGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG 416
L L +N L G+IP +G +++ + L N SG +P F+ L ++ LD+S+N L G
Sbjct: 385 --LILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQG 442
Query: 417 QIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGPAINKGCTNLPE 476
+I + ++ SL ++ N G +PD + N F A+ + +L E
Sbjct: 443 RINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQF--SGAVPRKLGSLSE 500
Query: 477 LLE 479
L++
Sbjct: 501 LMQ 503
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 168 bits (428), Expect = 2e-44
Identities = 121/414 (29%), Positives = 195/414 (47%), Gaps = 66/414 (15%)
Query: 34 KLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNN 93
++V +++S + G I S+I ++ ++ +++S+N +G + + SL +L+LSNNN
Sbjct: 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNN 129
Query: 94 FVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNF 153
F G I + L L L NN SG+I + + + L VLD+ N L G IP+ + N
Sbjct: 130 FTGSIPRGSIPN--LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNL 187
Query: 154 STLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNA 212
++L+ L+++ N L G IP + + SL+ + + NNLSG + + L+S+ HL L N
Sbjct: 188 TSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247
Query: 213 LGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHN 272
L G IP++ NL+ L L N L GPIP + L+KL +D+S N
Sbjct: 248 LTGPIPSSL-------------GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294
Query: 273 RLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELL-LDGND--GR 329
L+G IP + + +E+L L N+ G+
Sbjct: 295 SLSGEIPELVIQL-------------------------------QNLEILHLFSNNFTGK 323
Query: 330 MLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNF 389
+ AL + L + L L +N+ +G+IP +G N+ L+LS N
Sbjct: 324 IPVALTS----------------LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367
Query: 390 LSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIP 443
L+G IPE + + L L N L G+IP L SL + N+ SG +P
Sbjct: 368 LTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP 421
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 3e-30
Identities = 108/340 (31%), Positives = 156/340 (45%), Gaps = 81/340 (23%)
Query: 104 NLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSK 163
N +R+ ++ L N SGKI + R + +++SNN+LSG IP
Sbjct: 67 NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIP---------------- 110
Query: 164 NLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFR 223
+I F +SL+ LN+S NN +GS I ++ ++E L L NN L G IPN
Sbjct: 111 ----DDI---FTTSSSLRYLNLSNNNFTGS-IPRGSIPNLETLDLSNNMLSGEIPN---- 158
Query: 224 GSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACIT 283
I S+L+ L L GN L G IP+ L +L L + ++ N+L G IP +
Sbjct: 159 ---------DIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG 209
Query: 284 NMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKN 343
M + +YL YN+ L G +G L ++N
Sbjct: 210 QMKSLKW-------------IYLG-------YNN-----LSGEIPYEIGGLTSLNH---- 240
Query: 344 RYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKM 403
LDL N LTG IPS +G+L+N+ L L N LSG IP S +L+
Sbjct: 241 ---------------LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQK 285
Query: 404 IESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIP 443
+ SLDLS N L+G+IP + +L +L + NN +G IP
Sbjct: 286 LISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP 325
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 6e-30
Identities = 88/275 (32%), Positives = 131/275 (47%), Gaps = 43/275 (15%)
Query: 7 QHGLHSLDISRNSFSGKLPQNMGIV--LPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDV 64
+ L LD+S N+ +G++P+ + L KL+ + NS EG IP S+G + LR + +
Sbjct: 355 HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS---NSLEGEIPKSLGACRSLRRVRL 411
Query: 65 SSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKD 124
N+F+GEL + +LD+SNNN G+I ++ L L L N F G + D
Sbjct: 412 QDNSFSGELPSEFT-KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD 470
Query: 125 GLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILN 184
S L LD+S N+ SG +P +G+ S L L +S+N L G IP + ++ L L+
Sbjct: 471 -SFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLD 529
Query: 185 ISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLL 244
+S N LSG IP +F L LDL N+
Sbjct: 530 LSHNQLSGQ-----------------------IPASFSEMPVLSQLDLSQNQ-------- 558
Query: 245 LRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIP 279
L G IP L ++ L ++ISHN L+GS+P
Sbjct: 559 -----LSGEIPKNLGNVESLVQVNISHNHLHGSLP 588
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 3e-28
Identities = 77/205 (37%), Positives = 108/205 (52%), Gaps = 8/205 (3%)
Query: 5 SAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDV 64
A L + + NSFSG+LP LP + +++IS N+ +G I S M L++L +
Sbjct: 401 GACRSLRRVRLQDNSFSGELPSEF-TKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSL 459
Query: 65 SSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKD 124
+ N F G L S LE LDLS N F G + +L+ L L L N SG+I D
Sbjct: 460 ARNKFFGGLPDSF--GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPD 517
Query: 125 GLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILN 184
L +L+ LD+S+N+LSG IP+ L L +S+N L G IP N+ SL +N
Sbjct: 518 ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVN 577
Query: 185 ISENNLSGSMIST-----LNLSSVE 204
IS N+L GS+ ST +N S+V
Sbjct: 578 ISHNHLHGSLPSTGAFLAINASAVA 602
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 99.5 bits (248), Expect = 8e-22
Identities = 89/277 (32%), Positives = 137/277 (49%), Gaps = 47/277 (16%)
Query: 175 NNLASLQILNISENNLSGSMIS-TLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLR 233
NN + + +++S N+SG + S L ++ + L NN L G IP+ F S
Sbjct: 66 NNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTS-------- 117
Query: 234 INEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENG 293
S+LR L L N G IP + L +D+S+N L+G IP I FS ++
Sbjct: 118 ----SSLRYLNLSNNNFTGSIPRG--SIPNLETLDLSNNMLSGEIPNDIG--SFSSLKVL 169
Query: 294 YLYGFDIVLRMYLDDAYVSNYYNSTVELL------LDGNDGRMLGALVAVNFMTKNRYES 347
L G +V ++ ++N +++E L L G R LG + ++ ++ Y
Sbjct: 170 DLGGNVLVGKI---PNSLTNL--TSLEFLTLASNQLVGQIPRELGQMKSLKWI----YLG 220
Query: 348 YKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESL 407
Y N L+G+IP EIG L +++ L+L +N L+G IP S NLK ++ L
Sbjct: 221 Y---------------NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYL 265
Query: 408 DLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD 444
L NKL+G IPP + L L + D+S N+LSG IP+
Sbjct: 266 FLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE 302
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 86.0 bits (213), Expect = 1e-17
Identities = 37/86 (43%), Positives = 55/86 (63%)
Query: 358 GLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 417
GL L N L G IP++I L+++ +NLS N + G+IP S ++ +E LDLS+N NG
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481
Query: 418 IPPQLTELHSLSTFDVSYNNLSGPIP 443
IP L +L SL +++ N+LSG +P
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 5e-11
Identities = 30/89 (33%), Positives = 52/89 (58%)
Query: 110 ALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGN 169
L L N G I + + + L +++S N + G+IP +G+ ++L++L +S N G+
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481
Query: 170 IPVQFNNLASLQILNISENNLSGSMISTL 198
IP L SL+ILN++ N+LSG + + L
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 6e-10
Identities = 26/70 (37%), Positives = 44/70 (62%)
Query: 353 LELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHN 412
L + ++LS N + G+IP +G + ++ L+LS+N +GSIPES L + L+L+ N
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500
Query: 413 KLNGQIPPQL 422
L+G++P L
Sbjct: 501 SLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 7e-10
Identities = 28/65 (43%), Positives = 40/65 (61%)
Query: 380 IHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLS 439
I GL L + L G IP S L+ ++S++LS N + G IPP L + SL D+SYN+ +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479
Query: 440 GPIPD 444
G IP+
Sbjct: 480 GSIPE 484
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 3e-09
Identities = 30/85 (35%), Positives = 44/85 (51%)
Query: 87 LDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHI 146
L L N G I + L L ++ L N+ G I L T L VLD+S N +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 147 PSWMGNFSTLQILSMSKNLLEGNIP 171
P +G ++L+IL+++ N L G +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 8e-08
Identities = 25/73 (34%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 5 SAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDV 64
S L S+++S NS G +P ++G + L +++S NSF G+IP S+G++ LR+L++
Sbjct: 439 SKLRHLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497
Query: 65 SSNNFAGELSQSL 77
+ N+ +G + +L
Sbjct: 498 NGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 2e-07
Identities = 69/236 (29%), Positives = 110/236 (46%), Gaps = 17/236 (7%)
Query: 56 MQGLRLLDVSSNNFAGELSQS-LVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLY 114
+ L LD+ S + L S ++N L LDL+ N I + LT L +L L
Sbjct: 66 LSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISE-LLELTNLTSLDLD 124
Query: 115 NNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQF 174
NNN + L + L LD+S+N++ +PS + N L+ L +S N L ++P
Sbjct: 125 NNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLL 182
Query: 175 NNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRI 234
+NL++L L++S N +S LS++E L L NN++ + ++ L L+L
Sbjct: 183 SNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSI-IELLSSLSNLKNLSGLELSN 241
Query: 235 NEH----------SNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPA 280
N+ SNL TL L N + L L L +D+S N L+ ++P
Sbjct: 242 NKLEDLPESIGNLSNLETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLSNALPL 295
|
Length = 394 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 6e-07
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 13 LDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGE 72
L + G +P ++ L L +N+S NS GNIP S+G + L +LD+S N+F G
Sbjct: 423 LGLDNQGLRGFIPNDIS-KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481
Query: 73 LSQSLVINCFSLEWLDLSNNNFVGQI 98
+ +SL SL L+L+ N+ G++
Sbjct: 482 IPESLG-QLTSLRILNLNGNSLSGRV 506
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 6e-06
Identities = 25/68 (36%), Positives = 43/68 (63%)
Query: 84 LEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLS 143
L+ ++LS N+ G I P+ ++T L L L N+F+G I + L + T L +L+++ N LS
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503
Query: 144 GHIPSWMG 151
G +P+ +G
Sbjct: 504 GRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 9e-06
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 13/80 (16%)
Query: 203 VEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLR 262
++ L L N L G IPN S L +L+++ L GN ++G IP L +
Sbjct: 420 IDGLGLDNQGLRGFIPNDI---SKLR----------HLQSINLSGNSIRGNIPPSLGSIT 466
Query: 263 KLGIMDISHNRLNGSIPACI 282
L ++D+S+N NGSIP +
Sbjct: 467 SLEVLDLSYNSFNGSIPESL 486
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 3e-05
Identities = 35/155 (22%), Positives = 56/155 (36%), Gaps = 60/155 (38%)
Query: 135 LDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSM 194
L + N L G IP+ + LQ +++S N + GNIP ++ SL++L+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLD---------- 472
Query: 195 ISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPI 254
L N+ GSIP + + + ++LR L L GN L
Sbjct: 473 -------------LSYNSFNGSIPES-------------LGQLTSLRILNLNGNSL---- 502
Query: 255 PHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSR 289
+G +PA + L R
Sbjct: 503 --------------------SGRVPAALGGRLLHR 517
|
Length = 623 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 3e-05
Identities = 27/56 (48%), Positives = 32/56 (57%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKL 414
LDLSNN LT L N+ L+LS N L+ PE+FS L + SLDLS N L
Sbjct: 5 LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 9e-05
Identities = 84/327 (25%), Positives = 137/327 (41%), Gaps = 51/327 (15%)
Query: 137 ISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNI--------PVQFNNLASLQILNISEN 188
+S+N S NF + S++ N L N+ P + L SL +L+ S
Sbjct: 21 LSSNTYHTTPQSINLNFPDSNLESVAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGI 80
Query: 189 NLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGN 248
+ + LNL + L L N L +I + E +NL +L L N
Sbjct: 81 SSLDGSENLLNLLPLPSLDLNLNRLRSNI--------------SELLELTNLTSLDLDNN 126
Query: 249 YLQGPIPHQLCHL-RKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLD 307
+ IP + L L +D+S N++ S+P+ + N+ L D+ D
Sbjct: 127 NI-TDIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPN-------LKNLDLSFNDLSD 177
Query: 308 DAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELT 367
+ + ++ L L GN L + + L + LDLSNN +
Sbjct: 178 LPKLLSNLSNLNNLDLSGNKISDLPPEIEL---------------LSALEELDLSNNSII 222
Query: 368 GDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHS 427
++ S + +L+N+ GL LS+N L +PES NL +E+LDLS+N+++ L L +
Sbjct: 223 -ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS--SISSLGSLTN 278
Query: 428 LSTFDVSYNNLSGPIPDKEQFSTFDES 454
L D+S N+LS +P E
Sbjct: 279 LRELDLSGNSLSNALPLIALLLLLLEL 305
|
Length = 394 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 1e-04
Identities = 22/56 (39%), Positives = 31/56 (55%)
Query: 383 LNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNL 438
L+LS+N L+ +F L ++ LDLS N L P + L SL + D+S NNL
Sbjct: 5 LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 4e-04
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 5/61 (8%)
Query: 9 GLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNN 68
L LD+S NSF+G +P+++G L L +N++ NS G +P+++G RLL +S N
Sbjct: 467 SLEVLDLSYNSFNGSIPESLG-QLTSLRILNLNGNSLSGRVPAALGG----RLLHRASFN 521
Query: 69 F 69
F
Sbjct: 522 F 522
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.001
Identities = 58/231 (25%), Positives = 96/231 (41%), Gaps = 14/231 (6%)
Query: 9 GLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNN 68
L LD+S N LP + LP L +++S N ++P + + L LD+S N
Sbjct: 141 NLKELDLSDNKIE-SLPSPLRN-LPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNK 197
Query: 69 FAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLR 128
+ +LE LDLSNN+ + ++ + NL L L L +NN + + +
Sbjct: 198 I--SDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLEL-SNNKLEDLPESIGN 253
Query: 129 STELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFN-NLASLQILNISE 187
+ L LD+SNN++S S +G+ + L+ L +S N L +P+ L +LN+
Sbjct: 254 LSNLETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLL 311
Query: 188 NNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHS 238
+ + L + L S P +L L N
Sbjct: 312 TLKALELKLNSILLNNNILSNG----ETSSPEALSILESLNNLWTLDNALD 358
|
Length = 394 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 0.001
Identities = 23/59 (38%), Positives = 32/59 (54%)
Query: 132 LMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNL 190
L LD+SNNRL+ L++L +S N L P F+ L SL+ L++S NNL
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 558 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 100.0 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.97 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.97 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.97 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.95 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.94 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.92 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.92 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.91 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.89 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.86 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.85 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.8 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.79 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.76 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.75 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.65 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.65 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.54 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.26 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.22 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.22 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.22 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.17 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.17 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.12 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.12 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.1 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.07 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.07 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.06 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.04 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.03 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 99.01 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.99 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.92 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.79 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.71 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.66 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.45 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.44 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.38 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.37 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.25 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.25 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.17 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 98.01 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.0 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.0 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.99 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.96 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.9 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.88 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.85 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.78 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.75 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.71 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.55 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.49 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.48 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 97.35 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 97.12 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.97 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.91 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.86 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.58 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 95.55 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.34 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.76 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 92.98 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 92.91 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 92.28 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 92.28 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 91.84 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 91.47 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 91.47 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 90.09 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 89.82 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 88.73 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 87.03 | |
| TIGR00864 | 2740 | PCC polycystin cation channel protein. Note: this | 83.57 | |
| KOG4242 | 553 | consensus Predicted myosin-I-binding protein [Cell | 80.87 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-47 Score=432.45 Aligned_cols=449 Identities=34% Similarity=0.537 Sum_probs=284.0
Q ss_pred CcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCC
Q 037792 5 SAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSL 84 (558)
Q Consensus 5 ~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 84 (558)
..+++|++|++++|.+++.+|.. .+++|++|++++|.+++..|..++++++|++|++++|.+++.+|..+ .++++|
T Consensus 115 ~~l~~L~~L~Ls~n~l~~~~p~~---~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L 190 (968)
T PLN00113 115 TTSSSLRYLNLSNNNFTGSIPRG---SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSL 190 (968)
T ss_pred ccCCCCCEEECcCCccccccCcc---ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCC
Confidence 36677777777777776666642 25667777777777666666667777777777777776665555544 566667
Q ss_pred CEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccC
Q 037792 85 EWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKN 164 (558)
Q Consensus 85 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 164 (558)
++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..++++++|+.|++++|
T Consensus 191 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 270 (968)
T PLN00113 191 EFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN 270 (968)
T ss_pred CeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCC
Confidence 77777666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCcccchhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCC-------
Q 037792 165 LLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINE------- 236 (558)
Q Consensus 165 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~------- 236 (558)
.+.+..|..+..+++|+.|++++|.+.+..+..+ .+++|+.|++++|.+.+..|..+..+++|+.|++++|.
T Consensus 271 ~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~ 350 (968)
T PLN00113 271 KLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPK 350 (968)
T ss_pred eeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCCh
Confidence 6665566666666666666666666554444333 55556666666555555555555555555555555551
Q ss_pred ----CCCcCEEEccCCcCCCCchhhccC------------------------CCCCCEEEcccCcCccccChhhhcccc-
Q 037792 237 ----HSNLRTLLLRGNYLQGPIPHQLCH------------------------LRKLGIMDISHNRLNGSIPACITNMLF- 287 (558)
Q Consensus 237 ----~~~L~~L~l~~n~l~~~~~~~~~~------------------------l~~L~~L~l~~n~l~~~~p~~~~~l~~- 287 (558)
+++|+.|++++|.+++..|..++. +++|+.|++++|++++..|..+..++.
T Consensus 351 ~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L 430 (968)
T PLN00113 351 NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV 430 (968)
T ss_pred HHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCC
Confidence 234555555555555444444444 444444444444444444444333221
Q ss_pred --cccccCccccccchhhhcccccccCcccchhhhhhccCC------Cccccccceeeeeecccccc-cccc--hhhccc
Q 037792 288 --SRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGN------DGRMLGALVAVNFMTKNRYE-SYKG--DILELM 356 (558)
Q Consensus 288 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~--~~l~~L 356 (558)
..+..+.+.+........+.. +..+.+..+ +............+..+... ..+. ..+++|
T Consensus 431 ~~L~Ls~N~l~~~~~~~~~~l~~---------L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L 501 (968)
T PLN00113 431 YFLDISNNNLQGRINSRKWDMPS---------LQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSEL 501 (968)
T ss_pred CEEECcCCcccCccChhhccCCC---------CcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhcc
Confidence 111222222111110000000 000000000 00000001111122222222 1111 127889
Q ss_pred CEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCC
Q 037792 357 AGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYN 436 (558)
Q Consensus 357 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N 436 (558)
+.|++++|.+.+.+|..+..+++|++|+|++|.+++.+|..|.++++|+.|+|++|++++.+|..+..+++|+.|++++|
T Consensus 502 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N 581 (968)
T PLN00113 502 MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHN 581 (968)
T ss_pred CEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCCCCCcccCCCCcccccCCCCCCCCC
Q 037792 437 NLSGPIPDKEQFSTFDESSYRGNLFLCGPA 466 (558)
Q Consensus 437 ~l~~~~p~~~~~~~l~~~~~~~N~~~C~~~ 466 (558)
++++.+|....+.++....+.|||..|+..
T Consensus 582 ~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 582 HLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred cceeeCCCcchhcccChhhhcCCccccCCc
Confidence 999999998888889999999999999754
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-46 Score=420.42 Aligned_cols=459 Identities=32% Similarity=0.458 Sum_probs=374.0
Q ss_pred CCcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCC
Q 037792 4 TSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFS 83 (558)
Q Consensus 4 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 83 (558)
+..+++|++|++++|.+.+.+|..++..+++|++|++++|.+++..|. +.+++|++|++++|.+++.+|..+ .++++
T Consensus 89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~ 165 (968)
T PLN00113 89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDI-GSFSS 165 (968)
T ss_pred HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHH-hcCCC
Confidence 457899999999999999899999987799999999999999887775 568999999999999987788775 88999
Q ss_pred CCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEccc
Q 037792 84 LEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSK 163 (558)
Q Consensus 84 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 163 (558)
|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+.++++|+.|++++|.+.+..|..++++++|++|++++
T Consensus 166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 245 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245 (968)
T ss_pred CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcC
Confidence 99999999999988999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred CcCcccchhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCC-------
Q 037792 164 NLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRIN------- 235 (558)
Q Consensus 164 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n------- 235 (558)
|.+.+..|..++.+++|+.|++++|.+.+..+..+ .+++|++|++++|.+.+..|..+..+++|+.|++++|
T Consensus 246 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~ 325 (968)
T PLN00113 246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP 325 (968)
T ss_pred ceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC
Confidence 99998999999999999999999999987665554 8899999999999999999999999999999999988
Q ss_pred ----CCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhccc---ccccccCccccccchh------
Q 037792 236 ----EHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNML---FSRVENGYLYGFDIVL------ 302 (558)
Q Consensus 236 ----~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~---~~~~~~~~~~~~~~~~------ 302 (558)
.+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..+. ...+..+.+.+..+..
T Consensus 326 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~ 405 (968)
T PLN00113 326 VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS 405 (968)
T ss_pred hhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCC
Confidence 357899999999999999999999999999999999999988888776543 2222333332222111
Q ss_pred --hhcccccccC-cccch------hhhhhccCCCc--------cccccceeeeeecccccc-cccc-hhhcccCEEEccC
Q 037792 303 --RMYLDDAYVS-NYYNS------TVELLLDGNDG--------RMLGALVAVNFMTKNRYE-SYKG-DILELMAGLDLSN 363 (558)
Q Consensus 303 --~~~~~~~~~~-~~~~~------~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-~~~~-~~l~~L~~L~Ls~ 363 (558)
...+..+... ..... +..+.+..+.. ...+....+. +..+... .++. ...++|+.|++++
T Consensus 406 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~-L~~n~~~~~~p~~~~~~~L~~L~ls~ 484 (968)
T PLN00113 406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLS-LARNKFFGGLPDSFGSKRLENLDLSR 484 (968)
T ss_pred CCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEE-CcCceeeeecCcccccccceEEECcC
Confidence 1111111110 00000 00000000000 0001111111 1111111 1111 0146799999999
Q ss_pred CCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCC
Q 037792 364 NELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIP 443 (558)
Q Consensus 364 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p 443 (558)
|++.+..|..+..+++|++|++++|.+++.+|+.+.++++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|
T Consensus 485 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 564 (968)
T PLN00113 485 NQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP 564 (968)
T ss_pred CccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred C-CcccCCCCcccccCCCCCCCCC
Q 037792 444 D-KEQFSTFDESSYRGNLFLCGPA 466 (558)
Q Consensus 444 ~-~~~~~~l~~~~~~~N~~~C~~~ 466 (558)
. ...+..+..+++++|++.+..|
T Consensus 565 ~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 565 KNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred hhHhcCcccCEEeccCCcceeeCC
Confidence 7 5667889999999999987554
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-42 Score=331.51 Aligned_cols=403 Identities=21% Similarity=0.239 Sum_probs=346.5
Q ss_pred CCcCCCcc-EEEccCCcCCCCC-----ChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHH
Q 037792 4 TSAQHGLH-SLDISRNSFSGKL-----PQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSL 77 (558)
Q Consensus 4 ~~~~~~L~-~L~l~~n~l~~~~-----p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 77 (558)
++.|+... .||++.+.+. .+ +..+ .+.-+.||+++|.+..+.+..|.++++|+.+++..|.++ .+|...
T Consensus 47 pa~c~c~~~lldcs~~~le-a~~~~~l~g~l---p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~ 121 (873)
T KOG4194|consen 47 PATCPCNTRLLDCSDRELE-AIDKSRLKGFL---PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFG 121 (873)
T ss_pred CCcCCCCceeeecCccccc-cccccccCCcC---ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccc
Confidence 45666554 4799999886 44 3222 246778999999999999999999999999999999999 898744
Q ss_pred HhcCCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCc
Q 037792 78 VINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQ 157 (558)
Q Consensus 78 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 157 (558)
....+|+.|+|.+|.|.....+.++.++.|+.|||+.|.|+.+....|..-.++++|+|++|.|+......|.++.+|.
T Consensus 122 -~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~ 200 (873)
T KOG4194|consen 122 -HESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLL 200 (873)
T ss_pred -ccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchhe
Confidence 4456799999999999988888999999999999999999987777888888999999999999999999999999999
Q ss_pred EEEcccCcCcccchhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCC-
Q 037792 158 ILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRIN- 235 (558)
Q Consensus 158 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n- 235 (558)
.|.|+.|+++...+..|..+++|+.|+|..|+|.......+ ++++|+.|.+..|.+......+|..+.++++|+++.|
T Consensus 201 tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~ 280 (873)
T KOG4194|consen 201 TLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR 280 (873)
T ss_pred eeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccch
Confidence 99999999998888889999999999999999987755445 8999999999999999888889999999999999999
Q ss_pred ----------CCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhc
Q 037792 236 ----------EHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMY 305 (558)
Q Consensus 236 ----------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~ 305 (558)
+++.|+.|++++|.|..+-+++...+++|++|+++.|+|+..-+..|..
T Consensus 281 l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~--------------------- 339 (873)
T KOG4194|consen 281 LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV--------------------- 339 (873)
T ss_pred hhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHH---------------------
Confidence 5788999999999999888889999999999999999998555555543
Q ss_pred ccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeec
Q 037792 306 LDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNL 385 (558)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 385 (558)
+..|++|.|++|.+.......|..+.+|++|||
T Consensus 340 -----------------------------------------------L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdL 372 (873)
T KOG4194|consen 340 -----------------------------------------------LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDL 372 (873)
T ss_pred -----------------------------------------------HHHhhhhcccccchHHHHhhHHHHhhhhhhhcC
Confidence 788999999999998777788999999999999
Q ss_pred cCCcCCccch---hhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCCCcccCCCCcccccCCCCC
Q 037792 386 SHNFLSGSIP---ESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFL 462 (558)
Q Consensus 386 s~N~l~~~~~---~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~N~~~ 462 (558)
++|.++..+- ..|.++++|+.|++.+|+|..+....|..++.|++|||.+|.|...-|..-.-..++.+.+..-.++
T Consensus 373 r~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssfl 452 (873)
T KOG4194|consen 373 RSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFL 452 (873)
T ss_pred cCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceE
Confidence 9999876543 4688999999999999999988888999999999999999999976666433346777778778889
Q ss_pred CCCCC----------------CCCCCCCCCCCCC
Q 037792 463 CGPAI----------------NKGCTNLPELLEP 480 (558)
Q Consensus 463 C~~~~----------------~~~c~~~~~~~~~ 480 (558)
|+|.+ ...|..|+.+.+.
T Consensus 453 CDCql~Wl~qWl~~~~lq~sv~a~CayPe~Lad~ 486 (873)
T KOG4194|consen 453 CDCQLKWLAQWLYRRKLQSSVIAKCAYPEPLADQ 486 (873)
T ss_pred EeccHHHHHHHHHhcccccceeeeccCCcccccc
Confidence 99953 2578888776543
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-40 Score=316.62 Aligned_cols=370 Identities=24% Similarity=0.280 Sum_probs=327.7
Q ss_pred ccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEc
Q 037792 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDL 89 (558)
Q Consensus 10 L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 89 (558)
-++||+++|.++ .+....|..+++|+.+++..|.++ .+|...+...+|+.|+|.+|.++ .+..+....++.|+.|||
T Consensus 80 t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 80 TQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDL 156 (873)
T ss_pred eeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhh
Confidence 467999999999 787777778999999999999999 77877777888999999999999 666666688999999999
Q ss_pred cCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCccc
Q 037792 90 SNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGN 169 (558)
Q Consensus 90 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (558)
+.|.|+.+..+.|..-.++++|+|++|.|+....+.|..+.+|..|.|+.|+++...+..|..+++|+.|+|..|++...
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 99999987777888889999999999999999899999999999999999999988888899999999999999999855
Q ss_pred chhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCC-----------CC
Q 037792 170 IPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRIN-----------EH 237 (558)
Q Consensus 170 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n-----------~~ 237 (558)
-.-.|+++++|+.|.+..|.|.......+ .+.++++|+|+.|+++..-..++.++++|+.|++++| -.
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence 56789999999999999999998888777 8999999999999999888899999999999999999 35
Q ss_pred CCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccch
Q 037792 238 SNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNS 317 (558)
Q Consensus 238 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (558)
++|+.|++++|+++...+++|..++.|++|++++|.++..-...|..
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~--------------------------------- 363 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG--------------------------------- 363 (873)
T ss_pred ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH---------------------------------
Confidence 78999999999999999999999999999999999986221112211
Q ss_pred hhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCC---CccccCccCCCeeeccCCcCCccc
Q 037792 318 TVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDI---PSEIGDLQNIHGLNLSHNFLSGSI 394 (558)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~Ls~N~l~~~~ 394 (558)
+++|++|||++|.++..+ ...|.++++|+.|++.+|++..+.
T Consensus 364 -----------------------------------lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~ 408 (873)
T KOG4194|consen 364 -----------------------------------LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP 408 (873)
T ss_pred -----------------------------------hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc
Confidence 889999999999987443 456889999999999999999777
Q ss_pred hhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCCCcccCCC
Q 037792 395 PESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTF 451 (558)
Q Consensus 395 ~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l 451 (558)
..+|.++++|++|||.+|.|..+-|..|..+ .|+.|-+..-.+.|.+.-.|..+++
T Consensus 409 krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl 464 (873)
T KOG4194|consen 409 KRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWL 464 (873)
T ss_pred hhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHHH
Confidence 7899999999999999999999999999999 8999999888888777765444433
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=281.99 Aligned_cols=397 Identities=28% Similarity=0.376 Sum_probs=279.7
Q ss_pred CcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCC
Q 037792 5 SAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSL 84 (558)
Q Consensus 5 ~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 84 (558)
..+..|++|++++|.+. ++|+.++. +..++.+++++|++. .+|+.+..+.+++.+++++|.+. ++++++ +.+..+
T Consensus 65 ~nL~~l~vl~~~~n~l~-~lp~aig~-l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i-~~~~~l 139 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNKLS-QLPAAIGE-LEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSI-GRLLDL 139 (565)
T ss_pred hcccceeEEEeccchhh-hCCHHHHH-HHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchH-HHHhhh
Confidence 35566777888888887 77777776 667777777777777 66777777777777777777777 666665 456666
Q ss_pred CEEEccCCccCccCchhhcCCCccCeeecccccccc----------------------ccchhhcCCCCCCEEEccCCcC
Q 037792 85 EWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSG----------------------KIKDGLLRSTELMVLDISNNRL 142 (558)
Q Consensus 85 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~----------------------~~~~~~~~l~~L~~L~L~~n~l 142 (558)
+.++..+|++. ..|+++.++.++..+++.+|++.. ..|..++.+.+|+-|++.+|++
T Consensus 140 ~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki 218 (565)
T KOG0472|consen 140 EDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKI 218 (565)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhccc
Confidence 66666666665 345555555555555555555443 3444455555555555555555
Q ss_pred CCCCcccccCCCCCcEEEcccCcCcccchhh-hcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhh
Q 037792 143 SGHIPSWMGNFSTLQILSMSKNLLEGNIPVQ-FNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTF 221 (558)
Q Consensus 143 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 221 (558)
. ..| .|.+|..|.++.++.|.+. .+|.. ..+++++..|+++.|++++.+.....+.+|+.||+++|.++ ..|..+
T Consensus 219 ~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is-~Lp~sL 294 (565)
T KOG0472|consen 219 R-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDIS-SLPYSL 294 (565)
T ss_pred c-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccc-cCCccc
Confidence 5 444 4556666666666666665 33333 34677777777877777777776666777778888888776 566667
Q ss_pred hCCCCCcEEEcCCC----------------------------------------------------CCCCcCEEEccCCc
Q 037792 222 FRGSALETLDLRIN----------------------------------------------------EHSNLRTLLLRGNY 249 (558)
Q Consensus 222 ~~~~~L~~L~l~~n----------------------------------------------------~~~~L~~L~l~~n~ 249 (558)
+++ .|+.|.+.+| .+.+.+.|++++-+
T Consensus 295 gnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q 373 (565)
T KOG0472|consen 295 GNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQ 373 (565)
T ss_pred ccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccc
Confidence 777 7777777777 22357788888888
Q ss_pred CCCCchhhccCCC--CCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCC
Q 037792 250 LQGPIPHQLCHLR--KLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGND 327 (558)
Q Consensus 250 l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (558)
++..+.+.|..-. -.+.++++.|++. ++|..+..+..... ...+.
T Consensus 374 lt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT------------~l~ls-------------------- 420 (565)
T KOG0472|consen 374 LTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVT------------DLVLS-------------------- 420 (565)
T ss_pred cccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHH------------HHHhh--------------------
Confidence 8865555554432 3778999999997 77765554321100 00000
Q ss_pred ccccccceeeeeecccccccccc---hhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccC
Q 037792 328 GRMLGALVAVNFMTKNRYESYKG---DILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMI 404 (558)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 404 (558)
+...++.+ ..+++|+.|++++|-+. .+|..++.+..|++|++|+|++. .+|++...+..+
T Consensus 421 ---------------nn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~l 483 (565)
T KOG0472|consen 421 ---------------NNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTL 483 (565)
T ss_pred ---------------cCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHH
Confidence 00001111 11788999999999888 78988999999999999999998 889999888899
Q ss_pred CeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCCCcccCCCCcccccCCCCC
Q 037792 405 ESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFL 462 (558)
Q Consensus 405 ~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~N~~~ 462 (558)
+.+-.++|++....|+.+.++..|+.||+.+|.+....|..+....+..+.+.|||+.
T Consensus 484 Etllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 484 ETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 9999999999988888899999999999999999988788888899999999999985
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-33 Score=274.67 Aligned_cols=356 Identities=26% Similarity=0.389 Sum_probs=263.7
Q ss_pred cCCCccEEEccCCcCC-CCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCC
Q 037792 6 AQHGLHSLDISRNSFS-GKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSL 84 (558)
Q Consensus 6 ~~~~L~~L~l~~n~l~-~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 84 (558)
-++-.+-.|+++|.++ +.+|.++-+ ++++++|.|...++. .+|+.++.+.+|++|.+++|+++ .+..++ ..++.|
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~q-Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGEL-s~Lp~L 80 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQ-MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGEL-SDLPRL 80 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHH-hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhh-ccchhh
Confidence 3455677899999998 578888877 889999999988888 78999999999999999999988 555555 678899
Q ss_pred CEEEccCCccCc-cCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEccc
Q 037792 85 EWLDLSNNNFVG-QIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSK 163 (558)
Q Consensus 85 ~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 163 (558)
+.+.+.+|++.. -+|..+..+..|+.|+|++|++. ..|..+...+++-.|+|++|+|..+....|.++..|-.|||++
T Consensus 81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence 999999888743 46778888999999999999987 6788888888999999999999866556677888899999999
Q ss_pred CcCcccchhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCcC-cccchhhhhCCCCCcEEEcCCCC-----
Q 037792 164 NLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNAL-GGSIPNTFFRGSALETLDLRINE----- 236 (558)
Q Consensus 164 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l-~~~~~~~~~~~~~L~~L~l~~n~----- 236 (558)
|++. .+|.....+..|++|.|++|.+...-...+ .+.+|+.|++++.+- ...+|..+..+.+|..+|++.|.
T Consensus 160 NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vP 238 (1255)
T KOG0444|consen 160 NRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVP 238 (1255)
T ss_pred chhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcch
Confidence 9988 566677888899999999998765433333 677888888888543 23567777776666666666663
Q ss_pred -----CCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhccccccc
Q 037792 237 -----HSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYV 311 (558)
Q Consensus 237 -----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (558)
+++|+.|++++|.++ ..........+|+.|+++.|+++ .+|++++.
T Consensus 239 ecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcK--------------------------- 289 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCK--------------------------- 289 (1255)
T ss_pred HHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhh---------------------------
Confidence 234555666666555 22333344455566666666655 45555544
Q ss_pred CcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCC-CCCccccCccCCCeeeccCCcC
Q 037792 312 SNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTG-DIPSEIGDLQNIHGLNLSHNFL 390 (558)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l 390 (558)
++.|+.|.+.+|++.- -+|..++.+.+|+++..++|.+
T Consensus 290 -----------------------------------------L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~L 328 (1255)
T KOG0444|consen 290 -----------------------------------------LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKL 328 (1255)
T ss_pred -----------------------------------------hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcccc
Confidence 5666677777777652 3566777777777777777777
Q ss_pred CccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCc
Q 037792 391 SGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLS 439 (558)
Q Consensus 391 ~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~ 439 (558)
. ..|+.+..+..|+.|.|++|++. .+|+.+.-++.|+.||++.|+=.
T Consensus 329 E-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 329 E-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred c-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 6 67777777777777777777776 56777777777777777777655
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-33 Score=275.50 Aligned_cols=359 Identities=25% Similarity=0.346 Sum_probs=309.1
Q ss_pred CCCccEEEccCCcCC-CCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCe
Q 037792 32 LPKLVYMNISKNSFE-GNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWA 110 (558)
Q Consensus 32 l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 110 (558)
+|-.+-.|+++|.++ +..|.....+.+++.|.|...++. .+|+++ +.+.+|++|.+++|++. .+...+..++.|+.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL-~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEEL-SRLQKLEHLSMAHNQLI-SVHGELSDLPRLRS 82 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHH-HHHhhhhhhhhhhhhhH-hhhhhhccchhhHH
Confidence 567788999999998 678999999999999999999998 899988 78999999999999987 45677899999999
Q ss_pred eeccccccc-cccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccc
Q 037792 111 LYLYNNNFS-GKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENN 189 (558)
Q Consensus 111 L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 189 (558)
+.+..|++. .-+|..+.++..|+.|||++|++. ..|..+..-.++-.|+|++|.|..+....|.++..|-.|+|++|+
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch
Confidence 999999876 346777889999999999999999 788888888899999999999996666667899999999999999
Q ss_pred cccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCC------------CCCCcCEEEccCCcCCCCchhh
Q 037792 190 LSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRIN------------EHSNLRTLLLRGNYLQGPIPHQ 257 (558)
Q Consensus 190 i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n------------~~~~L~~L~l~~n~l~~~~~~~ 257 (558)
+...++....+..|++|.|++|.+.-.--..+..+++|++|.+++. .+.+|..+|++.|.+. .+|+.
T Consensus 162 Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 162 LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 9999988889999999999999886444445556678888888876 4568889999999988 78899
Q ss_pred ccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceee
Q 037792 258 LCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAV 337 (558)
Q Consensus 258 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (558)
+..+++|+.|++++|+|+. +.....
T Consensus 241 ly~l~~LrrLNLS~N~ite-L~~~~~------------------------------------------------------ 265 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKITE-LNMTEG------------------------------------------------------ 265 (1255)
T ss_pred HhhhhhhheeccCcCceee-eeccHH------------------------------------------------------
Confidence 9999999999999999862 111111
Q ss_pred eeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCc-cchhhhhccccCCeEeCCCCcccc
Q 037792 338 NFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSG-SIPESFSNLKMIESLDLSHNKLNG 416 (558)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~i~~ 416 (558)
.-.+|++|++|+|+++ .+|+.++.++.|+.|.+.+|+++- -+|+.++.+.+|+.+..++|.+.
T Consensus 266 --------------~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE- 329 (1255)
T KOG0444|consen 266 --------------EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE- 329 (1255)
T ss_pred --------------HHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-
Confidence 1467899999999999 889999999999999999999764 37999999999999999999998
Q ss_pred cCchhcccCCCCCEEecCCCCCcCCCCCCcccCCCCcccccCCCCCCCCC
Q 037792 417 QIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGPA 466 (558)
Q Consensus 417 ~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~N~~~C~~~ 466 (558)
..|..+..+..|+.|.+++|++.+.......+..+..+++..||-+--+|
T Consensus 330 lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 330 LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred cCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 88999999999999999999999543336667788899999999877554
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-34 Score=264.43 Aligned_cols=349 Identities=26% Similarity=0.429 Sum_probs=204.8
Q ss_pred CccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEE
Q 037792 9 GLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLD 88 (558)
Q Consensus 9 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 88 (558)
+|+.+++++|.+. .+|++++. +-.+..++..+|+++ ..|.++.++.++..+++.+|.++ ..|+.... ++.|++|+
T Consensus 115 ~l~~l~~s~n~~~-el~~~i~~-~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld 189 (565)
T KOG0472|consen 115 SLVKLDCSSNELK-ELPDSIGR-LLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLD 189 (565)
T ss_pred hhhhhhcccccee-ecCchHHH-Hhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcc
Confidence 3444444444444 44444444 334444444444444 33444444444444444444444 33333322 44455555
Q ss_pred ccCCccCccCchhhcCCCccCeeecccccc----------------------ccccchhhcCCCCCCEEEccCCcCCCCC
Q 037792 89 LSNNNFVGQIFPNYMNLTRLWALYLYNNNF----------------------SGKIKDGLLRSTELMVLDISNNRLSGHI 146 (558)
Q Consensus 89 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i----------------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 146 (558)
...|-++ .+|+.++.+.+|..|++..|++ .....+...+++++..||+..|+++ ..
T Consensus 190 ~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~ 267 (565)
T KOG0472|consen 190 CNSNLLE-TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EV 267 (565)
T ss_pred cchhhhh-cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cC
Confidence 5444443 3444455555555555555554 4222223334555555555555555 45
Q ss_pred cccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccC-------------------------------
Q 037792 147 PSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMI------------------------------- 195 (558)
Q Consensus 147 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~------------------------------- 195 (558)
|+.+.-+.+|+.||+++|.++ ..|..++++ +|+.|.+.+|.+..+..
T Consensus 268 Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e 345 (565)
T KOG0472|consen 268 PDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTE 345 (565)
T ss_pred chHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccc
Confidence 555555555555555555555 445555555 55555555554321100
Q ss_pred -------CCc----CCCCccEEEccCCcCcccchhhhhCCCC---CcEEEcCCCCCC-----------CcCEEEccCCcC
Q 037792 196 -------STL----NLSSVEHLYLQNNALGGSIPNTFFRGSA---LETLDLRINEHS-----------NLRTLLLRGNYL 250 (558)
Q Consensus 196 -------~~~----~~~~L~~L~l~~n~l~~~~~~~~~~~~~---L~~L~l~~n~~~-----------~L~~L~l~~n~l 250 (558)
..+ ..-+.+.|++++-+++ ..|...+.... ....+++.|++. -++.+.+++|.+
T Consensus 346 ~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~i 424 (565)
T KOG0472|consen 346 TAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKI 424 (565)
T ss_pred ccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCcc
Confidence 000 1123344444444444 22322222211 445555555221 123344555555
Q ss_pred CCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccc
Q 037792 251 QGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRM 330 (558)
Q Consensus 251 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (558)
. .+|..++.+++|..|++++|.+. .+|..++.
T Consensus 425 s-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~---------------------------------------------- 456 (565)
T KOG0472|consen 425 S-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGS---------------------------------------------- 456 (565)
T ss_pred c-cchHHHHhhhcceeeecccchhh-hcchhhhh----------------------------------------------
Confidence 4 56667777888888888877765 55555443
Q ss_pred cccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCC
Q 037792 331 LGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLS 410 (558)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 410 (558)
+..|+.||+++|++. .+|+.+..+..++.+-.++|++....|+.+.++.+|..|||.
T Consensus 457 ----------------------lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~ 513 (565)
T KOG0472|consen 457 ----------------------LVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQ 513 (565)
T ss_pred ----------------------hhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccC
Confidence 566999999999999 889888888888888888999998888889999999999999
Q ss_pred CCcccccCchhcccCCCCCEEecCCCCCc
Q 037792 411 HNKLNGQIPPQLTELHSLSTFDVSYNNLS 439 (558)
Q Consensus 411 ~N~i~~~~~~~l~~l~~L~~L~l~~N~l~ 439 (558)
+|.+. .+|..++++++|++|+++||++.
T Consensus 514 nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 514 NNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred CCchh-hCChhhccccceeEEEecCCccC
Confidence 99998 78888999999999999999998
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-29 Score=257.64 Aligned_cols=412 Identities=28% Similarity=0.320 Sum_probs=261.4
Q ss_pred CCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCE
Q 037792 7 QHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEW 86 (558)
Q Consensus 7 ~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 86 (558)
+-+|+.||+++|.+. ..|..+.. +++|+.|.++.|.|. ..|.+..++.+|+++.|.+|.+. ..|.++ ..+++|+.
T Consensus 44 ~v~L~~l~lsnn~~~-~fp~~it~-l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~-~~lknl~~ 118 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQIS-SFPIQITL-LSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASI-SELKNLQY 118 (1081)
T ss_pred eeeeEEeeccccccc-cCCchhhh-HHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhH-Hhhhcccc
Confidence 334777777777776 67766665 667777777777666 45666677777777777777766 666665 56677777
Q ss_pred EEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcC
Q 037792 87 LDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLL 166 (558)
Q Consensus 87 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 166 (558)
|++++|.+. ..|..+..++.++.+..++|..... ++. ..++.+++..|.+.+.++..+..+.. .|+|.+|.+
T Consensus 119 LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~-~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~ 190 (1081)
T KOG0618|consen 119 LDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR----LGQ-TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEM 190 (1081)
T ss_pred cccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----hcc-ccchhhhhhhhhcccchhcchhhhhe--eeecccchh
Confidence 777777665 3455555555555555555511100 111 11444444444444444444433333 355555544
Q ss_pred cccchhhh-----------------cCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcE
Q 037792 167 EGNIPVQF-----------------NNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALET 229 (558)
Q Consensus 167 ~~~~~~~~-----------------~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 229 (558)
....-..+ -.-++|+.|+.++|.++... ..+...+|++++++.|+++ .+|+++..+.+|+.
T Consensus 191 ~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~-~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~ 268 (1081)
T KOG0618|consen 191 EVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLD-VHPVPLNLQYLDISHNNLS-NLPEWIGACANLEA 268 (1081)
T ss_pred hhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeec-cccccccceeeecchhhhh-cchHHHHhcccceE
Confidence 31100000 11256677777777776322 2234678999999999998 66799999999999
Q ss_pred EEcCCC----------CCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhccccc--cc---ccCc
Q 037792 230 LDLRIN----------EHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFS--RV---ENGY 294 (558)
Q Consensus 230 L~l~~n----------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~--~~---~~~~ 294 (558)
++...| ...+|+.|....|.+. -+|.....++.|+.|++..|++. ..|+.+...... +. ..+.
T Consensus 269 l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~ 346 (1081)
T KOG0618|consen 269 LNANHNRLVALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNK 346 (1081)
T ss_pred ecccchhHHhhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcc
Confidence 999998 3467888888889887 56767788899999999999996 566543332211 11 1111
Q ss_pred cccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccc
Q 037792 295 LYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEI 374 (558)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 374 (558)
+...+ .+.......+.++++-.+ .+...-+.-+. .+++|++|+|++|++.......+
T Consensus 347 l~~lp---------~~~e~~~~~Lq~LylanN------------~Ltd~c~p~l~--~~~hLKVLhLsyNrL~~fpas~~ 403 (1081)
T KOG0618|consen 347 LSTLP---------SYEENNHAALQELYLANN------------HLTDSCFPVLV--NFKHLKVLHLSYNRLNSFPASKL 403 (1081)
T ss_pred ccccc---------cccchhhHHHHHHHHhcC------------cccccchhhhc--cccceeeeeecccccccCCHHHH
Confidence 11111 000111111111111100 00000001111 17899999999999995555667
Q ss_pred cCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCC-CCCcccCCCCc
Q 037792 375 GDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPI-PDKEQFSTFDE 453 (558)
Q Consensus 375 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~-p~~~~~~~l~~ 453 (558)
.++..|++|+||+|+++ .+|+.+..++.|++|....|.+. ..| .+..++.|+.+|++.|+++... |.....+.++.
T Consensus 404 ~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~Lky 480 (1081)
T KOG0618|consen 404 RKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKY 480 (1081)
T ss_pred hchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccce
Confidence 88999999999999999 67899999999999999999998 566 7889999999999999998643 33333388999
Q ss_pred ccccCCCC
Q 037792 454 SSYRGNLF 461 (558)
Q Consensus 454 ~~~~~N~~ 461 (558)
++++||++
T Consensus 481 LdlSGN~~ 488 (1081)
T KOG0618|consen 481 LDLSGNTR 488 (1081)
T ss_pred eeccCCcc
Confidence 99999996
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-28 Score=249.03 Aligned_cols=351 Identities=31% Similarity=0.458 Sum_probs=230.0
Q ss_pred CcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCC
Q 037792 5 SAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSL 84 (558)
Q Consensus 5 ~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 84 (558)
....+|+.|+++.|.+. .+|..... +.+|+++.|.+|.+. ..|..+..+++|++|+++.|.+. .+|.-+ ..+..+
T Consensus 65 t~l~~L~~ln~s~n~i~-~vp~s~~~-~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i-~~lt~~ 139 (1081)
T KOG0618|consen 65 TLLSHLRQLNLSRNYIR-SVPSSCSN-MRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVI-EVLTAE 139 (1081)
T ss_pred hhHHHHhhcccchhhHh-hCchhhhh-hhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhH-HhhhHH
Confidence 35668888999999988 88866654 788999999988887 78888999999999999998886 555432 122222
Q ss_pred -------------------CEEEccCCccCccCchhhcCCCccCeeeccccccccccchh--------------------
Q 037792 85 -------------------EWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDG-------------------- 125 (558)
Q Consensus 85 -------------------~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~-------------------- 125 (558)
+.+++..|.+.+.++..+..++. .|++++|.+.......
T Consensus 140 ~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~ 217 (1081)
T KOG0618|consen 140 EELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEIS 217 (1081)
T ss_pred HHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhhccchhhhhhhhcccceEEec
Confidence 22333333332222222222222 3444444443110000
Q ss_pred -------------------hcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeecc
Q 037792 126 -------------------LLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNIS 186 (558)
Q Consensus 126 -------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 186 (558)
-....+|++++++.|++. .+|+++..+.+|+.++..+|.+. .+|..+..+.+|+.|.+.
T Consensus 218 g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~ 295 (1081)
T KOG0618|consen 218 GPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAA 295 (1081)
T ss_pred CcchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhh
Confidence 011234555555555555 34455555555555555555554 444444555555555555
Q ss_pred ccccccccCCCcCCCCccEEEccCCcCcccchhhhhC-CC-CCcEEEcCCC-----------CCCCcCEEEccCCcCCCC
Q 037792 187 ENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFR-GS-ALETLDLRIN-----------EHSNLRTLLLRGNYLQGP 253 (558)
Q Consensus 187 ~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~-~L~~L~l~~n-----------~~~~L~~L~l~~n~l~~~ 253 (558)
.|.+...++..-....|++|+|..|.+. ..|+.+.. .. +|+.+..+.| .++.|+.|++.+|.+++.
T Consensus 296 ~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~ 374 (1081)
T KOG0618|consen 296 YNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDS 374 (1081)
T ss_pred hhhhhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccccc
Confidence 5555554444435566666666666665 33332211 11 1333333333 346789999999999988
Q ss_pred chhhccCCCCCCEEEcccCcCccccChh-hhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccc
Q 037792 254 IPHQLCHLRKLGIMDISHNRLNGSIPAC-ITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLG 332 (558)
Q Consensus 254 ~~~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (558)
....+.+...|++|++++|++. .+|+. +.+
T Consensus 375 c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~k------------------------------------------------ 405 (1081)
T KOG0618|consen 375 CFPVLVNFKHLKVLHLSYNRLN-SFPASKLRK------------------------------------------------ 405 (1081)
T ss_pred chhhhccccceeeeeecccccc-cCCHHHHhc------------------------------------------------
Confidence 8888999999999999999996 45543 333
Q ss_pred cceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCC
Q 037792 333 ALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHN 412 (558)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 412 (558)
++.|+.|++|+|.++ .+|+....++.|++|...+|++. ..| .+..+++|+.+|++.|
T Consensus 406 --------------------le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N 462 (1081)
T KOG0618|consen 406 --------------------LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCN 462 (1081)
T ss_pred --------------------hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccc
Confidence 778899999999999 77899999999999999999998 677 7899999999999999
Q ss_pred ccccc-CchhcccCCCCCEEecCCCCC
Q 037792 413 KLNGQ-IPPQLTELHSLSTFDVSYNNL 438 (558)
Q Consensus 413 ~i~~~-~~~~l~~l~~L~~L~l~~N~l 438 (558)
+++.. +|.... -+.|++||++||.-
T Consensus 463 ~L~~~~l~~~~p-~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 463 NLSEVTLPEALP-SPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhhhhhhhCC-CcccceeeccCCcc
Confidence 99854 344333 38999999999984
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-27 Score=223.00 Aligned_cols=387 Identities=20% Similarity=0.219 Sum_probs=236.0
Q ss_pred CccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEccc-ccCCccchHHHHhcCCCCCEE
Q 037792 9 GLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSS-NNFAGELSQSLVINCFSLEWL 87 (558)
Q Consensus 9 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L 87 (558)
.-..++|..|.|+ .||+..|..+++||.||||+|.|+.+.|++|.+++.|..|-+-+ |+|+ .+|...|.++..++.|
T Consensus 68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRL 145 (498)
T ss_pred cceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHH
Confidence 4466899999998 89999998899999999999999989999999999888777766 8888 8999999999999999
Q ss_pred EccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCC------------CCCcccccCCCC
Q 037792 88 DLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLS------------GHIPSWMGNFST 155 (558)
Q Consensus 88 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~------------~~~~~~~~~l~~ 155 (558)
.+.-|++.......|..++++..|.+.+|.+..+....|..+..++.+.+..|.+- ...|..+++..-
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 99988888877888999999999999999988666668888888888888877621 112222333332
Q ss_pred CcEEEcccCcCcccch--------------------------hhhcCCcccceeeccccccccccCCCc-CCCCccEEEc
Q 037792 156 LQILSMSKNLLEGNIP--------------------------VQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYL 208 (558)
Q Consensus 156 L~~L~L~~n~l~~~~~--------------------------~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l 208 (558)
.....+.+.++..+.+ ..|..+++|++|++++|+++++....+ ....+++|.|
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 3323333332221111 234555555555555555555544444 4555555555
Q ss_pred cCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccc-cChhhhcccc
Q 037792 209 QNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGS-IPACITNMLF 287 (558)
Q Consensus 209 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~ 287 (558)
..|++......+|. ++.+|+.|++.+|+|+...|.+|..+..|.+|++-.|++.-. --.+++..-.
T Consensus 306 ~~N~l~~v~~~~f~-------------~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr 372 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQ-------------GLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLR 372 (498)
T ss_pred CcchHHHHHHHhhh-------------ccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHh
Confidence 55555433333333 457778888999999999999999999999999998877411 0122222110
Q ss_pred cc-cccCccccccch-hhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhccc-CEEEccCC
Q 037792 288 SR-VENGYLYGFDIV-LRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELM-AGLDLSNN 364 (558)
Q Consensus 288 ~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L-~~L~Ls~n 364 (558)
.. ...+.-.+.+.. ......+.....+... .+.+ . ....-...|. -.+.+ ++...|+.
T Consensus 373 ~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~--------~~ee-------~---~~~~s~~cP~-~c~c~~tVvRcSnk 433 (498)
T KOG4237|consen 373 KKSVVGNPRCQSPGFVRQIPISDVAFGDFRCG--------GPEE-------L---GCLTSSPCPP-PCTCLDTVVRCSNK 433 (498)
T ss_pred hCCCCCCCCCCCCchhccccchhccccccccC--------Cccc-------c---CCCCCCCCCC-CcchhhhhHhhccc
Confidence 00 000000000000 0000000000000000 0000 0 0000000000 01122 22345555
Q ss_pred CCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCC
Q 037792 365 ELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYN 436 (558)
Q Consensus 365 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N 436 (558)
.+. .+|..+. ..-++|.+.+|.++ .+|.. .+.+| .+|+++|+|+...-..|.++++|.+|-|++|
T Consensus 434 ~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 434 LLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred chh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 555 4443322 34567888888888 55554 55677 8888888888666677888888888888776
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-24 Score=241.24 Aligned_cols=297 Identities=24% Similarity=0.262 Sum_probs=168.3
Q ss_pred CCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEcc
Q 037792 59 LRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDIS 138 (558)
Q Consensus 59 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~ 138 (558)
|+.|.+.++.+. .+|..+ ...+|++|++.+|.+. ..+..+..+++|+.|+++++......|. +..+++|++|+++
T Consensus 591 Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~ 665 (1153)
T PLN03210 591 LRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLS 665 (1153)
T ss_pred cEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEec
Confidence 445555444444 444332 2344455555544443 2333444444555555544332222222 3444455555554
Q ss_pred CCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccch
Q 037792 139 NNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIP 218 (558)
Q Consensus 139 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 218 (558)
+|.....+|..+..+++|+.|++++|.....+|..+ ++++|+.|++++|......+.. ..+|+.|++++|.+. .+|
T Consensus 666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP 741 (1153)
T PLN03210 666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE-EFP 741 (1153)
T ss_pred CCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCccc-ccc
Confidence 444333444444444555555554443222333322 3444555555444322211111 234445555544443 223
Q ss_pred hhhhCCCCCcEEEcCCC------------------CCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccCh
Q 037792 219 NTFFRGSALETLDLRIN------------------EHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPA 280 (558)
Q Consensus 219 ~~~~~~~~L~~L~l~~n------------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 280 (558)
..+ .+++|+.|.+..+ .+++|+.|++++|...+.+|..++++++|+.|++++|...+.+|.
T Consensus 742 ~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~ 820 (1153)
T PLN03210 742 SNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT 820 (1153)
T ss_pred ccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC
Confidence 222 2334444433321 246889999999987778899999999999999999865444553
Q ss_pred hhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEE
Q 037792 281 CITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLD 360 (558)
Q Consensus 281 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 360 (558)
.+ + +++|+.|+
T Consensus 821 ~~-~--------------------------------------------------------------------L~sL~~L~ 831 (1153)
T PLN03210 821 GI-N--------------------------------------------------------------------LESLESLD 831 (1153)
T ss_pred CC-C--------------------------------------------------------------------ccccCEEE
Confidence 22 1 67788888
Q ss_pred ccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCC
Q 037792 361 LSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNL 438 (558)
Q Consensus 361 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l 438 (558)
+++|......|.. .++|++|+|++|.++ .+|..+..+++|+.|++++|+-...+|..+..+++|+.+++++|.-
T Consensus 832 Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 832 LSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred CCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 8887655455543 367888899998888 5788888888999999988554335666777888888888888853
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.5e-23 Score=233.47 Aligned_cols=331 Identities=19% Similarity=0.222 Sum_probs=235.2
Q ss_pred CCchhhhCCCCCCEEEcccccC------CccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccc
Q 037792 48 NIPSSIGKMQGLRLLDVSSNNF------AGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGK 121 (558)
Q Consensus 48 ~~~~~~~~l~~L~~L~L~~n~l------~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~ 121 (558)
..+.+|.++++|+.|.+..+.. ...+|.++..-..+|+.|++.++.+. ..|..| ...+|+.|++.+|.+. .
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~ 625 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-K 625 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-c
Confidence 3456788999999999976542 22456665333457999999999886 456666 5789999999999987 5
Q ss_pred cchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCCCcCCC
Q 037792 122 IKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLS 201 (558)
Q Consensus 122 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~ 201 (558)
.+..+..+++|+.|+++++.....+|. ++.+++|+.|++++|.....+|..++.+++|+.|++++|...+..+....++
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~ 704 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLK 704 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCC
Confidence 677788899999999998875556664 7889999999999987666889999999999999999975444444444789
Q ss_pred CccEEEccCCcCcccchhhhhCCCCCcEEEcCCCC---------CCCcCEEEccCCcCC-------CCchhhccCCCCCC
Q 037792 202 SVEHLYLQNNALGGSIPNTFFRGSALETLDLRINE---------HSNLRTLLLRGNYLQ-------GPIPHQLCHLRKLG 265 (558)
Q Consensus 202 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~---------~~~L~~L~l~~n~l~-------~~~~~~~~~l~~L~ 265 (558)
+|+.|++++|.....+|.. .++|+.|++++|. +++|+.|++.++... ...+......++|+
T Consensus 705 sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~ 781 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLT 781 (1153)
T ss_pred CCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccch
Confidence 9999999998765455532 2456666666552 234444555442211 01111122234566
Q ss_pred EEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeeccccc
Q 037792 266 IMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRY 345 (558)
Q Consensus 266 ~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (558)
.|++++|...+.+|..+.+
T Consensus 782 ~L~Ls~n~~l~~lP~si~~------------------------------------------------------------- 800 (1153)
T PLN03210 782 RLFLSDIPSLVELPSSIQN------------------------------------------------------------- 800 (1153)
T ss_pred heeCCCCCCccccChhhhC-------------------------------------------------------------
Confidence 6666666554455554433
Q ss_pred ccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccC
Q 037792 346 ESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTEL 425 (558)
Q Consensus 346 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l 425 (558)
+++|+.|++++|...+.+|... ++++|+.|++++|.....+|.. .++|+.|+|++|.+. .+|..+..+
T Consensus 801 -------L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l 868 (1153)
T PLN03210 801 -------LHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKF 868 (1153)
T ss_pred -------CCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcC
Confidence 7889999999986555677655 7899999999998765555543 368999999999998 678889999
Q ss_pred CCCCEEecCCCCCcCCCCC-CcccCCCCcccccC
Q 037792 426 HSLSTFDVSYNNLSGPIPD-KEQFSTFDESSYRG 458 (558)
Q Consensus 426 ~~L~~L~l~~N~l~~~~p~-~~~~~~l~~~~~~~ 458 (558)
++|+.|++++|+-...+|. ...++.+..+++.+
T Consensus 869 ~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~ 902 (1153)
T PLN03210 869 SNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSD 902 (1153)
T ss_pred CCCCEEECCCCCCcCccCcccccccCCCeeecCC
Confidence 9999999998543334443 44455565555554
|
syringae 6; Provisional |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4e-25 Score=205.89 Aligned_cols=332 Identities=21% Similarity=0.192 Sum_probs=222.3
Q ss_pred EEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccC-
Q 037792 61 LLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISN- 139 (558)
Q Consensus 61 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~- 139 (558)
..+.++-.++ ++|..+ .+.-..++|..|.|+.+.+.+|+.+++|+.|+|++|.|+.+.|++|.++++|..|-+.+
T Consensus 50 ~VdCr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 50 IVDCRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred eEEccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcC
Confidence 4555666666 777644 44667888888888887788888888899999999888888888888888887777766
Q ss_pred CcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCcCcccch
Q 037792 140 NRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIP 218 (558)
Q Consensus 140 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~ 218 (558)
|+|+......|.++..++.|.+.-|++..+..+.|..++++..|.+.+|.+..+....+ .+.+++.+++..|.+....
T Consensus 126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdC- 204 (498)
T KOG4237|consen 126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDC- 204 (498)
T ss_pred CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccc-
Confidence 88887777788888888888888888887788888889999999999888887777555 7788888888888753211
Q ss_pred hhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccc
Q 037792 219 NTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGF 298 (558)
Q Consensus 219 ~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~ 298 (558)
.++.+... +. ..|..++..+...-..+.+.++...-+..|..... +.
T Consensus 205 -----------------nL~wla~~-~a------~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~e---------sl 251 (498)
T KOG4237|consen 205 -----------------NLPWLADD-LA------MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLE---------SL 251 (498)
T ss_pred -----------------ccchhhhH-Hh------hchhhcccceecchHHHHHHHhcccchhhhhhhHH---------hH
Confidence 01111100 00 11112222233333333333332221222211000 00
Q ss_pred cchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCcc
Q 037792 299 DIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQ 378 (558)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 378 (558)
.......+..+...+... | +.+++|++|++++|.++.+-+.+|.+..
T Consensus 252 --~s~~~~~d~~d~~cP~~c-----------------------------f--~~L~~L~~lnlsnN~i~~i~~~aFe~~a 298 (498)
T KOG4237|consen 252 --PSRLSSEDFPDSICPAKC-----------------------------F--KKLPNLRKLNLSNNKITRIEDGAFEGAA 298 (498)
T ss_pred --HHhhccccCcCCcChHHH-----------------------------H--hhcccceEeccCCCccchhhhhhhcchh
Confidence 000000000000000000 0 1178888899999998888888888889
Q ss_pred CCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCCCcccCCCCcccccC
Q 037792 379 NIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRG 458 (558)
Q Consensus 379 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~ 458 (558)
++++|.|..|++.......|.++.+|+.|+|++|+|+...|..|+.+.+|.+|++-.|++.|.+.-.|.-.+++.....|
T Consensus 299 ~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~ 378 (498)
T KOG4237|consen 299 ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVG 378 (498)
T ss_pred hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCC
Confidence 99999999998886666788888999999999999988888889888899999998888887776655445555555566
Q ss_pred CCCCCC
Q 037792 459 NLFLCG 464 (558)
Q Consensus 459 N~~~C~ 464 (558)
||- |.
T Consensus 379 ~~~-Cq 383 (498)
T KOG4237|consen 379 NPR-CQ 383 (498)
T ss_pred CCC-CC
Confidence 663 44
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.1e-21 Score=201.17 Aligned_cols=40 Identities=25% Similarity=0.374 Sum_probs=17.3
Q ss_pred CCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCch
Q 037792 380 IHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPP 420 (558)
Q Consensus 380 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~ 420 (558)
|+.|++++|+++ .+|+.+..+++|+.|+|++|.+++..+.
T Consensus 424 L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 424 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred hhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 344444444444 3344444444444444444444443333
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-20 Score=198.94 Aligned_cols=268 Identities=25% Similarity=0.360 Sum_probs=204.6
Q ss_pred CCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEE
Q 037792 8 HGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWL 87 (558)
Q Consensus 8 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 87 (558)
.+-..|+++.+.++ .+|..+. ++|+.|++++|.++. +|. ..++|++|++++|+++ .+|. ..++|+.|
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L 267 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLEL 267 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccC----ccccccee
Confidence 34568999999999 8998775 489999999999984 554 3578999999999999 6774 24689999
Q ss_pred EccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCc
Q 037792 88 DLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLE 167 (558)
Q Consensus 88 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (558)
++++|.+.. +|.. ..+|+.|++++|.++. +|. .+++|+.|++++|.+++ +|... .+|+.|++++|.+.
T Consensus 268 ~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~ 335 (788)
T PRK15387 268 SIFSNPLTH-LPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLT 335 (788)
T ss_pred eccCCchhh-hhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCCc---ccccccccccCccc
Confidence 999998874 3332 3568899999999874 443 24789999999999984 44422 45888899999987
Q ss_pred ccchhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccC
Q 037792 168 GNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRG 247 (558)
Q Consensus 168 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~ 247 (558)
+ +|.. ..+|+.|++++|+++..+.. .++|+.|++++|.+.. +|.. .++|+.|++++
T Consensus 336 ~-LP~l---p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~-LP~l----------------~~~L~~LdLs~ 391 (788)
T PRK15387 336 S-LPTL---PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTS-LPAL----------------PSGLKELIVSG 391 (788)
T ss_pred c-cccc---ccccceEecCCCccCCCCCC---Ccccceehhhcccccc-Cccc----------------ccccceEEecC
Confidence 3 4532 24799999999999876542 3678889999998873 4421 24577788888
Q ss_pred CcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCC
Q 037792 248 NYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGND 327 (558)
Q Consensus 248 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (558)
|.+++ +|.. .++|+.|++++|++++ +|..
T Consensus 392 N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---------------------------------------------- 420 (788)
T PRK15387 392 NRLTS-LPVL---PSELKELMVSGNRLTS-LPML---------------------------------------------- 420 (788)
T ss_pred CcccC-CCCc---ccCCCEEEccCCcCCC-CCcc----------------------------------------------
Confidence 88874 4432 3679999999999873 4421
Q ss_pred ccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhcc
Q 037792 328 GRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNL 401 (558)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 401 (558)
+.+|+.|++++|+++ .+|..+..+++|+.|+|++|++++..+..+..+
T Consensus 421 -------------------------~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 421 -------------------------PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred -------------------------hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 345677999999999 789899999999999999999998877766443
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.5e-19 Score=190.73 Aligned_cols=202 Identities=20% Similarity=0.356 Sum_probs=104.2
Q ss_pred CccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEE
Q 037792 9 GLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLD 88 (558)
Q Consensus 9 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 88 (558)
+.+.|+++++.++ .+|..+. ++|+.|++++|.++ .+|..+. .+|++|++++|.++ .+|..+ ..+|+.|+
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip---~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l---~~~L~~L~ 247 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP---EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATL---PDTIQEME 247 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc---cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhh---hccccEEE
Confidence 3455666666665 5555442 35566666666665 3343332 35666666666555 455433 13455555
Q ss_pred ccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcc
Q 037792 89 LSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEG 168 (558)
Q Consensus 89 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (558)
+++|.+. .+|..+. .+|+.|++++|++. .+|..+. ++|+.|++++|+++
T Consensus 248 Ls~N~L~-~LP~~l~--------------------------s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt- 296 (754)
T PRK15370 248 LSINRIT-ELPERLP--------------------------SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR- 296 (754)
T ss_pred CcCCccC-cCChhHh--------------------------CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-
Confidence 5555554 2233221 24555555555554 2333222 34555555555555
Q ss_pred cchhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCC
Q 037792 169 NIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGN 248 (558)
Q Consensus 169 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n 248 (558)
.+|..+. ++|+.|++++|.++..+... .++|+.|++++|.+++ +|..+ .++|+.|++++|
T Consensus 297 ~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l---------------~~sL~~L~Ls~N 356 (754)
T PRK15370 297 TLPAHLP--SGITHLNVQSNSLTALPETL--PPGLKTLEAGENALTS-LPASL---------------PPELQVLDVSKN 356 (754)
T ss_pred cCcccch--hhHHHHHhcCCccccCCccc--cccceeccccCCcccc-CChhh---------------cCcccEEECCCC
Confidence 2332221 35666666666666543322 2566777777776653 33322 135556666666
Q ss_pred cCCCCchhhccCCCCCCEEEcccCcCc
Q 037792 249 YLQGPIPHQLCHLRKLGIMDISHNRLN 275 (558)
Q Consensus 249 ~l~~~~~~~~~~l~~L~~L~l~~n~l~ 275 (558)
.++ .+|..+. ++|+.|++++|+++
T Consensus 357 ~L~-~LP~~lp--~~L~~LdLs~N~Lt 380 (754)
T PRK15370 357 QIT-VLPETLP--PTITTLDVSRNALT 380 (754)
T ss_pred CCC-cCChhhc--CCcCEEECCCCcCC
Confidence 665 3444332 46777777777775
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.8e-19 Score=188.61 Aligned_cols=247 Identities=23% Similarity=0.361 Sum_probs=185.8
Q ss_pred CCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEE
Q 037792 57 QGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLD 136 (558)
Q Consensus 57 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 136 (558)
.+...|+++++.++ .+|..+ .++|+.|++++|+++. +|..+. ++|++|++++|.++. +|..+ .++|+.|+
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lts-LP~~l--~~~L~~L~ 247 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACI---PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLTS-IPATL--PDTIQEME 247 (754)
T ss_pred cCceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCcccc-CChhh--hccccEEE
Confidence 45678888888888 677654 3578889999998884 455443 588999999998874 45544 35799999
Q ss_pred ccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCccc
Q 037792 137 ISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGS 216 (558)
Q Consensus 137 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~ 216 (558)
+++|.+. .+|..+. .+|+.|++++|++. .+|..+. ++|+.|++++|.++..+... .++|+.|++++|.++.
T Consensus 248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l--p~sL~~L~Ls~N~Lt~- 318 (754)
T PRK15370 248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHL--PSGITHLNVQSNSLTA- 318 (754)
T ss_pred CcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCcccc--hhhHHHHHhcCCcccc-
Confidence 9999998 5666554 57999999999998 5666553 58999999999998765433 2579999999999973
Q ss_pred chhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccc
Q 037792 217 IPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLY 296 (558)
Q Consensus 217 ~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~ 296 (558)
+|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+
T Consensus 319 LP~~l---------------~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l-------------- 365 (754)
T PRK15370 319 LPETL---------------PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL-------------- 365 (754)
T ss_pred CCccc---------------cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--------------
Confidence 44322 2467777777787774 455553 68999999999986 344322
Q ss_pred cccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccC
Q 037792 297 GFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGD 376 (558)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 376 (558)
.++|+.|++++|.++ .+|..+.
T Consensus 366 --------------------------------------------------------p~~L~~LdLs~N~Lt-~LP~~l~- 387 (754)
T PRK15370 366 --------------------------------------------------------PPTITTLDVSRNALT-NLPENLP- 387 (754)
T ss_pred --------------------------------------------------------cCCcCEEECCCCcCC-CCCHhHH-
Confidence 457889999999998 5565554
Q ss_pred ccCCCeeeccCCcCCccchhh----hhccccCCeEeCCCCccc
Q 037792 377 LQNIHGLNLSHNFLSGSIPES----FSNLKMIESLDLSHNKLN 415 (558)
Q Consensus 377 l~~L~~L~Ls~N~l~~~~~~~----~~~l~~L~~L~Ls~N~i~ 415 (558)
..|+.|++++|+++ .+|+. +..++.+..|++.+|.++
T Consensus 388 -~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 388 -AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 47899999999998 44544 444588899999999987
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.76 E-value=4e-19 Score=175.81 Aligned_cols=86 Identities=23% Similarity=0.316 Sum_probs=48.1
Q ss_pred hcccCEEEccCCCCCCCCCcccc-----CccCCCeeeccCCcCCc----cchhhhhccccCCeEeCCCCccccc----Cc
Q 037792 353 LELMAGLDLSNNELTGDIPSEIG-----DLQNIHGLNLSHNFLSG----SIPESFSNLKMIESLDLSHNKLNGQ----IP 419 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~i~~~----~~ 419 (558)
+++|+.|++++|.+++.....+. ..+.|++|++++|.+++ .+...+..+++|+.+++++|.++.. ..
T Consensus 220 ~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~ 299 (319)
T cd00116 220 LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLA 299 (319)
T ss_pred cCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHH
Confidence 44556666666655532221111 13567777777777652 2234455556777777777777643 33
Q ss_pred hhcccC-CCCCEEecCCCCC
Q 037792 420 PQLTEL-HSLSTFDVSYNNL 438 (558)
Q Consensus 420 ~~l~~l-~~L~~L~l~~N~l 438 (558)
..+... +.|+.+++.+|++
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 300 ESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHhhcCCchhhcccCCCCC
Confidence 344444 5677777776654
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-18 Score=171.67 Aligned_cols=257 Identities=22% Similarity=0.243 Sum_probs=160.9
Q ss_pred EEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCC----CchhhhCCCCCCEEEcccccCCc------cchHHHHhcC
Q 037792 12 SLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGN----IPSSIGKMQGLRLLDVSSNNFAG------ELSQSLVINC 81 (558)
Q Consensus 12 ~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~~l 81 (558)
.|+|+++.+++.--..++..+++|++|+++++.++.. ++..+...+++++++++++.+.+ .++ ..+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~-~~l~~~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLL-QGLTKG 80 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHH-HHHHhc
Confidence 4677777776333334444477788888888887532 34456667778888888877652 112 233557
Q ss_pred CCCCEEEccCCccCccCchhhcCCCc---cCeeecccccccc----ccchhhcCC-CCCCEEEccCCcCCCC----Cccc
Q 037792 82 FSLEWLDLSNNNFVGQIFPNYMNLTR---LWALYLYNNNFSG----KIKDGLLRS-TELMVLDISNNRLSGH----IPSW 149 (558)
Q Consensus 82 ~~L~~L~l~~n~i~~~~~~~~~~l~~---L~~L~l~~n~i~~----~~~~~~~~l-~~L~~L~L~~n~l~~~----~~~~ 149 (558)
++|++|++++|.+.+..+..+..+.+ |++|++++|.+.. .....+..+ ++|+.|++++|.+++. .+..
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 78888888888876555555555544 8888888887763 222344555 7888888888887732 2334
Q ss_pred ccCCCCCcEEEcccCcCccc----chhhhcCCcccceeeccccccccccCCC----c-CCCCccEEEccCCcCcccchhh
Q 037792 150 MGNFSTLQILSMSKNLLEGN----IPVQFNNLASLQILNISENNLSGSMIST----L-NLSSVEHLYLQNNALGGSIPNT 220 (558)
Q Consensus 150 ~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~~~~~~----~-~~~~L~~L~l~~n~l~~~~~~~ 220 (558)
+..+++|+.|++++|.+.+. ++..+...++|+.|++++|.+.+..... + .+++|++|++++|.+++.....
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 56667888888888887632 2334455568888888888776432211 1 5677888888888876533333
Q ss_pred hhCCCCCcEEEcCCCCCCCcCEEEccCCcCCC----CchhhccCCCCCCEEEcccCcCccc
Q 037792 221 FFRGSALETLDLRINEHSNLRTLLLRGNYLQG----PIPHQLCHLRKLGIMDISHNRLNGS 277 (558)
Q Consensus 221 ~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~ 277 (558)
+... +. . ..+.|++|++++|.++. .+...+..+++|+++++++|.++..
T Consensus 241 l~~~--~~-----~-~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 241 LASA--LL-----S-PNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHHH--Hh-----c-cCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 2211 00 0 12556666666666652 2334455567777777777777643
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-18 Score=143.89 Aligned_cols=161 Identities=24% Similarity=0.376 Sum_probs=139.1
Q ss_pred CCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCee
Q 037792 32 LPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWAL 111 (558)
Q Consensus 32 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 111 (558)
+.+++.|.+|+|+++ ..|..+..+.+|++|++++|++. ++|..+ +.+++|+.|+++-|++. ..|..|+.++.|+.|
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~i-ssl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSI-SSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhh-hhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 678889999999998 56778889999999999999998 888887 67899999999988876 678899999999999
Q ss_pred eccccccc-cccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeecccccc
Q 037792 112 YLYNNNFS-GKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNL 190 (558)
Q Consensus 112 ~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i 190 (558)
|+.+|++. ...|+.|..+..|+-|++++|.+. .+|..++++++|+.|.+..|.+. .+|..++.+..|++|.+.+|++
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 99988876 356788888889999999999998 77888899999999999999887 7888899999999999999998
Q ss_pred ccccCCCc
Q 037792 191 SGSMISTL 198 (558)
Q Consensus 191 ~~~~~~~~ 198 (558)
+..++...
T Consensus 186 ~vlppel~ 193 (264)
T KOG0617|consen 186 TVLPPELA 193 (264)
T ss_pred eecChhhh
Confidence 87776544
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.3e-18 Score=142.96 Aligned_cols=164 Identities=30% Similarity=0.495 Sum_probs=148.4
Q ss_pred cCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCC
Q 037792 6 AQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLE 85 (558)
Q Consensus 6 ~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 85 (558)
.+.+++.|.+|+|.++ .+|+.+.. +.+|+.|++++|+|+ .+|.+++.+++|+.|+++-|++. ..|.++ +.++.|+
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~-l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgf-gs~p~le 105 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAE-LKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGF-GSFPALE 105 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHH-hhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcccc-CCCchhh
Confidence 5677889999999999 99999987 899999999999999 78999999999999999999998 788876 8899999
Q ss_pred EEEccCCccCc-cCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccC
Q 037792 86 WLDLSNNNFVG-QIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKN 164 (558)
Q Consensus 86 ~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 164 (558)
.||+.+|++.. ..|..|..++.|+-|++++|.+. ..|..++++++|+.|.+..|.+. ..|..++.+..|++|.+.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 99999998865 56788999999999999999997 67888999999999999999998 78999999999999999999
Q ss_pred cCcccchhhhcCC
Q 037792 165 LLEGNIPVQFNNL 177 (558)
Q Consensus 165 ~l~~~~~~~~~~l 177 (558)
+++ .+|..++++
T Consensus 184 rl~-vlppel~~l 195 (264)
T KOG0617|consen 184 RLT-VLPPELANL 195 (264)
T ss_pred eee-ecChhhhhh
Confidence 999 666555543
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-14 Score=153.44 Aligned_cols=118 Identities=36% Similarity=0.603 Sum_probs=105.9
Q ss_pred ccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecC
Q 037792 355 LMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVS 434 (558)
Q Consensus 355 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~ 434 (558)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+++.+|..++.+++|+.|+|++|.+++.+|..+.++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCCCCCC--cccCCCCcccccCCCCCCCCCCCCCCC
Q 037792 435 YNNLSGPIPDK--EQFSTFDESSYRGNLFLCGPAINKGCT 472 (558)
Q Consensus 435 ~N~l~~~~p~~--~~~~~l~~~~~~~N~~~C~~~~~~~c~ 472 (558)
+|+++|.+|.. ..+..+..+++.+|+..|+.+....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 99999999972 223345677899999999877555563
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.3e-11 Score=129.65 Aligned_cols=92 Identities=33% Similarity=0.560 Sum_probs=84.9
Q ss_pred hcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccC-CCCCEE
Q 037792 353 LELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTEL-HSLSTF 431 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l-~~L~~L 431 (558)
+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+++.+|+.++++++|+.|+|++|.+++.+|..+... .++..+
T Consensus 441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l 520 (623)
T PLN03150 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520 (623)
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence 7889999999999999999999999999999999999999999999999999999999999999999988764 467899
Q ss_pred ecCCCCCcCCCCC
Q 037792 432 DVSYNNLSGPIPD 444 (558)
Q Consensus 432 ~l~~N~l~~~~p~ 444 (558)
++.+|+..|.+|.
T Consensus 521 ~~~~N~~lc~~p~ 533 (623)
T PLN03150 521 NFTDNAGLCGIPG 533 (623)
T ss_pred EecCCccccCCCC
Confidence 9999998876553
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.4e-13 Score=131.73 Aligned_cols=191 Identities=27% Similarity=0.349 Sum_probs=157.7
Q ss_pred ccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEc
Q 037792 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDL 89 (558)
Q Consensus 10 L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 89 (558)
-...|++.|.+. .+|..+.. +..|+.+.+.+|.+. .+|.++.++..|++++++.|++. .+|..+ ..++ |+.|-+
T Consensus 77 t~~aDlsrNR~~-elp~~~~~-f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~l-C~lp-Lkvli~ 150 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACA-FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGL-CDLP-LKVLIV 150 (722)
T ss_pred hhhhhccccccc-cCchHHHH-HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhh-hcCc-ceeEEE
Confidence 345799999998 99988876 778999999999998 78899999999999999999998 788877 4454 899999
Q ss_pred cCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCccc
Q 037792 90 SNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGN 169 (558)
Q Consensus 90 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (558)
++|+++ .+|..++..+.|..|+.+.|.+. ..|..++.+.+|+.|.+..|++. ..|..+..+ .|..||++.|++. .
T Consensus 151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~ 225 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-Y 225 (722)
T ss_pred ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-e
Confidence 999998 57788888899999999999997 57788889999999999999998 456666654 4889999999998 7
Q ss_pred chhhhcCCcccceeeccccccccccCCCc---CCCCccEEEccCC
Q 037792 170 IPVQFNNLASLQILNISENNLSGSMISTL---NLSSVEHLYLQNN 211 (558)
Q Consensus 170 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~---~~~~L~~L~l~~n 211 (558)
+|-.|..|+.|++|.|.+|.+..-+.... ...--++|+..-+
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred cchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 89999999999999999999886544433 2223456666555
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.7e-11 Score=107.03 Aligned_cols=108 Identities=28% Similarity=0.350 Sum_probs=27.8
Q ss_pred CCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCE
Q 037792 7 QHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEW 86 (558)
Q Consensus 7 ~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 86 (558)
+.++++|+|++|.|+ .+. .+...+.+|+.|++++|.|+.. +.+..+++|++|++++|+++ .+.+.+...+++|++
T Consensus 18 ~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred ccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCE
Confidence 345566666666665 443 3333355666666666666533 23555666666666666665 444333334566666
Q ss_pred EEccCCccCccC-chhhcCCCccCeeeccccccc
Q 037792 87 LDLSNNNFVGQI-FPNYMNLTRLWALYLYNNNFS 119 (558)
Q Consensus 87 L~l~~n~i~~~~-~~~~~~l~~L~~L~l~~n~i~ 119 (558)
|++++|+|.... ...+..+++|+.|++.+|.+.
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 666666654311 123444555555555555544
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.9e-12 Score=123.50 Aligned_cols=183 Identities=25% Similarity=0.169 Sum_probs=98.2
Q ss_pred CCCccEEEccCCcCCCCCc-hhhhCCCCCCEEEcccccCCcc-chHHHHhcCCCCCEEEccCCccCccCch-hhcCCCcc
Q 037792 32 LPKLVYMNISKNSFEGNIP-SSIGKMQGLRLLDVSSNNFAGE-LSQSLVINCFSLEWLDLSNNNFVGQIFP-NYMNLTRL 108 (558)
Q Consensus 32 l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~-~~~~l~~L 108 (558)
+.+|+...|.++.+..... .....+++++.|||+.|-+..- .-..+...+++|+.|+++.|++...... .-..++.|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 4566666666665542111 2455566666666666655421 1123445566666666666665421111 11245566
Q ss_pred Ceeeccccccccccc-hhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccc-hhhhcCCcccceeecc
Q 037792 109 WALYLYNNNFSGKIK-DGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNI-PVQFNNLASLQILNIS 186 (558)
Q Consensus 109 ~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~ 186 (558)
+.|.++.|.++.... .....+|+|+.|++..|...........-+..|+.|+|++|.+.+.. ....+.++.|+.|+++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence 666676666653222 12334567777777766422222222333456777777777654221 1234566777777777
Q ss_pred ccccccccC-CC------cCCCCccEEEccCCcCc
Q 037792 187 ENNLSGSMI-ST------LNLSSVEHLYLQNNALG 214 (558)
Q Consensus 187 ~n~i~~~~~-~~------~~~~~L~~L~l~~n~l~ 214 (558)
.+.+..+.. .. ..+++|++|++..|++.
T Consensus 280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 280 STGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred ccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 776654321 11 14677777777777774
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-11 Score=115.08 Aligned_cols=236 Identities=22% Similarity=0.305 Sum_probs=155.9
Q ss_pred CCCccEEEccCCcCCCC----CchhhhCCCCCCEEEccccc---CCccchHHH------HhcCCCCCEEEccCCccCccC
Q 037792 32 LPKLVYMNISKNSFEGN----IPSSIGKMQGLRLLDVSSNN---FAGELSQSL------VINCFSLEWLDLSNNNFVGQI 98 (558)
Q Consensus 32 l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~------~~~l~~L~~L~l~~n~i~~~~ 98 (558)
...++.+++|+|.+... +.+.+.+.++|+..++++-. ....+|+.+ ...+++|++|+||.|.+....
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 56677777777777522 23445666777777776532 122344321 235668888888888776555
Q ss_pred chh----hcCCCccCeeeccccccccccch-------------hhcCCCCCCEEEccCCcCCCCC----cccccCCCCCc
Q 037792 99 FPN----YMNLTRLWALYLYNNNFSGKIKD-------------GLLRSTELMVLDISNNRLSGHI----PSWMGNFSTLQ 157 (558)
Q Consensus 99 ~~~----~~~l~~L~~L~l~~n~i~~~~~~-------------~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~ 157 (558)
++. +.++..|++|.|.+|.+.-.... ...+.+.|+.+..++|++.... ...|...+.|+
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 443 35677888888888877522111 1234578999999999887432 24566678899
Q ss_pred EEEcccCcCccc----chhhhcCCcccceeeccccccccccCCC----c-CCCCccEEEccCCcCcccchhhhhCCCCCc
Q 037792 158 ILSMSKNLLEGN----IPVQFNNLASLQILNISENNLSGSMIST----L-NLSSVEHLYLQNNALGGSIPNTFFRGSALE 228 (558)
Q Consensus 158 ~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~~~~~~----~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 228 (558)
.+.+..|.+... ....+..+++|+.|++.+|.++...... + .++.|+.|++++|.+......++... ++
T Consensus 189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a--l~ 266 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA--LK 266 (382)
T ss_pred eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH--Hh
Confidence 999999887532 3355788899999999999876432211 1 56789999999998876555444321 00
Q ss_pred EEEcCCCCCCCcCEEEccCCcCCCC----chhhccCCCCCCEEEcccCcCc
Q 037792 229 TLDLRINEHSNLRTLLLRGNYLQGP----IPHQLCHLRKLGIMDISHNRLN 275 (558)
Q Consensus 229 ~L~l~~n~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~ 275 (558)
...|+|+.+.+.+|.++.. +...+...+.|..|++++|.+.
T Consensus 267 ------~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 267 ------ESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ------ccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 0357888888888888732 2334566788999999999883
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.6e-11 Score=121.08 Aligned_cols=172 Identities=28% Similarity=0.335 Sum_probs=107.4
Q ss_pred EEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCC-CCCEEEccCCccCccCchhhcCCCccCeeeccc
Q 037792 37 YMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCF-SLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYN 115 (558)
Q Consensus 37 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 115 (558)
.++++.+.+. .....+..+..++.|++.+|.++ .++... .... +|+.|++++|.+.. ++..+..+++|+.|++++
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~-~~~~~nL~~L~l~~N~i~~-l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLI-GLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCcccc-ccchhhcccccccccchhh-hhhhhhccccccccccCC
Confidence 4666666653 22334555566777777777777 565544 3342 67777777777763 335567777777777777
Q ss_pred cccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccC
Q 037792 116 NNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMI 195 (558)
Q Consensus 116 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 195 (558)
|++.. .+......+.|+.|++++|++. .+|........|+++.+++|.+. ..+..+..+.++..+.+.+|++...+.
T Consensus 173 N~l~~-l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~ 249 (394)
T COG4886 173 NDLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPE 249 (394)
T ss_pred chhhh-hhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccc
Confidence 77763 3333336677777777777777 44544444455777777777543 344556666777777777777665433
Q ss_pred CCcCCCCccEEEccCCcCcc
Q 037792 196 STLNLSSVEHLYLQNNALGG 215 (558)
Q Consensus 196 ~~~~~~~L~~L~l~~n~l~~ 215 (558)
....+++++.|++++|.++.
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISS 269 (394)
T ss_pred hhccccccceeccccccccc
Confidence 33356667777777777763
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.1e-12 Score=126.96 Aligned_cols=171 Identities=33% Similarity=0.396 Sum_probs=114.1
Q ss_pred CCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEE
Q 037792 56 MQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVL 135 (558)
Q Consensus 56 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 135 (558)
+..-...|++.|++. ++|..+ ..+..|+.+.+.+|.+. .+|..+.++..|+.|+++.|.++ ..|..+..++ |+.|
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~-~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvl 148 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEA-CAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVL 148 (722)
T ss_pred ccchhhhhccccccc-cCchHH-HHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeE
Confidence 334456677777776 666665 45566777777777666 45667777777777777777776 4555554444 6777
Q ss_pred EccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcc
Q 037792 136 DISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGG 215 (558)
Q Consensus 136 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~ 215 (558)
-+++|+++ .+|..++..+.|..|+.+.|.+. .+|..++++.+|+.|++..|++...+.....+ .|..||++.|++.
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis- 224 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKIS- 224 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCcee-
Confidence 77777777 66666777777777777777776 56666777777777777777777666655533 4677777777776
Q ss_pred cchhhhhCCCCCcEEEcCCC
Q 037792 216 SIPNTFFRGSALETLDLRIN 235 (558)
Q Consensus 216 ~~~~~~~~~~~L~~L~l~~n 235 (558)
.+|-.|..++.|++|.|.+|
T Consensus 225 ~iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred ecchhhhhhhhheeeeeccC
Confidence 66666666555554444444
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1e-11 Score=115.47 Aligned_cols=238 Identities=20% Similarity=0.268 Sum_probs=169.5
Q ss_pred CCcCCCccEEEccCCcCCCC----CChhhhhcCCCccEEEccCC---cCCCCCc-------hhhhCCCCCCEEEcccccC
Q 037792 4 TSAQHGLHSLDISRNSFSGK----LPQNMGIVLPKLVYMNISKN---SFEGNIP-------SSIGKMQGLRLLDVSSNNF 69 (558)
Q Consensus 4 ~~~~~~L~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~Ls~n---~i~~~~~-------~~~~~l~~L~~L~L~~n~l 69 (558)
...+..++.+++|+|.+.-. +...+. +.++|+..++++- +....+| .++.++++|++|+||+|-+
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~-~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLA-SKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHh-hcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 45678999999999998522 222233 3578888888863 2222333 3456778999999999988
Q ss_pred CccchH---HHHhcCCCCCEEEccCCccCccCch-------------hhcCCCccCeeeccccccccc----cchhhcCC
Q 037792 70 AGELSQ---SLVINCFSLEWLDLSNNNFVGQIFP-------------NYMNLTRLWALYLYNNNFSGK----IKDGLLRS 129 (558)
Q Consensus 70 ~~~~~~---~~~~~l~~L~~L~l~~n~i~~~~~~-------------~~~~l~~L~~L~l~~n~i~~~----~~~~~~~l 129 (558)
....++ .++..+..|++|.|.+|.+...... ...+-++|+.+...+|++... ....|...
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH 184 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence 643333 3456788999999999987632211 234567899999999998643 23456777
Q ss_pred CCCCEEEccCCcCCCC----CcccccCCCCCcEEEcccCcCccc----chhhhcCCcccceeeccccccccccCCCc---
Q 037792 130 TELMVLDISNNRLSGH----IPSWMGNFSTLQILSMSKNLLEGN----IPVQFNNLASLQILNISENNLSGSMISTL--- 198 (558)
Q Consensus 130 ~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~~~~~~~--- 198 (558)
+.|+.+.++.|.|... ....+..+++|+.|||.+|.++.. +.+.+..+++|+.|++++|.+.......+
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a 264 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA 264 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence 9999999999988632 234577899999999999988643 34567788899999999999876443332
Q ss_pred ---CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCC
Q 037792 199 ---NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQ 251 (558)
Q Consensus 199 ---~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~ 251 (558)
..|+|+.|.+.+|.++......+..+ .+..+.|..|++++|.+.
T Consensus 265 l~~~~p~L~vl~l~gNeIt~da~~~la~~---------~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 265 LKESAPSLEVLELAGNEITRDAALALAAC---------MAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HhccCCCCceeccCcchhHHHHHHHHHHH---------HhcchhhHHhcCCccccc
Confidence 57899999999999975443333221 113567777777778773
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.3e-11 Score=119.84 Aligned_cols=200 Identities=30% Similarity=0.400 Sum_probs=156.7
Q ss_pred EEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCC-CCCEEEcccccCCccchHHHHhcCCCCCEEEcc
Q 037792 12 SLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQ-GLRLLDVSSNNFAGELSQSLVINCFSLEWLDLS 90 (558)
Q Consensus 12 ~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~ 90 (558)
.+++..+.+. .-+..+.. ++.++.|++.+|.++ .++....... +|+.|++++|.+. .+|..+ ..+++|+.|+++
T Consensus 97 ~l~~~~~~~~-~~~~~~~~-~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~-~~l~~L~~L~l~ 171 (394)
T COG4886 97 SLDLNLNRLR-SNISELLE-LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPL-RNLPNLKNLDLS 171 (394)
T ss_pred eeeccccccc-cCchhhhc-ccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhh-hccccccccccC
Confidence 5777777774 23333333 578999999999998 5565666664 8999999999998 675444 789999999999
Q ss_pred CCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccc
Q 037792 91 NNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNI 170 (558)
Q Consensus 91 ~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 170 (558)
+|++.. ++......++|+.|++++|.+. .+|.....+..|+++.+++|.+. ..+..+..+.++..+.+.+|++. ..
T Consensus 172 ~N~l~~-l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~ 247 (394)
T COG4886 172 FNDLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DL 247 (394)
T ss_pred Cchhhh-hhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-ec
Confidence 999984 4555558899999999999998 45555455677999999999655 45666788888999999999887 34
Q ss_pred hhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhh
Q 037792 171 PVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTF 221 (558)
Q Consensus 171 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 221 (558)
+..++.+++++.|++++|.++.... .....+++.|+++++.+....+...
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred cchhccccccceecccccccccccc-ccccCccCEEeccCccccccchhhh
Confidence 6778888999999999999988766 4478899999999999886666544
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.1e-11 Score=114.58 Aligned_cols=211 Identities=22% Similarity=0.228 Sum_probs=154.7
Q ss_pred CcCCCccEEEccCCcCCCCCCh-hhhhcCCCccEEEccCCcCCCCC--chhhhCCCCCCEEEcccccCCccchHHHHhcC
Q 037792 5 SAQHGLHSLDISRNSFSGKLPQ-NMGIVLPKLVYMNISKNSFEGNI--PSSIGKMQGLRLLDVSSNNFAGELSQSLVINC 81 (558)
Q Consensus 5 ~~~~~L~~L~l~~n~l~~~~p~-~~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l 81 (558)
+++++|+.+.|.+..+. ..+. .....|++++.||||+|-+.... ..-...+++|+.|+++.|++........-..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 46778899999998886 4442 34445999999999999776332 23467899999999999998744444444567
Q ss_pred CCCCEEEccCCccCcc-CchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCC-cccccCCCCCcEE
Q 037792 82 FSLEWLDLSNNNFVGQ-IFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHI-PSWMGNFSTLQIL 159 (558)
Q Consensus 82 ~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L 159 (558)
++|+.|.++.|.++-. +......+|+|+.|++..|...........-+..|++|+|++|.+.... -...+.++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 8999999999988732 2224567899999999999533333344455789999999999887432 1346778999999
Q ss_pred EcccCcCcccc-hhh-----hcCCcccceeeccccccccc--cCCCcCCCCccEEEccCCcCccc
Q 037792 160 SMSKNLLEGNI-PVQ-----FNNLASLQILNISENNLSGS--MISTLNLSSVEHLYLQNNALGGS 216 (558)
Q Consensus 160 ~L~~n~l~~~~-~~~-----~~~l~~L~~L~L~~n~i~~~--~~~~~~~~~L~~L~l~~n~l~~~ 216 (558)
+++.+++..+- |+. ...+++|+.|++..|+|.+. ......+++|+.|.+..|.+...
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 99999887432 222 24578999999999999543 22333678899999888888643
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.3e-10 Score=101.46 Aligned_cols=85 Identities=31% Similarity=0.273 Sum_probs=19.9
Q ss_pred CCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCc-ccccCCCCCcEE
Q 037792 81 CFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIP-SWMGNFSTLQIL 159 (558)
Q Consensus 81 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L 159 (558)
+.+|+.|++++|.|.. ...+..+++|++|++++|.++.........+++|++|++++|++..... ..+..+++|+.|
T Consensus 41 l~~L~~L~Ls~N~I~~--l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITK--LEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp -TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred hcCCCEEECCCCCCcc--ccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence 3344444444444432 1233344444444444444442211111234444444444444432111 223334444444
Q ss_pred EcccCcCc
Q 037792 160 SMSKNLLE 167 (558)
Q Consensus 160 ~L~~n~l~ 167 (558)
++.+|++.
T Consensus 119 ~L~~NPv~ 126 (175)
T PF14580_consen 119 SLEGNPVC 126 (175)
T ss_dssp E-TT-GGG
T ss_pred eccCCccc
Confidence 44444443
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.9e-11 Score=109.09 Aligned_cols=130 Identities=28% Similarity=0.314 Sum_probs=91.0
Q ss_pred CCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccch
Q 037792 238 SNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNS 317 (558)
Q Consensus 238 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (558)
..|+++|+++|.++ .+.++..-.|+++.|++++|.+.... .+..
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~--------------------------------- 327 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAE--------------------------------- 327 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhh---------------------------------
Confidence 56777888888877 45666777788888888888775110 0111
Q ss_pred hhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhh
Q 037792 318 TVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPES 397 (558)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 397 (558)
+++|+.||+|+|.++ .+..+-..+-+.+.|.|++|.|.. -+.
T Consensus 328 -----------------------------------L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSG 369 (490)
T KOG1259|consen 328 -----------------------------------LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSG 369 (490)
T ss_pred -----------------------------------cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhh
Confidence 677888888888877 444445567778888888888763 245
Q ss_pred hhccccCCeEeCCCCcccccC-chhcccCCCCCEEecCCCCCcCC
Q 037792 398 FSNLKMIESLDLSHNKLNGQI-PPQLTELHSLSTFDVSYNNLSGP 441 (558)
Q Consensus 398 ~~~l~~L~~L~Ls~N~i~~~~-~~~l~~l~~L~~L~l~~N~l~~~ 441 (558)
++.+=+|..||+++|+|.... -..++++|-|+++.+.+|++.+.
T Consensus 370 L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 370 LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 667778888888888886322 33577788888888888888743
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.6e-11 Score=109.37 Aligned_cols=128 Identities=29% Similarity=0.327 Sum_probs=98.8
Q ss_pred CCCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEc
Q 037792 82 FSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSM 161 (558)
Q Consensus 82 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 161 (558)
..|+++|+++|.|+ .+..+..-.|.++.|++++|.+..+ +.+..+++|+.||+++|.++ .+..+-..+.+.+.|.|
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 35888999998887 4566777888899999999988743 44778889999999998887 44555566788889999
Q ss_pred ccCcCcccchhhhcCCcccceeeccccccccccC--CCcCCCCccEEEccCCcCcc
Q 037792 162 SKNLLEGNIPVQFNNLASLQILNISENNLSGSMI--STLNLSSVEHLYLQNNALGG 215 (558)
Q Consensus 162 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~~~~~L~~L~l~~n~l~~ 215 (558)
++|.+.+. ..+..+-+|..|++++|+|..... ...++|.|+++.+.+|.+.+
T Consensus 360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 360 AQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 99888632 346777788999999998876432 23378899999999998874
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.2e-10 Score=121.33 Aligned_cols=130 Identities=29% Similarity=0.324 Sum_probs=99.1
Q ss_pred CcCCCccEEEccCCc--CCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCC
Q 037792 5 SAQHGLHSLDISRNS--FSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCF 82 (558)
Q Consensus 5 ~~~~~L~~L~l~~n~--l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 82 (558)
..++.|++|-+..|. +. .++..+|..+|.|++||+++|.--+.+|..++++.+||+|++++..+. .+|..+ .+++
T Consensus 542 ~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l-~~Lk 618 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGL-GNLK 618 (889)
T ss_pred CCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHH-HHHH
Confidence 456678898888886 55 788888888999999999988766688999999999999999999998 888887 7889
Q ss_pred CCCEEEccCCccCccCchhhcCCCccCeeeccccccc--cccchhhcCCCCCCEEEc
Q 037792 83 SLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFS--GKIKDGLLRSTELMVLDI 137 (558)
Q Consensus 83 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~--~~~~~~~~~l~~L~~L~L 137 (558)
+|.+|++..+......+.....+++|++|.+...... ......+..+.+|+.+..
T Consensus 619 ~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 619 KLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 9999999887765555666677999999988765421 122233344455555544
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.1e-10 Score=82.37 Aligned_cols=61 Identities=44% Similarity=0.629 Sum_probs=42.8
Q ss_pred cCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCC
Q 037792 378 QNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNL 438 (558)
Q Consensus 378 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l 438 (558)
|+|++|++++|+++...++.|.++++|++|++++|.++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4566777777777755556677777777777777777766666777777777777777764
|
... |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.5e-10 Score=121.18 Aligned_cols=150 Identities=24% Similarity=0.308 Sum_probs=92.4
Q ss_pred CCccEEEccCCcCCCCCchhhhCCCCCCEEEccccc--CCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCe
Q 037792 33 PKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNN--FAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWA 110 (558)
Q Consensus 33 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 110 (558)
...+.+.+-+|.+. .++.+. .+++|++|-+..|. +. .++..+|..++.|+.||+++|.-.+..|..++.+-+|++
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred hheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 45666666666665 222222 23467777777765 34 566666677777777777776655667777777777777
Q ss_pred eeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCc--ccchhhhcCCcccceeecc
Q 037792 111 LYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLE--GNIPVQFNNLASLQILNIS 186 (558)
Q Consensus 111 L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~ 186 (558)
|+++++.+. ..|..+.++..|.+|++..+.-....|.....+.+|++|.+...... ...-..+..+.+|+.+...
T Consensus 600 L~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 600 LDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred ccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 777777776 56777777777777777766655455565566777777777554321 1222333444455555443
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.6e-10 Score=79.72 Aligned_cols=61 Identities=44% Similarity=0.611 Sum_probs=57.2
Q ss_pred cccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcc
Q 037792 354 ELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKL 414 (558)
Q Consensus 354 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i 414 (558)
++|++|++++|+++...+..|.++++|++|++++|.++...|+.|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4689999999999977778999999999999999999988889999999999999999986
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.1e-10 Score=113.68 Aligned_cols=234 Identities=24% Similarity=0.283 Sum_probs=117.4
Q ss_pred CCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCee
Q 037792 32 LPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWAL 111 (558)
Q Consensus 32 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 111 (558)
+..++.+++..|.+.. +-..+..+++|+.|++.+|.+. .+... ...+++|++|++++|.|+. ...+..++.|+.|
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~-l~~~~~L~~L~ls~N~I~~--i~~l~~l~~L~~L 145 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENL-LSSLVNLQVLDLSFNKITK--LEGLSTLTLLKEL 145 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccc-hhhhhcchheecccccccc--ccchhhccchhhh
Confidence 4455555566666552 2233555666666666666665 33321 1345666666666666654 2334555556666
Q ss_pred eccccccccccchhhcCCCCCCEEEccCCcCCCCCc-ccccCCCCCcEEEcccCcCcccchhhhcCCcccceeecccccc
Q 037792 112 YLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIP-SWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNL 190 (558)
Q Consensus 112 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i 190 (558)
++++|.+.. ...+..++.|+.+++++|.+....+ . ...+.+++.+.+.+|.+... ..+..+..+..+++..|.+
T Consensus 146 ~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 146 NLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccc
Confidence 666666642 2334446666666666666664333 1 34556666666666665522 2233333444445555555
Q ss_pred ccccCCCcCCCC--ccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCC---------CCcCEEEccCCcCCCC---chh
Q 037792 191 SGSMISTLNLSS--VEHLYLQNNALGGSIPNTFFRGSALETLDLRINEH---------SNLRTLLLRGNYLQGP---IPH 256 (558)
Q Consensus 191 ~~~~~~~~~~~~--L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~---------~~L~~L~l~~n~l~~~---~~~ 256 (558)
+...... .... |+.+++++|.+.. .+..+..+..+..+++..|.. +.+..+....+.+... ...
T Consensus 221 ~~~~~l~-~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (414)
T KOG0531|consen 221 SKLEGLN-ELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNLEGLERLPKLSELWLNDNKLALSEAISQE 298 (414)
T ss_pred eeccCcc-cchhHHHHHHhcccCcccc-ccccccccccccccchhhccccccccccccchHHHhccCcchhcchhhhhcc
Confidence 4332211 1122 5666666665542 223333344444444444422 2233334444443311 111
Q ss_pred h-ccCCCCCCEEEcccCcCccc
Q 037792 257 Q-LCHLRKLGIMDISHNRLNGS 277 (558)
Q Consensus 257 ~-~~~l~~L~~L~l~~n~l~~~ 277 (558)
. ....+.++.+.+..|++...
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 299 YITSAAPTLVTLTLELNPIRKI 320 (414)
T ss_pred ccccccccccccccccCccccc
Confidence 1 44456677777777766543
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.9e-09 Score=109.96 Aligned_cols=197 Identities=24% Similarity=0.259 Sum_probs=113.9
Q ss_pred cCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCC
Q 037792 6 AQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLE 85 (558)
Q Consensus 6 ~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 85 (558)
.+..++.++++.|.+. .+-..+.. +.+|+.|++.+|.|..+ ...+..+++|++|++++|.++ .+.. +..++.|+
T Consensus 70 ~l~~l~~l~l~~n~i~-~~~~~l~~-~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~-~i~~--l~~l~~L~ 143 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA-KILNHLSK-LKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKIT-KLEG--LSTLTLLK 143 (414)
T ss_pred HhHhHHhhccchhhhh-hhhccccc-ccceeeeeccccchhhc-ccchhhhhcchheeccccccc-cccc--hhhccchh
Confidence 3456666667777776 43332332 67778888888877743 222666777888888888777 3332 23456677
Q ss_pred EEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCc
Q 037792 86 WLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNL 165 (558)
Q Consensus 86 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 165 (558)
.|++++|.|.. ...+..+++|+.+++++|.+....+.....+.+++.+.+.+|.+.... .+..+..+..+++..|.
T Consensus 144 ~L~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 144 ELNLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNK 219 (414)
T ss_pred hheeccCcchh--ccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc--chHHHHHHHHhhccccc
Confidence 78888887764 345556777778888887776443310356677777777777766322 12233334444555555
Q ss_pred CcccchhhhcCCc--ccceeeccccccccccCCCcCCCCccEEEccCCcCc
Q 037792 166 LEGNIPVQFNNLA--SLQILNISENNLSGSMISTLNLSSVEHLYLQNNALG 214 (558)
Q Consensus 166 l~~~~~~~~~~l~--~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~ 214 (558)
+....+ +..+. +|+.+++++|++...+...-.+..+..|++.+|++.
T Consensus 220 i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 220 ISKLEG--LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred ceeccC--cccchhHHHHHHhcccCccccccccccccccccccchhhcccc
Confidence 542211 12222 266666666666544322224555666666665554
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.2e-10 Score=113.33 Aligned_cols=108 Identities=29% Similarity=0.335 Sum_probs=73.7
Q ss_pred hcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEe
Q 037792 353 LELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFD 432 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~ 432 (558)
++.++.|+|++|+++.. +.+..+++|++|||++|.+....--...++ .|+.|++++|.++.. ..+.++.+|+.||
T Consensus 186 l~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL--~gie~LksL~~LD 260 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTL--RGIENLKSLYGLD 260 (1096)
T ss_pred HHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhh--hhHHhhhhhhccc
Confidence 67777788888887743 267778888888888888773322223333 388888888887733 3466778888888
Q ss_pred cCCCCCcCCCCC--CcccCCCCcccccCCCCCCCC
Q 037792 433 VSYNNLSGPIPD--KEQFSTFDESSYRGNLFLCGP 465 (558)
Q Consensus 433 l~~N~l~~~~p~--~~~~~~l~~~~~~~N~~~C~~ 465 (558)
+++|-|++.-.- .+.+..+..+.+.|||..|.+
T Consensus 261 lsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 261 LSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred hhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 888877753222 445566677778888887765
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=9.7e-09 Score=104.39 Aligned_cols=126 Identities=33% Similarity=0.274 Sum_probs=86.5
Q ss_pred CCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcc
Q 037792 83 SLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMS 162 (558)
Q Consensus 83 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 162 (558)
+|...++++|.+. ....++.-++.++.|+|++|+++.. +.+..++.|++|||++|.+....--...++. |+.|.+.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 4666667777765 4455677778888888888888643 3677788888888888888733222233444 8888888
Q ss_pred cCcCcccchhhhcCCcccceeeccccccccccCCCc--CCCCccEEEccCCcCc
Q 037792 163 KNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL--NLSSVEHLYLQNNALG 214 (558)
Q Consensus 163 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~--~~~~L~~L~l~~n~l~ 214 (558)
+|.++.. ..+.++.+|+.|++++|-+.+...-.+ .+..|+.|+|.+|.+.
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8877632 346777888888888887776433222 5667788888888764
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.3e-08 Score=91.30 Aligned_cols=175 Identities=22% Similarity=0.224 Sum_probs=85.5
Q ss_pred CCCEEEccCCccCccC-chhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCc-CCCC-CcccccCCCCCcEE
Q 037792 83 SLEWLDLSNNNFVGQI-FPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNR-LSGH-IPSWMGNFSTLQIL 159 (558)
Q Consensus 83 ~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L 159 (558)
.|++|||++..|+... ...++.+.+|+.|.+.++.+...+...+++-.+|+.|+++.+. ++.. ..-.+..|..|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 3666666665554311 1234556666666666666655555555666666666666543 2211 11124456666666
Q ss_pred EcccCcCcccchh-hhcC-CcccceeeccccccccccCC--Cc--CCCCccEEEccCCc-CcccchhhhhCCCCCcEEEc
Q 037792 160 SMSKNLLEGNIPV-QFNN-LASLQILNISENNLSGSMIS--TL--NLSSVEHLYLQNNA-LGGSIPNTFFRGSALETLDL 232 (558)
Q Consensus 160 ~L~~n~l~~~~~~-~~~~-l~~L~~L~L~~n~i~~~~~~--~~--~~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l 232 (558)
+++++.+...... .+.+ -++|+.|+++++.-.-...+ .. .+|+|.+|||++|. ++......+..+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf-------- 337 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKF-------- 337 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhc--------
Confidence 6666655422111 1111 13566666666532111111 11 56666666666643 333233344443
Q ss_pred CCCCCCCcCEEEccCCcCCCCchhh---ccCCCCCCEEEcccC
Q 037792 233 RINEHSNLRTLLLRGNYLQGPIPHQ---LCHLRKLGIMDISHN 272 (558)
Q Consensus 233 ~~n~~~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n 272 (558)
+.|++|.++.|.. ++|.. +...|.|.+||+-++
T Consensus 338 -----~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 338 -----NYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred -----chheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 3444444444433 23332 345566677776654
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.9e-08 Score=90.67 Aligned_cols=178 Identities=18% Similarity=0.184 Sum_probs=119.2
Q ss_pred CCccEEEccCCcCCCC-CchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCc-cCccCch-hhcCCCccC
Q 037792 33 PKLVYMNISKNSFEGN-IPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNN-FVGQIFP-NYMNLTRLW 109 (558)
Q Consensus 33 ~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~-~~~~l~~L~ 109 (558)
..|++||||...|+.. +-..++.+.+|+-|.+.++++.+.+...+ ..-.+|+.|+++.+. ++..... -+.+++.|.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI-AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH-hccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 3588889988877622 22346778888888999988887777666 566788999988753 3322222 467888899
Q ss_pred eeeccccccccccch-hhcC-CCCCCEEEccCCcCC---CCCcccccCCCCCcEEEcccCc-CcccchhhhcCCccccee
Q 037792 110 ALYLYNNNFSGKIKD-GLLR-STELMVLDISNNRLS---GHIPSWMGNFSTLQILSMSKNL-LEGNIPVQFNNLASLQIL 183 (558)
Q Consensus 110 ~L~l~~n~i~~~~~~-~~~~-l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 183 (558)
.|+++.|........ .+.. -++|+.|+++++.-. ..+.-....+|+|.+|||++|. ++......|-.++.|++|
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 999988877643221 1122 267888888887432 1222233568999999998875 333344556778899999
Q ss_pred eccccccccccCCCc----CCCCccEEEccCCcC
Q 037792 184 NISENNLSGSMISTL----NLSSVEHLYLQNNAL 213 (558)
Q Consensus 184 ~L~~n~i~~~~~~~~----~~~~L~~L~l~~n~l 213 (558)
.++.|..- ++..+ ..|+|.+|+..++--
T Consensus 344 SlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 344 SLSRCYDI--IPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred ehhhhcCC--ChHHeeeeccCcceEEEEeccccC
Confidence 99988532 22222 778999999887644
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.9e-07 Score=85.45 Aligned_cols=205 Identities=15% Similarity=0.166 Sum_probs=108.7
Q ss_pred CccEEEccCCcCCCCCC--hhhhhcCCCccEEEccCCcCCC--CCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCC
Q 037792 9 GLHSLDISRNSFSGKLP--QNMGIVLPKLVYMNISKNSFEG--NIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSL 84 (558)
Q Consensus 9 ~L~~L~l~~n~l~~~~p--~~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 84 (558)
.++.+.+.++.+. ..- ..+...+.+++.+||.+|.|+. .+..-+.++|.|++|+++.|.+...|...- ....+|
T Consensus 46 a~ellvln~~~id-~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl 123 (418)
T KOG2982|consen 46 ALELLVLNGSIID-NEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNL 123 (418)
T ss_pred chhhheecCCCCC-cchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-ccccce
Confidence 3334445555543 221 2344557778888888888762 223345678888888888887764433221 235677
Q ss_pred CEEEccCCccCcc-CchhhcCCCccCeeeccccccccccc--hhhcC-CCCCCEEEccCCcCCC--CCcccccCCCCCcE
Q 037792 85 EWLDLSNNNFVGQ-IFPNYMNLTRLWALYLYNNNFSGKIK--DGLLR-STELMVLDISNNRLSG--HIPSWMGNFSTLQI 158 (558)
Q Consensus 85 ~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~--~~~~~-l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~ 158 (558)
+.|-|.+..+.-. ....+..+|.++.|+++.|....... ..... -+.++++....|.... ..-..-.-+|++..
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s 203 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS 203 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchh
Confidence 7777777665421 12245667777777777775432111 11111 1244455544443220 00011122456666
Q ss_pred EEcccCcCccc-chhhhcCCcccceeeccccccccccCC-Cc-CCCCccEEEccCCcCcc
Q 037792 159 LSMSKNLLEGN-IPVQFNNLASLQILNISENNLSGSMIS-TL-NLSSVEHLYLQNNALGG 215 (558)
Q Consensus 159 L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~-~~~~L~~L~l~~n~l~~ 215 (558)
+.+..|.+.+. ..+.+..++.+..|+|+.++|..-..- .. +++.|..|.++++.+.+
T Consensus 204 v~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 204 VFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred eeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 66666655432 223445556666777777666532111 11 56777777777776653
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.25 E-value=7.7e-07 Score=80.52 Aligned_cols=237 Identities=20% Similarity=0.196 Sum_probs=132.6
Q ss_pred CCCccEEEccCCcCCCCCc----hhhhCCCCCCEEEcccccC---CccchHH------HHhcCCCCCEEEccCCccCccC
Q 037792 32 LPKLVYMNISKNSFEGNIP----SSIGKMQGLRLLDVSSNNF---AGELSQS------LVINCFSLEWLDLSNNNFVGQI 98 (558)
Q Consensus 32 l~~L~~L~Ls~n~i~~~~~----~~~~~l~~L~~L~L~~n~l---~~~~~~~------~~~~l~~L~~L~l~~n~i~~~~ 98 (558)
+..+..++||+|.|...-. ..+.+-.+|+..++++-.. .+.++.. ...+|++|+..++|.|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 6677888888887764322 3345557777777765422 1122221 2246778888888888776555
Q ss_pred chh----hcCCCccCeeeccccccccccchh-------------hcCCCCCCEEEccCCcCCCCCcc-----cccCCCCC
Q 037792 99 FPN----YMNLTRLWALYLYNNNFSGKIKDG-------------LLRSTELMVLDISNNRLSGHIPS-----WMGNFSTL 156 (558)
Q Consensus 99 ~~~----~~~l~~L~~L~l~~n~i~~~~~~~-------------~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L 156 (558)
|+. +++-+.|.+|.+++|.+.-....- ..+-|.|+......|++.. .|. .+.....|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlen-gs~~~~a~~l~sh~~l 187 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLEN-GSKELSAALLESHENL 187 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhcc-CcHHHHHHHHHhhcCc
Confidence 543 456677888888888765221111 1234678888888887762 222 22223567
Q ss_pred cEEEcccCcCcccch-----hhhcCCcccceeeccccccccccCCCc-----CCCCccEEEccCCcCcccchhhhh----
Q 037792 157 QILSMSKNLLEGNIP-----VQFNNLASLQILNISENNLSGSMISTL-----NLSSVEHLYLQNNALGGSIPNTFF---- 222 (558)
Q Consensus 157 ~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~n~i~~~~~~~~-----~~~~L~~L~l~~n~l~~~~~~~~~---- 222 (558)
+.+.+..|.|..... ..+..+.+|+.|++..|-++....... .++.|+.|.+.+|-++.....++.
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~ 267 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFN 267 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhh
Confidence 788888887652211 123445678888888876654322211 456678888887777654443321
Q ss_pred --CCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCc
Q 037792 223 --RGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLN 275 (558)
Q Consensus 223 --~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 275 (558)
..++|..|...+|....=..++.+-+.+. -..+|-|..+.+.+|.+.
T Consensus 268 e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e------~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 268 EKFVPNLMPLPGDYNERRGGIILDISLNEFE------QDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hhcCCCccccccchhhhcCceeeeechhhhh------hcccHHHHHHHHccCcch
Confidence 12344444444432222222222211111 134566777788888886
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.25 E-value=3e-07 Score=84.20 Aligned_cols=39 Identities=33% Similarity=0.281 Sum_probs=17.2
Q ss_pred CCccCeeecccccccc--ccchhhcCCCCCCEEEccCCcCC
Q 037792 105 LTRLWALYLYNNNFSG--KIKDGLLRSTELMVLDISNNRLS 143 (558)
Q Consensus 105 l~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~L~~n~l~ 143 (558)
.+.++.++|.+|.|+. .+...+.++|.|+.|+++.|.+.
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~ 110 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS 110 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC
Confidence 3444555555555431 11222334455555555555444
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=2e-07 Score=75.51 Aligned_cols=83 Identities=27% Similarity=0.420 Sum_probs=58.1
Q ss_pred cccCEEEccCCCCCCCCCcccc-CccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEe
Q 037792 354 ELMAGLDLSNNELTGDIPSEIG-DLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFD 432 (558)
Q Consensus 354 ~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~ 432 (558)
..|+..++++|.+.. .|..|. ..+.++.|++++|.|+ .+|+.+..++.|+.|+++.|.+. ..|..+..+.+|-.|+
T Consensus 53 ~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 456667777777773 343443 4557778888888887 56666777888888888888877 4556666677777777
Q ss_pred cCCCCCc
Q 037792 433 VSYNNLS 439 (558)
Q Consensus 433 l~~N~l~ 439 (558)
..+|.+.
T Consensus 130 s~~na~~ 136 (177)
T KOG4579|consen 130 SPENARA 136 (177)
T ss_pred CCCCccc
Confidence 7777776
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.01 E-value=9e-06 Score=70.65 Aligned_cols=105 Identities=21% Similarity=0.159 Sum_probs=53.8
Q ss_pred CCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccc-cchhhcCCCCCCEEE
Q 037792 58 GLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGK-IKDGLLRSTELMVLD 136 (558)
Q Consensus 58 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~ 136 (558)
+...+||++|.+. .++. +..++.|.+|.+.+|+|+.+.|.--..+++|+.|.+.+|.+... ....+..++.|++|.
T Consensus 43 ~~d~iDLtdNdl~-~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchh-hccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 3445555555544 2221 23445555555555555544444334445555555555555421 112344566677777
Q ss_pred ccCCcCCCCCc---ccccCCCCCcEEEcccCc
Q 037792 137 ISNNRLSGHIP---SWMGNFSTLQILSMSKNL 165 (558)
Q Consensus 137 L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~ 165 (558)
+-+|.++..-- ..+..+|+|+.||...-.
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 76666653211 245567777777776543
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.3e-06 Score=70.76 Aligned_cols=134 Identities=20% Similarity=0.213 Sum_probs=94.9
Q ss_pred CCccEEEccCCcCCCCCChhhhh--cCCCccEEEccCCcCCCCCchhhh-CCCCCCEEEcccccCCccchHHHHhcCCCC
Q 037792 8 HGLHSLDISRNSFSGKLPQNMGI--VLPKLVYMNISKNSFEGNIPSSIG-KMQGLRLLDVSSNNFAGELSQSLVINCFSL 84 (558)
Q Consensus 8 ~~L~~L~l~~n~l~~~~p~~~~~--~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 84 (558)
+.+..+||+++.+- .++..... ...+|+..+|++|.+. ..|..|. +.+.++.|++++|.+. .+|.++ ..++.|
T Consensus 27 kE~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~-Aam~aL 102 (177)
T KOG4579|consen 27 KELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEEL-AAMPAL 102 (177)
T ss_pred HHhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHH-hhhHHh
Confidence 34567888888875 66665443 2457778899999988 4555554 4568899999999998 888884 789999
Q ss_pred CEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCc
Q 037792 85 EWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIP 147 (558)
Q Consensus 85 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 147 (558)
+.|+++.|.+. ..|..+..+.++-.|+..+|....+..+ +....+.-..++.++.+.+.-+
T Consensus 103 r~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~d-l~~s~~~al~~lgnepl~~~~~ 163 (177)
T KOG4579|consen 103 RSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVD-LFYSSLPALIKLGNEPLGDETK 163 (177)
T ss_pred hhcccccCccc-cchHHHHHHHhHHHhcCCCCccccCcHH-HhccccHHHHHhcCCcccccCc
Confidence 99999999987 5677777788999999888887644444 3222333333445555554444
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.1e-06 Score=76.71 Aligned_cols=183 Identities=19% Similarity=0.212 Sum_probs=103.9
Q ss_pred CCCccEEEccCCcCCCCCch----hhhCCCCCCEEEcccccCCc----cchHHH--------HhcCCCCCEEEccCCccC
Q 037792 32 LPKLVYMNISKNSFEGNIPS----SIGKMQGLRLLDVSSNNFAG----ELSQSL--------VINCFSLEWLDLSNNNFV 95 (558)
Q Consensus 32 l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~----~~~~~~--------~~~l~~L~~L~l~~n~i~ 95 (558)
||+|+..+||.|.+....|. .+++-..|.+|.+++|.+-. .+...+ ..+-+.|+......|++.
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 67777777777776544443 34455667777777776531 111111 123456777777777765
Q ss_pred ccCc----hhhcCCCccCeeeccccccccc-----cchhhcCCCCCCEEEccCCcCCCCCc----ccccCCCCCcEEEcc
Q 037792 96 GQIF----PNYMNLTRLWALYLYNNNFSGK-----IKDGLLRSTELMVLDISNNRLSGHIP----SWMGNFSTLQILSMS 162 (558)
Q Consensus 96 ~~~~----~~~~~l~~L~~L~l~~n~i~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~ 162 (558)
.-.. ..+..-..|+++.+..|.|.-. ....+..+.+|+.||+..|-++.... ..+...+.|+.|.+.
T Consensus 171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln 250 (388)
T COG5238 171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN 250 (388)
T ss_pred cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence 3221 1233345677777777776422 11223455777888887777764332 233445667777777
Q ss_pred cCcCcccchhhh------cCCcccceeeccccccccccCCC-----c---CCCCccEEEccCCcCc
Q 037792 163 KNLLEGNIPVQF------NNLASLQILNISENNLSGSMIST-----L---NLSSVEHLYLQNNALG 214 (558)
Q Consensus 163 ~n~l~~~~~~~~------~~l~~L~~L~L~~n~i~~~~~~~-----~---~~~~L~~L~l~~n~l~ 214 (558)
.|-++.....++ ...++|..|...+|.+.+..... + .+|-|..|.+.+|++.
T Consensus 251 DClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 251 DCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred chhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 776653332222 23467777777777654322111 1 5677777778888775
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.99 E-value=6.8e-06 Score=53.83 Aligned_cols=36 Identities=39% Similarity=0.681 Sum_probs=15.9
Q ss_pred CCCeeeccCCcCCccchhhhhccccCCeEeCCCCccc
Q 037792 379 NIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN 415 (558)
Q Consensus 379 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~ 415 (558)
+|++|++++|+|+ .+|..++++++|+.|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444555555554 23333444555555555555444
|
... |
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.2e-05 Score=67.53 Aligned_cols=126 Identities=15% Similarity=0.177 Sum_probs=45.5
Q ss_pred CChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhc
Q 037792 24 LPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYM 103 (558)
Q Consensus 24 ~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~ 103 (558)
++...|..+++|+.+.+.. .+..+...+|.++.+|+.+.+.++ +. .++...|.++++++.+.+.+ .+.......|.
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~ 78 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFS 78 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccc
Confidence 3444444455555555553 344344445555555555555543 33 44555555555555555543 22222233444
Q ss_pred CCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCC
Q 037792 104 NLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTL 156 (558)
Q Consensus 104 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 156 (558)
.+++|+.+++..+ +.......|.+. +|+.+.+.. .+.......|.++++|
T Consensus 79 ~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 79 NCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp T-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 5555555555443 333333444443 555555443 2333334444444443
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.6e-05 Score=52.02 Aligned_cols=36 Identities=22% Similarity=0.513 Sum_probs=15.2
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCC
Q 037792 34 KLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFA 70 (558)
Q Consensus 34 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 70 (558)
+|++|++++|+|+ .+|..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 22333444444444444444444
|
... |
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.4e-05 Score=65.78 Aligned_cols=123 Identities=15% Similarity=0.202 Sum_probs=75.5
Q ss_pred CCCcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCC
Q 037792 3 LTSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCF 82 (558)
Q Consensus 3 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 82 (558)
.|..+++|+.+.+.. .+. .++...|.++++|+.+.+.++ +......+|.++++++.+.+.+ .+. .++...|..++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~ 81 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCT 81 (129)
T ss_dssp TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-T
T ss_pred HHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccc
Confidence 478899999999985 677 899999988999999999885 7666677899998999999976 555 67777888899
Q ss_pred CCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCC
Q 037792 83 SLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELM 133 (558)
Q Consensus 83 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 133 (558)
+|+.+.+..+ +.......|.+. +|+.+.+.. .+..+....|.++++|+
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 9999999765 554555678887 999999876 45556667788777764
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=7.8e-06 Score=87.43 Aligned_cols=152 Identities=24% Similarity=0.267 Sum_probs=92.7
Q ss_pred CCccEEEccCCcC-CCCCchhhh-CCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCe
Q 037792 33 PKLVYMNISKNSF-EGNIPSSIG-KMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWA 110 (558)
Q Consensus 33 ~~L~~L~Ls~n~i-~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 110 (558)
.+|++||+++... ....|..++ .+|.|+.|.+++-.+...--..+..++++|..||+|+++++.. ..++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 4677788777543 222233333 4677888888776664332344556778888888888777643 66777888888
Q ss_pred eecccccccc-ccchhhcCCCCCCEEEccCCcCCCCC--c----ccccCCCCCcEEEcccCcCcccchhhh-cCCcccce
Q 037792 111 LYLYNNNFSG-KIKDGLLRSTELMVLDISNNRLSGHI--P----SWMGNFSTLQILSMSKNLLEGNIPVQF-NNLASLQI 182 (558)
Q Consensus 111 L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~--~----~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~ 182 (558)
|.+.+-.+.. ..-..+..+++|+.||+|........ . +.-..+|+|+.||.+++.+....-+.+ ..-++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 8777766653 22345667788888888876544211 0 111347888888888887765443333 23345555
Q ss_pred eecc
Q 037792 183 LNIS 186 (558)
Q Consensus 183 L~L~ 186 (558)
+..-
T Consensus 280 i~~~ 283 (699)
T KOG3665|consen 280 IAAL 283 (699)
T ss_pred hhhh
Confidence 5443
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.9e-05 Score=66.78 Aligned_cols=107 Identities=22% Similarity=0.215 Sum_probs=65.9
Q ss_pred CCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCC-cccccCCCCCcEE
Q 037792 81 CFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHI-PSWMGNFSTLQIL 159 (558)
Q Consensus 81 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L 159 (558)
..+...+||++|.+.. ...|..++.|.+|.+++|.|+.+.|.--.-+++|+.|.+.+|.+.... -..+..+|.|++|
T Consensus 41 ~d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 3455667777776643 345666777777777777777666654445567777777777665211 1234566777777
Q ss_pred EcccCcCcccc---hhhhcCCcccceeeccccc
Q 037792 160 SMSKNLLEGNI---PVQFNNLASLQILNISENN 189 (558)
Q Consensus 160 ~L~~n~l~~~~---~~~~~~l~~L~~L~L~~n~ 189 (558)
.+-+|+++..- ...+..+|+|+.||..+-.
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 77777665211 1224566777777766543
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00014 Score=71.90 Aligned_cols=31 Identities=23% Similarity=0.278 Sum_probs=14.4
Q ss_pred CCcEEEcccCcCcccchhhhcCCcccceeecccc
Q 037792 155 TLQILSMSKNLLEGNIPVQFNNLASLQILNISEN 188 (558)
Q Consensus 155 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 188 (558)
+|++|++++|... ..|..+. .+|+.|.++.+
T Consensus 157 SLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 157 SLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred cccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 4555555555543 2232221 35555555544
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.71 E-value=3.6e-05 Score=82.46 Aligned_cols=149 Identities=19% Similarity=0.238 Sum_probs=104.6
Q ss_pred CCCCEEEcccccC-CccchHHHHhcCCCCCEEEccCCccCc-cCchhhcCCCccCeeeccccccccccchhhcCCCCCCE
Q 037792 57 QGLRLLDVSSNNF-AGELSQSLVINCFSLEWLDLSNNNFVG-QIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMV 134 (558)
Q Consensus 57 ~~L~~L~L~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 134 (558)
.+|++|++++... ....+..+..-+|.|+.|.+++-.+.. .......++++|..||+++++++.. .+++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 6799999988654 335666777789999999998866543 2334567899999999999999744 67888999999
Q ss_pred EEccCCcCCC-CCcccccCCCCCcEEEcccCcCcccc------hhhhcCCcccceeeccccccccccCCCc--CCCCccE
Q 037792 135 LDISNNRLSG-HIPSWMGNFSTLQILSMSKNLLEGNI------PVQFNNLASLQILNISENNLSGSMISTL--NLSSVEH 205 (558)
Q Consensus 135 L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~L~~n~i~~~~~~~~--~~~~L~~ 205 (558)
|.+.+=.+.. ..-..+.++++|+.||+|..+..... -+.-..+|+|+.||.++..+.+.....+ .-++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 9888766653 22234567899999999987654221 1112457899999999887765433332 3344544
Q ss_pred EE
Q 037792 206 LY 207 (558)
Q Consensus 206 L~ 207 (558)
+.
T Consensus 280 i~ 281 (699)
T KOG3665|consen 280 IA 281 (699)
T ss_pred hh
Confidence 44
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=9.6e-06 Score=78.06 Aligned_cols=264 Identities=18% Similarity=0.135 Sum_probs=141.1
Q ss_pred CccEEEccCCcCCCCCC-hhhhhcCCCccEEEccCCc-CCCCCchhh-hCCCCCCEEEcccc-cCCccchHHHHhcCCCC
Q 037792 9 GLHSLDISRNSFSGKLP-QNMGIVLPKLVYMNISKNS-FEGNIPSSI-GKMQGLRLLDVSSN-NFAGELSQSLVINCFSL 84 (558)
Q Consensus 9 ~L~~L~l~~n~l~~~~p-~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L 84 (558)
.|+.|.+++..-.+.-+ ..+...+|++++|.+.++. +++..-..+ ..+++|++|++..| .++...-..+...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 46667777665332222 2334468888888887765 232211222 45778888888874 44544444455678888
Q ss_pred CEEEccCCc-cCccCc-hhhcCCCccCeeeccccccccccchhh----cCCCCCCEEEccCCc-CCCCCc-ccccCCCCC
Q 037792 85 EWLDLSNNN-FVGQIF-PNYMNLTRLWALYLYNNNFSGKIKDGL----LRSTELMVLDISNNR-LSGHIP-SWMGNFSTL 156 (558)
Q Consensus 85 ~~L~l~~n~-i~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~~~~----~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L 156 (558)
++++++.+. |.+... .-+.++..++.+.+.+|.= .....+ .....+.++++..|. +++..- ..-.++..|
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e--~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l 296 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLE--LELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL 296 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhccccc--ccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence 888887764 332111 2234555566665554321 111111 223445555554443 221110 111235566
Q ss_pred cEEEcccCcC-cccchhhh-cCCcccceeecccccc-ccccCCCc--CCCCccEEEccCCcCccc--chhhhhCCCCCcE
Q 037792 157 QILSMSKNLL-EGNIPVQF-NNLASLQILNISENNL-SGSMISTL--NLSSVEHLYLQNNALGGS--IPNTFFRGSALET 229 (558)
Q Consensus 157 ~~L~L~~n~l-~~~~~~~~-~~l~~L~~L~L~~n~i-~~~~~~~~--~~~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~ 229 (558)
+.|+.+++.- ++..-.++ .+.++|+.|.++.|+- +....... +.+.|+.+++.++..... +...-..++.|+.
T Consensus 297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ 376 (483)
T KOG4341|consen 297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRV 376 (483)
T ss_pred hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhcc
Confidence 7777666532 22222222 3456777777776652 22222222 566677777766644211 1222234566666
Q ss_pred EEcCCC----------------CCCCcCEEEccCCcCC-CCchhhccCCCCCCEEEcccCcC
Q 037792 230 LDLRIN----------------EHSNLRTLLLRGNYLQ-GPIPHQLCHLRKLGIMDISHNRL 274 (558)
Q Consensus 230 L~l~~n----------------~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l 274 (558)
+.++.+ ....++.+.++++... +..-+.+..+++|+.+++-+++-
T Consensus 377 lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 377 LSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred CChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 666544 4567888888888654 34455677888899988887753
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00037 Score=68.97 Aligned_cols=34 Identities=12% Similarity=0.210 Sum_probs=19.6
Q ss_pred hcccCEEEccCCCCCCCCCccccCccCCCeeeccCCc
Q 037792 353 LELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNF 389 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 389 (558)
.++|+.|++++|... ..|..+. .+|+.|.++.|.
T Consensus 155 PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 155 SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred CCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence 356777777776654 3333332 466677766653
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.48 E-value=1.4e-05 Score=77.05 Aligned_cols=87 Identities=22% Similarity=0.145 Sum_probs=41.2
Q ss_pred hcccCEEEccCCCCCCCC--CccccCccCCCeeeccCCcCC-ccc----hhhhhccccCCeEeCCCCccc-ccCchhccc
Q 037792 353 LELMAGLDLSNNELTGDI--PSEIGDLQNIHGLNLSHNFLS-GSI----PESFSNLKMIESLDLSHNKLN-GQIPPQLTE 424 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~-~~~----~~~~~~l~~L~~L~Ls~N~i~-~~~~~~l~~ 424 (558)
.+.|+.+++..+...... ...-.+++.|+.|.+++|... +.. ...-..+..|+.+.|+++... ...-..+..
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~ 424 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI 424 (483)
T ss_pred ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh
Confidence 344555555555433111 111134566666666666532 110 111133456666666666543 222333455
Q ss_pred CCCCCEEecCCCCCc
Q 037792 425 LHSLSTFDVSYNNLS 439 (558)
Q Consensus 425 l~~L~~L~l~~N~l~ 439 (558)
++.|+.+++-.++-.
T Consensus 425 c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 425 CRNLERIELIDCQDV 439 (483)
T ss_pred Ccccceeeeechhhh
Confidence 566666666555443
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.35 E-value=4.4e-05 Score=80.10 Aligned_cols=76 Identities=22% Similarity=0.197 Sum_probs=41.2
Q ss_pred CCCCccEEEccCCcCcccc-hhhhhCCCCC-cEEEcCCCCCCCcCEEEccCCcCCC-CchhhccC-CCCCCEEEcccCcC
Q 037792 199 NLSSVEHLYLQNNALGGSI-PNTFFRGSAL-ETLDLRINEHSNLRTLLLRGNYLQG-PIPHQLCH-LRKLGIMDISHNRL 274 (558)
Q Consensus 199 ~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L-~~L~l~~n~~~~L~~L~l~~n~l~~-~~~~~~~~-l~~L~~L~l~~n~l 274 (558)
.++.++.+.+..+...... ...+.+++.| ..+.+.......++.|+++.+.... ..-..... +.+++.+++.++..
T Consensus 360 ~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 360 SCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred cCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCccc
Confidence 5677777777776644333 2455666666 3443333334447777777765432 11112222 55666677766543
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.12 E-value=4.5e-05 Score=69.62 Aligned_cols=98 Identities=26% Similarity=0.250 Sum_probs=44.7
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccC-chhhcCCCccCeee
Q 037792 34 KLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQI-FPNYMNLTRLWALY 112 (558)
Q Consensus 34 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~ 112 (558)
+.+.|++=++.+.++ ....+|+.|++|.|+-|+++ .+.+ +..|++|++|+|..|.|.+.- ..-+.++++|+.|.
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 344444444444422 22344555555555555554 2222 234555555555555554311 12345555555555
Q ss_pred ccccccccccch-----hhcCCCCCCEEE
Q 037792 113 LYNNNFSGKIKD-----GLLRSTELMVLD 136 (558)
Q Consensus 113 l~~n~i~~~~~~-----~~~~l~~L~~L~ 136 (558)
|..|...+..+. .+.-+|+|++||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 555554433221 234456666555
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.00025 Score=74.39 Aligned_cols=135 Identities=20% Similarity=0.113 Sum_probs=83.4
Q ss_pred CcCCCccEEEccCCcCCCCC-ChhhhhcCCCccEEEccCC-cCCCCCc----hhhhCCCCCCEEEccccc-CCccchHHH
Q 037792 5 SAQHGLHSLDISRNSFSGKL-PQNMGIVLPKLVYMNISKN-SFEGNIP----SSIGKMQGLRLLDVSSNN-FAGELSQSL 77 (558)
Q Consensus 5 ~~~~~L~~L~l~~n~l~~~~-p~~~~~~l~~L~~L~Ls~n-~i~~~~~----~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 77 (558)
..++.|+.+.+....-.... -..+...+++|+.|+++++ ......+ .....+++|+.|+++.+. +++..-..+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 34678888888876432121 1234445889999999873 2111111 234556889999999888 664444555
Q ss_pred HhcCCCCCEEEccCCc-cCccCch-hhcCCCccCeeecccccccc--ccchhhcCCCCCCEEEccC
Q 037792 78 VINCFSLEWLDLSNNN-FVGQIFP-NYMNLTRLWALYLYNNNFSG--KIKDGLLRSTELMVLDISN 139 (558)
Q Consensus 78 ~~~l~~L~~L~l~~n~-i~~~~~~-~~~~l~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~L~~ 139 (558)
...+++|++|.+.++. +++.... ....++.|++|+++.+.... ........+++++.|.+..
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 5568899999987776 5543333 34568889999999876531 1222234466666655443
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.91 E-value=7.1e-05 Score=68.37 Aligned_cols=100 Identities=19% Similarity=0.177 Sum_probs=56.0
Q ss_pred CCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchH-HHHhcCCCCC
Q 037792 7 QHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQ-SLVINCFSLE 85 (558)
Q Consensus 7 ~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~ 85 (558)
+.+.+.|++.++.+. .| ++...++.|++|.||-|+|+.. ..+..|++|++|.|..|.|. .+.+ ....++++|+
T Consensus 18 l~~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhh
Confidence 335556666666665 33 3444466666666666666643 23566666666666666665 2322 3345666666
Q ss_pred EEEccCCccCccCch-----hhcCCCccCeee
Q 037792 86 WLDLSNNNFVGQIFP-----NYMNLTRLWALY 112 (558)
Q Consensus 86 ~L~l~~n~i~~~~~~-----~~~~l~~L~~L~ 112 (558)
.|.|..|.-.+..+. .+.-+|+|+.||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 666666655443322 244556666554
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.00052 Score=62.56 Aligned_cols=108 Identities=20% Similarity=0.223 Sum_probs=75.8
Q ss_pred cCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccc--cCCccchHHHHhcCCCCCEEEccCCccCc-cCchhhcCCCc
Q 037792 31 VLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSN--NFAGELSQSLVINCFSLEWLDLSNNNFVG-QIFPNYMNLTR 107 (558)
Q Consensus 31 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~~~~l~~ 107 (558)
.+..|+.|++.+..++.. ..+-.+++|+.|.++.| ++.+.++.-+ ..+++|+++++++|+|.. .....+..+.+
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccchhhhhcc
Confidence 366788888877777633 35677889999999999 5555555444 456999999999999873 12234567778
Q ss_pred cCeeecccccccccc---chhhcCCCCCCEEEccCCc
Q 037792 108 LWALYLYNNNFSGKI---KDGLLRSTELMVLDISNNR 141 (558)
Q Consensus 108 L~~L~l~~n~i~~~~---~~~~~~l~~L~~L~L~~n~ 141 (558)
|..|++.+|..+... ...|.-+++|++|+-....
T Consensus 118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 889999998876421 1245556888888765443
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.00093 Score=60.94 Aligned_cols=86 Identities=23% Similarity=0.276 Sum_probs=38.3
Q ss_pred hcCCCccCeeecccc--ccccccchhhcCCCCCCEEEccCCcCCCCCccc---ccCCCCCcEEEcccCcCcc---cchhh
Q 037792 102 YMNLTRLWALYLYNN--NFSGKIKDGLLRSTELMVLDISNNRLSGHIPSW---MGNFSTLQILSMSKNLLEG---NIPVQ 173 (558)
Q Consensus 102 ~~~l~~L~~L~l~~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L~~n~l~~---~~~~~ 173 (558)
+-.+++|+.|.++.| ++.+........+++|+++++++|++.. +.. +..+.+|..|++.+|..+. .-...
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~v 138 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELENLKSLDLFNCSVTNLDDYREKV 138 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhcchhhhhcccCCccccccHHHHH
Confidence 334444555555555 3333333333334555555555555441 111 2233445555555554332 11223
Q ss_pred hcCCcccceeeccccc
Q 037792 174 FNNLASLQILNISENN 189 (558)
Q Consensus 174 ~~~l~~L~~L~L~~n~ 189 (558)
|.-+++|+.|+-....
T Consensus 139 f~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 139 FLLLPSLKYLDGCDVD 154 (260)
T ss_pred HHHhhhhccccccccC
Confidence 4555666666544433
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.00019 Score=73.67 Aligned_cols=13 Identities=38% Similarity=0.503 Sum_probs=8.2
Q ss_pred ccCEEEccCCCCC
Q 037792 355 LMAGLDLSNNELT 367 (558)
Q Consensus 355 ~L~~L~Ls~n~l~ 367 (558)
.+..++++.|.++
T Consensus 433 ~~~~~~l~~~~~~ 445 (478)
T KOG4308|consen 433 SLKALRLSRNPIT 445 (478)
T ss_pred cchhhhhccChhh
Confidence 4556666666665
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.0072 Score=32.76 Aligned_cols=12 Identities=42% Similarity=0.457 Sum_probs=5.6
Q ss_pred CCeeeccCCcCC
Q 037792 380 IHGLNLSHNFLS 391 (558)
Q Consensus 380 L~~L~Ls~N~l~ 391 (558)
|++|+|++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 444444444444
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.013 Score=31.73 Aligned_cols=21 Identities=43% Similarity=0.662 Sum_probs=12.8
Q ss_pred cCCeEeCCCCcccccCchhccc
Q 037792 403 MIESLDLSHNKLNGQIPPQLTE 424 (558)
Q Consensus 403 ~L~~L~Ls~N~i~~~~~~~l~~ 424 (558)
+|++||+++|+++ .+|..|.+
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4667777777776 45544543
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.064 Score=26.88 Aligned_cols=13 Identities=38% Similarity=0.708 Sum_probs=5.6
Q ss_pred CccEEEccCCcCC
Q 037792 9 GLHSLDISRNSFS 21 (558)
Q Consensus 9 ~L~~L~l~~n~l~ 21 (558)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555554
|
... |
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.0051 Score=55.08 Aligned_cols=84 Identities=18% Similarity=0.204 Sum_probs=74.0
Q ss_pred hcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEe
Q 037792 353 LELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFD 432 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~ 432 (558)
.+..+.||++.|++. -.-..|+-++.|..|+++.|.+. ..|+.++.+..+..+++.+|..+ ..|.++...+++++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 567888999999987 44456888899999999999998 78889999999999999999998 6788899999999999
Q ss_pred cCCCCCc
Q 037792 433 VSYNNLS 439 (558)
Q Consensus 433 l~~N~l~ 439 (558)
+.+|++.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9999975
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.14 Score=28.92 Aligned_cols=23 Identities=35% Similarity=0.419 Sum_probs=15.5
Q ss_pred CCCccEEEccCCcCCCCCChhhhh
Q 037792 7 QHGLHSLDISRNSFSGKLPQNMGI 30 (558)
Q Consensus 7 ~~~L~~L~l~~n~l~~~~p~~~~~ 30 (558)
+++|++|++++|.+. .+|...|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 356777777777777 67766653
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.14 Score=28.92 Aligned_cols=23 Identities=35% Similarity=0.419 Sum_probs=15.5
Q ss_pred CCCccEEEccCCcCCCCCChhhhh
Q 037792 7 QHGLHSLDISRNSFSGKLPQNMGI 30 (558)
Q Consensus 7 ~~~L~~L~l~~n~l~~~~p~~~~~ 30 (558)
+++|++|++++|.+. .+|...|.
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f~ 23 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAFQ 23 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHcc
Confidence 356777777777777 67766653
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.0053 Score=63.18 Aligned_cols=185 Identities=22% Similarity=0.253 Sum_probs=101.3
Q ss_pred ccEEEccCCcCCCCCChhhhh---cCCCccEEEccCCcCCCCCchh----hhCC-CCCCEEEcccccCCcc----chHHH
Q 037792 10 LHSLDISRNSFSGKLPQNMGI---VLPKLVYMNISKNSFEGNIPSS----IGKM-QGLRLLDVSSNNFAGE----LSQSL 77 (558)
Q Consensus 10 L~~L~l~~n~l~~~~p~~~~~---~l~~L~~L~Ls~n~i~~~~~~~----~~~l-~~L~~L~L~~n~l~~~----~~~~~ 77 (558)
+..+.+.+|.+.......+.. ..++|..|++++|.+.+..... +... ..+++|++..|.+++. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 788899999987544444433 3578999999999987433222 2222 4577888888888743 33333
Q ss_pred HhcCCCCCEEEccCCccCcc----Cchhhc----CCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCccc
Q 037792 78 VINCFSLEWLDLSNNNFVGQ----IFPNYM----NLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSW 149 (558)
Q Consensus 78 ~~~l~~L~~L~l~~n~i~~~----~~~~~~----~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 149 (558)
.....++.++++.|.+... .+..+. ...++++|++++|.++..... .....
T Consensus 169 -~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~--------------------~l~~~ 227 (478)
T KOG4308|consen 169 -EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCA--------------------LLDEV 227 (478)
T ss_pred -hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHH--------------------HHHHH
Confidence 2366788888888876421 111222 244455555555554421110 00112
Q ss_pred ccCCCC-CcEEEcccCcCccc----chhhhcCC-cccceeeccccccccccCCCc-----CCCCccEEEccCCcCcc
Q 037792 150 MGNFST-LQILSMSKNLLEGN----IPVQFNNL-ASLQILNISENNLSGSMISTL-----NLSSVEHLYLQNNALGG 215 (558)
Q Consensus 150 ~~~l~~-L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~-----~~~~L~~L~l~~n~l~~ 215 (558)
+...+. +..+++..|.+.+. ....+..+ ..++++++..|.++....... .++.++.+.+++|.+..
T Consensus 228 l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 228 LASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 222232 34455555554322 12223333 456667777776665433222 45567777777777654
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.15 Score=28.75 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=7.9
Q ss_pred ccCCeEeCCCCccccc
Q 037792 402 KMIESLDLSHNKLNGQ 417 (558)
Q Consensus 402 ~~L~~L~Ls~N~i~~~ 417 (558)
++|++|+|++|+|...
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3455555555555533
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.15 Score=28.75 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=7.9
Q ss_pred ccCCeEeCCCCccccc
Q 037792 402 KMIESLDLSHNKLNGQ 417 (558)
Q Consensus 402 ~~L~~L~Ls~N~i~~~ 417 (558)
++|++|+|++|+|...
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3455555555555533
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.09 E-value=0.079 Score=46.74 Aligned_cols=84 Identities=18% Similarity=0.130 Sum_probs=51.6
Q ss_pred ccceeeccccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCC-cCCCCchh
Q 037792 179 SLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGN-YLQGPIPH 256 (558)
Q Consensus 179 ~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n-~l~~~~~~ 256 (558)
.++.++-++..|......-+ .++.++.|.+.+|.-.+... +..+. + ..++|+.|++++| .|++..-.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~--L~~l~--------~-~~~~L~~L~lsgC~rIT~~GL~ 170 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWC--LERLG--------G-LAPSLQDLDLSGCPRITDGGLA 170 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHH--HHHhc--------c-cccchheeeccCCCeechhHHH
Confidence 45666666666655444333 56666666666664332211 11110 0 3578888888877 67766677
Q ss_pred hccCCCCCCEEEcccCc
Q 037792 257 QLCHLRKLGIMDISHNR 273 (558)
Q Consensus 257 ~~~~l~~L~~L~l~~n~ 273 (558)
.+..+++|+.|.+.+=+
T Consensus 171 ~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 171 CLLKLKNLRRLHLYDLP 187 (221)
T ss_pred HHHHhhhhHHHHhcCch
Confidence 78888999998887643
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=89.82 E-value=0.11 Score=28.73 Aligned_cols=15 Identities=33% Similarity=0.554 Sum_probs=6.4
Q ss_pred cCCCeeeccCCcCCc
Q 037792 378 QNIHGLNLSHNFLSG 392 (558)
Q Consensus 378 ~~L~~L~Ls~N~l~~ 392 (558)
++|++|+|++|+|++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 344555555555443
|
... |
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.73 E-value=0.019 Score=51.57 Aligned_cols=88 Identities=23% Similarity=0.281 Sum_probs=71.5
Q ss_pred ccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCCCcccCCC
Q 037792 372 SEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTF 451 (558)
Q Consensus 372 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l 451 (558)
..+......+.||++.|++. -....|+-++.|..||++.|.|. ..|..+..+..+..+++.+|..+..+-+.......
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHP 113 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccccCCc
Confidence 45667788999999999987 45567888999999999999998 67888888889999999999998655555556667
Q ss_pred CcccccCCCC
Q 037792 452 DESSYRGNLF 461 (558)
Q Consensus 452 ~~~~~~~N~~ 461 (558)
...+..+||+
T Consensus 114 k~~e~k~~~~ 123 (326)
T KOG0473|consen 114 KKNEQKKTEF 123 (326)
T ss_pred chhhhccCcc
Confidence 7777777764
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.03 E-value=0.17 Score=44.77 Aligned_cols=82 Identities=20% Similarity=0.214 Sum_probs=37.8
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccch-HHHHhcCCCCCEEEccCC-ccCccCchhhcCCCccCee
Q 037792 34 KLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELS-QSLVINCFSLEWLDLSNN-NFVGQIFPNYMNLTRLWAL 111 (558)
Q Consensus 34 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L 111 (558)
.++.+|-++..|..+.-+.+.+++.++.|.+.++.-.+..- ..+..-.++|+.|++++| +|++.....+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 34555555555554444445555555555555554321111 111122345555555544 2443333444455555555
Q ss_pred eccc
Q 037792 112 YLYN 115 (558)
Q Consensus 112 ~l~~ 115 (558)
.+++
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 4443
|
|
| >TIGR00864 PCC polycystin cation channel protein | Back alignment and domain information |
|---|
Probab=83.57 E-value=0.72 Score=56.20 Aligned_cols=39 Identities=26% Similarity=0.198 Sum_probs=35.0
Q ss_pred eCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCCCc
Q 037792 408 DLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKE 446 (558)
Q Consensus 408 ~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~ 446 (558)
||++|+|+.+.+..|..+++|+.|+|++|++.|.|...+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~W 39 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLAR 39 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHH
Confidence 689999998888899999999999999999999888644
|
Note: this model has been restricted to the amino half because for technical reasons. |
| >KOG4242 consensus Predicted myosin-I-binding protein [Cell motility] | Back alignment and domain information |
|---|
Probab=80.87 E-value=7.3 Score=39.36 Aligned_cols=240 Identities=17% Similarity=0.099 Sum_probs=109.2
Q ss_pred CCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHH--hcCCCCCEEEccCCccCccCchhhc---CCCc
Q 037792 33 PKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLV--INCFSLEWLDLSNNNFVGQIFPNYM---NLTR 107 (558)
Q Consensus 33 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~~l~~L~~L~l~~n~i~~~~~~~~~---~l~~ 107 (558)
+.+++++++.|.+....|-.+..-.. -+.++.+..+...-..+. ..-..+.+++++.|.....++..+. .-..
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~--pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~v 242 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGN--PLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLV 242 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCC--ccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhh
Confidence 44566666666665444433322111 144444444322111110 1112466677777766554444322 2223
Q ss_pred cCeeeccccccccc---cchhhcCCCCCCEEEccCCcCCC----CC----cccccCCCCCcEEEcccCcCcccchhh-hc
Q 037792 108 LWALYLYNNNFSGK---IKDGLLRSTELMVLDISNNRLSG----HI----PSWMGNFSTLQILSMSKNLLEGNIPVQ-FN 175 (558)
Q Consensus 108 L~~L~l~~n~i~~~---~~~~~~~l~~L~~L~L~~n~l~~----~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~ 175 (558)
++.++.+...+.-. .+-..+.-+.++..+++.|.... +. -..|+.-+++ +|++..+.....-+.. +-
T Consensus 243 l~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LL 321 (553)
T KOG4242|consen 243 LFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLL 321 (553)
T ss_pred hhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhhhhc
Confidence 55566655544311 11122233466666666664431 11 1223333455 5665555443221111 10
Q ss_pred -----CCcccceeecccccccccc--CCCcCCCCccEEEccCCcCcccchhh--hhCCCCCcEEEcCCC-----------
Q 037792 176 -----NLASLQILNISENNLSGSM--ISTLNLSSVEHLYLQNNALGGSIPNT--FFRGSALETLDLRIN----------- 235 (558)
Q Consensus 176 -----~l~~L~~L~L~~n~i~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~~~~L~~L~l~~n----------- 235 (558)
.-..=-++++..|...+.. .....-..+++|...+|.+.+..... ....++.+.+++...
T Consensus 322 gla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~ 401 (553)
T KOG4242|consen 322 GLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTE 401 (553)
T ss_pred ccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccccccceeeccccccccccccCCceecccccc
Confidence 0011234455555443211 11112345777888777776543322 223345555555443
Q ss_pred ---------CCCCcCEEEccCCcCCCCc---hhhccCCCCCCEEEcccCcCc
Q 037792 236 ---------EHSNLRTLLLRGNYLQGPI---PHQLCHLRKLGIMDISHNRLN 275 (558)
Q Consensus 236 ---------~~~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~l~ 275 (558)
..--+..+.++.+.+.... ......-+.+..|++++|...
T Consensus 402 a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 402 APPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred chhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCcc
Confidence 1233566667777665322 223445567888888888764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 558 | ||||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 2e-46 | ||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 4e-06 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 2e-46 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 3e-06 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 3e-14 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 2e-13 | ||
| 2z63_A | 570 | Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A | 1e-05 | ||
| 3j0a_A | 844 | Homology Model Of Human Toll-Like Receptor 5 Fitted | 3e-05 | ||
| 3fxi_A | 605 | Crystal Structure Of The Human Tlr4-Human Md-2-E.Co | 5e-05 | ||
| 4g8a_A | 635 | Crystal Structure Of Human Tlr4 Polymorphic Variant | 8e-05 | ||
| 3t6q_A | 606 | Crystal Structure Of Mouse Rp105MD-1 Complex Length | 2e-04 | ||
| 2z66_A | 306 | Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A | 3e-04 |
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570 | Back alignment and structure |
|
| >pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844 | Back alignment and structure |
|
| >pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605 | Back alignment and structure |
|
| >pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635 | Back alignment and structure |
|
| >pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex Length = 606 | Back alignment and structure |
|
| >pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 411 bits (1059), Expect = e-135
Identities = 160/499 (32%), Positives = 232/499 (46%), Gaps = 23/499 (4%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
L L ++ N F+G++P + L +++S N F G +P G L L +SSNNF
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLT-RLWALYLYNNNFSGKIKDGLLR 128
+GEL ++ L+ LDLS N F G++ + NL+ L L L +NNFSG I L +
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ 390
Query: 129 S--TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNIS 186
+ L L + NN +G IP + N S L L +S N L G IP +L+ L+ L +
Sbjct: 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450
Query: 187 ENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLR-----------I 234
N L G + L + ++E L L N L G IP+ + L + L I
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510
Query: 235 NEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGY 294
NL L L N G IP +L R L +D++ N NG+IPA + N
Sbjct: 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFI 570
Query: 295 LYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFM--TKNRY---ESYK 349
+ ++ +D + + L G L L N T Y S
Sbjct: 571 AGKRYVYIK---NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627
Query: 350 GDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDL 409
D M LD+S N L+G IP EIG + + LNL HN +SGSIP+ +L+ + LDL
Sbjct: 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 687
Query: 410 SHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGPAINK 469
S NKL+G+IP ++ L L+ D+S NNLSGPIP+ QF TF + + N LCG + +
Sbjct: 688 SSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 747
Query: 470 GCTNLPELLEPSSKGAEDE 488
+ + +
Sbjct: 748 CDPSNADGYAHHQRSHHHH 766
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 220 bits (562), Expect = 3e-63
Identities = 93/293 (31%), Positives = 139/293 (47%), Gaps = 22/293 (7%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
L LD+S N+FS +P L +++IS N G+ +I L+LL++SSN F
Sbjct: 202 LEFLDVSSNNFSTGIPFLGD--CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFVGQIFPN-YMNLTRLWALYLYNNNFSGKIKDGLLR 128
G + SL++L L+ N F G+I L L L N+F G +
Sbjct: 260 VGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316
Query: 129 STELMVLDISNNRLSGHIP-SWMGNFSTLQILSMSKNLLEGNIPVQFNNL-ASLQILNIS 186
+ L L +S+N SG +P + L++L +S N G +P NL ASL L++S
Sbjct: 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376
Query: 187 ENNLSGSM---ISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRIN-------- 235
NN SG + + ++++ LYLQNN G IP T S L +L L N
Sbjct: 377 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436
Query: 236 ---EHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNM 285
S LR L L N L+G IP +L +++ L + + N L G IP+ ++N
Sbjct: 437 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 209 bits (534), Expect = 3e-59
Identities = 80/276 (28%), Positives = 119/276 (43%), Gaps = 23/276 (8%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPS--SIGKMQGLRLLDVSSN 67
L SL +S + +G + L +++S+NS G + + S+G GL+ L+VSSN
Sbjct: 79 LESLFLSNSHINGSVSGFKC--SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSN 136
Query: 68 NFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYM---NLTRLWALYLYNNNFSGKIKD 124
S + SLE LDLS N+ G ++ L L + N SG +
Sbjct: 137 TLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV 196
Query: 125 GLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILN 184
+ L LD+S+N S IP +G+ S LQ L +S N L G+ + L++LN
Sbjct: 197 SRCVN--LEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253
Query: 185 ISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLL 244
IS N G I L L S+++L L N G IP+ L L
Sbjct: 254 ISSNQFVGP-IPPLPLKSLQYLSLAENKFTGEIPDFLS------------GACDTLTGLD 300
Query: 245 LRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPA 280
L GN+ G +P L + +S N +G +P
Sbjct: 301 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 207 bits (530), Expect = 8e-59
Identities = 98/392 (25%), Positives = 169/392 (43%), Gaps = 60/392 (15%)
Query: 83 SLEWLDLSNNNF---VGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISN 139
+ +DLS+ + + ++LT L +L+L N++ +G + G S L LD+S
Sbjct: 51 KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV-SGFKCSASLTSLDLSR 109
Query: 140 NRLSGHIPS--WMGNFSTLQILSMSKNLLEGNIPVQ-FNNLASLQILNISENNLSGSMIS 196
N LSG + + +G+ S L+ L++S N L+ V L SL++L++S N++SG+ +
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169
Query: 197 TL----NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRIN----------EHSNLRT 242
++HL + N + G + R LE LD+ N + S L+
Sbjct: 170 GWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQH 227
Query: 243 LLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVL 302
L + GN L G + +L +++IS N+ G IP L L
Sbjct: 228 LDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSL-------------QYL 274
Query: 303 RMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGL--- 359
+ N + + L G + G ++ N G +
Sbjct: 275 SLA------ENKFTGEIPDFLSGACDTLTGLDLSGNHFY--------GAVPPFFGSCSLL 320
Query: 360 ---DLSNNELTGDIPSE-IGDLQNIHGLNLSHNFLSGSIPESFSNLKM-IESLDLSHNKL 414
LS+N +G++P + + ++ + L+LS N SG +PES +NL + +LDLS N
Sbjct: 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380
Query: 415 NGQIPPQL--TELHSLSTFDVSYNNLSGPIPD 444
+G I P L ++L + N +G IP
Sbjct: 381 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 203 bits (518), Expect = 5e-57
Identities = 86/296 (29%), Positives = 135/296 (45%), Gaps = 26/296 (8%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSI---GKMQGLRLLDVSS 66
L L++S N+ + G+ L L +++S NS G L+ L +S
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 187
Query: 67 NNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGL 126
N +G++ S C +LE+LD+S+NNF I P + + L L + N SG +
Sbjct: 188 NKISGDVDVS---RCVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAI 243
Query: 127 LRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQ-FNNLASLQILNI 185
TEL +L+IS+N+ G IP +LQ LS+++N G IP +L L++
Sbjct: 244 STCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 301
Query: 186 SENNLSGSMISTL-NLSSVEHLYLQNNALGGSIP-NTFFRGSALETLDLRINE------- 236
S N+ G++ + S +E L L +N G +P +T + L+ LDL NE
Sbjct: 302 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361
Query: 237 -----HSNLRTLLLRGNYLQGPIPHQLCH--LRKLGIMDISHNRLNGSIPACITNM 285
++L TL L N GPI LC L + + +N G IP ++N
Sbjct: 362 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 417
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 180 bits (459), Expect = 5e-49
Identities = 65/259 (25%), Positives = 111/259 (42%), Gaps = 20/259 (7%)
Query: 43 NSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNY 102
N + SS+ + GL L +S+++ G +S SL LDLS N+ G +
Sbjct: 63 NVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFK--CSASLTSLDLSRNSLSGPVTTLT 120
Query: 103 M--NLTRLWALYLYNNNFSGKIKD-GLLRSTELMVLDISNNRLSGHIPSWM---GNFSTL 156
+ + L L + +N K G L+ L VLD+S N +SG L
Sbjct: 121 SLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGEL 180
Query: 157 QILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGS 216
+ L++S N + G++ + +L+ L++S NN S + + S+++HL + N L G
Sbjct: 181 KHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD 238
Query: 217 IPNTFFRGSALETLDLRINE---------HSNLRTLLLRGNYLQGPIPHQLCH-LRKLGI 266
+ L+ L++ N+ +L+ L L N G IP L L
Sbjct: 239 FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTG 298
Query: 267 MDISHNRLNGSIPACITNM 285
+D+S N G++P +
Sbjct: 299 LDLSGNHFYGAVPPFFGSC 317
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 2e-25
Identities = 53/262 (20%), Positives = 98/262 (37%), Gaps = 38/262 (14%)
Query: 199 NLSSVEHLYLQNNAL---GGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIP 255
V + L + L ++ ++ + LE+L L +++ G +
Sbjct: 48 RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLS-------------NSHINGSVS 94
Query: 256 HQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYY 315
L +D+S N L+G + + S ++ + + + S
Sbjct: 95 -GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKV-----SGGL 148
Query: 316 NST--VELLLDGND--GRMLGALVAVNFMTKNRY-----ESYKGDI----LELMAGLDLS 362
L L N G + V + + ++ GD+ + LD+S
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVS 208
Query: 363 NNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQL 422
+N + IP +GD + L++S N LSG + S ++ L++S N+ G IPP
Sbjct: 209 SNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP 267
Query: 423 TELHSLSTFDVSYNNLSGPIPD 444
L SL ++ N +G IPD
Sbjct: 268 --LKSLQYLSLAENKFTGEIPD 287
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 99 bits (250), Expect = 4e-22
Identities = 40/174 (22%), Positives = 77/174 (44%), Gaps = 24/174 (13%)
Query: 128 RSTELMVLDISNNRLS---GHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILN 184
R ++ +D+S+ L+ + S + + + L+ L +S + + G++ F ASL L+
Sbjct: 48 RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLD 106
Query: 185 ISENNLSGSMISTL---NLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRIN----- 235
+S N+LSG + + + S ++ L + +N L + ++LE LDL N
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166
Query: 236 ---------EHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPA 280
L+ L + GN + G + + L +D+S N + IP
Sbjct: 167 NVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF 218
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 1e-10
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 376 DLQNIHGLNLSHNFLS---GSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFD 432
+ ++LS L+ ++ S +L +ESL LS++ +NG + SL++ D
Sbjct: 48 RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLD 106
Query: 433 VSYNNLSGPIPDKEQFS 449
+S N+LSGP+
Sbjct: 107 LSRNSLSGPVTTLTSLG 123
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 4e-10
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 8 HGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSN 67
L L++ N SG +P +G L L +++S N +G IP ++ + L +D+S+N
Sbjct: 656 PYLFILNLGHNDISGSIPDEVGD-LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714
Query: 68 NFAGEL 73
N +G +
Sbjct: 715 NLSGPI 720
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 203 bits (519), Expect = 3e-61
Identities = 85/358 (23%), Positives = 124/358 (34%), Gaps = 94/358 (26%)
Query: 115 NNNFSGKIKDGLLRSTELMVLDISNNRLSG--HIPSWMGNFSTLQILSMSK-NLLEGNIP 171
N + G + D ++ + LD+S L IPS + N L L + N L G IP
Sbjct: 35 NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP 94
Query: 172 VQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLD 231
L L L I+ N+SG+ IP+ + L TLD
Sbjct: 95 PAIAKLTQLHYLYITHTNVSGA-----------------------IPDFLSQIKTLVTLD 131
Query: 232 LRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVE 291
N L G +P + L L + NR++G+IP +
Sbjct: 132 FS-------------YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS----- 173
Query: 292 NGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGD 351
+ + N G
Sbjct: 174 ------------------------KLFTSMTISRN--------------------RLTGK 189
Query: 352 ILELMAGLDL-----SNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIES 406
I A L+L S N L GD G +N ++L+ N L+ + K +
Sbjct: 190 IPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNG 248
Query: 407 LDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCG 464
LDL +N++ G +P LT+L L + +VS+NNL G IP FD S+Y N LCG
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCG 306
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 180 bits (458), Expect = 2e-52
Identities = 74/278 (26%), Positives = 134/278 (48%), Gaps = 23/278 (8%)
Query: 10 LHSLDISRNSFSG--KLPQNMGIVLPKLVYMNISK-NSFEGNIPSSIGKMQGLRLLDVSS 66
+++LD+S + +P ++ LP L ++ I N+ G IP +I K+ L L ++
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 67 NNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGL 126
N +G + L +L LD S N G + P+ +L L + N SG I D
Sbjct: 111 TNVSGAIPDFL-SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169
Query: 127 LRSTELM-VLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNI 185
++L + IS NRL+G IP N + L + +S+N+LEG+ V F + + Q +++
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228
Query: 186 SENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLL 245
++N+L+ + ++ L L+NN + G++P + L +L++ S
Sbjct: 229 AKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV-----SF------ 277
Query: 246 RGNYLQGPIPHQLCHLRKLGIMDISHNRL--NGSIPAC 281
N L G IP Q +L++ + ++N+ +PAC
Sbjct: 278 --NNLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPAC 312
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 176 bits (448), Expect = 6e-51
Identities = 61/250 (24%), Positives = 106/250 (42%), Gaps = 17/250 (6%)
Query: 39 NISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVI-NCFSLEWLDLSN-NNFVG 96
+ ++ G + + + + LD+S N + N L +L + NN VG
Sbjct: 32 DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG 91
Query: 97 QIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTL 156
I P LT+L LY+ + N SG I D L + L+ LD S N LSG +P + + L
Sbjct: 92 PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151
Query: 157 QILSMSKNLLEGNIPVQFNNLASL-QILNISENNLSGSMISTLNLSSVEHLYLQNNALGG 215
++ N + G IP + + + L + IS N L+G + T ++ + L N L G
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEG 211
Query: 216 SIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLN 275
F + + L N L + ++ + L +D+ +NR+
Sbjct: 212 DASVLFGSDKNTQKIHLA-------------KNSLAFDLG-KVGLSKNLNGLDLRNNRIY 257
Query: 276 GSIPACITNM 285
G++P +T +
Sbjct: 258 GTLPQGLTQL 267
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 2e-38
Identities = 46/208 (22%), Positives = 82/208 (39%), Gaps = 15/208 (7%)
Query: 87 LDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSG--KIKDGLLRSTELMVLDISN-NRLS 143
D N ++G + R+ L L N I L L L I N L
Sbjct: 31 TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90
Query: 144 GHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSS 202
G IP + + L L ++ + G IP + + +L L+ S N LSG++ ++ +L +
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150
Query: 203 VEHLYLQNNALGGSIPNTFFRGSALET-LDLRINE----------HSNLRTLLLRGNYLQ 251
+ + N + G+IP+++ S L T + + N + NL + L N L+
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLE 210
Query: 252 GPIPHQLCHLRKLGIMDISHNRLNGSIP 279
G + + ++ N L +
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLG 238
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 8e-17
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
Query: 358 GLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGS--IPESFSNLKMIESLDLSH-NKL 414
D N G + ++ L+LS L IP S +NL + L + N L
Sbjct: 30 TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89
Query: 415 NGQIPPQLTELHSLSTFDVSYNNLSGPIPD 444
G IPP + +L L +++ N+SG IPD
Sbjct: 90 VGPIPPAIAKLTQLHYLYITHTNVSGAIPD 119
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 5e-06
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 9 GLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNN 68
L+ LD+ N G LPQ + L L +N+S N+ G IP G +Q + ++N
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 195 bits (499), Expect = 5e-55
Identities = 88/446 (19%), Positives = 164/446 (36%), Gaps = 33/446 (7%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
L L++ N S L L +++ NS + + K + L LD+S N
Sbjct: 75 LKVLNLQHNELSQ-LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 133
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFVGQIFP--NYMNLTRLWALYLYNNNFSGKIKDGLL 127
+ + V +L+ L LSNN + + L L L +N
Sbjct: 134 SSTKLGTQV-QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH 192
Query: 128 RSTELMVLDISNNRLSGHIPSWMGNF---STLQILSMSKNLLEGNIPVQFNNLA--SLQI 182
L L ++N +L + + ++++ LS+S + L F L +L +
Sbjct: 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252
Query: 183 LNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLR 241
L++S NNL+ + L +E+ +L+ N + ++ + L+L +
Sbjct: 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL----KRSFT 308
Query: 242 TLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIV 301
+ L L+ L +++ N + G T + ++ L
Sbjct: 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL--INLKYLSLSNSFTS 366
Query: 302 LRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDL 361
LR ++ +VS ++ L L N + + + F L + LDL
Sbjct: 367 LRTLTNETFVSLAHSPLHILNLTKN---KISKIESDAFSW-----------LGHLEVLDL 412
Query: 362 SNNELTGDIP-SEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG--QI 418
NE+ ++ E L+NI + LS+N SF+ + ++ L L L
Sbjct: 413 GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS 472
Query: 419 PPQLTELHSLSTFDVSYNNLSGPIPD 444
P L +L+ D+S NN++ D
Sbjct: 473 PSPFQPLRNLTILDLSNNNIANINDD 498
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 194 bits (494), Expect = 3e-54
Identities = 85/475 (17%), Positives = 154/475 (32%), Gaps = 70/475 (14%)
Query: 10 LHSLDISRNSFSGKLPQN--MGIVLPKLVYMNISKNSFEGNIPSSIGKMQG--LRLLDVS 65
L L ++ L + + + + +++S + ++ ++ L +LD+S
Sbjct: 197 LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLS 256
Query: 66 SNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDG 125
NN + S LE+ L NN + L + L L + I
Sbjct: 257 YNNLNVVGNDSFA-WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA 315
Query: 126 LLRS---------TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGN--IPVQF 174
L L L++ +N + G + L+ LS+S + F
Sbjct: 316 SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETF 375
Query: 175 NNLA--SLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRG-SALETL 230
+LA L ILN+++N +S L +E L L N +G + +RG + +
Sbjct: 376 VSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 435
Query: 231 DLRIN-----------EHSNLRTLLLRGNYLQG--PIPHQLCHLRKLGIMDISHNRLNGS 277
L N +L+ L+LR L+ P LR L I+D+S+N +
Sbjct: 436 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 495
Query: 278 IPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAV 337
+ + L L N+ L +
Sbjct: 496 NDDMLEGL------------------------------EKLEILDLQHNN------LARL 519
Query: 338 NFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPES 397
Y L + L+L +N DL + ++L N L+
Sbjct: 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 579
Query: 398 FSNLKMIESLDLSHNKLNGQIPPQL-TELHSLSTFDVSYNNLSGPIPDKEQFSTF 451
F+N ++SL+L N + +L+ D+ +N F +
Sbjct: 580 FNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNW 634
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 188 bits (480), Expect = 2e-52
Identities = 81/471 (17%), Positives = 147/471 (31%), Gaps = 71/471 (15%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
L SLD+ N+ S P+ LP L +N+ N + L L + SN+
Sbjct: 51 LTSLDVGFNTISKLEPELCQK-LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSI 109
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKD--GLL 127
+ V +L LDLS+N + L L L L NN + +
Sbjct: 110 QKIKNNPFV-KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF 168
Query: 128 RSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQF---NNLASLQILN 184
++ L L++S+N++ P L L ++ L ++ + S++ L+
Sbjct: 169 ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 228
Query: 185 ISENNLSG---SMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINE----- 236
+S + LS + L +++ L L N L ++F LE L N
Sbjct: 229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF 288
Query: 237 ---------------HSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPAC 281
+ + L L+ L +++ N + G
Sbjct: 289 SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM 348
Query: 282 ITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMT 341
T + + L +SN + S L + L
Sbjct: 349 FTGL------------------INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHI----- 385
Query: 342 KNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIP-ESFSN 400
L+L+ N+++ L ++ L+L N + + + +
Sbjct: 386 -----------------LNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG 428
Query: 401 LKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTF 451
L+ I + LS+NK + SL + L F
Sbjct: 429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 187 bits (476), Expect = 8e-52
Identities = 83/447 (18%), Positives = 165/447 (36%), Gaps = 58/447 (12%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
+ L+++ N N +L +++ N+ P K+ L++L++ N
Sbjct: 27 ITVLNLTHNQLRRLPAANFT-RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRS 129
+ LS C +L L L +N+ ++ L L L +N S ++
Sbjct: 86 SQ-LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 144
Query: 130 TELMVLDISNNRLSGHIPSWMGNF--STLQILSMSKNLLEGNIPVQFNNLASLQILNISE 187
L L +SNN++ + F S+L+ L +S N ++ P F+ + L L ++
Sbjct: 145 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 204
Query: 188 NNLSGSMIST----LNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTL 243
L S+ L +S+ +L L N+ L + TF + +NL L
Sbjct: 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG-----------LKWTNLTML 253
Query: 244 LLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLR 303
L N L L +L + +N + + +
Sbjct: 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL------------------ 295
Query: 304 MYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSN 363
+ L L + +++ + K S++ L+ + L++ +
Sbjct: 296 ------------FNVRYLNLKRS---FTKQSISLASLPKIDDFSFQW--LKCLEHLNMED 338
Query: 364 NELTGDIPSEIGDLQNIHGLNLSHNFLSGS--IPESFSNLKM--IESLDLSHNKLNGQIP 419
N++ G + L N+ L+LS++F S E+F +L + L+L+ NK++
Sbjct: 339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398
Query: 420 PQLTELHSLSTFDVSYNNLSGPIPDKE 446
+ L L D+ N + + +E
Sbjct: 399 DAFSWLGHLEVLDLGLNEIGQELTGQE 425
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 168 bits (427), Expect = 4e-45
Identities = 84/462 (18%), Positives = 151/462 (32%), Gaps = 69/462 (14%)
Query: 10 LHSLDISRNSFSGKLPQNM--GIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSN 67
+ +L +S + S G+ L +++S N+ S + L + N
Sbjct: 224 IRNLSLSNSQLST-TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN 282
Query: 68 NFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYM---------NLTRLWALYLYNNNF 118
N S SL F++ +L+L + I + L L L + +N+
Sbjct: 283 NIQHLFSHSLH-GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341
Query: 119 SGKIKDGLLRSTELMVLDISNNRLSGHIPS----WMGNFSTLQILSMSKNLLEGNIPVQF 174
G + L L +SN+ S + S L IL+++KN + F
Sbjct: 342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF 401
Query: 175 NNLASLQILNISENNLSGSMISTL--NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDL 232
+ L L++L++ N + + L ++ +YL N N+F +L+ L L
Sbjct: 402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461
Query: 233 RINEHS-------------NLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIP 279
R NL L L N + L L KL I+D+ HN L
Sbjct: 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA---- 517
Query: 280 ACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNF 339
+ +L G + + L+ N D + L +
Sbjct: 518 -RLWKHANPGGPIYFLKGLSHLHILNLE-------SNG-----FDEIPVEVFKDLFELKI 564
Query: 340 MTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFS 399
+DL N L S + ++ LNL N ++ + F
Sbjct: 565 -------------------IDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605
Query: 400 -NLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSG 440
+ + LD+ N + ++ ++ + LS
Sbjct: 606 PAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSS 647
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 164 bits (417), Expect = 9e-44
Identities = 74/422 (17%), Positives = 130/422 (30%), Gaps = 73/422 (17%)
Query: 49 IPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRL 108
+P + + +L+++ N + + L LD+ N L L
Sbjct: 19 VPDDLPT--NITVLNLTHNQLRRLPAANFT-RYSQLTSLDVGFNTISKLEPELCQKLPML 75
Query: 109 WALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEG 168
L L +N S T L L + +N + + L L +S N L
Sbjct: 76 KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135
Query: 169 NIPVQFNNLASLQILNISENNLSG---SMISTLNLSSVEHLYLQNNALGGSIPNTFFRGS 225
L +LQ L +S N + + SS++ L L +N + P F
Sbjct: 136 TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH--- 192
Query: 226 ALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLC---HLRKLGIMDISHNRLNGSIPACI 282
L L L L + +LC + + +S+++L+ +
Sbjct: 193 ----------AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242
Query: 283 TNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTK 342
+ ++ + +L + YN+ L+ L + +
Sbjct: 243 LGLKWTNLT---------MLDLS---------YNN-----LNVVGNDSFAWLPQLEY--- 276
Query: 343 NRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSI-------- 394
L N + + L N+ LNL +F SI
Sbjct: 277 ----------------FFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320
Query: 395 -PESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDE 453
SF LK +E L++ N + G T L +L +S + S E F +
Sbjct: 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH 380
Query: 454 SS 455
S
Sbjct: 381 SP 382
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 1e-41
Identities = 67/396 (16%), Positives = 129/396 (32%), Gaps = 64/396 (16%)
Query: 59 LRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNF 118
+ D S ++ L N + L+L++N N+ ++L +L + N
Sbjct: 6 HEVADCSHLKLT-QVPDDLPTN---ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61
Query: 119 SGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLA 178
S + + L VL++ +N LS + L L + N ++ F
Sbjct: 62 SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121
Query: 179 SLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEH 237
+L L++S N LS + + T L +++ L L NN + I +
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL-----------DIFAN 170
Query: 238 SNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYG 297
S+L+ L L N ++ P + +L + +++ +L S+ L + N +
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLT----EKLCLELANTSI-- 224
Query: 298 FDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMA 357
L L + ++ ++ G +
Sbjct: 225 ---------------------RNLSLSNS------------QLSTTSNTTFLGLKWTNLT 251
Query: 358 GLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHN----- 412
LDLS N L L + L +N + S L + L+L +
Sbjct: 252 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 311
Query: 413 ----KLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD 444
L L L ++ N++ G +
Sbjct: 312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSN 347
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 6e-37
Identities = 55/308 (17%), Positives = 100/308 (32%), Gaps = 27/308 (8%)
Query: 7 QHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSS 66
+ IS S + L L ++N+ N G + + L+ L +S+
Sbjct: 304 KRSFTKQSISLASLPKIDDFSFQ-WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362
Query: 67 NNFAGELSQSLVINCF---SLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIK 123
+ + + L L+L+ N + L L L L N ++
Sbjct: 363 SFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422
Query: 124 DGLLRS-TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEG--NIPVQFNNLASL 180
R + + +S N+ + +LQ L + + L+ + P F L +L
Sbjct: 423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482
Query: 181 QILNISENNLSGSMISTL-NLSSVEHLYLQNN--------ALGGSIPNTFFRGSALETLD 231
IL++S NN++ L L +E L LQ+N A G S L L+
Sbjct: 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542
Query: 232 LR-----------INEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPA 280
L + L+ + L N L + L +++ N +
Sbjct: 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602
Query: 281 CITNMLFS 288
+
Sbjct: 603 VFGPAFRN 610
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 6e-37
Identities = 83/465 (17%), Positives = 152/465 (32%), Gaps = 86/465 (18%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
L LD+S N+ + + LP+L Y + N+ + S+ + +R L++ +
Sbjct: 250 LTMLDLSYNNLNVVGNDSFA-WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 308
Query: 70 AGELSQ--------SLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGK 121
+S LE L++ +N+ G + L L L L N+ S +
Sbjct: 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368
Query: 122 IKDGL----LRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQ-FNN 176
L + L +L+++ N++S L++L + N + + Q +
Sbjct: 369 TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG 428
Query: 177 LASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGG--SIPNTFFRGSALETLDLR 233
L ++ + +S N ++ + S++ L L+ AL S P+ F L LDL
Sbjct: 429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 488
Query: 234 INE-----------HSNLRTLLLRGNYLQ--------GPIPHQLCHLRKLGIMDISHNRL 274
N L L L+ N L G + L L L I+++ N
Sbjct: 489 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548
Query: 275 NGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGAL 334
+ ++ + L N L L
Sbjct: 549 DEIPVEVFKDL------------------------------FELKIIDLGLN---NLNTL 575
Query: 335 VAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGD-LQNIHGLNLSHNFLSGS 393
A F + +S L+L N +T G +N+ L++ N +
Sbjct: 576 PASVFNNQVSLKS-----------LNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624
Query: 394 IPESFSNLKMIESLDLSHNKLNGQI----PPQLTELHSLSTFDVS 434
+ I + +L+ PP + FD S
Sbjct: 625 CESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGF-PVRLFDTS 668
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 4e-20
Identities = 48/281 (17%), Positives = 84/281 (29%), Gaps = 60/281 (21%)
Query: 179 SLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHS 238
S ++ + S L+ + +++ L L +N L F R S L +LD+
Sbjct: 5 SHEVADCSHLKLTQ--VPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG----- 57
Query: 239 NLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGF 298
N + P L L ++++ HN L+
Sbjct: 58 --------FNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC------------- 96
Query: 299 DIVLRMYLDDAYVSNYYNSTVELLLDGN-----DGRMLGALVAVNF--MTKNRYESYKGD 351
+ EL L N + ++ N S K
Sbjct: 97 -----------------TNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG 139
Query: 352 ILELMAGL---DLSNNELTGDIPSEIGDLQNIH--GLNLSHNFLSGSIPESFSNLKMIES 406
+ L LSNN++ E+ N L LS N + P F + +
Sbjct: 140 TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG 199
Query: 407 LDLSHNKLNGQIPPQLTE---LHSLSTFDVSYNNLSGPIPD 444
L L++ +L + +L S+ +S + LS
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 183 bits (467), Expect = 8e-51
Identities = 69/471 (14%), Positives = 148/471 (31%), Gaps = 84/471 (17%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
L I+ + + ++ I K + N+ + ++ ++ LR + ++ F
Sbjct: 161 LIKDCINSDPQQKSIKKSSRI-TLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPF 218
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRS 129
E C + E + + NL L + +YN K+ L
Sbjct: 219 VAE------NICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272
Query: 130 TELMVLDISNNRL--------SGHIPSWMGNFSTLQILSMSKN-LLEGNIPVQFNNLASL 180
E+ +++++ NR + +QI+ + N L + + L
Sbjct: 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKL 332
Query: 181 QILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINE---- 236
+L N L G + + + + L L N + N +E L N+
Sbjct: 333 GMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYI 392
Query: 237 --------HSNLRTLLLRGNYLQG-------PIPHQLCHLRKLGIMDISHNRLNGSIPAC 281
S + + N + P+ + +++S+N+++
Sbjct: 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL 452
Query: 282 ITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMT 341
+ + + L GN ML + +
Sbjct: 453 FSTG------------------------------SPLSSINLMGN---MLTEIPKNSLKD 479
Query: 342 KNRYESYKGDILELMAGLDLSNNELTGDIPSEI--GDLQNIHGLNLSHNFLSGSIPESFS 399
+N L+ +DL N+LT + + L + G++LS+N S P
Sbjct: 480 ENENFKN----TYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPL 533
Query: 400 NLKMIESL------DLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD 444
N ++ D N+ + P +T SL+ + N++ + +
Sbjct: 534 NSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNE 583
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 6e-48
Identities = 62/479 (12%), Positives = 142/479 (29%), Gaps = 105/479 (21%)
Query: 32 LPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSL---VINCFSLEWLD 88
++ +++ G +P +IG++ L +L + S+ + S E
Sbjct: 80 NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139
Query: 89 LSNNNFVGQIFPN--YMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHI 146
++ + + L + ++ IK + + + +N ++ +
Sbjct: 140 KMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-V 198
Query: 147 PSWMGNFSTLQILSMSKNLLEG-------------------NIPVQFNNLASLQILNISE 187
+ + L+ M + ++++NL L + +
Sbjct: 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN 258
Query: 188 NNLSGSMISTL-NLSSVEHLYLQNNAL--------GGSIPNTFFRGSALETLDLRINE-- 236
+ + L L ++ + + N G ++ + + N
Sbjct: 259 CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318
Query: 237 ----------HSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNML 286
L L N L+G +P KL +++++N++ IPA
Sbjct: 319 TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE-IPANFCGFT 376
Query: 287 FSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYE 346
L N L + +
Sbjct: 377 -----------------------------EQVENLSFAHN---KLKYIPNIFDAKS---- 400
Query: 347 SYKGDILELMAGLDLSNNELTG-------DIPSEIGDLQNIHGLNLSHNFLSGSIPESFS 399
+ +M+ +D S NE+ + N+ +NLS+N +S E FS
Sbjct: 401 ------VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFS 454
Query: 400 NLKMIESLDLSHNKLNG-------QIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTF 451
+ S++L N L + L++ D+ +N L+ + D + +T
Sbjct: 455 TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTL 512
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 2e-39
Identities = 47/297 (15%), Positives = 100/297 (33%), Gaps = 34/297 (11%)
Query: 10 LHSLDISRNSF-SGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNN 68
+ + I N+ + + ++ + KL + N EG +P+ G L L+++ N
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQ-KMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQ 364
Query: 69 FAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYM---NLTRLWALYLYNNNFSG----- 120
+ + +E L ++N + PN +++ + A+ N
Sbjct: 365 ITE-IPANFCGFTEQVENLSFAHNKL--KYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421
Query: 121 --KIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEG-------NIP 171
+ + + +++SNN++S S L +++ N+L +
Sbjct: 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481
Query: 172 VQFNNLASLQILNISENNLSG--SMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALET 229
F N L +++ N L+ L + + L N+ P S L+
Sbjct: 482 ENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKG 540
Query: 230 LDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNML 286
+R +GN P + L + I N + + IT +
Sbjct: 541 FGIRNQ-------RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKITPNI 589
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 5e-33
Identities = 44/360 (12%), Positives = 108/360 (30%), Gaps = 53/360 (14%)
Query: 104 NLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSG----HIPSWMGNFSTLQIL 159
+ R+ L L SG++ D + + TEL VL + ++ P + + +
Sbjct: 79 SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138
Query: 160 SMSKNLLEGNIP--VQFNNLASLQILNISENNLSGSM-ISTLNLSSVEHLYLQNNALGGS 216
+ + + + L I+ + S+ S+ + +N +
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI-TF 197
Query: 217 IPNTFFRGSALETLDLRINE------HSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDIS 270
+ R + L + + + +L+ L +++
Sbjct: 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY 257
Query: 271 HNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRM 330
+ +P + + ++ + N S +L D
Sbjct: 258 NCPNLTKLPTFLKAL--PEMQLINVA---------------CNRGISGEQLKDDWQALAD 300
Query: 331 LGALVAVNFMTKNRYESYKGDILELMAGLDLSNNEL-TGDIPSEIGDLQNIHGLNLSHNF 389
+ E + + + N L T + + + ++ + L +N
Sbjct: 301 AP-------------------VGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ 341
Query: 390 LSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFS 449
L G +P F + + SL+L++N++ + ++N L IP+
Sbjct: 342 LEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAK 399
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 6e-30
Identities = 37/254 (14%), Positives = 80/254 (31%), Gaps = 27/254 (10%)
Query: 10 LHSLDISRNSFSGKLPQNMGIV-LPKLVYMNISKNSFEG-------NIPSSIGKMQGLRL 61
+ +L + N +P + + ++ S N + + K +
Sbjct: 379 VENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437
Query: 62 LDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVG-------QIFPNYMNLTRLWALYLY 114
+++S+N + + L ++L N N+ N L ++ L
Sbjct: 438 INLSNNQISKFPKELFS-TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496
Query: 115 NNNFSGKIKD-GLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNL------LE 167
N + D L+ +D+S N S P+ N STL+ +
Sbjct: 497 FNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTL 555
Query: 168 GNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSAL 227
P SL L I N++ ++ ++ L +++N +
Sbjct: 556 REWPEGITLCPSLTQLQIGSNDIRK--VNEKITPNISVLDIKDNPNISIDLSYVCPYIEA 613
Query: 228 ETLDLRINEHSNLR 241
L ++ ++R
Sbjct: 614 GMYMLFYDKTQDIR 627
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 1e-29
Identities = 33/288 (11%), Positives = 81/288 (28%), Gaps = 48/288 (16%)
Query: 39 NISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQ- 97
N + + S+ + L + +G + ++ LE L L ++
Sbjct: 63 NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIG-QLTELEVLALGSHGEKVNE 121
Query: 98 ---IFPNYMNLTRLWALYLYNNNFSGKI--KDGLLRSTELMVLDISNNRLSGHIPSWMGN 152
++ D ++L+ I+++ I
Sbjct: 122 RLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI 181
Query: 153 FSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-------------- 198
+ N + + L L+ + + I
Sbjct: 182 TLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240
Query: 199 ------NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINE---------------- 236
NL + + + N +P ++ +++ N
Sbjct: 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALAD 300
Query: 237 ---HSNLRTLLLRGNYLQ-GPIPHQLCHLRKLGIMDISHNRLNGSIPA 280
++ + + N L+ P+ L ++KLG+++ +N+L G +PA
Sbjct: 301 APVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA 348
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 95.9 bits (239), Expect = 5e-21
Identities = 32/267 (11%), Positives = 78/267 (29%), Gaps = 34/267 (12%)
Query: 195 ISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPI 254
+S + V L L+ G +P+ + + LE L L + + N
Sbjct: 75 VSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSH--------GEKVNER-LFG 125
Query: 255 PHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIV------LRMYLDD 308
P + + FS + + R+ L D
Sbjct: 126 PKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185
Query: 309 AYVSNYYNSTVELLLDGNDGRMLGALVA--VNFMTKNRYESYKGDILELMAGLDLSNNEL 366
+ N+ + + L +M + + + +I E + +
Sbjct: 186 TQIGQLSNNITFVSKA------VMRLTKLRQFYMGNSPFVA--ENICEAWENENSEYAQQ 237
Query: 367 TGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKL--------NGQI 418
+ +L+++ + + + +P L ++ ++++ N+ + Q
Sbjct: 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQA 297
Query: 419 PPQLTELHSLSTFDVSYNNL-SGPIPD 444
+ + YNNL + P+
Sbjct: 298 LADAPVGEKIQIIYIGYNNLKTFPVET 324
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 3e-15
Identities = 13/92 (14%), Positives = 31/92 (33%), Gaps = 10/92 (10%)
Query: 359 LDLSNNELTGDIPSEIGDLQNI------HGLNLSHNFLSGSIPESFSNLKMIESLDLSHN 412
+DLS N + P++ + + + + N PE + + L + N
Sbjct: 518 IDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576
Query: 413 KLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD 444
+ + ++ ++S D+ N
Sbjct: 577 DIRK-VNEKI--TPNISVLDIKDNPNISIDLS 605
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 3e-14
Identities = 26/169 (15%), Positives = 57/169 (33%), Gaps = 25/169 (14%)
Query: 10 LHSLDISRNSFSGKLPQNMGIV-LPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNN 68
L S+D+ N + L + LP LV +++S NSF P+ L+ + +
Sbjct: 490 LTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQ- 546
Query: 69 FAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLR 128
D N + + L L + +N+ + + +
Sbjct: 547 ------------------RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKITP 587
Query: 129 STELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNL 177
+ + VLDI +N S++ + + + + + ++
Sbjct: 588 N--ISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDI 634
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 1e-11
Identities = 11/87 (12%), Positives = 24/87 (27%), Gaps = 3/87 (3%)
Query: 353 LELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHN 412
+ D N + P I ++ L + N + + N+ LD+ N
Sbjct: 541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNI---SVLDIKDN 597
Query: 413 KLNGQIPPQLTELHSLSTFDVSYNNLS 439
+ + + Y+
Sbjct: 598 PNISIDLSYVCPYIEAGMYMLFYDKTQ 624
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 9e-10
Identities = 10/121 (8%), Positives = 29/121 (23%), Gaps = 6/121 (4%)
Query: 359 LDLSNNELTGDIPSEIGDLQ--NIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG 416
++ ++ + SI +S + N +
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF 197
Query: 417 QIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGPAINKGCTNLPE 476
+ + L L F + + + + E+S + +L +
Sbjct: 198 -VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN---ENSEYAQQYKTEDLKWDNLKDLTD 253
Query: 477 L 477
+
Sbjct: 254 V 254
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 4e-09
Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 4/96 (4%)
Query: 360 DLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ-- 417
+ + + + GL+L SG +P++ L +E L L +
Sbjct: 63 NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122
Query: 418 --IPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTF 451
P ++ S + D + F
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDF 158
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 179 bits (455), Expect = 2e-49
Identities = 88/469 (18%), Positives = 152/469 (32%), Gaps = 44/469 (9%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
+LD+S N + P+L +++S+ + + + L L ++ N
Sbjct: 30 TKNLDLSFNPLRHLGSYSFF-SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNF-SGKIKDGLLR 128
L+ SL+ L N +L L L + +N S K+ +
Sbjct: 89 QS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 129 STELMVLDISNNRLSGHIPSWMGNFSTLQI----LSMSKNLLEGNIPVQFNNLASLQILN 184
T L LD+S+N++ + + + + L +S N + P F + L L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLT 206
Query: 185 ISENNLSGSMISTL--NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRT 242
+ N S +++ T L+ +E L F SALE L NL
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL-------CNLTI 259
Query: 243 LLLRGNYL---QGPIPHQLCHLRKLGIMDISHNRLNGSIPAC---------ITNMLFSRV 290
R YL I L + + + + N F +
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF 319
Query: 291 ENGYLYGFD--IVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNF--------- 339
L +A+ S L L N G +F
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD 379
Query: 340 MTKNRYESYKGDILELMA--GLDLSNNELTGDIPSEI-GDLQNIHGLNLSHNFLSGSIPE 396
++ N + + L L LD ++ L + L+N+ L++SH +
Sbjct: 380 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439
Query: 397 SFSNLKMIESLDLSHNKLNGQIPPQ-LTELHSLSTFDVSYNNLSGPIPD 444
F+ L +E L ++ N P TEL +L+ D+S L P
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 172 bits (437), Expect = 8e-47
Identities = 81/461 (17%), Positives = 148/461 (32%), Gaps = 78/461 (16%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKL----VYMNISKNSFEGNIPSSIGKMQGLRLLDVS 65
L LD+S N ++ VL ++ + +++S N P + +++ L L +
Sbjct: 151 LEHLDLSSNKIQSIYCTDLR-VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLTLR 208
Query: 66 SNNFAGELSQSLVINCFSLEWLDLSNNNFVGQI---FPNYMNLTRLWALYL------YNN 116
+N + + ++ + LE L F + + L L L + Y +
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268
Query: 117 NFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNN 176
+ I D T + + + + Q L + ++ +
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF--SYNFGWQHLELVNCKFGQFPTLKLKS 326
Query: 177 LASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALG--GSIPNTFFRGSALETLDLRI 234
L L + N S ++L S+E L L N L G + F ++L+ LDL
Sbjct: 327 LKRLTFTSNKGGNA----FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382
Query: 235 NEHS----------NLRTLLLRGNYLQGPIPHQ-LCHLRKLGIMDISHNRLNGSIPACIT 283
N L L + + L+ LR L +DISH +
Sbjct: 383 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 442
Query: 284 NMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKN 343
+ +S L + GN + F
Sbjct: 443 GL------------------------------SSLEVLKMAGN--SFQENFLPDIFTE-- 468
Query: 344 RYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKM 403
L + LDLS +L P+ L ++ LN+SHN + L
Sbjct: 469 ---------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 519
Query: 404 IESLDLSHNKLNGQIPPQLTEL-HSLSTFDVSYNNLSGPIP 443
++ LD S N + +L SL+ +++ N+ +
Sbjct: 520 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 560
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 157 bits (398), Expect = 2e-41
Identities = 81/420 (19%), Positives = 140/420 (33%), Gaps = 53/420 (12%)
Query: 49 IPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRL 108
IP ++ + LD+S N S S + L+ LDLS Y +L+ L
Sbjct: 22 IPDNL--PFSTKNLDLSFNPLRHLGSYSFF-SFPELQVLDLSRCEIQTIEDGAYQSLSHL 78
Query: 109 WALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEG 168
L L N + L L L+ +G+ TL+ L+++ NL++
Sbjct: 79 STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138
Query: 169 -NIPVQFNNLASLQILNISENNLSGSMISTL-NLSS----VEHLYLQNNALGGSIPNTFF 222
+P F+NL +L+ L++S N + + L L L L N + P F
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF- 197
Query: 223 RGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCH-LRKLGIMDISHNRLNGSIPAC 281
+ L L LR N+ + L L + +
Sbjct: 198 -------------KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN-- 242
Query: 282 ITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELL----------LDGN----- 326
+ + L G + AY+ Y + ++L L
Sbjct: 243 -----LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297
Query: 327 -DGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNL 385
D + + ++ + L+ + L ++N+ DL ++ L+L
Sbjct: 298 KDFSYNFGWQHLE-LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDL 354
Query: 386 SHNFLS--GSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIP 443
S N LS G +S ++ LDLS N + + L L D ++NL
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE 413
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 3e-36
Identities = 52/288 (18%), Positives = 100/288 (34%), Gaps = 27/288 (9%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
+ S + + + ++ + F + ++ L N
Sbjct: 284 VSSFSLVSVTIERVKDFSY---NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 340
Query: 70 AGELSQSLVINCFSLEWLDLSNN--NFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLL 127
E ++ SLE+LDLS N +F G + T L L L N + L
Sbjct: 341 FSE------VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFL 393
Query: 128 RSTELMVLDISNNRLSGHIPSWM-GNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNIS 186
+L LD ++ L + + L L +S FN L+SL++L ++
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453
Query: 187 ENNLSGSMISTL--NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRIN--------- 235
N+ + + + L ++ L L L P F S+L+ L++ N
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 513
Query: 236 --EHSNLRTLLLRGNYLQGPIPHQLCHL-RKLGIMDISHNRLNGSIPA 280
++L+ L N++ +L H L ++++ N +
Sbjct: 514 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 561
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 3e-32
Identities = 59/253 (23%), Positives = 101/253 (39%), Gaps = 16/253 (6%)
Query: 10 LHSLDISRNSFSGKLPQNMGIV-LPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNN 68
L LD+SRN S K + L Y+++S N + S+ ++ L LD +N
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSN 407
Query: 69 FAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLR 128
S+ ++ +L +LD+S+ + + L+ L L + N+F +
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467
Query: 129 S-TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISE 187
L LD+S +L P+ + S+LQ+L+MS N + L SLQ+L+ S
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 527
Query: 188 NNLSGSMISTL--NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLL 245
N++ S L SS+ L L N + + F + R LL+
Sbjct: 528 NHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI-----------KDQRQLLV 576
Query: 246 RGNYLQGPIPHQL 258
++ P
Sbjct: 577 EVERMECATPSDK 589
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 2e-26
Identities = 38/202 (18%), Positives = 73/202 (36%), Gaps = 3/202 (1%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
L LD ++ ++ + L L+Y++IS + L +L ++ N+F
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRS 129
+ +L +LDLS + +L+ L L + +NNF
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 517
Query: 130 TELMVLDISNNRLSGHIPSWMGN-FSTLQILSMSKNLLEGNIPVQ--FNNLASLQILNIS 186
L VLD S N + + + S+L L++++N Q + + L +
Sbjct: 518 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVE 577
Query: 187 ENNLSGSMISTLNLSSVEHLYL 208
+ + S V L +
Sbjct: 578 VERMECATPSDKQGMPVLSLNI 599
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 4e-26
Identities = 52/304 (17%), Positives = 96/304 (31%), Gaps = 34/304 (11%)
Query: 3 LTSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPS-SIGKMQGLRL 61
L SLD+S N + P +L + + N N+ I + GL +
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGA--FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEV 229
Query: 62 LDVSSNNFAGE--LSQSLVINCFSLEWLDLSNNN------FVGQIFPNYMNLTRLWALYL 113
+ F E L + L L + ++ I + LT + + L
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289
Query: 114 YNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQ 173
+ L++ N + + + L S +G
Sbjct: 290 VSVTIERVKDFSYNFG--WQHLELVNCKFGQFPTLKLKSLKRLTFTS-----NKGGNAFS 342
Query: 174 FNNLASLQILNISENNLSGSMI---STLNLSSVEHLYLQNNALGGSIPNTFFRGSALETL 230
+L SL+ L++S N LS S +S+++L L N + + + F LE L
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHL 401
Query: 231 DLRINEHS------------NLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSI 278
D + + NL L + + + L L ++ ++ N +
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461
Query: 279 PACI 282
I
Sbjct: 462 LPDI 465
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 7e-17
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 359 LDLSNNELTGDIPSEI-GDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 417
L ++ N + +I +L+N+ L+LS L P +F++L ++ L++SHN
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509
Query: 418 IPPQLTELHSLSTFDVSYNNLSGPIPD 444
L+SL D S N++
Sbjct: 510 DTFPYKCLNSLQVLDYSLNHIMTSKKQ 536
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 8e-04
Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 3/100 (3%)
Query: 8 HGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQG-LRLLDVSS 66
L L++S N+F L L ++ S N + + L L+++
Sbjct: 494 SSLQVLNMSHNNFFSLDTFPYKC-LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552
Query: 67 NNFAGELS-QSLVINCFSLEWLDLSNNNFVGQIFPNYMNL 105
N+FA QS + L + + +
Sbjct: 553 NDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM 592
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 171 bits (435), Expect = 1e-45
Identities = 74/463 (15%), Positives = 154/463 (33%), Gaps = 63/463 (13%)
Query: 10 LHSLDISRNSFSGKL----PQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVS 65
L+ D+ +++ + + + K + N I +I ++ L+++ +
Sbjct: 398 LNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFA 456
Query: 66 SNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDG 125
++ F E + ++ NL L + LYN ++ D
Sbjct: 457 NSPFTY------DNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF 510
Query: 126 LLRSTELMVLDISNNRLSG---------HIPSWMGNFSTLQILSMSKNLLEG-NIPVQFN 175
L EL L+I+ NR + +QI M N LE
Sbjct: 511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQ 570
Query: 176 NLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRI 234
+ L +L+ N + + + L L N + IP F +
Sbjct: 571 KMVKLGLLDCVHNKVRH--LEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFT--------- 618
Query: 235 NEHSNLRTLLLRGNYLQG-PIPHQLCHLRKLGIMDISHNRLNG---SIPACITNMLFSRV 290
+ L N L+ P + +G +D S+N++ +I + +
Sbjct: 619 ---DQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675
Query: 291 ENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKG 350
L +I + + ++L N ++ ++ + K+
Sbjct: 676 STVTLSYNEIQ---KFPTELFATGSPIS-TIILSNN---LMTSIPENSLKPKDGNYKN-- 726
Query: 351 DILELMAGLDLSNNELTGDIPSEI--GDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLD 408
L+ +DL N+LT + + L + +++S+N S S P N +++
Sbjct: 727 --TYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFG 782
Query: 409 LSH------NKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDK 445
+ H N++ Q P +T SL + N++ + +K
Sbjct: 783 IRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEK 824
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 162 bits (412), Expect = 1e-42
Identities = 63/447 (14%), Positives = 137/447 (30%), Gaps = 49/447 (10%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
L + + + F+ N N S ++ L +++ +
Sbjct: 450 LQIIYFANSPFTYDNIAVDWEDA------NSDYAKQYENEELSWSNLKDLTDVELYNCPN 503
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFVG---------QIFPNYMNLTRLWALYLYNNNFSG 120
+L L + L+ L+++ N + ++ + ++ Y+ NN
Sbjct: 504 MTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE 562
Query: 121 KIKDGLLRS-TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQ-FNNLA 178
L+ +L +LD +N++ H+ + G L L + N +E IP
Sbjct: 563 FPASASLQKMVKLGLLDCVHNKVR-HLEA-FGTNVKLTDLKLDYNQIE-EIPEDFCAFTD 619
Query: 179 SLQILNISENNLSG--SMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINE 236
++ L S N L ++ + ++ + + N +G N + +
Sbjct: 620 QVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI------ 673
Query: 237 HSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGY-L 295
N T+ L N +Q + + +S+N + SIP +N Y L
Sbjct: 674 --NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM-TSIPENSLKPKDGNYKNTYLL 730
Query: 296 YGFDIV---LRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDI 352
D+ L DD + + + + N + +
Sbjct: 731 TTIDLRFNKLTSLSDDFRATTLPYLS-NMDVSYN---CFSSFPTQPLNSSQLKA------ 780
Query: 353 LELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHN 412
+ D N + P+ I ++ L + N + + L LD++ N
Sbjct: 781 FGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQL---YILDIADN 837
Query: 413 KLNGQIPPQLTELHSLSTFDVSYNNLS 439
+ + + Y+
Sbjct: 838 PNISIDVTSVCPYIEAGMYVLLYDKTQ 864
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 155 bits (392), Expect = 4e-40
Identities = 66/468 (14%), Positives = 152/468 (32%), Gaps = 85/468 (18%)
Query: 32 LPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSN 91
++ ++++ +G +P +IG++ L++L +++ + + + +
Sbjct: 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETV-SGRLFGDEELTPDMSEERK 380
Query: 92 NNFVGQIFPNY------MNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGH 145
+ + +NL+ L + N IK S + + NR++
Sbjct: 381 HRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF- 439
Query: 146 IPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVE 204
I + + LQI+ + + + + N + + NL +
Sbjct: 440 ISKAIQRLTKLQIIYFANSPFTYDNI-----AVDWEDANSDYAKQYENEELSWSNLKDLT 494
Query: 205 HLYLQNNALGGSIPNTFFRGSALETLDLRIN--------------------EHSNLRTLL 244
+ L N +P+ + L++L++ N ++
Sbjct: 495 DVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY 554
Query: 245 LRGNYLQG-PIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLR 303
+ N L+ P L + KLG++D HN++ + A + L
Sbjct: 555 MGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEA-FGTN--------------VKLT 598
Query: 304 M-YLDD-------AYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILEL 355
LD + + L N L + + + +
Sbjct: 599 DLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK---LKYIPNIFNAKS----------VYV 645
Query: 356 MAGLDLSNNELTGDIPS-----EIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLS 410
M +D S N++ + + + N + LS+N + E F+ I ++ LS
Sbjct: 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILS 705
Query: 411 HNKL-------NGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTF 451
+N + + L+T D+ +N L+ + D + +T
Sbjct: 706 NNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTL 752
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 153 bits (387), Expect = 2e-39
Identities = 76/493 (15%), Positives = 143/493 (29%), Gaps = 105/493 (21%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
+ L ++ G++P +G L +L ++ +S + + + + +
Sbjct: 325 VTGLSLAGFGAKGRVPDAIG-QLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRI 383
Query: 70 AGELSQSLVINCFSLEWLDLSNN----------------------------NFVGQIFPN 101
+ + L DL + N + I
Sbjct: 384 RMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA 443
Query: 102 YMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSM 161
LT+L +Y N+ F+ + + + + + N L + +
Sbjct: 444 IQRLTKLQIIYFANSPFTYDNI-----AVDWEDANSDYAKQYENEELSWSNLKDLTDVEL 498
Query: 162 SKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL----------NLSSVEHLYLQNN 211
+P +L LQ LNI+ N + ++ Y+ N
Sbjct: 499 YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558
Query: 212 ALGGSIPNTFFRG-SALETLDLRIN---------EHSNLRTLLLRGNYLQGPIPHQLC-H 260
L + + L LD N + L L L N ++ IP C
Sbjct: 559 NLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEE-IPEDFCAF 617
Query: 261 LRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVE 320
++ + SHN+L IP +
Sbjct: 618 TDQVEGLGFSHNKLK-YIPNIFNAKSVYVMG----------------------------S 648
Query: 321 LLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNI 380
+ N +G+ + + Y+ + + LS NE+ I
Sbjct: 649 VDFSYN---KIGSEGRNISCSMDDYKGIN------ASTVTLSYNEIQKFPTELFATGSPI 699
Query: 381 HGLNLSHNFLS-------GSIPESFSNLKMIESLDLSHNKLNGQIPPQL--TELHSLSTF 431
+ LS+N ++ ++ N ++ ++DL NKL + T L LS
Sbjct: 700 STIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNM 758
Query: 432 DVSYNNLSGPIPD 444
DVSYN S P
Sbjct: 759 DVSYNCFSS-FPT 770
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 3e-32
Identities = 57/379 (15%), Positives = 120/379 (31%), Gaps = 51/379 (13%)
Query: 80 NCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISN 139
N + L L+ G++ LT L L ++ + + + +
Sbjct: 321 NNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERK 380
Query: 140 NRLSGHIPS-WMGNFSTLQILSMSKNLLEGN---IPVQFNNLASLQILNI--SENNLSGS 193
+R+ H ++ L + + ++ + N P++ ++ SL+ I N ++
Sbjct: 381 HRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFI 440
Query: 194 MISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEH------SNLRTLLLRG 247
+ L+ ++ +Y N+ + + + NE +L + L
Sbjct: 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN 500
Query: 248 NYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLD 307
+P L L +L ++I+ NR + +
Sbjct: 501 CPNMTQLPDFLYDLPELQSLNIACNRGIS-AAQLKADWTRLADDEDTG------------ 547
Query: 308 DAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELT 367
+ N+ A ++ M K L L LD +N++
Sbjct: 548 --------PKIQIFYMGYNNLEEFPASASLQKMVK----------LGL---LDCVHNKVR 586
Query: 368 GDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPP--QLTEL 425
G + L L +N + + + +E L SHNKL IP +
Sbjct: 587 --HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSV 643
Query: 426 HSLSTFDVSYNNLSGPIPD 444
+ + + D SYN + +
Sbjct: 644 YVMGSVDFSYNKIGSEGRN 662
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 3e-23
Identities = 44/357 (12%), Positives = 108/357 (30%), Gaps = 52/357 (14%)
Query: 100 PNYMNLTRLW-ALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQI 158
+Y L +W AL N + + + S + + + N +
Sbjct: 269 KDYKALKAIWEALDGKNWRYYSGTINNTIHSLN-WNFNKELDMWGDQPGVDLDNNGRVTG 327
Query: 159 LSMSKNLLEGNIPVQFNNLASLQILNISENNLSGS-MISTLNLSSVEHLYLQNNALGGSI 217
LS++ +G +P L L++L+ ++ + S + + + + + +
Sbjct: 328 LSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHY 387
Query: 218 PNTFFRG-SALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNG 276
F L DL + + R ++ L+ I +++ NR+
Sbjct: 388 KKMFLDYDQRLNLSDLLQD-------AINRNPEMKPIKKDSRISLKDTQIGNLT-NRI-T 438
Query: 277 SIPACITNMLFSRVENGYLYGFDIVLRM-YLDDAYVSNYYNSTVELLLDGNDGRMLGAL- 334
I I + L++ Y ++ + + + + +
Sbjct: 439 FISKAIQRLTK--------------LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE 484
Query: 335 VAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSG-- 392
++ + + ++L N +P + DL + LN++ N
Sbjct: 485 LSWSNLKDLTD-------------VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA 531
Query: 393 -------SIPESFSNLKMIESLDLSHNKLNG-QIPPQLTELHSLSTFDVSYNNLSGP 441
+ + I+ + +N L L ++ L D +N +
Sbjct: 532 QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL 588
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 95.3 bits (237), Expect = 1e-20
Identities = 38/230 (16%), Positives = 73/230 (31%), Gaps = 31/230 (13%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLP-----KLVYMNISKNSFEGNIPSSIGKMQGLRLLDV 64
+ S+D S N +N+ + + +S N + + + +
Sbjct: 646 MGSVDFSYNKIGS-EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIIL 704
Query: 65 SSNNF------AGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYM---NLTRLWALYLYN 115
S+N + + N + L +DL N + L L + +
Sbjct: 705 SNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS--LSDDFRATTLPYLSNMDVSY 762
Query: 116 NNFSGKIKDGLLRSTELMVLDI------SNNRLSGHIPSWMGNFSTLQILSMSKNLLEGN 169
N FS L S++L I NR+ P+ + +L L + N +
Sbjct: 763 NCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-K 820
Query: 170 IPVQFNNLASLQILNISENNLS----GSMISTLNLSSVEHLYLQNNALGG 215
+ L IL+I++N S+ + LY + + G
Sbjct: 821 VD--EKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRG 868
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 94.6 bits (235), Expect = 2e-20
Identities = 43/340 (12%), Positives = 100/340 (29%), Gaps = 59/340 (17%)
Query: 116 NNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFN 175
+ IKD LD N R + + + ++ V +
Sbjct: 262 KETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWN-FNKELDMWGDQPGVDLD 320
Query: 176 NLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRI 234
N + L+++ G + + L+ ++ L ++ S + + R
Sbjct: 321 NNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERK 380
Query: 235 NEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGY 294
+ + L + ++L + D+ + +N N
Sbjct: 381 HRIRMHYKKMF------------LDYDQRLNLSDLLQDAIN---------------RNPE 413
Query: 295 LYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILE 354
+ R+ L D + N N + + + L +
Sbjct: 414 MKPIKKDSRISLKDTQIGNLTNRITFI------SKAIQRLTKLQI--------------- 452
Query: 355 LMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKL 414
+ +N+ T D + + N + + S+SNLK + ++L +
Sbjct: 453 ----IYFANSPFTYDNIAVDWED-----ANSDYAKQYENEELSWSNLKDLTDVELYNCPN 503
Query: 415 NGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDES 454
Q+P L +L L + +++ N K ++ +
Sbjct: 504 MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADD 543
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 7e-07
Identities = 17/148 (11%), Positives = 33/148 (22%), Gaps = 1/148 (0%)
Query: 330 MLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNF 389
A V + Y + + LD N + N N +
Sbjct: 252 TKDANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLN-WNFNKELDM 310
Query: 390 LSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFS 449
N + L L+ G++P + +L L ++ +
Sbjct: 311 WGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEE 370
Query: 450 TFDESSYRGNLFLCGPAINKGCTNLPEL 477
+ S + L
Sbjct: 371 LTPDMSEERKHRIRMHYKKMFLDYDQRL 398
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 162 bits (412), Expect = 2e-43
Identities = 88/461 (19%), Positives = 161/461 (34%), Gaps = 47/461 (10%)
Query: 8 HGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSN 67
L LD++R + ++ +L + ++ N +++ + L+ L
Sbjct: 57 INLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT 115
Query: 68 NFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGL- 126
+ + + N +LE L L +N+ P +L L NN K+ +
Sbjct: 116 GISS-IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS 174
Query: 127 -LRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIP--VQFNNLASLQIL 183
L+ + L+++ N ++ I + + Q L+ I ++ + + SL +
Sbjct: 175 SLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLG 233
Query: 184 NISENNL---SGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINE---- 236
+ + S ++ L SVE + LQ + NTF S L+ LDL
Sbjct: 234 TFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL 293
Query: 237 ------HSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRV 290
S L+ L+L N + + L + I N +
Sbjct: 294 PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC-------- 345
Query: 291 ENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKG 350
L + + + L ++ R L L ++N ++ N S K
Sbjct: 346 ----LENLENLRELDLS-------HDDIETSDCCNLQLRNLSHLQSLN-LSYNEPLSLKT 393
Query: 351 DILELMAGL---DLSNNELTG-DIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIES 406
+ + L DL+ L D S +L + LNLSH+ L S + F L ++
Sbjct: 394 EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH 453
Query: 407 LDLSHNKL---NGQIPPQLTELHSLSTFDVSYNNLSGPIPD 444
L+L N N Q L L L +S+ +LS
Sbjct: 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 5e-42
Identities = 81/454 (17%), Positives = 154/454 (33%), Gaps = 40/454 (8%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
L+ S N L L ++++++ + L L +++N
Sbjct: 35 TECLEFSFNVLPTIQNTTFS-RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRS 129
++++ + +L+ L F N L +LYL +N+ S +
Sbjct: 94 IF-MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT 152
Query: 130 TELMVLDISNNRLSGHIPSWMGNFSTLQI--LSMSKNLLEGNIPVQFNNLASLQILNISE 187
+L VLD NN + M + L+++ N + G I + A Q LN
Sbjct: 153 EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGG 211
Query: 188 NNLSGSMISTL---NLSSVEHLYLQNNALGGSIPNTF--FRGSALETLDLRINE------ 236
+ L + S+ ++ P F ++E+++L+ +
Sbjct: 212 TQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271
Query: 237 -----HSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVE 291
S L+ L L +L +P L L L + +S N+ +N +
Sbjct: 272 NTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNF--PSLT 328
Query: 292 NGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGD 351
+ + G L L + N N L L + + N +N
Sbjct: 329 HLSIKGNTKRLE--LGTGCLENLENLRE-LDLSHD---DIETSDCCNLQLRN-------- 374
Query: 352 ILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPES-FSNLKMIESLDLS 410
L + L+LS NE + + L+L+ L +S F NL +++ L+LS
Sbjct: 375 -LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLS 433
Query: 411 HNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD 444
H+ L+ L +L ++ N+
Sbjct: 434 HSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ 467
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 157 bits (400), Expect = 8e-42
Identities = 78/459 (16%), Positives = 142/459 (30%), Gaps = 67/459 (14%)
Query: 8 HGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSN 67
L L + S + L + + N + L++LD +N
Sbjct: 105 KALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN 163
Query: 68 NFAGELSQSLVINCFSLEWLDLS-NNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGL 126
LS+ + + L L+ N N + I P + +L I GL
Sbjct: 164 AIH-YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGL 222
Query: 127 LRST--ELMVLDISNNRLSGHIPSWMGNFS--TLQILSMSKNLLEGNIPVQFNNLASLQI 182
ST L + + P+ +++ +++ K+ F+ + LQ
Sbjct: 223 KNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQE 282
Query: 183 LNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHS---- 238
L+++ +LS + LS+++ L L N + +L L ++ N
Sbjct: 283 LDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342
Query: 239 --------NLRTLLLRGNYLQ--GPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFS 288
NLR L L + ++ QL +L L +++S+N + F
Sbjct: 343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS-----LKTEAFK 397
Query: 289 RVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESY 348
L L L ++ A + +
Sbjct: 398 ECPQ---------LE----------------LLDLAFTRLKVKDAQSPFQNLHLLKV--- 429
Query: 349 KGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSI---PESFSNLKMIE 405
L+LS++ L L + LNL N S L +E
Sbjct: 430 ----------LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLE 479
Query: 406 SLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD 444
L LS L+ T L ++ D+S+N L+ +
Sbjct: 480 ILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 145 bits (367), Expect = 2e-37
Identities = 61/369 (16%), Positives = 112/369 (30%), Gaps = 31/369 (8%)
Query: 83 SLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRL 142
S E L+ S N + L L L L +D L L ++ N L
Sbjct: 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93
Query: 143 SGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLS 201
+ + L+ L + + + +N +L+ L + N++S +
Sbjct: 94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE 153
Query: 202 SVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHL 261
++ L QNNA+ L L +N GN + G I
Sbjct: 154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN-----------GNDIAG-IEPGAFDS 201
Query: 262 RKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVEL 321
++ + I + N + G D+ + S +
Sbjct: 202 AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFE--DMDDEDISPAVFEGLCEMSVESI 259
Query: 322 LLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIH 381
L + + + + LDL+ L+ ++PS + L +
Sbjct: 260 NLQKHYFFNISSNTFHC--------------FSGLQELDLTATHLS-ELPSGLVGLSTLK 304
Query: 382 GLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQ-LTELHSLSTFDVSYNNLSG 440
L LS N S SN + L + N ++ L L +L D+S++++
Sbjct: 305 KLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364
Query: 441 PIPDKEQFS 449
Q
Sbjct: 365 SDCCNLQLR 373
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 1e-35
Identities = 69/285 (24%), Positives = 112/285 (39%), Gaps = 19/285 (6%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
L LD++ S +LP + L L + +S N FE S L L + N
Sbjct: 280 LQELDLTATHLS-ELPSGLV-GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYM--NLTRLWALYLYNNNFSGKIKDGLL 127
EL + N +L LDLS+++ N NL+ L +L L N +
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397
Query: 128 RSTELMVLDISNNRLSGHIP-SWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNIS 186
+L +LD++ RL S N L++L++S +LL+ + F+ L +LQ LN+
Sbjct: 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ 457
Query: 187 ENNLSGSMISTL----NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRIN------- 235
N+ I L +E L L L + F + +DL N
Sbjct: 458 GNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517
Query: 236 ---EHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGS 277
H L L N++ +P L L + +++ N L+ +
Sbjct: 518 EALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 6e-33
Identities = 67/296 (22%), Positives = 116/296 (39%), Gaps = 22/296 (7%)
Query: 10 LHSLDISRNSFSGKLPQN-MGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNN 68
L P G+ + +N+ K+ F ++ GL+ LD+++ +
Sbjct: 230 LWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289
Query: 69 FAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLR 128
+ EL LV +L+ L LS N F + N L L + N ++ G L
Sbjct: 290 LS-ELPSGLV-GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347
Query: 129 S-TELMVLDISNNRL--SGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNI 185
+ L LD+S++ + S + N S LQ L++S N F L++L++
Sbjct: 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407
Query: 186 SENNLSGSMISTL--NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINE------- 236
+ L + NL ++ L L ++ L S F AL+ L+L+ N
Sbjct: 408 AFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ 467
Query: 237 -------HSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNM 285
L L+L L H L+ + +D+SHNRL S ++++
Sbjct: 468 KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL 523
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 1e-31
Identities = 85/449 (18%), Positives = 151/449 (33%), Gaps = 48/449 (10%)
Query: 12 SLDISRNSFSG---KLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNN 68
SL+++ N +G + F+G S+I + D+ +
Sbjct: 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242
Query: 69 FAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLR 128
+ + + L S+E ++L + F + + L L L + S ++ GL+
Sbjct: 243 ISPAVFEGLCEM--SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG 299
Query: 129 STELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQ-FNNLASLQILNISE 187
+ L L +S N+ NF +L LS+ N + NL +L+ L++S
Sbjct: 300 LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359
Query: 188 NNLSGSMISTL---NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINE-------- 236
+++ S L NLS ++ L L N F LE LDL
Sbjct: 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419
Query: 237 ----HSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVEN 292
L+ L L + L L L +++ N
Sbjct: 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK----------T 469
Query: 293 GYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDI 352
L + + L +S + L + V+ ++ NR S +
Sbjct: 470 NSLQTLGRLEILVLS----FCDLSSIDQHAFTS-----LKMMNHVD-LSHNRLTSSSIEA 519
Query: 353 LELMAG--LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLS 410
L + G L+L++N ++ +PS + L +NL N L + SN+ +E +
Sbjct: 520 LSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC----SNIYFLEWYKEN 575
Query: 411 HNKLNGQIPPQLTELHSLSTFDVSYNNLS 439
KL L +S LS
Sbjct: 576 MQKLEDTEDTLCENPPLLRGVRLSDVTLS 604
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 1e-13
Identities = 36/187 (19%), Positives = 71/187 (37%), Gaps = 10/187 (5%)
Query: 8 HGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQG---LRLLDV 64
H L L++S + + + LP L ++N+ N F +Q L +L +
Sbjct: 425 HLLKVLNLSHSLLDI-SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483
Query: 65 SSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKD 124
S + + + Q + + +DLS+N +L ++ L L +N+ S +
Sbjct: 484 SFCDLS-SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPS 541
Query: 125 GLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILN 184
L ++ +++ N L N L+ + LE N L+ +
Sbjct: 542 LLPILSQQRTINLRQNPLDCTC----SNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVR 597
Query: 185 ISENNLS 191
+S+ LS
Sbjct: 598 LSDVTLS 604
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 7e-12
Identities = 42/278 (15%), Positives = 69/278 (24%), Gaps = 60/278 (21%)
Query: 181 QILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNL 240
+ N L+ I +S E L N L TF R NL
Sbjct: 15 KTYNCENLGLNE--IPGTLPNSTECLEFSFNVLPTIQNTTFSR-------------LINL 59
Query: 241 RTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDI 300
L L + +L + ++ N L ++
Sbjct: 60 TFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP--------------- 104
Query: 301 VLRMYLDDAYVSNYYNSTVELLLDGN-----DGRMLGALVAVNF--MTKNRYESYKGDIL 353
+ L D L + + N S K
Sbjct: 105 ---------------KALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKG 149
Query: 354 ELMAGL---DLSNNELTGDIPSEIGDLQNIHG--LNLSHNFLSGSIPESFSNLKMIESLD 408
L D NN + ++ LQ LNL+ N ++ I + + +SL+
Sbjct: 150 FPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLN 208
Query: 409 LSHNKLNGQIPPQL--TELHSLSTFDVSYNNLSGPIPD 444
+ I L + + SL + P
Sbjct: 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA 246
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 2e-11
Identities = 16/121 (13%), Positives = 44/121 (36%), Gaps = 2/121 (1%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
L ++ + + + + L L N +S + ++ LD +N ++
Sbjct: 110 LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLS 169
Query: 419 PPQLTELHSLS--TFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGPAINKGCTNLPE 476
++ L + + +++ N+++G P + F ++ G L + +
Sbjct: 170 KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQS 229
Query: 477 L 477
L
Sbjct: 230 L 230
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 2e-11
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 359 LDLSNNELTGDIPSEIG---DLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN 415
L+L N + L + L LS LS +F++LKM+ +DLSHN+L
Sbjct: 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513
Query: 416 GQIPPQLTELHSLSTFDVSYNNLSGPIPD 444
L+ L + +++ N++S +P
Sbjct: 514 SSSIEALSHLKGI-YLNLASNHISIILPS 541
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 4e-40
Identities = 78/468 (16%), Positives = 158/468 (33%), Gaps = 43/468 (9%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
L +L ++ N L L + + IG++ L+ L+V+ N
Sbjct: 82 LSNLILTGNPIQS-FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFI 140
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLY---NNNFSGKIKDGL 126
+ N +L +DLS N + L + L + N I+D
Sbjct: 141 HSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQA 200
Query: 127 LRSTELMVLDISNNRLSGHIPSW-MGNFSTLQILSMSKNLLEGNIPVQF---NNLASLQI 182
+ +L L + N S +I + N + L + + + ++ + + L
Sbjct: 201 FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260
Query: 183 LNISENNLSGSMISTL------NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINE 236
+ I E L+ + + L++V + L ++ + ++L + +
Sbjct: 261 VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQ 318
Query: 237 H--------SNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFS 288
L++L L N +G I + L L +D+S N L+ S +++ +
Sbjct: 319 LKQFPTLDLPFLKSLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTN 376
Query: 289 RVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTK------ 342
+ + L ++ L + + + A + K
Sbjct: 377 SLRHLDLSFNGAIIMSA-----NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI 431
Query: 343 --NRYESYKGDILELMAG---LDLSNNELTGDIPSEI-GDLQNIHGLNLSHNFLSGSIPE 396
+ I + L ++ N + S + + N+ L+LS L
Sbjct: 432 SYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG 491
Query: 397 SFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD 444
F L ++ L++SHN L +L+SLST D S+N +
Sbjct: 492 VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI 539
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 2e-39
Identities = 81/462 (17%), Positives = 142/462 (30%), Gaps = 55/462 (11%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
L LD+SR + L L + ++ N + P S + L L
Sbjct: 58 LQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYM-NLTRLWALYLYNNNFSGKIKDGLLR 128
A L + +L+ L++++N P Y NLT L + L N I L+
Sbjct: 117 A-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQ 174
Query: 129 -----STELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIP-VQFNNLASLQI 182
+ LD+S N + I L L++ N NI NLA L +
Sbjct: 175 FLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHV 233
Query: 183 LNISENNLSG---------SMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLR 233
+ S++ L +++ L F + + + L
Sbjct: 234 HRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA 293
Query: 234 IN---------EHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITN 284
+H ++L + L+ L L+ L ++ N+ + S
Sbjct: 294 GVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSL---TLTMNKGSISFK----K 346
Query: 285 MLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNR 344
+ + YL L +Y NS L L N ++ A
Sbjct: 347 VALPSLS--YLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFM-------- 396
Query: 345 YESYKGDILELMAGLDLSNNELTGDIP-SEIGDLQNIHGLNLSHNFLSGSIPESFSNLKM 403
LE + LD ++ L S L+ + L++S+ F L
Sbjct: 397 -------GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS 449
Query: 404 IESLDLSHNKLNGQIPPQ-LTELHSLSTFDVSYNNLSGPIPD 444
+ +L ++ N +L+ D+S L
Sbjct: 450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG 491
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 147 bits (374), Expect = 3e-38
Identities = 80/455 (17%), Positives = 147/455 (32%), Gaps = 76/455 (16%)
Query: 10 LHSLDISRNSFSGKLP---QNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSS 66
L +D+S N Q + + +++S N + I + L L +
Sbjct: 155 LVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRG 213
Query: 67 NNFAGELSQSLVINCFSLEWLDLSNNNFVG---------QIFPNYMNLTRLWALYLYNNN 117
N + + ++ + N L L F I ++T L N
Sbjct: 214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE-FRLTYTN 272
Query: 118 FSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNL 177
+ + ++ + ++ +F Q LS+ + L+ +L
Sbjct: 273 DFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKHFK-WQSLSIIRCQLKQ---FPTLDL 327
Query: 178 ASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTF--FRGSALETLDLRIN 235
L+ L ++ N S S + L S+ +L L NAL S ++ ++L LDL N
Sbjct: 328 PFLKSLTLTMNKGSIS-FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386
Query: 236 EHS----------NLRTLLLRGNYLQGPIPHQ-LCHLRKLGIMDISHNRLNGSIPACITN 284
L+ L + + L+ L KL +DIS+ +
Sbjct: 387 GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI-----DFD 441
Query: 285 MLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNR 344
+F + + L L + GN + T
Sbjct: 442 GIFLGLTS---------LN----------------TLKMAGNSFKDNTLSNVFANTTN-- 474
Query: 345 YESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMI 404
L LDLS +L L + LN+SHN L ++ L +
Sbjct: 475 --------LTF---LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL 523
Query: 405 ESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLS 439
+LD S N++ SL+ F+++ N+++
Sbjct: 524 STLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 4e-37
Identities = 74/454 (16%), Positives = 134/454 (29%), Gaps = 40/454 (8%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
++D+S N L +L ++++S+ E + + L L ++ N
Sbjct: 34 TKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRS 129
S SLE L L L L + +N +
Sbjct: 93 QS-FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151
Query: 130 -TELMVLDISNNRLSGHIPSWMGNFS----TLQILSMSKNLLEGNIPVQFNNLASLQILN 184
T L+ +D+S N + + + L MS N ++ F + L L
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELT 210
Query: 185 ISENNLSGSMISTL--NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRT 242
+ N S +++ T NL+ + L F S +E L +
Sbjct: 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL-----CDVTIDE 265
Query: 243 LLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNML----FSRVENGYLYGF 298
L + L + M ++ + R +
Sbjct: 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTL 325
Query: 299 DI----VLRMY---LDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGD 351
D+ L + ++ S L L N G + T +
Sbjct: 326 DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS-------- 377
Query: 352 ILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPES-FSNLKMIESLDLS 410
L LDLS N + + L+ + L+ H+ L S F +L+ + LD+S
Sbjct: 378 -LRH---LDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432
Query: 411 HNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD 444
+ L SL+T ++ N+
Sbjct: 433 YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS 466
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 1e-35
Identities = 70/387 (18%), Positives = 128/387 (33%), Gaps = 29/387 (7%)
Query: 83 SLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRL 142
S + +DLS N ++ N + L L L L L ++ N +
Sbjct: 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92
Query: 143 SGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL--NL 200
P ++L+ L + L L +L+ LN++ N + + NL
Sbjct: 93 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL 152
Query: 201 SSVEHLYLQNNALGGSIPNTF----FRGSALETLDLRIN----------EHSNLRTLLLR 246
+++ H+ L N + N +LD+ +N + L L LR
Sbjct: 153 TNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLR 212
Query: 247 GNYLQGPIPHQLCH-LRKLGIMDISHNRLNGSIP-ACITNMLFSRVENGYLYGFDI-VLR 303
GN+ I L L + + + + + + F +
Sbjct: 213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN 272
Query: 304 MYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTK-----NRYESYKGDILELMAG 358
+ DD + + + L G + L + + + + L +
Sbjct: 273 DFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKS 332
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKM--IESLDLSHNKLNG 416
L L+ N+ + I + L ++ L+LS N LS S S+S+L + LDLS N
Sbjct: 333 LTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII 390
Query: 417 QIPPQLTELHSLSTFDVSYNNLSGPIP 443
+ L L D ++ L
Sbjct: 391 -MSANFMGLEELQHLDFQHSTLKRVTE 416
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 4e-29
Identities = 56/272 (20%), Positives = 96/272 (35%), Gaps = 24/272 (8%)
Query: 8 HGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSN 67
SL I R + LP L + ++ N G+I + L LD+S N
Sbjct: 307 FKWQSLSIIRCQLKQFPTLD----LPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRN 360
Query: 68 NFAGELSQSLVI-NCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGL 126
+ S SL LDLS N + + N+M L L L ++ +
Sbjct: 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSA 419
Query: 127 LRS-TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQ-FNNLASLQILN 184
S +L+ LDIS ++L L M+ N + N F N +L L+
Sbjct: 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLD 479
Query: 185 ISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTL 243
+S+ L L ++ L + +N L + + N+ +L TL
Sbjct: 480 LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY-------------NQLYSLSTL 526
Query: 244 LLRGNYLQGPIPHQLCHLRKLGIMDISHNRLN 275
N ++ + L ++++N +
Sbjct: 527 DCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 1e-22
Identities = 52/352 (14%), Positives = 106/352 (30%), Gaps = 72/352 (20%)
Query: 111 LYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNI 170
+ S K+ D + ST+ +D+S N L NFS LQ L +S+ +E
Sbjct: 16 YQCMDQKLS-KVPDDIPSSTK--NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72
Query: 171 PVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALET 229
++ L L L ++ N + + L+S+E+L L
Sbjct: 73 DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPI-------- 124
Query: 230 LDLRINEHSNLRTLLLRGNYLQG-PIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFS 288
+ L+ L + N++ +P +L L +D+S+N + + + +
Sbjct: 125 -----GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN 179
Query: 289 RVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESY 348
N L M+ N +
Sbjct: 180 PQVNLSLD-------------------------------------------MSLNPIDFI 196
Query: 349 KGDILELMA--GLDLSNNELTGDIPSE-IGDLQNIHGLNLSHNFLSGSIPESFSNLKMIE 405
+ + + L L N + +I + +L +H L ++E
Sbjct: 197 QDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME 256
Query: 406 SL--------DLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFS 449
L L++ + L ++S ++ ++ + F
Sbjct: 257 GLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFK 308
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 9e-33
Identities = 107/614 (17%), Positives = 189/614 (30%), Gaps = 109/614 (17%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
L L++ + + LP L +++ + P + + L L +
Sbjct: 50 LQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGL 109
Query: 70 AGE-LSQSLVINCFSLEWLDLSNNNFVG-QIFPNYMNLTRLWALYLYNNNFSGKIKDGL- 126
+ L N +L LDLS N + P++ L L ++ +N + L
Sbjct: 110 SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELE 169
Query: 127 -LRSTELMVLDISNNRLSGHIPSWMGNFS------TLQILSMSKNLLEGNIPVQFNNLAS 179
L+ L ++ N L + G L+IL +S N +I F+N S
Sbjct: 170 PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAIS 229
Query: 180 ------------LQILNISENNLSG---SMISTLNLSSVEHLYLQNNALGGSIPNTFFRG 224
+ +N+ + + L SSV HL L + + F
Sbjct: 230 KSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL 289
Query: 225 SALETLDLRINE-----------HSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNR 273
L+ L+L N+ NL+ L L N L L K+ +D+ N
Sbjct: 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH 349
Query: 274 LNGSIPACITNML-------FSRVENGYLYGFDIVLRMYLDD---AYVSNYYNSTVELLL 323
+ I L ++ + ++L + + + L
Sbjct: 350 IA-IIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHL 408
Query: 324 DGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEI-GDLQNIHG 382
N L L + + + L L+ N + + + ++
Sbjct: 409 SENRLENLDILYFLLRVPHLQI-------------LILNQNRFSSCSGDQTPSENPSLEQ 455
Query: 383 LNLSHNFLSGSI-----PESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNN 437
L L N L + + F L ++ L L+HN LN P + L +L ++ N
Sbjct: 456 LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR 515
Query: 438 LSG--------------------PIPDKEQFSTFDESSYRGNLFLC-------------- 463
L+ P+ + F + N F+C
Sbjct: 516 LTVLSHNDLPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECELSTFINWLNHT 575
Query: 464 -----GPAINKGCTNLPEL----LEPSSKGAEDESEVDLVAFYWSFVASCVTVMLGLLAI 514
GP + C L S DE EV + F+ VT+ L L+ I
Sbjct: 576 NVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTI 635
Query: 515 LWVNPYWRRLWFYF 528
L V + + +
Sbjct: 636 LTVTKFRGFCFICY 649
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 124 bits (312), Expect = 6e-30
Identities = 61/362 (16%), Positives = 123/362 (33%), Gaps = 28/362 (7%)
Query: 87 LDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHI 146
N Q+ L L L N +L +L++ + I
Sbjct: 9 AFYRFCNLT-QVPQV---LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64
Query: 147 PSWM-GNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL---NLSS 202
N L+IL + + + P F L L L + LS +++ NL +
Sbjct: 65 DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124
Query: 203 VEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLR 262
+ L L N + + F ++L+++ N + H+L L+
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGK------------LNSLKSIDFSSNQIFLVCEHELEPLQ 172
Query: 263 --KLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDI---VLRMYLDDAYVSNYYNS 317
L ++ N L + + N L D+ + + + + S
Sbjct: 173 GKTLSFFSLAANSLYSRVSVDWGK-CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKS 231
Query: 318 TVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDL 377
L+ + G + + ++ G + LDLS+ + L
Sbjct: 232 QAFSLILAHHIMGAG--FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL 289
Query: 378 QNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNN 437
+++ LNL++N ++ E+F L ++ L+LS+N L L ++ D+ N+
Sbjct: 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH 349
Query: 438 LS 439
++
Sbjct: 350 IA 351
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 1e-29
Identities = 68/367 (18%), Positives = 131/367 (35%), Gaps = 26/367 (7%)
Query: 83 SLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRS-TELMVLDISNNR 141
+ E L LS N ++ L +L L L + I R+ L +LD+ +++
Sbjct: 25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84
Query: 142 LSGHIPSWMGNFSTLQILSMSKNLLEGNI--PVQFNNLASLQILNISENNLSGSMISTL- 198
+ P L L + L + F NL +L L++S+N + +
Sbjct: 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSF 144
Query: 199 -NLSSVEHLYLQNNALGGSIPNTF--FRGSALETLDLRINEHSNLRTLLLRGNYLQGPIP 255
L+S++ + +N + + +G L L +N + ++ + P
Sbjct: 145 GKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL----AANSLYSRVSVDWGKCMNP 200
Query: 256 HQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYY 315
+ L L D+S N I +N S+ + L ++ + +
Sbjct: 201 FRNMVLEIL---DVSGNGWTVDITGNFSN-AISKSQAFSLILAHHIMGAGFGFHNIKDPD 256
Query: 316 NSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAG---LDLSNNELTGDIPS 372
+T L + + ++ ++ S + E + L+L+ N++
Sbjct: 257 QNTFAGLARSS-------VRHLD-LSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADE 308
Query: 373 EIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFD 432
L N+ LNLS+N L +F L + +DL N + L L T D
Sbjct: 309 AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLD 368
Query: 433 VSYNNLS 439
+ N L+
Sbjct: 369 LRDNALT 375
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 4e-27
Identities = 79/443 (17%), Positives = 144/443 (32%), Gaps = 66/443 (14%)
Query: 11 HSLDISRNSFSG--KLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNN 68
I+ F ++PQ L + +S N SS ++ L+LL++ S
Sbjct: 4 FDGRIAFYRFCNLTQVPQV----LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY 59
Query: 69 FAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLR 128
+ + N +L LDL ++ +L+ + F G
Sbjct: 60 TPLTIDKEAFRNLPNLRILDLGSSKI----------------YFLHPDAFQG-------- 95
Query: 129 STELMVLDISNNRLSGHI--PSWMGNFSTLQILSMSKNLLEG-NIPVQFNNLASLQILNI 185
L L + LS + + N L L +SKN + + F L SL+ ++
Sbjct: 96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF 155
Query: 186 SENNLSG---SMISTLNLSSVEHLYLQNNALGGSIPNTF------FRGSALETLDLRINE 236
S N + + L ++ L N+L + + FR LE LD+ N
Sbjct: 156 SSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG 215
Query: 237 HSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLY 296
+ T N + L + + + + S V + L
Sbjct: 216 WTVDITGNFS-NAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLS 274
Query: 297 GFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELM 356
+ ++ V L L N + + F + +
Sbjct: 275 HGFVF----SLNSRVFETLKDLKVLNLAYNK---INKIADEAFYGLDNLQV--------- 318
Query: 357 AGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG 416
L+LS N L S L + ++L N ++ ++F L+ +++LDL N L
Sbjct: 319 --LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT- 375
Query: 417 QIPPQLTELHSLSTFDVSYNNLS 439
+ + S+ +S N L
Sbjct: 376 ----TIHFIPSIPDIFLSGNKLV 394
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 2e-09
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 3/93 (3%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSI-PESFSNLKMIESLDLSHNKLNGQ 417
L LS N + S L+ + L L + +I E+F NL + LDL +K+
Sbjct: 29 LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-F 87
Query: 418 IPPQ-LTELHSLSTFDVSYNNLSGPIPDKEQFS 449
+ P L L + + LS + F
Sbjct: 88 LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 3e-31
Identities = 83/442 (18%), Positives = 155/442 (35%), Gaps = 37/442 (8%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
+ SLD+S N + + L + + + + + L LD+S N+
Sbjct: 28 MKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFVGQIFPNY-MNLTRLWALYLYNNNFSGKIKDGLLR 128
+ LS S SL++L+L N + + NLT L L + N +I+
Sbjct: 87 S-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145
Query: 129 S-TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISE 187
T L L+I L + + + + L++ + + + + L+S++ L + +
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205
Query: 188 NNLSGSMISTLNLSSV-EHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLR 246
NL+ S L + V + +F L L ++E L
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265
Query: 247 GNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYL 306
+ L K+ + I + + ++S +E V R+ +
Sbjct: 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK--------VKRITV 317
Query: 307 DDAYVSNYYNST-------VELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGL 359
+++ V S L L N + N K + S L+ L
Sbjct: 318 ENSKVFLVPCSFSQHLKSLEFLDLSENL---MVEEYLKNSACKGAWPS-----LQT---L 366
Query: 360 DLSNNELT--GDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 417
LS N L + L+N+ L++S N +P+S + + L+LS +
Sbjct: 367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-V 424
Query: 418 IPPQLTELHSLSTFDVSYNNLS 439
+ + +L DVS NNL
Sbjct: 425 VKTCI--PQTLEVLDVSNNNLD 444
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 1e-29
Identities = 73/443 (16%), Positives = 143/443 (32%), Gaps = 37/443 (8%)
Query: 9 GLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNN 68
D SF+ +P + + +++S N + L++L + S+
Sbjct: 6 ASGVCDGRSRSFT-SIPSG---LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61
Query: 69 FAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYM--NLTRLWALYLYNNNFSGKIKDGL 126
+ + SLE LDLS+N+ + L+ L L L N + L
Sbjct: 62 IN-TIEGDAFYSLGSLEHLDLSDNHL--SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118
Query: 127 LRS-TELMVLDISNNRLSGHIPSWM-GNFSTLQILSMSKNLLEGNIPVQFNNLASLQILN 184
+ T L L I N I ++L L + L ++ + L
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178
Query: 185 ISENNLSGSMISTLN-LSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTL 243
+ + + + + LSSV +L L++ L + + S L
Sbjct: 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238
Query: 244 LLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNML-FSRVENGYLYGFDI-V 301
+ + L ++ D + N L P+ + +VE + I
Sbjct: 239 SFNELLK---LLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQ 295
Query: 302 LRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDL 361
++ D + V + + ++ + ++ + + LDL
Sbjct: 296 FYLFYDLSTVYSLLEKVKRITVENSKVFLVPCS-FSQHLKSLEF-------------LDL 341
Query: 362 SNNELTGDI---PSEIGDLQNIHGLNLSHNFLS--GSIPESFSNLKMIESLDLSHNKLNG 416
S N + + + G ++ L LS N L E LK + SLD+S N +
Sbjct: 342 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH- 400
Query: 417 QIPPQLTELHSLSTFDVSYNNLS 439
+P + ++S +
Sbjct: 401 PMPDSCQWPEKMRFLNLSSTGIR 423
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 6e-29
Identities = 63/379 (16%), Positives = 134/379 (35%), Gaps = 24/379 (6%)
Query: 79 INCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDIS 138
++C + D + +F I + +L L N + L L VL +
Sbjct: 2 LSCDASGVCDGRSRSFT-SIPSG--LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILK 58
Query: 139 NNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL 198
++R++ + +L+ L +S N L F L+SL+ LN+ N +++L
Sbjct: 59 SSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118
Query: 199 --NLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRIN-----------EHSNLRTLL 244
NL++++ L + N I F G ++L L+++ ++ L
Sbjct: 119 FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178
Query: 245 LRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACIT-NMLFSRVENGYLYGFDIVLR 303
L + + L + +++ L + + + + S ++ G +
Sbjct: 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238
Query: 304 MYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSN 363
+ + + Y E+ D LG + + + L +
Sbjct: 239 SFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIR---RLHIPQ 295
Query: 364 NELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQ-- 421
L D+ + L+ + + + ++ + +LK +E LDLS N + +
Sbjct: 296 FYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSA 355
Query: 422 -LTELHSLSTFDVSYNNLS 439
SL T +S N+L
Sbjct: 356 CKGAWPSLQTLVLSQNHLR 374
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 7e-29
Identities = 83/443 (18%), Positives = 154/443 (34%), Gaps = 43/443 (9%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
L L + + + + + L L ++++S N S G + L+ L++ N +
Sbjct: 52 LQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY 110
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFVGQIFPNY-MNLTRLWALYLYNNNFSGKIKDGLLR 128
SL N +L+ L + N +I LT L L + + + L+
Sbjct: 111 QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLK 169
Query: 129 S-TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFN-----------N 176
S ++ L + + + + + S+++ L + L
Sbjct: 170 SIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA 229
Query: 177 LASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINE 236
+ + S N L + L LS VE N LG P+ S L ++
Sbjct: 230 FRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVET---- 285
Query: 237 HSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLY 296
+R L + YL + L K+ + + ++++ +P + L +E L
Sbjct: 286 -VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHL-KSLEFLDLS 342
Query: 297 GFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELM 356
+V YL ++ + S L+L N L ++ + L+ +
Sbjct: 343 ENLMV-EEYLKNSACKGAWPSLQTLVLSQNH---LRSMQKTGEILLT---------LKNL 389
Query: 357 AGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG 416
LD+S N +P + + LNLS + L E LD+S+N L+
Sbjct: 390 TSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTL---EVLDVSNNNLD- 444
Query: 417 QIPPQLTELHSLSTFDVSYNNLS 439
L L L +S N L
Sbjct: 445 SFSLFLPRLQEL---YISRNKLK 464
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 9e-20
Identities = 52/269 (19%), Positives = 100/269 (37%), Gaps = 28/269 (10%)
Query: 12 SLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAG 71
L S S + + + + ++I + ++ + ++ ++ + V ++
Sbjct: 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV-F 323
Query: 72 ELSQSLVINCFSLEWLDLSNNNFVGQIFPNYM---NLTRLWALYLYNNNFS--GKIKDGL 126
+ S + SLE+LDLS N V + N L L L N+ K + L
Sbjct: 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 383
Query: 127 LRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNIS 186
L L LDIS N +P ++ L++S + V+ +L++L++S
Sbjct: 384 LTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV---VKTCIPQTLEVLDVS 439
Query: 187 ENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLR 246
NNL +L L ++ LY+ N L ++P+ L + +
Sbjct: 440 NNNLDSF---SLFLPRLQELYISRNKLK-TLPDASL--------------FPVLLVMKIS 481
Query: 247 GNYLQGPIPHQLCHLRKLGIMDISHNRLN 275
N L+ L L + + N +
Sbjct: 482 RNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 83.2 bits (206), Expect = 5e-17
Identities = 47/287 (16%), Positives = 89/287 (31%), Gaps = 20/287 (6%)
Query: 2 QLTSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRL 61
L Q +D + + + + L
Sbjct: 207 NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL 266
Query: 62 LDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGK 121
D + + +S+ + ++ L + + Y L ++ + + N+
Sbjct: 267 GDFNPSESDV-VSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-L 324
Query: 122 IKDGLLRS-TELMVLDISNNRLS---GHIPSWMGNFSTLQILSMSKNLLE--GNIPVQFN 175
+ + L LD+S N + + G + +LQ L +S+N L
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384
Query: 176 NLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRIN 235
L +L L+IS N S + L L + + + + LE LD+ N
Sbjct: 385 TLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGI-RVVKTCIPQT--LEVLDVSNN 441
Query: 236 -------EHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLN 275
L+ L + N L+ +P L +M IS N+L
Sbjct: 442 NLDSFSLFLPRLQELYISRNKLKT-LPDAS-LFPVLLVMKISRNQLK 486
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 4e-15
Identities = 38/203 (18%), Positives = 79/203 (38%), Gaps = 27/203 (13%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNI---PSSIGKMQGLRLLDVSS 66
+ + + + +P + L L ++++S+N + G L+ L +S
Sbjct: 312 VKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQ 370
Query: 67 NNFAG-ELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDG 125
N+ + + +++ +L LD+S N F + + ++ L L + +K
Sbjct: 371 NHLRSMQKTGEILLTLKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIR-VVKTC 428
Query: 126 LLRSTE------------------LMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLE 167
+ ++ E L L IS N+L +P F L ++ +S+N L+
Sbjct: 429 IPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLK 486
Query: 168 GNIPVQFNNLASLQILNISENNL 190
F+ L SLQ + + N
Sbjct: 487 SVPDGIFDRLTSLQKIWLHTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 40/263 (15%), Positives = 87/263 (33%), Gaps = 59/263 (22%)
Query: 179 SLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHS 238
+ + + + + I + ++++ L L N + I + R +
Sbjct: 6 ASGVCDGRSRSFTS--IPSGLTAAMKSLDLSFNKIT-YIGHGDLRA------------CA 50
Query: 239 NLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGF 298
NL+ L+L+ + + L L +D+S N L+ +++ F + +
Sbjct: 51 NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS-----LSSSWFGPLSS------ 99
Query: 299 DIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAG 358
L+ L L GN + LG +T +
Sbjct: 100 ---LK----------------YLNLMGNPYQTLGVTSLFPNLTNLQT------------- 127
Query: 359 LDLSNNELTGDIPSE-IGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 417
L + N E +I L +++ L + L +S +++ I L L ++
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187
Query: 418 IPPQLTELHSLSTFDVSYNNLSG 440
+ L S+ ++ NL+
Sbjct: 188 LEIFADILSSVRYLELRDTNLAR 210
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 1/87 (1%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG-Q 417
L L ++ + L ++ L+LS N LS F L ++ L+L N
Sbjct: 55 LILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG 114
Query: 418 IPPQLTELHSLSTFDVSYNNLSGPIPD 444
+ L +L T + I
Sbjct: 115 VTSLFPNLTNLQTLRIGNVETFSEIRR 141
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 8e-31
Identities = 69/394 (17%), Positives = 127/394 (32%), Gaps = 31/394 (7%)
Query: 83 SLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRL 142
S + LDLS N ++ + L L L + L L ++ N +
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 143 SGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL--NL 200
S+LQ L + L +L +L+ LN++ N + + NL
Sbjct: 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148
Query: 201 SSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSN--------------LRTLLLR 246
+++EHL L +N + + L+L ++ N L L LR
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR 208
Query: 247 GNYLQGPIPHQLCH-LRKLGIMDISHNRLNGSIP-ACITNMLFSRVENGYLYGFDIVL-- 302
N+ + L L + + + N + F +
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268
Query: 303 RMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTK-----NRYESYKGDILELMA 357
D + N + L + ++ + L+ +
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLK 328
Query: 358 GLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLS--GSIPESFSNLKMIESLDLSHNKLN 415
L ++N+ + SE+ L ++ L+LS N LS G +S ++ LDLS N +
Sbjct: 329 RLTFTSNKGG-NAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386
Query: 416 GQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFS 449
+ L L D ++NL + + F
Sbjct: 387 -TMSSNFLGLEQLEHLDFQHSNLKQ-MSEFSVFL 418
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 1e-29
Identities = 82/427 (19%), Positives = 149/427 (34%), Gaps = 30/427 (7%)
Query: 33 PKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNN 92
+++S N S L++LD+S + + L L L+ N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86
Query: 93 NFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRL-SGHIPSWMG 151
+ L+ L L N + + L L++++N + S +P +
Sbjct: 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146
Query: 152 NFSTLQILSMSKNLLEGNIPVQFNNLASLQI----LNISENNLSGSMISTLNLSSVEHLY 207
N + L+ L +S N ++ L + + L++S N ++ + L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 206
Query: 208 LQNNALGGSIPNTFFRG-SALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGI 266
L+NN ++ T +G + LE L + E N L+ L L L I
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE-------GNLEKFDKSALEGLCNLTI 259
Query: 267 MDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGN 326
+ L+ + I LF+ + N + V + D Y L L
Sbjct: 260 EEFRLAYLDYYLDDIID--LFNCLTNVSSFSLVSVTIERVKDFS---YNFGWQHLELVNC 314
Query: 327 DGRMLGALVAVNF----MTKNR-YESYKGDILELMAGLDLSNNELT--GDIPSEIGDLQN 379
L + T N+ ++ L + LDLS N L+ G +
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374
Query: 380 IHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQ--LTELHSLSTFDVSYNN 437
+ L+LS N + ++ +F L+ +E LD H+ L Q+ L +L D+S+ +
Sbjct: 375 LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTH 432
Query: 438 LSGPIPD 444
Sbjct: 433 TRVAFNG 439
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 4e-28
Identities = 82/460 (17%), Positives = 151/460 (32%), Gaps = 60/460 (13%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
L LD+SR + L L + ++ N + + + L+ L N
Sbjct: 54 LQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYM-NLTRLWALYLYNNNFSGKIKDGLLR 128
A L + + +L+ L++++N P Y NLT L L L +N L
Sbjct: 113 A-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171
Query: 129 STEL----MVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIP-VQFNNLASLQIL 183
++ + LD+S N ++ I L L++ N N+ LA L++
Sbjct: 172 LHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH 230
Query: 184 NISENN---------LSGSMISTLNLSSVEHLYLQ-NNALGGSIPNTFFRGSALETLDLR 233
+ S + L ++E L + I + F + + + L
Sbjct: 231 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290
Query: 234 INE---------HSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITN 284
+ + L L +L L++L + N+
Sbjct: 291 SVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL---TFTSNKGGN-------- 339
Query: 285 MLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNR 344
FS V+ L D+ N +L ++ ++ N
Sbjct: 340 -AFSEVDLPSLEFLDL-------------SRNGLSFKGCCSQSDFGTTSLKYLD-LSFNG 384
Query: 345 YESYKGDILELMA--GLDLSNNELTGDIPSEI--GDLQNIHGLNLSHNFLSGSIPESFSN 400
+ + L L LD ++ L + L+N+ L++SH + F+
Sbjct: 385 VITMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443
Query: 401 LKMIESLDLSHNKLNGQIPPQ-LTELHSLSTFDVSYNNLS 439
L +E L ++ N P TEL +L+ D+S L
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 1e-25
Identities = 82/470 (17%), Positives = 154/470 (32%), Gaps = 80/470 (17%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVS---S 66
L L+++ N L L ++++S N + + + + + LL++S S
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185
Query: 67 NNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYM-NLTRLWALYLY------NNNFS 119
N + Q L L L NN + + L L L N
Sbjct: 186 LNPMNFI-QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244
Query: 120 GKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQIL---SMSKNLLEGNIPVQFN- 175
K L L + + L ++ + F+ L + S+ +E +N
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF 304
Query: 176 NLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRIN 235
L+++N TL L S++ L +N G + + +LE LDL N
Sbjct: 305 GWQHLELVNCKFGQFP-----TLKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRN 357
Query: 236 EHS-------------NLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACI 282
S +L+ L L N + + L +L +D H+ L
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQ------ 410
Query: 283 TNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTK 342
+ + V + + L + R+ + +
Sbjct: 411 -----------------------MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS- 446
Query: 343 NRYESYKGDILELMAGLDLSNNELTGDIPSEI-GDLQNIHGLNLSHNFLSGSIPESFSNL 401
LE+ L ++ N + +I +L+N+ L+LS L P +F++L
Sbjct: 447 ----------LEV---LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493
Query: 402 KMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTF 451
++ L+++ N+L L SL + N P + S +
Sbjct: 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 543
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 3e-24
Identities = 55/277 (19%), Positives = 93/277 (33%), Gaps = 28/277 (10%)
Query: 8 HGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSN 67
+ S + + + L +N F S L+ L +SN
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS------LKRLTFTSN 335
Query: 68 NFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNY--MNLTRLWALYLYNNNFSGKIKDG 125
S+ ++ SLE+LDLS N + + T L L L N +
Sbjct: 336 KGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN 391
Query: 126 LLRSTELMVLDISNNRLSGHIP-SWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILN 184
L +L LD ++ L S + L L +S FN L+SL++L
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451
Query: 185 ISENNLSGSMISTL--NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRT 242
++ N+ + + + L ++ L L L + T F S+L+
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNS------------LSSLQV 498
Query: 243 LLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIP 279
L + N L+ L L + + N + S P
Sbjct: 499 LNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 4e-30
Identities = 70/448 (15%), Positives = 136/448 (30%), Gaps = 60/448 (13%)
Query: 32 LPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSN 91
+ ++ +S + + S ++ LD+S N + ++S + + LE L+LS+
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67
Query: 92 NNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMG 151
N + +L+ L L L NN LL + L +NN +S +
Sbjct: 68 NVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSC--S 117
Query: 152 NFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL--NLSSVEHLYLQ 209
+ + ++ N + + + +Q L++ N + + L + ++EHL LQ
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177
Query: 210 NNALGGSIPNTFFRGSALETLDLRINE----------HSNLRTLLLRGNYLQGPIPHQLC 259
N + + L+TLDL N+ + + + LR N L I L
Sbjct: 178 YNFI-YDVKGQVVFAK-LKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALR 234
Query: 260 HLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTV 319
+ L D+ N + C T F + V
Sbjct: 235 FSQNLEHFDLRGNGFH-----CGTLRDFFSKNQRVQ---------TVAKQTVKK------ 274
Query: 320 ELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELT-------GDIPS 372
L G + + E + + L + L +
Sbjct: 275 ---LTGQNEEECTVPTLGH-YGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLEC 330
Query: 373 EIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP---PQLTELHSLS 429
E + ++ I + + +L+ L+ Q+ EL
Sbjct: 331 ERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTL 390
Query: 430 TFDVSYNNLSGPIPDKEQFSTFDESSYR 457
V L ++ R
Sbjct: 391 QQAVGQIELQHATEEQSPLQLLRAIVKR 418
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 2e-26
Identities = 54/349 (15%), Positives = 103/349 (29%), Gaps = 62/349 (17%)
Query: 122 IKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQ 181
I + + ++++ L + S + ++ L +S N L L+
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 182 ILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINE----- 236
+LN+S N L + +LS++ L L NN + G ++ETL N
Sbjct: 62 LLNLSSNVLY-ETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRVS 115
Query: 237 ---HSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENG 293
+ + L N + ++ +D+ N + V
Sbjct: 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI-------------DTVNFA 162
Query: 294 YLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDIL 353
L L L L N + + K +
Sbjct: 163 ELAASSDTLE----------------HLNLQYNF---IYDVKGQVVFAKLKT-------- 195
Query: 354 ELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNK 413
LDLS+N+L + E + ++L +N L I ++ + +E DL N
Sbjct: 196 -----LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG 248
Query: 414 LNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFL 462
+ + V+ + E+ T + G
Sbjct: 249 FHCGTLRDFF-SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCC 296
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 73.7 bits (181), Expect = 4e-14
Identities = 38/245 (15%), Positives = 73/245 (29%), Gaps = 13/245 (5%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
+ LD+ N + L ++N+ N ++ + L+ LD+SSN
Sbjct: 146 VQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKL 203
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFS-GKIKDGLLR 128
A + + + W+ L NN V I L L N F G ++D +
Sbjct: 204 A-FMGPEFQ-SAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260
Query: 129 STELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISEN 188
+ + + + + + E + L +L+ +
Sbjct: 261 NQRVQTVAKQTVKKLTGQNE--EECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALL 318
Query: 189 NLSGSMISTL-----NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTL 243
+ GS L N + + I R A TL+ + +
Sbjct: 319 SGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSN 378
Query: 244 LLRGN 248
R +
Sbjct: 379 GRRAH 383
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 6e-12
Identities = 41/238 (17%), Positives = 79/238 (33%), Gaps = 48/238 (20%)
Query: 216 SIPNTFFRGSALETLDLRINE-----------HSNLRTLLLRGNYLQGPIPHQLCHLRKL 264
+I G+ + + + N++ L L GN L L KL
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 265 GIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLD 324
++++S N L ++ + LR L L+
Sbjct: 61 ELLNLSSNVLYETLD-------LESLST---------LR----------------TLDLN 88
Query: 325 GNDGRMLGALVAVNF--MTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHG 382
N + L ++ N + + L+NN++T + G +
Sbjct: 89 NNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQY 148
Query: 383 LNLSHNFLSG-SIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLS 439
L+L N + + E ++ +E L+L +N + + Q+ L T D+S N L+
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA 204
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 63.3 bits (154), Expect = 9e-11
Identities = 30/234 (12%), Positives = 66/234 (28%), Gaps = 7/234 (2%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
L +LD+S N + + + ++++ N I ++ Q L D+ N F
Sbjct: 193 LKTLDLSSNKLA-FMGPEFQS-AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFV-GQIFPNYMNLTRLWALYLYNNNFSGKIKDGL-- 126
+ ++ + + GQ T + D L
Sbjct: 250 HCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIA 309
Query: 127 LRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNIS 186
L+ E +L + + N + + + K I + L
Sbjct: 310 LKRKEHALLSGQGSETER-LECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQK 368
Query: 187 ENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNL 240
+ L + + + LQ + + S L+ L + + +
Sbjct: 369 KKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEM 422
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 4e-28
Identities = 54/352 (15%), Positives = 104/352 (29%), Gaps = 62/352 (17%)
Query: 122 IKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQ 181
I + + ++++ L + S + ++ L +S N L L+
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 182 ILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINE----- 236
+LN+S N L + +LS++ L L NN + G ++ETL N
Sbjct: 62 LLNLSSNVLY-ETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISRVS 115
Query: 237 ---HSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENG 293
+ + L N + ++ +D+ N + V
Sbjct: 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI-------------DTVNFA 162
Query: 294 YLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDIL 353
L L L L N + + K +
Sbjct: 163 ELAASSDTLE----------------HLNLQYNF---IYDVKGQVVFAKLKT-------- 195
Query: 354 ELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNK 413
LDLS+N+L + E + ++L +N L I ++ + +E DL N
Sbjct: 196 -----LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG 248
Query: 414 LNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGP 465
+ + + V+ + E+ T + G
Sbjct: 249 FH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDL 299
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 6e-25
Identities = 50/256 (19%), Positives = 97/256 (37%), Gaps = 26/256 (10%)
Query: 32 LPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSN 91
+ ++ +S + + S ++ LD+S N + ++S + + LE L+LS+
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67
Query: 92 NNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMG 151
N + +L+ L L L NN LL + L +NN +S +
Sbjct: 68 NVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSC--S 117
Query: 152 NFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL--NLSSVEHLYLQ 209
+ + ++ N + + + +Q L++ N + + L + ++EHL LQ
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177
Query: 210 NNALGGSIPNTFFRGSALETLDLR----------INEHSNLRTLLLRGNYLQGPIPHQLC 259
N + + L+TLDL + + + LR N L I L
Sbjct: 178 YNFI-YDVKGQVVFAK-LKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALR 234
Query: 260 HLRKLGIMDISHNRLN 275
+ L D+ N +
Sbjct: 235 FSQNLEHFDLRGNGFH 250
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 1e-24
Identities = 47/277 (16%), Positives = 102/277 (36%), Gaps = 26/277 (9%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
++ +S + ++ + +++S N + + L LL++SSN
Sbjct: 12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRS 129
L + + +L LDL+NN Q + L+ NNN S ++ +
Sbjct: 71 YETLD---LESLSTLRTLDLNNNYV--QELL---VGPSIETLHAANNNIS-RVSCSRGQG 121
Query: 130 TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEG-NIPVQFNNLASLQILNISEN 188
+ ++NN+++ G S +Q L + N ++ N + +L+ LN+ N
Sbjct: 122 --KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179
Query: 189 NLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLR----------INEHS 238
+ + + + ++ L L +N L + F + + + LR +
Sbjct: 180 FIY-DVKGQVVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQ 237
Query: 239 NLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLN 275
NL LRGN + + + ++ +
Sbjct: 238 NLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVK 273
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 1e-19
Identities = 44/218 (20%), Positives = 90/218 (41%), Gaps = 24/218 (11%)
Query: 80 NCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISN 139
N + +++++ + + + L L N S L T+L +L++S+
Sbjct: 8 NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67
Query: 140 NRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLN 199
N L + + STL+ L ++ N ++ + S++ L+ + NN+ S +S
Sbjct: 68 NVLY-ETLD-LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI--SRVSCSR 118
Query: 200 LSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINE------------HSNLRTLLLRG 247
+++YL NN + S ++ LDL++NE L L L+
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178
Query: 248 NYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNM 285
N++ + Q+ KL +D+S N+L + +
Sbjct: 179 NFIYD-VKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSA 213
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 6e-17
Identities = 31/229 (13%), Positives = 73/229 (31%), Gaps = 13/229 (5%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
+ +L + N+ S ++ + G + ++ N G ++ LD+ N
Sbjct: 101 IETLHAANNNIS-RVSCSRGQGKKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEI 156
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRS 129
L + +LE L+L N + +L L L +N + + +
Sbjct: 157 DTVNFAELAASSDTLEHLNLQYNFI--YDVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSA 213
Query: 130 TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENN 189
+ + + NN+L I + L+ + N ++ + ++ +++
Sbjct: 214 AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFSKNQRVQTVAKQT 271
Query: 190 LSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHS 238
+ +V L +P F + L + H
Sbjct: 272 VKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFA----DRLIALGHHHHH 316
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 2e-12
Identities = 41/238 (17%), Positives = 77/238 (32%), Gaps = 48/238 (20%)
Query: 216 SIPNTFFRGSALETLDLRINE-----------HSNLRTLLLRGNYLQGPIPHQLCHLRKL 264
+I G+ + + + N++ L L GN L L KL
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 265 GIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLD 324
++++S N L + LR L L+
Sbjct: 61 ELLNLSSNVLY-ETLD------LESLST---------LR----------------TLDLN 88
Query: 325 GNDGRMLGALVAVNF--MTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHG 382
N + L ++ N + + L+NN++T + G +
Sbjct: 89 NNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQY 148
Query: 383 LNLSHNFLSG-SIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLS 439
L+L N + + E ++ +E L+L +N + + Q+ L T D+S N L+
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA 204
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 6e-25
Identities = 69/367 (18%), Positives = 126/367 (34%), Gaps = 76/367 (20%)
Query: 83 SLEWLDLSNNNFV---GQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRS-TELMVLDIS 138
LDL N F ++ +L L L N S ++ G + L L +
Sbjct: 33 ETRLLDLGKNRIKTLNQDEFASFPHLEEL---ELNENIVS-AVEPGAFNNLFNLRTLGLR 88
Query: 139 NNRLSGHIPSWM-GNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMIST 197
+NRL IP + S L L +S+N + + F +L +L+ L + +N+L
Sbjct: 89 SNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRA 147
Query: 198 L-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPH 256
L+S+E L L+ L SIP L L LR + +
Sbjct: 148 FSGLNSLEQLTLEKCNLT-SIPTEALSHL------------HGLIVLRLRHLNINAIRDY 194
Query: 257 QLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYN 316
L +L +++ISH ++ L
Sbjct: 195 SFKRLYRLKVLEISHWPYLDTMTPNCLYGL------------------------------ 224
Query: 317 STVELLLDGNDGRML--GALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEI 374
+ L + + + A+ + ++ L+LS N ++ I +
Sbjct: 225 NLTSLSITHCNLTAVPYLAVRHLVYLRF----------------LNLSYNPIS-TIEGSM 267
Query: 375 -GDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQL-TELHSLSTFD 432
+L + + L L+ P +F L + L++S N+L + + + +L T
Sbjct: 268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLI 326
Query: 433 VSYNNLS 439
+ N L+
Sbjct: 327 LDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 3e-24
Identities = 77/373 (20%), Positives = 130/373 (34%), Gaps = 71/373 (19%)
Query: 49 IPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNY-MNLTR 107
+P I RLLD+ N L+Q + LE L+L+ N V + P NL
Sbjct: 26 VPEGI--PTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFN 81
Query: 108 LWALYLYNNNFSGKIKDGLLRS-TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLL 166
L L L +N I G+ + L LDIS N++ + + L+ L + N L
Sbjct: 82 LRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140
Query: 167 EGNIPVQ-FNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRG 224
I + F+ L SL+ L + + NL+ L +L + L L++ + +I + F+
Sbjct: 141 V-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKR 198
Query: 225 SALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITN 284
L+ L + + + L + I+H L ++P
Sbjct: 199 L------------YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYL--- 242
Query: 285 MLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNR 344
+ LR L L N +
Sbjct: 243 -AVRHLVY---------LR----------------FLNLSYNPISTIEG----------- 265
Query: 345 YESYKGDILELMAGLDLSNNELTGDIPSEI-GDLQNIHGLNLSHNFLSGSIPES-FSNLK 402
L + + L +L + L + LN+S N L+ ++ ES F ++
Sbjct: 266 -SMLHE--LLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVG 320
Query: 403 MIESLDLSHNKLN 415
+E+L L N L
Sbjct: 321 NLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 102 bits (257), Expect = 2e-23
Identities = 64/327 (19%), Positives = 119/327 (36%), Gaps = 64/327 (19%)
Query: 129 STELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQ-FNNLASLQILNISE 187
TE +LD+ NR+ +F L+ L +++N++ + FNNL +L+ L +
Sbjct: 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRS 89
Query: 188 NNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRINE--------- 236
N L + LS++ L + N + + + F+ L++L++ N+
Sbjct: 90 NRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAF 148
Query: 237 --HSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGY 294
++L L L L L HL L ++ + H +N I + F R+
Sbjct: 149 SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-----AIRDYSFKRLYR-- 201
Query: 295 LYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILE 354
L+ L + ++ G L
Sbjct: 202 -------LK----------------VLEISHW-----------PYLDTMTPNCLYGLNLT 227
Query: 355 LMAGLDLSNNELTGDIPSE-IGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNK 413
L +++ LT +P + L + LNLS+N +S L ++ + L +
Sbjct: 228 S---LSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ 283
Query: 414 LNGQIPPQ-LTELHSLSTFDVSYNNLS 439
L + P L+ L +VS N L+
Sbjct: 284 LA-VVEPYAFRGLNYLRVLNVSGNQLT 309
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 7e-23
Identities = 51/283 (18%), Positives = 104/283 (36%), Gaps = 33/283 (11%)
Query: 12 SLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAG 71
++ R F +P+ + + +++ KN + L L+++ N +
Sbjct: 15 AVLCHRKRFV-AVPEG---IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS- 69
Query: 72 ELSQSLVINCFSLEWLDLSNNNFV---GQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLR 128
+ N F+L L L +N +F L+ L L + N + D + +
Sbjct: 70 AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFT---GLSNLTKLDISENKIV-ILLDYMFQ 125
Query: 129 S-TELMVLDISNNRLSGHIPSWMGNFS---TLQILSMSKNLLEGNIPVQ-FNNLASLQIL 183
L L++ +N L +I FS +L+ L++ K L +IP + ++L L +L
Sbjct: 126 DLYNLKSLEVGDNDLV-YISH--RAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVL 181
Query: 184 NISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINE------ 236
+ N++ + L ++ L + + ++ G L +L +
Sbjct: 182 RLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY 241
Query: 237 -----HSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRL 274
LR L L N + L L +L + + +L
Sbjct: 242 LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 93.6 bits (233), Expect = 2e-20
Identities = 56/285 (19%), Positives = 106/285 (37%), Gaps = 28/285 (9%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSI-GKMQGLRLLDVSSNN 68
L L+++ N S + L L + + N + IP + + L LD+S N
Sbjct: 58 LEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENK 115
Query: 69 FAGELSQSLVINCFSLEWLDLSNNNFVGQIFPN-YMNLTRLWALYLYNNNFSGKIKDGLL 127
L + + ++L+ L++ +N+ V I + L L L L N + I L
Sbjct: 116 IV-ILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT-SIPTEAL 172
Query: 128 RS-TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNIS 186
L+VL + + ++ L++L +S + +L L+I+
Sbjct: 173 SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT 232
Query: 187 ENNLSGSMISTL---NLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRINE------ 236
NL + + L +L + L L N + +I + L+ + L +
Sbjct: 233 HCNL--TAVPYLAVRHLVYLRFLNLSYNPI-STIEGSMLHELLRLQEIQLVGGQLAVVEP 289
Query: 237 -----HSNLRTLLLRGNYLQGPIPHQLCH-LRKLGIMDISHNRLN 275
+ LR L + GN L + + H + L + + N L
Sbjct: 290 YAFRGLNYLRVLNVSGNQLTT-LEESVFHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 6e-07
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 5/82 (6%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
+ +P I L+L N + + F++ +E L+L+ N + +
Sbjct: 16 VLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-SAV 71
Query: 419 PPQ-LTELHSLSTFDVSYNNLS 439
P L +L T + N L
Sbjct: 72 EPGAFNNLFNLRTLGLRSNRLK 93
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 8e-07
Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Query: 359 LDLSNNELTGDIPSEI-GDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 417
L++ +N+L I L ++ L L L+ E+ S+L + L L H +N
Sbjct: 133 LEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-A 190
Query: 418 IPPQ-LTELHSLSTFDVSYNNLSGPIPD 444
I L+ L ++S+ +
Sbjct: 191 IRDYSFKRLYRLKVLEISHWPYLDTMTP 218
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 9e-25
Identities = 65/370 (17%), Positives = 122/370 (32%), Gaps = 73/370 (19%)
Query: 83 SLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRS-TELMVLDISNNR 141
+ + + L + N+ K+ LL S ++ +L++++ +
Sbjct: 22 VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQ 80
Query: 142 LSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQ-FNNLASLQILNISENNLSGSMISTL-N 199
+ T+Q L M N + +P F N+ L +L + N+LS N
Sbjct: 81 IEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 139
Query: 200 LSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRINE--------HSNLRTLLLRGNYL 250
+ L + NN L I + F+ ++L+ L L N +L + N L
Sbjct: 140 TPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLL 198
Query: 251 QGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAY 310
L + +D SHN +N + + +
Sbjct: 199 S-----TLAIPIAVEELDASHNSINV-----VRGPVNVELT------------------- 229
Query: 311 VSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDI 370
L L N+ L+ + + +DLS NEL I
Sbjct: 230 ---------ILKLQHNNLTDTAWLLNYPGLVE----------------VDLSYNELE-KI 263
Query: 371 PSEI-GDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLS 429
+Q + L +S+N L ++ + ++ LDLSHN L + + L
Sbjct: 264 MYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE 321
Query: 430 TFDVSYNNLS 439
+ +N++
Sbjct: 322 NLYLDHNSIV 331
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 9e-23
Identities = 58/279 (20%), Positives = 106/279 (37%), Gaps = 32/279 (11%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
+ ++ KLP + ++ +N++ E + ++ L + N
Sbjct: 47 QKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI 105
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYM--NLTRLWALYLYNNNFSGKIKDGLL 127
L + N L L L N+ P + N +L L + NNN +I+D
Sbjct: 106 R-YLPPHVFQNVPLLTVLVLERNDL--SSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTF 161
Query: 128 RS-TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNIS 186
++ T L L +S+NRL+ H+ +L ++S NLL +++ L+ S
Sbjct: 162 QATTSLQNLQLSSNRLT-HVDL--SLIPSLFHANVSYNLLS-----TLAIPIAVEELDAS 213
Query: 187 ENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINE---------- 236
N+++ ++ + L LQ+N L + L +DL NE
Sbjct: 214 HNSIN--VVRGPVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFV 269
Query: 237 -HSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRL 274
L L + N L + + L ++D+SHN L
Sbjct: 270 KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL 307
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 6e-22
Identities = 57/252 (22%), Positives = 100/252 (39%), Gaps = 28/252 (11%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSI-GKMQGLRLLDVSSNN 68
L L + RN S LP+ + PKL +++S N+ E I L+ L +SSN
Sbjct: 119 LTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNR 176
Query: 69 FAGELSQSLVINCF-SLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLL 127
+ ++ SL ++S N + + L +N+ + ++ +
Sbjct: 177 L-----THVDLSLIPSLFHANVSYNLL--STLAIPIAVEEL---DASHNSIN-VVRGPVN 225
Query: 128 RSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISE 187
L +L + +N L+ +W+ N+ L + +S N LE + F + L+ L IS
Sbjct: 226 VE--LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281
Query: 188 NNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINE--------HSN 239
N L + + +++ L L +N L + + LE L L N H
Sbjct: 282 NRLVALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSIVTLKLSTHHT 340
Query: 240 LRTLLLRGNYLQ 251
L+ L L N
Sbjct: 341 LKNLTLSHNDWD 352
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 2e-21
Identities = 62/370 (16%), Positives = 119/370 (32%), Gaps = 51/370 (13%)
Query: 59 LRLLDVSSNNFAGELSQSL-VINCFSLEWLDLSNNNFV---GQIFPNYMNLTRLWALYLY 114
DV + ++ I + + + N+ + ++ + L L
Sbjct: 21 CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL---LNLN 77
Query: 115 NNNFSGKIKDGLLRS-TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQ 173
+ +I + L + N + P N L +L + +N L ++P
Sbjct: 78 DLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRG 135
Query: 174 -FNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLD 231
F+N L L++S NNL T +S+++L L +N L + + L +
Sbjct: 136 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVDLSLIPS--LFHAN 192
Query: 232 LRINE------HSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNM 285
+ N + L N + L L + HN L +
Sbjct: 193 VSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTIL---KLQHNNLT-DTAWLLN-- 246
Query: 286 LFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRY 345
+ + L ++ + L + N LVA+N +
Sbjct: 247 -YPGLVEVDLSYNELE---KIMYHPFVKMQRLE-RLYISNN------RLVALNLYGQP-- 293
Query: 346 ESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIE 405
+ + LDLS+N L + + L L HN + ++ S ++
Sbjct: 294 -------IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLK 342
Query: 406 SLDLSHNKLN 415
+L LSHN +
Sbjct: 343 NLTLSHNDWD 352
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 1e-19
Identities = 55/291 (18%), Positives = 109/291 (37%), Gaps = 33/291 (11%)
Query: 8 HGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSN 67
+ +H +++ + G L + ++ + + + + LL+++
Sbjct: 24 YDVHIDMQTQDVYFGFEDIT----LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 79
Query: 68 NFAGELSQSLVINCFSLEWLDLSNNNFV---GQIFPNYMNLTRLWALYLYNNNFSGKIKD 124
E+ +++ L + N +F N+ L L L N+ S +
Sbjct: 80 QIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF---QNVPLLTVLVLERNDLS-SLPR 134
Query: 125 GLLRS-TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQIL 183
G+ + +L L +SNN L ++LQ L +S N L V + + SL
Sbjct: 135 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHA 191
Query: 184 NISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINE------- 236
N+S N LS + +VE L +N++ + L L L+ N
Sbjct: 192 NVSYNLLS----TLAIPIAVEELDASHNSIN-VVRGPVNVE--LTILKLQHNNLTDTAWL 244
Query: 237 --HSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNM 285
+ L + L N L+ + H +++L + IS+NRL ++ +
Sbjct: 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPI 294
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 1e-19
Identities = 54/333 (16%), Positives = 112/333 (33%), Gaps = 52/333 (15%)
Query: 122 IKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQ 181
I L + I + + +I++ + + ++ ++
Sbjct: 13 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72
Query: 182 ILNISENNLSG-SMISTLNLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRINE--- 236
+LN+++ + + +++ LY+ NA+ +P F+ L L L N+
Sbjct: 73 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAI-RYLPPHVFQNVPLLTVLVLERNDLSS 131
Query: 237 --------HSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFS 288
L TL + N L+ L + +S NRL + L
Sbjct: 132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-----HVDLSLIP 186
Query: 289 RVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNF--MTKNRYE 346
+ + N L +AV + N
Sbjct: 187 SLF----------------------------HANVSYNLLSTLAIPIAVEELDASHNSIN 218
Query: 347 SYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIES 406
+G + + L L +N LT D + + + ++LS+N L + F ++ +E
Sbjct: 219 VVRGPVNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 276
Query: 407 LDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLS 439
L +S+N+L + + +L D+S+N+L
Sbjct: 277 LYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 308
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 3e-11
Identities = 36/182 (19%), Positives = 71/182 (39%), Gaps = 13/182 (7%)
Query: 5 SAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDV 64
+ + LD S NS + + V +L + + N+ + + GL +D+
Sbjct: 202 AIPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDL 255
Query: 65 SSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKD 124
S N ++ + LE L +SNN V + + L L L +N+ ++
Sbjct: 256 SYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVER 312
Query: 125 GLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGN-IPVQFNNLASLQIL 183
+ L L + +N + + TL+ L++S N + N + F N+A +
Sbjct: 313 NQPQFDRLENLYLDHNSIV-TLKL--STHHTLKNLTLSHNDWDCNSLRALFRNVARPAVD 369
Query: 184 NI 185
+
Sbjct: 370 DA 371
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 1e-24
Identities = 78/382 (20%), Positives = 125/382 (32%), Gaps = 85/382 (22%)
Query: 105 LTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKN 164
L + + + + D L + L I +N L+ +P+ L+ L +S N
Sbjct: 39 NNGNAVLNVGESGLT-TLPDCLPAH--ITTLVIPDNNLT-SLPALPPE---LRTLEVSGN 91
Query: 165 LLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRG 224
L ++PV L L I + +L S + L++ N L S+P
Sbjct: 92 QLT-SLPVLPPGLLELSIFSNPLTHLPAL------PSGLCKLWIFGNQLT-SLPVLP--- 140
Query: 225 SALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITN 284
L+ L + N L +P L KL +N+L S+P +
Sbjct: 141 -------------PGLQELSVSDNQLAS-LPALPSELCKL---WAYNNQLT-SLPMLPSG 182
Query: 285 MLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRML----GALVAVNFM 340
+ EL + N L L +
Sbjct: 183 L---------------------------------QELSVSDNQLASLPTLPSELYKLW-A 208
Query: 341 TKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSN 400
NR S L L +S N LT +P +L+ L +S N L+ S+P S
Sbjct: 209 YNNRLTSLPALPSGLKE-LIVSGNRLT-SLPVLPSELKE---LMVSGNRLT-SLPMLPSG 262
Query: 401 LKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNL 460
L SL + N+L ++P L L S +T ++ N LS + T Y G +
Sbjct: 263 L---LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAP-GYSGPI 317
Query: 461 FLCGPAINKGCTNLPELLEPSS 482
A L ++
Sbjct: 318 IRFDMAGASAPRETRALHLAAA 339
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 6e-24
Identities = 59/284 (20%), Positives = 99/284 (34%), Gaps = 46/284 (16%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
+ +L I N+ + LP P+L + +S N ++P + L + +
Sbjct: 63 ITTLVIPDNNLT-SLPAL----PPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHL 116
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRS 129
S L L + N P L L + +N + +
Sbjct: 117 PALPS--------GLCKLWIFGNQL--TSLPV--LPPGLQELSVSDNQLA-SLPALP--- 160
Query: 130 TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENN 189
+EL L NN+L+ +P LQ LS+S N L ++P + L L N +
Sbjct: 161 SELCKLWAYNNQLT-SLPMLPSG---LQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTS 215
Query: 190 LSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRIN-------EHSNLRT 242
L S ++ L + N L S+P S L+ L + N S L +
Sbjct: 216 LPAL------PSGLKELIVSGNRL-TSLPVLP---SELKELMVSGNRLTSLPMLPSGLLS 265
Query: 243 LLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNML 286
L + N L +P L HL +++ N L+ +
Sbjct: 266 LSVYRNQLTR-LPESLIHLSSETTVNLEGNPLS-ERTLQALREI 307
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 99.2 bits (247), Expect = 5e-22
Identities = 73/355 (20%), Positives = 120/355 (33%), Gaps = 90/355 (25%)
Query: 81 CFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNN 140
L++ + P+ + + L + +NN + + EL L++S N
Sbjct: 39 NNGNAVLNVGESGL--TTLPDCL-PAHITTLVIPDNNLT-SLPALP---PELRTLEVSGN 91
Query: 141 RLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNL 200
+L+ +P L I S L + L L I N L+ + L
Sbjct: 92 QLT-SLPVLPPGLLELSIFSNPLTHLP-------ALPSGLCKLWIFGNQLTS--LPVL-P 140
Query: 201 SSVEHLYLQNNALGGSIPNTFFRGSALETLDLRIN-------EHSNLRTLLLRGNYLQGP 253
++ L + +N L S+P S L L N S L+ L + N L
Sbjct: 141 PGLQELSVSDNQL-ASLPALP---SELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS- 195
Query: 254 IPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSN 313
+P L KL +NRL S+PA + L+
Sbjct: 196 LPTLPSELYKL---WAYNNRLT-SLPALPSG-----------------LK---------- 224
Query: 314 YYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSE 373
EL++ GN L L + L +S N LT +P
Sbjct: 225 ------ELIVSGNRLTSLPVL------------------PSELKELMVSGNRLT-SLPML 259
Query: 374 IGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSL 428
L + L++ N L+ +PES +L +++L N L+ + L E+ S
Sbjct: 260 PSGLLS---LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSA 310
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 72.2 bits (177), Expect = 2e-13
Identities = 55/282 (19%), Positives = 89/282 (31%), Gaps = 32/282 (11%)
Query: 9 GLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNN 68
GL L +S N + LP +L + N ++P GL+ L VS N
Sbjct: 142 GLQELSVSDNQLA-SLPAL----PSELCKLWAYNNQLT-SLPMLPS---GLQELSVSDNQ 192
Query: 69 FAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLR 128
A L L L NN P + L L + N + +
Sbjct: 193 LA-SLPTLP----SELYKLWAYNNRLTS--LPA--LPSGLKELIVSGNRLTS-LPVLP-- 240
Query: 129 STELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISEN 188
+EL L +S NRL+ +P L LS+ +N L +P +L+S +N+ N
Sbjct: 241 -SELKELMVSGNRLT-SLPMLPSG---LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN 294
Query: 189 NLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGN 248
L S L ++ + G I SA ++ G
Sbjct: 295 PL-----SERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGE 349
Query: 249 YLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRV 290
H + +RL+ + +++
Sbjct: 350 PAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKAQI 391
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 3e-08
Identities = 34/185 (18%), Positives = 68/185 (36%), Gaps = 27/185 (14%)
Query: 257 QLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYN 316
+ C ++++ + L ++P C+ + + + ++ +
Sbjct: 35 RACLNNGNAVLNVGESGLT-TLPDCL----PAHITTLVIPDNNLT--------SLPALPP 81
Query: 317 STVELLLDGNDGRMLGALVA--VNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEI 374
L + GN L L + + ++ + + L + N+LT +P
Sbjct: 82 ELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-SLPVLP 140
Query: 375 GDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVS 434
LQ L++S N L+ S+P S L L +N+L +P + L L VS
Sbjct: 141 PGLQE---LSVSDNQLA-SLPALPSELC---KLWAYNNQLT-SLPMLPSGLQEL---SVS 189
Query: 435 YNNLS 439
N L+
Sbjct: 190 DNQLA 194
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 1e-04
Identities = 12/97 (12%), Positives = 26/97 (26%), Gaps = 6/97 (6%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN--G 416
L + N+LT +P + L + +NL N LS ++ + S +
Sbjct: 266 LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI---TSAPGYSGPIIRFD 321
Query: 417 QIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDE 453
+ + + +
Sbjct: 322 MAGASAPRETRALHLAAADWLVPAREGEPAPADRWHM 358
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 2e-24
Identities = 89/445 (20%), Positives = 146/445 (32%), Gaps = 105/445 (23%)
Query: 32 LPKLVYMNISKNSFEGNIPSSIGK-------------MQGLRLLDVSSNNFAGELSQSLV 78
+ + + +E N P G+ + L++++ SL
Sbjct: 33 VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL-----SSLP 87
Query: 79 INCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDIS 138
LE L S N+ ++ +L L S L L +S
Sbjct: 88 ELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVS 139
Query: 139 NNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL 198
NN+L +P + N S L+I+ + N L+ +P + SL+ + N L +
Sbjct: 140 NNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLP---DLPPSLEFIAAGNNQLE-ELPELQ 192
Query: 199 NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHS---------NLRTLLLRGNY 249
NL + +Y NN+L +P+ LE++ N L T+ N
Sbjct: 193 NLPFLTAIYADNNSLK-KLPDLPLS---LESIVAGNNILEELPELQNLPFLTTIYADNNL 248
Query: 250 LQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDA 309
L+ +P L L ++ N L +P + L
Sbjct: 249 LKT-LPDLPPSLEAL---NVRDNYLT-DLPELPQS---------------------LTFL 282
Query: 310 YVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGD 369
VS S + L L L + N S L L++SNN+L +
Sbjct: 283 DVSENIFSGLSELPPN-----LYYL----NASSNEIRSLCDLPPSLEE-LNVSNNKLI-E 331
Query: 370 IPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG--QIPPQLTELH- 426
+P+ L+ L S N L+ +PE NLK L + +N L IP + +L
Sbjct: 332 LPALPPRLER---LIASFNHLA-EVPELPQNLK---QLHVEYNPLREFPDIPESVEDLRM 384
Query: 427 ------------SLSTFDVSYNNLS 439
+L V N L
Sbjct: 385 NSHLAEVPELPQNLKQLHVETNPLR 409
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 2e-24
Identities = 78/415 (18%), Positives = 144/415 (34%), Gaps = 66/415 (15%)
Query: 49 IPSSIGKMQGLRLLDVSSNNFAGELSQSL------------VINCFSLEWLDLSNNNFVG 96
+P ++ + + + L+L+N
Sbjct: 26 MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL-- 83
Query: 97 QIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTL 156
P L +L N+ + ++ + L+V + + LS P L
Sbjct: 84 SSLPE--LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL-------L 133
Query: 157 QILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGS 216
+ L +S N LE +P + N + L+I+++ N+L + S+E + NN L
Sbjct: 134 EYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLPD--LPPSLEFIAAGNNQL-EE 187
Query: 217 IPNTFFRGSALETLDLRIN-------EHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDI 269
+P L + N +L +++ N L+ +L +L L +
Sbjct: 188 LPE-LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE--ELPELQNLPFLTTIYA 244
Query: 270 SHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGR 329
+N L ++P ++ V + YL + + L VS S + L
Sbjct: 245 DNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQS-LTFLDVSENIFSGLSELPPN---- 298
Query: 330 MLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNF 389
L L + N S L L++SNN+L ++P+ L+ L S N
Sbjct: 299 -LYYL----NASSNEIRSLCDLPPSLEE-LNVSNNKLI-ELPALPPRLER---LIASFNH 348
Query: 390 LSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD 444
L+ +PE NLK L + +N L + P + L N+ +P+
Sbjct: 349 LA-EVPELPQNLK---QLHVEYNPLR-EFPDIPESVEDL-----RMNSHLAEVPE 393
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 9e-23
Identities = 82/416 (19%), Positives = 144/416 (34%), Gaps = 85/416 (20%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
L SL + N+ L + P L Y+ +S N E +P + L+++DV +N+
Sbjct: 113 LKSLLVDNNNLK-ALSD----LPPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSL 165
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRS 129
+L SLE++ NN + P NL L A+Y NN+ K+ D
Sbjct: 166 K-KLPDLPP----SLEFIAAGNNQL--EELPELQNLPFLTAIYADNNSLK-KLPDLP--- 214
Query: 130 TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENN 189
L + NN L +P + N L + NLL+ +P + SL+ LN+ +N
Sbjct: 215 LSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLK-TLP---DLPPSLEALNVRDNY 268
Query: 190 LSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRIN-------EHSNLRT 242
L+ +L+ ++ + L PN L L+ N +L
Sbjct: 269 LTDLPELPQSLTFLDVSENIFSGLSELPPN-------LYYLNASSNEIRSLCDLPPSLEE 321
Query: 243 LLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVL 302
L + N L +P L +L S N L +P N+
Sbjct: 322 LNVSNNKLIE-LPALPPRLERL---IASFNHLA-EVPELPQNL----------------- 359
Query: 303 RMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAG---L 359
+L ++ N R + + R S+ ++ EL L
Sbjct: 360 ----------------KQLHVEYNPLREFPDIP--ESVEDLRMNSHLAEVPELPQNLKQL 401
Query: 360 DLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN 415
+ N L + P +++ L ++ + + +E H+ +
Sbjct: 402 HVETNPLR-EFPDIPESVED---LRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 4e-19
Identities = 74/381 (19%), Positives = 134/381 (35%), Gaps = 66/381 (17%)
Query: 83 SLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLL-------------RS 129
L+ ++N ++ N+ Y + + G
Sbjct: 12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD 70
Query: 130 TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENN 189
+ L+++N LS +P + L+ L S N L +P +L SL + N +
Sbjct: 71 RQAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 125
Query: 190 LSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRIN-------EHSNLRT 242
LS +E+L + NN L +P S L+ +D+ N +L
Sbjct: 126 LSD------LPPLLEYLGVSNNQL-EKLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEF 177
Query: 243 LLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVL 302
+ N L+ +L +L L + +N L +P ++ N L +
Sbjct: 178 IAAGNNQLE--ELPELQNLPFLTAIYADNNSLK-KLPDLPLSLESIVAGNNILEELPELQ 234
Query: 303 RMYLDDAYVSNYYNSTVELLLDGNDGR----MLGALVAVNFMTKNRYESYKGDILELMAG 358
+ + D N + + +L A+N + N L
Sbjct: 235 NL-----------PFLTTIYADNNLLKTLPDLPPSLEALN-VRDNYLTDLPELPQSLTF- 281
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
LD+S N +G + +L LN S N + S+ + +L E L++S+NKL ++
Sbjct: 282 LDVSENIFSG-LSELPPNLYY---LNASSNEIR-SLCDLPPSL---EELNVSNNKLI-EL 332
Query: 419 PPQLTELHSLSTFDVSYNNLS 439
P L L S+N+L+
Sbjct: 333 PALPPRLERL---IASFNHLA 350
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 6e-19
Identities = 60/278 (21%), Positives = 103/278 (37%), Gaps = 51/278 (18%)
Query: 9 GLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNN 68
H L+++ S LP+ P L + S NS +P ++ L + + +
Sbjct: 72 QAHELELNNLGLS-SLPEL----PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 125
Query: 69 FAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLR 128
+ LE+L +SNN + P N + L + + NN+ K+ D
Sbjct: 126 LSDLPP--------LLEYLGVSNNQL--EKLPELQNSSFLKIIDVDNNSLK-KLPDLP-- 172
Query: 129 STELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISEN 188
L + NN+L +P + N L + N L+ +P + SL+ + N
Sbjct: 173 -PSLEFIAAGNNQLE-ELPE-LQNLPFLTAIYADNNSLK-KLP---DLPLSLESIVAGNN 225
Query: 189 NLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRG 247
L + L NL + +Y NN L ++P+ +L L +R
Sbjct: 226 ILE--ELPELQNLPFLTTIYADNNLLK-TLPD----------------LPPSLEALNVRD 266
Query: 248 NYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNM 285
NYL +P L L D+S N + + N+
Sbjct: 267 NYLTD-LPELPQSLTFL---DVSENIFS-GLSELPPNL 299
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 1e-18
Identities = 56/298 (18%), Positives = 108/298 (36%), Gaps = 43/298 (14%)
Query: 2 QLTSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRL 61
L+ L L +S N KLP+ L +++ NS + +P L
Sbjct: 125 ALSDLPPLLEYLGVSNNQLE-KLPELQN--SSFLKIIDVDNNSLK-KLPDLPPS---LEF 177
Query: 62 LDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGK 121
+ +N EL + + N L + NN+ ++ ++L + NN
Sbjct: 178 IAAGNNQLE-ELPE--LQNLPFLTAIYADNNSLK-KLPDLPLSLES---IVAGNNILE-- 228
Query: 122 IKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQ 181
L L + NN L +P + L+ L++ N L ++P +L L
Sbjct: 229 ELPELQNLPFLTTIYADNNLLK-TLPDLPPS---LEALNVRDNYLT-DLPELPQSLTFLD 283
Query: 182 ILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRIN------ 235
+ + LS ++ +L +N + S+ + +LE L++ N
Sbjct: 284 VSENIFSGLSEL------PPNLYYLNASSNEI-RSLCDLP---PSLEELNVSNNKLIELP 333
Query: 236 -EHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVEN 292
L L+ N+L +P +L++L + +N L P ++ R+ +
Sbjct: 334 ALPPRLERLIASFNHLAE-VPELPQNLKQL---HVEYNPLR-EFPDIPESVEDLRMNS 386
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 5e-15
Identities = 48/267 (17%), Positives = 81/267 (30%), Gaps = 44/267 (16%)
Query: 175 NNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRI 234
+ LQ +NL+ + N+ S Y + + P + LR
Sbjct: 8 VSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67
Query: 235 NEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGY 294
L L L +P HL L S N L +P ++ V+N
Sbjct: 68 CLDRQAHELELNNLGLS-SLPELPPHLESL---VASCNSLT-ELPELPQSLKSLLVDN-- 120
Query: 295 LYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILE 354
+ +S+ L + N L L +F+
Sbjct: 121 -----------NNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKI------------ 157
Query: 355 LMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKL 414
+D+ NN L +P L+ + +N L +PE NL + ++ +N L
Sbjct: 158 ----IDVDNNSLK-KLPDLPPSLEF---IAAGNNQLE-ELPE-LQNLPFLTAIYADNNSL 207
Query: 415 NGQIPPQLTELHSLSTFDVSYNNLSGP 441
++P L S+ N L
Sbjct: 208 K-KLPDLPLSLESI---VAGNNILEEL 230
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 1e-11
Identities = 38/243 (15%), Positives = 76/243 (31%), Gaps = 40/243 (16%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
L ++ N LP P L +N+ N ++P + L + + +
Sbjct: 239 LTTIYADNNLLK-TLPDL----PPSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGL 292
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRS 129
+ +L +L+ S+N + + L L + NN ++
Sbjct: 293 SELPP--------NLYYLNASSNEI--RSLCD--LPPSLEELNVSNNKLI-ELPALP--- 336
Query: 130 TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISEN- 188
L L S N L+ +P N L+ L + N L P ++ L++ +
Sbjct: 337 PRLERLIASFNHLA-EVPELPQN---LKQLHVEYNPLR-EFPDIPESVEDLRMNSHLAEV 391
Query: 189 ----------NLSGSMISTL--NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINE 236
++ + + SVE L + + + LE +
Sbjct: 392 PELPQNLKQLHVETNPLREFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451
Query: 237 HSN 239
H +
Sbjct: 452 HHH 454
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 29/169 (17%), Positives = 59/169 (34%), Gaps = 19/169 (11%)
Query: 130 TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISEN- 188
T L ++ L+ +P N + + + E N P + + + +
Sbjct: 11 TFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69
Query: 189 -------NLSGSMISTL--NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINE--- 236
L+ +S+L +E L N+L +P +L + +
Sbjct: 70 DRQAHELELNNLGLSSLPELPPHLESLVASCNSL-TELPELPQSLKSLLVDNNNLKALSD 128
Query: 237 -HSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITN 284
L L + N L+ +P +L + L I+D+ +N L +P +
Sbjct: 129 LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDLPPS 174
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 8e-09
Identities = 33/190 (17%), Positives = 62/190 (32%), Gaps = 27/190 (14%)
Query: 2 QLTSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRL 61
L+ L+ L+ S N L P L +N+S N +P+ + L
Sbjct: 291 GLSELPPNLYYLNASSNEIR-SLCDL----PPSLEELNVSNNKLI-ELPALPPR---LER 341
Query: 62 LDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGK 121
L S N+ A E+ + +L+ L + N + FP+ L N+ +
Sbjct: 342 LIASFNHLA-EVPELP----QNLKQLHVEYNPL--REFPDIPESVED----LRMNSHLAE 390
Query: 122 IKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQ 181
+ + L L + N L P + ++ L M+ + L+
Sbjct: 391 VPELP---QNLKQLHVETNPLR-EFPDIPES---VEDLRMNSERVVDPYEFAHETTDKLE 443
Query: 182 ILNISENNLS 191
++
Sbjct: 444 DDVFEHHHHH 453
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 3e-08
Identities = 31/225 (13%), Positives = 61/225 (27%), Gaps = 56/225 (24%)
Query: 230 LDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSR 289
++ R ++ L+ L + L +P + +++ + + + P
Sbjct: 3 INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61
Query: 290 VENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYK 349
V EL L+ L L
Sbjct: 62 VSR-----------------LRDCLDRQAHELELNNLGLSSLPELP-------------- 90
Query: 350 GDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPE------------- 396
+ L S N LT ++P L+++ N + LS P
Sbjct: 91 PHLESL----VASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK 145
Query: 397 --SFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLS 439
N ++ +D+ +N L ++P L + N L
Sbjct: 146 LPELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFI---AAGNNQLE 186
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 2e-24
Identities = 57/280 (20%), Positives = 108/280 (38%), Gaps = 29/280 (10%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
L L+++ N + P + L KL + I N S++ + LR L ++ +N
Sbjct: 68 LEYLNLNGNQITDISPLSN---LVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDN- 121
Query: 70 AGELSQSLVI-NCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLR 128
+S + N + L+L N+ + + N+T L L + + +
Sbjct: 122 ---ISDISPLANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVT--PIAN 175
Query: 129 STELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISEN 188
T+L L ++ N++ P + + ++L + N + P N+ L L I N
Sbjct: 176 LTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNN 231
Query: 189 NLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLR---------INEHSN 239
++ + NLS + L + N + S N + L+ L++ +N S
Sbjct: 232 KIT-DLSPLANLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQISDISVLNNLSQ 288
Query: 240 LRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIP 279
L +L L N L + L L + +S N + P
Sbjct: 289 LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 97.2 bits (243), Expect = 3e-22
Identities = 67/267 (25%), Positives = 105/267 (39%), Gaps = 35/267 (13%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
L L ++ ++ S P L K+ +N+ N ++ S + M GL L V+ +
Sbjct: 112 LRELYLNEDNISDISPLAN---LTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESK- 166
Query: 70 AGELSQSLVI-NCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLR 128
+ I N L L L+ N +LT L Y N + +
Sbjct: 167 ---VKDVTPIANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTAYVNQITDIT--PVAN 219
Query: 129 STELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISEN 188
T L L I NN+++ P + N S L L + N + +I +L L++LN+ N
Sbjct: 220 MTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS-DINA-VKDLTKLKMLNVGSN 275
Query: 189 NLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRG 247
+S IS L NLS + L+L NN LG +NL TL L
Sbjct: 276 QISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVI-------------GGLTNLTTLFLSQ 320
Query: 248 NYLQGPIPHQLCHLRKLGIMDISHNRL 274
N++ P L L K+ D ++ +
Sbjct: 321 NHITDIRP--LASLSKMDSADFANQVI 345
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 94.1 bits (235), Expect = 4e-21
Identities = 51/278 (18%), Positives = 108/278 (38%), Gaps = 31/278 (11%)
Query: 9 GLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNN 68
G +L + P L + + + K S + +++ + L V+
Sbjct: 1 GAATLATLPAPINQIFPDA---DLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEK 55
Query: 69 FAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLR 128
A S + +LE+L+L+ N NL +L LY+ N + L
Sbjct: 56 VA---SIQGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKIT--DISALQN 108
Query: 129 STELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISEN 188
T L L ++ + +S P + N + + L++ N ++ +N+ L L ++E+
Sbjct: 109 LTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTES 165
Query: 189 NLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHS--------- 238
+ ++ + NL+ + L L N + P ++L +N+ +
Sbjct: 166 KVKD--VTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPVANMT 221
Query: 239 NLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNG 276
L +L + N + P L +L +L ++I N+++
Sbjct: 222 RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD 257
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 2e-18
Identities = 38/238 (15%), Positives = 84/238 (35%), Gaps = 24/238 (10%)
Query: 51 SSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWA 110
+ + + ++Q S+ L ++ LT L
Sbjct: 16 FPDADLAEGIRAVLQKASVTDVVTQE---ELESITKLVVAGEKV--ASIQGIEYLTNLEY 70
Query: 111 LYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNI 170
L L N + L +L L I N+++ S + N + L+ L ++++ +
Sbjct: 71 LNLNGNQITDIS--PLSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDIS 126
Query: 171 PVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETL 230
P NL + LN+ N+ + N++ + +L + + + P + L +L
Sbjct: 127 P--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANL--TDLYSL 182
Query: 231 DLRINE---------HSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIP 279
L N+ ++L N + P + ++ +L + I +N++ P
Sbjct: 183 SLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP 238
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 2e-14
Identities = 38/185 (20%), Positives = 70/185 (37%), Gaps = 20/185 (10%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
L+SL ++ N + L L Y N P + M L L + +N
Sbjct: 179 LYSLSLNYNQIED--ISPLA-SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKI 233
Query: 70 AG--ELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSG-KIKDGL 126
L+ N L WL++ N +LT+L L + +N S + + L
Sbjct: 234 TDLSPLA-----NLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQISDISVLNNL 286
Query: 127 LRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNIS 186
++L L ++NN+L +G + L L +S+N + P +L+ + + +
Sbjct: 287 ---SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFA 341
Query: 187 ENNLS 191
+
Sbjct: 342 NQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 9e-11
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
L++ +N+++ S + +L ++ L L++N L E L + +L LS N +
Sbjct: 270 LNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327
Query: 419 PPQLTELHSLSTFDVSYNNLS 439
P L L + + D + +
Sbjct: 328 P--LASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 1e-10
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
L++ N+++ + + DL + LN+ N +S +NL + SL L++N+L +
Sbjct: 248 LEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNED 303
Query: 419 PPQLTELHSLSTFDVSYNNLSGPIP 443
+ L +L+T +S N+++ P
Sbjct: 304 MEVIGGLTNLTTLFLSQNHITDIRP 328
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 6e-10
Identities = 30/170 (17%), Positives = 64/170 (37%), Gaps = 24/170 (14%)
Query: 111 LYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNI 170
L + D L E + + ++ + ++ L ++ + +I
Sbjct: 5 LATLPAPINQIFPDADL--AEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SI 59
Query: 171 PVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETL 230
L +L+ LN++ N ++ + NL + +LY+ N + + SAL+ L
Sbjct: 60 Q-GIEYLTNLEYLNLNGNQIT-DISPLSNLVKLTNLYIGTNKI--TDI------SALQNL 109
Query: 231 DLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPA 280
+NLR L L + + P L +L K+ +++ N +
Sbjct: 110 -------TNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP 150
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 1e-08
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
L L+ + ++ S + +L ++ LNL N S SN+ + L ++ +K+ +
Sbjct: 115 LYLNEDNISD--ISPLANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKD-V 170
Query: 419 PPQLTELHSLSTFDVSYNNLSGPIP 443
P + L L + ++YN + P
Sbjct: 171 TP-IANLTDLYSLSLNYNQIEDISP 194
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 2e-08
Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
L+L+ N++T S + +L + L + N ++ + NL + L L+ + ++ I
Sbjct: 71 LNLNGNQITD--ISPLSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISD-I 125
Query: 419 PPQLTELHSLSTFDVSYNNLSGPIP 443
P L L + + ++ N+ +
Sbjct: 126 SP-LANLTKMYSLNLGANHNLSDLS 149
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 4e-08
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
L L+ N++ S + L ++H N ++ P +N+ + SL + +NK+
Sbjct: 182 LSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS 237
Query: 419 PPQLTELHSLSTFDVSYNNLSGP 441
P L L L+ ++ N +S
Sbjct: 238 P--LANLSQLTWLEIGTNQISDI 258
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 6/85 (7%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
L + I DL L ++ + L+ I L ++ K+
Sbjct: 5 LATLPAPIN-QI-FPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS-- 58
Query: 419 PPQLTELHSLSTFDVSYNNLSGPIP 443
+ L +L +++ N ++ P
Sbjct: 59 IQGIEYLTNLEYLNLNGNQITDISP 83
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 3e-24
Identities = 86/446 (19%), Positives = 150/446 (33%), Gaps = 66/446 (14%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
L ++ S N + P L KLV + ++ N + + + L L + +N
Sbjct: 70 LTQINFSNNQLTDITPLK---NLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQI 124
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRS 129
N +L L+LS+N LT L L N K L
Sbjct: 125 TDIDPLK---NLTNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQVTDLKPLANL--- 176
Query: 130 TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENN 189
T L LDIS+N++S S + + L+ L + N + P L +L L+++ N
Sbjct: 177 TTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ 232
Query: 190 LSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINE---------HSN 239
L I TL +L+++ L L NN + P + + L L L N+ +
Sbjct: 233 LKD--IGTLASLTNLTDLDLANNQISNLAPLSGL--TKLTELKLGANQISNISPLAGLTA 288
Query: 240 LRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIP-ACITNMLFSRVENGYLYGF 298
L L L N L+ P + +L+ L + + N ++ P + +T + N +
Sbjct: 289 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV 346
Query: 299 DIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAG 358
+ + + L N + L + +T+
Sbjct: 347 SSLANL-----------TNINWLSAGHNQ---ISDLTPLANLTRITQ------------- 379
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSI-PESFSNLKMIESLDLSHNKLNGQ 417
L L++ T + N+ N N I P + S+ D++ N +
Sbjct: 380 LGLNDQAWTNAPVNY---KANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPS-Y 435
Query: 418 IPPQLTELHSLSTFDVSYNNLSGPIP 443
T SG +
Sbjct: 436 TNEVSYTFSQPVTIGKGTTTFSGTVT 461
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 93.5 bits (233), Expect = 2e-20
Identities = 61/280 (21%), Positives = 108/280 (38%), Gaps = 33/280 (11%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
+ + + + + Q L ++ + + + + L ++ S+N
Sbjct: 26 KMKTVLGKTNVTDTVSQTD---LDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQL 80
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRS 129
+ + N L + ++NN NLT L L L+NN + L
Sbjct: 81 TDI---TPLKNLTKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITDIDPLKNL-- 133
Query: 130 TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENN 189
T L L++S+N +S + ++LQ LS + + NL +L+ L+IS N
Sbjct: 134 TNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNK 188
Query: 190 LSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRIN---------EHSN 239
+S IS L L+++E L NN + P + L+ L L N +N
Sbjct: 189 VSD--ISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKDIGTLASLTN 244
Query: 240 LRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIP 279
L L L N + P L L KL + + N+++ P
Sbjct: 245 LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 282
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 1e-15
Identities = 41/230 (17%), Positives = 83/230 (36%), Gaps = 25/230 (10%)
Query: 59 LRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNF 118
L ++ + ++ L N + +L ++ L
Sbjct: 3 LGSATITQDTPINQIFT--DTALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGI 58
Query: 119 SGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLA 178
DG+ L ++ SNN+L+ P + N + L + M+ N + P NL
Sbjct: 59 K--SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLT 112
Query: 179 SLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLR---- 233
+L L + N ++ I L NL+++ L L +N + S + ++L+ L
Sbjct: 113 NLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFGNQVT 168
Query: 234 ----INEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIP 279
+ + L L + N + L L L + ++N+++ P
Sbjct: 169 DLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITP 216
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 2e-13
Identities = 52/282 (18%), Positives = 104/282 (36%), Gaps = 40/282 (14%)
Query: 179 SLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHS 238
L I+++ + + L+ L + ++ T + TL
Sbjct: 2 PLGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDL--DQVTTLQADRLGIK 59
Query: 239 ---------NLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSR 289
NL + N L P L +L KL + +++N++ P + N+ +
Sbjct: 60 SIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANL--TN 113
Query: 290 VENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYK 349
+ L+ I D + L L N + + A++ +T + S+
Sbjct: 114 LTGLTLFNNQIT------DIDPLKNLTNLNRLELSSNT---ISDISALSGLTSLQQLSFG 164
Query: 350 GDILELMA--------GLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNL 401
+ +L LD+S+N+++ S + L N+ L ++N +S P L
Sbjct: 165 NQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGIL 220
Query: 402 KMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIP 443
++ L L+ N+L L L +L+ D++ N +S P
Sbjct: 221 TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP 260
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 4e-09
Identities = 22/119 (18%), Positives = 42/119 (35%), Gaps = 6/119 (5%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
L L N ++ P + L + L +N +S S +NL I L HN+++
Sbjct: 314 LTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLT 369
Query: 419 PPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGPAINKGCTNLPEL 477
P L L ++ ++ + + + + + L PA + E
Sbjct: 370 P--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEP 426
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 6e-24
Identities = 49/291 (16%), Positives = 99/291 (34%), Gaps = 39/291 (13%)
Query: 9 GLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNN 68
LD+ N + ++ L L + + N P + + L L +S N
Sbjct: 53 DTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 69 FAGELSQSLVINCF-SLEWLDLSNNNFVGQIFPNYM--NLTRLWALYLYNNNF-SGKIKD 124
+ L +L+ L + N + L ++ + L N S I++
Sbjct: 112 L-----KELPEKMPKTLQELRVHENEI--TKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 164
Query: 125 GLLRS-TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQ-FNNLASLQI 182
G + +L + I++ ++ IP G +L L + N + + L +L
Sbjct: 165 GAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKIT-KVDAASLKGLNNLAK 220
Query: 183 LNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINE----- 236
L +S N++S +L N + L+L NN L +P ++ + L N
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISAIG 279
Query: 237 ------------HSNLRTLLLRGNYLQGPI--PHQLCHLRKLGIMDISHNR 273
++ + L N +Q P + + + + +
Sbjct: 280 SNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 8e-22
Identities = 50/242 (20%), Positives = 95/242 (39%), Gaps = 26/242 (10%)
Query: 49 IPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPN-YMNLTR 107
+P + LLD+ +N E+ N +L L L NN +I P + L +
Sbjct: 46 VPKDLPP--DTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVK 101
Query: 108 LWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLL- 166
L LYL N ++ + + ++ L L + N ++ S + + ++ + N L
Sbjct: 102 LERLYLSKNQLK-ELPEKMPKT--LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158
Query: 167 EGNIPVQ-FNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRG- 224
I F + L + I++ N+ + I S+ L+L N + + +G
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTNI--TTIPQGLPPSLTELHLDGNKI-TKVDAASLKGL 215
Query: 225 SALETLDLRINE-----------HSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNR 273
+ L L L N +LR L L N L +P L + + ++ + +N
Sbjct: 216 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNN 274
Query: 274 LN 275
++
Sbjct: 275 IS 276
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 2e-20
Identities = 67/345 (19%), Positives = 113/345 (32%), Gaps = 81/345 (23%)
Query: 83 SLEWLDLSNNNFVGQIFPNYM-NLTRLWALYLYNNNFSGKIKDGLLRS-TELMVLDISNN 140
LDL NN +I NL L L L NN S KI G +L L +S N
Sbjct: 53 DTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKN 110
Query: 141 RLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMIST--- 197
+L +P TLQ L + +N + FN L + ++ + N L S I
Sbjct: 111 QLK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167
Query: 198 LNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQ 257
+ + ++ + + + +IP +L L L GN +
Sbjct: 168 QGMKKLSYIRIADTNIT-TIPQGLP---------------PSLTELHLDGNKITKVDAAS 211
Query: 258 LCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNS 317
L L L + +S N + + + N + + LR
Sbjct: 212 LKGLNNLAKLGLSFNSI-----SAVDNGSLANTPH---------LR-------------- 243
Query: 318 TVELLLDGNDGRML-GALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTG------DI 370
EL L+ N + G L ++ + L NN ++
Sbjct: 244 --ELHLNNNKLVKVPGGLADHKYIQV----------------VYLHNNNISAIGSNDFCP 285
Query: 371 PSEIGDLQNIHGLNLSHNFLSGSI--PESFSNLKMIESLDLSHNK 413
P + G++L N + P +F + + ++ L + K
Sbjct: 286 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 4e-18
Identities = 64/330 (19%), Positives = 116/330 (35%), Gaps = 62/330 (18%)
Query: 134 VLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGS 193
V+ S+ L +P +L + N + F NL +L L + N + S
Sbjct: 35 VVQCSDLGLE-KVPK--DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI--S 89
Query: 194 MIST---LNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINE-----------HSN 239
IS L +E LYL N L +P + L+ L + NE +
Sbjct: 90 KISPGAFAPLVKLERLYLSKNQL-KELPEKMPKT--LQELRVHENEITKVRKSVFNGLNQ 146
Query: 240 LRTLLLRGNYLQ-GPIPHQ-LCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYG 297
+ + L N L+ I + ++KL + I+ + +IP L + +L G
Sbjct: 147 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ----GLPPSLTELHLDG 201
Query: 298 FDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRML--GALVAVNFMTKNRYESYKGDILEL 355
I +D A + N +L L N + G+L + +
Sbjct: 202 NKIT---KVDAASLKGLNNLA-KLGLSFNSISAVDNGSLANTPHLRE------------- 244
Query: 356 MAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPES-------FSNLKMIESLD 408
L L+NN+L +P + D + I + L +N +S +I + + +
Sbjct: 245 ---LHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVS 299
Query: 409 LSHNKLN-GQIPPQL-TELHSLSTFDVSYN 436
L N + +I P ++ + +
Sbjct: 300 LFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 1e-12
Identities = 46/251 (18%), Positives = 85/251 (33%), Gaps = 38/251 (15%)
Query: 201 SSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINE-----------HSNLRTLLLRGNY 249
L LQNN + F L TL L N+ L L L N
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 250 LQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDA 309
L+ L++L + N + + +F+ + ++ + L
Sbjct: 112 LKELPEKMPKTLQEL---RVHENEIT-----KVRKSVFNGLNQ--------MIVVELGT- 154
Query: 310 YVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGD 369
N ++ + + L + + + + + L L N++T
Sbjct: 155 ------NPLKSSGIENGAFQGMKKLSYIR-IADTNITTIPQGLPPSLTELHLDGNKIT-K 206
Query: 370 IPSEI-GDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSL 428
+ + L N+ L LS N +S S +N + L L++NKL ++P L + +
Sbjct: 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI 265
Query: 429 STFDVSYNNLS 439
+ NN+S
Sbjct: 266 QVVYLHNNNIS 276
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 8e-07
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
+ S+ L +P ++ + L+L +N ++ F NLK + +L L +NK++ +I
Sbjct: 36 VQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KI 91
Query: 419 PPQ-LTELHSLSTFDVSYNNLS 439
P L L +S N L
Sbjct: 92 SPGAFAPLVKLERLYLSKNQLK 113
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 103 bits (257), Expect = 3e-23
Identities = 65/370 (17%), Positives = 125/370 (33%), Gaps = 73/370 (19%)
Query: 83 SLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRS-TELMVLDISNNR 141
+ + + L + N+ K+ LL S ++ +L++++ +
Sbjct: 28 VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQ 86
Query: 142 LSGHIPSWM-GNFSTLQILSMSKNLLEGNIPVQ-FNNLASLQILNISENNLSGSMISTL- 198
+ I ++ T+Q L M N + +P F N+ L +L + N+LS
Sbjct: 87 IE-EIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH 144
Query: 199 NLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRINE--------HSNLRTLLLRGNY 249
N + L + NN L I + F+ ++L+ L L N +L + N
Sbjct: 145 NTPKLTTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNL 203
Query: 250 LQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDA 309
L L + +D SHN +N + + +
Sbjct: 204 LS-----TLAIPIAVEELDASHNSINV-----VRGPVNVELT------------------ 235
Query: 310 YVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGD 369
L L N+ L+ + + +DLS NEL
Sbjct: 236 ----------ILKLQHNNLTDTAWLLNYPGLVE----------------VDLSYNELEKI 269
Query: 370 IPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLS 429
+ +Q + L +S+N L ++ + ++ LDLSHN L + + L
Sbjct: 270 MYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE 327
Query: 430 TFDVSYNNLS 439
+ +N++
Sbjct: 328 NLYLDHNSIV 337
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 9e-23
Identities = 80/388 (20%), Positives = 140/388 (36%), Gaps = 73/388 (18%)
Query: 39 NISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQI 98
+I + + + +++ ++ +L +L+ + +E L+L++ +I
Sbjct: 33 HIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-EI 90
Query: 99 FPN-YMNLTRLWALYLYNNNFSGKIKDGLLRS-TELMVLDISNNRLSGHIPSWM-GNFST 155
+ + LY+ N + + ++ L VL + N LS +P + N
Sbjct: 91 DTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPK 148
Query: 156 LQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGG 215
L LSMS N LE F SLQ L +S N L + + + S+ H + N L
Sbjct: 149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL--THVDLSLIPSLFHANVSYNLL-- 204
Query: 216 SIPNTFFRGSALETLDLRINE--------HSNLRTLLLRGNYLQGPIPHQLCHLRKLGIM 267
+T A+E LD N + L L L+ N L L + L +
Sbjct: 205 ---STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEV 259
Query: 268 DISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGND 327
D+S+N L I F +++ L L + N
Sbjct: 260 DLSYNELE-KIMYHP----FVKMQR---------LE----------------RLYISNN- 288
Query: 328 GRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSH 387
LVA+N + + + LDLS+N L + + L L H
Sbjct: 289 -----RLVALNLYGQP---------IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDH 333
Query: 388 NFLSGSIPESFSNLKMIESLDLSHNKLN 415
N + ++ S +++L LSHN +
Sbjct: 334 NSIV-TLK--LSTHHTLKNLTLSHNDWD 358
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 96.5 bits (240), Expect = 3e-21
Identities = 70/388 (18%), Positives = 133/388 (34%), Gaps = 33/388 (8%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSI-GKMQGLRLLDVSSNN 68
L L + RN S LP+ + PKL +++S N+ E I L+ L +SSN
Sbjct: 125 LTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNR 182
Query: 69 FAGELSQSLVINCF-SLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLL 127
+ ++ SL ++S N + + L +N+ + ++ +
Sbjct: 183 L-----THVDLSLIPSLFHANVSYNLL--STLAIPIAVEEL---DASHNSIN-VVRGPVN 231
Query: 128 RSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISE 187
L +L + +N L+ +W+ N+ L + +S N LE + F + L+ L IS
Sbjct: 232 VE--LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287
Query: 188 NNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINE--------HSN 239
N L + + +++ L L +N L + + LE L L N H
Sbjct: 288 NRLVALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSIVTLKLSTHHT 346
Query: 240 LRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFD 299
L+ L L N L R + + + I + + L + +
Sbjct: 347 LKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRL 404
Query: 300 IVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGL 359
+ Y+ V + + +L + + L
Sbjct: 405 L---QYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNEL 461
Query: 360 DLSNNELTGDIPSEIGDLQNIHGLNLSH 387
+LT + + LQ +H ++
Sbjct: 462 RAEVQQLTNEQIQQEQLLQGLHAEIDTN 489
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 68.0 bits (166), Expect = 3e-12
Identities = 37/205 (18%), Positives = 68/205 (33%), Gaps = 40/205 (19%)
Query: 9 GLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNN 68
L ++S N S++ + LD S N+
Sbjct: 193 SLFHANVSYNLL------------------------------STLAIPIAVEELDASHNS 222
Query: 69 FAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLR 128
+ + L L L +NN +N L + L N + ++
Sbjct: 223 IN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK 276
Query: 129 STELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISEN 188
L L ISNNRL + + TL++L +S N L ++ L+ L + N
Sbjct: 277 MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 334
Query: 189 NLSGSMISTLNLSSVEHLYLQNNAL 213
++ + ++++L L +N
Sbjct: 335 SI--VTLKLSTHHTLKNLTLSHNDW 357
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 99.8 bits (249), Expect = 1e-22
Identities = 66/370 (17%), Positives = 136/370 (36%), Gaps = 29/370 (7%)
Query: 83 SLEWLDLSNNNFVGQIFPN-YMNLTRLWALYLYNNNFSGKIKDGLLRS-TELMVLDISNN 140
+ ++DLS N+ ++ + L L L + I++ R + L++L + N
Sbjct: 31 HVNYVDLSLNSI-AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 141 RLSGHIPSWM-GNFSTLQILSMSKNLL-EGNIPV-QFNNLASLQILNISENNLSGSMIST 197
+ + + + L++L++++ L + F L SL++L + +NN+ ++
Sbjct: 90 QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148
Query: 198 L--NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIP 255
N+ L L N + SI + + S++ + +L
Sbjct: 149 FFLNMRRFHVLDLTFNKVK-SICEEDLLN--FQGKHFTLLRLSSITLQDMNEYWLGWEKC 205
Query: 256 HQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYY 315
+ +D+S N S+ F + + + + ++ +
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMA----KRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261
Query: 316 NSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDI---LELMAGLDLSNNELTGDIPS 372
G + + ++K++ + + + L L+ NE+ I
Sbjct: 262 KDPDNFTFKGLEASGVKTC----DLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDD 316
Query: 373 EIGD-LQNIHGLNLSHNFLSGSIPE-SFSNLKMIESLDLSHNKLNGQIPPQL-TELHSLS 429
L ++ LNLS NFL SI F NL +E LDLS+N + + Q L +L
Sbjct: 317 NAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLK 374
Query: 430 TFDVSYNNLS 439
+ N L
Sbjct: 375 ELALDTNQLK 384
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 92.5 bits (230), Expect = 3e-20
Identities = 77/426 (18%), Positives = 146/426 (34%), Gaps = 75/426 (17%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSI-GKMQGLRLLDVSSNN 68
++ +D+S NS + +L + L L ++ + + + I ++ + L +L + N
Sbjct: 32 VNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90
Query: 69 FAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYM--NLTRLWALYLYNNNFSGKIKDGL 126
F +L +LE L L+ N G + LT L L L +NN
Sbjct: 91 FL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149
Query: 127 LRS-TELMVLDISNNRLSGHIPSWMGNFSTL-------------QILSMSKNLLEGNIPV 172
+ VLD++ N++ I + + M++ L
Sbjct: 150 FLNMRRFHVLDLTFNKVK-SICE--EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206
Query: 173 QFNNLASLQILNISENNL----SGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALE 228
S+ L++S N + + + ++ L L N+ GS +
Sbjct: 207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS-SFGHTNFKDPD 265
Query: 229 TLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFS 288
+ E S ++T L + + + H L + ++ N +N I F
Sbjct: 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNA----FW 320
Query: 289 RVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESY 348
+ + L +L L N LG++ + F
Sbjct: 321 GLTH---------LL----------------KLNLSQNF---LGSIDSRMF--------- 343
Query: 349 KGDILELMAGLDLSNNELTGDIPSEIGD-LQNIHGLNLSHNFLSGSIPES-FSNLKMIES 406
+ L+ + LDLS N + + + L N+ L L N L S+P+ F L ++
Sbjct: 344 --ENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQK 399
Query: 407 LDLSHN 412
+ L N
Sbjct: 400 IWLHTN 405
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 85.2 bits (211), Expect = 7e-18
Identities = 67/336 (19%), Positives = 121/336 (36%), Gaps = 31/336 (9%)
Query: 130 TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQ-FNNLASLQILNISEN 188
+ +D+S N ++ + LQ L + + I F L+SL IL + N
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 189 NLSGSMISTL-NLSSVEHLYLQNNAL-GGSIPNTFFRG-SALETLDLRINE--------- 236
L+++E L L L G + FF+ ++LE L LR N
Sbjct: 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149
Query: 237 ---HSNLRTLLLRGNYLQGPIPH------QLCHLRKLGIMDISHNRLNGSIPACITNMLF 287
L L N ++ I Q H L + I+ +N
Sbjct: 150 FLNMRRFHVLDLTFNKVKS-ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP 208
Query: 288 SRVEN-GYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYE 346
+ + L + + + + ++ L+ N M + NF
Sbjct: 209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF-KDPDNF 267
Query: 347 SYKGDILELMAGLDLSNNELTGDIPSEI-GDLQNIHGLNLSHNFLSGSIPE-SFSNLKMI 404
++KG + DLS +++ + + ++ L L+ N ++ I + +F L +
Sbjct: 268 TFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHL 325
Query: 405 ESLDLSHNKLNGQIPPQL-TELHSLSTFDVSYNNLS 439
L+LS N L G I ++ L L D+SYN++
Sbjct: 326 LKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR 360
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 4e-10
Identities = 44/213 (20%), Positives = 78/213 (36%), Gaps = 26/213 (12%)
Query: 7 QHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSS 66
+ +LD+S N F + + + ++ + N + D +
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS----NSYNMGSSFGHTNFKDPDN 266
Query: 67 NNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYM--NLTRLWALYLYNNNFSGKIKD 124
F G + ++ DLS + + + T L L L N + KI D
Sbjct: 267 FTFKG-------LEASGVKTCDLSKSKI--FALLKSVFSHFTDLEQLTLAQNEIN-KIDD 316
Query: 125 GLLRS-TELMVLDISNNRLSGHIPSWMGNF---STLQILSMSKNLLEGNIPVQ-FNNLAS 179
T L+ L++S N L I S F L++L +S N + + Q F L +
Sbjct: 317 NAFWGLTHLLKLNLSQNFLG-SIDS--RMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPN 372
Query: 180 LQILNISENNLSGSMISTL-NLSSVEHLYLQNN 211
L+ L + N L L+S++ ++L N
Sbjct: 373 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 3e-22
Identities = 44/255 (17%), Positives = 87/255 (34%), Gaps = 25/255 (9%)
Query: 5 SAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDV 64
+ Q G +L++ + P L L +M I +P ++ + GL L +
Sbjct: 78 ATQPGRVALELRSVPLP-QFPDQAF-RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTL 134
Query: 65 SSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQI---------FPNYMNLTRLWALYLYN 115
+ N L S+ + L L + + ++ + L L +L L
Sbjct: 135 ARNPLR-ALPASIA-SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW 192
Query: 116 NNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFN 175
+ + L L I N+ LS + + + L+ L + N P F
Sbjct: 193 TGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFG 250
Query: 176 NLASLQILNISENNLSGSMISTL-----NLSSVEHLYLQNNALGGSIPNTFFRGSALETL 230
A L+ L + + + + TL L+ +E L L+ +P+ + A +
Sbjct: 251 GRAPLKRLILKDCS----NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII 306
Query: 231 DLRINEHSNLRTLLL 245
+ + + L
Sbjct: 307 LVPPHLQAQLDQHRP 321
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 93.5 bits (233), Expect = 4e-21
Identities = 50/289 (17%), Positives = 97/289 (33%), Gaps = 38/289 (13%)
Query: 1 FQLTSAQHGLHSLDISRNSFSG--KLPQNMGI-VLPKLVYMNISKNSFEGNIPSSIGKMQ 57
+ Q ++ I + + P V + + P ++
Sbjct: 46 WHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLS 104
Query: 58 GLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYM-NLTRLWALYLYNN 116
L+ + + + EL ++ LE L L+ N + P + +L RL L +
Sbjct: 105 HLQHMTIDAAGLM-ELPDTMQ-QFAGLETLTLARNPL--RALPASIASLNRLRELSIRAC 160
Query: 117 NFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNN 176
++ + L + LQ L + + ++P N
Sbjct: 161 PELTELPEPLASTD---------------ASGEHQGLVNLQSLRLEWTGIR-SLPASIAN 204
Query: 177 LASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINE 236
L +L+ L I + LS + +L +E L L+ + P F + L+ L L+ +
Sbjct: 205 LQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK--D 262
Query: 237 HSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNM 285
SNL TL P + L +L +D+ +P+ I +
Sbjct: 263 CSNLLTL-----------PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 1e-15
Identities = 37/257 (14%), Positives = 73/257 (28%), Gaps = 53/257 (20%)
Query: 74 SQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKD--------- 124
S + E L + + R + + + + +
Sbjct: 4 SHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETR 63
Query: 125 ------------GLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPV 172
+ L++ + L P S LQ +++ L +P
Sbjct: 64 TGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPD 121
Query: 173 QFNNLASLQILNISENNLSGSMISTL-----NLSSVEHLYLQNNALGGSIPNTFFRGSA- 226
A L+ L ++ N L L +L+ + L ++ +P A
Sbjct: 122 TMQQFAGLETLTLARNPL-----RALPASIASLNRLRELSIRACPELTELPEPLASTDAS 176
Query: 227 --------LETLDLR----------INEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMD 268
L++L L I NL++L +R + L + + HL KL +D
Sbjct: 177 GEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELD 235
Query: 269 ISHNRLNGSIPACITNM 285
+ + P
Sbjct: 236 LRGCTALRNYPPIFGGR 252
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 6e-13
Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
L+L + L P + L ++ + + L +P++ +E+L L+ N L +
Sbjct: 86 LELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-AL 142
Query: 419 PPQLTELHSLSTFDVSYNNLSGPIPD 444
P + L+ L + +P+
Sbjct: 143 PASIASLNRLRELSIRACPELTELPE 168
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 5e-11
Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 1/86 (1%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
L + N+ L+ + I L + L+L + P F ++ L L +
Sbjct: 211 LKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL 269
Query: 419 PPQLTELHSLSTFDVSYNNLSGPIPD 444
P + L L D+ +P
Sbjct: 270 PLDIHRLTQLEKLDLRGCVNLSRLPS 295
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 3e-10
Identities = 16/81 (19%), Positives = 28/81 (34%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
LDL + P G + L L ++P L +E LDL ++
Sbjct: 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293
Query: 419 PPQLTELHSLSTFDVSYNNLS 439
P + +L + V + +
Sbjct: 294 PSLIAQLPANCIILVPPHLQA 314
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 2e-09
Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 11/90 (12%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMI---------ESLDL 409
L L+ N L +P+ I L + L++ +PE ++ +SL L
Sbjct: 132 LTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190
Query: 410 SHNKLNGQIPPQLTELHSLSTFDVSYNNLS 439
+ +P + L +L + + + LS
Sbjct: 191 EWTGIR-SLPASIANLQNLKSLKIRNSPLS 219
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 5e-07
Identities = 10/68 (14%), Positives = 22/68 (32%), Gaps = 2/68 (2%)
Query: 359 LDLSN-NELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 417
L L + + L +P +I L + L+L +P + L + + +
Sbjct: 258 LILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316
Query: 418 IPPQLTEL 425
+
Sbjct: 317 DQHRPVAR 324
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 96.6 bits (241), Expect = 3e-22
Identities = 50/290 (17%), Positives = 98/290 (33%), Gaps = 38/290 (13%)
Query: 9 GLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNN 68
LD+ N S +L ++ L L + + N + ++ L+ L +S N+
Sbjct: 55 DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113
Query: 69 FAGELSQSLVINCF-SLEWLDLSNNNFVGQIFPNYM--NLTRLWALYLYNNNF-SGKIKD 124
+ N SL L + +N + P + L + + + N + +
Sbjct: 114 L-----VEIPPNLPSSLVELRIHDNRI--RKVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166
Query: 125 GLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQ-FNNLASLQIL 183
G +L L IS +L+ IP TL L + N ++ I ++ + L L
Sbjct: 167 GAFDGLKLNYLRISEAKLT-GIPK--DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRL 222
Query: 184 NISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRIN------- 235
+ N + +L L ++ L+L NN L +P L+ + L N
Sbjct: 223 GLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGV 281
Query: 236 ----------EHSNLRTLLLRGNYLQGPI--PHQLCHLRKLGIMDISHNR 273
+ + + L N + P + + + +
Sbjct: 282 NDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 9e-21
Identities = 61/247 (24%), Positives = 95/247 (38%), Gaps = 28/247 (11%)
Query: 49 IPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPN-YMNLTR 107
+P I LLD+ +N+ + EL + L L L NN +I + L +
Sbjct: 48 VPKEISP--DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRK 103
Query: 108 LWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLE 167
L LY+ N+ +I L S L+ L I +NR+ + + M N LE
Sbjct: 104 LQKLYISKNHLV-EIPPNLPSS--LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE 160
Query: 168 GNI--PVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRG- 224
+ P F+ L L L ISE L + I ++ L+L +N + +I
Sbjct: 161 NSGFEPGAFDGL-KLNYLRISEAKL--TGIPKDLPETLNELHLDHNKI-QAIELEDLLRY 216
Query: 225 SALETLDLRINE-----------HSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNR 273
S L L L N+ LR L L N L +P L L+ L ++ + N
Sbjct: 217 SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNN 275
Query: 274 LNGSIPA 280
+ +
Sbjct: 276 IT-KVGV 281
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 82.8 bits (205), Expect = 2e-17
Identities = 68/344 (19%), Positives = 111/344 (32%), Gaps = 80/344 (23%)
Query: 83 SLEWLDLSNNNFVGQIFPN-YMNLTRLWALYLYNNNFSGKIKDGLLRS-TELMVLDISNN 140
LDL NN+ ++ + + L L+AL L NN S KI + +L L IS N
Sbjct: 55 DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKN 112
Query: 141 RLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMIS--TL 198
L IP S+L L + N + F+ L ++ + + N L S
Sbjct: 113 HLV-EIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169
Query: 199 NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQL 258
+ + +L + L IP L L L N+ + L
Sbjct: 170 DGLKLNYLRISEAKLT-GIPKDLP--ETLNELHLDHNKIQAIELEDLLR----------- 215
Query: 259 CHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNST 318
KL + + HN++ I N S + LR
Sbjct: 216 --YSKLYRLGLGHNQI-----RMIENGSLSFLPT---------LR--------------- 244
Query: 319 VELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEI---- 374
EL LD N L V + L+L+ + L N +T +
Sbjct: 245 -ELHLDNN------KLSRVPAGLPD---------LKLLQVVYLHTNNIT-KVGVNDFCPV 287
Query: 375 ---GDLQNIHGLNLSHNFLSGSI--PESFSNLKMIESLDLSHNK 413
+G++L +N + P +F + ++ + K
Sbjct: 288 GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 1e-16
Identities = 60/325 (18%), Positives = 106/325 (32%), Gaps = 58/325 (17%)
Query: 131 ELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNL 190
L V+ S+ L +P + +L + N + F L L L + N +
Sbjct: 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90
Query: 191 SGSMIST---LNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINE----------- 236
S I L ++ LY+ N L IP L L + N
Sbjct: 91 --SKIHEKAFSPLRKLQKLYISKNHL-VEIPPNLPSS--LVELRIHDNRIRKVPKGVFSG 145
Query: 237 HSNLRTLLLRGNYLQ-GPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYL 295
N+ + + GN L+ KL + IS +L IP L + +L
Sbjct: 146 LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPK----DLPETLNELHL 200
Query: 296 YGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILEL 355
I ++ + Y L L N RM+ L
Sbjct: 201 DHNKI---QAIELEDLLRYSKLY-RLGLGHNQIRMIENGSLSF--------------LPT 242
Query: 356 MAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKM------IESLDL 409
+ L L NN+L+ +P+ + DL+ + + L N ++ F + + L
Sbjct: 243 LRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISL 301
Query: 410 SHNKL-NGQIPPQ----LTELHSLS 429
+N + ++ P +T+ ++
Sbjct: 302 FNNPVPYWEVQPATFRCVTDRLAIQ 326
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 7e-07
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
LDL NN+++ + LQ+++ L L +N +S ++FS L+ ++ L +S N L +I
Sbjct: 59 LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EI 117
Query: 419 PPQLTELHSLSTFDVSYNNLS 439
PP L SL + N +
Sbjct: 118 PPNL--PSSLVELRIHDNRIR 136
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 9e-07
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
+ S+ L +P EI + L+L +N +S + F L+ + +L L +NK++ +I
Sbjct: 38 VQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KI 93
Query: 419 PPQ-LTELHSLSTFDVSYNNLS 439
+ + L L +S N+L
Sbjct: 94 HEKAFSPLRKLQKLYISKNHLV 115
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKL-NGQ 417
L +S N L +IP + ++ L + N + FS L+ + +++ N L N
Sbjct: 107 LYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG 163
Query: 418 IPPQLTELHSLSTFDVSYNNLS 439
P + L+ +S L+
Sbjct: 164 FEPGAFDGLKLNYLRISEAKLT 185
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 48/242 (19%), Positives = 70/242 (28%), Gaps = 68/242 (28%)
Query: 201 SSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLC 259
L LQNN + + F+G L L L N+ S +
Sbjct: 54 PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSP------------ 100
Query: 260 HLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTV 319
LRKL + IS N L IP L S +
Sbjct: 101 -LRKLQKLYISKNHLV-EIPP----NLPSSLV---------------------------- 126
Query: 320 ELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGD-IPSEIGDLQ 378
EL + N R + V L M +++ N L D
Sbjct: 127 ELRIHDNRIRKVPKGVFSG--------------LRNMNCIEMGGNPLENSGFEPGAFDGL 172
Query: 379 NIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQ-LTELHSLSTFDVSYNN 437
++ L +S L+G + L L L HNK+ I + L L + +N
Sbjct: 173 KLNYLRISEAKLTGIPKDLPETL---NELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQ 228
Query: 438 LS 439
+
Sbjct: 229 IR 230
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 92.4 bits (230), Expect = 8e-21
Identities = 55/254 (21%), Positives = 101/254 (39%), Gaps = 23/254 (9%)
Query: 12 SLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFA- 70
+ + + +P + + + N + K+ L L +SSN +
Sbjct: 11 EIRCNSKGLT-SVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66
Query: 71 GELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRS- 129
SL++LDLS N V + N++ L +L L ++N + + S
Sbjct: 67 KGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125
Query: 130 TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKN-LLEGNIPVQFNNLASLQILNISEN 188
L+ LDIS+ S+L++L M+ N E +P F L +L L++S+
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185
Query: 189 NLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRINE---------- 236
L + +LSS++ L + +N S+ ++ ++L+ LD +N
Sbjct: 186 QLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244
Query: 237 --HSNLRTLLLRGN 248
S+L L L N
Sbjct: 245 HFPSSLAFLNLTQN 258
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 7e-20
Identities = 47/232 (20%), Positives = 79/232 (34%), Gaps = 24/232 (10%)
Query: 49 IPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYM--NLT 106
+P+ I L++ SN L + L L LS+N + + T
Sbjct: 22 VPTGIPS--SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78
Query: 107 RLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIP-SWMGNFSTLQILSMSKNL 165
L L L N + L +L LD ++ L S + L L +S
Sbjct: 79 SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137
Query: 166 LEGNIPVQ-FNNLASLQILNISENNLSGSMISTL--NLSSVEHLYLQNNALGGSIPNTFF 222
FN L+SL++L ++ N+ + + + L ++ L L L + T F
Sbjct: 138 TR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAF 195
Query: 223 RGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRL 274
S+L+ L + N L L ++D S N +
Sbjct: 196 NSL------------SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 2e-19
Identities = 53/212 (25%), Positives = 90/212 (42%), Gaps = 9/212 (4%)
Query: 8 HGLHSLDISRNSFSGK-LPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSS 66
L L +S N S K L Y+++S N + S+ ++ L LD
Sbjct: 52 TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQH 110
Query: 67 NNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYM--NLTRLWALYLYNNNFSGKIKD 124
+N S+ ++ +L +LD+S+ + ++ N + L+ L L + N+F
Sbjct: 111 SNLKQMSEFSVFLSLRNLIYLDISHTHT--RVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168
Query: 125 GLLRS-TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQIL 183
+ L LD+S +L P+ + S+LQ+L+MS N + L SLQ+L
Sbjct: 169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228
Query: 184 NISENNLSGSMISTLN--LSSVEHLYLQNNAL 213
+ S N++ S L SS+ L L N
Sbjct: 229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 3e-18
Identities = 59/311 (18%), Positives = 107/311 (34%), Gaps = 67/311 (21%)
Query: 135 LDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSM 194
+ ++ L+ +P+ G S+ L + N L+ F+ L L L++S N LS
Sbjct: 12 IRCNSKGLT-SVPT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68
Query: 195 IST---LNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQ 251
+ +S+++L L N + ++ + F LE LD + + +
Sbjct: 69 CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQM----------- 116
Query: 252 GPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYV 311
LR L +DISH N +F+ + + L
Sbjct: 117 -SEFSVFLSLRNLIYLDISHTHTRV-----AFNGIFNGLSS---------LE-------- 153
Query: 312 SNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIP 371
L + GN + F L + LDLS +L +
Sbjct: 154 --------VLKMAGN--SFQENFLPDIFTE-----------LRNLTFLDLSQCQLE-QLS 191
Query: 372 SEI-GDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTE--LHSL 428
L ++ LN+SHN + L ++ LD S N + Q + SL
Sbjct: 192 PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSL 250
Query: 429 STFDVSYNNLS 439
+ +++ N+ +
Sbjct: 251 AFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 2e-17
Identities = 47/205 (22%), Positives = 73/205 (35%), Gaps = 24/205 (11%)
Query: 83 SLEWLDLSNNNFV---GQIFPNYMNLTRLWALYLYNNNFSGK-IKDGLLRS-TELMVLDI 137
S L+L +N +F LT+L L +N S K T L LD+
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKL---SLSSNGLSFKGCCSQSDFGTTSLKYLDL 85
Query: 138 SNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQ-FNNLASLQILNISENNLSGSMIS 196
S N + + S L+ L + L+ F +L +L L+IS + +
Sbjct: 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 144
Query: 197 TL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIP 255
LSS+E L + N+ + F NL L L L+ P
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTEL------------RNLTFLDLSQCQLEQLSP 192
Query: 256 HQLCHLRKLGIMDISHNRLNGSIPA 280
L L ++++SHN S+
Sbjct: 193 TAFNSLSSLQVLNMSHNNFF-SLDT 216
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 90.6 bits (225), Expect = 1e-19
Identities = 56/240 (23%), Positives = 91/240 (37%), Gaps = 24/240 (10%)
Query: 49 IPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPN-YMNLTR 107
+P I R L++ NN + + LE L L N+ + QI + L
Sbjct: 69 VPQGI--PSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLAS 124
Query: 108 LWALYLYNNNFSGKIKDGLLRS-TELMVLDISNNRLSGHIPS-WMGNFSTLQILSMSKNL 165
L L L++N + I G ++L L + NN + IPS +L L + +
Sbjct: 125 LNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELK 182
Query: 166 LEGNIPVQ-FNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFR 223
I F L +L+ LN+ N+ + L L +E L + N P +F
Sbjct: 183 KLEYISEGAFEGLFNLKYLNLGMCNIK--DMPNLTPLVGLEELEMSGNHFPEIRPGSFHG 240
Query: 224 GSALETLDLRINE-----------HSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHN 272
S+L+ L + ++ ++L L L N L LR L + + HN
Sbjct: 241 LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 85.6 bits (212), Expect = 6e-18
Identities = 56/312 (17%), Positives = 109/312 (34%), Gaps = 64/312 (20%)
Query: 129 STELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISEN 188
S + + + LS +P + S + L++ +N ++ F +L L++L + N
Sbjct: 53 SNQFSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109
Query: 189 NLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRG 247
++ + L+S+ L L +N L IP+ F S LR L LR
Sbjct: 110 SIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYL------------SKLRELWLRN 156
Query: 248 NYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLD 307
N ++ + + L +D+ + I F + N L+
Sbjct: 157 NPIESIPSYAFNRVPSLMRLDLGELKKLEYISE----GAFEGLFN---------LK---- 199
Query: 308 DAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELT 367
L L + + + L + + + L++S N
Sbjct: 200 ------------YLNLGMCNIKDMPNLTPLVGLEE----------------LEMSGNHFP 231
Query: 368 GDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQ-LTELH 426
P L ++ L + ++ +S +F L + L+L+HN L+ +P T L
Sbjct: 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLR 290
Query: 427 SLSTFDVSYNNL 438
L + +N
Sbjct: 291 YLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 83.3 bits (206), Expect = 3e-17
Identities = 52/259 (20%), Positives = 99/259 (38%), Gaps = 28/259 (10%)
Query: 7 QHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSS 66
+ + +R S ++PQ + Y+N+ +N+ + + + L +L +
Sbjct: 53 SNQFSKVVCTRRGLS-EVPQG---IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGR 108
Query: 67 NNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYM--NLTRLWALYLYNNNFSGKIKD 124
N+ ++ SL L+L +N + P+ L++L L+L NN I
Sbjct: 109 NSIR-QIEVGAFNGLASLNTLELFDNWL--TVIPSGAFEYLSKLRELWLRNNPIE-SIPS 164
Query: 125 GLLRS-TELMVLDIS-NNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQI 182
LM LD+ +L L+ L++ ++ ++P L L+
Sbjct: 165 YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEE 222
Query: 183 LNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRIN----- 235
L +S N+ + LSS++ L++ N+ + I F G ++L L+L N
Sbjct: 223 LEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV-SLIERNAFDGLASLVELNLAHNNLSSL 281
Query: 236 ------EHSNLRTLLLRGN 248
L L L N
Sbjct: 282 PHDLFTPLRYLVELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 2e-16
Identities = 44/202 (21%), Positives = 80/202 (39%), Gaps = 33/202 (16%)
Query: 83 SLEWLDLSNNNFVGQIFPN-YMNLTRLWALYLYNNNFSGKIKDGLLRS-TELMVLDISNN 140
+ +L+L NN I + + +L L L L N+ +I+ G L L++ +N
Sbjct: 76 NTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDN 133
Query: 141 RLSGHIPS-WMGNFSTLQILSMSKNLLEGNIPVQ-FNNLASLQILNISENNLSGSMISTL 198
L+ IPS S L+ L + N +E +IP FN + SL L++ E + +
Sbjct: 134 WLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELK----KLEYI 187
Query: 199 ------NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQG 252
L ++++L L + +PN L L + GN+
Sbjct: 188 SEGAFEGLFNLKYLNLGMCNIK-DMPN--LTPL------------VGLEELEMSGNHFPE 232
Query: 253 PIPHQLCHLRKLGIMDISHNRL 274
P L L + + ++++
Sbjct: 233 IRPGSFHGLSSLKKLWVMNSQV 254
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 5e-15
Identities = 45/185 (24%), Positives = 82/185 (44%), Gaps = 11/185 (5%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSI-GKMQGLRLLDVSSNN 68
L++L++ N + +P L KL + + N E +IPS ++ L LD+
Sbjct: 125 LNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELK 182
Query: 69 FAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLR 128
+S+ F+L++L+L N + PN L L L + N+F +I+ G
Sbjct: 183 KLEYISEGAFEGLFNLKYLNLGMCNI--KDMPNLTPLVGLEELEMSGNHFP-EIRPGSFH 239
Query: 129 S-TELMVLDISNNRLSGHIPSWM-GNFSTLQILSMSKNLLEGNIPVQ-FNNLASLQILNI 185
+ L L + N+++S I ++L L+++ N L ++P F L L L++
Sbjct: 240 GLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHL 297
Query: 186 SENNL 190
N
Sbjct: 298 HHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 1e-09
Identities = 42/243 (17%), Positives = 85/243 (34%), Gaps = 42/243 (17%)
Query: 201 SSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCH 260
S+ +L L N + +TF LE L L N +
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE-------------VGAFNG 121
Query: 261 LRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVE 320
L L +++ N L + + +G + ++L + N
Sbjct: 122 LASLNTLELFDNWL-------------TVIPSGAFEYLSKLRELWLRN-------NPIES 161
Query: 321 LLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGL---DLSNNELTGDIPSEIGDL 377
+ + + +L+ ++ + E E + L +L + D+P+ + L
Sbjct: 162 IPSYAFNR--VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPL 217
Query: 378 QNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQ-LTELHSLSTFDVSYN 436
+ L +S N P SF L ++ L + +++++ I L SL ++++N
Sbjct: 218 VGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHN 276
Query: 437 NLS 439
NLS
Sbjct: 277 NLS 279
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 8e-07
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
+ + L+ ++P I N LNL N + ++F +L +E L L N + QI
Sbjct: 59 VVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QI 114
Query: 419 PPQ-LTELHSLSTFDVSYNNLS 439
L SL+T ++ N L+
Sbjct: 115 EVGAFNGLASLNTLELFDNWLT 136
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 2e-18
Identities = 45/217 (20%), Positives = 73/217 (33%), Gaps = 24/217 (11%)
Query: 49 IPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPN-YMNLTR 107
+P I + + + N + + + C +L L L +N +I + L
Sbjct: 26 VPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLAL 81
Query: 108 LWALYLYNNNFSGKIKDGLLRS-TELMVLDISNNRLSGHIPS-WMGNFSTLQILSMSKNL 165
L L L +N + L L + L + + LQ L + N
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNA 140
Query: 166 LEGNIPVQ-FNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFR 223
L+ +P F +L +L L + N +S L S++ L L N + + FR
Sbjct: 141 LQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFR 198
Query: 224 G-SALETLDLRIN-----------EHSNLRTLLLRGN 248
L TL L N L+ L L N
Sbjct: 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 5e-17
Identities = 45/210 (21%), Positives = 73/210 (34%), Gaps = 10/210 (4%)
Query: 9 GLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNN 68
+ + N S +P L + + N ++ + L LD+S N
Sbjct: 33 ASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 69 FAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYM--NLTRLWALYLYNNNFSGKIKDGL 126
+ + L L L Q + L L LYL +N + D
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGL--QELGPGLFRGLAALQYLYLQDNALQ-ALPDDT 148
Query: 127 LRS-TELMVLDISNNRLSGHIPSWM-GNFSTLQILSMSKNLLEGNIPVQFNNLASLQILN 184
R L L + NR+S +P +L L + +N + P F +L L L
Sbjct: 149 FRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207
Query: 185 ISENNLSGSMISTL-NLSSVEHLYLQNNAL 213
+ NNLS L L ++++L L +N
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 4e-13
Identities = 38/175 (21%), Positives = 71/175 (40%), Gaps = 22/175 (12%)
Query: 111 LYLYNNNFSGKIKDGLLRS-TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGN 169
++L+ N S + R+ L +L + +N L+ + + L+ L +S N +
Sbjct: 37 IFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 95
Query: 170 IPVQ-FNNLASLQILNISENNLSGSMIST---LNLSSVEHLYLQNNALGGSIPNTFFRGS 225
+ F+ L L L++ L + L+++++LYLQ+NAL ++P+ FR
Sbjct: 96 VDPATFHGLGRLHTLHLDRCGLQ--ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDL 152
Query: 226 ALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPA 280
NL L L GN + L L + + NR+ +
Sbjct: 153 ------------GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHP 194
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 1e-12
Identities = 56/278 (20%), Positives = 88/278 (31%), Gaps = 64/278 (23%)
Query: 138 SNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMIST 197
L +P G + Q + + N + F +L IL + N L+ +
Sbjct: 19 PQQGLQ-AVPV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA 75
Query: 198 L-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPH 256
L+ +E L L +NA S+ F G L TL L LQ P
Sbjct: 76 FTGLALLEQLDLSDNAQLRSVDPATFHGL------------GRLHTLHLDRCGLQELGPG 123
Query: 257 QLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYN 316
L L + + N L ++P F + N L
Sbjct: 124 LFRGLAALQYLYLQDNALQ-ALPD----DTFRDLGN---------LT------------- 156
Query: 317 STVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEI-G 375
L L GN + ++ F L + L L N + +
Sbjct: 157 ---HLFLHGNR---ISSVPERAFRG-----------LHSLDRLLLHQNRVA-HVHPHAFR 198
Query: 376 DLQNIHGLNLSHNFLSGSIPES-FSNLKMIESLDLSHN 412
DL + L L N LS ++P + L+ ++ L L+ N
Sbjct: 199 DLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 2e-07
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 359 LDLSNNELTGDIPSEI-GDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 417
L L +N L +P + DL N+ L L N +S +F L ++ L L N++
Sbjct: 134 LYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-H 191
Query: 418 IPPQ-LTELHSLSTFDVSYNNLS 439
+ P +L L T + NNLS
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLS 214
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 7e-07
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
Query: 359 LDLSNNELTGDIPSEI-GDLQNIHGLNLSHNFLSGSIPE-SFSNLKMIESLDLSHNKLNG 416
LDLS+N + L +H L+L L + F L ++ L L N L
Sbjct: 85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ- 142
Query: 417 QIPPQ-LTELHSLSTFDVSYNNLS 439
+P +L +L+ + N +S
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRIS 166
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
+ L N ++ + +N+ L L N L+ +F+ L ++E LDLS N +
Sbjct: 37 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96
Query: 419 PPQ-LTELHSLSTFDVSYNNLS 439
P L L T + L
Sbjct: 97 DPATFHGLGRLHTLHLDRCGLQ 118
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 19/87 (21%), Positives = 27/87 (31%), Gaps = 5/87 (5%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
L +P I + L N +S SF + + L L N L +I
Sbjct: 16 TSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARI 71
Query: 419 PPQ-LTELHSLSTFDVSYNNLSGPIPD 444
T L L D+S N +
Sbjct: 72 DAAAFTGLALLEQLDLSDNAQLRSVDP 98
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 86.7 bits (215), Expect = 2e-18
Identities = 52/218 (23%), Positives = 89/218 (40%), Gaps = 30/218 (13%)
Query: 83 SLEWLDLSNNNFVGQIFPN-YMNLTRLWALYLYNNNFSGKIKDGLLRS-TELMVLDISNN 140
+ L+L N I N + +L L L L N+ I+ G L L++ +N
Sbjct: 65 NTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDN 122
Query: 141 RLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQ-FNNLASLQILNISENNLSGSMISTL- 198
RL+ S L+ L + N +E +IP FN + SL+ L++ E +S +
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELK----RLSYIS 177
Query: 199 -----NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINE-----------HSNLRT 242
LS++ +L L L IP L+ LDL N +L+
Sbjct: 178 EGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK 235
Query: 243 LLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPA 280
L + + +Q + +L+ L ++++HN L +P
Sbjct: 236 LWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPH 272
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 83.3 bits (206), Expect = 3e-17
Identities = 61/312 (19%), Positives = 112/312 (35%), Gaps = 64/312 (20%)
Query: 129 STELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISEN 188
S + + L +P + + ++L++ +N ++ F +L L+IL +S N
Sbjct: 42 SNQFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN 98
Query: 189 NLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRG 247
++ I L+++ L L +N L +IPN F S L+ L LR
Sbjct: 99 HIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYL------------SKLKELWLRN 145
Query: 248 NYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLD 307
N ++ + + L +D+ + I F + N LR
Sbjct: 146 NPIESIPSYAFNRIPSLRRLDLGELKRLSYISE----GAFEGLSN---------LR---- 188
Query: 308 DAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELT 367
L L + R + L + + + LDLS N L+
Sbjct: 189 ------------YLNLAMCNLREIPNLTPLIKLDE----------------LDLSGNHLS 220
Query: 368 GDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQ-LTELH 426
P L ++ L + + + +F NL+ + ++L+HN L +P T LH
Sbjct: 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLH 279
Query: 427 SLSTFDVSYNNL 438
L + +N
Sbjct: 280 HLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 2e-15
Identities = 51/210 (24%), Positives = 80/210 (38%), Gaps = 10/210 (4%)
Query: 8 HGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSI-GKMQGLRLLDVSS 66
L L +SRN + L L + + N IP+ + L+ L + +
Sbjct: 88 RHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRN 145
Query: 67 NNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPN-YMNLTRLWALYLYNNNFSGKIKDG 125
N + SL LDL + I + L+ L L L N +I
Sbjct: 146 NPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EI-PN 202
Query: 126 LLRSTELMVLDISNNRLSGHIPSWM-GNFSTLQILSMSKNLLEGNIPVQFNNLASLQILN 184
L +L LD+S N LS I LQ L M ++ ++ F+NL SL +N
Sbjct: 203 LTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN 261
Query: 185 ISENNLSGSMISTL-NLSSVEHLYLQNNAL 213
++ NNL+ L +E ++L +N
Sbjct: 262 LAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 4e-07
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
L+L N++ + L+++ L LS N + +F+ L + +L+L N+L I
Sbjct: 69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TI 127
Query: 419 PPQ-LTELHSLSTFDVSYNNLS 439
P L L + N +
Sbjct: 128 PNGAFVYLSKLKELWLRNNPIE 149
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 359 LDLSNNELTGDIPSEI-GDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 417
L+L +N LT IP+ L + L L +N + +F+ + + LDL K
Sbjct: 117 LELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY 175
Query: 418 IPPQ-LTELHSLSTFDVSYNNLS 439
I L +L +++ NL
Sbjct: 176 ISEGAFEGLSNLRYLNLAMCNLR 198
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 2e-06
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
+ L ++P I N LNL N + SF +L+ +E L LS N + I
Sbjct: 48 VICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TI 103
Query: 419 PPQ-LTELHSLSTFDVSYNNLS 439
L +L+T ++ N L+
Sbjct: 104 EIGAFNGLANLNTLELFDNRLT 125
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 86.9 bits (215), Expect = 4e-18
Identities = 65/353 (18%), Positives = 103/353 (29%), Gaps = 85/353 (24%)
Query: 80 NCFSLEWLDLSNN--NFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDI 137
N FSL N F + + N +K+ L+ L +
Sbjct: 9 NNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ--FSELQL 66
Query: 138 SNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMIST 197
+ LS +P + + +L +++N L ++P ASL+ L+ +N LS T
Sbjct: 67 NRLNLS-SLPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS-----T 114
Query: 198 L--NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIP 255
L +S++HL + NN L +P + L + N L +P
Sbjct: 115 LPELPASLKHLDVDNNQLT-MLPELP----------------ALLEYINADNNQLTM-LP 156
Query: 256 HQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYY 315
L L + +N+L +P ++
Sbjct: 157 ELPTSLEVL---SVRNNQLT-FLPELPESL------------------------------ 182
Query: 316 NSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIG 375
L + N L A+ N E N +T IP I
Sbjct: 183 ---EALDVSTNLLESLPAVPVRN-----------HHSEETEIFFRCRENRIT-HIPENIL 227
Query: 376 DLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSL 428
L + L N LS I ES S + Q T L
Sbjct: 228 SLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPL 280
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 80.4 bits (198), Expect = 4e-16
Identities = 53/293 (18%), Positives = 92/293 (31%), Gaps = 44/293 (15%)
Query: 13 LDISRNSFSGKL---PQNMGIVLPKLVYMNISKNSFEGNIPSSI--GKMQGLRLLDVSSN 67
+S+NSF + + K + + S + + L ++
Sbjct: 11 FSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRN-EAVSLLKECLINQFSELQLNRL 69
Query: 68 NFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLL 127
N + L +L + L+++ N P L L +N S + +
Sbjct: 70 NLS-SLPDNL---PPQITVLEITQNAL--ISLPE--LPASLEYLDACDNRLS-TLPELP- 119
Query: 128 RSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISE 187
L LD+ NN+L+ +P L+ ++ N L +P SL++L++
Sbjct: 120 --ASLKHLDVDNNQLT-MLPELPAL---LEYINADNNQLT-MLP---ELPTSLEVLSVRN 169
Query: 188 NNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALET----LDLRIN-------- 235
N L+ + L S+E L + N L S+P R E R N
Sbjct: 170 NQLTF--LPEL-PESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRITHIPEN 225
Query: 236 --EHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNML 286
T++L N L I L + S T
Sbjct: 226 ILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHR 278
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 62.3 bits (151), Expect = 2e-10
Identities = 46/251 (18%), Positives = 81/251 (32%), Gaps = 66/251 (26%)
Query: 194 MISTLNLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRINEHSNLRTLLLRGNYLQG 252
M+ N S+ N +F E L + +LL
Sbjct: 4 MLPINNNFSLSQNSFYNTIS--GTYADYFSAWDKWEKQALPGENRNEAVSLL-------- 53
Query: 253 PIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVS 312
+ C + + + ++ L+ S+P + +
Sbjct: 54 ----KECLINQFSELQLNRLNLS-SLPDNLPPQI-------------------------- 82
Query: 313 NYYNSTVELLLDGNDGRML----GALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTG 368
L + N L +L ++ NR + L LD+ NN+LT
Sbjct: 83 ------TVLEITQNALISLPELPASLEYLD-ACDNRLSTLPELPASLK-HLDVDNNQLT- 133
Query: 369 DIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSL 428
+P L+ +N +N L+ +PE ++L E L + +N+L +P L +L
Sbjct: 134 MLPELPALLEY---INADNNQLT-MLPELPTSL---EVLSVRNNQLT-FLPELPESLEAL 185
Query: 429 STFDVSYNNLS 439
DVS N L
Sbjct: 186 ---DVSTNLLE 193
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 2e-04
Identities = 17/114 (14%), Positives = 38/114 (33%), Gaps = 12/114 (10%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLR----LLDVS 65
L L + N + LP+ L +++S N E ++P+ +
Sbjct: 162 LEVLSVRNNQLT-FLPELPE----SLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCR 215
Query: 66 SNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFS 119
N + +++ ++ + L +N +I + T + FS
Sbjct: 216 ENRIT-HIPENI-LSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFS 267
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 84.1 bits (208), Expect = 2e-17
Identities = 55/361 (15%), Positives = 118/361 (32%), Gaps = 25/361 (6%)
Query: 83 SLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRL 142
L++S N + ++L++L L + +N + EL LD+S+N+L
Sbjct: 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81
Query: 143 SGHIPSWMGNFSTLQILSMSKNLLEGNIPVQ--FNNLASLQILNISENNL-SGSMISTLN 199
I L+ L +S N + +P+ F N++ L+ L +S +L S++ +
Sbjct: 82 V-KISC--HPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137
Query: 200 LSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLC 259
L+ + L + G + T L + H +
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGL---------------QDFNTESLHIVFPTNKEFHFIL 182
Query: 260 HLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTV 319
+ + ++ + + + + S + L + + L++ + +
Sbjct: 183 DVSVKTVANLELSNIKCVLEDNKCSYFLSILAK--LQTNPKLSNLTLNNIETTWNSFIRI 240
Query: 320 ELLLDGNDGRMLGAL-VAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQ 378
L+ V + R Y G L+ ++ + ++
Sbjct: 241 LQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFS 300
Query: 379 NIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNL 438
N++ N + + S + LD S+N L + L L T + N L
Sbjct: 301 NMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360
Query: 439 S 439
Sbjct: 361 K 361
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 83.0 bits (205), Expect = 5e-17
Identities = 85/452 (18%), Positives = 165/452 (36%), Gaps = 45/452 (9%)
Query: 13 LDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGE 72
L+IS+N S +L + + L KL + IS N + S Q L LD+S N
Sbjct: 26 LNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI 84
Query: 73 LSQSLVINCFSLEWLDLSNNNF----VGQIFPNYMNLTRLWALYLYNNNFSGKIKDGL-L 127
V +L+ LDLS N F + + F N +++L L L + +
Sbjct: 85 SCHPTV----NLKHLDLSFNAFDALPICKEFGN---MSQLKFLGLSTTHLEKSSVLPIAH 137
Query: 128 RSTELMVLDISNNRLSGHIPSWMGNFST--LQILSMSKNLLEGNIPVQFNNLASLQILNI 185
+ ++L + P + +F+T L I+ + + V +A+L++ NI
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197
Query: 186 SENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRG--SALETLDLRINEHSNLRTL 243
L++ + + + L + T + L+ + + ++ +
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257
Query: 244 LLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLR 303
L+G + L+ L I + + + ++ N + F +
Sbjct: 258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFP-----QSYIYEIFSNMNIKNFTVS-G 311
Query: 304 MYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNF----------MTKNRYESYKG--- 350
+ + + + L N L V N + N+ +
Sbjct: 312 TRMVHMLCPSKISPFLHLDFSNNL---LTDTVFENCGHLTELETLILQMNQLKELSKIAE 368
Query: 351 --DILELMAGLDLSNNELTGDIPSEIGD-LQNIHGLNLSHNFLSGSIPESFSNLKMIESL 407
++ + LD+S N ++ D +++ LN+S N L+ +I I+ L
Sbjct: 369 MTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR--IKVL 426
Query: 408 DLSHNKLNGQIPPQLTELHSLSTFDVSYNNLS 439
DL NK+ IP Q+ +L +L +V+ N L
Sbjct: 427 DLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 76.4 bits (188), Expect = 6e-15
Identities = 53/240 (22%), Positives = 93/240 (38%), Gaps = 24/240 (10%)
Query: 10 LHSLDISRNSFSGKLPQNM----GIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVS 65
+ IS G+L G L L + + F + + + +
Sbjct: 249 VWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFT 308
Query: 66 SNNFAGELSQSLVINCFS----LEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFS-- 119
+ ++ + + C S LD SNN +F N +LT L L L N
Sbjct: 309 VSG-----TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKEL 363
Query: 120 GKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFS---TLQILSMSKNLLEGNIPVQFNN 176
KI + + L LDIS N +S G+ S +L L+MS N+L I
Sbjct: 364 SKIAEMTTQMKSLQQLDISQNSVSYDEKK--GDCSWTKSLLSLNMSSNILTDTIFRCL-- 419
Query: 177 LASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRIN 235
+++L++ N + + L +++ L + +N L S+P+ F ++L+ + L N
Sbjct: 420 PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKIWLHTN 478
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 76.1 bits (187), Expect = 8e-15
Identities = 79/458 (17%), Positives = 146/458 (31%), Gaps = 53/458 (11%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
L L IS N L ++ +L Y+++S N I L+ LD+S N F
Sbjct: 47 LRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLV-KISC--HPTVNLKHLDLSFNAF 102
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRS 129
N L++L LS + +L L + + K L+
Sbjct: 103 DALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD 162
Query: 130 TELMVLDI---SNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNIS 186
L I +N + + + L++ ++ L + + LA LQ
Sbjct: 163 FNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKL 222
Query: 187 EN----------NLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGS-----ALETLD 231
N N ++ + ++V + + N L G + F S AL
Sbjct: 223 SNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQ 282
Query: 232 LRINE-----------HSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPA 280
+ + SN+ + + + +D S+N L ++
Sbjct: 283 VVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFE 342
Query: 281 CITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFM 340
++ E L L+ A ++ S +L + N ++
Sbjct: 343 NCGHL----TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT 398
Query: 341 TKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSN 400
L++S+N LT I + I L+L N + SIP+
Sbjct: 399 KSLLS-------------LNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVK 442
Query: 401 LKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNL 438
L+ ++ L+++ N+L L SL + N
Sbjct: 443 LEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 2e-09
Identities = 39/197 (19%), Positives = 75/197 (38%), Gaps = 13/197 (6%)
Query: 1 FQLTSAQHGLHSLDISRNSFSGK--LPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQG 58
F + +++I + SG + + ++++ S N + + G +
Sbjct: 290 FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTE 349
Query: 59 LRLLDVSSNNFAGELSQSLVINCF----SLEWLDLSNNNFVGQIFPNY-MNLTRLWALYL 113
L L + N S + SL+ LD+S N+ L +L +
Sbjct: 350 LETLILQMNQLK---ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406
Query: 114 YNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQ 173
+N + I L + VLD+ +N++ IP + LQ L+++ N L+
Sbjct: 407 SSNILTDTIFRCLPPRIK--VLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGI 463
Query: 174 FNNLASLQILNISENNL 190
F+ L SLQ + + N
Sbjct: 464 FDRLTSLQKIWLHTNPW 480
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 1e-06
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
L++S N ++ S+I L + L +SHN + F + +E LDLSHNKL
Sbjct: 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS 85
Query: 419 PPQLTELHSLSTFDVSYNNLSGPIPDKEQFS 449
L L D+S+N +P ++F
Sbjct: 86 CHPTVNLKHL---DLSFNAFDA-LPICKEFG 112
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 84.2 bits (208), Expect = 3e-17
Identities = 88/446 (19%), Positives = 157/446 (35%), Gaps = 35/446 (7%)
Query: 12 SLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSI-GKMQGLRLLDVSSNNFA 70
+L +S+NS S +L L +L + +S N ++ + Q L LDVS N
Sbjct: 56 ALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ 113
Query: 71 GELSQSLVINCFSLEWLDLSNNNF----VGQIFPNYMNLTRLWALYLYNNNFSGKIKDGL 126
+ SL LDLS N+F V + F N LT L L F ++
Sbjct: 114 NISCCPMA----SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLG---LSAAKFR-QLDLLP 165
Query: 127 LRSTELMVLDISNNRLSGH----IPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQI 182
+ L + + + N + L ++ +L + + N L LQ+
Sbjct: 166 VAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL 225
Query: 183 LNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRT 242
NI N+ + + T L N L + R E+ N+
Sbjct: 226 SNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285
Query: 243 LLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPA---CITNMLFSRVENGYLYGFD 299
L + + + L+ L I + + S A M +
Sbjct: 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIH 345
Query: 300 IVLRMYLDDA-YVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKG--DILELM 356
+V +++ N + + G L L + + +N +++ + + M
Sbjct: 346 MVCPPSPSSFTFLNFTQNVFTDSVFQGCST--LKRLQTLI-LQRNGLKNFFKVALMTKNM 402
Query: 357 AGLDLSNNELT----GDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHN 412
+ L+ + L ++I LNLS N L+GS+ ++ LDL +N
Sbjct: 403 SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK--VKVLDLHNN 460
Query: 413 KLNGQIPPQLTELHSLSTFDVSYNNL 438
++ IP +T L +L +V+ N L
Sbjct: 461 RIM-SIPKDVTHLQALQELNVASNQL 485
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 75.3 bits (185), Expect = 1e-14
Identities = 65/363 (17%), Positives = 116/363 (31%), Gaps = 31/363 (8%)
Query: 83 SLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRS-TELMVLDISNNR 141
+ L LS N+ P+ L+ L L L +N + + +L LD+S+NR
Sbjct: 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNR 111
Query: 142 LSGHIPSWMGNFSTLQILSMSKNLLEGNIPV--QFNNLASLQILNISENNLSGSMISTLN 199
L +I ++L+ L +S N + +PV +F NL L L LS + L+
Sbjct: 112 LQ-NISC--CPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLG-----LSAAKFRQLD 162
Query: 200 LSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLC 259
L V HL+L L ++ + + N L L +
Sbjct: 163 LLPVAHLHLSCILLD-------LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNM 215
Query: 260 HLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYV---SNYYN 316
+ LG + +S+ +LN + L L + V ++
Sbjct: 216 SVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWP 275
Query: 317 STVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGD 376
VE L N + + +Y L+ + + N +
Sbjct: 276 RPVEYLNIYN--------LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSV 327
Query: 377 LQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYN 436
++ LS + + L+ + N + + L L T + N
Sbjct: 328 FAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN 387
Query: 437 NLS 439
L
Sbjct: 388 GLK 390
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 6e-12
Identities = 42/238 (17%), Positives = 88/238 (36%), Gaps = 40/238 (16%)
Query: 8 HGLHSLDISRNSFSGKL----PQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLD 63
+ L+I + + ++ L L+ ++ F + + + +
Sbjct: 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKM 335
Query: 64 VSSNNFAGELSQSLVINCF----SLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFS 119
+S ++ + + + C S +L+ + N F +F L RL L L N
Sbjct: 336 LSISD-----TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390
Query: 120 --GKIKDGLLRSTELMVLDISNNRLSGHIP----SWMGN-------------------FS 154
K+ + L LD+S N L+ H +W +
Sbjct: 391 NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP 450
Query: 155 TLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNN 211
+++L + N + +IP +L +LQ LN++ N L L+S+++++L +N
Sbjct: 451 KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 66.0 bits (161), Expect = 1e-11
Identities = 74/420 (17%), Positives = 135/420 (32%), Gaps = 77/420 (18%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
L L +S F + + + +++ +G S+ L V N
Sbjct: 148 LTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS 207
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLT-------RLWALYLYNNNFSGKI 122
S + ++ +L L LSN + M L + L + + K
Sbjct: 208 --LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265
Query: 123 KDGLLRS---TELMVLDISNNRLSGHIPSWMGNFS-----TLQILSMSKNLLEGNIPVQF 174
L + + L+I N ++ I +S +L I + + + +
Sbjct: 266 SVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALY 325
Query: 175 NNLASLQILNISENNL-SGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLR 233
+ A + I +S ++ M+ + SS L N S+ L+TL L+
Sbjct: 326 SVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQ 385
Query: 234 INEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENG 293
N N + ++ L +D+S N S+ + + + E+
Sbjct: 386 RNGLKNF-----------FKVALMTKNMSSLETLDVSLN----SLNSHAYDRTCAWAES- 429
Query: 294 YLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDIL 353
+ L L N ML V K +
Sbjct: 430 ------------------------ILVLNLSSN---MLTGSVFRCLPPKVKV-------- 454
Query: 354 ELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPE-SFSNLKMIESLDLSHN 412
LDL NN + IP ++ LQ + LN++ N L S+P+ F L ++ + L N
Sbjct: 455 -----LDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 5e-08
Identities = 40/183 (21%), Positives = 79/183 (43%), Gaps = 8/183 (4%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
++ +S + + + ++N ++N F ++ ++ L+ L + N
Sbjct: 331 MNIKMLSISD-TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL 389
Query: 70 AG-ELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTR-LWALYLYNNNFSGKIKDGLL 127
+ N SLE LD+S N+ + + L L +N +G + L
Sbjct: 390 KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP 449
Query: 128 RSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPV-QFNNLASLQILNIS 186
+ VLD+ NNR+ IP + + LQ L+++ N L+ ++P F+ L SLQ + +
Sbjct: 450 PK--VKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLH 505
Query: 187 ENN 189
+N
Sbjct: 506 DNP 508
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 2e-05
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPES-FSNLKMIESLDLSHNKLNGQ 417
L LS N ++ +I L + L LSHN + S+ F + +E LD+SHN+L
Sbjct: 57 LSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQN- 114
Query: 418 IPPQLTELHSLSTFDVSYNNLSGPIPDKEQFS 449
I + SL D+S+N+ +P ++F
Sbjct: 115 ISCC--PMASLRHLDLSFNDFDV-LPVCKEFG 143
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 79.6 bits (196), Expect = 2e-16
Identities = 48/259 (18%), Positives = 78/259 (30%), Gaps = 32/259 (12%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVL--PKLVYMNISKNSFEGNIPSSIGKMQG-----LRLL 62
L L + ++ VL L + + G P + + G L L
Sbjct: 70 LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLR 129
Query: 63 DVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKI 122
+VS L++ L+ L ++ + + L L L +N G+
Sbjct: 130 NVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189
Query: 123 K----DGLLRSTELMVLDISNNR---LSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQ-F 174
L+ L VL + N SG + LQ L +S N L
Sbjct: 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249
Query: 175 NNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRI 234
+ + L LN+S L + + + L L N L P
Sbjct: 250 DWPSQLNSLNLSFTGLKQ--VPKGLPAKLSVLDLSYNRL-DRNP--------------SP 292
Query: 235 NEHSNLRTLLLRGNYLQGP 253
+E + L L+GN
Sbjct: 293 DELPQVGNLSLKGNPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 8e-16
Identities = 50/255 (19%), Positives = 88/255 (34%), Gaps = 35/255 (13%)
Query: 59 LRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPN---YMNLTRLWALYLYN 115
L L + A + +I SL+ L + +I + ++ L L L N
Sbjct: 45 LEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLEN 104
Query: 116 NNFSGKI--KDGLLRSTELMVLDISNNRLSGHIPSWMGNFST-----LQILSMSKNLLEG 168
+G +L +L++ N + +W+ L++LS+++
Sbjct: 105 LEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQAHSLN 163
Query: 169 NIPVQFNNLASLQILNISENNLSG-----SMISTLNLSSVEHLYLQNN---ALGGSIPNT 220
Q +L L++S+N G S + L +++ L L+N G
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223
Query: 221 FFRGSALETLDLRINE------------HSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMD 268
L+ LDL N S L +L L L+ L L D
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVL---D 280
Query: 269 ISHNRLNGSIPACIT 283
+S+NRL+ P+
Sbjct: 281 LSYNRLD-RNPSPDE 294
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 4e-10
Identities = 46/305 (15%), Positives = 81/305 (26%), Gaps = 78/305 (25%)
Query: 151 GNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMI----STLNLSSVEHL 206
G S +L + SL+ L + + ++ L +S ++ L
Sbjct: 41 GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100
Query: 207 YLQNNALGGSIPNTFFR--GSALETLDLRINE---------------HSNLRTLLLRGNY 249
L+N + G+ P G L L+LR L+ L + +
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160
Query: 250 LQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDA 309
Q+ L +D+S N G L A
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERG--------------------------LISA 194
Query: 310 YVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGD 369
+ + L L + + + + + LDLS+N L
Sbjct: 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQG-----------LDLSHNSLRDA 243
Query: 370 IPSEIGD-LQNIHGLNLSHNFLSGSIPESFSNLKMI-------------------ESLDL 409
+ D ++ LNLS L + L ++ +L L
Sbjct: 244 AGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSL 303
Query: 410 SHNKL 414
N
Sbjct: 304 KGNPF 308
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 53.4 bits (128), Expect = 6e-08
Identities = 51/293 (17%), Positives = 91/293 (31%), Gaps = 40/293 (13%)
Query: 111 LYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWM---GNFSTLQILSMSKNLLE 167
L + +++S L L + R+ I S LQ L++ +
Sbjct: 49 LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108
Query: 168 GNIPVQ--FNNLASLQILNISENNLSG-----SMISTLNLSSVEHLYLQNNALGGSIPNT 220
G P L ILN+ + + + + ++ L +
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ 168
Query: 221 FFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPA 280
AL TLDL N R L+ P + L+ L + + +G A
Sbjct: 169 VRVFPALSTLDLSDNPELGERGLIS------ALCPLKFPTLQVLALRNAGMETPSGVCSA 222
Query: 281 CITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFM 340
+ + LD +S +NS + + L ++N +
Sbjct: 223 LAAARVQLQ---------------GLD---LS--HNSLRDAAGAPS-CDWPSQLNSLN-L 260
Query: 341 TKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGS 393
+ + + ++ LDLS N L PS +L + L+L N S
Sbjct: 261 SFTGLKQVPKGLPAKLSVLDLSYNRLDR-NPS-PDELPQVGNLSLKGNPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 9e-08
Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 7/93 (7%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFS----NLKMIESLDLSHNKL 414
L ++ ++ + L+LS N G + ++ L L + +
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213
Query: 415 N---GQIPPQLTELHSLSTFDVSYNNLSGPIPD 444
G L D+S+N+L
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 1e-07
Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 8/89 (8%)
Query: 359 LDLSNNELTGDIPSEI----GDLQNIHGLNLSHNF---LSGSIPESFSNLKMIESLDLSH 411
LDLS+N G+ + L L + SG + ++ LDLSH
Sbjct: 178 LDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSH 237
Query: 412 NKLNGQIPPQL-TELHSLSTFDVSYNNLS 439
N L L++ ++S+ L
Sbjct: 238 NSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 3e-07
Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 6/95 (6%)
Query: 2 QLTSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRL 61
L +A+ L LD+S NS +L +N+S + +P + L +
Sbjct: 222 ALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ-VPKGLP--AKLSV 278
Query: 62 LDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVG 96
LD+S N + L L N F+
Sbjct: 279 LDLSYNRLD---RNPSPDELPQVGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 48.4 bits (115), Expect = 3e-06
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 6/96 (6%)
Query: 359 LDLSNNELTGDIPSEIGDLQ--NIHGLNLSHNFLSG---SIPESFSNLKM-IESLDLSHN 412
L L N E+TG P + + +++ LNL + + + E LK ++ L ++
Sbjct: 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA 159
Query: 413 KLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQF 448
Q+ +LST D+S N G
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 6e-16
Identities = 56/303 (18%), Positives = 107/303 (35%), Gaps = 55/303 (18%)
Query: 129 STELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQ-FNNLASLQILNISE 187
+ + LD+SNNR++ S + LQ L ++ N + I F++L SL+ L++S
Sbjct: 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSY 109
Query: 188 NNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRINEH-------- 237
N LS S LSS+ L L N + F + L+ L + +
Sbjct: 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169
Query: 238 ----SNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENG 293
+ L L + + LQ P L ++ + + + + + ++ S
Sbjct: 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSS----- 223
Query: 294 YLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDIL 353
V + L D LD L + + K + +
Sbjct: 224 -------VECLELRD------------TDLDTFHFSELSTGETNSLIKKFTFRN------ 258
Query: 354 ELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPES-FSNLKMIESLDLSHN 412
+ +++ L + + + + L S N L S+P+ F L ++ + L N
Sbjct: 259 -----VKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN 311
Query: 413 KLN 415
+
Sbjct: 312 PWD 314
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 9e-16
Identities = 55/260 (21%), Positives = 99/260 (38%), Gaps = 37/260 (14%)
Query: 48 NIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYM--NL 105
+IPS + + ++ LD+S+N +S S + C +L+ L L++N +L
Sbjct: 45 SIPSGL--TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGI--NTIEEDSFSSL 99
Query: 106 TRLWALYLYNNNFSGKIKDGLLRS-TELMVLDISNNRLSGHIP--SWMGNFSTLQILSMS 162
L L L N S + + + L L++ N + S + + LQIL +
Sbjct: 100 GSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVG 157
Query: 163 KNLLEGNIPVQ-FNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNT 220
I + F L L+ L I ++L +L ++ +V HL L +
Sbjct: 158 NMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH-ILLLEI 216
Query: 221 FFRG-SALETLDLRINEHSN-------------------LRTLLLRGNYLQGPIPHQLCH 260
F S++E L+LR + R + + L + L
Sbjct: 217 FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQ 275
Query: 261 LRKLGIMDISHNRLNGSIPA 280
+ L ++ S N+L S+P
Sbjct: 276 ISGLLELEFSRNQLK-SVPD 294
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 1e-13
Identities = 42/239 (17%), Positives = 93/239 (38%), Gaps = 18/239 (7%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSI-GKMQGLRLLDVSSNN 68
L +L ++ N + + ++ L L ++++S N N+ SS + L L++ N
Sbjct: 78 LQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNP 135
Query: 69 FAGELSQSLVINCFSLEWLDLSNNNFVGQIFPN-YMNLTRLWALYLYNNNFSGKIKDGLL 127
+ SL + L+ L + N + +I + LT L L + ++ + L
Sbjct: 136 YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSL 194
Query: 128 RS-TELMVLDISNNRLSGHIPSWM-GNFSTLQILSMSKNLLEGNIPVQ--------FNNL 177
+S + L + + + S+++ L + L+ +
Sbjct: 195 KSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKK 253
Query: 178 ASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRIN 235
+ + + I++ +L M +S + L N L S+P+ F ++L+ + L N
Sbjct: 254 FTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL-KSVPDGIFDRLTSLQKIWLHTN 311
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 71.7 bits (176), Expect = 1e-13
Identities = 56/331 (16%), Positives = 108/331 (32%), Gaps = 78/331 (23%)
Query: 134 VLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGS 193
+ S+ L+ IPS G ++ L +S N + +LQ L ++ N ++
Sbjct: 35 ICKGSSGSLN-SIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-- 89
Query: 194 MIST---LNLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRIN------------EH 237
I +L S+EHL L N L ++ +++F+ S+L L+L N
Sbjct: 90 TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL 148
Query: 238 SNLRTLLLRGNYLQGPIPHQ-LCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLY 296
+ L+ L + I + L L ++I + L S ++N
Sbjct: 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPK----SLKSIQN---- 199
Query: 297 GFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELM 356
L+L +L + D+ +
Sbjct: 200 ---------------------VSHLILHMKQHILLLEIFV--------------DVTSSV 224
Query: 357 AGLDLSNNELTGDIPSEI--------GDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLD 408
L+L + +L SE+ + ++ L + + + + + L+
Sbjct: 225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELE 283
Query: 409 LSHNKLNGQIPPQ-LTELHSLSTFDVSYNNL 438
S N+L +P L SL + N
Sbjct: 284 FSRNQLKS-VPDGIFDRLTSLQKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 5e-06
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPE-SFSNLKMIESLDLSHNKLNGQ 417
LDLSNN +T S++ N+ L L+ N ++ +I E SFS+L +E LDLS+N L
Sbjct: 57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL-SN 114
Query: 418 IPPQL-TELHSLSTFDVSYNNLSGPIPDKEQFS 449
+ L SL+ ++ N + + FS
Sbjct: 115 LSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFS 146
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 360 DLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP 419
S+ L IPS + + + L+LS+N ++ +++L L+ N +N I
Sbjct: 37 KGSSGSLN-SIPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIE 92
Query: 420 PQL-TELHSLSTFDVSYNNLS 439
+ L SL D+SYN LS
Sbjct: 93 EDSFSSLGSLEHLDLSYNYLS 113
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 4/84 (4%)
Query: 359 LDLSNNELTGDIPSEI-GDLQNIHGLNLSHNFLSGSIPE-SFSNLKMIESLDLSHNKLNG 416
L+L N + + L + L + + I F+ L +E L++ + L
Sbjct: 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ- 187
Query: 417 QIPPQ-LTELHSLSTFDVSYNNLS 439
P+ L + ++S +
Sbjct: 188 SYEPKSLKSIQNVSHLILHMKQHI 211
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 8e-04
Identities = 39/251 (15%), Positives = 83/251 (33%), Gaps = 47/251 (18%)
Query: 201 SSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCH 260
+V+ L L NN + I N+ + NL+ L+L N +
Sbjct: 52 EAVKSLDLSNNRIT-YISNSDLQR------------CVNLQALVLTSNGINTIEEDSFSS 98
Query: 261 LRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVE 320
L L +D+S+N L ++ + F + + + + L N Y +
Sbjct: 99 LGSLEHLDLSYNYL-SNLSS----SWFKPLSS--------LTFLNLLG----NPYKT--- 138
Query: 321 LLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGL---DLSNNELTGDIPSEIGDL 377
L + + L L + + + + + L ++ ++L P + +
Sbjct: 139 -LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI 197
Query: 378 QNIHGLNLSHNFLSGSIPE-SFSNLKMIESLDLSHNKLNG----QIPP----QLTELHSL 428
QN+ L L + E +E L+L L+ ++ L + +
Sbjct: 198 QNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256
Query: 429 STFDVSYNNLS 439
++ +L
Sbjct: 257 RNVKITDESLF 267
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 7e-16
Identities = 64/408 (15%), Positives = 127/408 (31%), Gaps = 74/408 (18%)
Query: 32 LPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSN 91
L L ++ +S + I K+ GL L +SNN ++ + +L +L +
Sbjct: 41 LATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNN----ITTLDLSQNTNLTYLACDS 94
Query: 92 NNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMG 151
N LT+L L N + K + ++ L L+ + N L+ I +
Sbjct: 95 NKLTNLDVT---PLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLT-EID--VS 145
Query: 152 NFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNN 211
+ + L L N + L L+ S N ++ + + L N
Sbjct: 146 HNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITE--LDVSQNKLLNRLNCDTN 201
Query: 212 ALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISH 271
+ LDL N L L N L I + L +L D S
Sbjct: 202 --------------NITKLDLNQN--IQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSV 242
Query: 272 NRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRML 331
N L + ++ + L D+ ++T + R +
Sbjct: 243 NPLTELDVSTLSKLTTLHCIQTDLLEIDLT--------------HNTQLIYFQAEGCRKI 288
Query: 332 GALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLS 391
L + + LD +T ++ + + L L++ L+
Sbjct: 289 KELDVTH--------------NTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT 331
Query: 392 GSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLS 439
+ S+ ++SL + + + ++ +L+ +
Sbjct: 332 -ELD--VSHNTKLKSLSCVNAHIQDF--SSVGKIPALNNNFEAEGQTI 374
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 1e-11
Identities = 48/356 (13%), Positives = 106/356 (29%), Gaps = 44/356 (12%)
Query: 84 LEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLS 143
+ + L L +L +N++ + G+ + T L L ++N ++
Sbjct: 20 FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNNIT 77
Query: 144 GHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSV 203
+ + + L L+ N L + L L LN N L+ + +
Sbjct: 78 -TLD--LSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLTK--LDVSQNPLL 129
Query: 204 EHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRK 263
+L N L +D+ N + L L N + + +
Sbjct: 130 TYLNCARNTL--------------TEIDVSHN--TQLTELDCHLNKKITKLD--VTPQTQ 171
Query: 264 LGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLL 323
L +D S N++ + + + + D+ + L S+ + +++
Sbjct: 172 LTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDV-- 229
Query: 324 DGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGL 383
L L + + N L + L +L EI N +
Sbjct: 230 -----TPLTQLTYFD-CSVNPLTELDVSTLSKLTTLHCIQTDLL-----EIDLTHNTQLI 278
Query: 384 NLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLS 439
++ + LD + ++ L++ L ++ L+
Sbjct: 279 YFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT 331
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 42/261 (16%), Positives = 79/261 (30%), Gaps = 32/261 (12%)
Query: 32 LPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSN 91
+L ++ N + + L LD S N +++ V L L+
Sbjct: 147 NTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNK----ITELDVSQNKLLNRLNCDT 200
Query: 92 NNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMG 151
NN + LT L +N + +I L T+L D S N L+ +
Sbjct: 201 NNITKLDLNQNIQLTFL---DCSSNKLT-EIDVTPL--TQLTYFDCSVNPLT-ELDVS-- 251
Query: 152 NFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNN 211
S L L + L L Q + ++ + + + L Q
Sbjct: 252 TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGC--RKIKELDVT--HNTQLYLLDCQAA 307
Query: 212 ALGGSIPNTFFRGSALETLDLRINE--------HSNLRTLLLRGNYLQGPIPHQLCHLRK 263
+ + + L L L E ++ L++L ++Q + +
Sbjct: 308 GI-TELDLSQN--PKLVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQD-FS-SVGKIPA 362
Query: 264 LGIMDISHNRLNGSIPACITN 284
L + + +TN
Sbjct: 363 LNNNFEAEGQTITMPKETLTN 383
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 1e-09
Identities = 49/288 (17%), Positives = 92/288 (31%), Gaps = 39/288 (13%)
Query: 152 NFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNN 211
NF++ + + + LA+L L+ ++++ M L+ + L +N
Sbjct: 19 NFASEVAAAFEMQATD---TISEEQLATLTSLDCHNSSIT-DMTGIEKLTGLTKLICTSN 74
Query: 212 ALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISH 271
+ TLDL N +NL L N L L L L +
Sbjct: 75 --------------NITTLDLSQN--TNLTYLACDSNKLTNLDVTPLTKLTYL---NCDT 115
Query: 272 NRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRML 331
N+L + + + L D+ L + T +
Sbjct: 116 NKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTP------Q 169
Query: 332 GALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLS 391
L ++ + N+ +L+ L+ N +T + + + L+ S N L+
Sbjct: 170 TQLTTLDC-SFNKITELDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLT 225
Query: 392 GSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLS 439
I + L + D S N L L++L +L +L
Sbjct: 226 -EID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTL---HCIQTDLL 267
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 25/182 (13%), Positives = 64/182 (35%), Gaps = 18/182 (9%)
Query: 32 LPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSN 91
L +L Y + S N + + + L L + L + + + L +
Sbjct: 232 LTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTD----LLEIDLTHNTQLIYFQAEG 284
Query: 92 NNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMG 151
+ + + T+L+ L + ++ +L+ L ++N L+ + +
Sbjct: 285 CRKI--KELDVTHNTQLYLLDCQAAGIT-ELDLSQN--PKLVYLYLNNTELT-ELD--VS 336
Query: 152 NFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNN 211
+ + L+ LS ++ + + +L +E TL +S+ + + +
Sbjct: 337 HNTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNSL-TIAVSPD 393
Query: 212 AL 213
L
Sbjct: 394 LL 395
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 77.1 bits (189), Expect = 5e-15
Identities = 50/236 (21%), Positives = 90/236 (38%), Gaps = 35/236 (14%)
Query: 32 LPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSN 91
+ + N+ K S + ++ + + ++++ S + ++ L L+
Sbjct: 20 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLNG 74
Query: 92 NNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKD--GLLRSTELMVLDISNNRLSGHIPSW 149
N + I P NL L L+L N KIKD L +L L + +N +S I
Sbjct: 75 NK-LTDIKPLT-NLKNLGWLFLDEN----KIKDLSSLKDLKKLKSLSLEHNGIS-DING- 126
Query: 150 MGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYL 208
+ + L+ L + N + +I V + L L L++ +N +S I L L+ +++LYL
Sbjct: 127 LVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYL 182
Query: 209 QNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKL 264
N + S L L NL L L + +L
Sbjct: 183 SKNHI-----------SDLRAL----AGLKNLDVLELFSQECLNKPINHQSNLVVP 223
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 5e-06
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
L L +N ++ DI + L + L L +N ++ S L +++L L N+++ I
Sbjct: 114 LSLEHNGIS-DING-LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS-DI 168
Query: 419 PPQLTELHSLSTFDVSYNNLS 439
P L L L +S N++S
Sbjct: 169 VP-LAGLTKLQNLYLSKNHIS 188
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 8e-15
Identities = 49/263 (18%), Positives = 96/263 (36%), Gaps = 44/263 (16%)
Query: 22 GKLPQNMGI-------VLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELS 74
G + Q I L + + K++ + + G+ L +
Sbjct: 1 GSITQPTAINVIFPDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT---T 55
Query: 75 QSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKD--GLLRSTEL 132
V +L L+L +N NLT++ L L N +K+ + +
Sbjct: 56 IEGVQYLNNLIGLELKDNQI--TDLAPLKNLTKITELELSGN----PLKNVSAIAGLQSI 109
Query: 133 MVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSG 192
LD+++ +++ + + S LQ+L + N + NI L +LQ L+I +S
Sbjct: 110 KTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSD 165
Query: 193 SMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQ 251
++ L NLS + L +N + I + NL + L+ N +
Sbjct: 166 --LTPLANLSKLTTLKADDNKI-SDISP--------------LASLPNLIEVHLKNNQIS 208
Query: 252 GPIPHQLCHLRKLGIMDISHNRL 274
P L + L I+ +++ +
Sbjct: 209 DVSP--LANTSNLFIVTLTNQTI 229
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
L+L +N++T D+ + + +L I L LS N L + + L+ I++LDL+ ++
Sbjct: 68 LELKDNQIT-DL-APLKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITDVT 123
Query: 419 PPQLTELHSLSTFDVSYNNLS 439
P L L +L + N ++
Sbjct: 124 P--LAGLSNLQVLYLDLNQIT 142
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 7e-05
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
L L N++T +I S + L N+ L++ + +S + +NL + +L NK++ I
Sbjct: 134 LYLDLNQIT-NI-SPLAGLTNLQYLSIGNAQVS-DL-TPLANLSKLTTLKADDNKIS-DI 188
Query: 419 PPQLTELHSLSTFDVSYNNLS 439
P L L +L + N +S
Sbjct: 189 SP-LASLPNLIEVHLKNNQIS 208
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 71.8 bits (176), Expect = 9e-14
Identities = 40/168 (23%), Positives = 67/168 (39%), Gaps = 19/168 (11%)
Query: 83 SLEWLDLSNNNFVGQIFPNYM--NLTRLWALYLYNNNFSGKIKDGLLRS-TELMVLDISN 139
LDLS+NN ++ + LT L +L L +N+ + I L LD+S+
Sbjct: 40 YTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97
Query: 140 NRLSGHIPSWMGNF---STLQILSMSKNLLEGNIPV-QFNNLASLQILNISENNLS---- 191
N L + F L++L + N + + F ++A LQ L +S+N +S
Sbjct: 98 NHLH-TLDE--FLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPV 153
Query: 192 GSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSN 239
+ L + L L +N L + A L + H+N
Sbjct: 154 ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYL--HNN 199
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 2e-10
Identities = 41/173 (23%), Positives = 71/173 (41%), Gaps = 16/173 (9%)
Query: 129 STELMVLDISNNRLSGHIPSWM-GNFSTLQILSMSKNLLEGNIPVQ-FNNLASLQILNIS 186
+ +LD+S+N LS W + L L +S N L I + F + +L+ L++S
Sbjct: 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS 96
Query: 187 ENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRINEHSNLRTLL 244
N+L +L ++E L L NN + + F + L+ L L N+ S L
Sbjct: 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVEL 155
Query: 245 LRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYG 297
++ L KL ++D+S N+L + + YL+
Sbjct: 156 IKD----------GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 2e-08
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 359 LDLSNNELTGDIPSEI-GDLQNIHGLNLSHNFLSGSIPE-SFSNLKMIESLDLSHNKLNG 416
LDLS+N L + + DLQ + L L +N + + +F ++ ++ L LS N+++
Sbjct: 93 LDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS- 149
Query: 417 QIPPQ----LTELHSLSTFDVSYNNLS 439
+ P + +L L D+S N L
Sbjct: 150 RFPVELIKDGNKLPKLMLLDLSSNKLK 176
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 2e-06
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 359 LDLSNNELTGDIPSEI--GDLQNIHGLNLSHNFLSGSIPE-SFSNLKMIESLDLSHNKLN 415
LDLS+N L+ + +E L N+H L LSHN L+ I +F + + LDLS N L+
Sbjct: 44 LDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH 101
Query: 416 GQIPPQ-LTELHSLSTFDVSYNNLS 439
+ ++L +L + N++
Sbjct: 102 -TLDEFLFSDLQALEVLLLYNNHIV 125
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 1e-05
Identities = 34/143 (23%), Positives = 58/143 (40%), Gaps = 17/143 (11%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSI-GKMQGLRLLDVSSNN 68
LHSL +S N + + + +P L Y+++S N + + +Q L +L + +N+
Sbjct: 66 LHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNH 123
Query: 69 FAGELSQSLVINCF----SLEWLDLSNNN---FVGQIFPNYMNLTRLWALYLYNNNFSGK 121
+ N F L+ L LS N F ++ + L +L L L +N
Sbjct: 124 I-----VVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178
Query: 122 IKDGL--LRSTELMVLDISNNRL 142
L L + L + NN L
Sbjct: 179 PLTDLQKLPAWVKNGLYLHNNPL 201
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 5e-05
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
Query: 359 LDLSNNELTGDIPSEI-GDLQNIHGLNLSHNFLSGSIPE----SFSNLKMIESLDLSHNK 413
L L NN + + D+ + L LS N +S P + L + LDLS NK
Sbjct: 117 LLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNK 174
Query: 414 LNGQIPPQLTELHSLSTFDVSYNN 437
L L +L + + +N
Sbjct: 175 LKKLPLTDLQKLPAWVKNGLYLHN 198
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 2e-13
Identities = 47/195 (24%), Positives = 74/195 (37%), Gaps = 24/195 (12%)
Query: 48 NIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTR 107
++P +L +S N S + ++ L L+L L
Sbjct: 28 DLPKD------TTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPV 78
Query: 108 LWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNF---STLQILSMSKN 164
L L L +N + L VLD+S NRL+ +P G LQ L + N
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPL--GALRGLGELQELYLKGN 134
Query: 165 LLEGNIPVQ-FNNLASLQILNISENNLSGSMIST---LNLSSVEHLYLQNNALGGSIPNT 220
L+ +P L+ L+++ NNL + + L +++ L LQ N+L +IP
Sbjct: 135 ELK-TLPPGLLTPTPKLEKLSLANNNL--TELPAGLLNGLENLDTLLLQENSL-YTIPKG 190
Query: 221 FFRGSALETLDLRIN 235
FF L L N
Sbjct: 191 FFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 63.2 bits (154), Expect = 4e-11
Identities = 45/180 (25%), Positives = 71/180 (39%), Gaps = 28/180 (15%)
Query: 111 LYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNI 170
L+L N L+ T L L++ L+ + G L L +S N L+ ++
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQLQ-SL 92
Query: 171 PVQFNNLASLQILNISENNLSGSMISTL------NLSSVEHLYLQNNALGGSIPNTFFRG 224
P+ L +L +L++S N +++L L ++ LYL+ N L ++P
Sbjct: 93 PLLGQTLPALTVLDVSFNR-----LTSLPLGALRGLGELQELYLKGNEL-KTLPPGLLTP 146
Query: 225 -SALETLDLRINEHS-----------NLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHN 272
LE L L N + NL TLLL+ N L IP L + N
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 1e-10
Identities = 38/164 (23%), Positives = 61/164 (37%), Gaps = 19/164 (11%)
Query: 129 STELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISEN 188
+ ++ L+ +P IL +S+NLL L LN+
Sbjct: 9 VASHLEVNCDKRNLT-ALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65
Query: 189 NLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINE-----------H 237
L+ + L + L L +N L S+P AL LD+ N
Sbjct: 66 ELT-KLQVDGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123
Query: 238 SNLRTLLLRGNYLQGPIPHQLC-HLRKLGIMDISHNRLNGSIPA 280
L+ L L+GN L+ +P L KL + +++N L +PA
Sbjct: 124 GELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNLT-ELPA 165
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 4e-05
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
L+L ELT + + G L + L+LSHN L S+P L + LD+S N+L +
Sbjct: 60 LNLDRAELT-KLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SL 115
Query: 419 PP----QLTELHSLSTFDVSYNNLS 439
P L EL L + N L
Sbjct: 116 PLGALRGLGELQELY---LKGNELK 137
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 8e-05
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 351 DILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPES-FSNLKMIESLDL 409
L ++ LDLS+N+L +P L + L++S N L+ S+P L ++ L L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 410 SHNKLNGQIPPQL-TELHSLSTFDVSYNNLS 439
N+L +PP L T L ++ NNL+
Sbjct: 132 KGNELK-TLPPGLLTPTPKLEKLSLANNNLT 161
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 1e-04
Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 11/100 (11%)
Query: 359 LDLSNNELTGDIPSEIGD-LQNIHGLNLSHNFLSGSIPES-FSNLKMIESLDLSHNKLNG 416
LD+S N LT +P L + L L N L ++P + +E L L++N L
Sbjct: 105 LDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT- 161
Query: 417 QIPPQL-TELHSLSTFDVSYNNLSGPIPDKEQFSTFDESS 455
++P L L +L T + N+L IP F
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYT-IPK----GFFGSHL 196
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 19/82 (23%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 359 LDLSNNELTGDIPSEI-GDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 417
++ LT +P ++ D L+LS N L + + L+L +L
Sbjct: 15 VNCDKRNLT-ALPPDLPKDTTI---LHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--T 68
Query: 418 IPPQLTELHSLSTFDVSYNNLS 439
L L T D+S+N L
Sbjct: 69 KLQVDGTLPVLGTLDLSHNQLQ 90
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 7e-04
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 359 LDLSNNELTGDIPSEIGD-LQNIHGLNLSHNFLSGSIPES-FSNLKMIESLDLSHNKLNG 416
L L NEL +P + + L+L++N L+ +P + L+ +++L L N L
Sbjct: 129 LYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT 186
Query: 417 QIPPQLTELHSLSTFDVSYN 436
IP H L + N
Sbjct: 187 -IPKGFFGSHLLPFAFLHGN 205
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 4e-13
Identities = 30/211 (14%), Positives = 81/211 (38%), Gaps = 14/211 (6%)
Query: 9 GLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSI-GKMQGLRLLDVSSN 67
+L + +P + LP + + +S + + S + + +++ +
Sbjct: 32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90
Query: 68 NFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYM---NLTRLWALYLYNNNFSGKIKD 124
+ + L++L + N ++FP+ + + L + +N + I
Sbjct: 91 RNLTYIDPDALKELPLLKFLGIFNTGL--KMFPDLTKVYSTDIFFILEITDNPYMTSIPV 148
Query: 125 GLLR--STELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQ-FNNLAS-L 180
+ E + L + NN + + + N + L + ++KN I F + S
Sbjct: 149 NAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGP 207
Query: 181 QILNISENNLSGSMISTLNLSSVEHLYLQNN 211
+L++S+ ++ + + + L ++ L +N
Sbjct: 208 SLLDVSQTSV--TALPSKGLEHLKELIARNT 236
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 5e-13
Identities = 36/226 (15%), Positives = 70/226 (30%), Gaps = 45/226 (19%)
Query: 58 GLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNY-MNLTRLWALYLYNN 116
+ L + + + N ++ + +S + + Q+ + NL+++ + + N
Sbjct: 32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90
Query: 117 NFSGKIKDGLLRS-TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFN 175
I L+ L L I N L P
Sbjct: 91 RNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTK----------------------VY 127
Query: 176 NLASLQILNISENN----LSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLD 231
+ IL I++N + + L + L L NN S+ F G+ L+ +
Sbjct: 128 STDIFFILEITDNPYMTSIPVNAFQGLC-NETLTLKLYNNGFT-SVQGYAFNGTKLDAVY 185
Query: 232 LRINEH-------------SNLRTLLLRGNYLQGPIPHQLCHLRKL 264
L N++ S L + + L HL++L
Sbjct: 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKEL 231
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 4e-07
Identities = 30/154 (19%), Positives = 55/154 (35%), Gaps = 29/154 (18%)
Query: 135 LDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQ-FNNLASLQILNISENNLSGS 193
++ + IPS + Q L + + L IP F+NL ++ + +S +
Sbjct: 16 FRVTCKDIQ-RIPSLPPS---TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDV---- 66
Query: 194 MISTL------NLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRINEHSNLRTLLLR 246
+ L NLS V H+ ++N I + L+ L + L+
Sbjct: 67 TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT---GLKMF--- 120
Query: 247 GNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPA 280
P ++ I++I+ N SIP
Sbjct: 121 ------PDLTKVYSTDIFFILEITDNPYMTSIPV 148
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-06
Identities = 41/269 (15%), Positives = 83/269 (30%), Gaps = 67/269 (24%)
Query: 183 LNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRINEH---- 237
++ ++ I +L S + L L L +IP+ F + + + I+
Sbjct: 16 FRVTCKDIQR--IPSL-PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQL 71
Query: 238 --------SNLRTLLLRGN-YLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFS 288
S + + +R L P L L L + I + L P
Sbjct: 72 ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPD-------- 122
Query: 289 RVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESY 348
++ Y++ + +L+ D + ++ F
Sbjct: 123 ----------------------LTKVYSTDIFFILEITDNPYMTSIPVNAFQ-------- 152
Query: 349 KGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPE-SFSNLK-MIES 406
+ L L NN T + + + + L+ N I + +F +
Sbjct: 153 --GLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL 209
Query: 407 LDLSHNKLNGQIPP----QLTELHSLSTF 431
LD+S + +P L EL + +T+
Sbjct: 210 LDVSQTSVT-ALPSKGLEHLKELIARNTW 237
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 6e-13
Identities = 29/185 (15%), Positives = 69/185 (37%), Gaps = 12/185 (6%)
Query: 32 LPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSN 91
+ + ++S + +M L + +++ N + + +++ L ++N
Sbjct: 22 FKAYLNGLLGQSS---TANITEAQMNSLTYITLANINVT---DLTGIEYAHNIKDLTINN 75
Query: 92 NNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMG 151
+ + L+ L L + + + L T L +LDIS++ I + +
Sbjct: 76 IHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133
Query: 152 NFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQN 210
+ + +S N +I L L+ LNI + + + + + LY +
Sbjct: 134 TLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFS 190
Query: 211 NALGG 215
+GG
Sbjct: 191 QTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 2e-11
Identities = 24/168 (14%), Positives = 55/168 (32%), Gaps = 23/168 (13%)
Query: 83 SLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKD--GLLRSTELMVLDISNN 140
SL ++ L+N N + L + N + + + L L I
Sbjct: 45 SLTYITLANINV--TDLTGIEYAHNIKDLTINNI----HATNYNPISGLSNLERLRIMGK 98
Query: 141 RLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNL 200
++ + ++L +L +S + + +I + N L + +++S N ++ L
Sbjct: 99 DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTL 158
Query: 201 SSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGN 248
++ L +Q + + I + L L
Sbjct: 159 PELKSLNIQFDGVHDYRG---------------IEDFPKLNQLYAFSQ 191
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 9e-11
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
L + ++T D + L ++ L++SH+ SI + L + S+DLS+N I
Sbjct: 93 LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152
Query: 419 PPQLTELHSLSTFDVSYNNLS 439
P L L L + ++ ++ +
Sbjct: 153 MP-LKTLPELKSLNIQFDGVH 172
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 2e-09
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
L ++N T + + I L N+ L + ++ + S L + LD+SH+ + I
Sbjct: 71 LTINNIHAT-NY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128
Query: 419 PPQLTELHSLSTFDVSYNNL 438
++ L +++ D+SYN
Sbjct: 129 LTKINTLPKVNSIDLSYNGA 148
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 1e-06
Identities = 19/111 (17%), Positives = 44/111 (39%), Gaps = 5/111 (4%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
L L I + N+ L L ++IS ++ + +I + I + + +D+S N
Sbjct: 90 LERLRIMGKDVTSDKIPNLS-GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSG 120
++ + L+ L++ + + + +L LY ++ G
Sbjct: 149 ITDIMP--LKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 3e-06
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
+ L+N +T D+ + I NI L +++ + S L +E L + +
Sbjct: 49 ITLANINVT-DL-TGIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDK 104
Query: 419 PPQLTELHSLSTFDVSYNNLSGPIPDK 445
P L+ L SL+ D+S++ I K
Sbjct: 105 IPNLSGLTSLTLLDISHSAHDDSILTK 131
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 3e-05
Identities = 22/135 (16%), Positives = 48/135 (35%), Gaps = 21/135 (15%)
Query: 152 NFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQN 210
F + ++ + + SL + ++ N++ ++ + +++ L + N
Sbjct: 21 TFKAYLNGLLGQS---STANITEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINN 75
Query: 211 NALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDIS 270
+ + L SNL L + G + L L L ++DIS
Sbjct: 76 IHATNY--------NPISGL-------SNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120
Query: 271 HNRLNGSIPACITNM 285
H+ + SI I +
Sbjct: 121 HSAHDDSILTKINTL 135
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 18/132 (13%), Positives = 49/132 (37%), Gaps = 18/132 (13%)
Query: 150 MGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYL 208
++L ++++ + ++ +++ L I+ + + + + LS++E L +
Sbjct: 40 EAQMNSLTYITLANINVTDLTGIE--YAHNIKDLTINNIHATN--YNPISGLSNLERLRI 95
Query: 209 QNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMD 268
+ L L ++L L + + I ++ L K+ +D
Sbjct: 96 MGKDVTSDKI------PNLSGL-------TSLTLLDISHSAHDDSILTKINTLPKVNSID 142
Query: 269 ISHNRLNGSIPA 280
+S+N I
Sbjct: 143 LSYNGAITDIMP 154
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 1e-12
Identities = 58/325 (17%), Positives = 100/325 (30%), Gaps = 64/325 (19%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSF--EG--NIPSSIGKMQGLRLLDVS 65
+ SLDI S + +L + + + +I S++ L L++
Sbjct: 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64
Query: 66 SNNF----AGELSQSLVINCFSLEWLDLSNNNF----VGQIFPNYMNLTRLWALYLYNNN 117
SN + Q L ++ L L N G + L L L+L +N
Sbjct: 65 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124
Query: 118 FSGK----IKDGLLR-STELMVLDISNNRLS----GHIPSWMGNFSTLQILSMSKNLLEG 168
+ +GLL L L + LS + S + + L++S N +
Sbjct: 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI-N 183
Query: 169 NIPVQF------NNLASLQILNISENNLSGSMISTL-----NLSSVEHLYLQNNALGGS- 216
V+ ++ L+ L + ++ L + +S+ L L +N LG
Sbjct: 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243
Query: 217 ----IPNTFFRGSALETLDLRINE---------------HSNLRTLLLRGNYLQGP---- 253
P S L TL + +L+ L L GN L
Sbjct: 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303
Query: 254 ----IPHQLCHLRKLGIMDISHNRL 274
+ C L L +
Sbjct: 304 LCETLLEPGCQLESL---WVKSCSF 325
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 1e-10
Identities = 53/301 (17%), Positives = 94/301 (31%), Gaps = 65/301 (21%)
Query: 10 LHSLDISRNSFSGK----LPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKM----QGLRL 61
L L +S N L + + +L + + S + + +
Sbjct: 115 LQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKE 174
Query: 62 LDVSSNNF----AGELSQSLVINCFSLEWLDLSNNN-------FVGQIFPNYMNLTRLWA 110
L VS+N+ L Q L + LE L L + + I + +L
Sbjct: 175 LTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE--- 231
Query: 111 LYLYNNNFSGK----IKDGLLRS-TELMVLDISNNRLS----GHIPSWMGNFSTLQILSM 161
L L +N + GLL + L L I ++ G + + +L+ LS+
Sbjct: 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL 291
Query: 162 SKNLLEGN-----IPVQFNNLASLQILNISENNLS-------GSMISTLNLSSVEHLYLQ 209
+ N L L+ L + + + S+++ + L +
Sbjct: 292 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA--QNRFLLELQIS 349
Query: 210 NNALGGSIPNTFFRG-----SALETLDLRINE---------------HSNLRTLLLRGNY 249
NN L + +G S L L L + + +LR L L N
Sbjct: 350 NNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409
Query: 250 L 250
L
Sbjct: 410 L 410
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 58/402 (14%), Positives = 116/402 (28%), Gaps = 96/402 (23%)
Query: 83 SLEWLDLSNNNF----VGQIFPNYMNLTRLWALYLYNNNFSGK----IKDGLLRSTELMV 134
++ LD+ ++ P + L + + I L + L
Sbjct: 4 DIQSLDIQCEELSDARWAELLPLLQQCQV---VRLDDCGLTEARCKDISSALRVNPALAE 60
Query: 135 LDISNNRLSG----HIPSWMGNFS-TLQILSMSKNLL--EG--NIPVQFNNLASLQILNI 185
L++ +N L + + S +Q LS+ L G + L +LQ L++
Sbjct: 61 LNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 120
Query: 186 SENNLSGSMISTL------NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSN 239
S+N L + + L +E L L+ +L + S L +
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL--ASVLRA-------KPD 171
Query: 240 LRTLLLRGNYLQGP--------IPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVE 291
+ L + N + + C L L + + + ++ S
Sbjct: 172 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEAL---KLESCGVTSDNCRDLCGIVAS--- 225
Query: 292 NGYLYGFDIVLRMYLDDAYVSNYYNSTV-ELLLDGNDGRMLGALVAVNFMTKNRYESYKG 350
+++ EL L N LG + + S +
Sbjct: 226 ------------------------KASLRELALGSNK---LGDVGMAELCPGLLHPSSRL 258
Query: 351 DILELMAGLDLSNNELTGD----IPSEIGDLQNIHGLNLSHNFLSGS----IPES-FSNL 401
L + +T + + +++ L+L+ N L + E+
Sbjct: 259 RTL------WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPG 312
Query: 402 KMIESLDLSHNKLNGQ----IPPQLTELHSLSTFDVSYNNLS 439
+ESL + L + L +S N L
Sbjct: 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 36/213 (16%), Positives = 73/213 (34%), Gaps = 32/213 (15%)
Query: 10 LHSLDISRNSFSGK----LPQNMGIVLPKLVYMNISKNSFE----GNIPSSIGKMQGLRL 61
L L + N L + +L + I + G++ + + L+
Sbjct: 229 LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKE 288
Query: 62 LDVSSNNF----AGELSQSLVINCFSLEWLDLSNNNF----VGQIFPNYMNLTRLWALYL 113
L ++ N A L ++L+ LE L + + +F L L +
Sbjct: 289 LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI 348
Query: 114 YNNNFSGK----IKDGLLRS-TELMVLDISNNRLS----GHIPSWMGNFSTLQILSMSKN 164
NN + GL + + L VL +++ +S + + + +L+ L +S N
Sbjct: 349 SNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408
Query: 165 LLEGNIPVQF------NNLASLQILNISENNLS 191
L G+ + L+ L + + S
Sbjct: 409 CL-GDAGILQLVESVRQPGCLLEQLVLYDIYWS 440
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 2e-12
Identities = 44/256 (17%), Positives = 90/256 (35%), Gaps = 21/256 (8%)
Query: 9 GLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSI-GKMQGLRLLDVSSN 67
L + + L + IS+N I + + + L + +
Sbjct: 31 NAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89
Query: 68 NFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYM--NLTRLWALYLYNNNFSGKIKDG 125
N ++ N +L++L +SN + P+ + + L + +N I+
Sbjct: 90 NNLLYINPEAFQNLPNLQYLLISNTGI--KHLPDVHKIHSLQKVLLDIQDNINIHTIERN 147
Query: 126 LLR--STELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGN----IPVQ-FNNLA 178
S E ++L ++ N + I + F+ Q+ + NL + N +P F+ +
Sbjct: 148 SFVGLSFESVILWLNKNGIQ-EIHN--SAFNGTQLDEL--NLSDNNNLEELPNDVFHGAS 202
Query: 179 SLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHS 238
IL+IS + + + L +++ L ++ +P T + AL L H
Sbjct: 203 GPVILDISRTRI--HSLPSYGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPSHC 259
Query: 239 NLRTLLLRGNYLQGPI 254
R PI
Sbjct: 260 CAFANWRRQISELHPI 275
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 3e-09
Identities = 45/325 (13%), Positives = 93/325 (28%), Gaps = 46/325 (14%)
Query: 178 ASLQILNISENNLSGSMIST---LNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRI 234
+ L L +I +E + + N + I F
Sbjct: 30 RNAIELRFVLTKLR--VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN---------- 77
Query: 235 NEHSNLRTL-LLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENG 293
L + + + N L P +L L + IS+ + +P ++
Sbjct: 78 --LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPD---VHKIHSLQKV 131
Query: 294 YLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDIL 353
L D + ++ +V L L+ N + + F +
Sbjct: 132 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA---F-----------NGT 177
Query: 354 ELMAGLDLSNNELTGDIPSEI-GDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHN 412
+L NN L ++P+++ L++S + NLK + + +
Sbjct: 178 QLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 236
Query: 413 KLNGQIPPQLTELHSLSTFDVSYN----NLSGPIPDKEQFSTFDESSYRGNLFLCGPAIN 468
K ++P L +L +L ++Y + + S
Sbjct: 237 K---KLPT-LEKLVALMEASLTYPSHCCAFANWRRQISELHPICNKSILRQEVDYMTQAR 292
Query: 469 KGCTNLPELLEPSSKGAEDESEVDL 493
++L E E S D + +
Sbjct: 293 GQRSSLAEDNESSYSRGFDMTYTEF 317
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 4e-05
Identities = 16/80 (20%), Positives = 31/80 (38%), Gaps = 4/80 (5%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
+++T +IPS++ +N L L +FS +E +++S N + I
Sbjct: 14 FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70
Query: 419 PPQ-LTELHSLSTFDVSYNN 437
+ L L + N
Sbjct: 71 EADVFSNLPKLHEIRIEKAN 90
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 3e-12
Identities = 49/236 (20%), Positives = 90/236 (38%), Gaps = 35/236 (14%)
Query: 32 LPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSN 91
+ + N+ K S + ++ + + ++++ S + ++ L L+
Sbjct: 23 FAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLNG 77
Query: 92 NNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKD--GLLRSTELMVLDISNNRLSGHIPSW 149
N + I P NL L L+L N K+KD L +L L + +N +S I
Sbjct: 78 NK-LTDIKPLA-NLKNLGWLFLDEN----KVKDLSSLKDLKKLKSLSLEHNGIS-DING- 129
Query: 150 MGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYL 208
+ + L+ L + N + +I V + L L L++ +N + S I L L+ +++LYL
Sbjct: 130 LVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYL 185
Query: 209 QNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKL 264
N + S L L NL L L + +L
Sbjct: 186 SKNHI-----------SDLRALA----GLKNLDVLELFSQECLNKPINHQSNLVVP 226
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 1e-10
Identities = 46/241 (19%), Positives = 95/241 (39%), Gaps = 19/241 (7%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
++ + S + + QN L + + + + + ++ I + + L ++ N
Sbjct: 26 TIKDNLKKKSVTDAVTQNE---LNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKL 80
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRS 129
+ N +L WL L N + + +L +L +L L +N S I +GL+
Sbjct: 81 T---DIKPLANLKNLGWLFLDENKV--KDLSSLKDLKKLKSLSLEHNGIS-DI-NGLVHL 133
Query: 130 TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENN 189
+L L + NN+++ + + + L LS+ N + +I L LQ L +S+N+
Sbjct: 134 PQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNH 189
Query: 190 LSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGN 248
+S + L L +++ L L + N T+ + G+
Sbjct: 190 IS--DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGD 247
Query: 249 Y 249
Y
Sbjct: 248 Y 248
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 4e-08
Identities = 40/196 (20%), Positives = 78/196 (39%), Gaps = 28/196 (14%)
Query: 80 NCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISN 139
+L + + N L + + N++ + G+ + L ++
Sbjct: 22 AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNG 77
Query: 140 NRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL- 198
N+L+ I + N L L + +N ++ ++ +L L+ L++ N +S I+ L
Sbjct: 78 NKLT-DIKP-LANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGIS--DINGLV 131
Query: 199 NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQL 258
+L +E LYL NN + + + L + L TL L N + +P L
Sbjct: 132 HLPQLESLYLGNNKI-----------TDITVLS----RLTKLDTLSLEDNQISDIVP--L 174
Query: 259 CHLRKLGIMDISHNRL 274
L KL + +S N +
Sbjct: 175 AGLTKLQNLYLSKNHI 190
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 7e-07
Identities = 32/187 (17%), Positives = 68/187 (36%), Gaps = 27/187 (14%)
Query: 89 LSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPS 148
++ + QIF + L + + + L + + +N+ + +
Sbjct: 8 ITVPTPIKQIFSDD-AFAETIKDNLKKKSVTDAVTQNEL--NSIDQIIANNSDIK-SVQG 63
Query: 149 WMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLY 207
+ + L ++ N L +I NL +L L + EN + +S+L +L ++ L
Sbjct: 64 -IQYLPNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDENKVK--DLSSLKDLKKLKSLS 118
Query: 208 LQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIM 267
L++N + I + L +L L N + L L KL +
Sbjct: 119 LEHNGIS-DING--------------LVHLPQLESLYLGNNKITDITV--LSRLTKLDTL 161
Query: 268 DISHNRL 274
+ N++
Sbjct: 162 SLEDNQI 168
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 7e-05
Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
+L +T + +L +I + +++ + S+ + L + L L+ NKL I
Sbjct: 29 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLT-DI 83
Query: 419 PPQLTELHSLSTFDVSYNNLS 439
P L L +L + N +
Sbjct: 84 KP-LANLKNLGWLFLDENKVK 103
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
L L +N ++ DI + L + L L +N ++ S L +++L L N+++ I
Sbjct: 117 LSLEHNGIS-DING-LVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQIS-DI 171
Query: 419 PPQLTELHSLSTFDVSYNNLS 439
P L L L +S N++S
Sbjct: 172 VP-LAGLTKLQNLYLSKNHIS 191
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 29/163 (17%), Positives = 57/163 (34%), Gaps = 17/163 (10%)
Query: 32 LPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQ-SLVINCFSLEWLDLS 90
L KL +++ N +I + + + L L + +N ++ +++ L+ L L
Sbjct: 111 LKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNK----ITDITVLSRLTKLDTLSLE 164
Query: 91 NNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKD--GLLRSTELMVLDISNNRLSGHIPS 148
+N LT+L LYL N I D L L VL++ + +
Sbjct: 165 DNQI--SDIVPLAGLTKLQNLYLSKN----HISDLRALAGLKNLDVLELFSQECLNKPIN 218
Query: 149 WMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLS 191
N + + L P ++ + N+ +
Sbjct: 219 HQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLPE 259
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
L L+ N+LT DI + +L+N+ L L N + + S +LK ++SL L HN ++ I
Sbjct: 73 LFLNGNKLT-DI-KPLANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGIS-DI 127
Query: 419 PPQLTELHSLSTFDVSYNNLS 439
L L L + + N ++
Sbjct: 128 NG-LVHLPQLESLYLGNNKIT 147
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 8e-10
Identities = 51/225 (22%), Positives = 92/225 (40%), Gaps = 52/225 (23%)
Query: 48 NIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPN--YMNL 105
N+P S + LD+S N L + L+ LDLS Q + Y +L
Sbjct: 25 NLPFS------TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSL 75
Query: 106 TRLWALYLYNN---NFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWM-GNFSTLQILSM 161
+ L L L N + + GL + L L L+ + ++ G+ TL+ L++
Sbjct: 76 SHLSTLILTGNPIQSLALGAFSGL---SSLQKLVAVETNLA-SLENFPIGHLKTLKELNV 131
Query: 162 SKNLLEGNIPVQ--FNNLASLQILNISENNLS-------------GSMISTLNLS----- 201
+ NL++ + + F+NL +L+ L++S N + + +L+LS
Sbjct: 132 AHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190
Query: 202 ----------SVEHLYLQNNALGGSIPNTFFRG-SALETLDLRIN 235
++ L L N L S+P+ F ++L+ + L N
Sbjct: 191 FIQPGAFKEIRLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 6e-09
Identities = 55/283 (19%), Positives = 90/283 (31%), Gaps = 71/283 (25%)
Query: 138 SNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMIST 197
IP + + L +S N L F + LQ+L++S I T
Sbjct: 15 MELNFY-KIPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-----IQT 66
Query: 198 L------NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQ 251
+ +LS + L L N + S+ F G S+L+ L+ L
Sbjct: 67 IEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGL------------SSLQKLVAVETNLA 113
Query: 252 GPIPHQL-CHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAY 310
+ + HL+ L ++++HN + S FS + N L
Sbjct: 114 S-LENFPIGHLKTLKELNVAHNLIQ-SFK---LPEYFSNLTN---------LE------- 152
Query: 311 VSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDI 370
L L N + + + + L LDLS N + I
Sbjct: 153 ---------HLDLSSNKIQSIYCTDLRV-LHQMPL---------LNLSLDLSLNPMN-FI 192
Query: 371 PSEIGDLQNIHGLNLSHNFLSGSIPE-SFSNLKMIESLDLSHN 412
+ L L N L S+P+ F L ++ + L N
Sbjct: 193 QPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 1e-08
Identities = 38/172 (22%), Positives = 67/172 (38%), Gaps = 26/172 (15%)
Query: 130 TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQ-FNNLASLQILNISEN 188
LD+S N L +F LQ+L +S+ ++ I + +L+ L L ++ N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86
Query: 189 NLSGSMIST---LNLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRINEH------- 237
+ ++ LSS++ L L S+ N L+ L++ N
Sbjct: 87 PIQ--SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPE 143
Query: 238 -----SNLRTLLLRGNYLQGPIPHQLCHLRKLGIM----DISHNRLNGSIPA 280
+NL L L N +Q L L ++ ++ D+S N +N I
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQP 194
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 6e-05
Identities = 38/190 (20%), Positives = 66/190 (34%), Gaps = 44/190 (23%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSI-GKMQGLRLLDVSSNN 68
L +L ++ N L L L + + + ++ + G ++ L+ L+V+ N
Sbjct: 78 LSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNL 135
Query: 69 FAGELSQSLVI-----NCFSLEWLDLSNNNFV---GQIFPNYMNLTRLWA-LYLYNNNFS 119
QS + N +LE LDLS+N + L L L N +
Sbjct: 136 I-----QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190
Query: 120 GKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQ-FNNLA 178
I+ G + L L + N+L ++P F+ L
Sbjct: 191 -FIQPGAFKEIRLKELALDTNQLK-------------------------SVPDGIFDRLT 224
Query: 179 SLQILNISEN 188
SLQ + + N
Sbjct: 225 SLQKIWLHTN 234
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 1e-09
Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 29/168 (17%)
Query: 83 SLEWLDLSNNNFVGQIFPN-YMNLTRLWALYLYNN---NFSGKIKDGLLRSTELMVLDIS 138
+ LDL +N + + LT+L LYL +N I L L L ++
Sbjct: 38 DTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKEL---KNLETLWVT 93
Query: 139 NNRLSGHIPSWMGNF---STLQILSMSKNLLEGNIPVQ-FNNLASLQILNISENNLSGSM 194
+N+L +P G F L L + +N L+ ++P + F++L L L++ N L
Sbjct: 94 DNKLQ-ALPI--GVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ--- 146
Query: 195 ISTL------NLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRIN 235
+L L+S++ L L NN L +P F + L+TL L N
Sbjct: 147 --SLPKGVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNN 191
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 5e-07
Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 30/171 (17%)
Query: 129 STELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISEN 188
+ +D S+ +L+ IPS + + L + N L F+ L L++L +++N
Sbjct: 15 NNNKNSVDCSSKKLTA-IPS--NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN 71
Query: 189 NLSGSMISTL------NLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRINEHS--- 238
L TL L ++E L++ +N L ++P F L L L N+
Sbjct: 72 KL-----QTLPAGIFKELKNLETLWVTDNKL-QALPIGVFDQLVNLAELRLDRNQLKSLP 125
Query: 239 --------NLRTLLLRGNYLQGPIPHQLC-HLRKLGIMDISHNRLNGSIPA 280
L L L N LQ +P + L L + + +N+L +P
Sbjct: 126 PRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLK-RVPE 174
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 2e-09
Identities = 40/229 (17%), Positives = 77/229 (33%), Gaps = 47/229 (20%)
Query: 30 IVLPKLVYMNISKNSFEGN----IPSSIGKMQGLRLLDVSSNNF----AGELSQSL---- 77
+ PKL + +S N+F + + K L L + +N +++++L
Sbjct: 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELA 150
Query: 78 ----VINCFSLEWLDLSNNNF-------VGQIFPNYMNLTRLWALYLYNNNFSGK----- 121
N L + N + F ++ L + + N +
Sbjct: 151 VNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH---TVKMVQNGIRPEGIEHL 207
Query: 122 IKDGLLRSTELMVLDISNNRLSG----HIPSWMGNFSTLQILSMSKNLL--EGNIPV--- 172
+ +GL EL VLD+ +N + + + ++ L+ L ++ LL G V
Sbjct: 208 LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA 267
Query: 173 -QFNNLASLQILNISENNLSGSMISTL------NLSSVEHLYLQNNALG 214
LQ L + N + + TL + + L L N
Sbjct: 268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 4e-09
Identities = 53/321 (16%), Positives = 106/321 (33%), Gaps = 67/321 (20%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVL---PKLVYMNISKNSF--EG--NIPSSIGKMQGLRLL 62
+ + ++ + + +++ VL + + +S N+ E + +I + L +
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65
Query: 63 DVSSNNF----------AGELSQSLVINCFSLEWLDLSNNNF----VGQIFPNYMNLTRL 108
+ S L Q+L+ L + LS+N F + T L
Sbjct: 66 EFSDIFTGRVKDEIPEALRLLLQALLKCP-KLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124
Query: 109 WALYLYNNNFS-------------GKIKDGLLRSTELMVLDISNNRLSG----HIPSWMG 151
LYL+NN + + L + NRL
Sbjct: 125 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184
Query: 152 NFSTLQILSMSKNLL-----EGNIPVQFNNLASLQILNISENNLSGSMISTL-----NLS 201
+ L + M +N + E + L++L++ +N + S L +
Sbjct: 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 244
Query: 202 SVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGP-------- 253
++ L L + L RG+A E+ L+TL L+ N ++
Sbjct: 245 NLRELGLNDCLLSA-------RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV 297
Query: 254 IPHQLCHLRKLGIMDISHNRL 274
I ++ L L +++ NR
Sbjct: 298 IDEKMPDLLFL---ELNGNRF 315
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 4e-06
Identities = 35/239 (14%), Positives = 73/239 (30%), Gaps = 60/239 (25%)
Query: 82 FSLEWLDLSNNNF----VGQIFPNYMNLTRLWALYLYNNNFSGK----IKDGLLRSTELM 133
FS+E L + +F + + + L N + + + + +L
Sbjct: 4 FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63
Query: 134 VLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGS 193
+ + S+ +I + LL+ L + +S+N +
Sbjct: 64 IAEFSDIFT---------GRVKDEIPEALRLLLQA-----LLKCPKLHTVRLSDNAFGPT 109
Query: 194 MISTL-----NLSSVEHLYLQNNALG-------------GSIPNTFFRGSALETLDLRIN 235
L + +EHLYL NN LG ++ L ++ N
Sbjct: 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169
Query: 236 ---------------EHSNLRTLLLRGNYL-----QGPIPHQLCHLRKLGIMDISHNRL 274
H L T+ + N + + + L + ++L ++D+ N
Sbjct: 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 5e-06
Identities = 35/225 (15%), Positives = 67/225 (29%), Gaps = 47/225 (20%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPK---LVYMNISKNSF-------------EGNIPSSI 53
LH++ +S N+F + + L K L ++ + N E +
Sbjct: 96 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKA 155
Query: 54 GKMQGLRLLDVSSNNF----AGELSQSLVINCFSLEWLDLSNNNF--------VGQIFPN 101
LR + N E +++ + L + + N + +
Sbjct: 156 KNAPPLRSIICGRNRLENGSMKEWAKTFQSHR-LLHTVKMVQNGIRPEGIEHLLLEGLAY 214
Query: 102 YMNLTRLWALYLYNNNFSGK----IKDGLLRSTELMVLDISNNRLSG----HIPS--WMG 151
L L L +N F+ + L L L +++ LS +
Sbjct: 215 CQELKVLD---LQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271
Query: 152 NFSTLQILSMSKNLLEGNIPVQF-----NNLASLQILNISENNLS 191
LQ L + N +E + + L L ++ N S
Sbjct: 272 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 58.6 bits (141), Expect = 3e-09
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
L L++ +LT + + L + L+LSHN L ++P + + L+ +E L S N L +
Sbjct: 446 LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NV 501
Query: 419 PPQLTELHSLSTFDVSYNNLS 439
+ L L + N L
Sbjct: 502 DG-VANLPRLQELLLCNNRLQ 521
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 54.0 bits (129), Expect = 8e-08
Identities = 43/224 (19%), Positives = 73/224 (32%), Gaps = 41/224 (18%)
Query: 50 PSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLW 109
+ L ++S + QS + +C L+ L+ N + I L L
Sbjct: 342 CRDSATDEQLFRCELSVEKS--TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLL 399
Query: 110 AL--------YLYNNNFSGKIKDGLLRSTELM-------------VLDISNNRLSGHIPS 148
L + LRS L+ VL +++ L+ +
Sbjct: 400 YEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH 458
Query: 149 WMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLY 207
+ + L +S N L +P L L++L S+N L + + NL ++ L
Sbjct: 459 -LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE--NVDGVANLPRLQELL 514
Query: 208 LQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQ 251
L NN L + + L L L+GN L
Sbjct: 515 LCNNRL-----------QQSAAIQ-PLVSCPRLVLLNLQGNSLC 546
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 54.0 bits (129), Expect = 8e-08
Identities = 33/189 (17%), Positives = 63/189 (33%), Gaps = 15/189 (7%)
Query: 11 HSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLD------- 63
S S P+N +L ++ M ++ L+ +D
Sbjct: 365 QSELESCKELQELEPENKWCLLTIILLMR--ALDPLLYEKETLQYFSTLKAVDPMRAAYL 422
Query: 64 VSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIK 123
+ + L + + L L++ + + + L + L L +N +
Sbjct: 423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR-ALP 479
Query: 124 DGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEG-NIPVQFNNLASLQI 182
L L VL S+N L ++ + N LQ L + N L+ + L +
Sbjct: 480 PALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVL 537
Query: 183 LNISENNLS 191
LN+ N+L
Sbjct: 538 LNLQGNSLC 546
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 3e-05
Identities = 48/330 (14%), Positives = 105/330 (31%), Gaps = 27/330 (8%)
Query: 110 ALYLYNNNFSGKI-KDGLLRSTE------LMVLDISNNRLSGHIPSWMGNFSTLQILSMS 162
A + N+ S LL E + + LS + S + L +
Sbjct: 218 AFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLM 277
Query: 163 KNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSI----- 217
+ ++ + + + + + S+ L + ++ +++ +
Sbjct: 278 VDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDR 337
Query: 218 ----PNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNR 273
L +L + + + L++ L LQ P L + ++ + +
Sbjct: 338 PECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDP 397
Query: 274 LNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELL-LDGNDGRMLG 332
L V+ D + +L + V + V +L L D +L
Sbjct: 398 LLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC 457
Query: 333 ALVAVNFMTK-----NRYESYKGDILELMA--GLDLSNNELTGDIPSEIGDLQNIHGLNL 385
L + +T NR + + L L S+N L ++ + +L + L L
Sbjct: 458 HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLL 515
Query: 386 SHNFLSG-SIPESFSNLKMIESLDLSHNKL 414
+N L + + + + L+L N L
Sbjct: 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 41.7 bits (97), Expect = 5e-04
Identities = 30/212 (14%), Positives = 62/212 (29%), Gaps = 20/212 (9%)
Query: 74 SQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELM 133
++ + L L++ + L + +D +L
Sbjct: 294 NRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRD-SATDEQLF 352
Query: 134 VLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGS 193
++S + + + S + + LQ L I + L L E S
Sbjct: 353 RCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLL--YEKETLQYFS 409
Query: 194 MISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGP 253
+ ++ +L + + + L L + + L L
Sbjct: 410 TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHL---------- 459
Query: 254 IPHQLCHLRKLGIMDISHNRLNGSIPACITNM 285
QL + L D+SHNRL ++P + +
Sbjct: 460 --EQLLLVTHL---DLSHNRLR-ALPPALAAL 485
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 3e-09
Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 12/132 (9%)
Query: 111 LYLYNNNFSGKIKDGLLRS-TELMVLDISNNRLSGHIPSWMGNF---STLQILSMSKNLL 166
L L NN F+ G+ + +L ++ SNN+++ I G F S + + ++ N L
Sbjct: 37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEE--GAFEGASGVNEILLTSNRL 93
Query: 167 EGNIPVQ-FNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPN-TFFR 223
E N+ + F L SL+ L + N ++ + LSSV L L +N + ++ F
Sbjct: 94 E-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI-TTVAPGAFDT 151
Query: 224 GSALETLDLRIN 235
+L TL+L N
Sbjct: 152 LHSLSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 5e-09
Identities = 28/133 (21%), Positives = 58/133 (43%), Gaps = 10/133 (7%)
Query: 87 LDLSNNNFVGQIFPNYM--NLTRLWALYLYNNNFSGKIKDGLLRS-TELMVLDISNNRLS 143
L L+NN F + + L +L + NN + I++G + + + +++NRL
Sbjct: 37 LRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLE 94
Query: 144 GHIPSWM-GNFSTLQILSMSKNLLEGNIPV-QFNNLASLQILNISENNLSGSMISTL-NL 200
+ M +L+ L + N + + F L+S+++L++ +N ++ L
Sbjct: 95 N-VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL 152
Query: 201 SSVEHLYLQNNAL 213
S+ L L N
Sbjct: 153 HSLSTLNLLANPF 165
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 359 LDLSNNELTGDIPSEI-GDLQNIHGLNLSHNFLSGSIPE-SFSNLKMIESLDLSHNKLNG 416
L L+NNE T + I L + +N S+N ++ I E +F + + L+ N+L
Sbjct: 37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLEN 95
Query: 417 QIPPQL-TELHSLSTFDVSYNNLS 439
+ ++ L SL T + N ++
Sbjct: 96 -VQHKMFKGLESLKTLMLRSNRIT 118
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 8e-04
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 359 LDLSNNELTGDIPSEIGD-LQNIHGLNLSHNFLSGSIPE-SFSNLKMIESLDLSHNKLNG 416
+ L++N L ++ ++ L+++ L L N ++ + SF L + L L N++
Sbjct: 86 ILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT- 142
Query: 417 QIPPQ-LTELHSLST 430
+ P LHSLST
Sbjct: 143 TVAPGAFDTLHSLST 157
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 8e-09
Identities = 80/514 (15%), Positives = 150/514 (29%), Gaps = 180/514 (35%)
Query: 89 LSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGL--LRSTELMVLDISNNRLSGHI 146
L N+N Q+F Y N++RL YL K++ L LR + +++D G
Sbjct: 119 LYNDN---QVFAKY-NVSRL-QPYL-------KLRQALLELRPAKNVLID-------G-- 157
Query: 147 PSWMGNF--STLQILSMSKNLLEGNIPVQFNNLASLQI--LNISENNLSGSMISTLNLSS 202
+ + + + ++ + + +I LN+ N +++ L
Sbjct: 158 ---VLGSGKTWVALDVCLSYKVQ----CKMDF----KIFWLNLKNCNSPETVLEMLQ--- 203
Query: 203 VEHLYLQNNALGGSIPNTFFRGSALETLDLRINE-HSNLRTLLLRGNYLQGPIPHQLCHL 261
L Q + PN R + LRI+ + LR LL Y + L L
Sbjct: 204 --KLLYQID------PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY-----ENCLLVL 250
Query: 262 RKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYL--DDAYVSNYYNSTV 319
++ + + F++ ++ L V+++
Sbjct: 251 L-----NVQNAKA--------------------WNAFNLSCKILLTTRFKQVTDF----- 280
Query: 320 ELLLDGNDGRMLGALVAVNFMTKNRYESY-KGDILELMAG-LDLSNNELTGDIPSEIGDL 377
L A + + + ++ L+ LD +L P E+
Sbjct: 281 -----------LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL----PREV--- 322
Query: 378 QNIHGLNLSHNFLSGSIPESFSNL-------------KMIESLDLSHNKLNGQIPPQLTE 424
+ LS I ES + K+ ++ S N L P + +
Sbjct: 323 LTTNPRRLS------IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE---PAEYRK 373
Query: 425 L-HSLSTF--DVSYNNLSGPIP-----------DKEQFSTFDESSYRGNLFLCGPAINKG 470
+ LS F IP K ++ +L P +
Sbjct: 374 MFDRLSVFPPSA-------HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP--KES 424
Query: 471 CTNLPELLEPSSKGAEDESEV--DLVAFYWSFVASCVTVMLGLLAILWVNPYWRRLWFYF 528
++P + E+E + +V Y
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD--------------------SDDL 464
Query: 529 IEDCIDLCYYW-----LFKYKLDSRFLLTFRLIF 557
I +D +Y L + R L FR++F
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTL-FRMVF 497
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 6e-06
Identities = 64/414 (15%), Positives = 123/414 (29%), Gaps = 126/414 (30%)
Query: 70 AGELSQSLVINC---FSLEWLDLSN-----------NNFVGQIFPNYMN----------- 104
A ++ S + C F + WL+L N + QI PN+ +
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 105 -------LTRLWALYLYNN-----------------NFSGKIKDGLLRSTELMVLDISNN 140
L RL Y N N S KI LL + V D +
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI---LLTTRFKQVTDFLSA 283
Query: 141 RLSGHIPS--WMGNFS---TLQILSMSKNLLEGNIPVQFNNLASLQILNISE-------- 187
+ HI + +L + ++P + ++ I+E
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 188 ---------NNLSGSMISTLN-LSSVE--HLY-----LQNNALGGSIP----NTFFRGSA 226
+ L+ + S+LN L E ++ +A IP + +
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH---IPTILLSLIWFDVI 400
Query: 227 LETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLR-KLGIMDISHNRLNGS--IPACI- 282
+ + +N+ + + IP L+ KL H + IP
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 283 TNMLFSRVENGYLYGF--------------DIVLRMYLDDAYVSNYYNSTVELLLDGNDG 328
++ L + Y Y + ++LD ++ ++ D
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ------KIRHDSTAW 514
Query: 329 RMLGALVAV--------NFMTKN--RYESYKGDILELM--AGLDLSNNELTGDI 370
G+++ ++ N +YE IL+ + +L ++ T D+
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT-DL 567
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 2e-08
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 11/131 (8%)
Query: 111 LYLYNNNFSGKIKDGLLRS-TELMVLDISNNRLSGHIPSWMGNF---STLQILSMSKNLL 166
+ L N I G +L +D+SNN++S + F +L L + N +
Sbjct: 37 IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAP--DAFQGLRSLNSLVLYGNKI 92
Query: 167 EGNIPVQ-FNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRG 224
+P F L SLQ+L ++ N ++ + +L ++ L L +N L TF
Sbjct: 93 T-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPL 151
Query: 225 SALETLDLRIN 235
A++T+ L N
Sbjct: 152 RAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPE-SFSNLKMIESLDLSHNKLNGQ 417
+ L N + P + + ++LS+N +S + +F L+ + SL L NK+ +
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-E 94
Query: 418 IPPQL-TELHSLSTFDVSYNNLS 439
+P L L SL ++ N ++
Sbjct: 95 LPKSLFEGLFSLQLLLLNANKIN 117
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 5e-04
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Query: 359 LDLSNNELTGDIPSEIGD-LQNIHGLNLSHNFLSGSIPE-SFSNLKMIESLDLSHNKLNG 416
L L N++T ++P + + L ++ L L+ N ++ + +F +L + L L NKL
Sbjct: 85 LVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQT 142
Query: 417 QIPPQLTELHSLST 430
+ L ++ T
Sbjct: 143 IAKGTFSPLRAIQT 156
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 2e-08
Identities = 38/166 (22%), Positives = 63/166 (37%), Gaps = 19/166 (11%)
Query: 51 SSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWA 110
+ ++ + +SQ ++ + N+N Q T L
Sbjct: 13 FPDPGLANAVKQNLGKQSVTDLVSQK---ELSGVQNFNGDNSNI--QSLAGMQFFTNLKE 67
Query: 111 LYLYNNNFSGKIKD--GLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEG 168
L+L +N +I D L T+L L ++ NRL ++ + L L + N L
Sbjct: 68 LHLSHN----QISDLSPLKDLTKLEELSVNRNRLK-NLNG--IPSACLSRLFLDNNELRD 120
Query: 169 NIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNAL 213
+L +L+IL+I N L I L LS +E L L N +
Sbjct: 121 TDS--LIHLKNLEILSIRNNKL--KSIVMLGFLSKLEVLDLHGNEI 162
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 4e-08
Identities = 61/321 (19%), Positives = 120/321 (37%), Gaps = 64/321 (19%)
Query: 2 QLTSAQHGLHSLDISRNSFSGKLPQNMGIVLPK----LVYMNISKNSFEGNIPSSIGKM- 56
+ TS HG+ SLD+S N+ + + +N+S NS + ++
Sbjct: 16 EFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQIL 75
Query: 57 ----QGLRLLDVSSNNF----AGELSQSLVINCFSLEWLDLSNNNF----VGQIFPNYMN 104
+ L++S N + EL ++L F++ LDL N+F + + N
Sbjct: 76 AAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSN 135
Query: 105 L-TRLWALYLYNNNFSGK----IKDGLLR-STELMVLDISNNRLSGHIPSWMGNFSTLQI 158
L + +L L N+ K + L + L++ N L + + ++
Sbjct: 136 LPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL--------ASKNCAEL 187
Query: 159 LSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL------NLSSVEHLYLQNNA 212
L AS+ L++S N L + L + V L L N
Sbjct: 188 AKF---LASIP--------ASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236
Query: 213 LGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGP-------IPHQLCHLRKLG 265
L G +LE L L + +L+T+ L + ++ + +++K+
Sbjct: 237 LH---------GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKII 287
Query: 266 IMDISHNRLNGSIPACITNML 286
++D + ++ S I+N++
Sbjct: 288 LVDKNGKEIHPSHSIPISNLI 308
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 45/279 (16%), Positives = 84/279 (30%), Gaps = 57/279 (20%)
Query: 3 LTSAQHGLHSLDISRNSFSGK----LPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKM-- 56
L + + LD+ N FS K Q + + +N+ N + ++
Sbjct: 104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILA 163
Query: 57 ---QGLRLLDVSSNNF----AGELSQSLVINCFSLEWLDLSNNNF-------VGQIFPNY 102
+ L++ NN EL++ L S+ LDLS N + IF +
Sbjct: 164 AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS- 222
Query: 103 MNLTRLWALYLYNNNFSGK----IKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQI 158
+ +L L N G +K L + + + + N S Q
Sbjct: 223 -IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIV--------KNMSKEQC 273
Query: 159 LSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL------NLSSVEHLYLQNNA 212
++ N+ + +++ + + S + + L N
Sbjct: 274 KALGAAF---------PNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQC 324
Query: 213 LGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQ 251
L F + DL I + LR + L
Sbjct: 325 L------IFAQKHQTNIEDLNIPDE--LRESIQTCKPLL 355
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 49/291 (16%), Positives = 92/291 (31%), Gaps = 70/291 (24%)
Query: 70 AGELSQSLVINCFSLEWLDLSNNNF-------VGQIFPNYMNLTRLWALYLYNNNFSGK- 121
+ + + I + LDLS NN + Q F N + +L L N+ K
Sbjct: 11 SNPVEEFTSIPH-GVTSLDLSLNNLYSISTVELIQAFAN--TPASVTSLNLSGNSLGFKN 67
Query: 122 ---IKDGLLRS-TELMVLDISNNRLSGHIPSWMGNF-----STLQILSMSKNLLEGNIPV 172
+ L + L++S N LS + T+ +L + N +
Sbjct: 68 SDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF-SSKSS 126
Query: 173 QF------NNLASLQILNISENNLS-------GSMISTLNLSSVEHLYLQNNALGGS--- 216
N AS+ LN+ N+L +++ + ++V L L+ N L
Sbjct: 127 SEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIP-ANVNSLNLRGNNLASKNCA 185
Query: 217 -------IPNTFFRGSALETLDLRINE----------------HSNLRTLLLRGNYLQGP 253
++ +LDL N +++ +L L N L GP
Sbjct: 186 ELAKFLASIPA-----SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240
Query: 254 IPHQLC----HLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDI 300
L L+ L + + ++ + + + + D
Sbjct: 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDK 291
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 1e-04
Identities = 60/400 (15%), Positives = 112/400 (28%), Gaps = 109/400 (27%)
Query: 57 QGLRLLDVSSNNF----AGELSQSLVINCFSLEWLDLSNNNF-------VGQIFPNYMNL 105
G+ LD+S NN EL Q+ S+ L+LS N+ + QI
Sbjct: 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA--IP 79
Query: 106 TRLWALYLYNNNFSGK----IKDGLLRS-TELMVLDISNNRLSGHIPSWMGNFSTLQILS 160
+ +L L N S K + L + VLD+ N + S+ +
Sbjct: 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF--------SSKSSSEFKQ 131
Query: 161 MSKNLLEGNIPVQFNNLASLQILNISENNLS-------GSMISTLNLSSVEHLYLQNNAL 213
N AS+ LN+ N+L +++ + ++V L L+ N L
Sbjct: 132 AFSN-----------LPASITSLNLRGNDLGIKSSDELIQILAAIP-ANVNSLNLRGNNL 179
Query: 214 GGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGP--------IPHQLCHLRKLG 265
+ E + +++ +L L N L H+ L
Sbjct: 180 ASK--------NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSL- 230
Query: 266 IMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELL-LD 324
++ N L+G + + S ++ + LD
Sbjct: 231 --NLCLNCLHGPSLENLKLLKDS---------------------------LKHLQTVYLD 261
Query: 325 GNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLN 384
+ + + + L +D + E+ I +L
Sbjct: 262 YDIVKNMSKEQCKALGAAFPNIQK----IIL---VDKNGKEIHPSHSIPISNLIRELSGK 314
Query: 385 LSHNFLSG----------SIPESFSNLKMIESLDLSHNKL 414
L + E + + + L
Sbjct: 315 ADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 8e-08
Identities = 26/134 (19%), Positives = 40/134 (29%), Gaps = 26/134 (19%)
Query: 81 CFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRS-TELMVLDISN 139
L + + + + L LY+ N ++ LR EL L I
Sbjct: 7 PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65
Query: 140 NRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLN 199
+ L + P F+ L LN+S N L T+
Sbjct: 66 SGLR-FVA-----------------------PDAFHFTPRLSRLNLSFNALESLSWKTVQ 101
Query: 200 LSSVEHLYLQNNAL 213
S++ L L N L
Sbjct: 102 GLSLQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 52.8 bits (126), Expect = 1e-07
Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 3/97 (3%)
Query: 369 DIPSEIGDLQNIHGLNLSHNFLSGSIP-ESFSNLKMIESLDLSHNKLNGQIPPQ-LTELH 426
D + +N+ L + + + L + +L + + L + P
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80
Query: 427 SLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFLC 463
LS ++S+N L Q + E GN C
Sbjct: 81 RLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHC 117
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 51.7 bits (123), Expect = 3e-07
Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Query: 359 LDLSNNELTGDIPSE-IGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 417
L + N + + + L + L + + L P++F + L+LS N L
Sbjct: 36 LYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-S 94
Query: 418 IPPQLTELHSLSTFDVSYNNL 438
+ + + SL +S N L
Sbjct: 95 LSWKTVQGLSLQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 5e-05
Identities = 27/155 (17%), Positives = 40/155 (25%), Gaps = 47/155 (30%)
Query: 130 TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENN 189
L L I N + H+ L L+ L I ++
Sbjct: 31 ENLTELYIENQQHLQHLELRD-----------------------LRGLGELRNLTIVKSG 67
Query: 190 LSGSMIST---LNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLR 246
L ++ + L L NAL T + +L+ L+L
Sbjct: 68 LR--FVAPDAFHFTPRLSRLNLSFNALESLSWKTV--------------QGLSLQELVLS 111
Query: 247 GNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPAC 281
GN L H C LR L +
Sbjct: 112 GNPL-----HCSCALRWLQRWEEEGLGGVPEQKLQ 141
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 7e-05
Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 3/96 (3%)
Query: 48 NIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPN-YMNLT 106
+ + + L L + + L + L L + + + P+ +
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80
Query: 107 RLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRL 142
RL L L N + ++ L L +S N L
Sbjct: 81 RLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 1e-07
Identities = 33/135 (24%), Positives = 51/135 (37%), Gaps = 14/135 (10%)
Query: 83 SLEWLDLSNN-NFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNR 141
E ++L + ++ L L L NN KI L L +L + N
Sbjct: 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNL 81
Query: 142 LSGHIPSWMGNFSTLQILSMSKNL---LEGNIPVQFNNLASLQILNISENNLSG-SMIST 197
+ I + TL+ L +S N L G L +L++L +S N ++ I
Sbjct: 82 IK-KIENLDAVADTLEELWISYNQIASLSG-----IEKLVNLRVLYMSNNKITNWGEIDK 135
Query: 198 L-NLSSVEHLYLQNN 211
L L +E L L N
Sbjct: 136 LAALDKLEDLLLAGN 150
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 28/145 (19%), Positives = 55/145 (37%), Gaps = 27/145 (18%)
Query: 33 PKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVI----NCFSLEWLD 88
+ V ++ E + +++ ++ + L +S+NN I +L L
Sbjct: 25 AEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-------KISSLSGMENLRILS 76
Query: 89 LSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPS 148
L N +I L L++ N + + G+ + L VL +SNN+++
Sbjct: 77 LGRNLIK-KIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKIT----- 128
Query: 149 WMGNFSTLQILSMSKNL----LEGN 169
N+ + L+ L L GN
Sbjct: 129 ---NWGEIDKLAALDKLEDLLLAGN 150
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 1e-06
Identities = 46/165 (27%), Positives = 72/165 (43%), Gaps = 27/165 (16%)
Query: 85 EWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFS---GKIKDGLLRSTELMVLDISNNR 141
E LDL + + LT+L L L N + D L TEL L ++NN+
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL---TELGTLGLANNQ 94
Query: 142 LSGHIPSWMGNF---STLQILSMSKNLLEGNIPVQ-FNNLASLQILNISENNLSGSMIST 197
L+ +P G F + L L + N L+ +P F+ L L+ L ++ N L +
Sbjct: 95 LAS-LPL--GVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ-----S 145
Query: 198 L------NLSSVEHLYLQNNALGGSIP-NTFFRGSALETLDLRIN 235
+ L++++ L L N L S+P F R L+T+ L N
Sbjct: 146 IPAGAFDKLTNLQTLSLSTNQL-QSVPHGAFDRLGKLQTITLFGN 189
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 1e-06
Identities = 25/130 (19%), Positives = 47/130 (36%), Gaps = 13/130 (10%)
Query: 87 LDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHI 146
+ L+ + Q Y N R L L I++ + +D S+N +
Sbjct: 2 VKLTAEL-IEQA-AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-- 56
Query: 147 PSWMGNFST---LQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSG-SMISTL-NLS 201
+ F L+ L ++ N + L L L ++ N+L + L +L
Sbjct: 57 ---LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLK 113
Query: 202 SVEHLYLQNN 211
S+ +L + N
Sbjct: 114 SLTYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 4e-06
Identities = 26/110 (23%), Positives = 38/110 (34%), Gaps = 4/110 (3%)
Query: 80 NCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISN 139
N LDL + I L + A+ +N K+ DG L L ++N
Sbjct: 17 NAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNN 73
Query: 140 NRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQF-NNLASLQILNISEN 188
NR+ L L ++ N L + +L SL L I N
Sbjct: 74 NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 15/81 (18%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
LDL ++ I + L ++ S N + + + F L+ +++L +++N++
Sbjct: 24 LDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIG 80
Query: 419 PPQLTELHSLSTFDVSYNNLS 439
L L+ ++ N+L
Sbjct: 81 EGLDQALPDLTELILTNNSLV 101
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 5e-06
Identities = 38/132 (28%), Positives = 55/132 (41%), Gaps = 10/132 (7%)
Query: 85 EWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLL-RSTELMVLDISNNRLS 143
+ L L +N + +L L LYL +N + G+ T+L VLD+ N+L+
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 144 GHIPSWMGNF---STLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-N 199
+PS F L+ L M N L +P L L L + +N L
Sbjct: 102 V-LPS--AVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDR 157
Query: 200 LSSVEHLYLQNN 211
LSS+ H YL N
Sbjct: 158 LSSLTHAYLFGN 169
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 23/136 (16%)
Query: 130 TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENN 189
T +L + +N+++ P + L+ L + N L F++L L +L++ N
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99
Query: 190 LSGSMISTL------NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEH------ 237
L+ L L ++ L++ N L +P R + L L L N+
Sbjct: 100 LT-----VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHG 153
Query: 238 -----SNLRTLLLRGN 248
S+L L GN
Sbjct: 154 AFDRLSSLTHAYLFGN 169
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 6e-04
Identities = 36/129 (27%), Positives = 54/129 (41%), Gaps = 8/129 (6%)
Query: 111 LYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNF---STLQILSMSKNLLE 167
LYL++N + L L + +N+L +P G F + L +L + N L
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA-LPV--GVFDSLTQLTVLDLGTNQLT 101
Query: 168 GNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPN-TFFRGSA 226
F+ L L+ L + N L+ L+ + HL L N L SIP+ F R S+
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQL-KSIPHGAFDRLSS 160
Query: 227 LETLDLRIN 235
L L N
Sbjct: 161 LTHAYLFGN 169
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 9e-06
Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 111 LYLYNNNFSGKIKDGLLRS-TELMVLDISNNRLSGHIPSWMGNF---STLQILSMSKNLL 166
L L +N DGL L+ L++ N+L+G I F S +Q L + +N +
Sbjct: 34 LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEP--NAFEGASHIQELQLGENKI 90
Query: 167 EGNIPV-QFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNN 211
+ I F L L+ LN+ +N +S M + +L+S+ L L +N
Sbjct: 91 K-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 1e-05
Identities = 22/101 (21%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Query: 340 MTKNRYESYKGDILELMAGLDLSNNELT-GDIPSEIGDLQNIHGLNLSHNFLSGSIPESF 398
M + + + + L L N + G I + N+ L+L + L S+ +
Sbjct: 10 MKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNL 67
Query: 399 SNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLS 439
L ++ L+LS N++ G + +L +L+ ++S N L
Sbjct: 68 PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 26/117 (22%), Positives = 41/117 (35%), Gaps = 14/117 (11%)
Query: 57 QGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNN 116
+R L + + + L +LE+L L N N L +L L L N
Sbjct: 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL--ISVSNLPKLPKLKKLELSEN 81
Query: 117 NFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNL----LEGN 169
G + + L L++S N+L + STL+ L + L L
Sbjct: 82 RIFGGLDMLAEKLPNLTHLNLSGNKLK--------DISTLEPLKKLECLKSLDLFNC 130
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 3e-05
Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 4/111 (3%)
Query: 80 NCFSLEWLDLSNN-NFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDIS 138
++ L L N + G+I L L L N + L + +L L++S
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELS 79
Query: 139 NNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQ-FNNLASLQILNISEN 188
NR+ G + L L++S N L+ ++ L L+ L++
Sbjct: 80 ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 4e-04
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
L L N L + + + L + L LS N + G + L + L+LS NKL
Sbjct: 54 LSLINVGLI-SVSN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK--- 108
Query: 419 PPQLTELHSLSTF 431
++ L L
Sbjct: 109 --DISTLEPLKKL 119
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 2e-05
Identities = 17/82 (20%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 359 LDLSNNELT-GDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 417
L L N+ G + + + + L+ + L+ SI + L ++ L+LS N+++G
Sbjct: 22 LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGG 79
Query: 418 IPPQLTELHSLSTFDVSYNNLS 439
+ + +L+ ++S N +
Sbjct: 80 LEVLAEKCPNLTHLNLSGNKIK 101
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 2e-05
Identities = 23/111 (20%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Query: 80 NCFSLEWLDLSNN-NFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDIS 138
++ L L N+ + G++ L L N + I L + +L L++S
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELS 72
Query: 139 NNRLSGHIPSWMGNFSTLQILSMSKNLLEG-NIPVQFNNLASLQILNISEN 188
+NR+SG + L L++S N ++ + L +L+ L++
Sbjct: 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 8e-05
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 11/107 (10%)
Query: 111 LYLYNNNFS-GKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFST---LQILSMSKNLL 166
L L N+ + GK++ EL L N L+ + N L+ L +S N +
Sbjct: 22 LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-----SIANLPKLNKLKKLELSDNRV 76
Query: 167 EGNIPVQFNNLASLQILNISENNLSG-SMISTL-NLSSVEHLYLQNN 211
G + V +L LN+S N + S I L L +++ L L N
Sbjct: 77 SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 1e-04
Identities = 24/115 (20%), Positives = 44/115 (38%), Gaps = 14/115 (12%)
Query: 59 LRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNF 118
++ L + ++ + L LE+L N N L +L L L +N
Sbjct: 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL--TSIANLPKLNKLKKLELSDNRV 76
Query: 119 SGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNL----LEGN 169
SG ++ + L L++S N++ + ST++ L +NL L
Sbjct: 77 SGGLEVLAEKCPNLTHLNLSGNKIK--------DLSTIEPLKKLENLKSLDLFNC 123
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 40/289 (13%), Positives = 85/289 (29%), Gaps = 55/289 (19%)
Query: 5 SAQHGLHSLDISRNSFSGKLPQNMGIVL----PKLVYMNISKNSFEGNIPSSIGKM-QGL 59
L L+++ + + VL L +N++ + ++ +
Sbjct: 69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRA 128
Query: 60 RLLDVSSNNF----AGELSQSLVINCFSLEWLDLSNNNF----VGQIFPNYMNLTRLWAL 111
R L + N+ +L L+ + + L LSNN V + T + L
Sbjct: 129 RKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHL 188
Query: 112 YLYNNNFSGK----IKDGLLRSTELMVLDISNNRLSG----HIPSWMGNFSTLQILSMSK 163
L + + + L R+ +L L+++ N + +L++L +
Sbjct: 189 SLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYF 248
Query: 164 NLLE-------GNIPVQFNNLASLQILNISENNLS--GSMISTLNLSSVEHLYLQNNALG 214
N L ++ A + + +S S+I + ++
Sbjct: 249 NELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARV--- 305
Query: 215 GSIPNTFFRGSALETLDLRINE---------------HSNLRTLLLRGN 248
R L DL + +R LL +
Sbjct: 306 -------QRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLG 347
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 3e-05
Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 16/109 (14%)
Query: 111 LYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFST---LQILSMSKNLLE 167
LYL N F+ + L L ++D+SNNR+S + + +FS L L +S N L
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSN--QSFSNMTQLLTLILSYNRLR 91
Query: 168 GNIPV-QFNNLASLQILNISENNLS----GSMISTLNLSSVEHLYLQNN 211
IP F+ L SL++L++ N++S G+ +LS++ HL + N
Sbjct: 92 -CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFN---DLSALSHLAIGAN 136
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 28/88 (31%), Positives = 53/88 (60%), Gaps = 6/88 (6%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPE-SFSNLKMIESLDLSHNKLNGQ 417
L L N+ T +P E+ + +++ ++LS+N +S ++ SFSN+ + +L LS+N+L
Sbjct: 36 LYLDGNQFTL-VPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR-C 92
Query: 418 IPPQLTE-LHSLSTFDVSYNNLSGPIPD 444
IPP+ + L SL + N++S +P+
Sbjct: 93 IPPRTFDGLKSLRLLSLHGNDISV-VPE 119
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 3e-05
Identities = 43/166 (25%), Positives = 69/166 (41%), Gaps = 27/166 (16%)
Query: 83 SLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFS---GKIKDGLLRSTELMVLDISN 139
++ +L L N LT L L L N + D L T L L +
Sbjct: 64 NVRYLALGGNKL--HDISALKELTNLTYLILTGNQLQSLPNGVFDKL---TNLKELVLVE 118
Query: 140 NRLSGHIPSWMGNF---STLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMIS 196
N+L +P G F + L L+++ N L+ F+ L +L L++S N L
Sbjct: 119 NQLQS-LPD--GVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ----- 170
Query: 197 TL------NLSSVEHLYLQNNALGGSIPN-TFFRGSALETLDLRIN 235
+L L+ ++ L L N L S+P+ F R ++L+ + L N
Sbjct: 171 SLPEGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDN 215
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 34/165 (20%), Positives = 71/165 (43%), Gaps = 21/165 (12%)
Query: 129 STELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISEN 188
E + ++ ++ + +++ + + + ++ ++ L +++ L + N
Sbjct: 18 FAETIKANLKKKSVT-DAVTQNE-LNSIDQIIANNSDIK-SVQG-IQYLPNVRYLALGGN 73
Query: 189 NLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRG-SALETLDLRINEHS--------- 238
L + + L+++ +L L N L S+PN F + L+ L L N+
Sbjct: 74 KLH-DISALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK 131
Query: 239 --NLRTLLLRGNYLQGPIPHQLC-HLRKLGIMDISHNRLNGSIPA 280
NL L L N LQ +P + L L +D+S+N+L S+P
Sbjct: 132 LTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQ-SLPE 174
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 44.2 bits (103), Expect = 7e-05
Identities = 32/202 (15%), Positives = 66/202 (32%), Gaps = 33/202 (16%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
+D S ++ VL + +N K N+ L+ L++ S
Sbjct: 146 WGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGL 205
Query: 70 AGELSQSLVI-NCFSLEWLDLS--NNNFVG-------QIFPNYMNLTRLWALYLYNNNFS 119
+ + ++ + +LE L L ++ + + L L + +
Sbjct: 206 PDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQ 265
Query: 120 GKIKDGLLRS---TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNN 176
+ + L S +L +DIS L+ ++ LL+ +
Sbjct: 266 NVVVEMFLESDILPQLETMDISAGVLTD---------------EGARLLLDH-----VDK 305
Query: 177 LASLQILNISENNLSGSMISTL 198
+ L+ +N+ N LS M L
Sbjct: 306 IKHLKFINMKYNYLSDEMKKEL 327
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 42.6 bits (99), Expect = 2e-04
Identities = 9/73 (12%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 359 LDLSNNELTGDIPSEIGD---LQNIHGLNLSHNFLSGS----IPESFSNLKMIESLDLSH 411
L + + E + + L + +++S L+ + + +K ++ +++ +
Sbjct: 257 LGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY 316
Query: 412 NKLNGQIPPQLTE 424
N L+ ++ +L +
Sbjct: 317 NYLSDEMKKELQK 329
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 11/133 (8%)
Query: 85 EWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRS-TELMVLDISNNRLS 143
+LDL N+ + LT L LYL N + +G+ T L L++S N+L
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ 89
Query: 144 GHIPSWMGNF---STLQILSMSKNLLEGNIPV-QFNNLASLQILNISENNL-SGSMISTL 198
+P+ G F + L+ L+++ N L+ ++P F+ L L+ L + +N L S
Sbjct: 90 S-LPN--GVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFD 145
Query: 199 NLSSVEHLYLQNN 211
L+S+++++L +N
Sbjct: 146 RLTSLQYIWLHDN 158
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 35/258 (13%), Positives = 81/258 (31%), Gaps = 22/258 (8%)
Query: 3 LTSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSF--EGNIPSSIGKMQGLR 60
++S+ L + + R + + + + +S + + + L+
Sbjct: 100 MSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLK 159
Query: 61 LLDVSSNNFAGELSQSLVI---NCFSLEWLDLSN------NNFVGQIFPNYMNLTRLWAL 111
LD+ ++ L SL L++S + + ++ NL L
Sbjct: 160 ELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSL--- 216
Query: 112 YLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMG------NFSTLQILSMSKNL 165
L K+ L R+ +L L + G L+ LS +
Sbjct: 217 KLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA 276
Query: 166 LEGNIPVQFNNLASLQILNISENNLSGSMISTL--NLSSVEHLYLQNNALGGSIPNTFFR 223
+ +P ++ + L LN+S + + L ++ L++ + +
Sbjct: 277 VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAST 336
Query: 224 GSALETLDLRINEHSNLR 241
L L + +E +
Sbjct: 337 CKDLRELRVFPSEPFVME 354
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 558 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 100.0 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 100.0 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.98 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.98 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.96 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.96 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.96 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.96 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.95 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.95 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.95 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.95 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.95 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.95 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.95 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.95 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.95 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.94 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.94 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.94 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.94 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.94 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.94 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.94 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.93 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.93 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.93 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.93 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.92 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.92 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.92 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.92 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.91 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.91 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.9 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.89 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.89 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.88 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.88 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.88 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.88 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.87 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.87 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.87 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.87 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.87 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.86 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.85 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.85 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.85 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.84 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.82 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.82 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.81 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.81 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.81 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.8 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.8 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.8 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.79 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.78 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.78 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.78 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.77 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.76 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.76 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.76 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.75 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.75 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.73 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.72 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.72 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.72 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.71 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.71 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.71 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.7 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.69 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.68 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.67 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.65 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.65 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.64 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.63 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.63 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.62 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.62 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.61 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.61 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.59 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.58 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.58 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.54 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.52 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.51 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.51 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.49 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.48 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.47 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.46 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.44 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.43 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.36 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.36 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.31 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.31 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.14 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.12 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.92 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.81 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.56 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.47 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.35 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.3 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.25 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.12 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 97.44 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 97.39 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.37 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.3 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-53 Score=464.85 Aligned_cols=459 Identities=34% Similarity=0.497 Sum_probs=354.8
Q ss_pred cCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCC
Q 037792 6 AQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLE 85 (558)
Q Consensus 6 ~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 85 (558)
.+++|++|++++|.+++.+|..++..+++|++|++++|.+++..|..++++++|++|++++|.+++.+|...+..+++|+
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~ 346 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC
Confidence 56677777777777777777777765688888888888888888888888888888888888888788877668888888
Q ss_pred EEEccCCccCccCchhhcCCC-ccCeeeccccccccccchhhcC--CCCCCEEEccCCcCCCCCcccccCCCCCcEEEcc
Q 037792 86 WLDLSNNNFVGQIFPNYMNLT-RLWALYLYNNNFSGKIKDGLLR--STELMVLDISNNRLSGHIPSWMGNFSTLQILSMS 162 (558)
Q Consensus 86 ~L~l~~n~i~~~~~~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 162 (558)
+|++++|.+.+..|..+.+++ +|++|++++|.+++..+..+.. +++|++|++++|.+++..|..+.++++|+.|+++
T Consensus 347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 426 (768)
T 3rgz_A 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426 (768)
T ss_dssp EEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECC
T ss_pred EEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECc
Confidence 888888888877788888777 8888888888888777777666 6788888888888888888888888889999999
Q ss_pred cCcCcccchhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCC------
Q 037792 163 KNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRIN------ 235 (558)
Q Consensus 163 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n------ 235 (558)
+|.+.+..|..+..+++|+.|++++|.+.+..+..+ .+++|++|++++|.+++..|..+..+++|+.|++++|
T Consensus 427 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 506 (768)
T 3rgz_A 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506 (768)
T ss_dssp SSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred CCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcC
Confidence 988888888888888889999999888887666555 7888999999999888888888888888999998888
Q ss_pred -----CCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccc
Q 037792 236 -----EHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAY 310 (558)
Q Consensus 236 -----~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (558)
.+++|++|++++|.+++.+|..+..+++|+.|++++|+++|.+|..+.......... ...+.... +.....
T Consensus 507 p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~-~~~~~~~~---~~~~~~ 582 (768)
T 3rgz_A 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN-FIAGKRYV---YIKNDG 582 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCS-TTCSCEEE---EEECCS
T ss_pred ChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhh-cccccccc---cccccc
Confidence 346788899999988888888888888999999999988888888776543211100 00000000 000000
Q ss_pred cC----------ccc----chhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccC
Q 037792 311 VS----------NYY----NSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGD 376 (558)
Q Consensus 311 ~~----------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 376 (558)
.. .+. ........ .... . .......+..-..+. .+++|+.||+++|++++.+|..++.
T Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~----~-l~~~~~~g~~~~~~~--~l~~L~~LdLs~N~l~g~ip~~l~~ 654 (768)
T 3rgz_A 583 MKKECHGAGNLLEFQGIRSEQLNRLST-RNPC----N-ITSRVYGGHTSPTFD--NNGSMMFLDMSYNMLSGYIPKEIGS 654 (768)
T ss_dssp CCTTCCSSEEEEECTTCCGGGGGGGGG-TCCS----C-TTSCEEEEECCCSCS--SSBCCCEEECCSSCCBSCCCGGGGG
T ss_pred ccccccccccccccccccchhhhcccc-cccc----c-cccceecccCchhhh--ccccccEEECcCCcccccCCHHHhc
Confidence 00 000 00000000 0000 0 000000000001111 1688999999999999999999999
Q ss_pred ccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCCCcccCCCCcccc
Q 037792 377 LQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSY 456 (558)
Q Consensus 377 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~ 456 (558)
+++|++|+|++|.+++.+|+.|+++++|++|||++|++++.+|..+..+++|++||+++|+++|.+|...+|.++...++
T Consensus 655 l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~ 734 (768)
T 3rgz_A 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKF 734 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGG
T ss_pred cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCC
Q 037792 457 RGNLFLCGPAINKGCTNLPEL 477 (558)
Q Consensus 457 ~~N~~~C~~~~~~~c~~~~~~ 477 (558)
.|||.+|+.++. .|......
T Consensus 735 ~gN~~Lcg~~l~-~C~~~~~~ 754 (768)
T 3rgz_A 735 LNNPGLCGYPLP-RCDPSNAD 754 (768)
T ss_dssp CSCTEEESTTSC-CCCSCC--
T ss_pred cCCchhcCCCCc-CCCCCccC
Confidence 999999999986 88765433
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-49 Score=442.01 Aligned_cols=445 Identities=21% Similarity=0.240 Sum_probs=243.0
Q ss_pred cCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCC-chhhhCCCCCCEEEcccccCCccchHHHHhcCCCC
Q 037792 6 AQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNI-PSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSL 84 (558)
Q Consensus 6 ~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 84 (558)
-.++|++||+++|.++ .++...+..+++|++|++++|...+.+ |.+|.++++|++|+|++|.++ .+++..+.++++|
T Consensus 22 lp~~l~~LdLs~N~i~-~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~-~~~p~~~~~l~~L 99 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHL 99 (844)
T ss_dssp SCTTCCEEEEESCCCC-EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC-EECTTSSCSCSSC
T ss_pred CCCCcCEEECCCCcCC-ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc-ccCHhHccCCccc
Confidence 3455666666666665 332222334666666666666333222 555666666666666666665 2322233556666
Q ss_pred CEEEccCCccCccCchh--hcCCCccCeeeccccccccccc-hhhcCCCCCCEEEccCCcCCCCCcccccCC--CCCcEE
Q 037792 85 EWLDLSNNNFVGQIFPN--YMNLTRLWALYLYNNNFSGKIK-DGLLRSTELMVLDISNNRLSGHIPSWMGNF--STLQIL 159 (558)
Q Consensus 85 ~~L~l~~n~i~~~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L 159 (558)
++|++++|.+.+..+.. +.++++|++|++++|.+.+..+ ..++++++|++|++++|.+++..+..+..+ ++|+.|
T Consensus 100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L 179 (844)
T 3j0a_A 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179 (844)
T ss_dssp CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCC
T ss_pred CEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceE
Confidence 66666666665433333 5566666666666666554433 345566666666666666555544444433 344444
Q ss_pred EcccCcCcccchhhhcCC--------------------------------------------------------------
Q 037792 160 SMSKNLLEGNIPVQFNNL-------------------------------------------------------------- 177 (558)
Q Consensus 160 ~L~~n~l~~~~~~~~~~l-------------------------------------------------------------- 177 (558)
++++|.+.+..+..+..+
T Consensus 180 ~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~ 259 (844)
T 3j0a_A 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259 (844)
T ss_dssp EECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTT
T ss_pred ECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhh
Confidence 444444433333322222
Q ss_pred ------cccceeeccccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCC-----------CCCC
Q 037792 178 ------ASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRIN-----------EHSN 239 (558)
Q Consensus 178 ------~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n-----------~~~~ 239 (558)
++|+.|++++|.+.+..+..+ .+++|+.|++++|.+.+..+.++..+++|+.|++++| .+++
T Consensus 260 f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 339 (844)
T 3j0a_A 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK 339 (844)
T ss_dssp TTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTT
T ss_pred hhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCC
Confidence 345555555555554444333 4555555555555555555555555555555555555 2344
Q ss_pred cCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccch----hhhcccccccCccc
Q 037792 240 LRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIV----LRMYLDDAYVSNYY 315 (558)
Q Consensus 240 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 315 (558)
|+.|++++|.+.+..+..+..+++|+.|++++|.+++. +. +.++....+..+.+...+.. ....+..+......
T Consensus 340 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~-~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~ 417 (844)
T 3j0a_A 340 VAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-HF-IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLD 417 (844)
T ss_dssp CCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-SS-CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSST
T ss_pred CCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-cC-CCCcchhccCCCCcccccccccccceeecccCccccCc
Confidence 55555555555544444555555555555555555421 11 11121111111111111000 00000000000000
Q ss_pred chhhhhhccCCCccccccceeeeeecccccccccc----hhhcccCEEEccCCCCC-----CCCCccccCccCCCeeecc
Q 037792 316 NSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKG----DILELMAGLDLSNNELT-----GDIPSEIGDLQNIHGLNLS 386 (558)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls 386 (558)
.. .... ..+.. ....+..+.....+. ..+++|+.|++++|.++ +..+..|.++++|++|+|+
T Consensus 418 ~~---~~~~-----~l~~L-~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls 488 (844)
T 3j0a_A 418 IL---YFLL-----RVPHL-QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLN 488 (844)
T ss_dssp TH---HHHT-----TCTTC-CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCC
T ss_pred hh---hhhh-----cCCcc-ceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECC
Confidence 00 0000 00111 111222222221111 11577888888888876 3345668888999999999
Q ss_pred CCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCCCcccCCCCcccccCCCCCCCCC
Q 037792 387 HNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGPA 466 (558)
Q Consensus 387 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~N~~~C~~~ 466 (558)
+|.+++.+|..|.++++|+.|+|++|++++.++..+. ++|+.|++++|++++.+|. .+..+..+++.+||+.|+|+
T Consensus 489 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~--~~~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 489 HNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPD--VFVSLSVLDITHNKFICECE 564 (844)
T ss_dssp HHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSC--CCSSCCEEEEEEECCCCSSS
T ss_pred CCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChh--HhCCcCEEEecCCCcccccc
Confidence 9999988888899999999999999999987777665 7899999999999988775 35688899999999999996
Q ss_pred C
Q 037792 467 I 467 (558)
Q Consensus 467 ~ 467 (558)
.
T Consensus 565 ~ 565 (844)
T 3j0a_A 565 L 565 (844)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-47 Score=417.53 Aligned_cols=456 Identities=29% Similarity=0.400 Sum_probs=298.4
Q ss_pred CCcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCC
Q 037792 4 TSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFS 83 (558)
Q Consensus 4 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 83 (558)
+.++++|++|++++|.+++.+|..+.. +++|++|++++|.+++..|.. .+++|++|++++|.+++.+|..++..+++
T Consensus 219 l~~l~~L~~L~Ls~n~l~~~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~ 295 (768)
T 3rgz_A 219 LGDCSALQHLDISGNKLSGDFSRAIST-CTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDT 295 (768)
T ss_dssp CTTCCSCCEEECCSSCCCSCHHHHTTT-CSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTT
T ss_pred cccCCCCCEEECcCCcCCCcccHHHhc-CCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCc
Confidence 567889999999999998777766654 889999999999888766654 77888888888888877777766544578
Q ss_pred CCEEEccCCccCccCchhhcCCCccCeeeccccccccccchh-hcCCCCCCEEEccCCcCCCCCcccccCCC-CCcEEEc
Q 037792 84 LEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDG-LLRSTELMVLDISNNRLSGHIPSWMGNFS-TLQILSM 161 (558)
Q Consensus 84 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L 161 (558)
|++|++++|.+.+..|..+.++++|++|++++|.+.+..|.. +.++++|++|++++|.+++..|..+..++ +|+.|++
T Consensus 296 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L 375 (768)
T 3rgz_A 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375 (768)
T ss_dssp CSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEEC
T ss_pred CCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEc
Confidence 888888888887777777888888888888888877555544 77777888888888777766676666655 6666666
Q ss_pred ccCcCcccchhhhcC--CcccceeeccccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCC--
Q 037792 162 SKNLLEGNIPVQFNN--LASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINE-- 236 (558)
Q Consensus 162 ~~n~l~~~~~~~~~~--l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-- 236 (558)
++|.+.+..+..+.. +++|+.|++++|.+++..+..+ .+++|++|++++|.+++..|..+..+++|+.|++++|.
T Consensus 376 s~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~ 455 (768)
T 3rgz_A 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455 (768)
T ss_dssp CSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCC
T ss_pred cCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCccc
Confidence 666665555554444 4556666666665554444333 55556666666665555555555555556666555552
Q ss_pred ---------CCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccc---cccccCccccccchhhh
Q 037792 237 ---------HSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLF---SRVENGYLYGFDIVLRM 304 (558)
Q Consensus 237 ---------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~---~~~~~~~~~~~~~~~~~ 304 (558)
+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|.++..++. ..+..+.+.|..+....
T Consensus 456 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 535 (768)
T 3rgz_A 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGG
T ss_pred CcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHc
Confidence 345555555555555555555555555555555555555555555444331 22222222222111110
Q ss_pred --------cccccccC-cccchhhhhhccCCCccccccceeeeeeccccc-------------ccc---cchhhcccCEE
Q 037792 305 --------YLDDAYVS-NYYNSTVELLLDGNDGRMLGALVAVNFMTKNRY-------------ESY---KGDILELMAGL 359 (558)
Q Consensus 305 --------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~---~~~~l~~L~~L 359 (558)
.+..+... .++........... ...........+..... ... ....+..+..+
T Consensus 536 ~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 613 (768)
T 3rgz_A 536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA--ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 613 (768)
T ss_dssp GCTTCCEEECCSSEEESBCCGGGGTTTTCBC--CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCS
T ss_pred CCCCCCEEECCCCccCCcCChHHhcccchhh--hhccccccccccccccccccccccccccccccccchhhhcccccccc
Confidence 01110000 01100000000000 00000001111111000 000 00124556667
Q ss_pred EccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCc
Q 037792 360 DLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLS 439 (558)
Q Consensus 360 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~ 439 (558)
+++.|.+.+.+|..+..+++|+.|++++|++++.+|..++++++|+.|+|++|.+++.+|..+..+++|++||+++|+++
T Consensus 614 ~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~ 693 (768)
T 3rgz_A 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693 (768)
T ss_dssp CTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred ccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc
Confidence 77888888888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC-CcccCCCCcccccCCCCCCC
Q 037792 440 GPIPD-KEQFSTFDESSYRGNLFLCG 464 (558)
Q Consensus 440 ~~~p~-~~~~~~l~~~~~~~N~~~C~ 464 (558)
|.+|. ...++.++.+++++|+....
T Consensus 694 g~ip~~l~~l~~L~~L~ls~N~l~g~ 719 (768)
T 3rgz_A 694 GRIPQAMSALTMLTEIDLSNNNLSGP 719 (768)
T ss_dssp ECCCGGGGGCCCCSEEECCSSEEEEE
T ss_pred CcCChHHhCCCCCCEEECcCCccccc
Confidence 99997 57788899999999987543
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-46 Score=399.10 Aligned_cols=431 Identities=20% Similarity=0.185 Sum_probs=270.3
Q ss_pred CCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEE
Q 037792 8 HGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWL 87 (558)
Q Consensus 8 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 87 (558)
+++++|++++|.++ .++...+..+++|++|++++|.+++..|.+|.++++|++|++++|.+++ +++..+.++++|++|
T Consensus 33 ~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 33 NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF-MAETALSGPKALKHL 110 (606)
T ss_dssp TTCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSE-ECTTTTSSCTTCCEE
T ss_pred CcCcEEEccCCccC-cCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccc-cChhhhcccccccEe
Confidence 35666666666666 4433333346666666666666666666666666666666666666663 322233566666666
Q ss_pred EccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCc--EEEcccCc
Q 037792 88 DLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQ--ILSMSKNL 165 (558)
Q Consensus 88 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~--~L~L~~n~ 165 (558)
++++|.+.+..+..+.++++|++|++++|.+.+.....+..+++|++|++++|.+++..+..++.+++|+ .|++++|.
T Consensus 111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190 (606)
T ss_dssp ECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred eccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCc
Confidence 6666666654455566666666666666666543333334456666666666665555455555555555 45555554
Q ss_pred Cc---------------------------------------------------------------------------ccc
Q 037792 166 LE---------------------------------------------------------------------------GNI 170 (558)
Q Consensus 166 l~---------------------------------------------------------------------------~~~ 170 (558)
+. +..
T Consensus 191 l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~ 270 (606)
T 3t6q_A 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270 (606)
T ss_dssp CCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCC
T ss_pred cCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccC
Confidence 44 333
Q ss_pred hhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCC------------CCC
Q 037792 171 PVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRIN------------EHS 238 (558)
Q Consensus 171 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n------------~~~ 238 (558)
+..|+.+++|+.|++++|.++..+.....+++|++|++++|.+.+..+..+..+++|+.|++++| .++
T Consensus 271 ~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 271 SNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred HHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 44455556666666666666655444445666666666666666555566666666666666665 235
Q ss_pred CcCEEEccCCcCCCCc--hhhccCCCCCCEEEcccCcCccccChhhhcccc---cccccCccccccchhhhcccccccCc
Q 037792 239 NLRTLLLRGNYLQGPI--PHQLCHLRKLGIMDISHNRLNGSIPACITNMLF---SRVENGYLYGFDIVLRMYLDDAYVSN 313 (558)
Q Consensus 239 ~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (558)
+|++|++++|.+++.. +..+..+++|++|++++|++.+..|..+..++. ..+..+.+.+......
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---------- 420 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP---------- 420 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCT----------
T ss_pred cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchh----------
Confidence 5666666666666444 555666666666666666666555555444321 1111111111100000
Q ss_pred ccchhhhhhccCCCccccccceeeeeecccccccccc---hhhcccCEEEccCCCCCCC---CCccccCccCCCeeeccC
Q 037792 314 YYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKG---DILELMAGLDLSNNELTGD---IPSEIGDLQNIHGLNLSH 387 (558)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~ 387 (558)
....+....+ .+..+....... ..+++|+.|++++|.+.+. .+..+..+++|++|++++
T Consensus 421 --------------~~~l~~L~~L-~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~ 485 (606)
T 3t6q_A 421 --------------FQNLHLLKVL-NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485 (606)
T ss_dssp --------------TTTCTTCCEE-ECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTT
T ss_pred --------------hhCcccCCEE-ECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCC
Confidence 0000011111 112222211111 1278999999999999863 346789999999999999
Q ss_pred CcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCC-CcccCCCCcccccCCCCCCCCC
Q 037792 388 NFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD-KEQFSTFDESSYRGNLFLCGPA 466 (558)
Q Consensus 388 N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~~~l~~~~~~~N~~~C~~~ 466 (558)
|.+++..|..|+.+++|+.|++++|++++..|..+..+++| +|++++|++++.+|. ...++.++.+++++||+.|+|+
T Consensus 486 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 99998889999999999999999999999999999999999 999999999987776 4567889999999999999996
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=394.59 Aligned_cols=115 Identities=26% Similarity=0.260 Sum_probs=96.8
Q ss_pred hcccCEEEccCCCCCCCC--------CccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhccc
Q 037792 353 LELMAGLDLSNNELTGDI--------PSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTE 424 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~~--------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~ 424 (558)
+++|+.|++++|.+++.. +..+.++++|++|++++|+++...+..|.++++|+.|++++|+++...+..|..
T Consensus 503 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~ 582 (680)
T 1ziw_A 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 582 (680)
T ss_dssp CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCC
Confidence 678889999999887542 223778899999999999998666667999999999999999999888888899
Q ss_pred CCCCCEEecCCCCCcCCCCCC-c-ccCCCCcccccCCCCCCCCCC
Q 037792 425 LHSLSTFDVSYNNLSGPIPDK-E-QFSTFDESSYRGNLFLCGPAI 467 (558)
Q Consensus 425 l~~L~~L~l~~N~l~~~~p~~-~-~~~~l~~~~~~~N~~~C~~~~ 467 (558)
+++|+.|++++|++++..|.. . .++.++.+++++|||.|+|+.
T Consensus 583 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 583 QVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 999999999999999776652 2 578899999999999999974
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-45 Score=396.41 Aligned_cols=406 Identities=19% Similarity=0.128 Sum_probs=274.0
Q ss_pred CCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEE
Q 037792 8 HGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWL 87 (558)
Q Consensus 8 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 87 (558)
+++++|++++|.++ .++...+..+++|++|++++|.+++..|.+|.++++|++|++++|.+++..|. .+.++++|++|
T Consensus 32 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L 109 (606)
T 3vq2_A 32 SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG-SFSGLTSLENL 109 (606)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTT-SSTTCTTCCEE
T ss_pred CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChh-hcCCcccCCEE
Confidence 56777777777776 45554444577777777777777766666777777777777777777633333 34667777777
Q ss_pred EccCCccCccCchhhcCCCccCeeecccccccc-ccchhhcCCCCCCEEEccCCcCCCCCcccccCCC------------
Q 037792 88 DLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSG-KIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFS------------ 154 (558)
Q Consensus 88 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------------ 154 (558)
++++|.+.+..+..+.++++|++|++++|.+.+ ..|..+.++++|++|++++|.+++..+..++.+.
T Consensus 110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189 (606)
T ss_dssp ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred EccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeecc
Confidence 777777766555667777777777777777764 3466677777777777777776655444443322
Q ss_pred ---------------CCcEEEcccCcCcc---------------------------------------------------
Q 037792 155 ---------------TLQILSMSKNLLEG--------------------------------------------------- 168 (558)
Q Consensus 155 ---------------~L~~L~L~~n~l~~--------------------------------------------------- 168 (558)
+|+.|++++|.+.+
T Consensus 190 ~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 269 (606)
T 3vq2_A 190 LNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269 (606)
T ss_dssp TCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEEC
T ss_pred CCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecc
Confidence 34455554443320
Q ss_pred -------cchh---------------------hhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhh
Q 037792 169 -------NIPV---------------------QFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNT 220 (558)
Q Consensus 169 -------~~~~---------------------~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 220 (558)
..+. .+..+++|+.|++++|.+...+ .. .+++|++|++++|...+.. .
T Consensus 270 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~--~ 345 (606)
T 3vq2_A 270 YTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISF--K 345 (606)
T ss_dssp CCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEEC--C
T ss_pred ccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccch--h
Confidence 0000 1122223334444444432222 11 3444444444444332222 4
Q ss_pred hhCCCCCcEEEcCCC-------------CCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccC-hhhhccc
Q 037792 221 FFRGSALETLDLRIN-------------EHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIP-ACITNML 286 (558)
Q Consensus 221 ~~~~~~L~~L~l~~n-------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~ 286 (558)
+..+++|+.|++++| .+++|++|++++|.+++ +|..+..+++|+.|++++|++.+..| ..+.+++
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 424 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccc
Confidence 556788889999888 35788899999988874 55778888999999999998876665 4444433
Q ss_pred cc---ccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccC
Q 037792 287 FS---RVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSN 363 (558)
Q Consensus 287 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~ 363 (558)
.. .+..+.+.+... ..+ ..+++|++|++++
T Consensus 425 ~L~~L~l~~n~l~~~~~---------------------------------------------~~~--~~l~~L~~L~l~~ 457 (606)
T 3vq2_A 425 KLLYLDISYTNTKIDFD---------------------------------------------GIF--LGLTSLNTLKMAG 457 (606)
T ss_dssp TCCEEECTTSCCEECCT---------------------------------------------TTT--TTCTTCCEEECTT
T ss_pred cCCEEECcCCCCCccch---------------------------------------------hhh--cCCCCCCEEECCC
Confidence 11 111111100000 000 1178999999999
Q ss_pred CCCCC-CCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCC
Q 037792 364 NELTG-DIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPI 442 (558)
Q Consensus 364 n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 442 (558)
|.+.+ ..|..+..+++|++|++++|.+++..|..|+++++|++|++++|++++..|..+..+++|++|++++|+++...
T Consensus 458 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p 537 (606)
T 3vq2_A 458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK 537 (606)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEE
T ss_pred CcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccC
Confidence 99997 47888999999999999999999988999999999999999999999998999999999999999999999544
Q ss_pred CCCcccC-CCCcccccCCCCCCCCCC
Q 037792 443 PDKEQFS-TFDESSYRGNLFLCGPAI 467 (558)
Q Consensus 443 p~~~~~~-~l~~~~~~~N~~~C~~~~ 467 (558)
+....+. +++.+++++||+.|+|+.
T Consensus 538 ~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 538 GILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp SCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred HhHhhhcccCcEEEccCCCcccCCcc
Confidence 4344454 589999999999999964
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-44 Score=384.57 Aligned_cols=387 Identities=21% Similarity=0.276 Sum_probs=323.7
Q ss_pred CCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcC------------------------------------------
Q 037792 8 HGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSF------------------------------------------ 45 (558)
Q Consensus 8 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i------------------------------------------ 45 (558)
.+++.|+|+++.+.|.+|..++. +++|++|+|++|.+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~-L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQ-LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGG-CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCcccCCcCChHHhc-CccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 57999999999999999988876 99999999998843
Q ss_pred ------------------------------------CCCCchhhhCCCCCCEEEcccccCCcc-----------------
Q 037792 46 ------------------------------------EGNIPSSIGKMQGLRLLDVSSNNFAGE----------------- 72 (558)
Q Consensus 46 ------------------------------------~~~~~~~~~~l~~L~~L~L~~n~l~~~----------------- 72 (558)
++ +|..++++++|++|++++|.+++.
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 34 678899999999999999999964
Q ss_pred chHHHHh--cCCCCCEEEccCCccCccCchhhcCCCccCeeeccccc-ccc-ccchhhcCC------CCCCEEEccCCcC
Q 037792 73 LSQSLVI--NCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNN-FSG-KIKDGLLRS------TELMVLDISNNRL 142 (558)
Q Consensus 73 ~~~~~~~--~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-i~~-~~~~~~~~l------~~L~~L~L~~n~l 142 (558)
+|..+ . ++++|++|++++|.+.+.+|..+.++++|++|++++|. +++ ..|..+..+ ++|++|++++|.+
T Consensus 239 ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 239 KTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp TTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred Cchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 78765 5 79999999999999999999999999999999999998 887 788888776 8999999999999
Q ss_pred CCCCcc--cccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCCCcCCCC-ccEEEccCCcCcccchh
Q 037792 143 SGHIPS--WMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSS-VEHLYLQNNALGGSIPN 219 (558)
Q Consensus 143 ~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~ 219 (558)
+ .+|. .++++++|+.|++++|.+.+.+| .+..+++|+.|++++|.+...+..+..+++ |++|++++|.++ .+|.
T Consensus 318 ~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~ 394 (636)
T 4eco_A 318 K-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPN 394 (636)
T ss_dssp S-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred C-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccch
Confidence 9 7887 89999999999999999998888 889999999999999999966666558888 999999999998 7777
Q ss_pred hhhCCC--CCcEEEcCCCCC------------------CCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccC
Q 037792 220 TFFRGS--ALETLDLRINEH------------------SNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIP 279 (558)
Q Consensus 220 ~~~~~~--~L~~L~l~~n~~------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 279 (558)
.+...+ +|+.|++++|.+ ++|++|++++|.+++..+..+..+++|++|++++|+++ .+|
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~ 473 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIP 473 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCC
T ss_pred hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcC
Confidence 766554 788888887732 36778888888887555555667788888888888876 444
Q ss_pred hhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEE
Q 037792 280 ACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGL 359 (558)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 359 (558)
.......... ...+++|+.|
T Consensus 474 ~~~~~~~~~~------------------------------------------------------------~~~l~~L~~L 493 (636)
T 4eco_A 474 KNSLKDENEN------------------------------------------------------------FKNTYLLTSI 493 (636)
T ss_dssp SSSSEETTEE------------------------------------------------------------CTTGGGCCEE
T ss_pred HHHhcccccc------------------------------------------------------------ccccCCccEE
Confidence 3322100000 0015589999
Q ss_pred EccCCCCCCCCCcccc--CccCCCeeeccCCcCCccchhhhhccccCCeEeC------CCCcccccCchhcccCCCCCEE
Q 037792 360 DLSNNELTGDIPSEIG--DLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDL------SHNKLNGQIPPQLTELHSLSTF 431 (558)
Q Consensus 360 ~Ls~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L------s~N~i~~~~~~~l~~l~~L~~L 431 (558)
++++|.++ .+|..+. .+++|++|+|++|++++ +|..+..+++|+.|++ ++|++.+.+|..+..+++|++|
T Consensus 494 ~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L 571 (636)
T 4eco_A 494 DLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL 571 (636)
T ss_dssp ECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred ECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEE
Confidence 99999999 7788776 99999999999999997 8888999999999999 5677888999999999999999
Q ss_pred ecCCCCCcCCCCCCcccCCCCcccccCCCCCCCC
Q 037792 432 DVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGP 465 (558)
Q Consensus 432 ~l~~N~l~~~~p~~~~~~~l~~~~~~~N~~~C~~ 465 (558)
++++|++ +.+|.. .++.++.+++++|++.|-.
T Consensus 572 ~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 572 QIGSNDI-RKVNEK-ITPNISVLDIKDNPNISID 603 (636)
T ss_dssp ECCSSCC-CBCCSC-CCTTCCEEECCSCTTCEEE
T ss_pred ECCCCcC-CccCHh-HhCcCCEEECcCCCCcccc
Confidence 9999999 567764 3388999999999998743
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-43 Score=376.72 Aligned_cols=408 Identities=19% Similarity=0.204 Sum_probs=305.7
Q ss_pred CCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCE
Q 037792 7 QHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEW 86 (558)
Q Consensus 7 ~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 86 (558)
.+++++|++++|.++ .++...+..+++|++|++++|.+++..+.+|.++++|++|++++|.++ .+++..+.++++|++
T Consensus 27 ~~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 104 (570)
T 2z63_A 27 PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQK 104 (570)
T ss_dssp CSSCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCE
T ss_pred cccccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCcccccc
Confidence 346888888888887 555555555888888888888888777777888888888888888887 555555677888888
Q ss_pred EEccCCccCccCchhhcCCCccCeeecccccccc-ccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCC----cEEEc
Q 037792 87 LDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSG-KIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTL----QILSM 161 (558)
Q Consensus 87 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L----~~L~L 161 (558)
|++++|.+.+..+..+.++++|++|++++|.+.+ ..|..+.++++|++|++++|.+++..+..++.+++| +.+++
T Consensus 105 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l 184 (570)
T 2z63_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (570)
T ss_dssp EECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred ccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhccc
Confidence 8888888876555567888888888888888775 357778888888888888888776666666655555 56666
Q ss_pred ccCcCcccch----------------------------------------------------------------------
Q 037792 162 SKNLLEGNIP---------------------------------------------------------------------- 171 (558)
Q Consensus 162 ~~n~l~~~~~---------------------------------------------------------------------- 171 (558)
++|.+.+..+
T Consensus 185 ~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 264 (570)
T 2z63_A 185 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264 (570)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred CCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence 6665543333
Q ss_pred -----------hhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCC-----
Q 037792 172 -----------VQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRIN----- 235 (558)
Q Consensus 172 -----------~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n----- 235 (558)
..+..+++|+.|++++|.+.+.+.....+ +|++|++++|.+. .+|. ..+++|+.|++++|
T Consensus 265 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~ 340 (570)
T 2z63_A 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNA 340 (570)
T ss_dssp EETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCB
T ss_pred hcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCccccc
Confidence 33445566777777777776655444455 7777777777776 3443 35678888888776
Q ss_pred ----CCCCcCEEEccCCcCCCCc--hhhccCCCCCCEEEcccCcCccccChhhhcccc---cccccCccccccchhhhcc
Q 037792 236 ----EHSNLRTLLLRGNYLQGPI--PHQLCHLRKLGIMDISHNRLNGSIPACITNMLF---SRVENGYLYGFDIVLRMYL 306 (558)
Q Consensus 236 ----~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~---~~~~~~~~~~~~~~~~~~~ 306 (558)
.+++|++|++++|.+++.. +..+..+++|++|++++|++.+..+. +..++. ..+..+.+.+...
T Consensus 341 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~------ 413 (570)
T 2z63_A 341 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSE------ 413 (570)
T ss_dssp CCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTT------
T ss_pred cccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccc------
Confidence 4678999999999988554 67888999999999999998754332 433221 1111110000000
Q ss_pred cccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeecc
Q 037792 307 DDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLS 386 (558)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 386 (558)
...+ ..+++|+.|++++|.+.+..|..+..+++|++|+++
T Consensus 414 --------------------------------------~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 453 (570)
T 2z63_A 414 --------------------------------------FSVF--LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453 (570)
T ss_dssp --------------------------------------SCTT--TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred --------------------------------------hhhh--hcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECc
Confidence 0000 117899999999999998899999999999999999
Q ss_pred CCcCC-ccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCC-CcccCCCCcccccCCCCCCC
Q 037792 387 HNFLS-GSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD-KEQFSTFDESSYRGNLFLCG 464 (558)
Q Consensus 387 ~N~l~-~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~~~l~~~~~~~N~~~C~ 464 (558)
+|.++ +.+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|. ...++.++.+++++||+.|+
T Consensus 454 ~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 99998 57889999999999999999999999899999999999999999999987776 46778899999999999999
Q ss_pred CCC
Q 037792 465 PAI 467 (558)
Q Consensus 465 ~~~ 467 (558)
|+.
T Consensus 534 ~~~ 536 (570)
T 2z63_A 534 CPR 536 (570)
T ss_dssp TTT
T ss_pred Ccc
Confidence 864
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-43 Score=364.41 Aligned_cols=362 Identities=20% Similarity=0.235 Sum_probs=278.9
Q ss_pred ccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEc
Q 037792 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDL 89 (558)
Q Consensus 10 L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 89 (558)
-+.++.+++.++ .+|. + .++|++|++++|.+++..|..|.++++|++|++++|.+.+.++...+.++++|++|++
T Consensus 12 ~~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 12 GYNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp TTEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred ccccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence 356889999998 8987 3 4799999999999998889999999999999999999987887777789999999999
Q ss_pred cCCccCccCchhhcCCCccCeeeccccccccccchh--hcCCCCCCEEEccCCcCCCCCccc-ccCCCCCcEEEcccCcC
Q 037792 90 SNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDG--LLRSTELMVLDISNNRLSGHIPSW-MGNFSTLQILSMSKNLL 166 (558)
Q Consensus 90 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l 166 (558)
++|.+.+..+..+.++++|++|++++|.+++..+.. +..+++|++|++++|.+++..|.. +.++++|++|++++|.+
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 999999888899999999999999999998755544 889999999999999999887776 88999999999999999
Q ss_pred cccchhhhcCC--cccceeeccccccccccCCC---------cCCCCccEEEccCCcCcccchhhhhCC---CCCcEEEc
Q 037792 167 EGNIPVQFNNL--ASLQILNISENNLSGSMIST---------LNLSSVEHLYLQNNALGGSIPNTFFRG---SALETLDL 232 (558)
Q Consensus 167 ~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~---------~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~L~~L~l 232 (558)
.+..+..+..+ .+|+.|++++|.+....... +.+++|++|++++|.+.+..+..+... ++|+.|++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 98888888766 68999999999998765443 245789999999999998888777554 78888888
Q ss_pred CCCC-----------------------CCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccc
Q 037792 233 RINE-----------------------HSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSR 289 (558)
Q Consensus 233 ~~n~-----------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~ 289 (558)
++|. .++|+.|++++|.+++..|..+..+++|++|++++|++++..|..+.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~----- 321 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG----- 321 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-----
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC-----
Confidence 8762 245666666666666555666666666666666666665444444333
Q ss_pred cccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCC
Q 037792 290 VENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGD 369 (558)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 369 (558)
+++|+.|++++|.+++.
T Consensus 322 ---------------------------------------------------------------l~~L~~L~Ls~N~l~~~ 338 (455)
T 3v47_A 322 ---------------------------------------------------------------LTHLLKLNLSQNFLGSI 338 (455)
T ss_dssp ---------------------------------------------------------------CTTCCEEECCSSCCCEE
T ss_pred ---------------------------------------------------------------cccCCEEECCCCccCCc
Confidence 45566666666666655
Q ss_pred CCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCC
Q 037792 370 IPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD 444 (558)
Q Consensus 370 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 444 (558)
.+..+..+++|++|++++|++++..|..|..+++|++|++++|++++..+..+..+++|++|++++|+++|.+|.
T Consensus 339 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 339 DSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 555666666666666666666655566666666666666666666655555556666666666666666666664
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-43 Score=382.23 Aligned_cols=386 Identities=20% Similarity=0.260 Sum_probs=320.8
Q ss_pred CCccEEEccCCcCCCCCChhhhhcCCCccEEEc-cCCcCCCC--------------------------------------
Q 037792 8 HGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNI-SKNSFEGN-------------------------------------- 48 (558)
Q Consensus 8 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~L-s~n~i~~~-------------------------------------- 48 (558)
.+++.|+|+++.+.|.+|+.+.. +++|++|+| ++|.+++.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~-L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQ-LTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGG-CTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCcCchHHhc-cccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 57999999999999999988876 999999999 77644322
Q ss_pred --------------------------------------CchhhhCCCCCCEEEcccccCCc-----------------cc
Q 037792 49 --------------------------------------IPSSIGKMQGLRLLDVSSNNFAG-----------------EL 73 (558)
Q Consensus 49 --------------------------------------~~~~~~~l~~L~~L~L~~n~l~~-----------------~~ 73 (558)
+|..++++++|++|+|++|.+++ .+
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 78889999999999999999996 27
Q ss_pred hHHH-HhcCCCCCEEEccCCccCccCchhhcCCCccCeeeccccc-ccc-ccchhhcCCC-------CCCEEEccCCcCC
Q 037792 74 SQSL-VINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNN-FSG-KIKDGLLRST-------ELMVLDISNNRLS 143 (558)
Q Consensus 74 ~~~~-~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-i~~-~~~~~~~~l~-------~L~~L~L~~n~l~ 143 (558)
|..+ |.++++|++|++++|.+.+.+|..+.++++|+.|++++|. +++ ..|..+..++ +|+.|++++|.++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 8776 3489999999999999999999999999999999999998 887 6777665554 9999999999999
Q ss_pred CCCcc--cccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCCCcCCCC-ccEEEccCCcCcccchhh
Q 037792 144 GHIPS--WMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSS-VEHLYLQNNALGGSIPNT 220 (558)
Q Consensus 144 ~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~~ 220 (558)
.+|. .++++++|+.|++++|.+. .+| .++.+++|+.|++++|.+...+..+..+++ |++|++++|.++ .+|..
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~ 637 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNI 637 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSC
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchh
Confidence 7888 8999999999999999998 777 899999999999999999966656557888 999999999998 77777
Q ss_pred hhCCC--CCcEEEcCCCCC----------------CCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhh
Q 037792 221 FFRGS--ALETLDLRINEH----------------SNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACI 282 (558)
Q Consensus 221 ~~~~~--~L~~L~l~~n~~----------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~ 282 (558)
+...+ +|+.|++++|.+ ++|+.|++++|.++...+..+..+++|+.|++++|+++ .+|..+
T Consensus 638 ~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 716 (876)
T 4ecn_A 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENS 716 (876)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTS
T ss_pred hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHH
Confidence 76664 499999999843 27889999999998555555668899999999999987 555543
Q ss_pred hcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEcc
Q 037792 283 TNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLS 362 (558)
Q Consensus 283 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls 362 (558)
........ ..+++|+.|+++
T Consensus 717 ~~~~~~~l------------------------------------------------------------~nl~~L~~L~Ls 736 (876)
T 4ecn_A 717 LKPKDGNY------------------------------------------------------------KNTYLLTTIDLR 736 (876)
T ss_dssp SSCTTSCC------------------------------------------------------------TTGGGCCEEECC
T ss_pred hccccccc------------------------------------------------------------cccCCccEEECC
Confidence 22100000 005689999999
Q ss_pred CCCCCCCCCcccc--CccCCCeeeccCCcCCccchhhhhccccCCeEeCCC------CcccccCchhcccCCCCCEEecC
Q 037792 363 NNELTGDIPSEIG--DLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSH------NKLNGQIPPQLTELHSLSTFDVS 434 (558)
Q Consensus 363 ~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~------N~i~~~~~~~l~~l~~L~~L~l~ 434 (558)
+|+++ .+|..+. .+++|++|+|++|.+++ +|..+..+++|+.|+|++ |.+.+.+|..+..+++|+.|+++
T Consensus 737 ~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls 814 (876)
T 4ecn_A 737 FNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG 814 (876)
T ss_dssp SSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred CCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECC
Confidence 99998 6777776 89999999999999986 688888999999999976 77888889999999999999999
Q ss_pred CCCCcCCCCCCcccCCCCcccccCCCCCC
Q 037792 435 YNNLSGPIPDKEQFSTFDESSYRGNLFLC 463 (558)
Q Consensus 435 ~N~l~~~~p~~~~~~~l~~~~~~~N~~~C 463 (558)
+|++ +.+|.. .++.++.+++++|++..
T Consensus 815 ~N~L-~~Ip~~-l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 815 SNDI-RKVDEK-LTPQLYILDIADNPNIS 841 (876)
T ss_dssp SSCC-CBCCSC-CCSSSCEEECCSCTTCE
T ss_pred CCCC-CccCHh-hcCCCCEEECCCCCCCc
Confidence 9999 577764 33688889999988754
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-43 Score=388.56 Aligned_cols=426 Identities=21% Similarity=0.209 Sum_probs=277.3
Q ss_pred CCcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHH-HHhcCC
Q 037792 4 TSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQS-LVINCF 82 (558)
Q Consensus 4 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~l~ 82 (558)
++++++|++|++++|...+.++...+..+++|++|+|++|.+++..|.+|.++++|++|++++|.+++.++.. .+.+++
T Consensus 44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~ 123 (844)
T 3j0a_A 44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123 (844)
T ss_dssp CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence 5667777777777775555665555555777777777777777666777777777777777777776544432 346677
Q ss_pred CCCEEEccCCccCccCc-hhhcCCCccCeeeccccccccccchhhcCC--------------------------------
Q 037792 83 SLEWLDLSNNNFVGQIF-PNYMNLTRLWALYLYNNNFSGKIKDGLLRS-------------------------------- 129 (558)
Q Consensus 83 ~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l-------------------------------- 129 (558)
+|++|++++|.+.+..+ ..|.++++|++|++++|.+++..+..+..+
T Consensus 124 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 203 (844)
T 3j0a_A 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN 203 (844)
T ss_dssp SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTT
T ss_pred CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcccc
Confidence 77777777777765443 356777777777777766654333322111
Q ss_pred --------------------------------------------------------------CCCCEEEccCCcCCCCCc
Q 037792 130 --------------------------------------------------------------TELMVLDISNNRLSGHIP 147 (558)
Q Consensus 130 --------------------------------------------------------------~~L~~L~L~~n~l~~~~~ 147 (558)
++|+.|++++|.+.+..+
T Consensus 204 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~ 283 (844)
T 3j0a_A 204 MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS 283 (844)
T ss_dssp CCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS
T ss_pred CceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccCh
Confidence 234444444444444444
Q ss_pred ccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCC
Q 037792 148 SWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSA 226 (558)
Q Consensus 148 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 226 (558)
..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+++..+..+ .+++|++|++++|.+.+..+..+..+++
T Consensus 284 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 363 (844)
T 3j0a_A 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK 363 (844)
T ss_dssp CCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCC
T ss_pred hhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCC
Confidence 555666666666666666666666666666677777777776666544444 6667777777777766555566666677
Q ss_pred CcEEEcCCCC------CCCcCEEEccCCcCCCC---------------------chhhccCCCCCCEEEcccCcCccccC
Q 037792 227 LETLDLRINE------HSNLRTLLLRGNYLQGP---------------------IPHQLCHLRKLGIMDISHNRLNGSIP 279 (558)
Q Consensus 227 L~~L~l~~n~------~~~L~~L~l~~n~l~~~---------------------~~~~~~~l~~L~~L~l~~n~l~~~~p 279 (558)
|+.|++++|. +++|+.|++++|.++.. .+..+..+++|+.|++++|++++..+
T Consensus 364 L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 443 (844)
T 3j0a_A 364 LQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG 443 (844)
T ss_dssp CCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCS
T ss_pred CCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccc
Confidence 7777777663 23455555555554421 12234578999999999999975433
Q ss_pred h----hhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcc
Q 037792 280 A----CITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILEL 355 (558)
Q Consensus 280 ~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 355 (558)
. ...++....+..+.+.+.... ......+.+ +++
T Consensus 444 ~~~~~~~~~L~~L~Ls~N~l~~~~~~----------------------------------------~~~~~~~~~--l~~ 481 (844)
T 3j0a_A 444 DQTPSENPSLEQLFLGENMLQLAWET----------------------------------------ELCWDVFEG--LSH 481 (844)
T ss_dssp SSSSCSCTTCCBCEEESCCCSSSCCS----------------------------------------CCCSSCSSC--BCC
T ss_pred ccccccCCccccccCCCCcccccccc----------------------------------------ccchhhhcC--ccc
Confidence 2 112222222211111100000 000000111 688
Q ss_pred cCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCC
Q 037792 356 MAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSY 435 (558)
Q Consensus 356 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~ 435 (558)
|+.|++++|.+++..|..|..+++|++|+|++|++++..+..+. ++|+.|++++|++++.+|..+ ++|+.|++++
T Consensus 482 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~ 556 (844)
T 3j0a_A 482 LQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITH 556 (844)
T ss_dssp EECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEE
T ss_pred ccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecC
Confidence 99999999999999999999999999999999999987777766 899999999999999888775 4799999999
Q ss_pred CCCcCCCCCCcccCCCCcccccCCCCCCCCCCCCCCCCCCCCCCC
Q 037792 436 NNLSGPIPDKEQFSTFDESSYRGNLFLCGPAINKGCTNLPELLEP 480 (558)
Q Consensus 436 N~l~~~~p~~~~~~~l~~~~~~~N~~~C~~~~~~~c~~~~~~~~~ 480 (558)
|++.|.++..+...++ ...|...|+.+....|..|+...+.
T Consensus 557 Np~~C~c~~~~f~~~~----~~~~~~~~~~~~~~~C~~p~~~~g~ 597 (844)
T 3j0a_A 557 NKFICECELSTFINWL----NHTNVTIAGPPADIYCVYPDSFSGV 597 (844)
T ss_dssp ECCCCSSSCCSHHHHH----HHTTTTTCCCGGGCCCSSCSSSCSC
T ss_pred CCcccccccHHHHHHH----HhcCcccccccccCccCCchhhCCC
Confidence 9999988854332221 2345666777777788877655443
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-43 Score=376.63 Aligned_cols=341 Identities=20% Similarity=0.290 Sum_probs=299.3
Q ss_pred CChhhhhcCCCccEEEccCCcCCCC-----------------Cchhhh--CCCCCCEEEcccccCCccchHHHHhcCCCC
Q 037792 24 LPQNMGIVLPKLVYMNISKNSFEGN-----------------IPSSIG--KMQGLRLLDVSSNNFAGELSQSLVINCFSL 84 (558)
Q Consensus 24 ~p~~~~~~l~~L~~L~Ls~n~i~~~-----------------~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 84 (558)
+|..+.. +++|++|++++|.+++. +|..++ ++++|++|++++|.+.+.+|..+ .++++|
T Consensus 198 ip~~l~~-l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L 275 (636)
T 4eco_A 198 VSKAVMR-LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEM 275 (636)
T ss_dssp ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSC
T ss_pred CCHHHhc-ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCC
Confidence 7777665 99999999999999985 899988 99999999999999998888765 789999
Q ss_pred CEEEccCCc-cCc-cCchhhcCC------CccCeeeccccccccccch--hhcCCCCCCEEEccCCcCCCCCcccccCCC
Q 037792 85 EWLDLSNNN-FVG-QIFPNYMNL------TRLWALYLYNNNFSGKIKD--GLLRSTELMVLDISNNRLSGHIPSWMGNFS 154 (558)
Q Consensus 85 ~~L~l~~n~-i~~-~~~~~~~~l------~~L~~L~l~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 154 (558)
++|++++|+ +++ .+|..+.++ ++|++|++++|.++ .+|. .+.++++|++|++++|.+++.+| .+..++
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~ 353 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI 353 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEE
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCC
Confidence 999999998 887 788888776 99999999999999 6777 89999999999999999998888 899999
Q ss_pred CCcEEEcccCcCcccchhhhcCCcc-cceeeccccccccccCCCcC--CCCccEEEccCCcCcccchhhhh-------CC
Q 037792 155 TLQILSMSKNLLEGNIPVQFNNLAS-LQILNISENNLSGSMISTLN--LSSVEHLYLQNNALGGSIPNTFF-------RG 224 (558)
Q Consensus 155 ~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~i~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~-------~~ 224 (558)
+|+.|++++|.+. .+|..+..+++ |+.|++++|.++..+..+.. +++|++|++++|.+.+..|..+. .+
T Consensus 354 ~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~ 432 (636)
T 4eco_A 354 KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432 (636)
T ss_dssp EESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC
T ss_pred CCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccC
Confidence 9999999999999 78888999999 99999999999966654443 45899999999999998888887 77
Q ss_pred CCCcEEEcCCC-----------CCCCcCEEEccCCcCCCCchhhccCC-------CCCCEEEcccCcCccccChhhh--c
Q 037792 225 SALETLDLRIN-----------EHSNLRTLLLRGNYLQGPIPHQLCHL-------RKLGIMDISHNRLNGSIPACIT--N 284 (558)
Q Consensus 225 ~~L~~L~l~~n-----------~~~~L~~L~l~~n~l~~~~~~~~~~l-------~~L~~L~l~~n~l~~~~p~~~~--~ 284 (558)
++|+.|++++| .+++|++|++++|.++...+..+... ++|++|++++|+++ .+|..+. .
T Consensus 433 ~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~ 511 (636)
T 4eco_A 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATT 511 (636)
T ss_dssp CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTT
T ss_pred CCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhcc
Confidence 89999999998 36889999999999994444444433 39999999999998 6666543 2
Q ss_pred ccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCC
Q 037792 285 MLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNN 364 (558)
Q Consensus 285 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n 364 (558)
+++|+.|++++|
T Consensus 512 --------------------------------------------------------------------l~~L~~L~Ls~N 523 (636)
T 4eco_A 512 --------------------------------------------------------------------LPYLVGIDLSYN 523 (636)
T ss_dssp --------------------------------------------------------------------CTTCCEEECCSS
T ss_pred --------------------------------------------------------------------CCCcCEEECCCC
Confidence 788999999999
Q ss_pred CCCCCCCccccCccCCCeeec------cCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCC
Q 037792 365 ELTGDIPSEIGDLQNIHGLNL------SHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNL 438 (558)
Q Consensus 365 ~l~~~~~~~~~~l~~L~~L~L------s~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l 438 (558)
.+++ +|..+..+++|++|++ ++|.+.+.+|..+..+++|++|++++|++. .+|..+. ++|+.|++++|++
T Consensus 524 ~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l 599 (636)
T 4eco_A 524 SFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPN 599 (636)
T ss_dssp CCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTT
T ss_pred CCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCC
Confidence 9996 8889999999999999 567888899999999999999999999995 6777665 7999999999999
Q ss_pred cCCC
Q 037792 439 SGPI 442 (558)
Q Consensus 439 ~~~~ 442 (558)
.+.-
T Consensus 600 ~~~~ 603 (636)
T 4eco_A 600 ISID 603 (636)
T ss_dssp CEEE
T ss_pred cccc
Confidence 8643
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-41 Score=362.74 Aligned_cols=402 Identities=17% Similarity=0.166 Sum_probs=306.3
Q ss_pred ccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEc
Q 037792 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDL 89 (558)
Q Consensus 10 L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 89 (558)
-++++.++..++ .+|..+. +++++|++++|.+++..|.+|.++++|++|++++|.++ .+++..+.++++|++|++
T Consensus 14 ~~~~~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L 88 (606)
T 3t6q_A 14 NKTYNCENLGLN-EIPGTLP---NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVL 88 (606)
T ss_dssp TTEEECTTSCCS-SCCTTSC---TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEEC
T ss_pred CceEECCCCCcc-cCcCCCC---CcCcEEEccCCccCcCChhHhccCccceEEECCCCccc-eeChhhccCccccCeeeC
Confidence 457899999999 9998875 48999999999999888999999999999999999999 455555689999999999
Q ss_pred cCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCccc
Q 037792 90 SNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGN 169 (558)
Q Consensus 90 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (558)
++|.+.+..+..|.++++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..+.++++|+.|++++|.+.+.
T Consensus 89 s~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 168 (606)
T 3t6q_A 89 TANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL 168 (606)
T ss_dssp TTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEE
T ss_pred CCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccccc
Confidence 99999988888999999999999999999987788899999999999999999975545566699999999999999988
Q ss_pred chhhhcCCcccc--eeeccccccccccCCCcCCCCccE------------------------------------------
Q 037792 170 IPVQFNNLASLQ--ILNISENNLSGSMISTLNLSSVEH------------------------------------------ 205 (558)
Q Consensus 170 ~~~~~~~l~~L~--~L~L~~n~i~~~~~~~~~~~~L~~------------------------------------------ 205 (558)
.+..++.+++|+ .|++++|.+.+.++..+...+|++
T Consensus 169 ~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~ 248 (606)
T 3t6q_A 169 SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248 (606)
T ss_dssp CHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGG
T ss_pred ChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHh
Confidence 899999999999 899999999988776665444444
Q ss_pred ----------EEccCCcCcccchhhhhCCCCCcEEEcCCC----------CCCCcCEEEccCCcCCCCchhhccCCCCCC
Q 037792 206 ----------LYLQNNALGGSIPNTFFRGSALETLDLRIN----------EHSNLRTLLLRGNYLQGPIPHQLCHLRKLG 265 (558)
Q Consensus 206 ----------L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n----------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 265 (558)
|++++|.+++..+..+..+++|+.|++++| .+++|++|++++|.+++..|..+..+++|+
T Consensus 249 ~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 328 (606)
T 3t6q_A 249 EGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLT 328 (606)
T ss_dssp GGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCS
T ss_pred chhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCC
Confidence 445555554444444555555555555555 234455555555555544455555555555
Q ss_pred EEEcccCcCccccChh-hhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccc
Q 037792 266 IMDISHNRLNGSIPAC-ITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNR 344 (558)
Q Consensus 266 ~L~l~~n~l~~~~p~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (558)
+|++++|.+.+.+|.. +..++... .+ .+..+.
T Consensus 329 ~L~l~~n~~~~~~~~~~~~~l~~L~----------------------------------------------~L-~l~~n~ 361 (606)
T 3t6q_A 329 HLSIKGNTKRLELGTGCLENLENLR----------------------------------------------EL-DLSHDD 361 (606)
T ss_dssp EEECCSCSSCCBCCSSTTTTCTTCC----------------------------------------------EE-ECCSSC
T ss_pred EEECCCCCcccccchhhhhccCcCC----------------------------------------------EE-ECCCCc
Confidence 5555555554333321 22211100 00 001111
Q ss_pred cccc-----cchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchh-hhhccccCCeEeCCCCcccccC
Q 037792 345 YESY-----KGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPE-SFSNLKMIESLDLSHNKLNGQI 418 (558)
Q Consensus 345 ~~~~-----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~i~~~~ 418 (558)
.... .-..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..+. .+..+++|++|++++|.+.+..
T Consensus 362 l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 441 (606)
T 3t6q_A 362 IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS 441 (606)
T ss_dssp CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTC
T ss_pred cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcC
Confidence 1000 001278999999999999988888999999999999999999877654 4899999999999999999888
Q ss_pred chhcccCCCCCEEecCCCCCcCC-CCC---CcccCCCCcccccCCCCCC
Q 037792 419 PPQLTELHSLSTFDVSYNNLSGP-IPD---KEQFSTFDESSYRGNLFLC 463 (558)
Q Consensus 419 ~~~l~~l~~L~~L~l~~N~l~~~-~p~---~~~~~~l~~~~~~~N~~~C 463 (558)
|..+..+++|++|++++|++++. +|. ...++.++.+++++|...-
T Consensus 442 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 490 (606)
T 3t6q_A 442 EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490 (606)
T ss_dssp TTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred HHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc
Confidence 99999999999999999999863 222 4566788889999887643
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-41 Score=365.55 Aligned_cols=412 Identities=19% Similarity=0.158 Sum_probs=288.0
Q ss_pred CCcC-CCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCC
Q 037792 4 TSAQ-HGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCF 82 (558)
Q Consensus 4 ~~~~-~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 82 (558)
++.+ +++++|||++|.++ .+|...|.++++|++|+|++|.|+++.+.+|.++++|++|+|++|+++ .+|...|.+++
T Consensus 47 P~~lp~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~ 124 (635)
T 4g8a_A 47 PDNLPFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLS 124 (635)
T ss_dssp CSSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCT
T ss_pred CCCCCcCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCC
Confidence 4444 47899999999998 788777777999999999999999887888999999999999999998 78877788999
Q ss_pred CCCEEEccCCccCccCchhhcCCCccCeeeccccccccc-cchhhcCCCCCCEEEccCCcCCCCCcccccCCCC----Cc
Q 037792 83 SLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGK-IKDGLLRSTELMVLDISNNRLSGHIPSWMGNFST----LQ 157 (558)
Q Consensus 83 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~----L~ 157 (558)
+|++|++++|++++..+..|+++++|++|++++|.++.. .+..+..+++|++|++++|++++..+..+..+.+ ..
T Consensus 125 ~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~ 204 (635)
T 4g8a_A 125 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 204 (635)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCC
T ss_pred CCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhh
Confidence 999999999999877667789999999999999998753 5677888999999999999888766665544322 22
Q ss_pred EEEcccCcCcccchhh------------------------hcCCc-----------------------------------
Q 037792 158 ILSMSKNLLEGNIPVQ------------------------FNNLA----------------------------------- 178 (558)
Q Consensus 158 ~L~L~~n~l~~~~~~~------------------------~~~l~----------------------------------- 178 (558)
.++++.|.+....+.. +..+.
T Consensus 205 ~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 284 (635)
T 4g8a_A 205 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 284 (635)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEE
T ss_pred hhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhh
Confidence 4445444443211111 11111
Q ss_pred ----------------------ccceeeccccccccccCCCcCCCCccEEEccCCcCcccch------------------
Q 037792 179 ----------------------SLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIP------------------ 218 (558)
Q Consensus 179 ----------------------~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~------------------ 218 (558)
+++.+.+.++.+..... ......++.|++.+|.+....+
T Consensus 285 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 363 (635)
T 4g8a_A 285 EFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN 363 (635)
T ss_dssp EEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG-GGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCC
T ss_pred hhhhhhhcccccchhhhhhhhcccccccccccccccccc-cccchhhhhhhcccccccCcCcccchhhhhcccccccCCC
Confidence 11222222222111110 0123345555555554432211
Q ss_pred -hhhhCCCCCcEEEcCCC-------------CCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccCh-hhh
Q 037792 219 -NTFFRGSALETLDLRIN-------------EHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPA-CIT 283 (558)
Q Consensus 219 -~~~~~~~~L~~L~l~~n-------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~~~ 283 (558)
.....+++|+.++++.| ...+++.+++..+.... .+..+..+++|+.+++..+......+. .+.
T Consensus 364 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~ 442 (635)
T 4g8a_A 364 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 442 (635)
T ss_dssp BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTT
T ss_pred Ccccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhccccccccccccc
Confidence 11234566777777766 23566777777666553 344567778888888887766543332 222
Q ss_pred cccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeeccccccccc---chhhcccCEEE
Q 037792 284 NMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYK---GDILELMAGLD 360 (558)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~L~~L~ 360 (558)
.+..... .....+...... ...++.++.|+
T Consensus 443 ~l~~l~~-----------------------------------------------l~ls~n~l~~~~~~~~~~~~~L~~L~ 475 (635)
T 4g8a_A 443 SLRNLIY-----------------------------------------------LDISHTHTRVAFNGIFNGLSSLEVLK 475 (635)
T ss_dssp TCTTCCE-----------------------------------------------EECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred ccccccc-----------------------------------------------ccccccccccccccccccchhhhhhh
Confidence 2211100 000000000000 01168899999
Q ss_pred ccCCCC-CCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCc
Q 037792 361 LSNNEL-TGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLS 439 (558)
Q Consensus 361 Ls~n~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~ 439 (558)
+++|.+ .+..|..|..+++|++|+|++|++++..|..|+++++|++|+|++|+|++..|..|..+++|++|++++|+++
T Consensus 476 Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~ 555 (635)
T 4g8a_A 476 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 555 (635)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCC
T ss_pred hhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCC
Confidence 999985 4457888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC-Cccc-CCCCcccccCCCCCCCCC
Q 037792 440 GPIPD-KEQF-STFDESSYRGNLFLCGPA 466 (558)
Q Consensus 440 ~~~p~-~~~~-~~l~~~~~~~N~~~C~~~ 466 (558)
+..|. ...+ ++++.+++++|||.|+|.
T Consensus 556 ~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 556 TSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp BCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 98887 3333 678999999999999995
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=357.94 Aligned_cols=401 Identities=20% Similarity=0.211 Sum_probs=273.7
Q ss_pred CCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEE
Q 037792 8 HGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWL 87 (558)
Q Consensus 8 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 87 (558)
++|++|++++|.++ .++...+..+++|++|++++|.+++..|.+|.++++|++|++++|.++ .+|.. .+++|++|
T Consensus 21 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L 95 (520)
T 2z7x_B 21 QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHL 95 (520)
T ss_dssp TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEE
T ss_pred ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEE
Confidence 67888888888887 555555555888888888888888777778888888888888888887 67764 67888888
Q ss_pred EccCCccCc-cCchhhcCCCccCeeeccccccccccchhhcCCCCC--CEEEccCCcC--CCCCcccccC----------
Q 037792 88 DLSNNNFVG-QIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTEL--MVLDISNNRL--SGHIPSWMGN---------- 152 (558)
Q Consensus 88 ~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~~~~---------- 152 (558)
++++|.+.+ ..|..++++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+..|..+..
T Consensus 96 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l 172 (520)
T 2z7x_B 96 DLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF 172 (520)
T ss_dssp ECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEEC
T ss_pred eccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEe
Confidence 888888876 356778888888888888888764 345566666 8888888877 5555554444
Q ss_pred ----------------CCCCcEEEcccCc-------CcccchhhhcCCcccceeeccccccccccCCCc----CCCCccE
Q 037792 153 ----------------FSTLQILSMSKNL-------LEGNIPVQFNNLASLQILNISENNLSGSMISTL----NLSSVEH 205 (558)
Q Consensus 153 ----------------l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~----~~~~L~~ 205 (558)
+++|+.+++++|. +.+..+ .+..+++|+.|++++|.+.+...... ..++|++
T Consensus 173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~ 251 (520)
T 2z7x_B 173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWY 251 (520)
T ss_dssp CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSE
T ss_pred ccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccE
Confidence 4555666666654 333333 45555666666666555543211111 2346777
Q ss_pred EEccCCcCcccchhhh-----hCCCCCcEEEcCCCCC-------------CCcCEEEccCCcCCCCchhhccCCCCCCEE
Q 037792 206 LYLQNNALGGSIPNTF-----FRGSALETLDLRINEH-------------SNLRTLLLRGNYLQGPIPHQLCHLRKLGIM 267 (558)
Q Consensus 206 L~l~~n~l~~~~~~~~-----~~~~~L~~L~l~~n~~-------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 267 (558)
|++++|.+.+.+|..+ ..++.|+.++++.|.+ .+|+.|++++|.+.... ....+++|++|
T Consensus 252 L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L 329 (520)
T 2z7x_B 252 FSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHL 329 (520)
T ss_dssp EEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEE
T ss_pred EEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEE
Confidence 7777777776666666 6666666666666543 34666666666654321 12455666666
Q ss_pred EcccCcCccccChhhhccccc---ccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccc
Q 037792 268 DISHNRLNGSIPACITNMLFS---RVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNR 344 (558)
Q Consensus 268 ~l~~n~l~~~~p~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (558)
++++|++++..|..+.+++.. .+..+.+.+......
T Consensus 330 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~----------------------------------------- 368 (520)
T 2z7x_B 330 DFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAE----------------------------------------- 368 (520)
T ss_dssp ECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHH-----------------------------------------
T ss_pred EeECCccChhhhhhhccCCCCCEEEccCCccCccccchH-----------------------------------------
Confidence 666666665555544433211 111111000000000
Q ss_pred cccccchhhcccCEEEccCCCCCCCCCc-cccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcc
Q 037792 345 YESYKGDILELMAGLDLSNNELTGDIPS-EIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLT 423 (558)
Q Consensus 345 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~ 423 (558)
.+ ..+++|+.|++++|.+++.+|. .+..+++|++|++++|++++..|..+. ++|+.|++++|+++ .+|..+.
T Consensus 369 --~~--~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~ 441 (520)
T 2z7x_B 369 --MT--TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVV 441 (520)
T ss_dssp --HH--TTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGG
T ss_pred --HH--hhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhh
Confidence 00 0178999999999999975554 488899999999999999988777665 79999999999999 6777777
Q ss_pred cCCCCCEEecCCCCCcCCCCC-CcccCCCCcccccCCCCCCCCCC
Q 037792 424 ELHSLSTFDVSYNNLSGPIPD-KEQFSTFDESSYRGNLFLCGPAI 467 (558)
Q Consensus 424 ~l~~L~~L~l~~N~l~~~~p~-~~~~~~l~~~~~~~N~~~C~~~~ 467 (558)
.+++|++|++++|+++...+. ...++.++.+++++||+.|+|+.
T Consensus 442 ~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 442 KLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred cCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 999999999999999954443 55678899999999999999953
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-41 Score=359.15 Aligned_cols=399 Identities=19% Similarity=0.176 Sum_probs=294.7
Q ss_pred CCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCE
Q 037792 7 QHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEW 86 (558)
Q Consensus 7 ~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 86 (558)
.++|++|++++|.++ .++...+..+++|++|++++|.+++..|.+|.++++|++|++++|.++ .++...+.++++|++
T Consensus 25 ~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 25 TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKY 102 (549)
T ss_dssp CTTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCE
T ss_pred CCCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-ccCHHHhccCCCCcE
Confidence 368999999999998 454444456999999999999999888889999999999999999999 566666689999999
Q ss_pred EEccCCccCcc-CchhhcCCCccCeeeccccc-cccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccC
Q 037792 87 LDLSNNNFVGQ-IFPNYMNLTRLWALYLYNNN-FSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKN 164 (558)
Q Consensus 87 L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 164 (558)
|++++|.+.+. .+..+.++++|++|++++|. +....+..+.++++|++|++++|.+++..|..+..+++|+.|++++|
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence 99999999863 45688999999999999998 44444468899999999999999999888999999999999999999
Q ss_pred cCcccchhhhcCCcccceeeccccccccccC---CCc-CCCCccEEEccCCcCcccchhh--------------------
Q 037792 165 LLEGNIPVQFNNLASLQILNISENNLSGSMI---STL-NLSSVEHLYLQNNALGGSIPNT-------------------- 220 (558)
Q Consensus 165 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~---~~~-~~~~L~~L~l~~n~l~~~~~~~-------------------- 220 (558)
.+.......+..+++|+.|++++|.+.+... ... .+++|+.|++++|.+++..+..
T Consensus 183 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 183 ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262 (549)
T ss_dssp BSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred cccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence 8874333334678899999999998877421 111 3455555555555443211111
Q ss_pred -------------------------------------------hhCCCCCcEEEcCCC-----------CCCCcCEEEcc
Q 037792 221 -------------------------------------------FFRGSALETLDLRIN-----------EHSNLRTLLLR 246 (558)
Q Consensus 221 -------------------------------------------~~~~~~L~~L~l~~n-----------~~~~L~~L~l~ 246 (558)
+...++|+.|++++| .+++|++|+++
T Consensus 263 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls 342 (549)
T 2z81_A 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLS 342 (549)
T ss_dssp EECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECC
T ss_pred ccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEcc
Confidence 112245666666665 25778888888
Q ss_pred CCcCCCCchh---hccCCCCCCEEEcccCcCccccC--hhhhccc---ccccccCccccccchhhhcccccccCcccchh
Q 037792 247 GNYLQGPIPH---QLCHLRKLGIMDISHNRLNGSIP--ACITNML---FSRVENGYLYGFDIVLRMYLDDAYVSNYYNST 318 (558)
Q Consensus 247 ~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~p--~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (558)
+|.+++..|. .+..+++|+.|++++|++++..+ ..+..++ ...+..+.+
T Consensus 343 ~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l----------------------- 399 (549)
T 2z81_A 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTF----------------------- 399 (549)
T ss_dssp SSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCC-----------------------
T ss_pred CCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCC-----------------------
Confidence 8888866543 36778888888888888864321 2232221 111111111
Q ss_pred hhhhccCCCccccccceeeeeecccccccccc--hhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchh
Q 037792 319 VELLLDGNDGRMLGALVAVNFMTKNRYESYKG--DILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPE 396 (558)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 396 (558)
..++. ..+++|++|++++|.++ .+|..+ .++|++|++++|++++.+
T Consensus 400 ---------------------------~~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~-- 447 (549)
T 2z81_A 400 ---------------------------HPMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS-- 447 (549)
T ss_dssp ---------------------------CCCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC--
T ss_pred ---------------------------ccCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc--
Confidence 11110 01678888999988887 334333 268889999999888643
Q ss_pred hhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCC-CcccCCCCcccccCCCCCCCCC
Q 037792 397 SFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD-KEQFSTFDESSYRGNLFLCGPA 466 (558)
Q Consensus 397 ~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~~~l~~~~~~~N~~~C~~~ 466 (558)
..+++|++|++++|+++ .+|. ...+++|++|++++|++++.+|. ...++.++.+++++||+.|+|+
T Consensus 448 --~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 448 --LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp --CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred --ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 57889999999999998 5555 45789999999999999987776 5677888999999999999986
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-41 Score=365.08 Aligned_cols=443 Identities=22% Similarity=0.256 Sum_probs=277.4
Q ss_pred CCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEE
Q 037792 8 HGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWL 87 (558)
Q Consensus 8 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 87 (558)
+++++|++++|.++ .+|...+..+++|++|++++|.+++..|.+|+++++|++|++++|.++ .+|...+.++++|++|
T Consensus 25 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 25 TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTEL 102 (680)
T ss_dssp TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEE
T ss_pred CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEE
Confidence 67888888888888 566665556888888888888888888888888888888888888888 6776666788888888
Q ss_pred EccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCccccc--CCCCCcEEEcccCc
Q 037792 88 DLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMG--NFSTLQILSMSKNL 165 (558)
Q Consensus 88 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~ 165 (558)
++++|.+.+..+..|.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+. .+++|+.|++++|.
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 8888888776667788888888888888888877777777888888888888888766665443 44677777777777
Q ss_pred CcccchhhhcCC---------------------------cccceeeccccccccccCCCc-CC--CCccEEEccCCcCcc
Q 037792 166 LEGNIPVQFNNL---------------------------ASLQILNISENNLSGSMISTL-NL--SSVEHLYLQNNALGG 215 (558)
Q Consensus 166 l~~~~~~~~~~l---------------------------~~L~~L~L~~n~i~~~~~~~~-~~--~~L~~L~l~~n~l~~ 215 (558)
+.+..+..+..+ ++|+.|++++|.+.+..+..+ .+ ++|++|++++|.+++
T Consensus 183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~ 262 (680)
T 1ziw_A 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262 (680)
T ss_dssp CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc
Confidence 765555544433 234444444554444433333 22 235555555555555
Q ss_pred cchhhhhCCCCCcEEEcCCC-----------CCCCcCEEEccCCcCCC-----Cch----hhccCCCCCCEEEcccCcCc
Q 037792 216 SIPNTFFRGSALETLDLRIN-----------EHSNLRTLLLRGNYLQG-----PIP----HQLCHLRKLGIMDISHNRLN 275 (558)
Q Consensus 216 ~~~~~~~~~~~L~~L~l~~n-----------~~~~L~~L~l~~n~l~~-----~~~----~~~~~l~~L~~L~l~~n~l~ 275 (558)
..+..+..+++|+.|++++| .+++|+.|++++|...+ .+| ..+..+++|++|++++|+++
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~ 342 (680)
T 1ziw_A 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC
T ss_pred cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccC
Confidence 55555555555555555555 23445555555443321 111 13445555555555555555
Q ss_pred cccChhhhcccc---cccccCccccccc------------hhhhcccccccCcccchhhhhhccCCCccccccceeeeee
Q 037792 276 GSIPACITNMLF---SRVENGYLYGFDI------------VLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFM 340 (558)
Q Consensus 276 ~~~p~~~~~l~~---~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (558)
+..+..+.+++. ..+..+.+.+... .....+.......... ... ...+....+. +
T Consensus 343 ~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~-------~~~--~~l~~L~~L~-L 412 (680)
T 1ziw_A 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES-------DAF--SWLGHLEVLD-L 412 (680)
T ss_dssp CCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECT-------TTT--TTCTTCCEEE-C
T ss_pred CCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeECh-------hhh--hCCCCCCEEe-C
Confidence 444443433221 1111111000000 0000001100000000 000 0000111111 1
Q ss_pred cccccc-cccc---hhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCC--ccchhhhhccccCCeEeCCCCcc
Q 037792 341 TKNRYE-SYKG---DILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLS--GSIPESFSNLKMIESLDLSHNKL 414 (558)
Q Consensus 341 ~~~~~~-~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~Ls~N~i 414 (558)
..+... .++. ..+++|+.|++++|.+.+..+..|..+++|++|++++|.++ +..|..|.++++|+.|++++|++
T Consensus 413 ~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l 492 (680)
T 1ziw_A 413 GLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 492 (680)
T ss_dssp CSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCC
T ss_pred CCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCC
Confidence 111111 1111 12677888888888888777788888888888888888876 45778889999999999999999
Q ss_pred cccCchhcccCCCCCEEecCCCCCcCCCC---------CCcccCCCCcccccCCCCC
Q 037792 415 NGQIPPQLTELHSLSTFDVSYNNLSGPIP---------DKEQFSTFDESSYRGNLFL 462 (558)
Q Consensus 415 ~~~~~~~l~~l~~L~~L~l~~N~l~~~~p---------~~~~~~~l~~~~~~~N~~~ 462 (558)
++..+..|..+++|++|++++|++++..+ ....++.++.+++++|...
T Consensus 493 ~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~ 549 (680)
T 1ziw_A 493 ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC
T ss_pred CcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC
Confidence 98888888999999999999999986421 1345677888888888765
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-41 Score=364.66 Aligned_cols=399 Identities=19% Similarity=0.158 Sum_probs=320.1
Q ss_pred ccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEc
Q 037792 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDL 89 (558)
Q Consensus 10 L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 89 (558)
-++++.+++.++ .+|..+. +++++|++++|.+++..+.+|.++++|++|++++|.++ .+++..+.++++|++|++
T Consensus 13 ~~~~~c~~~~l~-~ip~~~~---~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~L 87 (606)
T 3vq2_A 13 NITYQCMDQKLS-KVPDDIP---SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLIL 87 (606)
T ss_dssp TTEEECTTSCCS-SCCTTSC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEEC
T ss_pred CCceEccCCCcc-cCCCCCC---CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeEC
Confidence 468999999999 9998764 68999999999999888889999999999999999999 565555689999999999
Q ss_pred cCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCC-CCcccccCCCCCcEEEcccCcCcc
Q 037792 90 SNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSG-HIPSWMGNFSTLQILSMSKNLLEG 168 (558)
Q Consensus 90 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~ 168 (558)
++|.+.+..|..|.++++|++|++++|.+.+..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+.+
T Consensus 88 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 88 TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp TTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred CCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 9999998889999999999999999999998777889999999999999999986 569999999999999999999987
Q ss_pred cchhhhcCCcccc----eeeccccccccccCCCcC---------------------------------------------
Q 037792 169 NIPVQFNNLASLQ----ILNISENNLSGSMISTLN--------------------------------------------- 199 (558)
Q Consensus 169 ~~~~~~~~l~~L~----~L~L~~n~i~~~~~~~~~--------------------------------------------- 199 (558)
..+..++.+++|+ .|++++|.++..+...+.
T Consensus 168 ~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l 247 (606)
T 3vq2_A 168 ITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247 (606)
T ss_dssp ECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred cChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcc
Confidence 7777666555443 466666655544433332
Q ss_pred ----------------------------------------------------------CCCccEEEccCCcCcccchhhh
Q 037792 200 ----------------------------------------------------------LSSVEHLYLQNNALGGSIPNTF 221 (558)
Q Consensus 200 ----------------------------------------------------------~~~L~~L~l~~n~l~~~~~~~~ 221 (558)
+++|++|++++|.+ +.+| .+
T Consensus 248 ~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp-~~ 325 (606)
T 3vq2_A 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFP-TL 325 (606)
T ss_dssp SCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCC-CC
T ss_pred cccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccc-cC
Confidence 23444455555544 2344 22
Q ss_pred hCCCCCcEEEcCCC---------CCCCcCEEEccCCcCCCC--chhhccCCCCCCEEEcccCcCccccChhhhccccc--
Q 037792 222 FRGSALETLDLRIN---------EHSNLRTLLLRGNYLQGP--IPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFS-- 288 (558)
Q Consensus 222 ~~~~~L~~L~l~~n---------~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~-- 288 (558)
.+++|+.|++++| .+++|++|++++|.+++. .+..+..+++|++|++++|.+++ +|..+..++..
T Consensus 326 -~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~ 403 (606)
T 3vq2_A 326 -DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQH 403 (606)
T ss_dssp -CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCE
T ss_pred -CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCe
Confidence 5666777777766 567899999999998865 37889999999999999999874 44444443211
Q ss_pred -ccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCC
Q 037792 289 -RVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELT 367 (558)
Q Consensus 289 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 367 (558)
.+..+.+.+... ...+ ..+++|+.|++++|.+.
T Consensus 404 L~l~~n~l~~~~~--------------------------------------------~~~~--~~l~~L~~L~l~~n~l~ 437 (606)
T 3vq2_A 404 LDFQHSTLKRVTE--------------------------------------------FSAF--LSLEKLLYLDISYTNTK 437 (606)
T ss_dssp EECTTSEEESTTT--------------------------------------------TTTT--TTCTTCCEEECTTSCCE
T ss_pred eECCCCccCCccC--------------------------------------------hhhh--hccccCCEEECcCCCCC
Confidence 111111100000 0001 11789999999999999
Q ss_pred CCCCccccCccCCCeeeccCCcCCc-cchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCC-C
Q 037792 368 GDIPSEIGDLQNIHGLNLSHNFLSG-SIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD-K 445 (558)
Q Consensus 368 ~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~-~ 445 (558)
+..|..+..+++|++|++++|.+++ .+|..|+.+++|++|++++|.+++..|..+..+++|++|++++|++++.+|. .
T Consensus 438 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 517 (606)
T 3vq2_A 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY 517 (606)
T ss_dssp ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGT
T ss_pred ccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHc
Confidence 8899999999999999999999997 4788999999999999999999999999999999999999999999988776 5
Q ss_pred cccCCCCcccccCCCCCC
Q 037792 446 EQFSTFDESSYRGNLFLC 463 (558)
Q Consensus 446 ~~~~~l~~~~~~~N~~~C 463 (558)
..++.++.+++++|....
T Consensus 518 ~~l~~L~~L~l~~N~l~~ 535 (606)
T 3vq2_A 518 NQLYSLSTLDCSFNRIET 535 (606)
T ss_dssp TTCTTCCEEECTTSCCCC
T ss_pred cCCCcCCEEECCCCcCcc
Confidence 667889999999998763
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=370.54 Aligned_cols=363 Identities=19% Similarity=0.251 Sum_probs=297.1
Q ss_pred CChhhhhcCCCccEEEccCCcCCC-----------------CCchhhh--CCCCCCEEEcccccCCccchHHHHhcCCCC
Q 037792 24 LPQNMGIVLPKLVYMNISKNSFEG-----------------NIPSSIG--KMQGLRLLDVSSNNFAGELSQSLVINCFSL 84 (558)
Q Consensus 24 ~p~~~~~~l~~L~~L~Ls~n~i~~-----------------~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 84 (558)
+|..+.. +++|++|+|++|.+++ .+|..++ ++++|++|++++|.+.+.+|..+ .++++|
T Consensus 440 IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L 517 (876)
T 4ecn_A 440 ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPEL 517 (876)
T ss_dssp ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGCSSC
T ss_pred hhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH-hCCCCC
Confidence 7776665 8999999999999997 3788877 99999999999999988888665 789999
Q ss_pred CEEEccCCc-cCc-cCchhhcCCC-------ccCeeeccccccccccch--hhcCCCCCCEEEccCCcCCCCCcccccCC
Q 037792 85 EWLDLSNNN-FVG-QIFPNYMNLT-------RLWALYLYNNNFSGKIKD--GLLRSTELMVLDISNNRLSGHIPSWMGNF 153 (558)
Q Consensus 85 ~~L~l~~n~-i~~-~~~~~~~~l~-------~L~~L~l~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 153 (558)
++|++++|+ +++ .+|..+.+++ +|++|++++|.++ .+|. .+.++++|+.|++++|.++ .+| .++.+
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L 594 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTN 594 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTT
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCC
Confidence 999999998 877 6777666555 9999999999998 6777 8999999999999999999 777 78999
Q ss_pred CCCcEEEcccCcCcccchhhhcCCcc-cceeeccccccccccCCCcCC--CCccEEEccCCcCcccchhh---hh--CCC
Q 037792 154 STLQILSMSKNLLEGNIPVQFNNLAS-LQILNISENNLSGSMISTLNL--SSVEHLYLQNNALGGSIPNT---FF--RGS 225 (558)
Q Consensus 154 ~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~i~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~---~~--~~~ 225 (558)
++|+.|++++|.+. .+|..+..+++ |+.|++++|.+...+..+... ++|+.|++++|.+.+.+|.. +. .++
T Consensus 595 ~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~ 673 (876)
T 4ecn_A 595 VKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673 (876)
T ss_dssp SEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred CcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence 99999999999998 78888999998 999999999998665443333 45999999999998765532 22 345
Q ss_pred CCcEEEcCCC-----------CCCCcCEEEccCCcCCCCchhh-ccC-------CCCCCEEEcccCcCccccChhhh--c
Q 037792 226 ALETLDLRIN-----------EHSNLRTLLLRGNYLQGPIPHQ-LCH-------LRKLGIMDISHNRLNGSIPACIT--N 284 (558)
Q Consensus 226 ~L~~L~l~~n-----------~~~~L~~L~l~~n~l~~~~~~~-~~~-------l~~L~~L~l~~n~l~~~~p~~~~--~ 284 (558)
+|+.|++++| .+++|+.|++++|.++ .+|.. +.. +++|+.|++++|+++ .+|..+. .
T Consensus 674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~ 751 (876)
T 4ecn_A 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATT 751 (876)
T ss_dssp CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTT
T ss_pred CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhcc
Confidence 8999999998 4578999999999998 44444 332 239999999999998 6666553 2
Q ss_pred ccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCC
Q 037792 285 MLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNN 364 (558)
Q Consensus 285 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n 364 (558)
+++|+.|++++|
T Consensus 752 --------------------------------------------------------------------l~~L~~L~Ls~N 763 (876)
T 4ecn_A 752 --------------------------------------------------------------------LPYLSNMDVSYN 763 (876)
T ss_dssp --------------------------------------------------------------------CTTCCEEECCSS
T ss_pred --------------------------------------------------------------------CCCcCEEEeCCC
Confidence 789999999999
Q ss_pred CCCCCCCccccCccCCCeeeccC------CcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCC
Q 037792 365 ELTGDIPSEIGDLQNIHGLNLSH------NFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNL 438 (558)
Q Consensus 365 ~l~~~~~~~~~~l~~L~~L~Ls~------N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l 438 (558)
.+++ +|..+..+++|+.|+|++ |.+.+.+|..|..+++|+.|+|++|.+ +.+|..+. ++|+.|++++|++
T Consensus 764 ~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 764 CFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp CCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTT
T ss_pred CCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCC
Confidence 9996 788899999999999976 888889999999999999999999999 57777765 6999999999999
Q ss_pred cCCCCC-CcccCCCCcccccCCCCCC--CCC
Q 037792 439 SGPIPD-KEQFSTFDESSYRGNLFLC--GPA 466 (558)
Q Consensus 439 ~~~~p~-~~~~~~l~~~~~~~N~~~C--~~~ 466 (558)
....+. ...........+.+|+..+ +|+
T Consensus 840 ~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~ 870 (876)
T 4ecn_A 840 ISIDVTSVCPYIEAGMYVLLYDKTQDIRGCD 870 (876)
T ss_dssp CEEECGGGHHHHHTTCCEEECCTTSEEESCG
T ss_pred CccChHHccccccchheeecCCCccccCCCC
Confidence 864443 1112233445566666655 664
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-41 Score=358.89 Aligned_cols=390 Identities=19% Similarity=0.199 Sum_probs=300.9
Q ss_pred CCCcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCC
Q 037792 3 LTSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCF 82 (558)
Q Consensus 3 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 82 (558)
.+..+++|++|++++|.++ .++...+..+++|++|++++|.+++..|.+|.++++|++|++++|.++ .++...+.+++
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~ 124 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLK 124 (570)
T ss_dssp TTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCSCTTCT
T ss_pred HhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccc-cCCCccccccc
Confidence 3678999999999999998 677666667999999999999999888889999999999999999998 56654468899
Q ss_pred CCCEEEccCCccCc-cCchhhcCCCccCeeeccccccccccchhhcCCCCC----CEEEccCCcCCCC------------
Q 037792 83 SLEWLDLSNNNFVG-QIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTEL----MVLDISNNRLSGH------------ 145 (558)
Q Consensus 83 ~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L----~~L~L~~n~l~~~------------ 145 (558)
+|++|++++|.+.+ ..|..+.++++|++|++++|.+++..+..+..+++| +.+++++|.+.+.
T Consensus 125 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~ 204 (570)
T 2z63_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 204 (570)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred cccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCccee
Confidence 99999999999886 358889999999999999999887766666666666 6677766655432
Q ss_pred ---------------------------------------------------------------------CcccccCCCCC
Q 037792 146 ---------------------------------------------------------------------IPSWMGNFSTL 156 (558)
Q Consensus 146 ---------------------------------------------------------------------~~~~~~~l~~L 156 (558)
.|..+..+++|
T Consensus 205 L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L 284 (570)
T 2z63_A 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284 (570)
T ss_dssp EEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTC
T ss_pred EecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcc
Confidence 23344556788
Q ss_pred cEEEcccCcCcccchhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCC-
Q 037792 157 QILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRIN- 235 (558)
Q Consensus 157 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n- 235 (558)
+.|++++|.+. .+|..+..+ +|+.|++++|.+...+. ..+++|++|++++|.+.+..+. ..+++|+.|++++|
T Consensus 285 ~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~ 358 (570)
T 2z63_A 285 SSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNG 358 (570)
T ss_dssp SEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSC
T ss_pred cEEEecCccch-hhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCc
Confidence 89999998887 567777777 89999999998875544 2567777888877777654443 56677777777776
Q ss_pred ------------CCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccC-hhhhcccc---cccccCcccccc
Q 037792 236 ------------EHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIP-ACITNMLF---SRVENGYLYGFD 299 (558)
Q Consensus 236 ------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~---~~~~~~~~~~~~ 299 (558)
.+++|++|++++|.+.+..+. +..+++|+.|++++|++.+..| ..+.+++. ..+..+.+.+..
T Consensus 359 l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 437 (570)
T 2z63_A 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437 (570)
T ss_dssp CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECC
T ss_pred cCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccc
Confidence 246777777777777754443 7777777777777777765544 23333221 111111000000
Q ss_pred chhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCC-CCCCccccCcc
Q 037792 300 IVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELT-GDIPSEIGDLQ 378 (558)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~ 378 (558)
. ..+ ..+++|++|++++|.+. +.+|..+..++
T Consensus 438 ~---------------------------------------------~~~--~~l~~L~~L~l~~n~l~~~~~p~~~~~l~ 470 (570)
T 2z63_A 438 N---------------------------------------------GIF--NGLSSLEVLKMAGNSFQENFLPDIFTELR 470 (570)
T ss_dssp T---------------------------------------------TTT--TTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred h---------------------------------------------hhh--hcCCcCcEEECcCCcCccccchhhhhccc
Confidence 0 000 01789999999999997 56888999999
Q ss_pred CCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCCCccc
Q 037792 379 NIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQF 448 (558)
Q Consensus 379 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~ 448 (558)
+|++|++++|++++..|..|..+++|++|++++|++++.+|..+..+++|+.|++++|+++|.+|..+.+
T Consensus 471 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 540 (570)
T 2z63_A 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540 (570)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence 9999999999999888999999999999999999999988889999999999999999999999985544
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-40 Score=350.01 Aligned_cols=378 Identities=21% Similarity=0.251 Sum_probs=245.9
Q ss_pred CCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCE
Q 037792 7 QHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEW 86 (558)
Q Consensus 7 ~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 86 (558)
+...+++|+++|.++ .+|..++ ++|++|++++|.+++..+.+|.++++|++|++++|.++ .+++..+.++++|++
T Consensus 30 ~~~~~~l~ls~~~L~-~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 30 NELESMVDYSNRNLT-HVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEY 104 (562)
T ss_dssp ---CCEEECTTSCCC-SCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTTCCE
T ss_pred cCCCcEEEcCCCCCc-cCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC-cCCHHHhCCCCCCCE
Confidence 334467777777777 6776553 57777777777777666667777777777777777777 444444466777777
Q ss_pred EEccCCccCccCchhhcCCCccCeeeccccccccc-cchhhcCCCCCCEEEccCCcCCCCCcccccCCCCC--cEEEccc
Q 037792 87 LDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGK-IKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTL--QILSMSK 163 (558)
Q Consensus 87 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~L~~ 163 (558)
|++++|+++. +|.. .+++|++|++++|.+++. .|..+.++++|++|++++|.++.. .+.++++| +.|++++
T Consensus 105 L~Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 105 LDVSHNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDL 178 (562)
T ss_dssp EECTTSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEE
T ss_pred EECCCCcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeec
Confidence 7777777763 3333 677777777777777653 346677777777777777776642 23344444 7777777
Q ss_pred CcC--cccchhhhcC--------------------------Ccccceeeccccc--------------------------
Q 037792 164 NLL--EGNIPVQFNN--------------------------LASLQILNISENN-------------------------- 189 (558)
Q Consensus 164 n~l--~~~~~~~~~~--------------------------l~~L~~L~L~~n~-------------------------- 189 (558)
|.+ .+..|..+.. +++|+.+++++|.
T Consensus 179 n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~ 258 (562)
T 3a79_B 179 VSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH 258 (562)
T ss_dssp SSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEE
T ss_pred ccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecC
Confidence 766 4343333332 3344444444432
Q ss_pred --ccccc----CCCcCCCCccEEEccCCcCcccchhhh-----hCCC--------------------------CCcEEEc
Q 037792 190 --LSGSM----ISTLNLSSVEHLYLQNNALGGSIPNTF-----FRGS--------------------------ALETLDL 232 (558)
Q Consensus 190 --i~~~~----~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~~~--------------------------~L~~L~l 232 (558)
+.+.. ......++|++|++++|.+++.+|..+ ..++ +|+.|++
T Consensus 259 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l 338 (562)
T 3a79_B 259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI 338 (562)
T ss_dssp EEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEE
T ss_pred CcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEc
Confidence 11100 000123477777777777776666554 3333 3444444
Q ss_pred CCC---------CCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccc--cChhhhcccccccccCccccccch
Q 037792 233 RIN---------EHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGS--IPACITNMLFSRVENGYLYGFDIV 301 (558)
Q Consensus 233 ~~n---------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~p~~~~~l~~~~~~~~~~~~~~~~ 301 (558)
++| .+++|++|++++|.+++..|..+..+++|++|++++|++++. +|..+.+
T Consensus 339 ~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~----------------- 401 (562)
T 3a79_B 339 SDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN----------------- 401 (562)
T ss_dssp ESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTT-----------------
T ss_pred cCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcC-----------------
Confidence 443 234555566666655555555555556666666666555421 1111111
Q ss_pred hhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCC-ccccCccCC
Q 037792 302 LRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIP-SEIGDLQNI 380 (558)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L 380 (558)
+++|+.|++++|.+++.+| ..+..+++|
T Consensus 402 ---------------------------------------------------l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 402 ---------------------------------------------------MSSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp ---------------------------------------------------CTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred ---------------------------------------------------CCCCCEEECCCCcCCCccChhhhcCcccC
Confidence 7889999999999997455 458889999
Q ss_pred CeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCC-CcccCCCCcccccCC
Q 037792 381 HGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD-KEQFSTFDESSYRGN 459 (558)
Q Consensus 381 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~~~l~~~~~~~N 459 (558)
++|++++|++++..|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++...+. ...++.++.+++++|
T Consensus 431 ~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 431 LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp CEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSC
T ss_pred CEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCC
Confidence 9999999999877776554 79999999999999 5666666999999999999999954444 566788899999999
Q ss_pred CCCCCCC
Q 037792 460 LFLCGPA 466 (558)
Q Consensus 460 ~~~C~~~ 466 (558)
|+.|+|+
T Consensus 508 ~~~c~c~ 514 (562)
T 3a79_B 508 PWDCTCP 514 (562)
T ss_dssp CBCCCHH
T ss_pred CcCCCcc
Confidence 9999985
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-39 Score=333.87 Aligned_cols=359 Identities=20% Similarity=0.263 Sum_probs=297.1
Q ss_pred ccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccC-chhhcCCCccCeeec
Q 037792 35 LVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQI-FPNYMNLTRLWALYL 113 (558)
Q Consensus 35 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l 113 (558)
-+.++.+++.++ .+|. + .++|++|++++|.++ .+++..+.++++|++|++++|.+.+.+ +..|.++++|++|++
T Consensus 12 ~~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 12 GYNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp TTEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCC-EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred ccccCcCCCCcc-cCCC-C--CCccCEEEecCCccC-cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence 456788888887 4565 2 378999999999999 454444589999999999999987444 567999999999999
Q ss_pred cccccccccchhhcCCCCCCEEEccCCcCCCCCccc--ccCCCCCcEEEcccCcCcccchhh-hcCCcccceeecccccc
Q 037792 114 YNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSW--MGNFSTLQILSMSKNLLEGNIPVQ-FNNLASLQILNISENNL 190 (558)
Q Consensus 114 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~i 190 (558)
++|.+++..+..+.++++|++|++++|.+++..+.. +..+++|++|++++|.+.+..|.. +..+++|++|++++|.+
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 999999888999999999999999999998755544 889999999999999999777766 88999999999999999
Q ss_pred ccccCCCc---CCCCccEEEccCCcCcccchhh--------hhCCCCCcEEEcCCCCC--------------CCcCEEEc
Q 037792 191 SGSMISTL---NLSSVEHLYLQNNALGGSIPNT--------FFRGSALETLDLRINEH--------------SNLRTLLL 245 (558)
Q Consensus 191 ~~~~~~~~---~~~~L~~L~l~~n~l~~~~~~~--------~~~~~~L~~L~l~~n~~--------------~~L~~L~l 245 (558)
.+..+..+ ...+++.|++++|.+.+..+.. +..+++|+.|++++|.+ ++++.|++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 98776655 3378999999999998654433 23456788888887743 67777777
Q ss_pred cCCcCCCCc----------hhhcc--CCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCc
Q 037792 246 RGNYLQGPI----------PHQLC--HLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSN 313 (558)
Q Consensus 246 ~~n~l~~~~----------~~~~~--~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (558)
++|...+.. +..+. ..++|+.|++++|++++..|..+..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~----------------------------- 297 (455)
T 3v47_A 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH----------------------------- 297 (455)
T ss_dssp TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT-----------------------------
T ss_pred ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhccc-----------------------------
Confidence 777544221 11111 2357778888887777655555543
Q ss_pred ccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCcc
Q 037792 314 YYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGS 393 (558)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 393 (558)
+++|+.|++++|.+.+..|..|..+++|++|++++|.+++.
T Consensus 298 ---------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 338 (455)
T 3v47_A 298 ---------------------------------------FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI 338 (455)
T ss_dssp ---------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred ---------------------------------------CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCc
Confidence 78899999999999988899999999999999999999988
Q ss_pred chhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCC-CcccCCCCcccccCCCCCCCCC
Q 037792 394 IPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD-KEQFSTFDESSYRGNLFLCGPA 466 (558)
Q Consensus 394 ~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~~~l~~~~~~~N~~~C~~~ 466 (558)
.|..|+++++|++|++++|++++..|..+..+++|++|++++|++++..+. ...++.++.+++++||+.|+|+
T Consensus 339 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 339 DSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 899999999999999999999999999999999999999999999976554 3677899999999999999997
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-39 Score=340.03 Aligned_cols=381 Identities=19% Similarity=0.198 Sum_probs=286.6
Q ss_pred CCcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCc-cchHHHHhcCC
Q 037792 4 TSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAG-ELSQSLVINCF 82 (558)
Q Consensus 4 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~l~ 82 (558)
+.++++|++|++++|.++ .++...+..+++|++|++++|.++ .+|.. .+++|++|++++|.+++ .+|.. +.+++
T Consensus 41 ~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~-~~~l~ 115 (520)
T 2z7x_B 41 ILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKE-FGNMS 115 (520)
T ss_dssp HTTCTTCCEEECCSSCCC-EEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGG-GGGCT
T ss_pred ccccccccEEecCCCccC-CcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhh-hccCC
Confidence 468899999999999999 554444456999999999999999 45655 89999999999999985 35555 48899
Q ss_pred CCCEEEccCCccCccCchhhcCCCcc--Ceeecccccc--ccccchhhcC--------------------------CCCC
Q 037792 83 SLEWLDLSNNNFVGQIFPNYMNLTRL--WALYLYNNNF--SGKIKDGLLR--------------------------STEL 132 (558)
Q Consensus 83 ~L~~L~l~~n~i~~~~~~~~~~l~~L--~~L~l~~n~i--~~~~~~~~~~--------------------------l~~L 132 (558)
+|++|++++|.+.+ ..+..+++| ++|++++|.+ .+..|..+.. +++|
T Consensus 116 ~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L 192 (520)
T 2z7x_B 116 QLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANL 192 (520)
T ss_dssp TCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEE
T ss_pred cceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccce
Confidence 99999999999975 457777888 9999999998 5555555544 5677
Q ss_pred CEEEccCCc-------CCCCCcccccCCCCCcEEEcccCcCcccchhhhc---CCcccceeecccccccc-ccCCC----
Q 037792 133 MVLDISNNR-------LSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFN---NLASLQILNISENNLSG-SMIST---- 197 (558)
Q Consensus 133 ~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~L~~n~i~~-~~~~~---- 197 (558)
+.+++++|. +.+..| .+..+++|+.|++++|.+.+..+..+. ..++|++|++++|.+.+ .+...
T Consensus 193 ~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 271 (520)
T 2z7x_B 193 ELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYS 271 (520)
T ss_dssp EECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCC
T ss_pred eeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcc
Confidence 777777775 443444 577888999999998887654332221 24589999999998884 44444
Q ss_pred -cCCCCccEEEccCCcCcccch-hhhhCC---CCCcEEEcCCC---------CCCCcCEEEccCCcCCCCchhhccCCCC
Q 037792 198 -LNLSSVEHLYLQNNALGGSIP-NTFFRG---SALETLDLRIN---------EHSNLRTLLLRGNYLQGPIPHQLCHLRK 263 (558)
Q Consensus 198 -~~~~~L~~L~l~~n~l~~~~~-~~~~~~---~~L~~L~l~~n---------~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 263 (558)
..+++|+.+++++|.+ .+| ..+... .+|+.|++++| .+++|++|++++|.+++..|..+..+++
T Consensus 272 ~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 349 (520)
T 2z7x_B 272 GTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTE 349 (520)
T ss_dssp SCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSS
T ss_pred cccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCC
Confidence 4678888888888887 344 344333 67888888776 3567888888888888878888888888
Q ss_pred CCEEEcccCcCcc--ccChhhhccccc---ccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeee
Q 037792 264 LGIMDISHNRLNG--SIPACITNMLFS---RVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVN 338 (558)
Q Consensus 264 L~~L~l~~n~l~~--~~p~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (558)
|++|++++|++++ .+|..+..++.. .+..+.+.+. +..
T Consensus 350 L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~---------------l~~---------------------- 392 (520)
T 2z7x_B 350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD---------------EKK---------------------- 392 (520)
T ss_dssp CCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC---------------GGG----------------------
T ss_pred CCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc---------------ccc----------------------
Confidence 8888888888875 445555543321 1111111110 000
Q ss_pred eecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccC
Q 037792 339 FMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418 (558)
Q Consensus 339 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~ 418 (558)
..+ ..+++|+.|++++|.+++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++...
T Consensus 393 -------~~~--~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~ 460 (520)
T 2z7x_B 393 -------GDC--SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVP 460 (520)
T ss_dssp -------CSC--CCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCC
T ss_pred -------chh--ccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccC
Confidence 000 0168899999999999877766554 79999999999999 67777779999999999999999655
Q ss_pred chhcccCCCCCEEecCCCCCcCCCCC
Q 037792 419 PPQLTELHSLSTFDVSYNNLSGPIPD 444 (558)
Q Consensus 419 ~~~l~~l~~L~~L~l~~N~l~~~~p~ 444 (558)
+..+..+++|++|++++|+++|.++.
T Consensus 461 ~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 461 DGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred HHHhccCCcccEEECcCCCCcccCCc
Confidence 44589999999999999999998775
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-39 Score=344.63 Aligned_cols=385 Identities=21% Similarity=0.210 Sum_probs=287.4
Q ss_pred CCcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCcc-chHHHHhcCC
Q 037792 4 TSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGE-LSQSLVINCF 82 (558)
Q Consensus 4 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~l~ 82 (558)
+.++++|++|++++|.++ .++...+..+++|++|++++|.+++..+..|+++++|++|++++|.+++. .|. .+.+++
T Consensus 46 ~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~ 123 (549)
T 2z81_A 46 LRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLT 123 (549)
T ss_dssp TSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCT
T ss_pred hhcCCcccEEECCCCCcC-ccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccC
Confidence 678899999999999998 55555555699999999999999988888899999999999999999842 333 357899
Q ss_pred CCCEEEccCCccCccC-chhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEc
Q 037792 83 SLEWLDLSNNNFVGQI-FPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSM 161 (558)
Q Consensus 83 ~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 161 (558)
+|++|++++|...+.+ +..+.++++|++|++++|.+++..+..+..+++|++|++++|.+....+..+..+++|+.|++
T Consensus 124 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 203 (549)
T 2z81_A 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL 203 (549)
T ss_dssp TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEE
T ss_pred CccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEc
Confidence 9999999999844334 457899999999999999998878888877777777777777665322222344666666666
Q ss_pred ccCcCccc---------------------------ch----hhhcCCcccceeeccccccccccCCC-------------
Q 037792 162 SKNLLEGN---------------------------IP----VQFNNLASLQILNISENNLSGSMIST------------- 197 (558)
Q Consensus 162 ~~n~l~~~---------------------------~~----~~~~~l~~L~~L~L~~n~i~~~~~~~------------- 197 (558)
++|.+.+. .+ ..+..+++|+.+++++|.+.+.....
T Consensus 204 ~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L 283 (549)
T 2z81_A 204 RDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV 283 (549)
T ss_dssp ESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTC
T ss_pred cCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccc
Confidence 66666532 11 11233445555555555543321000
Q ss_pred ----------------------c-CCCCccEEEccCCcCcccchhhh-hCCCCCcEEEcCCCC--------------CCC
Q 037792 198 ----------------------L-NLSSVEHLYLQNNALGGSIPNTF-FRGSALETLDLRINE--------------HSN 239 (558)
Q Consensus 198 ----------------------~-~~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~--------------~~~ 239 (558)
. ..++|+.|++++|.+. .+|..+ ..+++|+.|++++|. +++
T Consensus 284 ~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~ 362 (549)
T 2z81_A 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362 (549)
T ss_dssp CEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTT
T ss_pred ccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhcccc
Confidence 0 1357999999999987 556555 579999999999883 468
Q ss_pred cCEEEccCCcCCCCch--hhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccch
Q 037792 240 LRTLLLRGNYLQGPIP--HQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNS 317 (558)
Q Consensus 240 L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (558)
|++|++++|.+++..+ ..+..+++|++|++++|+++ .+|..+..++...
T Consensus 363 L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~---------------------------- 413 (549)
T 2z81_A 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMR---------------------------- 413 (549)
T ss_dssp CCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCC----------------------------
T ss_pred CcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccccccc----------------------------
Confidence 9999999999986543 56899999999999999998 5666544322110
Q ss_pred hhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhh
Q 037792 318 TVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPES 397 (558)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 397 (558)
...+..+.+..+++...++|++|++++|++++.. ..+++|++|++++|+++ .+|.
T Consensus 414 -------------------~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~- 468 (549)
T 2z81_A 414 -------------------FLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD- 468 (549)
T ss_dssp -------------------EEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-
T ss_pred -------------------EEECCCCCcccccchhcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-
Confidence 1112222233333333578999999999998643 57899999999999999 5665
Q ss_pred hhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCCC
Q 037792 398 FSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDK 445 (558)
Q Consensus 398 ~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~ 445 (558)
...+++|++|++++|++++.+|..+..+++|+.|++++|+++|.+|..
T Consensus 469 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 516 (549)
T 2z81_A 469 ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 516 (549)
T ss_dssp GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHH
T ss_pred cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccH
Confidence 467999999999999999999999999999999999999999988853
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=331.84 Aligned_cols=346 Identities=17% Similarity=0.166 Sum_probs=247.5
Q ss_pred ccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEc
Q 037792 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDL 89 (558)
Q Consensus 10 L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 89 (558)
-+.++.+++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.++ .+++..+.++++|++|++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L 87 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGL 87 (477)
T ss_dssp TTEEECCSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEEC
Confidence 367899999998 8998764 58999999999999888889999999999999999998 454445588999999999
Q ss_pred cCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCccc
Q 037792 90 SNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGN 169 (558)
Q Consensus 90 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (558)
++|.+....+..|.++++|++|++++|.+....+..+.++++|++|++++|.+.+..+..|.++++|+.|++++|.+.+.
T Consensus 88 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 167 (477)
T 2id5_A 88 RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167 (477)
T ss_dssp CSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred CCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence 99999876666788999999999999999888888899999999999999999888888899999999999999999877
Q ss_pred chhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCC
Q 037792 170 IPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGN 248 (558)
Q Consensus 170 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n 248 (558)
.+..+..+++|+.|++++|.+.+.....+ .+++|++|++++|...+.++..... ..+|++|++++|
T Consensus 168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-------------~~~L~~L~l~~n 234 (477)
T 2id5_A 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY-------------GLNLTSLSITHC 234 (477)
T ss_dssp CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT-------------TCCCSEEEEESS
T ss_pred ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc-------------CccccEEECcCC
Confidence 77788888999999999988887766555 6777888888777665444433222 124455555555
Q ss_pred cCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCc
Q 037792 249 YLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDG 328 (558)
Q Consensus 249 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (558)
.+++..+..+..+++|+.|++++|+++
T Consensus 235 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~----------------------------------------------------- 261 (477)
T 2id5_A 235 NLTAVPYLAVRHLVYLRFLNLSYNPIS----------------------------------------------------- 261 (477)
T ss_dssp CCCSCCHHHHTTCTTCCEEECCSSCCC-----------------------------------------------------
T ss_pred cccccCHHHhcCccccCeeECCCCcCC-----------------------------------------------------
Confidence 555444445555555555555555554
Q ss_pred cccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEe
Q 037792 329 RMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLD 408 (558)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 408 (558)
+..+..|..+++|++|+|++|++++..|..|.++++|+.|+
T Consensus 262 ---------------------------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 302 (477)
T 2id5_A 262 ---------------------------------------TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLN 302 (477)
T ss_dssp ---------------------------------------EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEE
T ss_pred ---------------------------------------ccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEE
Confidence 33444455555555555555555555555555555555555
Q ss_pred CCCCcccccCchhcccCCCCCEEecCCCCCcCCCCCCcccCCCCcccccCCCCCCCC
Q 037792 409 LSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGP 465 (558)
Q Consensus 409 Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~N~~~C~~ 465 (558)
+++|.++...+..|..+++|+.|++++|++.|.++..+.+.......+.++...|..
T Consensus 303 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~ 359 (477)
T 2id5_A 303 VSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCAT 359 (477)
T ss_dssp CCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEE
T ss_pred CCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCC
Confidence 555555555555555555566666666666555444333333333444555555544
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-38 Score=332.29 Aligned_cols=358 Identities=23% Similarity=0.211 Sum_probs=277.8
Q ss_pred CCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCE
Q 037792 7 QHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEW 86 (558)
Q Consensus 7 ~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 86 (558)
.++|++|++++|.++ .++...+..+++|++|++++|.+++..|.+|.++++|++|++++|.++ .+|.. .+++|++
T Consensus 51 ~~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~ 125 (562)
T 3a79_B 51 PPRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC---PMASLRH 125 (562)
T ss_dssp CTTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC---CCTTCSE
T ss_pred CCCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc---ccccCCE
Confidence 378999999999999 677656666999999999999999888999999999999999999999 78875 7999999
Q ss_pred EEccCCccCcc-CchhhcCCCccCeeeccccccccccchhhcCCCCC--CEEEccCCcC--CCCCcccccC---------
Q 037792 87 LDLSNNNFVGQ-IFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTEL--MVLDISNNRL--SGHIPSWMGN--------- 152 (558)
Q Consensus 87 L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~~~~--------- 152 (558)
|++++|.+.+. .|..|.++++|++|++++|.+... .+..+++| ++|++++|.+ ++..|..+..
T Consensus 126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~ 202 (562)
T 3a79_B 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLV 202 (562)
T ss_dssp EECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEE
T ss_pred EECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEE
Confidence 99999999874 357999999999999999999764 34555555 9999999998 6666655544
Q ss_pred -----------------CCCCcEEEcccCcC----------------------------cc----cchhhhcCCccccee
Q 037792 153 -----------------FSTLQILSMSKNLL----------------------------EG----NIPVQFNNLASLQIL 183 (558)
Q Consensus 153 -----------------l~~L~~L~L~~n~l----------------------------~~----~~~~~~~~l~~L~~L 183 (558)
+++|+.+++++|+. .+ ..+.. ...++|++|
T Consensus 203 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L 281 (562)
T 3a79_B 203 FHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYL 281 (562)
T ss_dssp ECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEE
T ss_pred ecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEE
Confidence 33556666665531 10 00111 112367777
Q ss_pred eccccccccccC-CCc-----C--------------------------CCCccEEEccCCcCcccchhhhhCCCCCcEEE
Q 037792 184 NISENNLSGSMI-STL-----N--------------------------LSSVEHLYLQNNALGGSIPNTFFRGSALETLD 231 (558)
Q Consensus 184 ~L~~n~i~~~~~-~~~-----~--------------------------~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 231 (558)
++++|.+.+..+ ..+ . ..+|++|++++|.+.... ....+++|+.|+
T Consensus 282 ~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ 359 (562)
T 3a79_B 282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLN 359 (562)
T ss_dssp EEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEE
T ss_pred EEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEE
Confidence 888777764322 221 1 134667777776664321 115678889999
Q ss_pred cCCC-----------CCCCcCEEEccCCcCCCC--chhhccCCCCCCEEEcccCcCccccChh-hhcccccccccCcccc
Q 037792 232 LRIN-----------EHSNLRTLLLRGNYLQGP--IPHQLCHLRKLGIMDISHNRLNGSIPAC-ITNMLFSRVENGYLYG 297 (558)
Q Consensus 232 l~~n-----------~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~~~~~~~~~~~ 297 (558)
+++| .+++|++|++++|.+++. .|..+..+++|++|++++|++++.+|.. +..
T Consensus 360 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~------------- 426 (562)
T 3a79_B 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW------------- 426 (562)
T ss_dssp CCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC-------------
T ss_pred CCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcC-------------
Confidence 8887 357899999999999863 4567999999999999999998655543 221
Q ss_pred ccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCc
Q 037792 298 FDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDL 377 (558)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 377 (558)
+++|+.|++++|.+++..|..+.
T Consensus 427 -------------------------------------------------------l~~L~~L~l~~n~l~~~~~~~l~-- 449 (562)
T 3a79_B 427 -------------------------------------------------------AESILVLNLSSNMLTGSVFRCLP-- 449 (562)
T ss_dssp -------------------------------------------------------CTTCCEEECCSSCCCGGGGSSCC--
T ss_pred -------------------------------------------------------cccCCEEECCCCCCCcchhhhhc--
Confidence 68899999999999876665443
Q ss_pred cCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCCCc
Q 037792 378 QNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKE 446 (558)
Q Consensus 378 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~ 446 (558)
++|++|++++|+++ .+|..+..+++|++|++++|+++...+..+..+++|+.|++++|++.|.+|..+
T Consensus 450 ~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~ 517 (562)
T 3a79_B 450 PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIR 517 (562)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHH
T ss_pred CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHH
Confidence 79999999999999 567666799999999999999995544459999999999999999999888643
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-37 Score=333.25 Aligned_cols=396 Identities=20% Similarity=0.196 Sum_probs=292.9
Q ss_pred CCCcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCC
Q 037792 3 LTSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCF 82 (558)
Q Consensus 3 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 82 (558)
.|.++++|++|+|++|.++ .+|+..|..+++|++|+|++|++++..+.+|.++++|++|++++|+++ .++...+.+++
T Consensus 71 ~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~ 148 (635)
T 4g8a_A 71 SFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLK 148 (635)
T ss_dssp TTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCC-CSTTCCCTTCT
T ss_pred HHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCC-CCChhhhhcCc
Confidence 3788999999999999999 888888888999999999999999877788999999999999999999 67777678999
Q ss_pred CCCEEEccCCccCcc-CchhhcCCCccCeeeccccccccccchhhcCCCC----CCEEEccCCcCCCCCcccc-------
Q 037792 83 SLEWLDLSNNNFVGQ-IFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTE----LMVLDISNNRLSGHIPSWM------- 150 (558)
Q Consensus 83 ~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~----L~~L~L~~n~l~~~~~~~~------- 150 (558)
+|++|++++|.+.+. .+..+..+++|++|++++|.+++..+..+..+.+ ...++++.|.+....+..+
T Consensus 149 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~ 228 (635)
T 4g8a_A 149 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 228 (635)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred ccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhh
Confidence 999999999999764 5678899999999999999998776665544332 2345555554432211111
Q ss_pred --------------------------------------------------------------------------cCCCCC
Q 037792 151 --------------------------------------------------------------------------GNFSTL 156 (558)
Q Consensus 151 --------------------------------------------------------------------------~~l~~L 156 (558)
..+.++
T Consensus 229 l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 308 (635)
T 4g8a_A 229 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNV 308 (635)
T ss_dssp EEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTC
T ss_pred hhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccc
Confidence 111222
Q ss_pred cEEEcccCcCcccchhhhcCCcccceeeccccccccccC--------------------CCcCCCCccEEEccCCcCcc-
Q 037792 157 QILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMI--------------------STLNLSSVEHLYLQNNALGG- 215 (558)
Q Consensus 157 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~--------------------~~~~~~~L~~L~l~~n~l~~- 215 (558)
+.+++.++.+... ..+....+++.|++.+|.+..... ....+++|+.|++++|.+..
T Consensus 309 ~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~ 386 (635)
T 4g8a_A 309 SSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 386 (635)
T ss_dssp SEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEE
T ss_pred ccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccc
Confidence 3333333332211 123344556666666665443221 12257889999999998853
Q ss_pred -cchhhhhCCCCCcEEEcCCC----------CCCCcCEEEccCCcCCCCc-hhhccCCCCCCEEEcccCcCccccChhhh
Q 037792 216 -SIPNTFFRGSALETLDLRIN----------EHSNLRTLLLRGNYLQGPI-PHQLCHLRKLGIMDISHNRLNGSIPACIT 283 (558)
Q Consensus 216 -~~~~~~~~~~~L~~L~l~~n----------~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 283 (558)
..+..+....+|+.+++..+ .+++|+.+++..+...... +..+..+++++.++++.|.+.+..+..+.
T Consensus 387 ~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~ 466 (635)
T 4g8a_A 387 GCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 466 (635)
T ss_dssp EECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred cccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccc
Confidence 35667778889999998877 5678999999888765443 35678889999999999998876666554
Q ss_pred cccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccC
Q 037792 284 NMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSN 363 (558)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~ 363 (558)
.++....- .+..... .....-..+ ..+++|++|++++
T Consensus 467 ~~~~L~~L-------------~Ls~N~~----------------------------~~~~~~~~~--~~l~~L~~L~Ls~ 503 (635)
T 4g8a_A 467 GLSSLEVL-------------KMAGNSF----------------------------QENFLPDIF--TELRNLTFLDLSQ 503 (635)
T ss_dssp TCTTCCEE-------------ECTTCEE----------------------------GGGEECSCC--TTCTTCCEEECTT
T ss_pred cchhhhhh-------------hhhhccc----------------------------ccccCchhh--hhccccCEEECCC
Confidence 43211110 0000000 000000001 1178999999999
Q ss_pred CCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccC-CCCCEEecCCCCCcCCC
Q 037792 364 NELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTEL-HSLSTFDVSYNNLSGPI 442 (558)
Q Consensus 364 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l-~~L~~L~l~~N~l~~~~ 442 (558)
|++++..|..|.++++|++|+|++|++++..|..|+++++|++|+|++|+|++..|..+..+ ++|++|++++|+++|.|
T Consensus 504 N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 504 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred CccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999988 68999999999999988
Q ss_pred CCC
Q 037792 443 PDK 445 (558)
Q Consensus 443 p~~ 445 (558)
...
T Consensus 584 ~~~ 586 (635)
T 4g8a_A 584 EHQ 586 (635)
T ss_dssp GGH
T ss_pred CcH
Confidence 753
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-36 Score=310.75 Aligned_cols=248 Identities=25% Similarity=0.283 Sum_probs=186.4
Q ss_pred cCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCC
Q 037792 6 AQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLE 85 (558)
Q Consensus 6 ~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 85 (558)
.+++++.|+++++.+. .+|. + ..+++|++|++++|.+++..+ +.++++|++|++++|.++ .++. +.++++|+
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~~-~-~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~ 115 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SIDG-V-EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP--LANLTNLT 115 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCTT-G-GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCC
T ss_pred HhccccEEecCCCCCc-cCcc-h-hhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh--hcCCCCCC
Confidence 3678999999999998 7875 3 348999999999999986544 899999999999999998 4554 68899999
Q ss_pred EEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCc
Q 037792 86 WLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNL 165 (558)
Q Consensus 86 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 165 (558)
+|++++|.+.+.. .+.++++|++|++++|.+.+. ..+..+++|++|+++ |.+.+.. .+.++++|+.|++++|.
T Consensus 116 ~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 116 GLTLFNNQITDID--PLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNK 188 (466)
T ss_dssp EEECCSSCCCCCG--GGTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCCh--HHcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCc
Confidence 9999999998643 389999999999999998753 358889999999997 4455332 38899999999999999
Q ss_pred CcccchhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCC---------C
Q 037792 166 LEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRIN---------E 236 (558)
Q Consensus 166 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n---------~ 236 (558)
+.+. ..+..+++|+.|++++|.+.+..+ ...+++|++|++++|.+++. ..+..+++|+.|++++| .
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~ 263 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPLSG 263 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGTT
T ss_pred CCCC--hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchhhhc
Confidence 8844 347889999999999999887655 33688999999999998753 34566666666665555 2
Q ss_pred CCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCc
Q 037792 237 HSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLN 275 (558)
Q Consensus 237 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 275 (558)
+++|++|++++|.+++..+ +..+++|+.|++++|+++
T Consensus 264 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~ 300 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 300 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCS
T ss_pred CCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCccc
Confidence 3344444444444443222 444444444444444443
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-37 Score=319.60 Aligned_cols=322 Identities=20% Similarity=0.176 Sum_probs=261.2
Q ss_pred CEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccC
Q 037792 60 RLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISN 139 (558)
Q Consensus 60 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~ 139 (558)
+.++.+++.++ .+|..+ .++++.|++++|.+.+..+..|.++++|++|++++|.+++..+..|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 46667666666 666543 35677788888777776667778888888888888888777777788888888888888
Q ss_pred CcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCcCcccch
Q 037792 140 NRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIP 218 (558)
Q Consensus 140 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~ 218 (558)
|.++...+..|.++++|++|++++|.+.+..+..|..+++|+.|++++|.+....+..+ .+++|++|++++|.+++..+
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 88886666677888888888888888887777788888888888888888887766555 78889999999988887666
Q ss_pred hhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccc
Q 037792 219 NTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGF 298 (558)
Q Consensus 219 ~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~ 298 (558)
..+..+ ++|+.|++++|.+.+..+..+..+++|+.|++++|+..+.+|.....
T Consensus 170 ~~l~~l-------------~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-------------- 222 (477)
T 2id5_A 170 EALSHL-------------HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY-------------- 222 (477)
T ss_dssp HHHTTC-------------TTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT--------------
T ss_pred hHhccc-------------CCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc--------------
Confidence 667654 55566666677777777778899999999999998876555543322
Q ss_pred cchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCcc
Q 037792 299 DIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQ 378 (558)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 378 (558)
..+|+.|++++|.+++..+..+..++
T Consensus 223 ------------------------------------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~ 248 (477)
T 2id5_A 223 ------------------------------------------------------GLNLTSLSITHCNLTAVPYLAVRHLV 248 (477)
T ss_dssp ------------------------------------------------------TCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred ------------------------------------------------------CccccEEECcCCcccccCHHHhcCcc
Confidence 45799999999999965557889999
Q ss_pred CCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCC-CcccCCCCccccc
Q 037792 379 NIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD-KEQFSTFDESSYR 457 (558)
Q Consensus 379 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~~~l~~~~~~ 457 (558)
+|++|+|++|.+++..+..|.++++|+.|+|++|.+++..|..|..+++|+.|++++|++++..+. ...++.++.++++
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328 (477)
T ss_dssp TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEcc
Confidence 999999999999988888899999999999999999999999999999999999999999976554 3556789999999
Q ss_pred CCCCCCCCC
Q 037792 458 GNLFLCGPA 466 (558)
Q Consensus 458 ~N~~~C~~~ 466 (558)
+||+.|+|.
T Consensus 329 ~N~l~c~c~ 337 (477)
T 2id5_A 329 SNPLACDCR 337 (477)
T ss_dssp SSCEECSGG
T ss_pred CCCccCccc
Confidence 999999985
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-36 Score=303.72 Aligned_cols=335 Identities=21% Similarity=0.198 Sum_probs=225.0
Q ss_pred CCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCee
Q 037792 32 LPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWAL 111 (558)
Q Consensus 32 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 111 (558)
++++++|++++|.++...+..+.++++|++|++++|.++ .++...+..+++|++|++++|.+.+..+..+.++++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 466777777777766544445666777777777777766 4444444666777777777777666556666677777777
Q ss_pred eccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccc
Q 037792 112 YLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLS 191 (558)
Q Consensus 112 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 191 (558)
++++|.++...+..+.++++|++|++++|.+.+..+..+.++++|+.|++++|.+.+. .+..+++|+.|++++|.+.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence 7777776654444456667777777777777666666666677777777777766643 2445566677777766665
Q ss_pred cccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEccc
Q 037792 192 GSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISH 271 (558)
Q Consensus 192 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 271 (558)
... ..++|++|++++|.+... +.. ..++|+.|++++|.+++. ..+..+++|++|++++
T Consensus 200 ~~~----~~~~L~~L~l~~n~l~~~-~~~---------------~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~ 257 (390)
T 3o6n_A 200 TLA----IPIAVEELDASHNSINVV-RGP---------------VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSY 257 (390)
T ss_dssp EEE----CCSSCSEEECCSSCCCEE-ECC---------------CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCS
T ss_pred ccC----CCCcceEEECCCCeeeec-ccc---------------ccccccEEECCCCCCccc--HHHcCCCCccEEECCC
Confidence 432 234566777776666532 211 135677777777777753 4677888888888888
Q ss_pred CcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccch
Q 037792 272 NRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGD 351 (558)
Q Consensus 272 n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (558)
|++++..|..+..
T Consensus 258 n~l~~~~~~~~~~------------------------------------------------------------------- 270 (390)
T 3o6n_A 258 NELEKIMYHPFVK------------------------------------------------------------------- 270 (390)
T ss_dssp SCCCEEESGGGTT-------------------------------------------------------------------
T ss_pred CcCCCcChhHccc-------------------------------------------------------------------
Confidence 8887665655544
Q ss_pred hhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEE
Q 037792 352 ILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTF 431 (558)
Q Consensus 352 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L 431 (558)
+++|+.|++++|.+++ ++..+..+++|++|++++|+++ .+|..+..+++|+.|++++|.++... +..+++|+.|
T Consensus 271 -l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L 344 (390)
T 3o6n_A 271 -MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNL 344 (390)
T ss_dssp -CSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEE
T ss_pred -cccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---chhhccCCEE
Confidence 6778888888888874 4555667888888888888887 45666778888888888888887542 5667788888
Q ss_pred ecCCCCCcCCCCCCcccCCCCcccccCCCCCCCCC
Q 037792 432 DVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGPA 466 (558)
Q Consensus 432 ~l~~N~l~~~~p~~~~~~~l~~~~~~~N~~~C~~~ 466 (558)
++++|++.+... ...+..+....+.+++..|.++
T Consensus 345 ~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 345 TLSHNDWDCNSL-RALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp ECCSSCEEHHHH-HHHTTTCCTTTBCCCCSCCCTT
T ss_pred EcCCCCccchhH-HHHHHHHHhhcccccCceeccc
Confidence 888888886432 2344555666667777777653
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-35 Score=302.43 Aligned_cols=337 Identities=25% Similarity=0.347 Sum_probs=275.8
Q ss_pred CCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCee
Q 037792 32 LPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWAL 111 (558)
Q Consensus 32 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 111 (558)
+++++.|+++++.++. +| .+..+++|++|++++|.++ .++. +..+++|++|++++|.+.+..+ +.++++|++|
T Consensus 45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 5689999999999984 44 4889999999999999999 5565 6899999999999999986544 9999999999
Q ss_pred eccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccc
Q 037792 112 YLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLS 191 (558)
Q Consensus 112 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 191 (558)
++++|.+++..+ +..+++|++|++++|.+.+ .+ .+..+++|+.|+++ |.+.+.. .+..+++|+.|++++|.+.
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVS 190 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCC
Confidence 999999986533 8899999999999999985 34 48899999999997 4454332 3889999999999999988
Q ss_pred cccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCC---------CCCcCEEEccCCcCCCCchhhccCCC
Q 037792 192 GSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINE---------HSNLRTLLLRGNYLQGPIPHQLCHLR 262 (558)
Q Consensus 192 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~---------~~~L~~L~l~~n~l~~~~~~~~~~l~ 262 (558)
... ....+++|++|++++|.+.+..+ +..+++|+.|++++|. +++|+.|++++|.+++..+ +..++
T Consensus 191 ~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~ 265 (466)
T 1o6v_A 191 DIS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLT 265 (466)
T ss_dssp CCG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCT
T ss_pred CCh-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCC
Confidence 753 23478999999999999986655 6778899999999883 5688999999998886554 78888
Q ss_pred CCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecc
Q 037792 263 KLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTK 342 (558)
Q Consensus 263 ~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (558)
+|+.|++++|++++..+ +..
T Consensus 266 ~L~~L~l~~n~l~~~~~--~~~---------------------------------------------------------- 285 (466)
T 1o6v_A 266 KLTELKLGANQISNISP--LAG---------------------------------------------------------- 285 (466)
T ss_dssp TCSEEECCSSCCCCCGG--GTT----------------------------------------------------------
T ss_pred CCCEEECCCCccCcccc--ccC----------------------------------------------------------
Confidence 99999999998864322 222
Q ss_pred cccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhc
Q 037792 343 NRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQL 422 (558)
Q Consensus 343 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l 422 (558)
+++|+.|++++|.+.+..+ +..+++|++|++++|.+++..| +..+++|+.|++++|.+++. ..+
T Consensus 286 ----------l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l 349 (466)
T 1o6v_A 286 ----------LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSL 349 (466)
T ss_dssp ----------CTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGG
T ss_pred ----------CCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhh
Confidence 6778888888888885433 7788888888888888887665 67888888888888888854 467
Q ss_pred ccCCCCCEEecCCCCCcCCCCCCcccCCCCcccccCCCCCCC
Q 037792 423 TELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCG 464 (558)
Q Consensus 423 ~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~N~~~C~ 464 (558)
..+++|+.|++++|++++..| ...++.++.+++++|++..-
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 350 ANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp TTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEECC
T ss_pred ccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccCC
Confidence 788888888888888887776 56667788888888887653
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-35 Score=311.84 Aligned_cols=334 Identities=21% Similarity=0.188 Sum_probs=225.4
Q ss_pred CCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCee
Q 037792 32 LPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWAL 111 (558)
Q Consensus 32 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 111 (558)
+++++.+++++|.++...+..+.++++|++|++++|.++ .++...+..+++|++|++++|.+.+..+..|.++++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 456666666666666554455666666666666666666 3443334566666666666666665555556666666666
Q ss_pred eccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccc
Q 037792 112 YLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLS 191 (558)
Q Consensus 112 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 191 (558)
++++|.++...+..|..+++|++|++++|.+++..|..|.++++|+.|++++|.+.+.. +..+++|+.|++++|.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 66666666544444566666666666666666665656666666666666666665432 344556666666666655
Q ss_pred cccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEccc
Q 037792 192 GSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISH 271 (558)
Q Consensus 192 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 271 (558)
+.. ..++|+.|++++|.+....+ . ..++|+.|++++|.+++ +..+..+++|+.|++++
T Consensus 206 ~l~----~~~~L~~L~ls~n~l~~~~~-~---------------~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~ 263 (597)
T 3oja_B 206 TLA----IPIAVEELDASHNSINVVRG-P---------------VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSY 263 (597)
T ss_dssp EEE----CCTTCSEEECCSSCCCEEEC-S---------------CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCS
T ss_pred ccc----CCchhheeeccCCccccccc-c---------------cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCC
Confidence 432 23456666666666542211 1 13567888888888875 36788889999999999
Q ss_pred CcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccch
Q 037792 272 NRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGD 351 (558)
Q Consensus 272 n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (558)
|.+++..|..+..
T Consensus 264 N~l~~~~~~~~~~------------------------------------------------------------------- 276 (597)
T 3oja_B 264 NELEKIMYHPFVK------------------------------------------------------------------- 276 (597)
T ss_dssp SCCCEEESGGGTT-------------------------------------------------------------------
T ss_pred CccCCCCHHHhcC-------------------------------------------------------------------
Confidence 9888777766654
Q ss_pred hhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEE
Q 037792 352 ILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTF 431 (558)
Q Consensus 352 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L 431 (558)
+++|+.|++++|.+++ +|..+..+++|++|+|++|.++ .+|..+..+++|+.|+|++|.++... +..+++|+.|
T Consensus 277 -l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L 350 (597)
T 3oja_B 277 -MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNL 350 (597)
T ss_dssp -CSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEE
T ss_pred -ccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEE
Confidence 6788889999998885 4666677889999999999988 56777888899999999999988543 5667889999
Q ss_pred ecCCCCCcCCCCCCcccCCCCcccccCCCCCCCC
Q 037792 432 DVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGP 465 (558)
Q Consensus 432 ~l~~N~l~~~~p~~~~~~~l~~~~~~~N~~~C~~ 465 (558)
++++|+++|.+.. ..+..+....+.+++..|+.
T Consensus 351 ~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 351 TLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKI 383 (597)
T ss_dssp ECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCT
T ss_pred EeeCCCCCChhHH-HHHHHHhhhccccccccCCc
Confidence 9999998875432 34555666667777777765
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-35 Score=300.47 Aligned_cols=336 Identities=18% Similarity=0.143 Sum_probs=248.9
Q ss_pred CcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCC
Q 037792 5 SAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSL 84 (558)
Q Consensus 5 ~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 84 (558)
.++++|++|++++|.++ .+| .+. .+++|++|++++|.+++. | ++.+++|++|++++|.++ .++ +..+++|
T Consensus 39 ~~l~~L~~L~Ls~n~l~-~~~-~l~-~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~-~~~---~~~l~~L 108 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSIT-DMT-GIE-KLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLT-NLD---VTPLTKL 108 (457)
T ss_dssp HHHTTCCEEECCSSCCC-CCT-TGG-GCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCS-CCC---CTTCTTC
T ss_pred hHcCCCCEEEccCCCcc-cCh-hhc-ccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCc-eee---cCCCCcC
Confidence 45789999999999998 566 444 489999999999999864 3 888999999999999998 454 5789999
Q ss_pred CEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccC
Q 037792 85 EWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKN 164 (558)
Q Consensus 85 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 164 (558)
++|++++|++++. + +..+++|++|++++|.+++. .+..+++|++|++++|...+.+ .+..+++|+.|++++|
T Consensus 109 ~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 109 TYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN 180 (457)
T ss_dssp CEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC
Confidence 9999999998863 3 88899999999999998864 2677888999999888554444 3677888888888888
Q ss_pred cCcccchhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCC--------
Q 037792 165 LLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINE-------- 236 (558)
Q Consensus 165 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-------- 236 (558)
.+++ +| +..+++|+.|++++|.+++.. ...+++|++|++++|++++ +| +..+++|+.|++++|.
T Consensus 181 ~l~~-l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~ 252 (457)
T 3bz5_A 181 KITE-LD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVST 252 (457)
T ss_dssp CCCC-CC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTT
T ss_pred ccce-ec--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHH
Confidence 8885 34 777888888888888887752 3367888888888888876 44 5666667777766662
Q ss_pred CCCcC----------EEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcc
Q 037792 237 HSNLR----------TLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYL 306 (558)
Q Consensus 237 ~~~L~----------~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~ 306 (558)
+++|+ .|++++|.+.+.+| +..+++|+.|++++|+..+.+|....++...
T Consensus 253 l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L------------------ 312 (457)
T 3bz5_A 253 LSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITEL------------------ 312 (457)
T ss_dssp CTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCC------------------
T ss_pred CCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEe------------------
Confidence 23333 34444444333333 3456677777777776655544322111100
Q ss_pred cccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeecc
Q 037792 307 DDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLS 386 (558)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 386 (558)
.-..+++|+.|++++|++++. + +..+++|++|+++
T Consensus 313 ------------------------------------------~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~ 347 (457)
T 3bz5_A 313 ------------------------------------------DLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCV 347 (457)
T ss_dssp ------------------------------------------CCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECC
T ss_pred ------------------------------------------chhhcccCCEEECCCCccccc-c--cccCCcCcEEECC
Confidence 001157889999999999874 3 8889999999999
Q ss_pred CCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCC
Q 037792 387 HNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD 444 (558)
Q Consensus 387 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 444 (558)
+|++++ ++.|+.|++++|.+.+. ..+..|..+++++|+++|.+|.
T Consensus 348 ~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 348 NAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp SSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred CCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence 999985 25677778888988865 3456788899999999999986
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=293.29 Aligned_cols=334 Identities=21% Similarity=0.203 Sum_probs=276.9
Q ss_pred cCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCC
Q 037792 6 AQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLE 85 (558)
Q Consensus 6 ~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 85 (558)
.+++++.|+++++.+. .+|..++..+++|++|++++|.+++..+.+|.++++|++|++++|.++ .+++..+.++++|+
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCC
Confidence 5689999999999998 899998888999999999999999888889999999999999999999 56666668999999
Q ss_pred EEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCc
Q 037792 86 WLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNL 165 (558)
Q Consensus 86 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 165 (558)
+|++++|.+....+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+++|+.|++++|.
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL 197 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence 999999999966555679999999999999999988888899999999999999999864 35678999999999998
Q ss_pred CcccchhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEc
Q 037792 166 LEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLL 245 (558)
Q Consensus 166 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l 245 (558)
+.+. ...++|+.|++++|.+...+... .++|+.|++++|.+++. ..+.. +++|++|++
T Consensus 198 l~~~-----~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~--~~l~~-------------l~~L~~L~L 255 (390)
T 3o6n_A 198 LSTL-----AIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLN-------------YPGLVEVDL 255 (390)
T ss_dssp CSEE-----ECCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCCC--GGGGG-------------CTTCSEEEC
T ss_pred cccc-----CCCCcceEEECCCCeeeeccccc--cccccEEECCCCCCccc--HHHcC-------------CCCccEEEC
Confidence 8742 34568999999999998875544 47999999999999853 34443 567777888
Q ss_pred cCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccC
Q 037792 246 RGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDG 325 (558)
Q Consensus 246 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (558)
++|.+++..|..+..+++|++|++++|++++ +|..+..
T Consensus 256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~----------------------------------------- 293 (390)
T 3o6n_A 256 SYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQP----------------------------------------- 293 (390)
T ss_dssp CSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSC-----------------------------------------
T ss_pred CCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCC-----------------------------------------
Confidence 8888888888999999999999999999873 2221111
Q ss_pred CCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCC
Q 037792 326 NDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIE 405 (558)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 405 (558)
+++|+.|++++|.+. .+|..+..+++|++|++++|++++. + +..+++|+
T Consensus 294 ---------------------------l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~ 342 (390)
T 3o6n_A 294 ---------------------------IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLK 342 (390)
T ss_dssp ---------------------------CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCS
T ss_pred ---------------------------CCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCC
Confidence 688999999999999 6677788999999999999999865 3 67889999
Q ss_pred eEeCCCCcccccCchhcccCCCCCEEecCCCCCcCC
Q 037792 406 SLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGP 441 (558)
Q Consensus 406 ~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~ 441 (558)
.|++++|.+.+.....+ +..+....+..+...+.
T Consensus 343 ~L~l~~N~~~~~~~~~~--~~~~~~~~~~~~~~~c~ 376 (390)
T 3o6n_A 343 NLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCK 376 (390)
T ss_dssp EEECCSSCEEHHHHHHH--TTTCCTTTBCCCCSCCC
T ss_pred EEEcCCCCccchhHHHH--HHHHHhhcccccCceec
Confidence 99999999986433322 23344444455554443
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-35 Score=303.49 Aligned_cols=383 Identities=22% Similarity=0.283 Sum_probs=199.1
Q ss_pred cCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCC-------------CEEEcccccCCcc
Q 037792 6 AQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGL-------------RLLDVSSNNFAGE 72 (558)
Q Consensus 6 ~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L-------------~~L~L~~n~l~~~ 72 (558)
+.++|++|++++|.+ |.+|..+.. +++|++|++++|.+++..|..++++.+| ++|++++|.++ .
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~-L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~ 85 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-S 85 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-C
T ss_pred ccccchhhhcccCch-hhCChhHhc-ccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-c
Confidence 467899999999999 599988865 8999999999999988889888887764 88888888888 4
Q ss_pred chHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccC
Q 037792 73 LSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGN 152 (558)
Q Consensus 73 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 152 (558)
+|. ..++|++|++++|.+++ +|.. .++|++|++++|.+++. +.. .++|++|++++|.+++ +| .+++
T Consensus 86 lp~----~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~ 151 (454)
T 1jl5_A 86 LPE----LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQN 151 (454)
T ss_dssp CCS----CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTT
T ss_pred CCC----CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCC
Confidence 554 24678888888888876 4432 36777777777777642 211 2577777777777774 55 4777
Q ss_pred CCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEc
Q 037792 153 FSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDL 232 (558)
Q Consensus 153 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l 232 (558)
+++|++|++++|++.+ +|.. .++|++|++++|.+++.+ .+..+++|++|++++|.+++ +|.. .++|+.|++
T Consensus 152 l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l 222 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVA 222 (454)
T ss_dssp CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEEC
T ss_pred CCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEEC
Confidence 7777777777777763 3432 246777777777777643 33367777777777777664 2321 146666666
Q ss_pred CCC---------CCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhh
Q 037792 233 RIN---------EHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLR 303 (558)
Q Consensus 233 ~~n---------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~ 303 (558)
++| .+++|++|++++|.+++ +|. ..++|+.|++++|++++ +|....++....+..+.+.+.+..
T Consensus 223 ~~n~l~~lp~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~~~~L~~L~ls~N~l~~l~~~-- 295 (454)
T 1jl5_A 223 GNNILEELPELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPELPQSLTFLDVSENIFSGLSEL-- 295 (454)
T ss_dssp CSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSEESCC--
T ss_pred cCCcCCcccccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcccCcCCEEECcCCccCcccCc--
Confidence 666 24556677777776664 232 23566777777776653 443333333333222222211000
Q ss_pred hcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCee
Q 037792 304 MYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGL 383 (558)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 383 (558)
... ...-.+..+....++. ..++|+.|++++|++++ +|.. +++|++|
T Consensus 296 -----------~~~-----------------L~~L~l~~N~l~~i~~-~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L 342 (454)
T 1jl5_A 296 -----------PPN-----------------LYYLNASSNEIRSLCD-LPPSLEELNVSNNKLIE-LPAL---PPRLERL 342 (454)
T ss_dssp -----------CTT-----------------CCEEECCSSCCSEECC-CCTTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred -----------CCc-----------------CCEEECcCCcCCcccC-CcCcCCEEECCCCcccc-cccc---CCcCCEE
Confidence 000 0000111111111111 12467778888877774 4443 4777788
Q ss_pred eccCCcCCccchhhhhccccCCeEeCCCCcccc--cCchhcccC-------------CCCCEEecCCCCCcC--CCCCCc
Q 037792 384 NLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG--QIPPQLTEL-------------HSLSTFDVSYNNLSG--PIPDKE 446 (558)
Q Consensus 384 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~--~~~~~l~~l-------------~~L~~L~l~~N~l~~--~~p~~~ 446 (558)
++++|.+++ +|. .+++|++|++++|++++ .+|..+..+ ++|+.|++++|++++ .+|
T Consensus 343 ~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP--- 415 (454)
T 1jl5_A 343 IASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP--- 415 (454)
T ss_dssp ECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------------------------------
T ss_pred ECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch---
Confidence 888887773 444 36777888888888776 566666666 677777777777776 344
Q ss_pred ccCCCCcccccCCCCCC
Q 037792 447 QFSTFDESSYRGNLFLC 463 (558)
Q Consensus 447 ~~~~l~~~~~~~N~~~C 463 (558)
.++..+.+.+|.+.|
T Consensus 416 --~sl~~L~~~~~~~~~ 430 (454)
T 1jl5_A 416 --ESVEDLRMNSERVVD 430 (454)
T ss_dssp -----------------
T ss_pred --hhHhheeCcCcccCC
Confidence 334455555555444
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-33 Score=279.82 Aligned_cols=304 Identities=21% Similarity=0.319 Sum_probs=234.0
Q ss_pred CCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCee
Q 037792 32 LPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWAL 111 (558)
Q Consensus 32 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 111 (558)
+++|++|+++++.+... + .+..+++|++|++++|.++ .++. +..+++|++|++++|.+.+. +.+.++++|++|
T Consensus 43 l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L 115 (347)
T 4fmz_A 43 LESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL 115 (347)
T ss_dssp HTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred cccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence 67888888888888743 3 4778888888888888887 5555 57788888888888887752 468888888888
Q ss_pred eccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccc
Q 037792 112 YLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLS 191 (558)
Q Consensus 112 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 191 (558)
++++|.+....+ +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.
T Consensus 116 ~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 116 YLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp ECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred ECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence 888888875433 7788888888888886554443 37888888888888888874433 778888888888888887
Q ss_pred cccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEccc
Q 037792 192 GSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISH 271 (558)
Q Consensus 192 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 271 (558)
+... ...+++|+.|++++|.+.+..+ +.. +++|++|++++|.+++..+ +..+++|++|++++
T Consensus 191 ~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~-------------~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~ 252 (347)
T 4fmz_A 191 DISP-LASLTSLHYFTAYVNQITDITP--VAN-------------MTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGT 252 (347)
T ss_dssp CCGG-GGGCTTCCEEECCSSCCCCCGG--GGG-------------CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred cccc-ccCCCccceeecccCCCCCCch--hhc-------------CCcCCEEEccCCccCCCcc--hhcCCCCCEEECCC
Confidence 6554 3377888899988888875443 433 4566666677777775433 88889999999999
Q ss_pred CcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccch
Q 037792 272 NRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGD 351 (558)
Q Consensus 272 n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (558)
|++++. +.+..
T Consensus 253 n~l~~~--~~~~~------------------------------------------------------------------- 263 (347)
T 4fmz_A 253 NQISDI--NAVKD------------------------------------------------------------------- 263 (347)
T ss_dssp SCCCCC--GGGTT-------------------------------------------------------------------
T ss_pred CccCCC--hhHhc-------------------------------------------------------------------
Confidence 988632 11211
Q ss_pred hhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEE
Q 037792 352 ILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTF 431 (558)
Q Consensus 352 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L 431 (558)
+++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..++.+++|++|++++|.+++..| +..+++|++|
T Consensus 264 -l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 338 (347)
T 4fmz_A 264 -LTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSA 338 (347)
T ss_dssp -CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEE
T ss_pred -CCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhcccee
Confidence 67899999999998854 458889999999999999998888999999999999999999987655 7889999999
Q ss_pred ecCCCCCc
Q 037792 432 DVSYNNLS 439 (558)
Q Consensus 432 ~l~~N~l~ 439 (558)
++++|+++
T Consensus 339 ~l~~N~i~ 346 (347)
T 4fmz_A 339 DFANQVIK 346 (347)
T ss_dssp SSSCC---
T ss_pred ehhhhccc
Confidence 99999886
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-33 Score=277.71 Aligned_cols=306 Identities=23% Similarity=0.340 Sum_probs=255.5
Q ss_pred CcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCC
Q 037792 5 SAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSL 84 (558)
Q Consensus 5 ~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 84 (558)
+.+++|++|+++++.+. .+|. + ..+++|++|++++|.+++..+ +.++++|++|++++|.++ .++. +..+++|
T Consensus 41 ~~l~~L~~L~l~~~~i~-~~~~-~-~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L 112 (347)
T 4fmz_A 41 EELESITKLVVAGEKVA-SIQG-I-EYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISA--LQNLTNL 112 (347)
T ss_dssp HHHTTCSEEECCSSCCC-CCTT-G-GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTC
T ss_pred hhcccccEEEEeCCccc-cchh-h-hhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-CchH--HcCCCcC
Confidence 46789999999999998 7775 3 449999999999999995533 999999999999999998 5653 6889999
Q ss_pred CEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccC
Q 037792 85 EWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKN 164 (558)
Q Consensus 85 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 164 (558)
++|++++|.+.+..+ +..+++|++|++++|..... ...+..+++|++|++++|.+....+ +..+++|+.|++++|
T Consensus 113 ~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp SEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred CEEECcCCcccCchh--hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence 999999999986433 89999999999999976544 3448899999999999999985544 889999999999999
Q ss_pred cCcccchhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEE
Q 037792 165 LLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLL 244 (558)
Q Consensus 165 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~ 244 (558)
.+.+..+ +..+++|+.|++++|.+.+... ...+++|++|++++|.+++..+ +.. +++|++|+
T Consensus 188 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~-------------l~~L~~L~ 249 (347)
T 4fmz_A 188 QIEDISP--LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LAN-------------LSQLTWLE 249 (347)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTT-------------CTTCCEEE
T ss_pred ccccccc--ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhc-------------CCCCCEEE
Confidence 9985433 8889999999999999987665 4478999999999999985443 443 46667777
Q ss_pred ccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhcc
Q 037792 245 LRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLD 324 (558)
Q Consensus 245 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (558)
+++|.+++. ..+..+++|++|++++|++++. + .+..
T Consensus 250 l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~~~~---------------------------------------- 285 (347)
T 4fmz_A 250 IGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-S-VLNN---------------------------------------- 285 (347)
T ss_dssp CCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GGGG----------------------------------------
T ss_pred CCCCccCCC--hhHhcCCCcCEEEccCCccCCC-h-hhcC----------------------------------------
Confidence 777777753 4688999999999999998742 1 1221
Q ss_pred CCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccC
Q 037792 325 GNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMI 404 (558)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 404 (558)
+++|+.|++++|.+++..+..+..+++|++|++++|++++..| +..+++|
T Consensus 286 ----------------------------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 335 (347)
T 4fmz_A 286 ----------------------------LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKM 335 (347)
T ss_dssp ----------------------------CTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTC
T ss_pred ----------------------------CCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhcc
Confidence 7889999999999998888999999999999999999997766 8899999
Q ss_pred CeEeCCCCccc
Q 037792 405 ESLDLSHNKLN 415 (558)
Q Consensus 405 ~~L~Ls~N~i~ 415 (558)
++|++++|.|+
T Consensus 336 ~~L~l~~N~i~ 346 (347)
T 4fmz_A 336 DSADFANQVIK 346 (347)
T ss_dssp SEESSSCC---
T ss_pred ceeehhhhccc
Confidence 99999999986
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=300.14 Aligned_cols=313 Identities=21% Similarity=0.220 Sum_probs=270.6
Q ss_pred cCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCC
Q 037792 6 AQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLE 85 (558)
Q Consensus 6 ~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 85 (558)
.+.+++.+++++|.+. .+|..++..+++|++|++++|.+++..|..|..+++|++|++++|.++ .+++..+.++++|+
T Consensus 49 ~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCC
Confidence 4678999999999998 899998888999999999999999888889999999999999999999 56666678999999
Q ss_pred EEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCc
Q 037792 86 WLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNL 165 (558)
Q Consensus 86 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 165 (558)
+|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+++.. +..+++|+.|++++|.
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNL 203 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSC
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCc
Confidence 9999999999766667899999999999999999888889999999999999999998653 5668899999999998
Q ss_pred CcccchhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEc
Q 037792 166 LEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLL 245 (558)
Q Consensus 166 l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l 245 (558)
+.+ +...++|+.|++++|.+...+... .++|+.|++++|.+++. ..+.. +++|+.|++
T Consensus 204 l~~-----l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~--~~l~~-------------l~~L~~L~L 261 (597)
T 3oja_B 204 LST-----LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLN-------------YPGLVEVDL 261 (597)
T ss_dssp CSE-----EECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCC--GGGGG-------------CTTCSEEEC
T ss_pred ccc-----ccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCC--hhhcc-------------CCCCCEEEC
Confidence 874 344578999999999998776554 37899999999999853 44443 567777888
Q ss_pred cCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccC
Q 037792 246 RGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDG 325 (558)
Q Consensus 246 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (558)
++|.+++..|..+..+++|+.|++++|.+++ +|..+..
T Consensus 262 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~----------------------------------------- 299 (597)
T 3oja_B 262 SYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQP----------------------------------------- 299 (597)
T ss_dssp CSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSC-----------------------------------------
T ss_pred CCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCccccc-----------------------------------------
Confidence 8888988889999999999999999999974 2222111
Q ss_pred CCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCC
Q 037792 326 NDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIE 405 (558)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 405 (558)
+++|+.|++++|.++ .+|..+..+++|+.|+|++|.+++.. +..+++|+
T Consensus 300 ---------------------------l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~ 348 (597)
T 3oja_B 300 ---------------------------IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLK 348 (597)
T ss_dssp ---------------------------CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCS
T ss_pred ---------------------------CCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCC
Confidence 688999999999999 67778899999999999999998653 67789999
Q ss_pred eEeCCCCcccccC
Q 037792 406 SLDLSHNKLNGQI 418 (558)
Q Consensus 406 ~L~Ls~N~i~~~~ 418 (558)
.|++++|.+.+..
T Consensus 349 ~L~l~~N~~~~~~ 361 (597)
T 3oja_B 349 NLTLSHNDWDCNS 361 (597)
T ss_dssp EEECCSSCEEHHH
T ss_pred EEEeeCCCCCChh
Confidence 9999999998653
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-35 Score=304.03 Aligned_cols=363 Identities=18% Similarity=0.180 Sum_probs=276.5
Q ss_pred CCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCC----CCchhhhCCCCCCEEEcccccCCccchHHHHhcCC
Q 037792 7 QHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEG----NIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCF 82 (558)
Q Consensus 7 ~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 82 (558)
.++|++||+++|.++......++..+++|++|++++|.+++ .++..+..+++|++|++++|.+++..+..++..++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 46789999999999844444546668999999999999884 34677888999999999999998656666666677
Q ss_pred ----CCCEEEccCCccCc----cCchhhcCCCccCeeeccccccccccchhhc-----CCCCCCEEEccCCcCCCCC---
Q 037792 83 ----SLEWLDLSNNNFVG----QIFPNYMNLTRLWALYLYNNNFSGKIKDGLL-----RSTELMVLDISNNRLSGHI--- 146 (558)
Q Consensus 83 ----~L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~--- 146 (558)
+|++|++++|.+.. .++..+..+++|++|++++|.++...+..+. ..++|++|++++|.++...
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 79999999999885 3477889999999999999998755444332 2568999999999988643
Q ss_pred -cccccCCCCCcEEEcccCcCcccchhhhc-----CCcccceeecccccccccc----CCCc-CCCCccEEEccCCcCcc
Q 037792 147 -PSWMGNFSTLQILSMSKNLLEGNIPVQFN-----NLASLQILNISENNLSGSM----ISTL-NLSSVEHLYLQNNALGG 215 (558)
Q Consensus 147 -~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~i~~~~----~~~~-~~~~L~~L~l~~n~l~~ 215 (558)
+..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.++... +..+ .+++|++|++++|.+.+
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 55566789999999999998765444443 3568999999999887642 2222 67899999999998875
Q ss_pred cchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCC----chhhccCCCCCCEEEcccCcCccccChhhhcccccccc
Q 037792 216 SIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGP----IPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVE 291 (558)
Q Consensus 216 ~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~ 291 (558)
.....+... + ...+++|++|++++|.+++. ++..+..+++|++|++++|++++..+..+.....
T Consensus 242 ~~~~~l~~~-------~-~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~---- 309 (461)
T 1z7x_W 242 VGMAELCPG-------L-LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL---- 309 (461)
T ss_dssp HHHHHHHHH-------H-TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHT----
T ss_pred HHHHHHHHH-------H-hcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhc----
Confidence 432222110 0 00256778888888888754 5677788999999999999986544433332100
Q ss_pred cCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCC--
Q 037792 292 NGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGD-- 369 (558)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-- 369 (558)
...++|+.|++++|.+++.
T Consensus 310 -----------------------------------------------------------~~~~~L~~L~L~~n~l~~~~~ 330 (461)
T 1z7x_W 310 -----------------------------------------------------------EPGCQLESLWVKSCSFTAACC 330 (461)
T ss_dssp -----------------------------------------------------------STTCCCCEEECTTSCCBGGGH
T ss_pred -----------------------------------------------------------cCCccceeeEcCCCCCchHHH
Confidence 0036899999999999865
Q ss_pred --CCccccCccCCCeeeccCCcCCccchhhhhc-----cccCCeEeCCCCcccc----cCchhcccCCCCCEEecCCCCC
Q 037792 370 --IPSEIGDLQNIHGLNLSHNFLSGSIPESFSN-----LKMIESLDLSHNKLNG----QIPPQLTELHSLSTFDVSYNNL 438 (558)
Q Consensus 370 --~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~Ls~N~i~~----~~~~~l~~l~~L~~L~l~~N~l 438 (558)
++..+..+++|++|++++|.+++..+..+.. .++|++|++++|.++. .+|..+..+++|++|++++|++
T Consensus 331 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 331 SHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp HHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred HHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 4556677899999999999998766665543 6799999999999986 6788888899999999999998
Q ss_pred cC
Q 037792 439 SG 440 (558)
Q Consensus 439 ~~ 440 (558)
+.
T Consensus 411 ~~ 412 (461)
T 1z7x_W 411 GD 412 (461)
T ss_dssp CH
T ss_pred CH
Confidence 75
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=283.62 Aligned_cols=222 Identities=20% Similarity=0.182 Sum_probs=178.4
Q ss_pred CChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhc
Q 037792 24 LPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYM 103 (558)
Q Consensus 24 ~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~ 103 (558)
.+..+.. +++|++|++++|.+++. | .+..+++|++|++++|.++ .++ +..+++|++|++++|.+++. .+.
T Consensus 34 ~~~~~~~-l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~-~~~---~~~l~~L~~L~Ls~N~l~~~---~~~ 103 (457)
T 3bz5_A 34 DTISEEQ-LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNIT-TLD---LSQNTNLTYLACDSNKLTNL---DVT 103 (457)
T ss_dssp SEEEHHH-HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCS-CCC---CTTCTTCSEEECCSSCCSCC---CCT
T ss_pred cccChhH-cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCC-eEc---cccCCCCCEEECcCCCCcee---ecC
Confidence 3444444 89999999999999964 5 7899999999999999998 455 57899999999999999874 288
Q ss_pred CCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCccccee
Q 037792 104 NLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQIL 183 (558)
Q Consensus 104 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 183 (558)
++++|++|++++|.+++. + +..+++|++|++++|++++. + ++.+++|+.|++++|...+.. .+..+++|+.|
T Consensus 104 ~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L 175 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTL 175 (457)
T ss_dssp TCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEE
T ss_pred CCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEE
Confidence 999999999999999864 3 78899999999999999964 3 788999999999999654444 47888999999
Q ss_pred eccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCC
Q 037792 184 NISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRK 263 (558)
Q Consensus 184 ~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 263 (558)
++++|.+++.+ ...+++|++|++++|.+++. .+.. +++|+.|++++|.+++ +| +..+++
T Consensus 176 ~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~-------------l~~L~~L~Ls~N~l~~-ip--~~~l~~ 234 (457)
T 3bz5_A 176 DCSFNKITELD--VSQNKLLNRLNCDTNNITKL---DLNQ-------------NIQLTFLDCSSNKLTE-ID--VTPLTQ 234 (457)
T ss_dssp ECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC---CCTT-------------CTTCSEEECCSSCCSC-CC--CTTCTT
T ss_pred ECCCCccceec--cccCCCCCEEECcCCcCCee---cccc-------------CCCCCEEECcCCcccc-cC--ccccCC
Confidence 99999998865 44789999999999998854 1333 4666777777777775 34 777888
Q ss_pred CCEEEcccCcCccccChhhhc
Q 037792 264 LGIMDISHNRLNGSIPACITN 284 (558)
Q Consensus 264 L~~L~l~~n~l~~~~p~~~~~ 284 (558)
|+.|++++|++++..+..+.+
T Consensus 235 L~~L~l~~N~l~~~~~~~l~~ 255 (457)
T 3bz5_A 235 LTYFDCSVNPLTELDVSTLSK 255 (457)
T ss_dssp CSEEECCSSCCSCCCCTTCTT
T ss_pred CCEEEeeCCcCCCcCHHHCCC
Confidence 888888888887654444433
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=274.70 Aligned_cols=258 Identities=34% Similarity=0.539 Sum_probs=208.6
Q ss_pred CCCCEEEccCCcCCC--CCcccccCCCCCcEEEccc-CcCcccchhhhcCCcccceeeccccccccccCCCc-CCCCccE
Q 037792 130 TELMVLDISNNRLSG--HIPSWMGNFSTLQILSMSK-NLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEH 205 (558)
Q Consensus 130 ~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~ 205 (558)
.+++.|++++|.+.+ .+|..+.++++|++|++++ |.+.+..|..+..+++|++|++++|.+++..+..+ .+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 466777777777776 6666777777777777774 66666667777777777777777777765444444 6777777
Q ss_pred EEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCC-CCCEEEcccCcCccccChhhhc
Q 037792 206 LYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLR-KLGIMDISHNRLNGSIPACITN 284 (558)
Q Consensus 206 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~p~~~~~ 284 (558)
|++++|.+++..|..+..+ ++|++|++++|.+++.+|..+..++ +|++|++++|++++.+|..+..
T Consensus 130 L~Ls~N~l~~~~p~~~~~l-------------~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~ 196 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSL-------------PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196 (313)
T ss_dssp EECCSSEEESCCCGGGGGC-------------TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG
T ss_pred EeCCCCccCCcCChHHhcC-------------CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC
Confidence 7777777777777776653 4556666666777777788888887 8999999999998777776654
Q ss_pred ccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCC
Q 037792 285 MLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNN 364 (558)
Q Consensus 285 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n 364 (558)
++ |+.|++++|
T Consensus 197 --------------------------------------------------------------------l~-L~~L~Ls~N 207 (313)
T 1ogq_A 197 --------------------------------------------------------------------LN-LAFVDLSRN 207 (313)
T ss_dssp --------------------------------------------------------------------CC-CSEEECCSS
T ss_pred --------------------------------------------------------------------Cc-ccEEECcCC
Confidence 34 889999999
Q ss_pred CCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCC
Q 037792 365 ELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD 444 (558)
Q Consensus 365 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 444 (558)
.+++..|..+..+++|++|++++|.+++.+|. +..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|.
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 99988899999999999999999999976665 88899999999999999999999999999999999999999999999
Q ss_pred CcccCCCCcccccCCCCCCCCCCCCCC
Q 037792 445 KEQFSTFDESSYRGNLFLCGPAINKGC 471 (558)
Q Consensus 445 ~~~~~~l~~~~~~~N~~~C~~~~~~~c 471 (558)
...++.++.+++.+||+.|+.|.. .|
T Consensus 287 ~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 287 GGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp STTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred CccccccChHHhcCCCCccCCCCC-CC
Confidence 888899999999999999998765 35
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=283.61 Aligned_cols=363 Identities=20% Similarity=0.232 Sum_probs=233.8
Q ss_pred CCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCC-------------CCEEEccCCccCccC
Q 037792 32 LPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFS-------------LEWLDLSNNNFVGQI 98 (558)
Q Consensus 32 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~-------------L~~L~l~~n~i~~~~ 98 (558)
..+|++|++++|.+ +.+|.+++++++|++|++++|.+++.+|..+ +.+.+ +++|++++|.+++.
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l- 86 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSSL- 86 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCccccC-
Confidence 57999999999999 6899999999999999999999987788764 45554 59999999998863
Q ss_pred chhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCc
Q 037792 99 FPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLA 178 (558)
Q Consensus 99 ~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 178 (558)
|. -.++|++|++++|.+++ .|.. +++|++|++++|.+++ ++.. .++|++|++++|.+.+ +| .++.++
T Consensus 87 p~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~ 153 (454)
T 1jl5_A 87 PE---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSS 153 (454)
T ss_dssp CS---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCT
T ss_pred CC---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCC
Confidence 33 24789999999999986 4543 4899999999999985 3321 2689999999999995 66 599999
Q ss_pred ccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCC-------CCcCEEEccCCcCC
Q 037792 179 SLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEH-------SNLRTLLLRGNYLQ 251 (558)
Q Consensus 179 ~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~-------~~L~~L~l~~n~l~ 251 (558)
+|++|++++|.+++.+.. .++|++|++++|.+++ +| .+..+++|+.|++++|.+ ++|++|++++|.++
T Consensus 154 ~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 154 FLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE 228 (454)
T ss_dssp TCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS
T ss_pred CCCEEECCCCcCcccCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCC
Confidence 999999999999875432 3699999999999986 55 688999999999999954 46999999999998
Q ss_pred CCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCcccc
Q 037792 252 GPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRML 331 (558)
Q Consensus 252 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (558)
.+| .+..+++|++|++++|++++ +|..+.++....+..+.+.+.+.. .
T Consensus 229 -~lp-~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~l~~~-------------~---------------- 276 (454)
T 1jl5_A 229 -ELP-ELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPEL-------------P---------------- 276 (454)
T ss_dssp -SCC-CCTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCC-------------C----------------
T ss_pred -ccc-ccCCCCCCCEEECCCCcCCc-ccccccccCEEECCCCcccccCcc-------------c----------------
Confidence 566 48999999999999999984 554444444333333332221100 0
Q ss_pred ccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCc-cCCCeeeccCCcCCccchhhhhccccCCeEeCC
Q 037792 332 GALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDL-QNIHGLNLSHNFLSGSIPESFSNLKMIESLDLS 410 (558)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 410 (558)
+. .....+..+....++ ...++|+.|++++|.+++ +..+ ++|++|++++|++++ +|.. +++|++|+++
T Consensus 277 ~~-L~~L~ls~N~l~~l~-~~~~~L~~L~l~~N~l~~-----i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~ 345 (454)
T 1jl5_A 277 QS-LTFLDVSENIFSGLS-ELPPNLYYLNASSNEIRS-----LCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIAS 345 (454)
T ss_dssp TT-CCEEECCSSCCSEES-CCCTTCCEEECCSSCCSE-----ECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECC
T ss_pred Cc-CCEEECcCCccCccc-CcCCcCCEEECcCCcCCc-----ccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECC
Confidence 00 011111222222211 113677888888887773 2223 478888888888875 4433 4778888888
Q ss_pred CCcccccCchhcccCCCCCEEecCCCCCcC--CCCC-Cccc-------------CCCCcccccCCCCC
Q 037792 411 HNKLNGQIPPQLTELHSLSTFDVSYNNLSG--PIPD-KEQF-------------STFDESSYRGNLFL 462 (558)
Q Consensus 411 ~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~--~~p~-~~~~-------------~~l~~~~~~~N~~~ 462 (558)
+|.++. +|. .+++|++|++++|++++ .+|. ...+ +.++.+++++|+..
T Consensus 346 ~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~ 409 (454)
T 1jl5_A 346 FNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409 (454)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------
T ss_pred CCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence 888874 444 36788888888888887 4554 2222 45566666666654
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-32 Score=266.25 Aligned_cols=266 Identities=23% Similarity=0.288 Sum_probs=147.4
Q ss_pred CCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcc
Q 037792 83 SLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMS 162 (558)
Q Consensus 83 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 162 (558)
++++|++++|.+.+..+..|.++++|++|++++|.+++..+..+.++++|++|++++|.++ .+|..+. ++|++|+++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECC
Confidence 4444444444444333334444444444444444444444444444444444444444444 2222221 445555555
Q ss_pred cCcCcccchhhhcCCcccceeecccccccc--ccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCC
Q 037792 163 KNLLEGNIPVQFNNLASLQILNISENNLSG--SMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSN 239 (558)
Q Consensus 163 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 239 (558)
+|.+.+..+..+..+++|+.|++++|.++. ..+..+ .+ +|++|++++|.+++ +|..+ .++
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~---------------~~~ 194 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDL---------------PET 194 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSS---------------CSS
T ss_pred CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCccc---------------cCC
Confidence 555443333444445555555555554432 222222 22 55555555555542 22211 134
Q ss_pred cCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhh
Q 037792 240 LRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTV 319 (558)
Q Consensus 240 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (558)
|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..
T Consensus 195 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~----------------------------------- 239 (332)
T 2ft3_A 195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF----------------------------------- 239 (332)
T ss_dssp CSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG-----------------------------------
T ss_pred CCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC-----------------------------------
Confidence 555556666666555566777777777777777776544444433
Q ss_pred hhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhh
Q 037792 320 ELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFS 399 (558)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 399 (558)
+++|+.|++++|.++ .+|..+..+++|++|++++|++++..+..|.
T Consensus 240 ---------------------------------l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 285 (332)
T 2ft3_A 240 ---------------------------------LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285 (332)
T ss_dssp ---------------------------------CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred ---------------------------------CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcc
Confidence 566777777777777 5666677778888888888887766666665
Q ss_pred cc------ccCCeEeCCCCccc--ccCchhcccCCCCCEEecCCCC
Q 037792 400 NL------KMIESLDLSHNKLN--GQIPPQLTELHSLSTFDVSYNN 437 (558)
Q Consensus 400 ~l------~~L~~L~Ls~N~i~--~~~~~~l~~l~~L~~L~l~~N~ 437 (558)
.. ++|+.|++++|.+. ...|..|..+++|+.+++++|+
T Consensus 286 ~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 43 56788888888876 5677778888888888888774
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-31 Score=262.78 Aligned_cols=288 Identities=22% Similarity=0.275 Sum_probs=187.8
Q ss_pred CCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEc
Q 037792 58 GLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDI 137 (558)
Q Consensus 58 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L 137 (558)
++++++++++.++ .+|..+ .+++++|++++|.+++..+..|.++++|++|++++|.+++..|..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 4556666666555 455432 245666666666666555555666666666666666666555666666666666666
Q ss_pred cCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeecccccccc--ccCCCc-CCCCccEEEccCCcCc
Q 037792 138 SNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSG--SMISTL-NLSSVEHLYLQNNALG 214 (558)
Q Consensus 138 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~-~~~~L~~L~l~~n~l~ 214 (558)
++|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+.. ..+..+ .+++|++|++++|.++
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 666666 3333332 566667777666665556666666677777777666643 222223 5667777777777665
Q ss_pred ccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCc
Q 037792 215 GSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGY 294 (558)
Q Consensus 215 ~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~ 294 (558)
. +|..+ .++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..
T Consensus 185 ~-l~~~~---------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---------- 238 (330)
T 1xku_A 185 T-IPQGL---------------PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN---------- 238 (330)
T ss_dssp S-CCSSC---------------CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG----------
T ss_pred c-CCccc---------------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC----------
Confidence 2 22221 255667777777777666777888888888888888876544444433
Q ss_pred cccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccc
Q 037792 295 LYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEI 374 (558)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 374 (558)
+++|+.|++++|.++ .+|..+
T Consensus 239 ----------------------------------------------------------l~~L~~L~L~~N~l~-~lp~~l 259 (330)
T 1xku_A 239 ----------------------------------------------------------TPHLRELHLNNNKLV-KVPGGL 259 (330)
T ss_dssp ----------------------------------------------------------STTCCEEECCSSCCS-SCCTTT
T ss_pred ----------------------------------------------------------CCCCCEEECCCCcCc-cCChhh
Confidence 567888888888887 667778
Q ss_pred cCccCCCeeeccCCcCCccchhhhhcc------ccCCeEeCCCCcccc--cCchhcccCCCCCEEecCCCC
Q 037792 375 GDLQNIHGLNLSHNFLSGSIPESFSNL------KMIESLDLSHNKLNG--QIPPQLTELHSLSTFDVSYNN 437 (558)
Q Consensus 375 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l------~~L~~L~Ls~N~i~~--~~~~~l~~l~~L~~L~l~~N~ 437 (558)
..+++|++|++++|++++..+..|... +.++.|++++|.+.. ..|..|..+++++.+++++|+
T Consensus 260 ~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 888888888888888887766666433 678888888888763 567788888888888888875
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.6e-31 Score=264.58 Aligned_cols=304 Identities=23% Similarity=0.300 Sum_probs=241.1
Q ss_pred CCcCCCCCChhhhhcCC-----CccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccC
Q 037792 17 RNSFSGKLPQNMGIVLP-----KLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSN 91 (558)
Q Consensus 17 ~n~l~~~~p~~~~~~l~-----~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~ 91 (558)
.+.+. .+|..+...+| +++.++++++.++ .+|..+. +++++|++++|.++ .++...+.++++|++|++++
T Consensus 13 ~~~l~-~lp~~~~~~cp~~c~c~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~ 87 (332)
T 2ft3_A 13 IPDLD-SLPPTYSAMCPFGCHCHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVN 87 (332)
T ss_dssp -------------CCCCSSCEEETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred CCccc-cCCCcccCCCCCCCcccCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCC
Confidence 34444 67766655444 7999999999998 5666553 68999999999998 56555568899999999999
Q ss_pred CccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcc--c
Q 037792 92 NNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEG--N 169 (558)
Q Consensus 92 n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~ 169 (558)
|.+++..+..+.++++|++|++++|.++. .|..+. ++|++|++++|.+....+..|.++++|+.|++++|.+.. .
T Consensus 88 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 164 (332)
T 2ft3_A 88 NKISKIHEKAFSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF 164 (332)
T ss_dssp SCCCEECGGGSTTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGS
T ss_pred CccCccCHhHhhCcCCCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCC
Confidence 99998888899999999999999999984 444443 899999999999997777789999999999999999863 6
Q ss_pred chhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCc
Q 037792 170 IPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNY 249 (558)
Q Consensus 170 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~ 249 (558)
.+..+..+ +|+.|++++|.+++.+.... ++|++|++++|.+++..+..+.. +++|++|++++|.
T Consensus 165 ~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~-------------l~~L~~L~L~~N~ 228 (332)
T 2ft3_A 165 EPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLR-------------YSKLYRLGLGHNQ 228 (332)
T ss_dssp CTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTT-------------CTTCSCCBCCSSC
T ss_pred CcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcC-------------CCCCCEEECCCCc
Confidence 67778877 99999999999998665543 78999999999998776666664 4566677777788
Q ss_pred CCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCcc
Q 037792 250 LQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGR 329 (558)
Q Consensus 250 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (558)
+++..+..+..+++|++|++++|+++ .+|..+..
T Consensus 229 l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~--------------------------------------------- 262 (332)
T 2ft3_A 229 IRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD--------------------------------------------- 262 (332)
T ss_dssp CCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG---------------------------------------------
T ss_pred CCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc---------------------------------------------
Confidence 88777788999999999999999997 66665544
Q ss_pred ccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccC------ccCCCeeeccCCcCC--ccchhhhhcc
Q 037792 330 MLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGD------LQNIHGLNLSHNFLS--GSIPESFSNL 401 (558)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~Ls~N~l~--~~~~~~~~~l 401 (558)
+++|+.|++++|.+++..+..|.. .+.|+.|++++|++. +..|..|..+
T Consensus 263 -----------------------l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l 319 (332)
T 2ft3_A 263 -----------------------LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319 (332)
T ss_dssp -----------------------CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTB
T ss_pred -----------------------CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccccc
Confidence 788999999999999777777755 367899999999987 6778889999
Q ss_pred ccCCeEeCCCCc
Q 037792 402 KMIESLDLSHNK 413 (558)
Q Consensus 402 ~~L~~L~Ls~N~ 413 (558)
++|+.+++++|+
T Consensus 320 ~~L~~l~l~~n~ 331 (332)
T 2ft3_A 320 TDRLAIQFGNYK 331 (332)
T ss_dssp CCSTTEEC----
T ss_pred chhhhhhccccc
Confidence 999999999885
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=6.4e-31 Score=260.11 Aligned_cols=289 Identities=19% Similarity=0.238 Sum_probs=191.1
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeec
Q 037792 34 KLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYL 113 (558)
Q Consensus 34 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 113 (558)
+++.++++++.++ .+|..+. +++++|++++|.++ .++...+.++++|++|++++|.+.+..+..+.++++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 5566666666555 3343332 45666666666665 344433455666666666666666555566666666666666
Q ss_pred cccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcc--cchhhhcCCcccceeeccccccc
Q 037792 114 YNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEG--NIPVQFNNLASLQILNISENNLS 191 (558)
Q Consensus 114 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~i~ 191 (558)
++|.++. .|..+. ++|++|++++|.+++..+..+.++++|+.|++++|.+.. ..+..+..+++|+.|++++|.++
T Consensus 108 s~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 6666653 333322 567777777777776666667777777777777777642 45566777777777777777777
Q ss_pred cccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEccc
Q 037792 192 GSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISH 271 (558)
Q Consensus 192 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 271 (558)
..+.... ++|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..+..+++|++|++++
T Consensus 185 ~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l-------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 249 (330)
T 1xku_A 185 TIPQGLP--PSLTELHLDGNKITKVDAASLKGL-------------NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249 (330)
T ss_dssp SCCSSCC--TTCSEEECTTSCCCEECTGGGTTC-------------TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS
T ss_pred cCCcccc--ccCCEEECCCCcCCccCHHHhcCC-------------CCCCEEECCCCcCceeChhhccCCCCCCEEECCC
Confidence 6554433 678888888888876666666543 4555566666677666666777888888888888
Q ss_pred CcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccch
Q 037792 272 NRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGD 351 (558)
Q Consensus 272 n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (558)
|+++ .+|..+..
T Consensus 250 N~l~-~lp~~l~~------------------------------------------------------------------- 261 (330)
T 1xku_A 250 NKLV-KVPGGLAD------------------------------------------------------------------- 261 (330)
T ss_dssp SCCS-SCCTTTTT-------------------------------------------------------------------
T ss_pred CcCc-cCChhhcc-------------------------------------------------------------------
Confidence 8876 55554433
Q ss_pred hhcccCEEEccCCCCCCCCCccccC------ccCCCeeeccCCcCCc--cchhhhhccccCCeEeCCCCc
Q 037792 352 ILELMAGLDLSNNELTGDIPSEIGD------LQNIHGLNLSHNFLSG--SIPESFSNLKMIESLDLSHNK 413 (558)
Q Consensus 352 ~l~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~ 413 (558)
+++|++|++++|.+++..+..|.. .+.++.|++++|++.. ..|..|..+.+++.+++++|+
T Consensus 262 -l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 262 -HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp -CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred -CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 677888888888888666666643 3778899999998864 567788999999999999885
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=9.7e-32 Score=263.41 Aligned_cols=253 Identities=29% Similarity=0.459 Sum_probs=154.8
Q ss_pred CCCEEEccCCccCc--cCchhhcCCCccCeeeccc-cccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEE
Q 037792 83 SLEWLDLSNNNFVG--QIFPNYMNLTRLWALYLYN-NNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQIL 159 (558)
Q Consensus 83 ~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 159 (558)
++++|++++|.+.+ .+|..+.++++|++|++++ |.+.+..|..+.++++|++|++++|.+++..|..+.++++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 45555555555554 4455555555555555553 55554455555555555555555555554455555555555555
Q ss_pred EcccCcCcccchhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCC
Q 037792 160 SMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSN 239 (558)
Q Consensus 160 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 239 (558)
++++|.+.+..|..+..+ ++|++|++++|.+++.+|..+..++ ++
T Consensus 131 ~Ls~N~l~~~~p~~~~~l-----------------------~~L~~L~L~~N~l~~~~p~~l~~l~------------~~ 175 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSL-----------------------PNLVGITFDGNRISGAIPDSYGSFS------------KL 175 (313)
T ss_dssp ECCSSEEESCCCGGGGGC-----------------------TTCCEEECCSSCCEEECCGGGGCCC------------TT
T ss_pred eCCCCccCCcCChHHhcC-----------------------CCCCeEECcCCcccCcCCHHHhhhh------------hc
Confidence 555555544444444444 4555555555555444444444321 13
Q ss_pred cCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhh
Q 037792 240 LRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTV 319 (558)
Q Consensus 240 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (558)
|++|++++|.+++..|..+..++ |+.|++++|++++..|..+..
T Consensus 176 L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~----------------------------------- 219 (313)
T 1ogq_A 176 FTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGS----------------------------------- 219 (313)
T ss_dssp CCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCT-----------------------------------
T ss_pred CcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhc-----------------------------------
Confidence 44444555555555555555555 666666666665544444333
Q ss_pred hhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhh
Q 037792 320 ELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFS 399 (558)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 399 (558)
+++|+.|++++|.+++..+. +..+++|++|++++|.+++.+|..+.
T Consensus 220 ---------------------------------l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~ 265 (313)
T 1ogq_A 220 ---------------------------------DKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLT 265 (313)
T ss_dssp ---------------------------------TSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGG
T ss_pred ---------------------------------CCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHh
Confidence 55666777777776655444 66778888888888888888888888
Q ss_pred ccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCC
Q 037792 400 NLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGP 441 (558)
Q Consensus 400 ~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~ 441 (558)
.+++|++|++++|++++.+|.. ..+++|+.+++++|+..+.
T Consensus 266 ~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 266 QLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp GCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred cCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 8888888888888888888776 7788888888888885443
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-32 Score=281.42 Aligned_cols=358 Identities=19% Similarity=0.146 Sum_probs=250.3
Q ss_pred CCcCCCccEEEccCCcCCCC----CChhhhhcCCCccEEEccCCcCCCCCchhhh-CCC----CCCEEEcccccCCc---
Q 037792 4 TSAQHGLHSLDISRNSFSGK----LPQNMGIVLPKLVYMNISKNSFEGNIPSSIG-KMQ----GLRLLDVSSNNFAG--- 71 (558)
Q Consensus 4 ~~~~~~L~~L~l~~n~l~~~----~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~----~L~~L~L~~n~l~~--- 71 (558)
+..+++|++|++++|.+++. ++..+. .+++|++|++++|.+++..+..+. .++ +|++|++++|.+++
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 102 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALR-VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHH-TCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHH-hCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence 45788999999999998732 343333 489999999999999865454443 455 69999999999984
Q ss_pred -cchHHHHhcCCCCCEEEccCCccCccCchhhc-----CCCccCeeecccccccccc----chhhcCCCCCCEEEccCCc
Q 037792 72 -ELSQSLVINCFSLEWLDLSNNNFVGQIFPNYM-----NLTRLWALYLYNNNFSGKI----KDGLLRSTELMVLDISNNR 141 (558)
Q Consensus 72 -~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~-----~l~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~L~~n~ 141 (558)
.++ ..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.++... +..+..+++|++|++++|.
T Consensus 103 ~~l~-~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 103 GVLS-STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp HHHH-HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHH-HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence 234 3457899999999999998764444333 3668999999999998643 5566778999999999999
Q ss_pred CCCCCccccc-----CCCCCcEEEcccCcCccc----chhhhcCCcccceeecccccccccc-----CCCc-CCCCccEE
Q 037792 142 LSGHIPSWMG-----NFSTLQILSMSKNLLEGN----IPVQFNNLASLQILNISENNLSGSM-----ISTL-NLSSVEHL 206 (558)
Q Consensus 142 l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~i~~~~-----~~~~-~~~~L~~L 206 (558)
+....+..+. ..++|+.|++++|.+.+. ++..+..+++|++|++++|.+.+.. .... .+++|++|
T Consensus 182 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L 261 (461)
T 1z7x_W 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL 261 (461)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEE
Confidence 8754444443 366999999999999864 4677888999999999999987643 1222 47899999
Q ss_pred EccCCcCccc----chhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhcc-----CCCCCCEEEcccCcCccc
Q 037792 207 YLQNNALGGS----IPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLC-----HLRKLGIMDISHNRLNGS 277 (558)
Q Consensus 207 ~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~ 277 (558)
++++|.+++. ++..+..+++ |++|++++|.+++..+..+. ..++|++|++++|.+++.
T Consensus 262 ~L~~n~l~~~~~~~l~~~l~~~~~-------------L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 328 (461)
T 1z7x_W 262 WIWECGITAKGCGDLCRVLRAKES-------------LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA 328 (461)
T ss_dssp ECTTSCCCHHHHHHHHHHHHHCTT-------------CCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred ECcCCCCCHHHHHHHHHHHhhCCC-------------cceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH
Confidence 9999999864 4556665554 45555555666543333332 235778888888777643
Q ss_pred cChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccC
Q 037792 278 IPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMA 357 (558)
Q Consensus 278 ~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 357 (558)
....+...- ..+++|+
T Consensus 329 ~~~~l~~~l----------------------------------------------------------------~~~~~L~ 344 (461)
T 1z7x_W 329 CCSHFSSVL----------------------------------------------------------------AQNRFLL 344 (461)
T ss_dssp GHHHHHHHH----------------------------------------------------------------HHCSSCC
T ss_pred HHHHHHHHH----------------------------------------------------------------hhCCCcc
Confidence 221111100 0046777
Q ss_pred EEEccCCCCCCCCCccccC-----ccCCCeeeccCCcCCc----cchhhhhccccCCeEeCCCCcccccCchhcc-----
Q 037792 358 GLDLSNNELTGDIPSEIGD-----LQNIHGLNLSHNFLSG----SIPESFSNLKMIESLDLSHNKLNGQIPPQLT----- 423 (558)
Q Consensus 358 ~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~----- 423 (558)
.|++++|.+++..+..+.. .++|++|++++|.+++ .+|..+..+++|++|++++|+++......+.
T Consensus 345 ~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~ 424 (461)
T 1z7x_W 345 ELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 424 (461)
T ss_dssp EEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTS
T ss_pred EEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhcc
Confidence 7888888776544433332 5678888888888875 5677777788888888888887743222221
Q ss_pred cCCCCCEEecCCCCCcC
Q 037792 424 ELHSLSTFDVSYNNLSG 440 (558)
Q Consensus 424 ~l~~L~~L~l~~N~l~~ 440 (558)
....|+.|++.++.+..
T Consensus 425 ~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 425 PGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp TTCCCCEEECTTCCCCH
T ss_pred CCcchhheeecccccCH
Confidence 23457777777766653
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-29 Score=243.57 Aligned_cols=272 Identities=20% Similarity=0.238 Sum_probs=187.5
Q ss_pred eeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCccc--chhhhcCCcccceeeccc
Q 037792 110 ALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGN--IPVQFNNLASLQILNISE 187 (558)
Q Consensus 110 ~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~ 187 (558)
.++.+++.++. .|..+ .++|++|++++|.++...+..|.++++|++|++++|.+... .+..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCccc-CCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 44555555542 23322 24666666666666644444556666677777766666522 244555667777777777
Q ss_pred cccccccCCCcCCCCccEEEccCCcCcccch-hhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCE
Q 037792 188 NNLSGSMISTLNLSSVEHLYLQNNALGGSIP-NTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGI 266 (558)
Q Consensus 188 n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 266 (558)
|.+...+..+..+++|++|++++|.+++..+ ..+.. +++|++|++++|.+.+..+..+..+++|++
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 154 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS-------------LRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTT-------------CTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred CccccChhhcCCCCCCCEEECCCCcccccccchhhhh-------------ccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence 7766555444466777777777777664333 23332 455666666667777677777888888888
Q ss_pred EEcccCcCcc-ccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeeccccc
Q 037792 267 MDISHNRLNG-SIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRY 345 (558)
Q Consensus 267 L~l~~n~l~~-~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (558)
|++++|.+++ ..|..+..
T Consensus 155 L~l~~n~l~~~~~~~~~~~------------------------------------------------------------- 173 (306)
T 2z66_A 155 LKMAGNSFQENFLPDIFTE------------------------------------------------------------- 173 (306)
T ss_dssp EECTTCEEGGGEECSCCTT-------------------------------------------------------------
T ss_pred EECCCCccccccchhHHhh-------------------------------------------------------------
Confidence 8888888764 34443332
Q ss_pred ccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccC
Q 037792 346 ESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTEL 425 (558)
Q Consensus 346 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l 425 (558)
+++|+.|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..|..+..+
T Consensus 174 -------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 246 (306)
T 2z66_A 174 -------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246 (306)
T ss_dssp -------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred -------CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence 6788899999999987778889999999999999999998777788999999999999999998888888888
Q ss_pred C-CCCEEecCCCCCcCCCCCCc---ccCCCCcccccCCCCCCCC
Q 037792 426 H-SLSTFDVSYNNLSGPIPDKE---QFSTFDESSYRGNLFLCGP 465 (558)
Q Consensus 426 ~-~L~~L~l~~N~l~~~~p~~~---~~~~l~~~~~~~N~~~C~~ 465 (558)
+ +|++|++++|++++.++..+ ++.....+....+...|..
T Consensus 247 ~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~ 290 (306)
T 2z66_A 247 PSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECAT 290 (306)
T ss_dssp CTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEE
T ss_pred hccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCC
Confidence 5 89999999999998766422 2222333344445555543
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.1e-29 Score=247.33 Aligned_cols=281 Identities=20% Similarity=0.194 Sum_probs=175.9
Q ss_pred CCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCE
Q 037792 55 KMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMV 134 (558)
Q Consensus 55 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 134 (558)
.++.....+++++.++ .+|..+ .++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 3455556777777777 677644 357778888877777655556777777777777777777666666777777777
Q ss_pred EEccCCcCCCCCcccccCCCCCcEEEcccCcCcccch-hhhcCCcccceeecccc-ccccccCCCc-CCCCccEEEccCC
Q 037792 135 LDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIP-VQFNNLASLQILNISEN-NLSGSMISTL-NLSSVEHLYLQNN 211 (558)
Q Consensus 135 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n-~i~~~~~~~~-~~~~L~~L~l~~n 211 (558)
|++++|.+++..+..+.++++|++|++++|++.+..+ ..+..+++|++|++++| .+....+..+ .+++|++|++++|
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 7777777775544556667777777777776663332 35566666666666666 3444433333 4555555555555
Q ss_pred cCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccc
Q 037792 212 ALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVE 291 (558)
Q Consensus 212 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~ 291 (558)
.+.+..+..+.. +++|++|++++|.++......+..+++|+.|++++
T Consensus 185 ~l~~~~~~~l~~-------------l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~-------------------- 231 (353)
T 2z80_A 185 DLQSYEPKSLKS-------------IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD-------------------- 231 (353)
T ss_dssp TCCEECTTTTTT-------------CSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEES--------------------
T ss_pred CcCccCHHHHhc-------------cccCCeecCCCCccccchhhhhhhcccccEEECCC--------------------
Confidence 555444444432 22333333444444322222233344444555544
Q ss_pred cCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCC
Q 037792 292 NGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIP 371 (558)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 371 (558)
|.+++..+
T Consensus 232 ------------------------------------------------------------------------n~l~~~~~ 239 (353)
T 2z80_A 232 ------------------------------------------------------------------------TDLDTFHF 239 (353)
T ss_dssp ------------------------------------------------------------------------CBCTTCCC
T ss_pred ------------------------------------------------------------------------Cccccccc
Confidence 44443322
Q ss_pred ccc---cCccCCCeeeccCCcCCc----cchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCC
Q 037792 372 SEI---GDLQNIHGLNLSHNFLSG----SIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD 444 (558)
Q Consensus 372 ~~~---~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 444 (558)
..+ ...+.++.++++++.+++ .+|+.+..+++|++|++++|+++...+..|..+++|++|++++|+++|.+|.
T Consensus 240 ~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 240 SELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp C------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred cccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 222 224456666666666654 3677889999999999999999955555568999999999999999988875
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-29 Score=271.91 Aligned_cols=394 Identities=14% Similarity=0.078 Sum_probs=253.7
Q ss_pred CcCCCccEEEccCCcCC---CCCC-----------hhhhhcCCCccEEEccCCcCCCCCchhhhC-CC-CCCEEEccccc
Q 037792 5 SAQHGLHSLDISRNSFS---GKLP-----------QNMGIVLPKLVYMNISKNSFEGNIPSSIGK-MQ-GLRLLDVSSNN 68 (558)
Q Consensus 5 ~~~~~L~~L~l~~n~l~---~~~p-----------~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~-~L~~L~L~~n~ 68 (558)
..+++|++|+++++... +.+| ..+...+++|++|++++|.+++..+..+.. ++ +|++|++++|.
T Consensus 70 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~ 149 (592)
T 3ogk_B 70 RRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS 149 (592)
T ss_dssp HHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCE
T ss_pred HhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCC
Confidence 46778888888774321 1222 223335788899999888887666666655 33 48888888876
Q ss_pred -CCccchHHHHhcCCCCCEEEccCCccCcc----CchhhcCCCccCeeecccccccc----ccchhhcCCCCCCEEEccC
Q 037792 69 -FAGELSQSLVINCFSLEWLDLSNNNFVGQ----IFPNYMNLTRLWALYLYNNNFSG----KIKDGLLRSTELMVLDISN 139 (558)
Q Consensus 69 -l~~~~~~~~~~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~L~~ 139 (558)
++......+...+++|++|++++|.+.+. ++....++++|++|++++|.+++ ..+..+..+++|++|++++
T Consensus 150 ~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~ 229 (592)
T 3ogk_B 150 GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD 229 (592)
T ss_dssp EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSS
T ss_pred CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccC
Confidence 22112223345788888888888887654 33345678888888888888762 3344456778888888888
Q ss_pred CcCCCCCcccccCCCCCcEEEcccCcCc---ccchhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCccc
Q 037792 140 NRLSGHIPSWMGNFSTLQILSMSKNLLE---GNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGS 216 (558)
Q Consensus 140 n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~ 216 (558)
|.+.+ .+..+..+++|+.|+++..... ...+..+..+++|+.|.++++.....+.....+++|++|++++|.+++.
T Consensus 230 ~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~ 308 (592)
T 3ogk_B 230 FEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETE 308 (592)
T ss_dssp CBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHH
T ss_pred ccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHH
Confidence 88774 5677778888888888753322 1233445667788888877754443333333677888888888876544
Q ss_pred ch-hhhhCCCCCcEEEcCCC-----------CCCCcCEEEccC-----------CcCCCC-chhhccCCCCCCEEEcccC
Q 037792 217 IP-NTFFRGSALETLDLRIN-----------EHSNLRTLLLRG-----------NYLQGP-IPHQLCHLRKLGIMDISHN 272 (558)
Q Consensus 217 ~~-~~~~~~~~L~~L~l~~n-----------~~~~L~~L~l~~-----------n~l~~~-~~~~~~~l~~L~~L~l~~n 272 (558)
.. ..+..+++|+.|+++.+ .+++|++|++++ +.+++. ++.....+++|++|+++.|
T Consensus 309 ~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 388 (592)
T 3ogk_B 309 DHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS 388 (592)
T ss_dssp HHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES
T ss_pred HHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecC
Confidence 33 34567788888888643 367788888883 455533 2233455788888888878
Q ss_pred cCccccChhhhc-cc---ccccc----cCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccc
Q 037792 273 RLNGSIPACITN-ML---FSRVE----NGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNR 344 (558)
Q Consensus 273 ~l~~~~p~~~~~-l~---~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (558)
.+++..+..+.. ++ ...+. .+.+.+.+... ..
T Consensus 389 ~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~--------------~~-------------------------- 428 (592)
T 3ogk_B 389 DITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN--------------GV-------------------------- 428 (592)
T ss_dssp CCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH--------------HH--------------------------
T ss_pred CccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH--------------HH--------------------------
Confidence 777655544433 11 11110 00000000000 00
Q ss_pred cccccchhhcccCEEEccCCC--CCCCCCcccc-CccCCCeeeccCCcCCcc-chhhhhccccCCeEeCCCCccccc-Cc
Q 037792 345 YESYKGDILELMAGLDLSNNE--LTGDIPSEIG-DLQNIHGLNLSHNFLSGS-IPESFSNLKMIESLDLSHNKLNGQ-IP 419 (558)
Q Consensus 345 ~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~i~~~-~~ 419 (558)
..+ ...+++|+.|++++|. +++..+..+. .+++|++|++++|++++. ++..+.++++|++|++++|.++.. ++
T Consensus 429 -~~~-~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 506 (592)
T 3ogk_B 429 -RSL-LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIA 506 (592)
T ss_dssp -HHH-HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHH
T ss_pred -HHH-HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHH
Confidence 000 0116889999997654 5544444443 488999999999999863 455568889999999999998754 44
Q ss_pred hhcccCCCCCEEecCCCCCcCC
Q 037792 420 PQLTELHSLSTFDVSYNNLSGP 441 (558)
Q Consensus 420 ~~l~~l~~L~~L~l~~N~l~~~ 441 (558)
.....+++|++|++++|+++..
T Consensus 507 ~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 507 AAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHhcCccCeeECcCCcCCHH
Confidence 4556789999999999998753
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=246.10 Aligned_cols=259 Identities=19% Similarity=0.185 Sum_probs=205.2
Q ss_pred cCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCC
Q 037792 6 AQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLE 85 (558)
Q Consensus 6 ~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 85 (558)
.|+.....+++++.++ .+|..++ ++|++|++++|.+++..+..+.++++|++|++++|.++ .++...+.++++|+
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLE 103 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCC
T ss_pred CCCCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCC
Confidence 4666777899999998 8998764 58999999999999777778999999999999999998 55555567889999
Q ss_pred EEEccCCccCccCchhhcCCCccCeeeccccccccccc-hhhcCCCCCCEEEccCC-cCCCCCcccccCCCCCcEEEccc
Q 037792 86 WLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIK-DGLLRSTELMVLDISNN-RLSGHIPSWMGNFSTLQILSMSK 163 (558)
Q Consensus 86 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~ 163 (558)
+|++++|.+++..+..+.++++|++|++++|.++.... ..+..+++|++|++++| .+....+..+.++++|+.|++++
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence 99999999987666668899999999999999885544 47888999999999998 46666677888899999999999
Q ss_pred CcCcccchhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCE
Q 037792 164 NLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRT 242 (558)
Q Consensus 164 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~ 242 (558)
|.+.+..|..+..+++|++|++++|.+...+...+ .+++|++|++++|.+++..+..+.... ..+.++.
T Consensus 184 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~----------~~~~l~~ 253 (353)
T 2z80_A 184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE----------TNSLIKK 253 (353)
T ss_dssp TTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC----------------CCCCCCE
T ss_pred CCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccccc----------ccchhhc
Confidence 99988888889999999999999998876655444 578999999999988865443332211 2355666
Q ss_pred EEccCCcCCC----CchhhccCCCCCCEEEcccCcCccccCh
Q 037792 243 LLLRGNYLQG----PIPHQLCHLRKLGIMDISHNRLNGSIPA 280 (558)
Q Consensus 243 L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 280 (558)
++++++.+.+ .+|..+..+++|++|++++|+++ .+|.
T Consensus 254 l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~ 294 (353)
T 2z80_A 254 FTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPD 294 (353)
T ss_dssp EEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCT
T ss_pred cccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCH
Confidence 7777776664 35777888889999999999887 4443
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=244.80 Aligned_cols=252 Identities=24% Similarity=0.296 Sum_probs=208.6
Q ss_pred ccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeecc
Q 037792 107 RLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNIS 186 (558)
Q Consensus 107 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 186 (558)
..+.++.++..++ .+|..+ .++++.|++++|.++...+..|.++++|+.|++++|.+.+..+..|.++++|++|+++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 3567788888777 455544 3789999999999998888899999999999999999998888899999999999999
Q ss_pred ccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccC-CcCCCCchhhccCCCCC
Q 037792 187 ENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRG-NYLQGPIPHQLCHLRKL 264 (558)
Q Consensus 187 ~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L 264 (558)
+|.++..+...+ .+++|++|++++|.+....+..+..+++|+ +|++++ +.+....+..+..+++|
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~-------------~L~l~~~~~l~~i~~~~~~~l~~L 187 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR-------------RLDLGELKRLSYISEGAFEGLSNL 187 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCC-------------EEECCCCTTCCEECTTTTTTCSSC
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccC-------------EeCCCCCCCcceeCcchhhccccc
Confidence 999998887666 889999999999999876666776655554 445554 34444445578889999
Q ss_pred CEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccc
Q 037792 265 GIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNR 344 (558)
Q Consensus 265 ~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (558)
++|++++|+++ .+|. +..
T Consensus 188 ~~L~L~~n~l~-~~~~-~~~------------------------------------------------------------ 205 (440)
T 3zyj_A 188 RYLNLAMCNLR-EIPN-LTP------------------------------------------------------------ 205 (440)
T ss_dssp CEEECTTSCCS-SCCC-CTT------------------------------------------------------------
T ss_pred CeecCCCCcCc-cccc-cCC------------------------------------------------------------
Confidence 99999999886 2231 111
Q ss_pred cccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhccc
Q 037792 345 YESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTE 424 (558)
Q Consensus 345 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~ 424 (558)
+++|+.|++++|.+++..|..|..+++|++|++++|.+++..+..|.++++|+.|+|++|+++...+..|..
T Consensus 206 --------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 277 (440)
T 3zyj_A 206 --------LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277 (440)
T ss_dssp --------CSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred --------CcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence 678999999999999888889999999999999999999888888999999999999999999888888889
Q ss_pred CCCCCEEecCCCCCcCCCCC
Q 037792 425 LHSLSTFDVSYNNLSGPIPD 444 (558)
Q Consensus 425 l~~L~~L~l~~N~l~~~~p~ 444 (558)
+++|+.|++++|++.|.+..
T Consensus 278 l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 278 LHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp CTTCCEEECCSSCEECSSTT
T ss_pred ccCCCEEEcCCCCccCCCCc
Confidence 99999999999999987765
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.6e-27 Score=244.54 Aligned_cols=252 Identities=20% Similarity=0.240 Sum_probs=206.3
Q ss_pred ccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeecc
Q 037792 107 RLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNIS 186 (558)
Q Consensus 107 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 186 (558)
..+.++.++..++. +|..+ .++++.|++++|.+++..+..|.++++|+.|++++|.+.+..+..|.++++|+.|+++
T Consensus 55 ~~~~v~c~~~~l~~-iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLSE-VPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcCc-cCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 34677777777763 45544 3689999999999998888899999999999999999998888889999999999999
Q ss_pred ccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccC-CcCCCCchhhccCCCCC
Q 037792 187 ENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRG-NYLQGPIPHQLCHLRKL 264 (558)
Q Consensus 187 ~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L 264 (558)
+|.++..+...+ .+++|++|++++|.++...+..+..+++|+.| ++++ +.+....+..+..+++|
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L-------------~l~~~~~l~~i~~~~~~~l~~L 198 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL-------------DLGELKKLEYISEGAFEGLFNL 198 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEE-------------ECCCCTTCCEECTTTTTTCTTC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEE-------------eCCCCCCccccChhhccCCCCC
Confidence 999998887766 78999999999999986666667665555444 4444 34444445578889999
Q ss_pred CEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccc
Q 037792 265 GIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNR 344 (558)
Q Consensus 265 ~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (558)
++|++++|++++ +|. +..
T Consensus 199 ~~L~L~~n~l~~-~~~-~~~------------------------------------------------------------ 216 (452)
T 3zyi_A 199 KYLNLGMCNIKD-MPN-LTP------------------------------------------------------------ 216 (452)
T ss_dssp CEEECTTSCCSS-CCC-CTT------------------------------------------------------------
T ss_pred CEEECCCCcccc-ccc-ccc------------------------------------------------------------
Confidence 999999998863 221 111
Q ss_pred cccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhccc
Q 037792 345 YESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTE 424 (558)
Q Consensus 345 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~ 424 (558)
+++|+.|++++|.+++..|..|.++++|++|++++|.+++..+..|.++++|+.|+|++|+++...+..+..
T Consensus 217 --------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 288 (452)
T 3zyi_A 217 --------LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288 (452)
T ss_dssp --------CTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred --------cccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence 678999999999999888888999999999999999999888888999999999999999999888888888
Q ss_pred CCCCCEEecCCCCCcCCCCC
Q 037792 425 LHSLSTFDVSYNNLSGPIPD 444 (558)
Q Consensus 425 l~~L~~L~l~~N~l~~~~p~ 444 (558)
+++|+.|++++|++.|.+..
T Consensus 289 l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 289 LRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp CTTCCEEECCSSCEECSTTT
T ss_pred ccCCCEEEccCCCcCCCCCc
Confidence 99999999999999988775
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.5e-30 Score=273.30 Aligned_cols=400 Identities=12% Similarity=0.069 Sum_probs=276.5
Q ss_pred EEEccCCcCCCCCChhhhhcCCCccEEEccCCcCC---CCCch------------hhhCCCCCCEEEcccccCCccchHH
Q 037792 12 SLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFE---GNIPS------------SIGKMQGLRLLDVSSNNFAGELSQS 76 (558)
Q Consensus 12 ~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~---~~~~~------------~~~~l~~L~~L~L~~n~l~~~~~~~ 76 (558)
.+.+.++ .. ..|..++..+++|++|+++++... +..|. ....+++|++|++++|.+++..+..
T Consensus 54 ~l~~~~~-~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~ 131 (592)
T 3ogk_B 54 HVTMALC-YT-ATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDR 131 (592)
T ss_dssp EEEESCG-GG-SCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred EEEEeec-cc-cChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHH
Confidence 3444433 33 566777777999999999885421 12222 2237899999999999988655555
Q ss_pred HHhcCCC-CCEEEccCCcc-Cc-cCchhhcCCCccCeeeccccccccc----cchhhcCCCCCCEEEccCCcCCC----C
Q 037792 77 LVINCFS-LEWLDLSNNNF-VG-QIFPNYMNLTRLWALYLYNNNFSGK----IKDGLLRSTELMVLDISNNRLSG----H 145 (558)
Q Consensus 77 ~~~~l~~-L~~L~l~~n~i-~~-~~~~~~~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~----~ 145 (558)
+...+++ |++|++++|.. .. ..+....++++|++|++++|.+++. .+.....+++|++|++++|.+++ .
T Consensus 132 l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~ 211 (592)
T 3ogk_B 132 LAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKD 211 (592)
T ss_dssp HHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHH
T ss_pred HHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHH
Confidence 5333455 99999999862 21 1222345899999999999998755 33455678999999999999873 3
Q ss_pred CcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeecccccccc----ccCCCcCCCCccEEEccCCcCcccchhhh
Q 037792 146 IPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSG----SMISTLNLSSVEHLYLQNNALGGSIPNTF 221 (558)
Q Consensus 146 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 221 (558)
.+..+.++++|+.|++++|.+.+ .+..+..+++|++|+++...... .......+++|+.|+++++.. ..++..+
T Consensus 212 l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~ 289 (592)
T 3ogk_B 212 LETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILF 289 (592)
T ss_dssp HHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGG
T ss_pred HHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHH
Confidence 34456678999999999999884 67889999999999998643321 112222778999999998643 4677788
Q ss_pred hCCCCCcEEEcCCC------------CCCCcCEEEccCCcCCCCchhhccCCCCCCEEEccc-----------CcCcccc
Q 037792 222 FRGSALETLDLRIN------------EHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISH-----------NRLNGSI 278 (558)
Q Consensus 222 ~~~~~L~~L~l~~n------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-----------n~l~~~~ 278 (558)
..+++|+.|++++| .+++|++|+++++...+.++.....+++|++|++++ +.+++..
T Consensus 290 ~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~ 369 (592)
T 3ogk_B 290 PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG 369 (592)
T ss_dssp GGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHH
T ss_pred hhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHH
Confidence 88999999999998 478999999994332233445557789999999994 4554321
Q ss_pred Chhh-hcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeeccccccc----ccchhh
Q 037792 279 PACI-TNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYES----YKGDIL 353 (558)
Q Consensus 279 p~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l 353 (558)
...+ ..++.. ..+.. ..+.... .-+..+
T Consensus 370 ~~~l~~~~~~L----------------------------------------------~~L~l-~~~~l~~~~~~~l~~~~ 402 (592)
T 3ogk_B 370 LIALAQGCQEL----------------------------------------------EYMAV-YVSDITNESLESIGTYL 402 (592)
T ss_dssp HHHHHHHCTTC----------------------------------------------SEEEE-EESCCCHHHHHHHHHHC
T ss_pred HHHHHhhCccC----------------------------------------------eEEEe-ecCCccHHHHHHHHhhC
Confidence 1111 111100 00000 0000000 001126
Q ss_pred cccCEEEcc----CCCCCCC-----CCccccCccCCCeeeccCCc--CCccchhhhh-ccccCCeEeCCCCcccc-cCch
Q 037792 354 ELMAGLDLS----NNELTGD-----IPSEIGDLQNIHGLNLSHNF--LSGSIPESFS-NLKMIESLDLSHNKLNG-QIPP 420 (558)
Q Consensus 354 ~~L~~L~Ls----~n~l~~~-----~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~-~l~~L~~L~Ls~N~i~~-~~~~ 420 (558)
++|+.|+++ .|.+++. ++..+.++++|++|++++|. +++..+..+. .+++|++|++++|.+++ .++.
T Consensus 403 ~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 482 (592)
T 3ogk_B 403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLME 482 (592)
T ss_dssp CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHH
T ss_pred CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHH
Confidence 789999996 6677753 23346779999999998654 7766665554 48999999999999986 3455
Q ss_pred hcccCCCCCEEecCCCCCcCC-CCC-CcccCCCCcccccCCCCC
Q 037792 421 QLTELHSLSTFDVSYNNLSGP-IPD-KEQFSTFDESSYRGNLFL 462 (558)
Q Consensus 421 ~l~~l~~L~~L~l~~N~l~~~-~p~-~~~~~~l~~~~~~~N~~~ 462 (558)
.+..+++|++|++++|+++.. ++. ...+++++.+++++|...
T Consensus 483 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 483 FSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp HHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred HHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 668899999999999998643 222 345678899999998853
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-27 Score=243.94 Aligned_cols=245 Identities=23% Similarity=0.219 Sum_probs=126.0
Q ss_pred CEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccC
Q 037792 85 EWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKN 164 (558)
Q Consensus 85 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 164 (558)
+.++.++..++ .+|..+. ++++.|++++|.++...+..|.++++|++|++++|.+....+..|.++++|++|++++|
T Consensus 46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 44555554444 2333222 44555555555555555555555555555555555555555555555555555555555
Q ss_pred cCcccchhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCc-CcccchhhhhCCCCCcEEEcCCCCCCCcCE
Q 037792 165 LLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNA-LGGSIPNTFFRGSALETLDLRINEHSNLRT 242 (558)
Q Consensus 165 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~ 242 (558)
++++..+..|..+++|+.|++++|.+...+...+ .+++|++|++++|. +....+..+..+ ++|++
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l-------------~~L~~ 189 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL-------------SNLRY 189 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTC-------------SSCCE
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcc-------------cccCe
Confidence 5554444455555555555555555555544444 55555555555532 222222233322 33333
Q ss_pred EEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhh
Q 037792 243 LLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELL 322 (558)
Q Consensus 243 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (558)
|++++|.++. +| .+..+++|+.|++++|++++..|..|.+
T Consensus 190 L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------------------------------------- 229 (440)
T 3zyj_A 190 LNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQG-------------------------------------- 229 (440)
T ss_dssp EECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTT--------------------------------------
T ss_pred ecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhcc--------------------------------------
Confidence 3333344432 22 2445555555555555555443433332
Q ss_pred ccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccc
Q 037792 323 LDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLK 402 (558)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 402 (558)
+++|+.|++++|.+++..+..|..+++|++|+|++|++++..++.|..++
T Consensus 230 ------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 279 (440)
T 3zyj_A 230 ------------------------------LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH 279 (440)
T ss_dssp ------------------------------CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCT
T ss_pred ------------------------------CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcccc
Confidence 44555555555555555555555555555555555555555555555555
Q ss_pred cCCeEeCCCCccc
Q 037792 403 MIESLDLSHNKLN 415 (558)
Q Consensus 403 ~L~~L~Ls~N~i~ 415 (558)
+|+.|+|++|.+.
T Consensus 280 ~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 280 HLERIHLHHNPWN 292 (440)
T ss_dssp TCCEEECCSSCEE
T ss_pred CCCEEEcCCCCcc
Confidence 5555555555554
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-27 Score=244.80 Aligned_cols=246 Identities=21% Similarity=0.198 Sum_probs=136.4
Q ss_pred CCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEccc
Q 037792 84 LEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSK 163 (558)
Q Consensus 84 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 163 (558)
.+.++.++..++. +|..+. ++++.|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++
T Consensus 56 ~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 3455555555542 333222 4566666666666655555666666666666666666655555666666666666666
Q ss_pred CcCcccchhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCc-CcccchhhhhCCCCCcEEEcCCCCCCCcC
Q 037792 164 NLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNA-LGGSIPNTFFRGSALETLDLRINEHSNLR 241 (558)
Q Consensus 164 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~~~~L~ 241 (558)
|.+....+..|..+++|++|++++|.+...+...+ .+++|++|++++|. +....+..+.. +++|+
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~-------------l~~L~ 199 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG-------------LFNLK 199 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT-------------CTTCC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccC-------------CCCCC
Confidence 66665555556666666666666666665555444 55666666666532 32222223333 23334
Q ss_pred EEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhh
Q 037792 242 TLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVEL 321 (558)
Q Consensus 242 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (558)
+|++++|.+++. | .+..+++|+.|++++|++++..|..+.+
T Consensus 200 ~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------------------------- 240 (452)
T 3zyi_A 200 YLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHG------------------------------------- 240 (452)
T ss_dssp EEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTT-------------------------------------
T ss_pred EEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccC-------------------------------------
Confidence 444444444422 2 3555566666666666665444444433
Q ss_pred hccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhcc
Q 037792 322 LLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNL 401 (558)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 401 (558)
+++|+.|++++|.+++..+..|..+++|++|+|++|++++..++.|..+
T Consensus 241 -------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 241 -------------------------------LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp -------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred -------------------------------ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 4556666666666665555566666666666666666665555555666
Q ss_pred ccCCeEeCCCCccc
Q 037792 402 KMIESLDLSHNKLN 415 (558)
Q Consensus 402 ~~L~~L~Ls~N~i~ 415 (558)
++|+.|+|++|.+.
T Consensus 290 ~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 290 RYLVELHLHHNPWN 303 (452)
T ss_dssp TTCCEEECCSSCEE
T ss_pred cCCCEEEccCCCcC
Confidence 66666666666554
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.6e-28 Score=234.99 Aligned_cols=150 Identities=21% Similarity=0.239 Sum_probs=72.8
Q ss_pred cEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCcc--CchhhcCCCccCeeec
Q 037792 36 VYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQ--IFPNYMNLTRLWALYL 113 (558)
Q Consensus 36 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~l 113 (558)
+.++.+++.++ .+|..+. ++|++|++++|.++ .+|..++.++++|++|++++|.+... .+..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 35566665555 3343322 45666666666665 55555455566666666666655422 1344445555555555
Q ss_pred cccccccccchhhcCCCCCCEEEccCCcCCCCCc-ccccCCCCCcEEEcccCcCcccchhhhcCCcccceeecccccc
Q 037792 114 YNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIP-SWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNL 190 (558)
Q Consensus 114 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i 190 (558)
++|.+.. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 86 s~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 86 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp CSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred CCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc
Confidence 5555542 33334445555555555555443322 2344444444444444444433333344444444444444433
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-27 Score=230.76 Aligned_cols=231 Identities=21% Similarity=0.211 Sum_probs=145.1
Q ss_pred CCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCc-CcccchhhhhCCCCCcEEE
Q 037792 154 STLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNA-LGGSIPNTFFRGSALETLD 231 (558)
Q Consensus 154 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~ 231 (558)
++++.|++++|.+.+..+..|..+++|++|++++|.+++..+..+ .+++|++|++++|. +....+..+..
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~-------- 103 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG-------- 103 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTT--------
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcC--------
Confidence 345555555555554444445555555555555555554433333 45555555555554 44333444433
Q ss_pred cCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhccccccc
Q 037792 232 LRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYV 311 (558)
Q Consensus 232 l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (558)
+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..
T Consensus 104 -----l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------------------- 151 (285)
T 1ozn_A 104 -----LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD--------------------------- 151 (285)
T ss_dssp -----CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT---------------------------
T ss_pred -----CcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc---------------------------
Confidence 334445555555555555666667777777777777766433333332
Q ss_pred CcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCC
Q 037792 312 SNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLS 391 (558)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 391 (558)
+++|+.|++++|.+++..+..+..+++|++|++++|.++
T Consensus 152 -----------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 152 -----------------------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp -----------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred -----------------------------------------CCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 566777777777777666666777888888888888888
Q ss_pred ccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCCCcccCCCCcccccCCCCCCCC
Q 037792 392 GSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGP 465 (558)
Q Consensus 392 ~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~N~~~C~~ 465 (558)
+..|..|..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+.++..+...+++......+...|..
T Consensus 191 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~ 264 (285)
T 1ozn_A 191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSL 264 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEE
T ss_pred ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCC
Confidence 77788888888888888888888877777788888888888888888877665444444555555556655543
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-27 Score=228.69 Aligned_cols=263 Identities=19% Similarity=0.151 Sum_probs=212.2
Q ss_pred cEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEcc
Q 037792 11 HSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLS 90 (558)
Q Consensus 11 ~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~ 90 (558)
++++.+++.++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|.++ .++...+..+++|++|+++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCC
Confidence 68999999998 898765 469999999999999887788999999999999999998 5544455889999999999
Q ss_pred CCc-cCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCccc
Q 037792 91 NNN-FVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGN 169 (558)
Q Consensus 91 ~n~-i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (558)
+|. +....+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|+.|++++|++.+.
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence 997 7776688899999999999999999988888899999999999999999987777899999999999999999977
Q ss_pred chhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCC
Q 037792 170 IPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGN 248 (558)
Q Consensus 170 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n 248 (558)
.+..+..+++|+.|++++|.+++..+..+ .+++|++|++++|.+++..+..+..+++|+.|++ ++|
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l-------------~~N 235 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRL-------------NDN 235 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEEC-------------CSS
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEec-------------cCC
Confidence 77779999999999999999998866666 8899999999999999877777876655555554 455
Q ss_pred cCCCCchhhccCCCCCCEEEcccCcCccccChhhhccccccccc
Q 037792 249 YLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVEN 292 (558)
Q Consensus 249 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~ 292 (558)
.+....+.. .-...++.+..+.+.+....|..+.......+..
T Consensus 236 ~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~ 278 (285)
T 1ozn_A 236 PWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAA 278 (285)
T ss_dssp CEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCG
T ss_pred CccCCCCcH-HHHHHHHhcccccCccccCCchHhCCcChhhcCH
Confidence 554322210 0011233344566677667777666554444433
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.2e-27 Score=230.59 Aligned_cols=233 Identities=16% Similarity=0.229 Sum_probs=126.4
Q ss_pred CCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEE
Q 037792 8 HGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWL 87 (558)
Q Consensus 8 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 87 (558)
.+++.|++++|.++ .+|..++. +++|++|++++|.++ .+|..++++++|++|++++|.++ .+|..+ ..+++|++|
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~-l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l-~~l~~L~~L 155 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFR-LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASI-ASLNRLREL 155 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGG-GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGG-GGCTTCCEE
T ss_pred cceeEEEccCCCch-hcChhhhh-CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHH-hcCcCCCEE
Confidence 45566666666665 56655554 566666666666665 55555666666666666666665 555443 455666666
Q ss_pred EccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCc
Q 037792 88 DLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLE 167 (558)
Q Consensus 88 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (558)
++++|.+.+..|..+... .....+.++++|++|++++|.++ .+|..+..+++|++|++++|.+.
T Consensus 156 ~L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred ECCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 666655554444443320 00011223555555555555555 44555555555555555555555
Q ss_pred ccchhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEcc
Q 037792 168 GNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLR 246 (558)
Q Consensus 168 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~ 246 (558)
+ +|..+..+++|+.|++++|.+.+..+..+ .+++|++|++++|.+.+.+|..+.. +++|++|+++
T Consensus 220 ~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~-------------l~~L~~L~L~ 285 (328)
T 4fcg_A 220 A-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR-------------LTQLEKLDLR 285 (328)
T ss_dssp C-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGG-------------CTTCCEEECT
T ss_pred c-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhc-------------CCCCCEEeCC
Confidence 2 33345555555555555555554444333 5556666666666555555555543 2344444555
Q ss_pred CCcCCCCchhhccCCCCCCEEEcccCcCc
Q 037792 247 GNYLQGPIPHQLCHLRKLGIMDISHNRLN 275 (558)
Q Consensus 247 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 275 (558)
+|.+.+.+|..+..+++|+.+++..+.+.
T Consensus 286 ~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 286 GCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 55555566666666666666666655443
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-26 Score=228.00 Aligned_cols=235 Identities=21% Similarity=0.272 Sum_probs=164.1
Q ss_pred CCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceee
Q 037792 105 LTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILN 184 (558)
Q Consensus 105 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 184 (558)
.++++.|++++|.++ .+|..+.++++|++|++++|.++ .+|..++.+++|++|++++|.+. .+|..+..+++|+.|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 345566666666655 34444555566666666666655 55555555666666666666555 4455555555555555
Q ss_pred ccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCC
Q 037792 185 ISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKL 264 (558)
Q Consensus 185 L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 264 (558)
+++|.+.+ .+|..+........+ ..+++|++|++++|.++ .+|..+..+++|
T Consensus 157 L~~n~~~~-----------------------~~p~~~~~~~~~~~~----~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L 208 (328)
T 4fcg_A 157 IRACPELT-----------------------ELPEPLASTDASGEH----QGLVNLQSLRLEWTGIR-SLPASIANLQNL 208 (328)
T ss_dssp EEEETTCC-----------------------CCCSCSEEEC-CCCE----EESTTCCEEEEEEECCC-CCCGGGGGCTTC
T ss_pred CCCCCCcc-----------------------ccChhHhhccchhhh----ccCCCCCEEECcCCCcC-cchHhhcCCCCC
Confidence 55554433 333222110000000 02566777777778877 667778888999
Q ss_pred CEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccc
Q 037792 265 GIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNR 344 (558)
Q Consensus 265 ~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (558)
++|++++|++++ +|..+..
T Consensus 209 ~~L~L~~N~l~~-l~~~l~~------------------------------------------------------------ 227 (328)
T 4fcg_A 209 KSLKIRNSPLSA-LGPAIHH------------------------------------------------------------ 227 (328)
T ss_dssp CEEEEESSCCCC-CCGGGGG------------------------------------------------------------
T ss_pred CEEEccCCCCCc-Cchhhcc------------------------------------------------------------
Confidence 999999998873 4444443
Q ss_pred cccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhccc
Q 037792 345 YESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTE 424 (558)
Q Consensus 345 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~ 424 (558)
+++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+..
T Consensus 228 --------l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~ 299 (328)
T 4fcg_A 228 --------LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299 (328)
T ss_dssp --------CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG
T ss_pred --------CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh
Confidence 678899999999988888989999999999999999988899989999999999999999999899999999
Q ss_pred CCCCCEEecCCCCCc
Q 037792 425 LHSLSTFDVSYNNLS 439 (558)
Q Consensus 425 l~~L~~L~l~~N~l~ 439 (558)
+++|+.+++..|.+.
T Consensus 300 L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 300 LPANCIILVPPHLQA 314 (328)
T ss_dssp SCTTCEEECCGGGSC
T ss_pred ccCceEEeCCHHHHH
Confidence 999999999877665
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=237.93 Aligned_cols=68 Identities=26% Similarity=0.351 Sum_probs=41.0
Q ss_pred hcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccC
Q 037792 353 LELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTEL 425 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l 425 (558)
+++|+.|++++|.++ .+|. .+++|++|+|++|.++ .+|..+.++++|+.|+|++|.+++..|..+..+
T Consensus 240 l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 240 PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 345666666666666 3333 4556666666666666 445566666666666666666666655555443
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.2e-28 Score=258.02 Aligned_cols=389 Identities=14% Similarity=0.073 Sum_probs=233.6
Q ss_pred CcCCCccEEEccCCcCCCC---CC-----------hhhhhcCCCccEEEccCCcCCCCCchhhh-CCCCCCEEEcccc-c
Q 037792 5 SAQHGLHSLDISRNSFSGK---LP-----------QNMGIVLPKLVYMNISKNSFEGNIPSSIG-KMQGLRLLDVSSN-N 68 (558)
Q Consensus 5 ~~~~~L~~L~l~~n~l~~~---~p-----------~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n-~ 68 (558)
..+++|++|+++++..... .| ..+...+++|++|++++|.+++..+..+. .+++|++|++++| .
T Consensus 63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~ 142 (594)
T 2p1m_B 63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG 142 (594)
T ss_dssp HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence 3567788888887652211 11 12334577888888888887766666665 6788888888887 4
Q ss_pred CCccchHHHHhcCCCCCEEEccCCccCccCchhhc----CCCccCeeeccccc--cccc-cchhhcCCCCCCEEEccCCc
Q 037792 69 FAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYM----NLTRLWALYLYNNN--FSGK-IKDGLLRSTELMVLDISNNR 141 (558)
Q Consensus 69 l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~----~l~~L~~L~l~~n~--i~~~-~~~~~~~l~~L~~L~L~~n~ 141 (558)
+++.....+..++++|++|++++|.+++..+..+. .+++|++|++++|. +... .......+++|++|++++|.
T Consensus 143 ~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~ 222 (594)
T 2p1m_B 143 FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV 222 (594)
T ss_dssp EEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTS
T ss_pred CCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCC
Confidence 44333344556788888888888887654444333 56688888888876 2211 12223446888888888873
Q ss_pred CCCCCcccccCCCCCcEEEcccCc-------CcccchhhhcCCccccee-eccccccccccCCCcCCCCccEEEccCCcC
Q 037792 142 LSGHIPSWMGNFSTLQILSMSKNL-------LEGNIPVQFNNLASLQIL-NISENNLSGSMISTLNLSSVEHLYLQNNAL 213 (558)
Q Consensus 142 l~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L-~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l 213 (558)
.....+..+..+++|+.|+++.+. +. ..+..+.++++|+.| .+.+......+.....+++|++|++++|.+
T Consensus 223 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l 301 (594)
T 2p1m_B 223 PLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATV 301 (594)
T ss_dssp CHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCC
T ss_pred cHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCC
Confidence 222356666777888888855442 22 233456667777776 333332221111111567888888888876
Q ss_pred cccch-hhhhCCCCCcEEEcCCC-----------CCCCcCEEEccC---------CcCCCCchhhcc-CCCCCCEEEccc
Q 037792 214 GGSIP-NTFFRGSALETLDLRIN-----------EHSNLRTLLLRG---------NYLQGPIPHQLC-HLRKLGIMDISH 271 (558)
Q Consensus 214 ~~~~~-~~~~~~~~L~~L~l~~n-----------~~~~L~~L~l~~---------n~l~~~~~~~~~-~l~~L~~L~l~~ 271 (558)
++... ..+..+++|+.|++++| .+++|++|++.+ +.+++.....+. .+++|+.|+++.
T Consensus 302 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~ 381 (594)
T 2p1m_B 302 QSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC 381 (594)
T ss_dssp CHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE
T ss_pred CHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc
Confidence 64332 23456778888888776 367788887732 344433333332 477888887777
Q ss_pred CcCccccChhhhc-c---cccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeeccccccc
Q 037792 272 NRLNGSIPACITN-M---LFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYES 347 (558)
Q Consensus 272 n~l~~~~p~~~~~-l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (558)
|.+++..+..+.. + ....+...... ..+....
T Consensus 382 ~~l~~~~~~~l~~~~~~L~~L~L~~~~~~--------------------------------------------~~~~l~~ 417 (594)
T 2p1m_B 382 RQMTNAALITIARNRPNMTRFRLCIIEPK--------------------------------------------APDYLTL 417 (594)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEEESSTT--------------------------------------------CCCTTTC
T ss_pred CCcCHHHHHHHHhhCCCcceeEeecccCC--------------------------------------------CcccccC
Confidence 7776443333321 1 11111000000 0000000
Q ss_pred ------cc--chhhcccCEEEccCCCCCCCCCccccC-ccCCCeeeccCCcCCccchhhh-hccccCCeEeCCCCccccc
Q 037792 348 ------YK--GDILELMAGLDLSNNELTGDIPSEIGD-LQNIHGLNLSHNFLSGSIPESF-SNLKMIESLDLSHNKLNGQ 417 (558)
Q Consensus 348 ------~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~i~~~ 417 (558)
+. ...+++|+.|++++ .+++..+..+.. +++|++|++++|.+++..+..+ .++++|++|++++|.++..
T Consensus 418 ~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~ 496 (594)
T 2p1m_B 418 EPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK 496 (594)
T ss_dssp CCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH
T ss_pred CchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH
Confidence 00 01157888888877 565444444544 7888899999888876655555 6788899999998888644
Q ss_pred Cch-hcccCCCCCEEecCCCCCc
Q 037792 418 IPP-QLTELHSLSTFDVSYNNLS 439 (558)
Q Consensus 418 ~~~-~l~~l~~L~~L~l~~N~l~ 439 (558)
... ....+++|+.|++++|+++
T Consensus 497 ~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 497 ALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHHHHhCCCCCEEeeeCCCCC
Confidence 333 3445788889999888874
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-27 Score=233.67 Aligned_cols=83 Identities=23% Similarity=0.201 Sum_probs=42.6
Q ss_pred hcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEe
Q 037792 353 LELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFD 432 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~ 432 (558)
+++|+.|++++|.+++. + ....+++|++|++++|.+++. |..+..+++|+.|++++|.++. +|..+..+++|+.|+
T Consensus 168 l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~ 243 (317)
T 3o53_A 168 SDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFD 243 (317)
T ss_dssp TTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEE
T ss_pred cCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEE
Confidence 34455555555555533 1 122355555555555555533 2235555555555555555552 344455555555555
Q ss_pred cCCCCCc
Q 037792 433 VSYNNLS 439 (558)
Q Consensus 433 l~~N~l~ 439 (558)
+++|+++
T Consensus 244 l~~N~~~ 250 (317)
T 3o53_A 244 LRGNGFH 250 (317)
T ss_dssp CTTCCCB
T ss_pred ccCCCcc
Confidence 5555555
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-27 Score=232.59 Aligned_cols=89 Identities=21% Similarity=0.271 Sum_probs=58.6
Q ss_pred hcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCccc-ccCchhcccCCCCCEE
Q 037792 353 LELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN-GQIPPQLTELHSLSTF 431 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~l~~l~~L~~L 431 (558)
+++|+.|++++|.+++. |..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+. +.+|..+..+++|+.+
T Consensus 190 l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l 267 (317)
T 3o53_A 190 FAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTV 267 (317)
T ss_dssp CTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHH
T ss_pred cccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEE
Confidence 45666677777776633 334667777777777777777 45666777777777777777776 5566667777777777
Q ss_pred ecC-CCCCcCCCC
Q 037792 432 DVS-YNNLSGPIP 443 (558)
Q Consensus 432 ~l~-~N~l~~~~p 443 (558)
+++ .+.+.+..|
T Consensus 268 ~l~~~~~l~~~~~ 280 (317)
T 3o53_A 268 AKQTVKKLTGQNE 280 (317)
T ss_dssp HHHHHHHHHSSSS
T ss_pred ECCCchhccCCch
Confidence 776 334444444
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.9e-27 Score=244.59 Aligned_cols=244 Identities=20% Similarity=0.208 Sum_probs=174.8
Q ss_pred CCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCCCcCCCCccEEEcc
Q 037792 130 TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQ 209 (558)
Q Consensus 130 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~ 209 (558)
++|+.|++++|.+++..|..|..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++.+. .++|++|+++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~ 107 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAA 107 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEECc
Confidence 367777777777776666677777777777777777765444 6777777777777777766543 2678888888
Q ss_pred CCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccc
Q 037792 210 NNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSR 289 (558)
Q Consensus 210 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~ 289 (558)
+|.+++..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+..
T Consensus 108 ~N~l~~~~~~----------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~----- 166 (487)
T 3oja_A 108 NNNISRVSCS----------------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA----- 166 (487)
T ss_dssp SSCCCCEEEC----------------CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG-----
T ss_pred CCcCCCCCcc----------------ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh-----
Confidence 8877754332 1356777777778888777777888888888888888887666655431
Q ss_pred cccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCC
Q 037792 290 VENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGD 369 (558)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 369 (558)
.+++|+.|++++|.+++.
T Consensus 167 --------------------------------------------------------------~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 167 --------------------------------------------------------------SSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp --------------------------------------------------------------GTTTCCEEECTTSCCCEE
T ss_pred --------------------------------------------------------------hCCcccEEecCCCccccc
Confidence 067788888888888855
Q ss_pred CCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCC-CCC-Ccc
Q 037792 370 IPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGP-IPD-KEQ 447 (558)
Q Consensus 370 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~-~p~-~~~ 447 (558)
.+ ...+++|++|+|++|.+++.+| .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++.+. +|. ...
T Consensus 185 ~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 185 KG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp EC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred cc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence 22 3358889999999999886544 48888899999999999885 566688888999999999988832 222 222
Q ss_pred cCCCCccccc-------CCCCCCCCC
Q 037792 448 FSTFDESSYR-------GNLFLCGPA 466 (558)
Q Consensus 448 ~~~l~~~~~~-------~N~~~C~~~ 466 (558)
+..+..+... +|++.|+|+
T Consensus 261 l~~L~~l~~~~~~~~~~~~~~~c~~~ 286 (487)
T 3oja_A 261 NQRVQTVAKQTVKKLTGQNEEECTVP 286 (487)
T ss_dssp CHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred CCCCcEEeccccccccCCCcccccCC
Confidence 3334444443 788888775
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-25 Score=234.72 Aligned_cols=173 Identities=24% Similarity=0.300 Sum_probs=76.7
Q ss_pred ccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEc
Q 037792 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDL 89 (558)
Q Consensus 10 L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 89 (558)
+++|++++|.++ .+|..++ ++|++|++++|.++. +|. .+++|++|++++|.++ .+|. .+++|++|++
T Consensus 42 l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~L 108 (622)
T 3g06_A 42 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELSI 108 (622)
T ss_dssp CCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEE
T ss_pred CcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEEC
Confidence 455555555555 5554443 455555555555552 232 3445555555555554 3443 3445555555
Q ss_pred cCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCccc
Q 037792 90 SNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGN 169 (558)
Q Consensus 90 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (558)
++|.+++. +. .+++|+.|++++|.++. +|.. +++|++|++++|.+++ +|. .+++|+.|++++|.+++
T Consensus 109 s~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~- 175 (622)
T 3g06_A 109 FSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS- 175 (622)
T ss_dssp CSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-
T ss_pred cCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-
Confidence 55554432 11 34445555555554442 2221 2444455555444442 221 12344444444444442
Q ss_pred chhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCc
Q 037792 170 IPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALG 214 (558)
Q Consensus 170 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~ 214 (558)
+| ..+++|+.|++++|.+++.+. ..++|+.|++++|.++
T Consensus 176 l~---~~~~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~ 214 (622)
T 3g06_A 176 LP---MLPSGLQELSVSDNQLASLPT---LPSELYKLWAYNNRLT 214 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS
T ss_pred Cc---ccCCCCcEEECCCCCCCCCCC---ccchhhEEECcCCccc
Confidence 22 223444444444444443222 1234444444444443
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-27 Score=233.32 Aligned_cols=248 Identities=21% Similarity=0.197 Sum_probs=193.3
Q ss_pred CcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCC-CCCchhhh-------CCCCCCEEEcccccCCccchHH
Q 037792 5 SAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFE-GNIPSSIG-------KMQGLRLLDVSSNNFAGELSQS 76 (558)
Q Consensus 5 ~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~ 76 (558)
...++|+.|++++|.+ .+|..++.. |++|++++|.++ ...|..+. ++++|++|++++|.+++.+|..
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 3456788888888888 688877763 888889888884 45565555 7889999999999988777776
Q ss_pred HH-hcCCCCCEEEccCCccCccCchhhcCC-----CccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCC--Ccc
Q 037792 77 LV-INCFSLEWLDLSNNNFVGQIFPNYMNL-----TRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGH--IPS 148 (558)
Q Consensus 77 ~~-~~l~~L~~L~l~~n~i~~~~~~~~~~l-----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~ 148 (558)
++ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..+..+.++++|++|++++|++.+. .+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 53 6788999999999998876 6777766 8899999999999887778888899999999999987654 233
Q ss_pred cc--cCCCCCcEEEcccCcCcc---cchhhhcCCcccceeeccccccccccC-CCc-CCCCccEEEccCCcCcccchhhh
Q 037792 149 WM--GNFSTLQILSMSKNLLEG---NIPVQFNNLASLQILNISENNLSGSMI-STL-NLSSVEHLYLQNNALGGSIPNTF 221 (558)
Q Consensus 149 ~~--~~l~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~-~~~~L~~L~l~~n~l~~~~~~~~ 221 (558)
.+ ..+++|++|++++|++.+ .....+..+++|+.|++++|.+++..+ ..+ .+++|++|++++|.++ .+|..+
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~ 272 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence 33 778899999999998873 222345677899999999998887653 223 6788999999999887 555443
Q ss_pred hCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCcc
Q 037792 222 FRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNG 276 (558)
Q Consensus 222 ~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 276 (558)
. ++|++|++++|.+++. |. +..+++|++|++++|++++
T Consensus 273 ~---------------~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 273 P---------------AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp C---------------SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred c---------------CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 2 5678888888888866 55 8899999999999999874
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.2e-27 Score=228.42 Aligned_cols=248 Identities=20% Similarity=0.268 Sum_probs=137.7
Q ss_pred CCCCCEEEccCCccCccCchhhcCCCccCeeeccccccc-cccchhhc-------CCCCCCEEEccCCcCCCCCcccc--
Q 037792 81 CFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFS-GKIKDGLL-------RSTELMVLDISNNRLSGHIPSWM-- 150 (558)
Q Consensus 81 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~-~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~-- 150 (558)
.++|++|++++|.+ .+|..+... |+.|++++|.+. ...+..+. ++++|++|++++|++++..|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 34455555555555 333333322 555555555553 22333332 56677777777777776666654
Q ss_pred cCCCCCcEEEcccCcCcccchhhhcCC-----cccceeeccccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCC
Q 037792 151 GNFSTLQILSMSKNLLEGNIPVQFNNL-----ASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRG 224 (558)
Q Consensus 151 ~~l~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~ 224 (558)
..+++|++|++++|++.+. |..+..+ ++|++|++++|.+.+.++..+ .+++|++|++++|++.+..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------ 190 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG------ 190 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH------
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH------
Confidence 6677777777777777654 5555554 555555555555555443333 44555555555554432211
Q ss_pred CCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhc--cCCCCCCEEEcccCcCccc--cChhhhcccccccccCccccccc
Q 037792 225 SALETLDLRINEHSNLRTLLLRGNYLQGPIPHQL--CHLRKLGIMDISHNRLNGS--IPACITNMLFSRVENGYLYGFDI 300 (558)
Q Consensus 225 ~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~--~p~~~~~l~~~~~~~~~~~~~~~ 300 (558)
.+..+ ..+++|++|++++|++++. ++..+..
T Consensus 191 -----------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~---------------- 225 (312)
T 1wwl_A 191 -----------------------------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAA---------------- 225 (312)
T ss_dssp -----------------------------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHH----------------
T ss_pred -----------------------------HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHh----------------
Confidence 11122 4455555555555555410 0000000
Q ss_pred hhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCC-ccccCccC
Q 037792 301 VLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIP-SEIGDLQN 379 (558)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~ 379 (558)
.+++|+.|++++|.+++..| ..+..+++
T Consensus 226 ---------------------------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 254 (312)
T 1wwl_A 226 ---------------------------------------------------ARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254 (312)
T ss_dssp ---------------------------------------------------TTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred ---------------------------------------------------cCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence 04556666666666665443 34455677
Q ss_pred CCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcC
Q 037792 380 IHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSG 440 (558)
Q Consensus 380 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~ 440 (558)
|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 255 L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 255 LNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 777777777777 5555554 6777777777777754 44 6777777777777777764
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-27 Score=254.61 Aligned_cols=384 Identities=12% Similarity=0.091 Sum_probs=249.1
Q ss_pred CcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCC-cCCCC-CchhhhCCCCCCEEEcccccCCccchH---HHHh
Q 037792 5 SAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKN-SFEGN-IPSSIGKMQGLRLLDVSSNNFAGELSQ---SLVI 79 (558)
Q Consensus 5 ~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~ 79 (558)
..+++|++|++++|.+++..+..+...+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+. .+..
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred HhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 367899999999999987667677656899999999998 55432 344556899999999999997743332 2223
Q ss_pred cCCCCCEEEccCCc--cCcc-CchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCc-------CCCCCccc
Q 037792 80 NCFSLEWLDLSNNN--FVGQ-IFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNR-------LSGHIPSW 149 (558)
Q Consensus 80 ~l~~L~~L~l~~n~--i~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~ 149 (558)
.+++|++|++++|. +... ....+.++++|++|++++|......+..+..+++|++|+++.+. +.+ .+..
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~ 260 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVA 260 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHH
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHH
Confidence 67799999999986 3211 12223567999999999983323367778889999999976553 221 2335
Q ss_pred ccCCCCCcEE-EcccCcCcccchhhhcCCcccceeeccccccccccCCC-c-CCCCccEEEccCCcCccc-chhhhhCCC
Q 037792 150 MGNFSTLQIL-SMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMIST-L-NLSSVEHLYLQNNALGGS-IPNTFFRGS 225 (558)
Q Consensus 150 ~~~l~~L~~L-~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~-~~~~L~~L~l~~n~l~~~-~~~~~~~~~ 225 (558)
+.++++|+.| .+.+... ..++..+..+++|++|++++|.++...... . .+++|++|++++| +.+. .+.....++
T Consensus 261 l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK 338 (594)
T ss_dssp HHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred HhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence 6777778877 3433322 234444456678888888887765432221 1 5678888888877 3322 222233467
Q ss_pred CCcEEEcCC---------C------------CCCCcCEEEccCCcCCCCchhhcc-CCCCCCEEEcc--c----CcCccc
Q 037792 226 ALETLDLRI---------N------------EHSNLRTLLLRGNYLQGPIPHQLC-HLRKLGIMDIS--H----NRLNGS 277 (558)
Q Consensus 226 ~L~~L~l~~---------n------------~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~--~----n~l~~~ 277 (558)
+|+.|+++. + .+++|+.|.+..+.+++.....+. .+++|+.|+++ + +.+++.
T Consensus 339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~ 418 (594)
T 2p1m_B 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE 418 (594)
T ss_dssp TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence 788887722 1 267888888877777765555554 57888888888 3 344311
Q ss_pred cCh-h----hhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccc--cc--
Q 037792 278 IPA-C----ITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYE--SY-- 348 (558)
Q Consensus 278 ~p~-~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-- 348 (558)
... . +..++.. + .+.. .. ... .+
T Consensus 419 ~~~~~~~~l~~~~~~L--~--------------------------------------------~L~L-~~-~l~~~~~~~ 450 (594)
T 2p1m_B 419 PLDIGFGAIVEHCKDL--R--------------------------------------------RLSL-SG-LLTDKVFEY 450 (594)
T ss_dssp CTHHHHHHHHHHCTTC--C--------------------------------------------EEEC-CS-SCCHHHHHH
T ss_pred chhhHHHHHHhhCCCc--c--------------------------------------------EEee-cC-cccHHHHHH
Confidence 110 1 1111100 0 0000 00 000 00
Q ss_pred cchhhcccCEEEccCCCCCCCCCccc-cCccCCCeeeccCCcCCccchh-hhhccccCCeEeCCCCcccccCchhc-ccC
Q 037792 349 KGDILELMAGLDLSNNELTGDIPSEI-GDLQNIHGLNLSHNFLSGSIPE-SFSNLKMIESLDLSHNKLNGQIPPQL-TEL 425 (558)
Q Consensus 349 ~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~i~~~~~~~l-~~l 425 (558)
-...+++|+.|++++|.+++..+..+ ..+++|++|++++|.+++..+. ....+++|+.|++++|.++......+ ..+
T Consensus 451 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l 530 (594)
T 2p1m_B 451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKM 530 (594)
T ss_dssp HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHC
T ss_pred HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhC
Confidence 00126789999999999976555444 6789999999999999765544 44668999999999999965444444 567
Q ss_pred CCCCEEecCCCCCc
Q 037792 426 HSLSTFDVSYNNLS 439 (558)
Q Consensus 426 ~~L~~L~l~~N~l~ 439 (558)
+.|+...+..+.-.
T Consensus 531 p~l~i~~~~~~~~~ 544 (594)
T 2p1m_B 531 PKLNVEVIDERGAP 544 (594)
T ss_dssp TTEEEEEECSSSCG
T ss_pred CCCEEEEecCCCcc
Confidence 88877777666443
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-26 Score=237.48 Aligned_cols=244 Identities=22% Similarity=0.217 Sum_probs=161.3
Q ss_pred ccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeecc
Q 037792 107 RLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNIS 186 (558)
Q Consensus 107 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 186 (558)
+|+.|++++|.+++..+..+..+++|++|++++|.+++..| +..+++|+.|++++|.+.+..+ .++|+.|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence 44555555555544444445555555555555555543332 5555555555555555553221 2566666666
Q ss_pred ccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhcc-CCCCCC
Q 037792 187 ENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLC-HLRKLG 265 (558)
Q Consensus 187 ~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~ 265 (558)
+|.+.+.+... +++|+.|++++|.+++..|..+.. +++|+.|++++|.+++..|..+. .+++|+
T Consensus 108 ~N~l~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~-------------l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~ 172 (487)
T 3oja_A 108 NNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGC-------------RSRVQYLDLKLNEIDTVNFAELAASSDTLE 172 (487)
T ss_dssp SSCCCCEEECC--CSSCEEEECCSSCCCSGGGBCGGG-------------GSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred CCcCCCCCccc--cCCCCEEECCCCCCCCCCchhhcC-------------CCCCCEEECCCCCCCCcChHHHhhhCCccc
Confidence 66666554432 467777777777777666655554 35556666666777766676665 678888
Q ss_pred EEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeeccccc
Q 037792 266 IMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRY 345 (558)
Q Consensus 266 ~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (558)
.|++++|.+++..+..
T Consensus 173 ~L~Ls~N~l~~~~~~~---------------------------------------------------------------- 188 (487)
T 3oja_A 173 HLNLQYNFIYDVKGQV---------------------------------------------------------------- 188 (487)
T ss_dssp EEECTTSCCCEEECCC----------------------------------------------------------------
T ss_pred EEecCCCccccccccc----------------------------------------------------------------
Confidence 8888888876331100
Q ss_pred ccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCccc-ccCchhccc
Q 037792 346 ESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN-GQIPPQLTE 424 (558)
Q Consensus 346 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~l~~ 424 (558)
.+++|+.|++++|.+++..+ .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.+|..+..
T Consensus 189 ------~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 189 ------VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp ------CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred ------cCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence 06778889999998885444 48888999999999999984 6777888899999999999987 566777888
Q ss_pred CCCCCEEecC-------CCCCcCCCCC
Q 037792 425 LHSLSTFDVS-------YNNLSGPIPD 444 (558)
Q Consensus 425 l~~L~~L~l~-------~N~l~~~~p~ 444 (558)
++.|+.++++ .|+..+.++.
T Consensus 261 l~~L~~l~~~~~~~~~~~~~~~c~~~~ 287 (487)
T 3oja_A 261 NQRVQTVAKQTVKKLTGQNEEECTVPT 287 (487)
T ss_dssp CHHHHHHHHHHHHHHTSSSSCCCSSTT
T ss_pred CCCCcEEeccccccccCCCcccccCCc
Confidence 8888888886 6666655543
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-24 Score=208.31 Aligned_cols=211 Identities=23% Similarity=0.279 Sum_probs=127.9
Q ss_pred CCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcC
Q 037792 155 TLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLR 233 (558)
Q Consensus 155 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 233 (558)
+++.|++++|.+.+..+..|..+++|++|++++|.+.+.....+ .+++|++|++++|.+++..+..+..
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---------- 98 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG---------- 98 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT----------
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcC----------
Confidence 34555555555544444444455555555555555544444333 4455555555555555444444433
Q ss_pred CCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccc-cChhhhcccccccccCccccccchhhhcccccccC
Q 037792 234 INEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGS-IPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVS 312 (558)
Q Consensus 234 ~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (558)
+++|++|++++|.+.+..+..+..+++|++|++++|++++. +|..+.+
T Consensus 99 ---l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~---------------------------- 147 (276)
T 2z62_A 99 ---LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN---------------------------- 147 (276)
T ss_dssp ---CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG----------------------------
T ss_pred ---CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhcc----------------------------
Confidence 23334444444445444444566666677777777666532 3444433
Q ss_pred cccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCC----eeeccCC
Q 037792 313 NYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIH----GLNLSHN 388 (558)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~----~L~Ls~N 388 (558)
+++|+.|++++|.+++..+..+..+++|+ +|++++|
T Consensus 148 ----------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 148 ----------------------------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp ----------------------------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred ----------------------------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 55667777777777665556666666666 7888888
Q ss_pred cCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCCCcc
Q 037792 389 FLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQ 447 (558)
Q Consensus 389 ~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~ 447 (558)
.+++..+..+.. .+|+.|++++|.+++..+..+..+++|+.|++++|+++|.+|....
T Consensus 188 ~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~ 245 (276)
T 2z62_A 188 PMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 245 (276)
T ss_dssp CCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHH
T ss_pred cccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchHH
Confidence 888665555544 4788888988888877777778888899999999999888876443
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-24 Score=207.17 Aligned_cols=199 Identities=18% Similarity=0.210 Sum_probs=150.7
Q ss_pred cEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEcc
Q 037792 11 HSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLS 90 (558)
Q Consensus 11 ~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~ 90 (558)
...+.++..+. .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.++ .++...+..+++|++|+++
T Consensus 10 ~~~~c~~~~l~-~ip~~l~---~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~ 84 (276)
T 2z62_A 10 ITYQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILT 84 (276)
T ss_dssp TEEECTTSCCS-SCCSSSC---TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECT
T ss_pred ceEEecCCCcc-ccCCCCC---CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECC
Confidence 35777777887 7887653 57999999999998777778899999999999999888 5666556788899999999
Q ss_pred CCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCC-CcccccCCCCCcEEEcccCcCccc
Q 037792 91 NNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGH-IPSWMGNFSTLQILSMSKNLLEGN 169 (558)
Q Consensus 91 ~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~ 169 (558)
+|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++. .|..+.++++|+.|++++|++.+.
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 85 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 9988877777888888888888888888876666778888888888888888763 477788888888888888888766
Q ss_pred chhhhcCCcccc----eeeccccccccccCCCcCCCCccEEEccCCcCc
Q 037792 170 IPVQFNNLASLQ----ILNISENNLSGSMISTLNLSSVEHLYLQNNALG 214 (558)
Q Consensus 170 ~~~~~~~l~~L~----~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~ 214 (558)
.+..+..+++|+ .|++++|.+.+.+...+...+|++|++++|.++
T Consensus 165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~ 213 (276)
T 2z62_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK 213 (276)
T ss_dssp CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCS
T ss_pred CHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCcee
Confidence 666666666665 555666655555444443334555555555444
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.92 E-value=6.2e-24 Score=205.22 Aligned_cols=113 Identities=25% Similarity=0.212 Sum_probs=57.9
Q ss_pred hcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEe
Q 037792 353 LELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFD 432 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~ 432 (558)
+++|+.|++++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|+|++|+++...+..|..+++|++|+
T Consensus 99 l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 178 (290)
T 1p9a_G 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178 (290)
T ss_dssp CTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEE
Confidence 34455555555555544444555555555555555555544444455555555555555555544444445555555555
Q ss_pred cCCCCCcCCCCCCcccCCCCcccccCCCCCCCC
Q 037792 433 VSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGP 465 (558)
Q Consensus 433 l~~N~l~~~~p~~~~~~~l~~~~~~~N~~~C~~ 465 (558)
+++|+++...+.......++.+.+.+|||.|+|
T Consensus 179 L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 179 LQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CCCCcCCccChhhcccccCCeEEeCCCCccCcC
Confidence 555555532222333344555555555555555
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.92 E-value=8e-24 Score=202.68 Aligned_cols=202 Identities=20% Similarity=0.258 Sum_probs=165.0
Q ss_pred CccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEE
Q 037792 9 GLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLD 88 (558)
Q Consensus 9 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 88 (558)
+.++++++++.++ .+|..+. +++++|++++|.+++..+.+|.++++|++|++++|.++ .++..++..+++|++|+
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEE
T ss_pred CCCEEEccCCCCC-ccCCCCC---CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEE
Confidence 5788999999998 7887654 57899999999998777778999999999999999988 77777778888999999
Q ss_pred ccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcc
Q 037792 89 LSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEG 168 (558)
Q Consensus 89 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (558)
+++|.+.+..+..+.++++|++|++++|.++...+..+..+++|++|++++|.+++..+..|..+++|+.|++++|.+.+
T Consensus 92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 171 (270)
T 2o6q_A 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR 171 (270)
T ss_dssp CCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence 99998887666677888888888888888887777778888888888888888887666667888888888888888886
Q ss_pred cchhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCcCcc
Q 037792 169 NIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGG 215 (558)
Q Consensus 169 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~ 215 (558)
..+..|..+++|+.|++++|.++..+...+ .+++|+.|++++|.+..
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 666667778888888888888877666555 66777777777777653
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-23 Score=200.52 Aligned_cols=206 Identities=23% Similarity=0.276 Sum_probs=152.6
Q ss_pred CCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcC
Q 037792 155 TLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLR 233 (558)
Q Consensus 155 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 233 (558)
..+.+++++++++ .+|..+. ++++.|++++|.+...+...+ .+++|++|++++|.++...+..+..
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~---------- 83 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE---------- 83 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSS----------
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcC----------
Confidence 5678888888887 4554433 578888888888887776555 7788888888888887554444443
Q ss_pred CCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCc
Q 037792 234 INEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSN 313 (558)
Q Consensus 234 ~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (558)
+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..
T Consensus 84 ---l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------------------- 131 (270)
T 2o6q_A 84 ---LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS----------------------------- 131 (270)
T ss_dssp ---CTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT-----------------------------
T ss_pred ---CCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc-----------------------------
Confidence 455566666667777666667788888888888888887544444433
Q ss_pred ccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCcc
Q 037792 314 YYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGS 393 (558)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 393 (558)
+++|+.|++++|.+++..+..|..+++|++|++++|.+++.
T Consensus 132 ---------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 132 ---------------------------------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp ---------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred ---------------------------------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 67788888888888866666677888888888888888877
Q ss_pred chhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCC
Q 037792 394 IPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD 444 (558)
Q Consensus 394 ~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 444 (558)
.+..|..+++|++|++++|.++...+..+..+++|+.|++++|++.+.++.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 677788888888888888888876666777888888888888888877664
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-23 Score=201.53 Aligned_cols=203 Identities=19% Similarity=0.161 Sum_probs=169.5
Q ss_pred CCcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCC
Q 037792 4 TSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFS 83 (558)
Q Consensus 4 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 83 (558)
..+++++++++++++.++ .+|..++ +++++|++++|.+++..+..|.++++|++|++++|.++ .++.. ..+++
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~ 78 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPV 78 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTT
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCc
Confidence 457889999999999998 8887764 68999999999999888888999999999999999998 55543 67889
Q ss_pred CCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEccc
Q 037792 84 LEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSK 163 (558)
Q Consensus 84 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 163 (558)
|++|++++|.+. .+|..+..+++|++|++++|.+++..+..|.++++|++|++++|++++..+..|..+++|+.|++++
T Consensus 79 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence 999999999887 4567788888899999999888877777888888888888888888877777778888888888888
Q ss_pred CcCcccchhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCc
Q 037792 164 NLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALG 214 (558)
Q Consensus 164 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~ 214 (558)
|++.+..+..|..+++|+.|++++|.++..+...+..++|+.+++++|.+.
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 888866666677888888888888888877776667777888888888775
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-23 Score=199.31 Aligned_cols=228 Identities=18% Similarity=0.217 Sum_probs=176.4
Q ss_pred CccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEE
Q 037792 9 GLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLD 88 (558)
Q Consensus 9 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 88 (558)
++..+++..+.+.+... .. .+++|+.|++++|.++.. ..+..+++|++|++++|.++ .++ .+..+++|++|+
T Consensus 20 ~l~~l~l~~~~~~~~~~--~~-~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~-~~~--~l~~l~~L~~L~ 91 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVT--QN-ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLH-DIS--ALKELTNLTYLI 91 (272)
T ss_dssp HHHHHHHTCSCTTSEEC--HH-HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCC-CCG--GGTTCTTCCEEE
T ss_pred HHHHHHhcCcccccccc--cc-cccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCC-Cch--hhcCCCCCCEEE
Confidence 44455666666653322 22 267888888888888732 35788888888888888887 444 246788888888
Q ss_pred ccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcc
Q 037792 89 LSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEG 168 (558)
Q Consensus 89 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (558)
+++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++
T Consensus 92 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 171 (272)
T 3rfs_A 92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS 171 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc
Confidence 88888887766678888888888888888887777778888889999998888887777777888889999999888887
Q ss_pred cchhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccC
Q 037792 169 NIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRG 247 (558)
Q Consensus 169 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~ 247 (558)
..+..+..+++|+.|++++|.+++.++..+ .+++|++|++++|.+.+. +++++.++++.
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~--------------------~~~l~~l~~~~ 231 (272)
T 3rfs_A 172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT--------------------CPGIRYLSEWI 231 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC--------------------TTTTHHHHHHH
T ss_pred cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc--------------------CcHHHHHHHHH
Confidence 777777888889999999888888777655 788899999988887642 34566677777
Q ss_pred CcCCCCchhhccCCCCC
Q 037792 248 NYLQGPIPHQLCHLRKL 264 (558)
Q Consensus 248 n~l~~~~~~~~~~l~~L 264 (558)
|.+++.+|..++.++..
T Consensus 232 n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 232 NKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp HHTGGGBBCTTSCBCGG
T ss_pred HhCCCcccCcccccCCC
Confidence 88888888888776653
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-23 Score=200.50 Aligned_cols=227 Identities=18% Similarity=0.206 Sum_probs=191.8
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeec
Q 037792 34 KLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYL 113 (558)
Q Consensus 34 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 113 (558)
.+..+++..+.+... .....+++|+.|++++|.++ .++. +..+++|++|++++|.+.+ .+.+..+++|++|++
T Consensus 20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L 92 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHD--ISALKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCC--CGGGTTCTTCCEEEC
T ss_pred HHHHHHhcCcccccc--cccccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCC--chhhcCCCCCCEEEC
Confidence 556667777777644 34678899999999999988 5554 4789999999999999986 357899999999999
Q ss_pred cccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccc
Q 037792 114 YNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGS 193 (558)
Q Consensus 114 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~ 193 (558)
++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence 99999988888889999999999999999988888899999999999999999977777789999999999999999988
Q ss_pred cCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccC
Q 037792 194 MISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHN 272 (558)
Q Consensus 194 ~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 272 (558)
++..+ .+++|++|++++|.+++..+..+..+ ++|+.|++++|.+.+ .+++|+.+++..|
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-------------~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n 232 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRL-------------TSLQYIWLHDNPWDC-------TCPGIRYLSEWIN 232 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC-------------TTCCEEECCSSCBCC-------CTTTTHHHHHHHH
T ss_pred CHHHhcCCccCCEEECCCCcCCccCHHHHhCC-------------cCCCEEEccCCCccc-------cCcHHHHHHHHHH
Confidence 87765 78999999999999997777666654 455566666666653 3668999999999
Q ss_pred cCccccChhhhcccc
Q 037792 273 RLNGSIPACITNMLF 287 (558)
Q Consensus 273 ~l~~~~p~~~~~l~~ 287 (558)
+++|.+|.+++.+..
T Consensus 233 ~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 233 KHSGVVRNSAGSVAP 247 (272)
T ss_dssp HTGGGBBCTTSCBCG
T ss_pred hCCCcccCcccccCC
Confidence 999999998887653
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-23 Score=209.37 Aligned_cols=182 Identities=23% Similarity=0.240 Sum_probs=87.9
Q ss_pred EEcccccCCccchHHHHhcCCCCCEEEccCCccCccCc----hhhcCCC-ccCeeeccccccccccchhhcCC-----CC
Q 037792 62 LDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIF----PNYMNLT-RLWALYLYNNNFSGKIKDGLLRS-----TE 131 (558)
Q Consensus 62 L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~----~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~l-----~~ 131 (558)
+++++|.+++.+|. +....++|++|++++|.+.+..+ ..+..++ +|++|++++|.++...+..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEE-FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHH-HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHH-HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 45666666644443 22444446666666666655444 4445555 55555555555554444444332 44
Q ss_pred CCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCC-cccceeeccccccccccCCCc-----C-CCCcc
Q 037792 132 LMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNL-ASLQILNISENNLSGSMISTL-----N-LSSVE 204 (558)
Q Consensus 132 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~-----~-~~~L~ 204 (558)
|++|++++|.+++..+..+.. .+..+ ++|+.|++++|.+++.....+ . .++|+
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~--------------------~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 141 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVK--------------------TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHH--------------------HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCC
T ss_pred ccEEECcCCcCChHHHHHHHH--------------------HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCcee
Confidence 555555555444333322111 11222 344444444444443322211 1 23566
Q ss_pred EEEccCCcCcccchhh----hhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchh----hccCC-CCCCEEEcccCcCc
Q 037792 205 HLYLQNNALGGSIPNT----FFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPH----QLCHL-RKLGIMDISHNRLN 275 (558)
Q Consensus 205 ~L~l~~n~l~~~~~~~----~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~----~~~~l-~~L~~L~l~~n~l~ 275 (558)
+|++++|.+++..... +... .++|++|++++|.+++..+. .+..+ ++|++|++++|.++
T Consensus 142 ~L~Ls~N~l~~~~~~~l~~~l~~~------------~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 142 SLNLRGNDLGIKSSDELIQILAAI------------PANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHTS------------CTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred EEEccCCcCCHHHHHHHHHHHhcC------------CccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 6666666665433322 2221 12555556666666554443 33344 47777777777775
Q ss_pred c
Q 037792 276 G 276 (558)
Q Consensus 276 ~ 276 (558)
+
T Consensus 210 ~ 210 (362)
T 3goz_A 210 L 210 (362)
T ss_dssp G
T ss_pred h
Confidence 4
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.9e-23 Score=206.72 Aligned_cols=261 Identities=16% Similarity=0.166 Sum_probs=195.8
Q ss_pred EEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCc----hhhhCCC-CCCEEEcccccCCccchHHHHhcC-----
Q 037792 12 SLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIP----SSIGKMQ-GLRLLDVSSNNFAGELSQSLVINC----- 81 (558)
Q Consensus 12 ~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l----- 81 (558)
.++++.|.++|.+|... ...++|++|++++|.+++..+ .++.+++ +|++|++++|.+++..+..+ ..+
T Consensus 2 ~~~ls~n~~~~~~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l-~~~l~~~~ 79 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFT-SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDEL-VQILAAIP 79 (362)
T ss_dssp EEECCCCTTCCHHHHHH-TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHH-HHHHHTSC
T ss_pred ccccccccchHHHHHHH-hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHH-HHHHhccC
Confidence 46889999996666544 435669999999999997776 7888998 89999999999985545444 333
Q ss_pred CCCCEEEccCCccCccCchh----hcCC-CccCeeeccccccccccchhhc----C-CCCCCEEEccCCcCCCCCcc---
Q 037792 82 FSLEWLDLSNNNFVGQIFPN----YMNL-TRLWALYLYNNNFSGKIKDGLL----R-STELMVLDISNNRLSGHIPS--- 148 (558)
Q Consensus 82 ~~L~~L~l~~n~i~~~~~~~----~~~l-~~L~~L~l~~n~i~~~~~~~~~----~-l~~L~~L~L~~n~l~~~~~~--- 148 (558)
++|++|++++|.+++..+.. +..+ ++|++|++++|.++...+..+. . .++|++|++++|.++...+.
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 89999999999998766664 4444 8999999999999876665443 3 36999999999999864443
Q ss_pred -cccCCC-CCcEEEcccCcCcccchhhh----cCC-cccceeeccccccccccCC-----CcC-CCCccEEEccCCcCcc
Q 037792 149 -WMGNFS-TLQILSMSKNLLEGNIPVQF----NNL-ASLQILNISENNLSGSMIS-----TLN-LSSVEHLYLQNNALGG 215 (558)
Q Consensus 149 -~~~~l~-~L~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~L~~n~i~~~~~~-----~~~-~~~L~~L~l~~n~l~~ 215 (558)
.+..++ +|++|++++|++.+..+..+ ... ++|+.|++++|.+...... ... .++|++|++++|.+++
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 345555 89999999999987766544 445 5999999999999873222 223 4699999999999987
Q ss_pred cchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCC-------chhhccCCCCCCEEEcccCcCccccChhhh
Q 037792 216 SIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGP-------IPHQLCHLRKLGIMDISHNRLNGSIPACIT 283 (558)
Q Consensus 216 ~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 283 (558)
..+..+...- ..+++|++|++++|.+.+. ++..+..+++|+.|++++|++.+..+..+.
T Consensus 240 ~~~~~l~~~~---------~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~ 305 (362)
T 3goz_A 240 PSLENLKLLK---------DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPIS 305 (362)
T ss_dssp CCHHHHHHTT---------TTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHH
T ss_pred HHHHHHHHHH---------hcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHH
Confidence 6664443220 1346677888888874432 344677889999999999999866554443
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-22 Score=188.90 Aligned_cols=209 Identities=14% Similarity=0.164 Sum_probs=171.9
Q ss_pred EccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEccccc-CCccchHHHHhcCCCCCEEEccC-
Q 037792 14 DISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNN-FAGELSQSLVINCFSLEWLDLSN- 91 (558)
Q Consensus 14 ~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~l~~- 91 (558)
++..+.++ .+|. + .++|++|++++|.+++..+..|.++++|++|++++|. ++ .++...+.++++|++|++++
T Consensus 17 ~v~c~~l~-~ip~-~---~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~ 90 (239)
T 2xwt_C 17 RVTCKDIQ-RIPS-L---PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNT 90 (239)
T ss_dssp EEEECSCS-SCCC-C---CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEE
T ss_pred eeEccCcc-ccCC-C---CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCC
Confidence 33344476 8887 3 3589999999999998777789999999999999997 77 77777778999999999998
Q ss_pred CccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCC---EEEccCC-cCCCCCcccccCCCCCc-EEEcccCcC
Q 037792 92 NNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELM---VLDISNN-RLSGHIPSWMGNFSTLQ-ILSMSKNLL 166 (558)
Q Consensus 92 n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~L~~n~l 166 (558)
|.++...+..|.++++|++|++++|.+++ .|. +..+++|+ +|++++| .++...+..|.++++|+ .|++++|++
T Consensus 91 n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l 168 (239)
T 2xwt_C 91 RNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF 168 (239)
T ss_dssp TTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred CCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC
Confidence 99987777789999999999999999986 454 78888888 9999999 89877777899999999 999999999
Q ss_pred cccchhhhcCCcccceeeccccc-cccccCCCc-CC-CCccEEEccCCcCcccchhhhhCCCCCcEEEcCC
Q 037792 167 EGNIPVQFNNLASLQILNISENN-LSGSMISTL-NL-SSVEHLYLQNNALGGSIPNTFFRGSALETLDLRI 234 (558)
Q Consensus 167 ~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~-~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~ 234 (558)
....+..+.. ++|+.|++++|+ ++..+...+ .+ ++|++|++++|.+++..+. .+++|+.|++++
T Consensus 169 ~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~ 235 (239)
T 2xwt_C 169 TSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARN 235 (239)
T ss_dssp CEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTT
T ss_pred cccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccC
Confidence 8555555655 899999999995 988877766 67 8999999999999854333 345555555554
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.88 E-value=9e-22 Score=186.20 Aligned_cols=183 Identities=22% Similarity=0.218 Sum_probs=150.5
Q ss_pred ccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhc
Q 037792 179 SLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQL 258 (558)
Q Consensus 179 ~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~ 258 (558)
+.+.++++++.++..+.... ++++.|++++|.+.+..+..+.. +++|++|++++|.+++..+..+
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~-------------l~~L~~L~L~~n~l~~~~~~~~ 79 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRG-------------LTKLTWLNLDYNQLQTLSAGVF 79 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTT-------------CTTCCEEECTTSCCCCCCTTTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcC-------------cccCCEEECCCCcCCccCHhHh
Confidence 56677888887776665443 67888888888888766666654 4566667777777877777788
Q ss_pred cCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeee
Q 037792 259 CHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVN 338 (558)
Q Consensus 259 ~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (558)
..+++|++|++++|++++..+..+..
T Consensus 80 ~~l~~L~~L~L~~n~l~~~~~~~~~~------------------------------------------------------ 105 (251)
T 3m19_A 80 DDLTELGTLGLANNQLASLPLGVFDH------------------------------------------------------ 105 (251)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTT------------------------------------------------------
T ss_pred ccCCcCCEEECCCCcccccChhHhcc------------------------------------------------------
Confidence 89999999999999987554444433
Q ss_pred eecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccC
Q 037792 339 FMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418 (558)
Q Consensus 339 ~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~ 418 (558)
+++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..|+.+++|++|+|++|++++..
T Consensus 106 --------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 106 --------------LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp --------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred --------------cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 678999999999999777777899999999999999999887778999999999999999999888
Q ss_pred chhcccCCCCCEEecCCCCCcCCCCC
Q 037792 419 PPQLTELHSLSTFDVSYNNLSGPIPD 444 (558)
Q Consensus 419 ~~~l~~l~~L~~L~l~~N~l~~~~p~ 444 (558)
+..+..+++|+.|++++|++++..+.
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~~~~ 197 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCSRCE 197 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTTSTT
T ss_pred HHHHhCCCCCCEEEeeCCceeCCccc
Confidence 88899999999999999999987554
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-23 Score=209.11 Aligned_cols=258 Identities=18% Similarity=0.224 Sum_probs=189.9
Q ss_pred CccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCch----hhhCCCCCCEEEccccc---CCccchHHH----
Q 037792 9 GLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPS----SIGKMQGLRLLDVSSNN---FAGELSQSL---- 77 (558)
Q Consensus 9 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~L~~n~---l~~~~~~~~---- 77 (558)
.|+...++...+. .++..+.. +++|++|++++|.++...+. .+.++++|++|++++|. +++.+|..+
T Consensus 10 ~L~~~~l~~~~~~-~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~ 87 (386)
T 2ca6_A 10 SLKLDAITTEDEK-SVFAVLLE-DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL 87 (386)
T ss_dssp CCEESSCCSHHHH-TTSHHHHH-CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHH
T ss_pred ccccCCCCHHHHH-HHHHHHhc-CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHH
Confidence 3333344444444 56666655 78999999999998865443 46789999999999864 444556554
Q ss_pred --HhcCCCCCEEEccCCccCc----cCchhhcCCCccCeeeccccccccccchhh----cCC---------CCCCEEEcc
Q 037792 78 --VINCFSLEWLDLSNNNFVG----QIFPNYMNLTRLWALYLYNNNFSGKIKDGL----LRS---------TELMVLDIS 138 (558)
Q Consensus 78 --~~~l~~L~~L~l~~n~i~~----~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~----~~l---------~~L~~L~L~ 138 (558)
+..+++|++|++++|.+.+ .++..+..+++|++|++++|.++...+..+ ..+ ++|++|+++
T Consensus 88 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~ 167 (386)
T 2ca6_A 88 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG 167 (386)
T ss_dssp HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred HHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECC
Confidence 3678999999999999887 356678889999999999999865444333 333 899999999
Q ss_pred CCcCC-CCCc---ccccCCCCCcEEEcccCcCcc-----cchhhhcCCcccceeeccccccc----c-ccCCCcCCCCcc
Q 037792 139 NNRLS-GHIP---SWMGNFSTLQILSMSKNLLEG-----NIPVQFNNLASLQILNISENNLS----G-SMISTLNLSSVE 204 (558)
Q Consensus 139 ~n~l~-~~~~---~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~i~----~-~~~~~~~~~~L~ 204 (558)
+|+++ ...+ ..+..+++|+.|++++|++.. ..+..+..+++|+.|++++|.++ . .+.....+++|+
T Consensus 168 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~ 247 (386)
T 2ca6_A 168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 247 (386)
T ss_dssp SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCC
T ss_pred CCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcC
Confidence 99987 3334 356678899999999998873 23437788899999999999985 2 222223778999
Q ss_pred EEEccCCcCccc----chhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCC----Cchhhc-cCCCCCCEEEcccCcCc
Q 037792 205 HLYLQNNALGGS----IPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQG----PIPHQL-CHLRKLGIMDISHNRLN 275 (558)
Q Consensus 205 ~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~----~~~~~~-~~l~~L~~L~l~~n~l~ 275 (558)
+|++++|.+++. ++..+.. ..+++|++|++++|.+++ .+|..+ .++++|++|++++|+++
T Consensus 248 ~L~L~~n~i~~~~~~~l~~~l~~-----------~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 248 ELGLNDCLLSARGAAAVVDAFSK-----------LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp EEECTTCCCCHHHHHHHHHHHHT-----------CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred EEECCCCCCchhhHHHHHHHHhh-----------ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 999999998765 3444422 025677788888888886 367766 66899999999999998
Q ss_pred cccC
Q 037792 276 GSIP 279 (558)
Q Consensus 276 ~~~p 279 (558)
+..+
T Consensus 317 ~~~~ 320 (386)
T 2ca6_A 317 EEDD 320 (386)
T ss_dssp TTSH
T ss_pred cchh
Confidence 6554
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-23 Score=210.45 Aligned_cols=91 Identities=20% Similarity=0.296 Sum_probs=64.3
Q ss_pred hcccCEEEccCCCCC----CCCCccccCccCCCeeeccCCcCCcc----chhhhhc--cccCCeEeCCCCcccc----cC
Q 037792 353 LELMAGLDLSNNELT----GDIPSEIGDLQNIHGLNLSHNFLSGS----IPESFSN--LKMIESLDLSHNKLNG----QI 418 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~--l~~L~~L~Ls~N~i~~----~~ 418 (558)
+++|+.|++++|.++ ..+|..+..+++|++|+|++|.+++. ++..+.. +++|++|+|++|.++. .+
T Consensus 215 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l 294 (386)
T 2ca6_A 215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 294 (386)
T ss_dssp CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH
T ss_pred CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHH
Confidence 566777777777764 34566677778888888888887765 4455533 7788888888888876 35
Q ss_pred chhc-ccCCCCCEEecCCCCCcCCCC
Q 037792 419 PPQL-TELHSLSTFDVSYNNLSGPIP 443 (558)
Q Consensus 419 ~~~l-~~l~~L~~L~l~~N~l~~~~p 443 (558)
|..+ .++++|++|++++|++++..+
T Consensus 295 ~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 295 KTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHhcCCCceEEEccCCcCCcchh
Confidence 6655 557888888888888876554
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.87 E-value=4e-22 Score=187.21 Aligned_cols=207 Identities=17% Similarity=0.168 Sum_probs=166.0
Q ss_pred CCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCc-cCccCchhhcCCCccCeeeccc-ccccccc
Q 037792 45 FEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNN-FVGQIFPNYMNLTRLWALYLYN-NNFSGKI 122 (558)
Q Consensus 45 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~-n~i~~~~ 122 (558)
++ .+|. +. ++|++|++++|.++ .++...+.++++|++|++++|+ ++...+..|.++++|++|++++ |.++...
T Consensus 23 l~-~ip~-~~--~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 23 IQ-RIPS-LP--PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp CS-SCCC-CC--TTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred cc-ccCC-CC--CcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 54 4555 33 48999999999998 6777667889999999999997 8776666899999999999998 8998777
Q ss_pred chhhcCCCCCCEEEccCCcCCCCCcccccCCCCCc---EEEcccC-cCcccchhhhcCCcccc-eeeccccccccccCCC
Q 037792 123 KDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQ---ILSMSKN-LLEGNIPVQFNNLASLQ-ILNISENNLSGSMIST 197 (558)
Q Consensus 123 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~L~~n~i~~~~~~~ 197 (558)
+..|.++++|++|++++|.+++ +|. +..+++|+ .|++++| .+.+..+..|..+++|+ .|++++|.++..+...
T Consensus 98 ~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~ 175 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYA 175 (239)
T ss_dssp TTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTT
T ss_pred HHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhh
Confidence 7888899999999999999985 565 88888888 9999999 88877777799999999 9999999999877777
Q ss_pred cCCCCccEEEccCCc-CcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCc
Q 037792 198 LNLSSVEHLYLQNNA-LGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNR 273 (558)
Q Consensus 198 ~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 273 (558)
+..++|++|++++|+ +++..+..+..+ .++|+.|++++|.+++..+. .+++|+.|+++++.
T Consensus 176 ~~~~~L~~L~L~~n~~l~~i~~~~~~~l------------~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 176 FNGTKLDAVYLNKNKYLTVIDKDAFGGV------------YSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp TTTCEEEEEECTTCTTCCEECTTTTTTC------------SBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred cCCCCCCEEEcCCCCCcccCCHHHhhcc------------ccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 755889999999995 886656666643 04566666677777744333 56788889888763
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-22 Score=200.39 Aligned_cols=229 Identities=16% Similarity=0.206 Sum_probs=135.4
Q ss_pred CCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCccc-chhhhcCCcccceeeccccccccccCCCc-CCCCccEEE
Q 037792 130 TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGN-IPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLY 207 (558)
Q Consensus 130 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~ 207 (558)
++++.|++++|.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|++|++++|.+++..+..+ .+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 4555555555555544333 33455555555555555433 44455555566666666555543322222 456666666
Q ss_pred ccCC-cCccc-chhhhhCCCCCcEEEcCCCCCCCcCEEEccCC-cCCCC-chhhccCCC-CCCEEEcccCc--Cc-cccC
Q 037792 208 LQNN-ALGGS-IPNTFFRGSALETLDLRINEHSNLRTLLLRGN-YLQGP-IPHQLCHLR-KLGIMDISHNR--LN-GSIP 279 (558)
Q Consensus 208 l~~n-~l~~~-~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n-~l~~~-~~~~~~~l~-~L~~L~l~~n~--l~-~~~p 279 (558)
+++| .+++. .+..+..+ ++|++|++++| .+++. ++..+..++ +|++|++++|. ++ +.+|
T Consensus 149 L~~~~~l~~~~l~~~~~~~-------------~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~ 215 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSC-------------SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS 215 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHC-------------TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH
T ss_pred CCCCCCCCHHHHHHHHhcC-------------CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH
Confidence 6666 45432 34444433 44455555555 55533 455667777 88888888773 33 1222
Q ss_pred hhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEE
Q 037792 280 ACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGL 359 (558)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 359 (558)
..+.. +++|+.|
T Consensus 216 ~~~~~--------------------------------------------------------------------~~~L~~L 227 (336)
T 2ast_B 216 TLVRR--------------------------------------------------------------------CPNLVHL 227 (336)
T ss_dssp HHHHH--------------------------------------------------------------------CTTCSEE
T ss_pred HHHhh--------------------------------------------------------------------CCCCCEE
Confidence 22221 6778888
Q ss_pred EccCCC-CCCCCCccccCccCCCeeeccCCc-CCccchhhhhccccCCeEeCCCCcccccCchhcccC-CCCCEEecCCC
Q 037792 360 DLSNNE-LTGDIPSEIGDLQNIHGLNLSHNF-LSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTEL-HSLSTFDVSYN 436 (558)
Q Consensus 360 ~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l-~~L~~L~l~~N 436 (558)
++++|. +++..+..+..+++|++|++++|. ++......+..+++|+.|++++| ++. ..+..+ .+++.|++++|
T Consensus 228 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n 303 (336)
T 2ast_B 228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCS 303 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCC
T ss_pred eCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecc
Confidence 888887 666666778888888888888885 33333336778888999999888 442 233333 24667778899
Q ss_pred CCcCCCCC
Q 037792 437 NLSGPIPD 444 (558)
Q Consensus 437 ~l~~~~p~ 444 (558)
++++..|.
T Consensus 304 ~l~~~~~~ 311 (336)
T 2ast_B 304 HFTTIARP 311 (336)
T ss_dssp CSCCTTCS
T ss_pred cCccccCC
Confidence 98887775
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-21 Score=184.69 Aligned_cols=179 Identities=22% Similarity=0.279 Sum_probs=121.5
Q ss_pred CccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEE
Q 037792 9 GLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLD 88 (558)
Q Consensus 9 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 88 (558)
+.++++++++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.++ .++...+..+++|++|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCeEEecCCCCcc-ccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccCHhHhccCCcCCEEE
Confidence 4677888888887 7776654 57788888888887777777788888888888888777 45544456677777777
Q ss_pred ccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcc
Q 037792 89 LSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEG 168 (558)
Q Consensus 89 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (558)
+++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|++.+
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 77777776555566667777777777777665555556666666666666666665555556666666666666666665
Q ss_pred cchhhhcCCcccceeecccccccc
Q 037792 169 NIPVQFNNLASLQILNISENNLSG 192 (558)
Q Consensus 169 ~~~~~~~~l~~L~~L~L~~n~i~~ 192 (558)
..+..+..+++|+.|++++|.+..
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCHHHHhCCCCCCEEEeeCCceeC
Confidence 555555555566666666555543
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-22 Score=199.34 Aligned_cols=256 Identities=16% Similarity=0.166 Sum_probs=144.3
Q ss_pred CCCEEEcccccCCccchHHHHhcC--CCCCEEEccCCccCccCchhhcCCCccCeeeccccccccc-cchhhcCCCCCCE
Q 037792 58 GLRLLDVSSNNFAGELSQSLVINC--FSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGK-IKDGLLRSTELMV 134 (558)
Q Consensus 58 ~L~~L~L~~n~l~~~~~~~~~~~l--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~ 134 (558)
.++.++++++.+. + ..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.++.. .+..+..+++|++
T Consensus 48 ~~~~l~l~~~~~~---~-~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH---P-DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC---H-HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCC---H-HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 3777888777665 2 223444 6777777777777654433 45667777777777776543 5555666677777
Q ss_pred EEccCCcCCCCCcccccCCCCCcEEEcccC-cCccc-chhhhcCCcccceeecccc-ccccccCCCcCCCCccEEEccCC
Q 037792 135 LDISNNRLSGHIPSWMGNFSTLQILSMSKN-LLEGN-IPVQFNNLASLQILNISEN-NLSGSMISTLNLSSVEHLYLQNN 211 (558)
Q Consensus 135 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~~~L~~L~l~~n 211 (558)
|++++|.+++..+..++.+++|++|++++| .+++. .+..+..+++|++|++++| .+++..
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~----------------- 185 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH----------------- 185 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH-----------------
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHH-----------------
Confidence 777777666555556666666666666666 44431 3444455555555555555 444311
Q ss_pred cCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCC--cCC-CCchhhccCCCCCCEEEcccCc-CccccChhhhcccc
Q 037792 212 ALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGN--YLQ-GPIPHQLCHLRKLGIMDISHNR-LNGSIPACITNMLF 287 (558)
Q Consensus 212 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n--~l~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~p~~~~~l~~ 287 (558)
.+..+..++ .+|++|++++| .++ +.++..+..+++|+.|++++|. +++..+..+..
T Consensus 186 -----~~~~~~~l~------------~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~--- 245 (336)
T 2ast_B 186 -----VQVAVAHVS------------ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ--- 245 (336)
T ss_dssp -----HHHHHHHSC------------TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG---
T ss_pred -----HHHHHHhcc------------cCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC---
Confidence 233333222 03333333333 222 2334455556666666666665 44333333322
Q ss_pred cccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCC-C
Q 037792 288 SRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNE-L 366 (558)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~-l 366 (558)
+++|+.|++++|. +
T Consensus 246 -----------------------------------------------------------------l~~L~~L~l~~~~~~ 260 (336)
T 2ast_B 246 -----------------------------------------------------------------LNYLQHLSLSRCYDI 260 (336)
T ss_dssp -----------------------------------------------------------------CTTCCEEECTTCTTC
T ss_pred -----------------------------------------------------------------CCCCCEeeCCCCCCC
Confidence 4566666666663 2
Q ss_pred CCCCCccccCccCCCeeeccCCcCCccchhhhhcc-ccCCeEeCCCCcccccCchhccc
Q 037792 367 TGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNL-KMIESLDLSHNKLNGQIPPQLTE 424 (558)
Q Consensus 367 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~Ls~N~i~~~~~~~l~~ 424 (558)
.......+..+++|++|++++| ++.. .+..+ .+++.|++++|.+++..|..+..
T Consensus 261 ~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 261 IPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp CGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred CHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCCcccc
Confidence 2222224667788888888887 4432 23333 34677778888888777766554
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.2e-21 Score=187.21 Aligned_cols=172 Identities=20% Similarity=0.280 Sum_probs=112.9
Q ss_pred CCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCee
Q 037792 32 LPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWAL 111 (558)
Q Consensus 32 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 111 (558)
+++|++|++++|.++. ++ .+..+++|++|++++|.++ .++. +..+++|++|++++|.+.+. +.+..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 5567777777777663 33 5666777777777777776 4444 46677777777777776642 356677777777
Q ss_pred eccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccc
Q 037792 112 YLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLS 191 (558)
Q Consensus 112 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 191 (558)
++++|.+++. + .+..+++|++|++++|.+++..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.++
T Consensus 113 ~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 113 DLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp ECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence 7777777643 2 26667777777777777764433 6667777777777777764322 667777777777777776
Q ss_pred cccCCCcCCCCccEEEccCCcCcccc
Q 037792 192 GSMISTLNLSSVEHLYLQNNALGGSI 217 (558)
Q Consensus 192 ~~~~~~~~~~~L~~L~l~~n~l~~~~ 217 (558)
+.++ ...+++|++|++++|.+++..
T Consensus 187 ~~~~-l~~l~~L~~L~L~~N~l~~~~ 211 (308)
T 1h6u_A 187 DISP-LASLPNLIEVHLKNNQISDVS 211 (308)
T ss_dssp CCGG-GGGCTTCCEEECTTSCCCBCG
T ss_pred cChh-hcCCCCCCEEEccCCccCccc
Confidence 5543 336677777777777776443
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-21 Score=191.83 Aligned_cols=226 Identities=16% Similarity=0.115 Sum_probs=175.6
Q ss_pred CCccEEEccCCcCCCCCChhhh--hcCCCccEEEccCCcCCCCCchhh--hCCCCCCEEEcccccCCccch---HHHHhc
Q 037792 8 HGLHSLDISRNSFSGKLPQNMG--IVLPKLVYMNISKNSFEGNIPSSI--GKMQGLRLLDVSSNNFAGELS---QSLVIN 80 (558)
Q Consensus 8 ~~L~~L~l~~n~l~~~~p~~~~--~~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~---~~~~~~ 80 (558)
..++.+.++++.+....-..+. ..+++|++|++++|.+++..|..+ .++++|++|++++|.+++..+ ...+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3568888888877531111111 125789999999999998888888 899999999999999986433 233357
Q ss_pred CCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccc--c--chhhcCCCCCCEEEccCCcCCCCCcc----cccC
Q 037792 81 CFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGK--I--KDGLLRSTELMVLDISNNRLSGHIPS----WMGN 152 (558)
Q Consensus 81 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~--~--~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~ 152 (558)
+++|++|++++|.+.+..+..+.++++|++|++++|.+.+. . +..+..+++|++|++++|+++. .+. .++.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 89999999999999988888999999999999999997642 1 2234678999999999999973 333 3577
Q ss_pred CCCCcEEEcccCcCcccchhhhcCC---cccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcE
Q 037792 153 FSTLQILSMSKNLLEGNIPVQFNNL---ASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALET 229 (558)
Q Consensus 153 l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~ 229 (558)
+++|++|++++|.+.+..|..+..+ ++|++|++++|.++..+.... ++|++|++++|++++. |. +..
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~------ 292 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDE------ 292 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSC-CC-TTS------
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCC-ch-hhh------
Confidence 8999999999999997777777766 699999999999997665543 8999999999999853 22 343
Q ss_pred EEcCCCCCCCcCEEEccCCcCC
Q 037792 230 LDLRINEHSNLRTLLLRGNYLQ 251 (558)
Q Consensus 230 L~l~~n~~~~L~~L~l~~n~l~ 251 (558)
+++|+.|++++|.++
T Consensus 293 -------l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 293 -------LPEVDNLTLDGNPFL 307 (310)
T ss_dssp -------CCCCSCEECSSTTTS
T ss_pred -------CCCccEEECcCCCCC
Confidence 355566666666665
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-21 Score=190.95 Aligned_cols=225 Identities=16% Similarity=0.158 Sum_probs=177.6
Q ss_pred CCccEEEccCCcCCCCCch---hhhCCCCCCEEEcccccCCccchHHHH-hcCCCCCEEEccCCccCccCc----hhhcC
Q 037792 33 PKLVYMNISKNSFEGNIPS---SIGKMQGLRLLDVSSNNFAGELSQSLV-INCFSLEWLDLSNNNFVGQIF----PNYMN 104 (558)
Q Consensus 33 ~~L~~L~Ls~n~i~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~l~~L~~L~l~~n~i~~~~~----~~~~~ 104 (558)
..++.+.+.++.++...-. .+..+++|++|++++|.+++..|..++ ..+++|++|++++|.+.+..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4688999988877532111 123457799999999999977776654 779999999999999986444 34568
Q ss_pred CCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCC--C--cccccCCCCCcEEEcccCcCcccchh----hhcC
Q 037792 105 LTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGH--I--PSWMGNFSTLQILSMSKNLLEGNIPV----QFNN 176 (558)
Q Consensus 105 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~--~--~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~ 176 (558)
+++|++|++++|.+.+..+..+..+++|++|++++|++.+. . +..+..+++|++|++++|+++. .+. .++.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 99999999999999988888999999999999999997642 1 2334688999999999999973 333 3578
Q ss_pred CcccceeeccccccccccCC-CcC---CCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCC
Q 037792 177 LASLQILNISENNLSGSMIS-TLN---LSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQG 252 (558)
Q Consensus 177 l~~L~~L~L~~n~i~~~~~~-~~~---~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~ 252 (558)
+++|++|++++|.+.+..+. ... +++|++|++++|.++ .+|..+ .++|++|++++|.+++
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~---------------~~~L~~L~Ls~N~l~~ 286 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGL---------------PAKLRVLDLSSNRLNR 286 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCC---------------CSCCSCEECCSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhh---------------cCCCCEEECCCCcCCC
Confidence 89999999999999987433 333 379999999999998 555443 2567788888888885
Q ss_pred CchhhccCCCCCCEEEcccCcCcc
Q 037792 253 PIPHQLCHLRKLGIMDISHNRLNG 276 (558)
Q Consensus 253 ~~~~~~~~l~~L~~L~l~~n~l~~ 276 (558)
. |. +..+++|+.|++++|+++.
T Consensus 287 ~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 287 A-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp C-CC-TTSCCCCSCEECSSTTTSC
T ss_pred C-ch-hhhCCCccEEECcCCCCCC
Confidence 4 32 6788999999999999964
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.85 E-value=8.3e-21 Score=188.77 Aligned_cols=240 Identities=18% Similarity=0.147 Sum_probs=188.9
Q ss_pred cEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCE-EEc
Q 037792 11 HSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEW-LDL 89 (558)
Q Consensus 11 ~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~-L~l 89 (558)
++++.++++++ ++|..+. +++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.++...|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~---~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC---TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCcC---CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 68899999999 9998774 589999999999997666789999999999999999976788888888988876 556
Q ss_pred cCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccC-CcCCCCCcccccCCC-CCcEEEcccCcCc
Q 037792 90 SNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISN-NRLSGHIPSWMGNFS-TLQILSMSKNLLE 167 (558)
Q Consensus 90 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~L~~n~l~ 167 (558)
++|++....+..|.++++|++|++++|.+....+..+....++..+++.+ +.+....+..|.++. .++.|++++|+++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 67899887788899999999999999999877666777777888999866 567655566677764 6889999999998
Q ss_pred ccchhhhcCCcccceeeccc-cccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEc
Q 037792 168 GNIPVQFNNLASLQILNISE-NNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLL 245 (558)
Q Consensus 168 ~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l 245 (558)
.+.+..| ...+|+++++.+ |.++.++...+ .+++|++|++++|+++...+.. +.+|+.|.+
T Consensus 168 ~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~----------------~~~L~~L~~ 230 (350)
T 4ay9_X 168 EIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG----------------LENLKKLRA 230 (350)
T ss_dssp EECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS----------------CTTCCEEEC
T ss_pred CCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh----------------hccchHhhh
Confidence 5555444 457899999974 77887777666 8899999999999998443322 234445554
Q ss_pred cCCcCCCCchhhccCCCCCCEEEcccC
Q 037792 246 RGNYLQGPIPHQLCHLRKLGIMDISHN 272 (558)
Q Consensus 246 ~~n~l~~~~~~~~~~l~~L~~L~l~~n 272 (558)
.++.-...+| .+..+++|+.+++.++
T Consensus 231 l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 231 RSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp TTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred ccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 4443333455 4788899999998754
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.6e-20 Score=180.55 Aligned_cols=209 Identities=20% Similarity=0.285 Sum_probs=151.2
Q ss_pred EEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeecccc
Q 037792 37 YMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNN 116 (558)
Q Consensus 37 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n 116 (558)
.+.+..+.+++.. ...++++|++|++++|.++ .++. +..+++|++|++++|.+.+..+ +..+++|++|++++|
T Consensus 23 ~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n 95 (308)
T 1h6u_A 23 KIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN 95 (308)
T ss_dssp HHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC
T ss_pred HHHhCCCCcCcee--cHHHcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC
Confidence 3345555555332 3456778888888888887 5653 4678888888888888875433 788888888888888
Q ss_pred ccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCC
Q 037792 117 NFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMIS 196 (558)
Q Consensus 117 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 196 (558)
.+++. ..+..+++|++|++++|.+++. +. +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++...
T Consensus 96 ~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~- 168 (308)
T 1h6u_A 96 PLKNV--SAIAGLQSIKTLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP- 168 (308)
T ss_dssp CCSCC--GGGTTCTTCCEEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-
T ss_pred cCCCc--hhhcCCCCCCEEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-
Confidence 88753 3577888888888888888753 33 7788888888888888875433 7788888888888888876554
Q ss_pred CcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCcc
Q 037792 197 TLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNG 276 (558)
Q Consensus 197 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 276 (558)
...+++|++|++++|.+++..+ +.. +++|++|++++|.+++.. .+..+++|+.|++++|++++
T Consensus 169 l~~l~~L~~L~l~~n~l~~~~~--l~~-------------l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKISDISP--LAS-------------LPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GGG-------------CTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred hcCCCCCCEEECCCCccCcChh--hcC-------------CCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 3477888888888888875433 332 456666777777777544 37788888888888888863
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-19 Score=180.61 Aligned_cols=179 Identities=18% Similarity=0.100 Sum_probs=82.6
Q ss_pred CCCEEEccCCccCccCchhhcCCCccCeeecccccccccc-chhhcCCCCCCE-EEccCCcCCCCCcccccCCCCCcEEE
Q 037792 83 SLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKI-KDGLLRSTELMV-LDISNNRLSGHIPSWMGNFSTLQILS 160 (558)
Q Consensus 83 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~ 160 (558)
++++|++++|+++...+.+|.++++|++|++++|.+.+.+ +.+|.+++++++ +.+++|+++...|..|.++++|+.|+
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence 4444444444444333334444444444444444443222 223444444333 33334444444444455555555555
Q ss_pred cccCcCcccchhhhcCCcccceeeccc-cccccccCCCc-C-CCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCC
Q 037792 161 MSKNLLEGNIPVQFNNLASLQILNISE-NNLSGSMISTL-N-LSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEH 237 (558)
Q Consensus 161 L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~-~-~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~ 237 (558)
+++|++....+..+....++..+++.+ +.+...+...+ . ...++.|++++|.++...+.++ . .
T Consensus 111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f-~-------------~ 176 (350)
T 4ay9_X 111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF-N-------------G 176 (350)
T ss_dssp EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS-T-------------T
T ss_pred ccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc-c-------------c
Confidence 555555433333333334444444433 33444333333 2 2345566666666653322222 1 2
Q ss_pred CCcCEEEccC-CcCCCCchhhccCCCCCCEEEcccCcCc
Q 037792 238 SNLRTLLLRG-NYLQGPIPHQLCHLRKLGIMDISHNRLN 275 (558)
Q Consensus 238 ~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 275 (558)
.+++++++.+ |.++...+..|..+++|++|++++|+++
T Consensus 177 ~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 3344444443 4444444455666777777777777765
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-19 Score=165.40 Aligned_cols=176 Identities=18% Similarity=0.226 Sum_probs=136.7
Q ss_pred ccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEc
Q 037792 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDL 89 (558)
Q Consensus 10 L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 89 (558)
-+.++++++.++ .+|..+ .++|++|++++|.+++..+..+.++++|++|++++|+++ .++...+..+++|++|++
T Consensus 9 ~~~v~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L 83 (208)
T 2o6s_A 9 GTTVECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNL 83 (208)
T ss_dssp TTEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEEC
Confidence 367888888888 788665 358899999999998777777888899999999999888 677666678888888888
Q ss_pred cCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCccc
Q 037792 90 SNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGN 169 (558)
Q Consensus 90 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (558)
++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 84 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~- 162 (208)
T 2o6s_A 84 STNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC- 162 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-
T ss_pred CCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-
Confidence 8888886666667888888888888888887666667778888888888888886666667778888888888876552
Q ss_pred chhhhcCCcccceeeccccccccccCCC
Q 037792 170 IPVQFNNLASLQILNISENNLSGSMIST 197 (558)
Q Consensus 170 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~ 197 (558)
.+++|+.|+++.|.+++..+..
T Consensus 163 ------~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 163 ------TCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp ------CTTTTHHHHHHHHHCTTTBBCT
T ss_pred ------CCCCHHHHHHHHHhCCceeecc
Confidence 3456777777777777655443
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-19 Score=166.58 Aligned_cols=157 Identities=20% Similarity=0.251 Sum_probs=111.8
Q ss_pred cEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhh
Q 037792 204 EHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACIT 283 (558)
Q Consensus 204 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 283 (558)
+.++++++.++ .+|..+ .++++.|++++|.+++..+..+..+++|+.|++++|++++..|..|.
T Consensus 14 ~~v~c~~~~l~-~iP~~l---------------~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~ 77 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL---------------PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ 77 (220)
T ss_dssp TEEECTTSCCS-SCCSSC---------------CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred CEEEcCCCCcC-cCCCcc---------------CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhh
Confidence 56667766665 333322 24567777777777766666777778888888888877755555554
Q ss_pred cccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccC
Q 037792 284 NMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSN 363 (558)
Q Consensus 284 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~ 363 (558)
. +++|++|++++
T Consensus 78 ~--------------------------------------------------------------------l~~L~~L~Ls~ 89 (220)
T 2v9t_B 78 G--------------------------------------------------------------------LRSLNSLVLYG 89 (220)
T ss_dssp T--------------------------------------------------------------------CSSCCEEECCS
T ss_pred C--------------------------------------------------------------------CcCCCEEECCC
Confidence 4 56777788888
Q ss_pred CCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCC
Q 037792 364 NELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIP 443 (558)
Q Consensus 364 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p 443 (558)
|.++...+..|..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..+..|..+++|+.|++++|++.+.++
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 88776555667777888888888888877777777777788888888888777766677777778888888777776554
Q ss_pred C
Q 037792 444 D 444 (558)
Q Consensus 444 ~ 444 (558)
.
T Consensus 170 l 170 (220)
T 2v9t_B 170 L 170 (220)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.3e-20 Score=169.51 Aligned_cols=138 Identities=20% Similarity=0.195 Sum_probs=109.4
Q ss_pred CcCEEEccCCcCCCCch-hhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccch
Q 037792 239 NLRTLLLRGNYLQGPIP-HQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNS 317 (558)
Q Consensus 239 ~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (558)
.+++|++++|.+++..+ ..+..+++|+.|++++|++++..+..|..
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~--------------------------------- 79 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG--------------------------------- 79 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT---------------------------------
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC---------------------------------
Confidence 44566666777765533 44677888888888888887554444443
Q ss_pred hhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhh
Q 037792 318 TVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPES 397 (558)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 397 (558)
+++|++|++++|.+++..+..|..+++|++|+|++|++++..|..
T Consensus 80 -----------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 124 (220)
T 2v70_A 80 -----------------------------------ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDS 124 (220)
T ss_dssp -----------------------------------CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTS
T ss_pred -----------------------------------CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhH
Confidence 677888888888888777777888889999999999998888888
Q ss_pred hhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCC
Q 037792 398 FSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD 444 (558)
Q Consensus 398 ~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 444 (558)
|.++++|+.|+|++|.+++..|..|..+++|+.|++++|+++|.++.
T Consensus 125 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 125 FIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp STTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred cCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 88889999999999999888888888889999999999999887765
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-19 Score=166.26 Aligned_cols=175 Identities=21% Similarity=0.206 Sum_probs=86.2
Q ss_pred cEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeeccc
Q 037792 36 VYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYN 115 (558)
Q Consensus 36 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 115 (558)
+.++.+++.++ .+|..+ .++|++|++++|.++ .++...+..+++|++|++++|++.+..+..|..+++|++|++++
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 44555555554 233222 235556666666555 44444445555555555555555544444445555555555555
Q ss_pred cccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccC
Q 037792 116 NNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMI 195 (558)
Q Consensus 116 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 195 (558)
|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+..
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--- 162 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--- 162 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC---
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec---
Confidence 55554444444555555555555555554444444555555555555555554433344445555555555543332
Q ss_pred CCcCCCCccEEEccCCcCcccchhh
Q 037792 196 STLNLSSVEHLYLQNNALGGSIPNT 220 (558)
Q Consensus 196 ~~~~~~~L~~L~l~~n~l~~~~~~~ 220 (558)
.+++|++|+++.|.+++.+|..
T Consensus 163 ---~~~~l~~L~~~~n~~~g~ip~~ 184 (208)
T 2o6s_A 163 ---TCPGIRYLSEWINKHSGVVRNS 184 (208)
T ss_dssp ---CTTTTHHHHHHHHHCTTTBBCT
T ss_pred ---CCCCHHHHHHHHHhCCceeecc
Confidence 2234444444444444444433
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.80 E-value=8.9e-20 Score=168.50 Aligned_cols=155 Identities=21% Similarity=0.289 Sum_probs=126.1
Q ss_pred CEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhh
Q 037792 241 RTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVE 320 (558)
Q Consensus 241 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (558)
+.++++++.++. +|..+. ++++.|++++|++++..+..|..
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~------------------------------------ 54 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSP------------------------------------ 54 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTT------------------------------------
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhC------------------------------------
Confidence 567777777773 454443 67899999999887544444433
Q ss_pred hhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhc
Q 037792 321 LLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSN 400 (558)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 400 (558)
+++|+.|++++|.+++..|..|.++++|++|+|++|.+++..+..|.+
T Consensus 55 --------------------------------l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~ 102 (220)
T 2v9t_B 55 --------------------------------YKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEG 102 (220)
T ss_dssp --------------------------------CTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTT
T ss_pred --------------------------------CCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccC
Confidence 678899999999998888888999999999999999999777777888
Q ss_pred cccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCC-CcccCCCCcccccCCCCCCCCC
Q 037792 401 LKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD-KEQFSTFDESSYRGNLFLCGPA 466 (558)
Q Consensus 401 l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~~~l~~~~~~~N~~~C~~~ 466 (558)
+++|+.|+|++|.+++..|..|..+++|++|++++|++++..+. ...+..++.+++++||+.|+|.
T Consensus 103 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 103 LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 99999999999999988888899999999999999999876665 4556778888899999999885
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.5e-20 Score=182.21 Aligned_cols=181 Identities=25% Similarity=0.201 Sum_probs=113.6
Q ss_pred ceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccC
Q 037792 181 QILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCH 260 (558)
Q Consensus 181 ~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~ 260 (558)
+.++++++.++.++.... +.++.|++++|.+++..+..+.. .+++|+.|++++|.+++..+..|..
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~------------~l~~L~~L~L~~N~i~~i~~~~~~~ 86 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPT------------RLTNLHSLLLSHNHLNFISSEAFVP 86 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSS------------CCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhh------------cccccCEEECCCCcCCccChhhccC
Confidence 467777777776655433 45777777777776555544430 2355556666666666555666777
Q ss_pred CCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeee
Q 037792 261 LRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFM 340 (558)
Q Consensus 261 l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (558)
+++|++|++++|++++..+..|..
T Consensus 87 l~~L~~L~Ls~N~l~~~~~~~~~~-------------------------------------------------------- 110 (361)
T 2xot_A 87 VPNLRYLDLSSNHLHTLDEFLFSD-------------------------------------------------------- 110 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTT--------------------------------------------------------
T ss_pred CCCCCEEECCCCcCCcCCHHHhCC--------------------------------------------------------
Confidence 777777777777776433333332
Q ss_pred cccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhh---hccccCCeEeCCCCccccc
Q 037792 341 TKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESF---SNLKMIESLDLSHNKLNGQ 417 (558)
Q Consensus 341 ~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~Ls~N~i~~~ 417 (558)
+++|+.|+|++|.+.+..+..|..+++|++|+|++|.+++..+..| ..+++|+.|+|++|.|+..
T Consensus 111 ------------l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 111 ------------LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp ------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred ------------CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 5667777777777776666667777777777777777775544444 4567777777777777765
Q ss_pred CchhcccCCC--CCEEecCCCCCcCCCC
Q 037792 418 IPPQLTELHS--LSTFDVSYNNLSGPIP 443 (558)
Q Consensus 418 ~~~~l~~l~~--L~~L~l~~N~l~~~~p 443 (558)
.+..+..++. ++.|++++|++.|.+.
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred CHHHhhhccHhhcceEEecCCCccCCcC
Confidence 5566666665 3667777777766544
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.80 E-value=7.8e-19 Score=169.56 Aligned_cols=170 Identities=22% Similarity=0.328 Sum_probs=113.0
Q ss_pred CCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCee
Q 037792 32 LPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWAL 111 (558)
Q Consensus 32 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 111 (558)
+++|++|++++|.++.. + .+..+++|++|++++|.++ .++. +..+++|++|++++|.+.+ .+.+..+++|++|
T Consensus 45 l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L 117 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKD--LSSLKDLKKLKSL 117 (291)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC--GGGGTTCTTCCEE
T ss_pred cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccC-CCcc--cccCCCCCEEECCCCcCCC--ChhhccCCCCCEE
Confidence 56677777777776643 2 4666777777777777776 3443 4667777777777777664 3346777777777
Q ss_pred eccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccc
Q 037792 112 YLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLS 191 (558)
Q Consensus 112 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~ 191 (558)
++++|.+++. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.++
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 7777777643 4566677777777777777644 456667777777777777764433 667777777777777776
Q ss_pred cccCCCcCCCCccEEEccCCcCcc
Q 037792 192 GSMISTLNLSSVEHLYLQNNALGG 215 (558)
Q Consensus 192 ~~~~~~~~~~~L~~L~l~~n~l~~ 215 (558)
+.+. ...+++|+.|++++|.+..
T Consensus 192 ~l~~-l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 192 DLRA-LAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp BCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred CChh-hccCCCCCEEECcCCcccC
Confidence 6432 3366777777777776653
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.7e-19 Score=176.83 Aligned_cols=176 Identities=22% Similarity=0.265 Sum_probs=141.5
Q ss_pred cEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhh-CCCCCCEEEcccccCCccchHHHHhcCCCCCEEEc
Q 037792 11 HSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIG-KMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDL 89 (558)
Q Consensus 11 ~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 89 (558)
++++++++.++ .+|..+. +.+++|+|++|.+++..+..+. ++++|++|++++|.++ .++...+.++++|++|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEEC
Confidence 57899999988 7887664 4688999999999877777777 8899999999999988 666666688889999999
Q ss_pred cCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccc---cCCCCCcEEEcccCcC
Q 037792 90 SNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWM---GNFSTLQILSMSKNLL 166 (558)
Q Consensus 90 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l 166 (558)
++|++....+..|.++++|+.|++++|.+....+..|..+++|+.|++++|.++...+..| ..+++|+.|+|++|++
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 9998887767778888899999999998887778888888889999999888886555555 5688888888888888
Q ss_pred cccchhhhcCCcc--cceeeccccccc
Q 037792 167 EGNIPVQFNNLAS--LQILNISENNLS 191 (558)
Q Consensus 167 ~~~~~~~~~~l~~--L~~L~L~~n~i~ 191 (558)
.+..+..+..++. ++.|++++|.+.
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CccCHHHhhhccHhhcceEEecCCCcc
Confidence 8666667777765 377777777665
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=182.41 Aligned_cols=186 Identities=26% Similarity=0.403 Sum_probs=108.1
Q ss_pred CccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEE
Q 037792 9 GLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLD 88 (558)
Q Consensus 9 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 88 (558)
+|+.|++++|.++ .+|..++ ++|++|++++|.++ .+| ..+++|++|++++|.++ .+|. + .. +|++|+
T Consensus 60 ~L~~L~Ls~n~L~-~lp~~l~---~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~-~ip~-l-~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLS-SLPDNLP---PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS-TLPE-L-PA--SLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCS-CCCSCCC---TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC-C-CT--TCCEEE
T ss_pred CccEEEeCCCCCC-ccCHhHc---CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC-Ccch-h-hc--CCCEEE
Confidence 5666666666666 4665542 56666666666666 344 34566666666666666 3555 2 22 666666
Q ss_pred ccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcc
Q 037792 89 LSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEG 168 (558)
Q Consensus 89 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (558)
+++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|++|++++|.+++ +|. |. ++|+.|++++|.++
T Consensus 127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~- 193 (571)
T 3cvr_A 127 VDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE- 193 (571)
T ss_dssp CCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-
T ss_pred CCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-
Confidence 66666664 333 45666666666666664 333 35666666666666664 444 43 56666666666666
Q ss_pred cchhhhcCCccc-------ceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhC
Q 037792 169 NIPVQFNNLASL-------QILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFR 223 (558)
Q Consensus 169 ~~~~~~~~l~~L-------~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 223 (558)
.+|. +.. +| +.|++++|.++.++.....+++|+.|++++|.+++..|..+..
T Consensus 194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 194 SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 3443 332 44 6666666666655444445566666666666666555555443
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.78 E-value=5.8e-19 Score=186.75 Aligned_cols=189 Identities=21% Similarity=0.309 Sum_probs=119.2
Q ss_pred ccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEc
Q 037792 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDL 89 (558)
Q Consensus 10 L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 89 (558)
+..++++.+.+.+.++. ..+++|+.|++++|.+... + .+..+++|++|+|++|.++ .++. +..+++|++|+|
T Consensus 23 l~~l~l~~~~i~~~~~~---~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~-~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHTTCSCTTSEECH---HHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCC-CCGG--GGGCTTCCEEEC
T ss_pred HHHHhccCCCcccccch---hcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCC-CChh--hccCCCCCEEEC
Confidence 34445555555522221 1256677777777776632 2 4666777777777777776 3443 466777777777
Q ss_pred cCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCccc
Q 037792 90 SNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGN 169 (558)
Q Consensus 90 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (558)
++|.+.+ ++.+..+++|+.|++++|.+... ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+.
T Consensus 95 s~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 95 DENKIKD--LSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp CSSCCCC--CTTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred cCCCCCC--ChhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence 7777664 23566777777777777776642 3466677777777777777644 4566677777777777777654
Q ss_pred chhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcc
Q 037792 170 IPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGG 215 (558)
Q Consensus 170 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~ 215 (558)
.| +..+++|+.|+|++|.+.+.+ .+..+++|+.|++++|.+.+
T Consensus 169 ~~--l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 169 VP--LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp GG--GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEEC
T ss_pred hh--hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcC
Confidence 44 666777777777777776542 23366777777777776654
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-18 Score=160.11 Aligned_cols=158 Identities=22% Similarity=0.226 Sum_probs=128.4
Q ss_pred CccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChh
Q 037792 202 SVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPAC 281 (558)
Q Consensus 202 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~ 281 (558)
..+.++.+++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|++++..+..
T Consensus 20 s~~~v~c~~~~l~-~ip~~~---------------~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~ 83 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGI---------------PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV 83 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCC---------------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred eCCEeEccCCCcC-ccCCCC---------------CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhh
Confidence 4577888887776 444322 367888888888898888888999999999999999986433333
Q ss_pred hhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEc
Q 037792 282 ITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDL 361 (558)
Q Consensus 282 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 361 (558)
+.. +++|+.|++
T Consensus 84 ~~~--------------------------------------------------------------------l~~L~~L~L 95 (229)
T 3e6j_A 84 FDS--------------------------------------------------------------------LTQLTVLDL 95 (229)
T ss_dssp TTT--------------------------------------------------------------------CTTCCEEEC
T ss_pred ccc--------------------------------------------------------------------CCCcCEEEC
Confidence 333 678899999
Q ss_pred cCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCC
Q 037792 362 SNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGP 441 (558)
Q Consensus 362 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~ 441 (558)
++|.+++..+..|..+++|++|++++|+++ .+|..+..+++|+.|+|++|+++...+..+..+++|+.|++++|++.|.
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 999998777777888999999999999998 6778888999999999999999977777888899999999999999987
Q ss_pred CCC
Q 037792 442 IPD 444 (558)
Q Consensus 442 ~p~ 444 (558)
++.
T Consensus 175 c~~ 177 (229)
T 3e6j_A 175 CRD 177 (229)
T ss_dssp BGG
T ss_pred cch
Confidence 764
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-18 Score=159.22 Aligned_cols=153 Identities=16% Similarity=0.268 Sum_probs=120.1
Q ss_pred cEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCc-hhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEc
Q 037792 11 HSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIP-SSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDL 89 (558)
Q Consensus 11 ~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 89 (558)
+++++++|.++ .+|..+. +.+++|++++|.+++..+ ..|.++++|++|++++|.++ .++...+..+++|++|++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CEeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEEC
Confidence 57888888888 7887654 467888888888886644 45788888888888888888 566555677888888888
Q ss_pred cCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcc
Q 037792 90 SNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEG 168 (558)
Q Consensus 90 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (558)
++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+++..|..|..+++|+.|++++|.+..
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 8888887777778888888888888888887777777788888888888888887777778888888888888887764
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.3e-18 Score=163.18 Aligned_cols=164 Identities=18% Similarity=0.263 Sum_probs=94.1
Q ss_pred EEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeeccccc
Q 037792 38 MNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNN 117 (558)
Q Consensus 38 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 117 (558)
+.+..+.+++.. .+..+++|++|++++|.++ .++. +..+++|++|++++|.+.+..+ +.++++|+.|++++|.
T Consensus 29 ~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 29 DNLKKKSVTDAV--TQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK 101 (291)
T ss_dssp HHTTCSCTTSEE--CHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred HHhcCCCccccc--chhhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCc
Confidence 344444444321 2345566666666666665 3433 3556666666666666654332 6666666666666666
Q ss_pred cccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCCC
Q 037792 118 FSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMIST 197 (558)
Q Consensus 118 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~ 197 (558)
+++. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|++.+. ..+..+++|+.|++++|.+++..+ .
T Consensus 102 l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l 174 (291)
T 1h6t_A 102 VKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-L 174 (291)
T ss_dssp CCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-G
T ss_pred CCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-h
Confidence 6532 2356666666666666666642 3455666666666666666543 345666666666666666665544 3
Q ss_pred cCCCCccEEEccCCcCcc
Q 037792 198 LNLSSVEHLYLQNNALGG 215 (558)
Q Consensus 198 ~~~~~L~~L~l~~n~l~~ 215 (558)
..+++|++|++++|.+++
T Consensus 175 ~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 175 AGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp TTCTTCCEEECCSSCCCB
T ss_pred cCCCccCEEECCCCcCCC
Confidence 356666666666666653
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.9e-18 Score=157.36 Aligned_cols=155 Identities=18% Similarity=0.231 Sum_probs=135.1
Q ss_pred CccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEE
Q 037792 9 GLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLD 88 (558)
Q Consensus 9 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 88 (558)
.-+.++++++.+. .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.++ .++...+..+++|++|+
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP---TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred eCCEeEccCCCcC-ccCCCCC---CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEE
Confidence 4578999999998 8998764 78999999999999888889999999999999999997 78877778899999999
Q ss_pred ccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcc
Q 037792 89 LSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEG 168 (558)
Q Consensus 89 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (558)
+++|.+++..+..|..+++|++|++++|.++ .+|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 9999998777777889999999999999998 567778889999999999999987777778888999999999998874
Q ss_pred c
Q 037792 169 N 169 (558)
Q Consensus 169 ~ 169 (558)
.
T Consensus 174 ~ 174 (229)
T 3e6j_A 174 E 174 (229)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.5e-18 Score=177.28 Aligned_cols=195 Identities=22% Similarity=0.256 Sum_probs=139.4
Q ss_pred CCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEc
Q 037792 58 GLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDI 137 (558)
Q Consensus 58 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L 137 (558)
++++|++++|.++ .+|..+ .++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.+ +|++|++
T Consensus 60 ~L~~L~Ls~n~L~-~lp~~l---~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLS-SLPDNL---PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCS-CCCSCC---CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCC-ccCHhH---cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 7888888888877 466644 367888888888877 344 456788888888888875 444 443 8888888
Q ss_pred cCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccc
Q 037792 138 SNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSI 217 (558)
Q Consensus 138 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~ 217 (558)
++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|.+++.+. +. ++|+.|++++|.++ .+
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~--l~-~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE--LP-ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC--CC-TTCCEEECCSSCCS-SC
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch--hh-CCCCEEECcCCCCC-ch
Confidence 8888875 454 56788888888888874 444 56788888888888887555 33 78888888888887 44
Q ss_pred hhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhccc
Q 037792 218 PNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNML 286 (558)
Q Consensus 218 ~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 286 (558)
|. +.. +| .. ..+.|+.|++++|.++ .+|..+..+++|+.|++++|++++.+|..+..+.
T Consensus 196 p~-~~~--~L-----~~-~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 196 PA-VPV--RN-----HH-SEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CC-CC----------------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred hh-HHH--hh-----hc-ccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 44 321 22 00 1244588888888888 4666777789999999999999888888877754
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.75 E-value=7e-18 Score=178.45 Aligned_cols=177 Identities=21% Similarity=0.331 Sum_probs=154.9
Q ss_pred CcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCC
Q 037792 5 SAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSL 84 (558)
Q Consensus 5 ~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 84 (558)
..+++|+.|++++|.+. .+|. + ..+++|+.|+|++|.+++..+ +..+++|++|+|++|.++ .++. +..+++|
T Consensus 40 ~~L~~L~~L~l~~n~i~-~l~~-l-~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~--l~~l~~L 111 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIK-SVQG-I-QYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLSS--LKDLKKL 111 (605)
T ss_dssp HHHTTCCCCBCTTCCCC-CCTT-G-GGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCTT--STTCTTC
T ss_pred hcCCCCCEEECcCCCCC-CChH-H-ccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CChh--hccCCCC
Confidence 46789999999999998 7773 4 449999999999999996654 999999999999999998 5653 5789999
Q ss_pred CEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccC
Q 037792 85 EWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKN 164 (558)
Q Consensus 85 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 164 (558)
++|++++|.+.+ .+.+..+++|+.|++++|.+++. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|
T Consensus 112 ~~L~Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 112 KSLSLEHNGISD--INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp CEEECTTSCCCC--CGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEEecCCCCCC--CccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence 999999999986 35699999999999999999865 678999999999999999997666 899999999999999
Q ss_pred cCcccchhhhcCCcccceeeccccccccccCCC
Q 037792 165 LLEGNIPVQFNNLASLQILNISENNLSGSMIST 197 (558)
Q Consensus 165 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~ 197 (558)
.+.+. ..+..+++|+.|++++|.+...+...
T Consensus 186 ~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~ 216 (605)
T 1m9s_A 186 HISDL--RALAGLKNLDVLELFSQECLNKPINH 216 (605)
T ss_dssp CCCBC--GGGTTCTTCSEEECCSEEEECCCCCC
T ss_pred CCCCC--hHHccCCCCCEEEccCCcCcCCcccc
Confidence 99854 46899999999999999998765443
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.2e-18 Score=154.47 Aligned_cols=114 Identities=23% Similarity=0.340 Sum_probs=96.4
Q ss_pred hcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEe
Q 037792 353 LELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFD 432 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~ 432 (558)
+++|++|++++|.+++..|..|..+++|++|+|++|++++..+..|.++++|++|+|++|++++..|..+..+++|++|+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 77899999999999988899999999999999999999988888899999999999999999999999999999999999
Q ss_pred cCCCCCcCCCCCCcccCCCCcccccCCCCCCCCC
Q 037792 433 VSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGPA 466 (558)
Q Consensus 433 l~~N~l~~~~p~~~~~~~l~~~~~~~N~~~C~~~ 466 (558)
+++|+++|.++..+....+....+.++...|..|
T Consensus 133 L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 133 LASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred eCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 9999999888754333334444455666566544
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-17 Score=150.50 Aligned_cols=153 Identities=18% Similarity=0.292 Sum_probs=90.0
Q ss_pred hCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCC
Q 037792 54 GKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELM 133 (558)
Q Consensus 54 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 133 (558)
..+++|++|++++|.++ .++ . +..+++|++|++++|.+.. ++.+..+++|++|++++|.+++..+..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-G-IEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-T-GGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCcc-ChH-H-HhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 44556666666666665 444 2 3556666666666665432 33556666666666666666655555566666666
Q ss_pred EEEccCCcCCCCCcccccCCCCCcEEEcccCc-CcccchhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCc
Q 037792 134 VLDISNNRLSGHIPSWMGNFSTLQILSMSKNL-LEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNA 212 (558)
Q Consensus 134 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~ 212 (558)
+|++++|.+++..+..++.+++|+.|++++|. +. .++ .+..+++|+.|++++|.+++.. ....+++|++|++++|+
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 66666666665555666666666666666665 44 333 4566666666666666666543 22356666666666666
Q ss_pred Cc
Q 037792 213 LG 214 (558)
Q Consensus 213 l~ 214 (558)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 54
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.5e-20 Score=194.93 Aligned_cols=204 Identities=20% Similarity=0.189 Sum_probs=152.0
Q ss_pred cCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEE
Q 037792 151 GNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETL 230 (558)
Q Consensus 151 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 230 (558)
..+++|+.|++++|++. .+|..++.+++|+.|++++|......+. .+..+...+..|..+..+++|+.|
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~----------ll~~~~~~~~~~~~l~~l~~L~~L 414 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIIL----------LMRALDPLLYEKETLQYFSTLKAV 414 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHH----------HHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHH----------HHHhcccccCCHHHHHHHHhcccC
Confidence 55778888888888887 6788888888888888866642110000 001112345667777777778777
Q ss_pred E-cCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhccccc
Q 037792 231 D-LRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDA 309 (558)
Q Consensus 231 ~-l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 309 (558)
+ ++.|.+..|+.+.+.+|.++...+ ..|+.|++++|++++ +|. +..
T Consensus 415 ~~l~~n~~~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~------------------------- 461 (567)
T 1dce_A 415 DPMRAAYLDDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQ------------------------- 461 (567)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGG-------------------------
T ss_pred cchhhcccchhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccc-------------------------
Confidence 7 666666667777777776663322 248889999988874 443 433
Q ss_pred ccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCc
Q 037792 310 YVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNF 389 (558)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 389 (558)
+++|+.|++++|.++ .+|..++.+++|+.|+|++|.
T Consensus 462 -------------------------------------------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~ 497 (567)
T 1dce_A 462 -------------------------------------------LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA 497 (567)
T ss_dssp -------------------------------------------GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC
T ss_pred -------------------------------------------cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCC
Confidence 678889999999988 778888999999999999999
Q ss_pred CCccchhhhhccccCCeEeCCCCcccccC-chhcccCCCCCEEecCCCCCcCCCCC
Q 037792 390 LSGSIPESFSNLKMIESLDLSHNKLNGQI-PPQLTELHSLSTFDVSYNNLSGPIPD 444 (558)
Q Consensus 390 l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~-~~~l~~l~~L~~L~l~~N~l~~~~p~ 444 (558)
+++ +| .++.+++|+.|+|++|.+++.. |..+..+++|+.|++++|++++.+|.
T Consensus 498 l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 498 LEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp CCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred CCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 986 56 7888999999999999998776 88888999999999999999887665
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-17 Score=163.85 Aligned_cols=288 Identities=11% Similarity=0.047 Sum_probs=175.8
Q ss_pred CCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccC--ccCchhhcCCCccCeeeccccccccccchhhcC-----
Q 037792 56 MQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFV--GQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLR----- 128 (558)
Q Consensus 56 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~--~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~----- 128 (558)
+.+++.|.++++--. .-...+...+++|+.|+|++|++. ..... .++.++.+.+..+.+ ...+|.+
T Consensus 24 ~~~l~~L~l~g~i~~-~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I---~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGKLNA-EDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFV---PAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEEECH-HHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEE---CTTTTEEEETTE
T ss_pred hCceeEEEEeccccH-HHHHHHHHhhccCeEEecCcceeEEecCccc---ccccccccccccccc---CHHHhccccccc
Confidence 557888888865321 111222222788999999999887 22221 222244555555533 3456666
Q ss_pred ---CCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeecccccc----ccccCCCc-CC
Q 037792 129 ---STELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNL----SGSMISTL-NL 200 (558)
Q Consensus 129 ---l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i----~~~~~~~~-~~ 200 (558)
+++|+++++.+ .++.+.+.+|.+|++|+.+++.+|.+..+.+.+|.++.++..+....+.. .......+ .+
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 88888888888 77777777888888888888888888777777888777777776655321 11222222 44
Q ss_pred CCcc-EEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccC
Q 037792 201 SSVE-HLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIP 279 (558)
Q Consensus 201 ~~L~-~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 279 (558)
..|+ .+.+.... .++..+.... -...+++.+.+.++-...........+++|+.+++++|+++...+
T Consensus 176 ~~L~~~i~~~~~~---~l~~~~~~~~---------~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~ 243 (329)
T 3sb4_A 176 EPLETTIQVGAMG---KLEDEIMKAG---------LQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPD 243 (329)
T ss_dssp CCCEEEEEECTTC---CHHHHHHHTT---------CCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECT
T ss_pred cccceeEEecCCC---cHHHHHhhcc---------cCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecH
Confidence 5555 44443321 1222221100 012344455544432221111112236777777777777763333
Q ss_pred hhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEE
Q 037792 280 ACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGL 359 (558)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 359 (558)
.+|.+ +.+|+.+
T Consensus 244 ~aF~~--------------------------------------------------------------------~~~L~~l 255 (329)
T 3sb4_A 244 FTFAQ--------------------------------------------------------------------KKYLLKI 255 (329)
T ss_dssp TTTTT--------------------------------------------------------------------CTTCCEE
T ss_pred hhhhC--------------------------------------------------------------------CCCCCEE
Confidence 34433 5667777
Q ss_pred EccCCCCCCCCCccccCccCCC-eeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEec
Q 037792 360 DLSNNELTGDIPSEIGDLQNIH-GLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDV 433 (558)
Q Consensus 360 ~Ls~n~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l 433 (558)
++.+| +....+.+|.++++|+ .+++.+ .++.+.+.+|.++++|+.+++++|.++.+.+..|.++++|+.+..
T Consensus 256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 77776 6656667788888888 888877 676666778888888888888888888777778888888887753
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-17 Score=158.75 Aligned_cols=170 Identities=19% Similarity=0.288 Sum_probs=93.1
Q ss_pred CCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCE
Q 037792 7 QHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEW 86 (558)
Q Consensus 7 ~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 86 (558)
+++++.++++.+.++ .++ .+. .+++|++|++++|.++. ++ .+..+++|++|++++|.++ .++. +..+++|++
T Consensus 18 l~~l~~l~l~~~~i~-~~~-~~~-~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~~ 89 (263)
T 1xeu_A 18 LANAVKQNLGKQSVT-DLV-SQK-ELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHTCSCTT-SEE-CHH-HHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCE
T ss_pred HHHHHHHHhcCCCcc-ccc-chh-hcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccC-CChh--hccCCCCCE
Confidence 444555566666665 444 222 25666666666666653 33 5666666666666666666 3443 456666666
Q ss_pred EEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcC
Q 037792 87 LDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLL 166 (558)
Q Consensus 87 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 166 (558)
|++++|++.+. +. +.. ++|++|++++|.+++. ..+..+++|+.|++++|++++. + .+..+++|+.|++++|.+
T Consensus 90 L~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 90 LSVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp EECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCC
T ss_pred EECCCCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcC
Confidence 66666666542 11 222 5566666666665532 2355555666666666655533 2 355555555555555555
Q ss_pred cccchhhhcCCcccceeeccccccccc
Q 037792 167 EGNIPVQFNNLASLQILNISENNLSGS 193 (558)
Q Consensus 167 ~~~~~~~~~~l~~L~~L~L~~n~i~~~ 193 (558)
.+. ..+..+++|+.|++++|.+...
T Consensus 163 ~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 163 TNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred cch--HHhccCCCCCEEeCCCCcccCC
Confidence 533 3455555555555555555443
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.1e-17 Score=148.73 Aligned_cols=151 Identities=15% Similarity=0.230 Sum_probs=90.6
Q ss_pred CCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCee
Q 037792 32 LPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWAL 111 (558)
Q Consensus 32 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 111 (558)
+++|++|++++|.++ .+| .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 456666666666666 333 4666666666666666554 333 13556666666666666665555566666666666
Q ss_pred eccccccccccchhhcCCCCCCEEEccCCc-CCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeecccccc
Q 037792 112 YLYNNNFSGKIKDGLLRSTELMVLDISNNR-LSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNL 190 (558)
Q Consensus 112 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i 190 (558)
++++|.+++..+..+..+++|++|++++|. ++ .+| .+..+++|+.|++++|.+.+ .+ .+..+++|+.|++++|++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 666666665555666666666666666665 44 333 45666666666666666653 22 456666666666666665
Q ss_pred c
Q 037792 191 S 191 (558)
Q Consensus 191 ~ 191 (558)
.
T Consensus 194 ~ 194 (197)
T 4ezg_A 194 G 194 (197)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.1e-19 Score=187.65 Aligned_cols=181 Identities=17% Similarity=0.190 Sum_probs=87.6
Q ss_pred cCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCc-------------CCCCCchhhhCCCCCCEEE-cccccCCc
Q 037792 6 AQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNS-------------FEGNIPSSIGKMQGLRLLD-VSSNNFAG 71 (558)
Q Consensus 6 ~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~-------------i~~~~~~~~~~l~~L~~L~-L~~n~l~~ 71 (558)
.+++|+.|+++.|.+. .+|..+.. +++|+.|++++|. ..+..|..++++++|+.|+ ++.|.+.
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~-l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELES-CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred cCccceeccCChhhHH-hhHHHHHH-HHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 4556666666666665 66666655 6666666665543 3344455555555555555 4444332
Q ss_pred cchHHHH-----h--cCCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCC
Q 037792 72 ELSQSLV-----I--NCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSG 144 (558)
Q Consensus 72 ~~~~~~~-----~--~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 144 (558)
.++...+ . ....|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~ 500 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence 1111000 0 01134455555554443 222 444455555555555444 334444445555555555555443
Q ss_pred CCcccccCCCCCcEEEcccCcCcccc-hhhhcCCcccceeecccccccccc
Q 037792 145 HIPSWMGNFSTLQILSMSKNLLEGNI-PVQFNNLASLQILNISENNLSGSM 194 (558)
Q Consensus 145 ~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~i~~~~ 194 (558)
+| .++++++|+.|++++|.+++.. |..+..+++|+.|++++|.+++.+
T Consensus 501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 33 3444455555555555444333 444444444444444444444433
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.2e-17 Score=160.54 Aligned_cols=287 Identities=11% Similarity=0.051 Sum_probs=203.1
Q ss_pred CCCccEEEccCCcCCCCCchhhhC-CCCCCEEEcccccCCcc-chHHHHhcCCCCCEEEccCCccCccCchhhcC-----
Q 037792 32 LPKLVYMNISKNSFEGNIPSSIGK-MQGLRLLDVSSNNFAGE-LSQSLVINCFSLEWLDLSNNNFVGQIFPNYMN----- 104 (558)
Q Consensus 32 l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~L~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~----- 104 (558)
+++++.|.++++ +....-..+.. +++|++|||++|++... .+. ..++.++.+.+..+.+. ...|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~~I~---~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMANFVP---AYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTTEEC---TTTTEEEETTE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcc---ccccccccccccccccC---HHHhccccccc
Confidence 468999999875 32222234555 78999999999998721 111 12333456666666443 467788
Q ss_pred ---CCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcC----cccchhhhcCC
Q 037792 105 ---LTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLL----EGNIPVQFNNL 177 (558)
Q Consensus 105 ---l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~l 177 (558)
+++|+.+++.+ .++.+...+|.++++|+.+++.+|.+....+.+|.++.++..+....+.. ......+|.++
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 99999999999 88888888999999999999999999888889999988888887765322 22233446666
Q ss_pred cccc-eeecccccc-cccc-CCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCc
Q 037792 178 ASLQ-ILNISENNL-SGSM-ISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPI 254 (558)
Q Consensus 178 ~~L~-~L~L~~n~i-~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~ 254 (558)
..|+ .+.+..... .... .......++..+.+.++-.. .....+.. .+++|+.+++++|.++...
T Consensus 176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~------------~~~~L~~l~L~~n~i~~I~ 242 (329)
T 3sb4_A 176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRD------------YMPNLVSLDISKTNATTIP 242 (329)
T ss_dssp CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHH------------HCTTCCEEECTTBCCCEEC
T ss_pred cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHH------------hcCCCeEEECCCCCcceec
Confidence 6666 444433211 1100 11114566777777765322 22222221 1467778888888888777
Q ss_pred hhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccc
Q 037792 255 PHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGAL 334 (558)
Q Consensus 255 ~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (558)
+.+|.+|++|+.+++.+| ++...+.+|.+
T Consensus 243 ~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~-------------------------------------------------- 271 (329)
T 3sb4_A 243 DFTFAQKKYLLKIKLPHN-LKTIGQRVFSN-------------------------------------------------- 271 (329)
T ss_dssp TTTTTTCTTCCEEECCTT-CCEECTTTTTT--------------------------------------------------
T ss_pred HhhhhCCCCCCEEECCcc-cceehHHHhhC--------------------------------------------------
Confidence 888999999999999987 65333444444
Q ss_pred eeeeeecccccccccchhhcccC-EEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeC
Q 037792 335 VAVNFMTKNRYESYKGDILELMA-GLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDL 409 (558)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 409 (558)
+.+|+ .+++.+ .++...+.+|.++++|+++++++|.++.+.+.+|.++++|+.++.
T Consensus 272 ------------------~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 272 ------------------CGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ------------------CTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ------------------ChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 67888 999988 787677899999999999999999999888889999999999874
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.8e-17 Score=144.94 Aligned_cols=113 Identities=25% Similarity=0.311 Sum_probs=102.6
Q ss_pred hcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEe
Q 037792 353 LELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFD 432 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~ 432 (558)
.++++.|++++|.++ .+|..|..+++|++|+|++|.+++..+..|.++++|++|+|++|.|+...|..|..+++|++|+
T Consensus 30 ~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 30 PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEE
Confidence 467899999999998 6778999999999999999999988888999999999999999999988888999999999999
Q ss_pred cCCCCCcCCCCC-CcccCCCCcccccCCCCCCCCC
Q 037792 433 VSYNNLSGPIPD-KEQFSTFDESSYRGNLFLCGPA 466 (558)
Q Consensus 433 l~~N~l~~~~p~-~~~~~~l~~~~~~~N~~~C~~~ 466 (558)
+++|+++...+. ...++.++.+++.+||+.|+|.
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 109 LHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 999999976654 4567889999999999999995
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.2e-17 Score=145.97 Aligned_cols=132 Identities=21% Similarity=0.273 Sum_probs=113.5
Q ss_pred CEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhh
Q 037792 241 RTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVE 320 (558)
Q Consensus 241 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (558)
+.++++++.++ .+|..+. ++|++|++++|+++ .+|..+.+
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~------------------------------------ 52 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSN------------------------------------ 52 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGG------------------------------------
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhc------------------------------------
Confidence 56777778777 3454432 58999999999987 55555544
Q ss_pred hhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhc
Q 037792 321 LLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSN 400 (558)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 400 (558)
+++|+.|++++|.+++..+..|.++++|++|+|++|.+++..|..|.+
T Consensus 53 --------------------------------l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~ 100 (193)
T 2wfh_A 53 --------------------------------YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDG 100 (193)
T ss_dssp --------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT
T ss_pred --------------------------------ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCC
Confidence 678999999999999888889999999999999999999888889999
Q ss_pred cccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCC
Q 037792 401 LKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD 444 (558)
Q Consensus 401 l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 444 (558)
+++|+.|+|++|.|+...+..|..+++|+.|++++|++.|.+..
T Consensus 101 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 101 LKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence 99999999999999988777899999999999999999987764
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-16 Score=143.73 Aligned_cols=115 Identities=26% Similarity=0.356 Sum_probs=105.1
Q ss_pred hcccCEEEccCCCCCCCCCc-cccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEE
Q 037792 353 LELMAGLDLSNNELTGDIPS-EIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTF 431 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L 431 (558)
..+++.|++++|.+++..+. .|..+++|++|+|++|.+++..|..|.++++|++|+|++|+|++..+..|..+++|++|
T Consensus 28 ~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 34789999999999977664 58999999999999999999889999999999999999999999999999999999999
Q ss_pred ecCCCCCcCCCCC-CcccCCCCcccccCCCCCCCCCC
Q 037792 432 DVSYNNLSGPIPD-KEQFSTFDESSYRGNLFLCGPAI 467 (558)
Q Consensus 432 ~l~~N~l~~~~p~-~~~~~~l~~~~~~~N~~~C~~~~ 467 (558)
++++|++++..|. ...++.++.+++++|++.|+|++
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp ECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred ECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 9999999998776 56678899999999999999963
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-16 Score=150.54 Aligned_cols=151 Identities=19% Similarity=0.254 Sum_probs=131.4
Q ss_pred CCcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCC
Q 037792 4 TSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFS 83 (558)
Q Consensus 4 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 83 (558)
+..+++|++|++++|.++ .+| .+. .+++|++|++++|.+++..+ +.++++|++|++++|+++ .++.. .. ++
T Consensus 37 ~~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~-~l~~~--~~-~~ 107 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQ-SLA-GMQ-FFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLK-NLNGI--PS-AC 107 (263)
T ss_dssp HHHHTTCSEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCS-CCTTC--CC-SS
T ss_pred hhhcCcCcEEECcCCCcc-cch-HHh-hCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccC-CcCcc--cc-Cc
Confidence 356789999999999998 788 444 48999999999999996544 999999999999999998 56652 23 89
Q ss_pred CCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEccc
Q 037792 84 LEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSK 163 (558)
Q Consensus 84 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 163 (558)
|++|++++|.+++. +.+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++
T Consensus 108 L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 108 LSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTG 181 (263)
T ss_dssp CCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEE
T ss_pred ccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCC
Confidence 99999999999863 4699999999999999999865 3688999999999999999966 6688999999999999
Q ss_pred CcCccc
Q 037792 164 NLLEGN 169 (558)
Q Consensus 164 n~l~~~ 169 (558)
|++...
T Consensus 182 N~~~~~ 187 (263)
T 1xeu_A 182 QKCVNE 187 (263)
T ss_dssp EEEECC
T ss_pred CcccCC
Confidence 998754
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.8e-17 Score=175.78 Aligned_cols=191 Identities=18% Similarity=0.156 Sum_probs=112.0
Q ss_pred CCccEEEccCCcCCCCCChhhhhcCCCccEE-----EccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCC
Q 037792 8 HGLHSLDISRNSFSGKLPQNMGIVLPKLVYM-----NISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCF 82 (558)
Q Consensus 8 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L-----~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 82 (558)
++++.|++..|.+. .++..... ...|+.+ +++.|.+. ..+..+..+++|++|+|++|.+. .+|..++ .++
T Consensus 173 ~~~~~l~L~~n~~~-~~~~~~l~-~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~ 247 (727)
T 4b8c_D 173 PLTPKIELFANGKD-EANQALLQ-HKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIF-KYD 247 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGG-GCC
T ss_pred CccceEEeeCCCCC-cchhhHhh-cCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhc-CCC
Confidence 45778888888877 45544332 1222222 22233333 45677888889999999999888 7887764 788
Q ss_pred CCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcc
Q 037792 83 SLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMS 162 (558)
Q Consensus 83 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 162 (558)
+|++|+|++|.++ .+|..|.++++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..|+.+++|+.|+|+
T Consensus 248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence 8999999999888 67788888999999999999988 56888888899999999999887 667778888999999999
Q ss_pred cCcCcccchhhhcCCc-ccceeeccccccccccCCCcCCCCccEEEccCC
Q 037792 163 KNLLEGNIPVQFNNLA-SLQILNISENNLSGSMISTLNLSSVEHLYLQNN 211 (558)
Q Consensus 163 ~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n 211 (558)
+|.+.+..|..+..+. .+..+++++|.+++..+ ..|+.|+++.|
T Consensus 325 ~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p-----~~l~~l~l~~n 369 (727)
T 4b8c_D 325 GNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP-----HERRFIEINTD 369 (727)
T ss_dssp TSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC-----CC---------
T ss_pred CCccCCCChHHHhhcchhhhHHhhccCcccCcCc-----cccceeEeecc
Confidence 9998887777775543 22346788888776443 45667777666
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.65 E-value=5.1e-16 Score=136.85 Aligned_cols=135 Identities=22% Similarity=0.245 Sum_probs=108.7
Q ss_pred CCCcCEEEccCCcCC-CCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCccc
Q 037792 237 HSNLRTLLLRGNYLQ-GPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYY 315 (558)
Q Consensus 237 ~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (558)
.+++++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~------------------------------- 69 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPK------------------------------- 69 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCC-------------------------------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhcc-------------------------------
Confidence 467788888888877 56677778888899999998888632 22211
Q ss_pred chhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccc-
Q 037792 316 NSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSI- 394 (558)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~- 394 (558)
+++|+.|++++|.+++.+|..+..+++|++|++++|.+++..
T Consensus 70 -------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 112 (168)
T 2ell_A 70 -------------------------------------LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDIST 112 (168)
T ss_dssp -------------------------------------CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGG
T ss_pred -------------------------------------CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchh
Confidence 678899999999998778888888999999999999998653
Q ss_pred hhhhhccccCCeEeCCCCcccccCc---hhcccCCCCCEEecCCCCCcCC
Q 037792 395 PESFSNLKMIESLDLSHNKLNGQIP---PQLTELHSLSTFDVSYNNLSGP 441 (558)
Q Consensus 395 ~~~~~~l~~L~~L~Ls~N~i~~~~~---~~l~~l~~L~~L~l~~N~l~~~ 441 (558)
+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|++...
T Consensus 113 ~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 113 LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 2778899999999999999986665 5788999999999999988743
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.6e-15 Score=149.78 Aligned_cols=316 Identities=8% Similarity=0.048 Sum_probs=172.4
Q ss_pred CCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhh
Q 037792 23 KLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNY 102 (558)
Q Consensus 23 ~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~ 102 (558)
+|....|.+|.+|+.+.+.. .++.+...+|.++.+|+.+++.++ ++ .++...|.++.+|+.+.+..+ +......+|
T Consensus 61 sIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF 136 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGVEAF 136 (394)
T ss_dssp EECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred EhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecceee
Confidence 34444555555666666653 244444455666666666666433 33 455555555555555554432 222333344
Q ss_pred cCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccce
Q 037792 103 MNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQI 182 (558)
Q Consensus 103 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 182 (558)
.++..++...... +......+|.++++|+.+.+..+. .......|.++.+|+.+++..+ +..+...+|.++..|+.
T Consensus 137 ~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~ 212 (394)
T 4fs7_A 137 KGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLEN 212 (394)
T ss_dssp TTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCB
T ss_pred ecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccce
Confidence 4443322222211 122333455666666666665432 2244455666666666666544 33344455566666666
Q ss_pred eeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCC
Q 037792 183 LNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLR 262 (558)
Q Consensus 183 L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~ 262 (558)
+.+..+... .....+...+|+.+.+... ++.....++..+ ..++.+.+..+... .....|..+.
T Consensus 213 i~~~~~~~~-i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~-------------~~l~~~~~~~~~~~-i~~~~F~~~~ 276 (394)
T 4fs7_A 213 MEFPNSLYY-LGDFALSKTGVKNIIIPDS-FTELGKSVFYGC-------------TDLESISIQNNKLR-IGGSLFYNCS 276 (394)
T ss_dssp CCCCTTCCE-ECTTTTTTCCCCEEEECTT-CCEECSSTTTTC-------------SSCCEEEECCTTCE-ECSCTTTTCT
T ss_pred eecCCCceE-eehhhcccCCCceEEECCC-ceeccccccccc-------------ccceeEEcCCCcce-eecccccccc
Confidence 655544322 2222234455565555432 222233344443 44555555444332 4455677778
Q ss_pred CCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecc
Q 037792 263 KLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTK 342 (558)
Q Consensus 263 ~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (558)
.++.+....+.+. ...+..
T Consensus 277 ~l~~~~~~~~~i~---~~~F~~---------------------------------------------------------- 295 (394)
T 4fs7_A 277 GLKKVIYGSVIVP---EKTFYG---------------------------------------------------------- 295 (394)
T ss_dssp TCCEEEECSSEEC---TTTTTT----------------------------------------------------------
T ss_pred ccceeccCceeec---cccccc----------------------------------------------------------
Confidence 8887776554321 011111
Q ss_pred cccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhc
Q 037792 343 NRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQL 422 (558)
Q Consensus 343 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l 422 (558)
+.+|+.+.+..+ ++.....+|.++.+|+.++|..+ ++.+...+|.++++|+.+++..+ ++.+...+|
T Consensus 296 ----------~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF 362 (394)
T 4fs7_A 296 ----------CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAF 362 (394)
T ss_dssp ----------CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTB
T ss_pred ----------cccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHh
Confidence 456777777654 55455667888888888888644 66556678888888888888776 666777788
Q ss_pred ccCCCCCEEecCCC
Q 037792 423 TELHSLSTFDVSYN 436 (558)
Q Consensus 423 ~~l~~L~~L~l~~N 436 (558)
.++++|+.+++..+
T Consensus 363 ~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 363 QGCINLKKVELPKR 376 (394)
T ss_dssp TTCTTCCEEEEEGG
T ss_pred hCCCCCCEEEECCC
Confidence 88888888887544
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.63 E-value=7.2e-16 Score=132.94 Aligned_cols=129 Identities=22% Similarity=0.265 Sum_probs=103.8
Q ss_pred CCCcCEEEccCCcCC-CCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCccc
Q 037792 237 HSNLRTLLLRGNYLQ-GPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYY 315 (558)
Q Consensus 237 ~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (558)
.++++.|++++|.++ +.+|..+..+++|+.|++++|++++. ..+..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~------------------------------- 62 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPK------------------------------- 62 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCC-------------------------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhc-------------------------------
Confidence 467788888888887 56777788888999999999888643 22221
Q ss_pred chhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCcc-c
Q 037792 316 NSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGS-I 394 (558)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~ 394 (558)
+++|+.|++++|.+++.+|..+..+++|++|++++|.+++. .
T Consensus 63 -------------------------------------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~ 105 (149)
T 2je0_A 63 -------------------------------------LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLST 105 (149)
T ss_dssp -------------------------------------CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHH
T ss_pred -------------------------------------CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHH
Confidence 67888999999999876788788899999999999999864 3
Q ss_pred hhhhhccccCCeEeCCCCcccccCc---hhcccCCCCCEEecCC
Q 037792 395 PESFSNLKMIESLDLSHNKLNGQIP---PQLTELHSLSTFDVSY 435 (558)
Q Consensus 395 ~~~~~~l~~L~~L~Ls~N~i~~~~~---~~l~~l~~L~~L~l~~ 435 (558)
+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 106 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 106 IEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred HHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 4788999999999999999987666 5788899999998864
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.63 E-value=8.1e-15 Score=147.38 Aligned_cols=240 Identities=10% Similarity=0.104 Sum_probs=126.9
Q ss_pred CCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEE
Q 037792 8 HGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWL 87 (558)
Q Consensus 8 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 87 (558)
+.++.+.+.. .++ .|+...|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .++ .++...|.++++|+.+
T Consensus 113 ~~l~~i~ip~-~i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 113 KGYNEIILPN-SVK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKKA 185 (401)
T ss_dssp SSCSEEECCT-TCC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCEE
T ss_pred CCccEEEECC-ccC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCee
Confidence 4455555543 344 5555555543 5666666544 444445555553 466666654 444 4555555666666666
Q ss_pred EccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCc
Q 037792 88 DLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLE 167 (558)
Q Consensus 88 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (558)
++.+|.++......|. ..+|+.+.+..+ +..+...+|.++++|+.+++..+ ++.....+|.+ .+|+.+.+ .+.+.
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~ 260 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVT 260 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCC
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCcc
Confidence 6666665544444444 456666666533 44455556666666666666543 44344455555 45666666 33344
Q ss_pred ccchhhhcCCcccceeeccccccc-----cccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcC
Q 037792 168 GNIPVQFNNLASLQILNISENNLS-----GSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLR 241 (558)
Q Consensus 168 ~~~~~~~~~l~~L~~L~L~~n~i~-----~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~ 241 (558)
.+...+|.++++|+.+.+.++.+. .+....+ .+++|+.+.+.+ .++.....+|..|++|+.+.+..+
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~------ 333 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN------ 333 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT------
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc------
Confidence 444555666666666666555443 2333333 556666666653 344444555555544444444322
Q ss_pred EEEccCCcCCCCchhhccCCCCCCEEEcccCcCc
Q 037792 242 TLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLN 275 (558)
Q Consensus 242 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 275 (558)
++.....+|.++ +|+.+++.+|.+.
T Consensus 334 --------l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 334 --------VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp --------CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred --------ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 332334455555 5666666555443
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.3e-15 Score=133.86 Aligned_cols=92 Identities=23% Similarity=0.241 Sum_probs=77.9
Q ss_pred hcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEe
Q 037792 353 LELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFD 432 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~ 432 (558)
+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence 67788888888888866667788889999999999999877777788889999999999999877777778889999999
Q ss_pred cCCCCCcCCCCC
Q 037792 433 VSYNNLSGPIPD 444 (558)
Q Consensus 433 l~~N~l~~~~p~ 444 (558)
+++|++++.+|.
T Consensus 131 l~~N~~~~~~~~ 142 (177)
T 2o6r_A 131 LHTNPWDCSCPR 142 (177)
T ss_dssp CCSSCBCCCHHH
T ss_pred ecCCCeeccCcc
Confidence 999999887774
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.2e-15 Score=132.75 Aligned_cols=132 Identities=18% Similarity=0.131 Sum_probs=59.8
Q ss_pred CCccEEEccCCcCC-CCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCee
Q 037792 33 PKLVYMNISKNSFE-GNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWAL 111 (558)
Q Consensus 33 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 111 (558)
++|++|++++|.++ +.+|..+..+++|++|++++|.++ .+ ..+..+++|++|++++|.+.+..+..+.++++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 34444444444443 333434444444444444444444 22 122344444444444444443333444444444444
Q ss_pred ecccccccccc-chhhcCCCCCCEEEccCCcCCCCCc---ccccCCCCCcEEEcccCcCc
Q 037792 112 YLYNNNFSGKI-KDGLLRSTELMVLDISNNRLSGHIP---SWMGNFSTLQILSMSKNLLE 167 (558)
Q Consensus 112 ~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~ 167 (558)
++++|.+++.. +..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 44444444321 1344455555555555555553332 24455555555555555544
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-14 Score=146.85 Aligned_cols=327 Identities=10% Similarity=0.033 Sum_probs=228.8
Q ss_pred CCCcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCC
Q 037792 3 LTSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCF 82 (558)
Q Consensus 3 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 82 (558)
.|..|++|+.+.+.. .++ .|+...|.+|++|+.+++..+ ++.+...+|.++.+|+.+.+..+ ++ .+....|.++.
T Consensus 66 AF~~c~~L~~i~lp~-~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~~aF~~~~ 140 (394)
T 4fs7_A 66 AFQGCRKVTEIKIPS-TVR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGVEAFKGCD 140 (394)
T ss_dssp TTTTCTTEEEEECCT-TCC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTTTTTTCC
T ss_pred HhhCCCCceEEEeCC-Ccc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecceeeeccc
Confidence 478899999999975 477 899999999999999999865 66566788999999999888654 44 56666666665
Q ss_pred CCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcc
Q 037792 83 SLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMS 162 (558)
Q Consensus 83 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 162 (558)
.++....... ......+|.++++|+.+.+.++. ..+...+|.++.+|+.+++..+ ++......|.++..|+.+.+.
T Consensus 141 ~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 141 FKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp CSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred ccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence 4443333322 22445689999999999997654 4466778889999999999776 555667788899999998887
Q ss_pred cCcCcccchhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcC
Q 037792 163 KNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLR 241 (558)
Q Consensus 163 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~ 241 (558)
.+... . ........+|+.+.+... ++......+ .+..++.+.+..+... ....+|..+..++.+...
T Consensus 217 ~~~~~-i-~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~-------- 284 (394)
T 4fs7_A 217 NSLYY-L-GDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYG-------- 284 (394)
T ss_dssp TTCCE-E-CTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEEC--------
T ss_pred CCceE-e-ehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccC--------
Confidence 66543 2 233344578888888654 333444444 7888999998876543 555566666655555433
Q ss_pred EEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhh
Q 037792 242 TLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVEL 321 (558)
Q Consensus 242 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (558)
... .....+..+.+|+.+.+.++ ++.....+|.+
T Consensus 285 -----~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~------------------------------------- 318 (394)
T 4fs7_A 285 -----SVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFES------------------------------------- 318 (394)
T ss_dssp -----SSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTT-------------------------------------
T ss_pred -----cee---eccccccccccccccccccc-cceechhhhcC-------------------------------------
Confidence 222 22346777888888887654 32111222222
Q ss_pred hccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhcc
Q 037792 322 LLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNL 401 (558)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 401 (558)
+.+|+.+++.++ ++.....+|.++.+|+.+++..+ ++.+...+|.++
T Consensus 319 -------------------------------c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C 365 (394)
T 4fs7_A 319 -------------------------------CTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGC 365 (394)
T ss_dssp -------------------------------CTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTC
T ss_pred -------------------------------CCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCC
Confidence 566777777643 65556678889999999999876 665667789999
Q ss_pred ccCCeEeCCCCcccccCchhcccCCCCCEE
Q 037792 402 KMIESLDLSHNKLNGQIPPQLTELHSLSTF 431 (558)
Q Consensus 402 ~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L 431 (558)
++|+.+++..+ +. .+...|.++++|+.+
T Consensus 366 ~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 366 INLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 99999998765 33 234678888887765
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.61 E-value=2e-14 Score=144.49 Aligned_cols=82 Identities=10% Similarity=0.114 Sum_probs=47.5
Q ss_pred hcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCC-CCCEE
Q 037792 353 LELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELH-SLSTF 431 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~-~L~~L 431 (558)
+++|+.+++.+ .++......|.++++|+.+.|..| ++.+...+|.++ +|+.+++++|.+....+..|.+++ .++.|
T Consensus 299 c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l 375 (401)
T 4fdw_A 299 CPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVI 375 (401)
T ss_dssp CTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEE
T ss_pred CccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEE
Confidence 45566666663 355445556666666666666443 444455566666 666666666666655555565553 55566
Q ss_pred ecCCCC
Q 037792 432 DVSYNN 437 (558)
Q Consensus 432 ~l~~N~ 437 (558)
.+..+.
T Consensus 376 ~vp~~~ 381 (401)
T 4fdw_A 376 RVPAES 381 (401)
T ss_dssp EECGGG
T ss_pred EeCHHH
Confidence 555444
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.59 E-value=3.8e-15 Score=128.35 Aligned_cols=129 Identities=21% Similarity=0.277 Sum_probs=78.8
Q ss_pred cCCCccEEEccCCcCC-CCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCC
Q 037792 6 AQHGLHSLDISRNSFS-GKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSL 84 (558)
Q Consensus 6 ~~~~L~~L~l~~n~l~-~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 84 (558)
..++|+.|++++|.++ +.+|..+. .+++|++|++++|.+++. ..+.++++|++|++++|.+++.+|. .+..+++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L 90 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTD-EFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEV-LAEKCPNL 90 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCT-TCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHH-HHHHCTTC
T ss_pred CCccCeEEEccCCcCChhHHHHHHh-hcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHH-HhhhCCCC
Confidence 3456777777777766 55665433 366777777777776644 5566677777777777777643443 33556677
Q ss_pred CEEEccCCccCcc-CchhhcCCCccCeeeccccccccccc---hhhcCCCCCCEEEcc
Q 037792 85 EWLDLSNNNFVGQ-IFPNYMNLTRLWALYLYNNNFSGKIK---DGLLRSTELMVLDIS 138 (558)
Q Consensus 85 ~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~---~~~~~l~~L~~L~L~ 138 (558)
++|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7777777766642 22456666666666666666654433 345556666666554
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-14 Score=129.63 Aligned_cols=129 Identities=17% Similarity=0.171 Sum_probs=70.3
Q ss_pred ccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEc
Q 037792 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDL 89 (558)
Q Consensus 10 L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 89 (558)
.+.++++++.++ .+|..++ ++|++|++++|.+++..+..+.++++|++|++++|.++ .++...+..+++|++|++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCCCCc-cCCCCCC---CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEEC
Confidence 456777777776 6665442 46677777777776555555666666666666666666 444444455555555555
Q ss_pred cCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCC
Q 037792 90 SNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLS 143 (558)
Q Consensus 90 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 143 (558)
++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 555555433333444444444444444444333333333444444444444333
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.4e-16 Score=168.92 Aligned_cols=226 Identities=22% Similarity=0.285 Sum_probs=106.3
Q ss_pred CCCccEEEccCCcCCCCCchhhhCCCCCCEEE-----cccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCC
Q 037792 32 LPKLVYMNISKNSFEGNIPSSIGKMQGLRLLD-----VSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLT 106 (558)
Q Consensus 32 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~-----L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~ 106 (558)
-++++.|++.+|.+.. .+..+.....|+.+. +..|.+. ++...+..+++|+.|+|++|.+. .++..+.+++
T Consensus 172 ~~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~ 247 (727)
T 4b8c_D 172 TPLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYD 247 (727)
T ss_dssp -----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCC
T ss_pred CCccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCC-CCChhhcCCC
Confidence 3567888888888774 343333333333322 2233333 44555677888888888888887 5566667888
Q ss_pred ccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeecc
Q 037792 107 RLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNIS 186 (558)
Q Consensus 107 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 186 (558)
+|++|+|++|.++ .+|..+..+++|+.|+|++|.++ .+|..|.++++|++|+|++|.+. .+|..|..+++|+.|+|+
T Consensus 248 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 248 FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECT
T ss_pred CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCC
Confidence 8888888888887 66777888888888888888888 66878888888888888888887 567778888888888888
Q ss_pred ccccccccCCCcC-C-CCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCC
Q 037792 187 ENNLSGSMISTLN-L-SSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKL 264 (558)
Q Consensus 187 ~n~i~~~~~~~~~-~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 264 (558)
+|.+++.++..+. . .....+++++|.+++.+|.. |+.|+++.|. .+......+.+..+..+..+..+
T Consensus 325 ~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~-----~~~~~~~~l~~~~~~~~~~l~~~ 393 (727)
T 4b8c_D 325 GNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDG-----EPQREYDSLQQSTEHLATDLAKR 393 (727)
T ss_dssp TSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--------------------------------------------
T ss_pred CCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeeccc-----ccccccCCccccccchhhccccc
Confidence 8888776555441 1 12234677788877665533 3334443330 00001113333344445556666
Q ss_pred CEEEcccCcCc
Q 037792 265 GIMDISHNRLN 275 (558)
Q Consensus 265 ~~L~l~~n~l~ 275 (558)
....++.|-+.
T Consensus 394 ~~~~ls~Nil~ 404 (727)
T 4b8c_D 394 TFTVLSYNTLC 404 (727)
T ss_dssp --------CCC
T ss_pred ceeeeeccccc
Confidence 66677777654
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-14 Score=128.30 Aligned_cols=130 Identities=19% Similarity=0.236 Sum_probs=74.6
Q ss_pred CcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCC
Q 037792 5 SAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSL 84 (558)
Q Consensus 5 ~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 84 (558)
.++++|++|++++|.++ .+|. +....++|++|++++|.+++. ..+.++++|++|++++|.++ .+|+.++..+++|
T Consensus 16 ~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L 90 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDL 90 (176)
T ss_dssp ECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTC
T ss_pred CCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCC
Confidence 45666777777777776 5543 333344677777777776643 45666667777777777666 4555555566666
Q ss_pred CEEEccCCccCccCch--hhcCCCccCeeeccccccccccch----hhcCCCCCCEEEccCCc
Q 037792 85 EWLDLSNNNFVGQIFP--NYMNLTRLWALYLYNNNFSGKIKD----GLLRSTELMVLDISNNR 141 (558)
Q Consensus 85 ~~L~l~~n~i~~~~~~--~~~~l~~L~~L~l~~n~i~~~~~~----~~~~l~~L~~L~L~~n~ 141 (558)
++|++++|.+.. .+. .+..+++|+.|++++|.+.. .+. .+..+++|+.|++++|.
T Consensus 91 ~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 91 TELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECC
T ss_pred CEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCC
Confidence 666666666643 222 45555555555555555542 222 24444444444444443
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.52 E-value=4.2e-14 Score=124.52 Aligned_cols=107 Identities=21% Similarity=0.270 Sum_probs=61.3
Q ss_pred cCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCC
Q 037792 356 MAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSY 435 (558)
Q Consensus 356 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~ 435 (558)
.+.+++++|.++ .+|..+. ++|++|+|++|.|++..|..|.++++|++|+|++|+|++..+..|..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 345666666665 3443332 5566666666666655555566666666666666666655555555666666666666
Q ss_pred CCCcCCCCC-CcccCCCCcccccCCCCCCCC
Q 037792 436 NNLSGPIPD-KEQFSTFDESSYRGNLFLCGP 465 (558)
Q Consensus 436 N~l~~~~p~-~~~~~~l~~~~~~~N~~~C~~ 465 (558)
|++++..+. ...+..++.+++++||+.|+|
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 666654443 344555556666666666665
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.51 E-value=3.8e-14 Score=125.75 Aligned_cols=86 Identities=17% Similarity=0.184 Sum_probs=64.1
Q ss_pred hcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchh--hhhccccCCeEeCCCCcccccCch----hcccCC
Q 037792 353 LELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPE--SFSNLKMIESLDLSHNKLNGQIPP----QLTELH 426 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~l~~L~~L~Ls~N~i~~~~~~----~l~~l~ 426 (558)
+++|+.|++++|.+++..+..+..+++|++|++++|.++. +|. .+..+++|+.|++++|.++. .|. .+..++
T Consensus 63 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~ 140 (176)
T 1a9n_A 63 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVP 140 (176)
T ss_dssp CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCT
T ss_pred CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCC
Confidence 5677778888887775555556778888888888888863 444 67788888888888888874 344 477888
Q ss_pred CCCEEecCCCCCcC
Q 037792 427 SLSTFDVSYNNLSG 440 (558)
Q Consensus 427 ~L~~L~l~~N~l~~ 440 (558)
+|+.||+++|+...
T Consensus 141 ~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 141 QVRVLDFQKVKLKE 154 (176)
T ss_dssp TCSEETTEECCHHH
T ss_pred ccceeCCCcCCHHH
Confidence 88888888887653
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.51 E-value=5e-14 Score=124.04 Aligned_cols=93 Identities=23% Similarity=0.225 Sum_probs=86.5
Q ss_pred hcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEe
Q 037792 353 LELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFD 432 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~ 432 (558)
.++++.|++++|.+++..|..|..+++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|+
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence 46789999999999988899999999999999999999988888899999999999999999988888899999999999
Q ss_pred cCCCCCcCCCCCC
Q 037792 433 VSYNNLSGPIPDK 445 (558)
Q Consensus 433 l~~N~l~~~~p~~ 445 (558)
+++|++++.++..
T Consensus 109 L~~N~~~c~c~~l 121 (170)
T 3g39_A 109 LLNNPWDCACSDI 121 (170)
T ss_dssp CCSSCBCTTBGGG
T ss_pred eCCCCCCCCchhH
Confidence 9999999988753
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-13 Score=122.09 Aligned_cols=106 Identities=20% Similarity=0.270 Sum_probs=53.3
Q ss_pred CEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCC
Q 037792 357 AGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYN 436 (558)
Q Consensus 357 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N 436 (558)
+.+++++|.++ .+|..+. ++|++|+|++|.+++..|..|.++++|+.|+|++|+|++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 34555555554 3333332 45555555555555544555555555555555555555444444455555555555555
Q ss_pred CCcCCCCC-CcccCCCCcccccCCCCCCCC
Q 037792 437 NLSGPIPD-KEQFSTFDESSYRGNLFLCGP 465 (558)
Q Consensus 437 ~l~~~~p~-~~~~~~l~~~~~~~N~~~C~~ 465 (558)
++++..+. ...++.++.+++++|++.|.|
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 55543333 333445555555555555554
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-15 Score=138.56 Aligned_cols=132 Identities=21% Similarity=0.266 Sum_probs=66.0
Q ss_pred hhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCC
Q 037792 52 SIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTE 131 (558)
Q Consensus 52 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~ 131 (558)
.+.++++|++|++++|.++ .+| . +..+++|++|++++|.+. .++..+..+++|+.|++++|.+++ .+ .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~-~l~-~-~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIE-KIS-S-LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEES-CCC-C-HHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCc-ccc-c-cccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCC
Confidence 4555555555555555554 244 2 244555555555555554 233444444555555555555543 22 3445555
Q ss_pred CCEEEccCCcCCCCCc-ccccCCCCCcEEEcccCcCcccchh----------hhcCCcccceeeccccccc
Q 037792 132 LMVLDISNNRLSGHIP-SWMGNFSTLQILSMSKNLLEGNIPV----------QFNNLASLQILNISENNLS 191 (558)
Q Consensus 132 L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~----------~~~~l~~L~~L~L~~n~i~ 191 (558)
|+.|++++|.++...+ ..+..+++|++|++++|.+.+..|. .+..+++|+.|+ ++.++
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 5555555555553221 2455555566666666655433332 255666677665 44443
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-13 Score=121.44 Aligned_cols=93 Identities=25% Similarity=0.243 Sum_probs=85.4
Q ss_pred hcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEe
Q 037792 353 LELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFD 432 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~ 432 (558)
.++|+.|++++|.+++..|..|..+++|++|+|++|++++..+..|.++++|++|+|++|+|++..+..|..+++|++|+
T Consensus 32 ~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 32 PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 46789999999999988899999999999999999999987777889999999999999999987777799999999999
Q ss_pred cCCCCCcCCCCCC
Q 037792 433 VSYNNLSGPIPDK 445 (558)
Q Consensus 433 l~~N~l~~~~p~~ 445 (558)
+++|++.+.++..
T Consensus 112 L~~N~~~c~~~~~ 124 (174)
T 2r9u_A 112 LYNNPWDCECRDI 124 (174)
T ss_dssp CCSSCBCTTBGGG
T ss_pred eCCCCcccccccH
Confidence 9999999877643
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.46 E-value=2.3e-15 Score=136.52 Aligned_cols=153 Identities=21% Similarity=0.273 Sum_probs=103.1
Q ss_pred cCCCccEEEccCCcCCCCCCh------hhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHh
Q 037792 6 AQHGLHSLDISRNSFSGKLPQ------NMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVI 79 (558)
Q Consensus 6 ~~~~L~~L~l~~n~l~~~~p~------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 79 (558)
....++.++++.+.+.|.+|. .+.. +++|++|++++|.+++ +| .+.++++|++|++++|.++ .+|..+ .
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~-l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~-~ 90 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLST-LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD-A 90 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHH-TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH-H
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhc-CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh-h
Confidence 345566666666666655554 4444 7788888888877775 45 7777778888888888777 566533 5
Q ss_pred cCCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccccc-hhhcCCCCCCEEEccCCcCCCCCcc----------
Q 037792 80 NCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIK-DGLLRSTELMVLDISNNRLSGHIPS---------- 148 (558)
Q Consensus 80 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~---------- 148 (558)
.+++|++|++++|++++ + +.+..+++|++|++++|.++.... ..+..+++|++|++++|.+.+..|.
T Consensus 91 ~~~~L~~L~L~~N~l~~-l-~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 168 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168 (198)
T ss_dssp HHHHCSEEEEEEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH
T ss_pred cCCcCCEEECcCCcCCc-C-CccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHH
Confidence 56778888888877775 2 357777778888888887764332 4567777888888888777654443
Q ss_pred cccCCCCCcEEEcccCcCc
Q 037792 149 WMGNFSTLQILSMSKNLLE 167 (558)
Q Consensus 149 ~~~~l~~L~~L~L~~n~l~ 167 (558)
.+..+++|+.|+ ++.++
T Consensus 169 ~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 169 VVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHCSSCSEEC--CGGGT
T ss_pred HHHhCCCcEEEC--CcccC
Confidence 256677777776 44443
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-11 Score=124.90 Aligned_cols=80 Identities=9% Similarity=0.235 Sum_probs=38.1
Q ss_pred cccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEec
Q 037792 354 ELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDV 433 (558)
Q Consensus 354 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l 433 (558)
.+|+.+.+. +.++......|.++.+|++++|..+ ++.+...+|.++.+|+++.+..+ ++.+...+|.++++|+.+++
T Consensus 288 ~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 288 PALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEY 364 (394)
T ss_dssp TTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEE
T ss_pred cccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEE
Confidence 344444443 2233233344555555555555432 33333445555555555555433 33344445555555555555
Q ss_pred CCC
Q 037792 434 SYN 436 (558)
Q Consensus 434 ~~N 436 (558)
.++
T Consensus 365 ~~~ 367 (394)
T 4gt6_A 365 SGS 367 (394)
T ss_dssp SSC
T ss_pred CCc
Confidence 544
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-11 Score=123.77 Aligned_cols=320 Identities=8% Similarity=0.097 Sum_probs=162.4
Q ss_pred CChhhhhcCC-CccEEEccCCcCCCCCchhhhCCCCCCEEEccccc---CCccchHHHHhcCCCCCEEEccCCccCccCc
Q 037792 24 LPQNMGIVLP-KLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNN---FAGELSQSLVINCFSLEWLDLSNNNFVGQIF 99 (558)
Q Consensus 24 ~p~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~ 99 (558)
|+...|.++. .|+.+.+..+ ++.+...+|.++.+|+.+.+..|. ++ .+....|.++.+|+.+.+..+ ++....
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~ 130 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDS 130 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehh
Confidence 4444444443 3666666533 444555566666666666665543 33 455555555666665555432 333334
Q ss_pred hhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcc
Q 037792 100 PNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLAS 179 (558)
Q Consensus 100 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 179 (558)
..|.++.+|+.+.+..+ +..+...+|..+..|+.+.+..+ ++.....+|.+ ..|+.+.+..+-.. ....+|..+.+
T Consensus 131 ~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~ 206 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFA 206 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTT
T ss_pred hhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccc
Confidence 45566666666665433 22244445555566666665443 33233344433 34555555443222 33445555555
Q ss_pred cceeeccccccccccCCCc--------------CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEc
Q 037792 180 LQILNISENNLSGSMISTL--------------NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLL 245 (558)
Q Consensus 180 L~~L~L~~n~i~~~~~~~~--------------~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l 245 (558)
++................+ ....+..+.+.. .++.....+|..+.. |+.+.+
T Consensus 207 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~-------------L~~i~l 272 (394)
T 4gt6_A 207 LSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAY-------------LASVKM 272 (394)
T ss_dssp CCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSS-------------CCEEEC
T ss_pred cceecccccccccccceeecccccccccccccccccccceEEcCC-cceEcccceeeeccc-------------ccEEec
Confidence 5555444332221111111 011112222211 111122233333333 333333
Q ss_pred cCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccC
Q 037792 246 RGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDG 325 (558)
Q Consensus 246 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (558)
.++.. .....+|.++++|+.+.+.. .++.....+|.+
T Consensus 273 p~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~----------------------------------------- 309 (394)
T 4gt6_A 273 PDSVV-SIGTGAFMNCPALQDIEFSS-RITELPESVFAG----------------------------------------- 309 (394)
T ss_dssp CTTCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTT-----------------------------------------
T ss_pred ccccc-eecCcccccccccccccCCC-cccccCceeecC-----------------------------------------
Confidence 33222 23445666677777776642 222111112221
Q ss_pred CCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCC
Q 037792 326 NDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIE 405 (558)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 405 (558)
+.+|+.+++..+ ++.....+|.++.+|+++.+..+ ++.+...+|.++++|+
T Consensus 310 ---------------------------c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~ 360 (394)
T 4gt6_A 310 ---------------------------CISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALN 360 (394)
T ss_dssp ---------------------------CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCC
T ss_pred ---------------------------CCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCC
Confidence 577888888764 66566778999999999999755 6666678999999999
Q ss_pred eEeCCCCcccccCchhcccCCCCCEEecCCCCCc
Q 037792 406 SLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLS 439 (558)
Q Consensus 406 ~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~ 439 (558)
.+++.++.... ..+.....|+.+.+..|.+.
T Consensus 361 ~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 361 NIEYSGSRSQW---NAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp EEEESSCHHHH---HTCBCCCCC-----------
T ss_pred EEEECCceeeh---hhhhccCCCCEEEeCCCCEE
Confidence 99999987652 45777888999988776553
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.3e-14 Score=140.01 Aligned_cols=167 Identities=19% Similarity=0.157 Sum_probs=90.2
Q ss_pred CCCCEEEcccccCCccchHHHH----hcCCCCCEEEccCCccCccCchhh-cCCCccCeeeccccccccccchhh-----
Q 037792 57 QGLRLLDVSSNNFAGELSQSLV----INCFSLEWLDLSNNNFVGQIFPNY-MNLTRLWALYLYNNNFSGKIKDGL----- 126 (558)
Q Consensus 57 ~~L~~L~L~~n~l~~~~~~~~~----~~l~~L~~L~l~~n~i~~~~~~~~-~~l~~L~~L~l~~n~i~~~~~~~~----- 126 (558)
++|++|++++|.++......+. ...++|++|++++|.+++.....+ ..+++|++|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4555666666655522111111 112456666666665543222222 234456666666666653333222
Q ss_pred cCCCCCCEEEccCCcCCCC----CcccccCCCCCcEEEcccCcCcccc----hhhhcCCcccceeeccccccccccCCCc
Q 037792 127 LRSTELMVLDISNNRLSGH----IPSWMGNFSTLQILSMSKNLLEGNI----PVQFNNLASLQILNISENNLSGSMISTL 198 (558)
Q Consensus 127 ~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 198 (558)
...++|++|++++|.++.. ++..+..+++|++|+|++|.+.+.. ...+...++|+.|++++|.+++.....+
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 2345666777776666532 2233455666777777777665322 3445566677777777777765332221
Q ss_pred -----CCCCccEEEccCCcCcccchhhhhC
Q 037792 199 -----NLSSVEHLYLQNNALGGSIPNTFFR 223 (558)
Q Consensus 199 -----~~~~L~~L~l~~n~l~~~~~~~~~~ 223 (558)
..++|++|++++|.+++.....+..
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred HHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 3577888888888877655555544
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.8e-12 Score=128.44 Aligned_cols=107 Identities=20% Similarity=0.247 Sum_probs=75.2
Q ss_pred EEEccCC-CCCCCCCccccCccCCCeeeccC-CcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCC
Q 037792 358 GLDLSNN-ELTGDIPSEIGDLQNIHGLNLSH-NFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSY 435 (558)
Q Consensus 358 ~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~ 435 (558)
.++++++ +++ .+|. +..+++|++|+|++ |.+++..+..|.++++|+.|+|++|+|++..|..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4567776 676 4566 77777777777775 777766667777777777777777777777777777777777777777
Q ss_pred CCCcCCCCCCcccCCCCcccccCCCCCCCCC
Q 037792 436 NNLSGPIPDKEQFSTFDESSYRGNLFLCGPA 466 (558)
Q Consensus 436 N~l~~~~p~~~~~~~l~~~~~~~N~~~C~~~ 466 (558)
|+|++..+.......++.+++.+|++.|+|.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLHCSCA 120 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred CccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence 7777655443222236777777777777774
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.4e-12 Score=127.48 Aligned_cols=113 Identities=18% Similarity=0.150 Sum_probs=91.6
Q ss_pred hcccCEEEccC-CCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEE
Q 037792 353 LELMAGLDLSN-NELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTF 431 (558)
Q Consensus 353 l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L 431 (558)
+.+|+.|+|++ |.+++..+..|.++++|++|+|++|+|++..|..|.++++|+.|+|++|+|++.++..+..++ |+.|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 67899999996 999988888999999999999999999999999999999999999999999988777777776 9999
Q ss_pred ecCCCCCcCCCCCCcc--cCCCCcccccCCCCCCCCC
Q 037792 432 DVSYNNLSGPIPDKEQ--FSTFDESSYRGNLFLCGPA 466 (558)
Q Consensus 432 ~l~~N~l~~~~p~~~~--~~~l~~~~~~~N~~~C~~~ 466 (558)
++++|++.+.++..+. +.......+..+.+.|..+
T Consensus 109 ~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~ 145 (347)
T 2ifg_A 109 VLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQ 145 (347)
T ss_dssp ECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSS
T ss_pred EeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCC
Confidence 9999999987663211 1111222334456667553
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.1e-13 Score=135.78 Aligned_cols=183 Identities=16% Similarity=0.164 Sum_probs=113.5
Q ss_pred CCCccEEEccCCcCCCCCchhhhCC-----CCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhh----
Q 037792 32 LPKLVYMNISKNSFEGNIPSSIGKM-----QGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNY---- 102 (558)
Q Consensus 32 l~~L~~L~Ls~n~i~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~---- 102 (558)
+++|++|++++|.++......+... ++|++|+|++|.+++.....+...+++|++|++++|.+++.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4577788888877764433333322 5788888888877644444444456677888888887765443433
Q ss_pred -cCCCccCeeeccccccccc----cchhhcCCCCCCEEEccCCcCCCCC----cccccCCCCCcEEEcccCcCcccc---
Q 037792 103 -MNLTRLWALYLYNNNFSGK----IKDGLLRSTELMVLDISNNRLSGHI----PSWMGNFSTLQILSMSKNLLEGNI--- 170 (558)
Q Consensus 103 -~~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~--- 170 (558)
...++|++|++++|.++.. .+..+...++|++|+|++|.++... +..+...++|+.|+|++|.+++..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2457788888888877642 2334466778888888888776422 344566678888888888876532
Q ss_pred -hhhhcCCcccceeeccccccccccCCCc----CCC--CccEEE--ccCCcCc
Q 037792 171 -PVQFNNLASLQILNISENNLSGSMISTL----NLS--SVEHLY--LQNNALG 214 (558)
Q Consensus 171 -~~~~~~l~~L~~L~L~~n~i~~~~~~~~----~~~--~L~~L~--l~~n~l~ 214 (558)
...+...++|++|++++|.++......+ ... .++.+. +..+.+.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 3344556788888888888875433322 112 266666 6666554
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.3e-09 Score=106.17 Aligned_cols=303 Identities=8% Similarity=0.010 Sum_probs=192.5
Q ss_pred hcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccC
Q 037792 30 IVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLW 109 (558)
Q Consensus 30 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 109 (558)
....+|+.+.+.. .++.+...+|.++.+|+.+++..+ ++ .++...|.++ +|+.+.+..+ +......+|... +|+
T Consensus 43 ~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~ 116 (379)
T 4h09_A 43 KDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLD 116 (379)
T ss_dssp GGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCS
T ss_pred ccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccceeccC-Ccc
Confidence 3356788888864 456566678888888888888654 55 6777777776 6777776543 443444456554 788
Q ss_pred eeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcc------------cchhhhcCC
Q 037792 110 ALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEG------------NIPVQFNNL 177 (558)
Q Consensus 110 ~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------~~~~~~~~l 177 (558)
.+.+..+ +......+|.. .+++.+.+..+ ++......|..+..++.+.+..+.... .....+...
T Consensus 117 ~i~lp~~-~~~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (379)
T 4h09_A 117 DFEFPGA-TTEIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAA 193 (379)
T ss_dssp EEECCTT-CCEECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTT
T ss_pred cccCCCc-ccccccccccc-ceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccc
Confidence 8888765 33334444544 35666666543 444556667778888887776543321 111223344
Q ss_pred cccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhh
Q 037792 178 ASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQ 257 (558)
Q Consensus 178 ~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~ 257 (558)
..+..+.+...........+....+++.+.+..+ +......++..+..|+.+.+. .+ ++.....+
T Consensus 194 ~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp-------------~~-v~~I~~~a 258 (379)
T 4h09_A 194 KTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIP-------------KN-VTSIGSFL 258 (379)
T ss_dssp CCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEEC-------------TT-CCEECTTT
T ss_pred ccccccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcC-------------CC-ccEeCccc
Confidence 4555555544332222222336778888888655 343555667666666555543 32 33344567
Q ss_pred ccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceee
Q 037792 258 LCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAV 337 (558)
Q Consensus 258 ~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (558)
|.++.+|+.+.+..+ +.......|.+
T Consensus 259 F~~~~~l~~i~l~~~-i~~i~~~aF~~----------------------------------------------------- 284 (379)
T 4h09_A 259 LQNCTALKTLNFYAK-VKTVPYLLCSG----------------------------------------------------- 284 (379)
T ss_dssp TTTCTTCCEEEECCC-CSEECTTTTTT-----------------------------------------------------
T ss_pred cceeehhcccccccc-ceecccccccc-----------------------------------------------------
Confidence 888888998888643 32111112221
Q ss_pred eeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCccccc
Q 037792 338 NFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 417 (558)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~ 417 (558)
+.+|+.+.+.++.++......|.++.+|+.+.|..+ ++.+...+|.++++|+++.+..+ ++.+
T Consensus 285 ---------------c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I 347 (379)
T 4h09_A 285 ---------------CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLI 347 (379)
T ss_dssp ---------------CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEE
T ss_pred ---------------ccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEE
Confidence 678888999888888677788999999999999755 66566778999999999999765 6656
Q ss_pred CchhcccCCC
Q 037792 418 IPPQLTELHS 427 (558)
Q Consensus 418 ~~~~l~~l~~ 427 (558)
...+|.+.+.
T Consensus 348 ~~~aF~~c~~ 357 (379)
T 4h09_A 348 ESGAFEGSSI 357 (379)
T ss_dssp CTTTTTTSSC
T ss_pred chhHhhCCCC
Confidence 6777876643
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.12 E-value=4.2e-09 Score=105.42 Aligned_cols=290 Identities=10% Similarity=0.059 Sum_probs=192.5
Q ss_pred hhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCC
Q 037792 52 SIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTE 131 (558)
Q Consensus 52 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~ 131 (558)
.+....+|+.+.+.. .++ .|++..|.++.+|+.+.+..+ ++.+...+|.++ +|+.+.+..+ +..+...+|.. .+
T Consensus 41 ~~~~~~~i~~v~ip~-~vt-~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~ 114 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GIT-SIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TD 114 (379)
T ss_dssp TGGGGGGCSEEEECT-TEE-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CC
T ss_pred ccccccCCEEEEeCC-Ccc-ChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CC
Confidence 456667899999864 356 788888999999999999754 665666788877 6888777654 55455556655 48
Q ss_pred CCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCC-------------Cc
Q 037792 132 LMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMIS-------------TL 198 (558)
Q Consensus 132 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-------------~~ 198 (558)
|+.+.+..+ +.......|.++ +++.+.+..+ +.......|..+.+++.+.+..+........ ..
T Consensus 115 L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (379)
T 4h09_A 115 LDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYP 191 (379)
T ss_dssp CSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECC
T ss_pred cccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccc
Confidence 999999765 333445566665 5666666543 3435566777888888877765432211111 11
Q ss_pred CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCcccc
Q 037792 199 NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSI 278 (558)
Q Consensus 199 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 278 (558)
....+..+.+..... .....++..+..|+.+ .+..+ +.......+..+..|+.+.+..+ ++...
T Consensus 192 ~~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i-------------~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~ 255 (379)
T 4h09_A 192 AAKTGTEFTIPSTVK-TVTAYGFSYGKNLKKI-------------TITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIG 255 (379)
T ss_dssp TTCCCSEEECCTTCC-EECTTTTTTCSSCSEE-------------ECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEEC
T ss_pred cccccccccccccee-EEeeccccccccccee-------------eeccc-eeEEccccccCCccceEEEcCCC-ccEeC
Confidence 334455555443322 2334445544444444 44333 33345567888999999998765 32111
Q ss_pred ChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCE
Q 037792 279 PACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAG 358 (558)
Q Consensus 279 p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 358 (558)
..+|.+ ..+|+.
T Consensus 256 ~~aF~~--------------------------------------------------------------------~~~l~~ 267 (379)
T 4h09_A 256 SFLLQN--------------------------------------------------------------------CTALKT 267 (379)
T ss_dssp TTTTTT--------------------------------------------------------------------CTTCCE
T ss_pred ccccce--------------------------------------------------------------------eehhcc
Confidence 222222 456777
Q ss_pred EEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCC
Q 037792 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYN 436 (558)
Q Consensus 359 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N 436 (558)
+.+..+ +.......|.++++|+.+.+.++.++.+...+|.++.+|++++|..+ ++.+...+|.++++|+.+.+..+
T Consensus 268 i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 268 LNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 777543 55455678899999999999999998777789999999999999765 66677889999999999988554
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.4e-09 Score=105.51 Aligned_cols=42 Identities=14% Similarity=0.075 Sum_probs=21.7
Q ss_pred hhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcc
Q 037792 172 VQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGG 215 (558)
Q Consensus 172 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~ 215 (558)
..+..+|+|+.|.+++|.-..... +..++|++|++..+.+..
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l~~--~~~~~L~~L~L~~~~l~~ 207 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSIGK--KPRPNLKSLEIISGGLPD 207 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBCCS--CBCTTCSEEEEECSBCCH
T ss_pred HHHhcCCCCcEEEEeCCCCceecc--ccCCCCcEEEEecCCCCh
Confidence 444555666666666552111111 235666666666665543
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.2e-08 Score=100.60 Aligned_cols=148 Identities=13% Similarity=0.086 Sum_probs=94.2
Q ss_pred chhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhc--CCcccceeeccc--ccccc------
Q 037792 123 KDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFN--NLASLQILNISE--NNLSG------ 192 (558)
Q Consensus 123 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~--n~i~~------ 192 (558)
...+..+|+|+.|++++|.-. ..+. +. +++|+.|++..+.+.......+. .+++|+.|+|+. +...+
T Consensus 165 ~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 165 SPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp HHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred HHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHH
Confidence 345566788888888776311 1222 33 67888888888877644444443 678888888753 21111
Q ss_pred ccCCC--cCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCc----hhhccCCCCCCE
Q 037792 193 SMIST--LNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPI----PHQLCHLRKLGI 266 (558)
Q Consensus 193 ~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~ 266 (558)
..... ..+++|++|++.+|.+.+..+..+...+ .+++|++|+++.|.+++.. +..+..+++|+.
T Consensus 242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~----------~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~ 311 (362)
T 2ra8_A 242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESD----------ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKF 311 (362)
T ss_dssp TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCS----------SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSE
T ss_pred HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCc----------cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceE
Confidence 11111 1478999999999988765555554322 2477888888888887543 333456789999
Q ss_pred EEcccCcCccccChhhh
Q 037792 267 MDISHNRLNGSIPACIT 283 (558)
Q Consensus 267 L~l~~n~l~~~~p~~~~ 283 (558)
|++++|.++...-..+.
T Consensus 312 L~L~~n~i~d~~~~~l~ 328 (362)
T 2ra8_A 312 INMKYNYLSDEMKKELQ 328 (362)
T ss_dssp EECCSBBCCHHHHHHHH
T ss_pred EECCCCcCCHHHHHHHH
Confidence 99999988754443333
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=2.4e-08 Score=88.76 Aligned_cols=86 Identities=16% Similarity=0.293 Sum_probs=41.1
Q ss_pred cccCEEEccCCCCCCC----CCccccCccCCCeeeccCCcCCcc----chhhhhccccCCeEeC--CCCccccc----Cc
Q 037792 354 ELMAGLDLSNNELTGD----IPSEIGDLQNIHGLNLSHNFLSGS----IPESFSNLKMIESLDL--SHNKLNGQ----IP 419 (558)
Q Consensus 354 ~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L--s~N~i~~~----~~ 419 (558)
++|++|+|++|.+.+. +...+...+.|++|+|++|.|++. +.+.+...++|++|+| ++|.|... +.
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~ 144 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIA 144 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHH
T ss_pred CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHH
Confidence 3444455555544422 122233344555555555555532 2333444455666666 55555432 22
Q ss_pred hhcccCCCCCEEecCCCCCc
Q 037792 420 PQLTELHSLSTFDVSYNNLS 439 (558)
Q Consensus 420 ~~l~~l~~L~~L~l~~N~l~ 439 (558)
..+...++|++|++++|.+.
T Consensus 145 ~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 145 NMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCcCEEeccCCCCC
Confidence 33444455666666666553
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.3e-07 Score=83.89 Aligned_cols=116 Identities=13% Similarity=0.094 Sum_probs=57.2
Q ss_pred hhhCCCCCCEEEcccc-cCCccchH---HHHhcCCCCCEEEccCCccCccC----chhhcCCCccCeeeccccccccc--
Q 037792 52 SIGKMQGLRLLDVSSN-NFAGELSQ---SLVINCFSLEWLDLSNNNFVGQI----FPNYMNLTRLWALYLYNNNFSGK-- 121 (558)
Q Consensus 52 ~~~~l~~L~~L~L~~n-~l~~~~~~---~~~~~l~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~l~~n~i~~~-- 121 (558)
.+...+.|++|+|++| .+...-.. ..+...++|++|++++|.+.+.. ...+...++|++|++++|.+...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 3444455555555555 44421111 11123445555555555554321 22334445566666666655432
Q ss_pred --cchhhcCCCCCCEEEc--cCCcCCCCC----cccccCCCCCcEEEcccCcCc
Q 037792 122 --IKDGLLRSTELMVLDI--SNNRLSGHI----PSWMGNFSTLQILSMSKNLLE 167 (558)
Q Consensus 122 --~~~~~~~l~~L~~L~L--~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~ 167 (558)
+...+...++|++|++ ++|.+.... ...+...+.|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2334455566666666 566665322 223344566777777777654
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.35 E-value=4.9e-07 Score=84.34 Aligned_cols=78 Identities=29% Similarity=0.345 Sum_probs=41.0
Q ss_pred hcccCEEEccCCCCCC--CCCccccCccCCCeeeccCCcCCccchhhhhccc--cCCeEeCCCCcccccCc-------hh
Q 037792 353 LELMAGLDLSNNELTG--DIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLK--MIESLDLSHNKLNGQIP-------PQ 421 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--~L~~L~Ls~N~i~~~~~-------~~ 421 (558)
+++|+.|+|++|.+++ .++..+..+++|+.|+|++|.|++. +.+..+. +|++|+|++|.+.+..| ..
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 4556666666666654 2334445566666666666666543 2223333 56666666666554333 23
Q ss_pred cccCCCCCEEe
Q 037792 422 LTELHSLSTFD 432 (558)
Q Consensus 422 l~~l~~L~~L~ 432 (558)
+..+|+|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 44555555554
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.30 E-value=2.4e-07 Score=80.13 Aligned_cols=85 Identities=13% Similarity=0.098 Sum_probs=71.1
Q ss_pred cccCEEEccCCCCCCCCCccccCccCCCeeeccCCc-CCccchhhhhcc----ccCCeEeCCCCc-ccccCchhcccCCC
Q 037792 354 ELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNF-LSGSIPESFSNL----KMIESLDLSHNK-LNGQIPPQLTELHS 427 (558)
Q Consensus 354 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l----~~L~~L~Ls~N~-i~~~~~~~l~~l~~ 427 (558)
..|+.||+++|.+++.....+..+++|++|+|++|. +++..-..+..+ ++|++|+|++|. |+...-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 468999999999987766778899999999999996 886655666664 479999999985 88665567788999
Q ss_pred CCEEecCCCCC
Q 037792 428 LSTFDVSYNNL 438 (558)
Q Consensus 428 L~~L~l~~N~l 438 (558)
|++|++++|+-
T Consensus 141 L~~L~L~~c~~ 151 (176)
T 3e4g_A 141 LKYLFLSDLPG 151 (176)
T ss_dssp CCEEEEESCTT
T ss_pred CCEEECCCCCC
Confidence 99999999863
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.25 E-value=3.2e-07 Score=85.64 Aligned_cols=80 Identities=24% Similarity=0.333 Sum_probs=45.2
Q ss_pred hCCCCCCEEEcccccCCc--cchHHHHhcCCCCCEEEccCCccCccCchhhcCCC--ccCeeeccccccccccc------
Q 037792 54 GKMQGLRLLDVSSNNFAG--ELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLT--RLWALYLYNNNFSGKIK------ 123 (558)
Q Consensus 54 ~~l~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~--~L~~L~l~~n~i~~~~~------ 123 (558)
.++++|++|+|++|++++ .++. .+..+++|+.|+|++|.+.+. ..+..+. +|++|++++|.+.+..+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~-~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSS-IVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTT-HHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchh-HHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 456666666666666663 2222 235566666666666666543 2223333 66777777776654332
Q ss_pred -hhhcCCCCCCEEE
Q 037792 124 -DGLLRSTELMVLD 136 (558)
Q Consensus 124 -~~~~~l~~L~~L~ 136 (558)
..+..+++|+.||
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 2355667777765
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.12 E-value=1.6e-06 Score=74.87 Aligned_cols=84 Identities=8% Similarity=0.027 Sum_probs=51.7
Q ss_pred CCccEEEccCCcCCCCCchhhhCCCCCCEEEccccc-CCccchHHHHhcC----CCCCEEEccCCc-cCccCchhhcCCC
Q 037792 33 PKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNN-FAGELSQSLVINC----FSLEWLDLSNNN-FVGQIFPNYMNLT 106 (558)
Q Consensus 33 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l----~~L~~L~l~~n~-i~~~~~~~~~~l~ 106 (558)
..|+.||++++.|+...-..+.++++|++|+|++|. +++.--..+ ..+ ++|++|++++|. +++.....+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L-~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERL-SQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHH-HTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHH-HhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 367777777777765555566777777777777774 553322333 232 357777777663 6555555556666
Q ss_pred ccCeeeccccc
Q 037792 107 RLWALYLYNNN 117 (558)
Q Consensus 107 ~L~~L~l~~n~ 117 (558)
+|++|+++++.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 66666666654
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00017 Score=59.36 Aligned_cols=60 Identities=23% Similarity=0.228 Sum_probs=39.1
Q ss_pred eeeccCCcCC-ccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCC
Q 037792 382 GLNLSHNFLS-GSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIP 443 (558)
Q Consensus 382 ~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p 443 (558)
.++-+++.++ ..+|..+. ++|+.|+|++|+|+.+.+..|..+++|+.|+|++|++.+.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 4555566554 23343322 357777888887776667777777788888777777776554
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00017 Score=59.29 Aligned_cols=60 Identities=15% Similarity=0.280 Sum_probs=46.9
Q ss_pred CeEeCCCCccc-ccCchhcccCCCCCEEecCCCCCcCCCCC-CcccCCCCcccccCCCCCCCCC
Q 037792 405 ESLDLSHNKLN-GQIPPQLTELHSLSTFDVSYNNLSGPIPD-KEQFSTFDESSYRGNLFLCGPA 466 (558)
Q Consensus 405 ~~L~Ls~N~i~-~~~~~~l~~l~~L~~L~l~~N~l~~~~p~-~~~~~~l~~~~~~~N~~~C~~~ 466 (558)
..++.+++.++ ..+|..+. ++|++|+|++|+|+...+. ...+..++.+.+.+|||.|+|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 47899999987 24554432 3699999999999965554 3556788899999999999995
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00011 Score=64.55 Aligned_cols=83 Identities=18% Similarity=0.268 Sum_probs=40.2
Q ss_pred ccCEEEccCCCCCCC----CCccccCccCCCeeeccCCcCCccc----hhhhhccccCCeEeCCCCc---ccc----cCc
Q 037792 355 LMAGLDLSNNELTGD----IPSEIGDLQNIHGLNLSHNFLSGSI----PESFSNLKMIESLDLSHNK---LNG----QIP 419 (558)
Q Consensus 355 ~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~~~~l~~L~~L~Ls~N~---i~~----~~~ 419 (558)
.|+.|+|++|.+.+. +.+.+..-+.|++|+|++|.|++.. .+.+..-+.|++|+|++|. +.. .+.
T Consensus 71 ~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia 150 (197)
T 1pgv_A 71 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMM 150 (197)
T ss_dssp CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHH
T ss_pred CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHH
Confidence 445555555555422 2223334455666666666665432 2333444556666665442 221 123
Q ss_pred hhcccCCCCCEEecCCCC
Q 037792 420 PQLTELHSLSTFDVSYNN 437 (558)
Q Consensus 420 ~~l~~l~~L~~L~l~~N~ 437 (558)
..+..-++|+.|+++.|.
T Consensus 151 ~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 151 MAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHCSSCCEEECCCCC
T ss_pred HHHHhCCCcCeEeccCCC
Confidence 344555666666665554
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00029 Score=61.93 Aligned_cols=113 Identities=13% Similarity=0.130 Sum_probs=59.5
Q ss_pred hhCCCCCCEEEcccc-cCCcc----chHHHHhcCCCCCEEEccCCccCccC----chhhcCCCccCeeecccccccccc-
Q 037792 53 IGKMQGLRLLDVSSN-NFAGE----LSQSLVINCFSLEWLDLSNNNFVGQI----FPNYMNLTRLWALYLYNNNFSGKI- 122 (558)
Q Consensus 53 ~~~l~~L~~L~L~~n-~l~~~----~~~~~~~~l~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~l~~n~i~~~~- 122 (558)
+.+-+.|++|+|++| .+... +.+.+ ..-..|++|+|++|.+.+.. ...+...+.|++|+|+.|.|....
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL-~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAA-CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHH-TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHH-hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 344456666666654 55421 11222 33455666666666665422 233445666777777777665322
Q ss_pred ---chhhcCCCCCCEEEccCCcC---CC----CCcccccCCCCCcEEEcccCcC
Q 037792 123 ---KDGLLRSTELMVLDISNNRL---SG----HIPSWMGNFSTLQILSMSKNLL 166 (558)
Q Consensus 123 ---~~~~~~l~~L~~L~L~~n~l---~~----~~~~~~~~l~~L~~L~L~~n~l 166 (558)
..++..-+.|++|+|++|.. .. .+...+..-+.|+.|+++.|.+
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 23344456677777765422 21 1223344456677777776643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 558 | ||||
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 3e-15 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 5e-15 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-10 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-07 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-14 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 3e-13 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 4e-11 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 5e-07 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-06 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-13 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 5e-12 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-11 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-10 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 5e-05 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 8e-11 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 6e-10 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 1e-08 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 4e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-10 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 8e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.003 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 8e-10 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 4e-07 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 2e-06 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 3e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 9e-08 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 1e-06 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 2e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 6e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 8e-04 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 5e-06 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 6e-04 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 8e-06 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 4e-04 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 0.004 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 1e-05 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 4e-05 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.004 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-04 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 5e-04 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 6e-04 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 0.003 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 7e-04 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 0.002 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 0.002 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 75.4 bits (184), Expect = 3e-15
Identities = 42/202 (20%), Positives = 71/202 (35%), Gaps = 17/202 (8%)
Query: 11 HSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFA 70
SL + N S P + L ++++ N + ++ + L LD+++N +
Sbjct: 200 ESLIATNNQISDITPLGIL---TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS 254
Query: 71 GELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRST 130
S L L L N LT L L L N L+
Sbjct: 255 NLAPLS---GLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISPISNLK-- 307
Query: 131 ELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNL 190
L L + N +S P + + + LQ L + N + NL ++ L+ N +
Sbjct: 308 NLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQI 363
Query: 191 SGSMISTLNLSSVEHLYLQNNA 212
S NL+ + L L + A
Sbjct: 364 SDL-TPLANLTRITQLGLNDQA 384
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 74.7 bits (182), Expect = 5e-15
Identities = 59/417 (14%), Positives = 116/417 (27%), Gaps = 66/417 (15%)
Query: 32 LPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSN 91
L + + + K + + + + + L S V +L ++ SN
Sbjct: 21 LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFSN 75
Query: 92 NNFVGQI-FPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWM 150
N N L + + + L L I++ ++ +
Sbjct: 76 NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 135
Query: 151 GNFSTLQILSMSKNLLEGNIPVQFNN-----------LASLQILNISENNLSGSMISTLN 199
+ +S L Q + + +N +
Sbjct: 136 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 195
Query: 200 LSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLC 259
L+++E L NN + P +NL L L GN L+ L
Sbjct: 196 LTNLESLIATNNQISDITPLGI---------------LTNLDELSLNGNQLKDI--GTLA 238
Query: 260 HLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTV 319
L L +D+++N+++ P L L + N
Sbjct: 239 SLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN--- 295
Query: 320 ELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQN 379
+ L+ + L L N ++ P + L
Sbjct: 296 -----------------------QLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTK 330
Query: 380 IHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYN 436
+ L ++N +S S +NL I L HN+++ P L L ++ ++
Sbjct: 331 LQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 60.8 bits (146), Expect = 2e-10
Identities = 65/381 (17%), Positives = 122/381 (32%), Gaps = 44/381 (11%)
Query: 89 LSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPS 148
++ + + QIF + L L N + + L + L +
Sbjct: 6 ITQDTPINQIFTDT-ALAEKMKTVLGKTNVTDTVSQTDLDQ--VTTLQADRLGIKS--ID 60
Query: 149 WMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYL 208
+ + L ++ S N L P NL L + ++ N ++ +
Sbjct: 61 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF 118
Query: 209 QNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMD 268
N + LE I++ S L L G L L L ++
Sbjct: 119 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLE 178
Query: 269 ISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDG 328
N + L + I + D + EL L+GN
Sbjct: 179 RLDISSNKVSDISVLAKLTN-------LESLIATNNQISDITPLGILTNLDELSLNGNQL 231
Query: 329 RMLGALVAVNFMTKNRYESYKGDILELMAG------LDLSNNELTGDIP----------- 371
+ +G L ++ +T + + L ++G L L N+++ P
Sbjct: 232 KDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLE 291
Query: 372 ---------SEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQL 422
S I +L+N+ L L N +S P S+L ++ L ++NK++ L
Sbjct: 292 LNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSL 347
Query: 423 TELHSLSTFDVSYNNLSGPIP 443
L +++ +N +S P
Sbjct: 348 ANLTNINWLSAGHNQISDLTP 368
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 50.8 bits (120), Expect = 2e-07
Identities = 49/308 (15%), Positives = 93/308 (30%), Gaps = 45/308 (14%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
L ++ S N + P L ++ N + L ++ +
Sbjct: 68 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP 127
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGK-------- 121
L+ + S D+S + + + L N +
Sbjct: 128 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV 187
Query: 122 -IKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASL 180
L + T L L +NN++S P + + L LS++ N L+ +L +L
Sbjct: 188 SDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNL 243
Query: 181 QILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIP--------------------NT 220
L+++ N +S + L+ + L L N + P +
Sbjct: 244 TDLDLANNQISN-LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP 302
Query: 221 FFRGSALETLDLRINEHS---------NLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISH 271
L L L N S L+ L N + L +L + + H
Sbjct: 303 ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGH 360
Query: 272 NRLNGSIP 279
N+++ P
Sbjct: 361 NQISDLTP 368
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 72.8 bits (177), Expect = 1e-14
Identities = 39/289 (13%), Positives = 94/289 (32%), Gaps = 21/289 (7%)
Query: 129 STELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISEN 188
+ +LD+ NN+++ N L L + N + P F L L+ L +S+N
Sbjct: 30 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89
Query: 189 NLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGN 248
L + +++ L + N + + F + + ++L N +
Sbjct: 90 QLKE--LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS-------- 139
Query: 249 YLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDD 308
G ++KL + I+ + ++ ++ + D L++
Sbjct: 140 ---GIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNN 196
Query: 309 AYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTG 368
+++ + +G+ K + + + L NN ++
Sbjct: 197 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA 256
Query: 369 ------DIPSEIGDLQNIHGLNLSHNFLSGS--IPESFSNLKMIESLDL 409
P + G++L N + P +F + + ++ L
Sbjct: 257 IGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 68.5 bits (166), Expect = 3e-13
Identities = 47/288 (16%), Positives = 94/288 (32%), Gaps = 22/288 (7%)
Query: 49 IPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRL 108
+P + LLD+ +N + N +L L L NN + L +L
Sbjct: 25 VPKDLPP--DTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81
Query: 109 WALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEG 168
LYL N + EL V + ++ + + + +++ + G
Sbjct: 82 ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS-G 140
Query: 169 NIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALE 228
F + L + I++ N+ + I S+ L+L N + + + L
Sbjct: 141 IENGAFQGMKKLSYIRIADTNI--TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLA 198
Query: 229 TLDLR-----------INEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRL--- 274
L L + +LR L L N L +P L + + ++ + +N +
Sbjct: 199 KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI 257
Query: 275 -NGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVEL 321
+ N + L+ + + Y + V+L
Sbjct: 258 GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 62.0 bits (149), Expect = 4e-11
Identities = 47/240 (19%), Positives = 82/240 (34%), Gaps = 14/240 (5%)
Query: 201 SSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCH 260
L LQNN + F NL TL+L N + P
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKN-------------LKNLHTLILINNKISKISPGAFAP 77
Query: 261 LRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVE 320
L KL + +S N+L + RV + + L+ V + ++
Sbjct: 78 LVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 137
Query: 321 LLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNI 380
N ++ + + + + L L N++T + + L N+
Sbjct: 138 SSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNL 197
Query: 381 HGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSG 440
L LS N +S S +N + L L++NKL ++P L + + + NN+S
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 256
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 49.3 bits (116), Expect = 5e-07
Identities = 33/181 (18%), Positives = 60/181 (33%), Gaps = 8/181 (4%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
LDL NN++T + +L+N+H L L +N +S P +F+ L +E L LS N
Sbjct: 36 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN------ 89
Query: 419 PPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGPAINKGCTNLPELL 478
QL EL + + K + S F+ + + L +
Sbjct: 90 --QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147
Query: 479 EPSSKGAEDESEVDLVAFYWSFVASCVTVMLGLLAILWVNPYWRRLWFYFIEDCIDLCYY 538
++ ++ S + L I V+ + + +
Sbjct: 148 GMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207
Query: 539 W 539
Sbjct: 208 S 208
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.3 bits (111), Expect = 2e-06
Identities = 30/241 (12%), Positives = 76/241 (31%), Gaps = 25/241 (10%)
Query: 238 SNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYG 297
+ L L+ N + +L+ L + + +N+++ P ++
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER------- 83
Query: 298 FDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMA 357
+ ++ L + + V N +TK R + G ++
Sbjct: 84 --------------LYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 129
Query: 358 GLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 417
L + + +G ++ + + ++ ++ +L L L NK+
Sbjct: 130 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSL---TELHLDGNKITKV 186
Query: 418 IPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTF-DESSYRGNLFLCGPAINKGCTNLPE 476
L L++L+ +S+N++S + E N + P +
Sbjct: 187 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQV 246
Query: 477 L 477
+
Sbjct: 247 V 247
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 69.4 bits (168), Expect = 2e-13
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 402 KMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLF 461
K + LDL +N++ G +P LT+L L + +VS+NNL G IP FD S+Y N
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKC 303
Query: 462 LCGPAINKGCT 472
LCG + CT
Sbjct: 304 LCGSPLPA-CT 313
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 64.8 bits (156), Expect = 5e-12
Identities = 59/252 (23%), Positives = 95/252 (37%), Gaps = 13/252 (5%)
Query: 43 NSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVI-NCFSLEWLDLSNN-NFVGQIFP 100
++ G + + + + LD+S N + N L +L + N VG I P
Sbjct: 36 RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP 95
Query: 101 NYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILS 160
LT+L LY+ + N SG I D L + L+ LD S N LSG +P + + L ++
Sbjct: 96 AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT 155
Query: 161 MSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNT 220
N + G IP + + + L N I + + + +
Sbjct: 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASV 215
Query: 221 FFRGSALETLD-----------LRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDI 269
F ++ NL L LR N + G +P L L+ L +++
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275
Query: 270 SHNRLNGSIPAC 281
S N L G IP
Sbjct: 276 SFNNLCGEIPQG 287
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 64.0 bits (154), Expect = 1e-11
Identities = 57/263 (21%), Positives = 94/263 (35%), Gaps = 19/263 (7%)
Query: 175 NNLASLQILNISENNLSGSMI---STLNLSSVEHLYLQNNA-LGGSIPNTFFRGSALETL 230
+ L++S NL S NL + LY+ L G IP + + L L
Sbjct: 47 TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106
Query: 231 DLRINE-----------HSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIP 279
+ L TL N L G +P + L L + NR++G+IP
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166
Query: 280 A---CITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVA 336
+ + S + I + + + +E G
Sbjct: 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226
Query: 337 VNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPE 396
++ K + + + GLDL NN + G +P + L+ +H LN+S N L G IP+
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Query: 397 SFSNLKMIESLDLSHNKLNGQIP 419
NL+ + ++NK P
Sbjct: 287 -GGNLQRFDVSAYANNKCLCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 60.5 bits (145), Expect = 1e-10
Identities = 41/184 (22%), Positives = 62/184 (33%), Gaps = 2/184 (1%)
Query: 35 LVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNF 94
LV ++ S N+ G +P SI + L + N +G + S + +S N
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 95 VGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFS 154
G+I P + NL + N S + +G
Sbjct: 187 TGKIPPTFANLNLAFVDLSRNMLEGDASVLF--GSDKNTQKIHLAKNSLAFDLGKVGLSK 244
Query: 155 TLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALG 214
L L + N + G +P L L LN+S NNL G + NL + NN
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL 304
Query: 215 GSIP 218
P
Sbjct: 305 CGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 43.2 bits (100), Expect = 5e-05
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 11 HSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
+ LD+ N G LPQ + L L +N+S N+ G IP G +Q + ++N
Sbjct: 247 NGLDLRNNRIYGTLPQGLT-QLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKC 303
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.0 bits (146), Expect = 8e-11
Identities = 43/255 (16%), Positives = 74/255 (29%), Gaps = 14/255 (5%)
Query: 33 PKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNN 92
+ + N +S + L +L + SN A + + + N
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 93 NFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGN 152
+ L RL L+L L L + +N L +
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151
Query: 153 FSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNN 211
L L + N + F L SL L + +N ++ +L + LYL N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211
Query: 212 ALGGSIPNTFFRGSALETLDLRINE----------HSNLRTLLLRGNYLQGPIPHQLCHL 261
L AL+ L L N + L+ + + +P L
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQ---RL 268
Query: 262 RKLGIMDISHNRLNG 276
+ ++ N L G
Sbjct: 269 AGRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.3 bits (139), Expect = 6e-10
Identities = 41/251 (16%), Positives = 74/251 (29%), Gaps = 28/251 (11%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
+ + N S +P L + + N ++ + L LD+S N
Sbjct: 34 SQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRS 129
+ + L L L + L L LYL +N D
Sbjct: 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152
Query: 130 TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLA----------- 178
L L + NR+S +L L + +N + P F +L
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212
Query: 179 -------------SLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGS 225
+LQ L +++N + + ++ ++ + S+P G
Sbjct: 213 LSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQR-LAGR 271
Query: 226 ALETLDLRINE 236
L L N+
Sbjct: 272 DL--KRLAAND 280
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.0 bits (128), Expect = 1e-08
Identities = 48/296 (16%), Positives = 81/296 (27%), Gaps = 40/296 (13%)
Query: 134 VLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGS 193
L +P + + Q + + N + F +L IL + N L+
Sbjct: 15 TTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71
Query: 194 --MISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDL-----------RINEHSNL 240
T + N L P TF L TL L + L
Sbjct: 72 DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131
Query: 241 RTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDI 300
+ L L+ N LQ L L + + NR++ + ++ L+
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL--HSLDRLLLH---- 185
Query: 301 VLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLD 360
N M L A N L+ L
Sbjct: 186 -----------QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ---YLR 231
Query: 361 LSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG 416
L++N D + + S + + S+P+ + + L+ N L G
Sbjct: 232 LNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDL---KRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (108), Expect = 4e-06
Identities = 41/241 (17%), Positives = 69/241 (28%), Gaps = 20/241 (8%)
Query: 238 SNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYG 297
+ + + L GN + R L I+ + N L A T +
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL------------ 79
Query: 298 FDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMA 357
L+ +S+ + L L + + L
Sbjct: 80 ------ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133
Query: 358 GLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 417
L +N L DL N+ L L N +S +F L ++ L L N++
Sbjct: 134 L-YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192
Query: 418 IPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDES-SYRGNLFLCGPAINKGCTNLPE 476
P +L L T + NNLS + + N ++C L +
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQK 252
Query: 477 L 477
Sbjct: 253 F 253
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.4 bits (144), Expect = 2e-10
Identities = 51/446 (11%), Positives = 111/446 (24%), Gaps = 30/446 (6%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEG----NIPSSIGKMQGLRLLDVS 65
+ SLDI S + +L + + + +I S++ L L++
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 66 SNNFAGE----LSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTR-LWALYLYNNNFSG 120
SN + Q L ++ L L N G + R L L + + +
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123
Query: 121 KIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASL 180
GL E ++ + S + S+ + + NN +
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183
Query: 181 QILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNL 240
+ + L S L +N L +
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243
Query: 241 RTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLF---SRVENGYLYG 297
L + + + + + + G
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303
Query: 298 FDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMA 357
+ +L + S + + N G
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 363
Query: 358 G---------LDLSNNELTGD----IPSEIGDLQNIHGLNLSHNFLSGSIPESFS----- 399
L L++ +++ + + + ++ L+LS+N L +
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423
Query: 400 NLKMIESLDLSHNKLNGQIPPQLTEL 425
++E L L + ++ +L L
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQAL 449
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.1 bits (107), Expect = 8e-06
Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 5/87 (5%)
Query: 359 LDLSNNELTGDIPSEIGD-LQNIHGLNLSHNFLSG----SIPESFSNLKMIESLDLSHNK 413
LD+ EL+ +E+ LQ + L L+ I + + L+L N+
Sbjct: 7 LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66
Query: 414 LNGQIPPQLTELHSLSTFDVSYNNLSG 440
L + + + + +L
Sbjct: 67 LGDVGVHCVLQGLQTPSCKIQKLSLQN 93
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (94), Expect = 3e-04
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 379 NIHGLNLSHNFLSGS-IPESFSNLKMIESLDLSHNKLNGQ----IPPQLTELHSLSTFDV 433
+I L++ LS + E L+ + + L L I L +L+ ++
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 434 SYNNLSG 440
N L
Sbjct: 63 RSNELGD 69
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.0 bits (86), Expect = 0.003
Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 13/96 (13%)
Query: 173 QFNNLASLQILNISENNLSGSMISTL-----NLSSVEHLYLQNNALGGSIPNTFFRGSAL 227
+ L++L +++ ++S S S+L S+ L L NN LG +
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVES--- 420
Query: 228 ETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRK 263
+R L L+L Y + +L L K
Sbjct: 421 ----VRQP-GCLLEQLVLYDIYWSEEMEDRLQALEK 451
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.4 bits (137), Expect = 8e-10
Identities = 34/209 (16%), Positives = 69/209 (33%), Gaps = 8/209 (3%)
Query: 5 SAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDV 64
S ++ + + + LP ++ +++S+N +++ L L++
Sbjct: 7 SKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 65 SSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKD 124
++ V + ++N + + L L L + N +
Sbjct: 63 DRAEL----TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118
Query: 125 GLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILN 184
L EL L + N L P + L+ LS++ N L N L +L L
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178
Query: 185 ISENNLSGSMISTLNLSSVEHLYLQNNAL 213
+ EN+L + +L N
Sbjct: 179 LQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.3 bits (116), Expect = 4e-07
Identities = 31/201 (15%), Positives = 55/201 (27%), Gaps = 24/201 (11%)
Query: 238 SNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYG 297
+ L L N L L +L +++ L +L + +
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90
Query: 298 FDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMA 357
+L L V + L +L +
Sbjct: 91 SLPLLGQTLPALTVLDVSF------------NRLTSLPLGALRGLGELQELYLK------ 132
Query: 358 GLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 417
NEL P + + L+L++N L+ + L+ +++L L N L
Sbjct: 133 -----GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-T 186
Query: 418 IPPQLTELHSLSTFDVSYNNL 438
IP H L + N
Sbjct: 187 IPKGFFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.0 bits (110), Expect = 2e-06
Identities = 39/243 (16%), Positives = 64/243 (26%), Gaps = 39/243 (16%)
Query: 173 QFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDL 232
+ + +AS +N + NL+ + L+L N L T + L L+L
Sbjct: 5 EVSKVASHLEVNCDKRNLTA--LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 233 RINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVEN 292
R + + L L L + L + N
Sbjct: 63 D------------RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN 110
Query: 293 GYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDI 352
LR + + N L +
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL----------------- 153
Query: 353 LELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHN 412
L+NN LT + L+N+ L L N L +IP+ F ++ L N
Sbjct: 154 -------SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
Query: 413 KLN 415
Sbjct: 206 PWL 208
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.5 bits (93), Expect = 3e-04
Identities = 39/224 (17%), Positives = 58/224 (25%), Gaps = 20/224 (8%)
Query: 52 SIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWAL 111
+ K+ ++ N L L + L LS N M TRL L
Sbjct: 5 EVSKVASHLEVNCDKRNLT-ALPPDLPKD---TTILHLSENLLYTFSLATLMPYTRLTQL 60
Query: 112 YLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIP 171
L + DG L L LD+S+N+L + + L +
Sbjct: 61 NLDRAELTKLQVDGTL--PVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118
Query: 172 VQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLD 231
++ + +E L L NN L L+TL
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178
Query: 232 LRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLN 275
L+ N IP L + N
Sbjct: 179 LQENSLYT--------------IPKGFFGSHLLPFAFLHGNPWL 208
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 51.7 bits (122), Expect = 9e-08
Identities = 61/319 (19%), Positives = 101/319 (31%), Gaps = 23/319 (7%)
Query: 132 LMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLS 191
L+++N LS +P + L+ L S N L +P SL+ L + NNL
Sbjct: 40 AHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELP---ELPQSLKSLLVDNNNLK 91
Query: 192 GSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQ 251
L + Q L ++F + ++ L+ + Q
Sbjct: 92 ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151
Query: 252 GPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYV 311
+L +L L + +N L ++ N ++ +L Y
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211
Query: 312 SNYYNSTV------ELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNE 365
N T+ L+ D + +T L + N
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271
Query: 366 LTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTEL 425
+ +I S ++ LN+S+N L +P L E L S N L ++P L
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPELPQNL 326
Query: 426 HSLSTFDVSYNNLSGPIPD 444
L V YN L PD
Sbjct: 327 KQL---HVEYNPLRE-FPD 341
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 48.3 bits (113), Expect = 1e-06
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
L++SNN+L ++P+ L+ L S N L+ +PE NLK L + +N L +
Sbjct: 289 LNVSNNKLI-ELPALPPRLER---LIASFNHLA-EVPELPQNLK---QLHVEYNPLR-EF 339
Query: 419 PPQLTELHSL 428
P + L
Sbjct: 340 PDIPESVEDL 349
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 41.3 bits (95), Expect = 2e-04
Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 11/125 (8%)
Query: 86 WLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGH 145
+ F+ + L+ L Y N S +I+ L L++SNN+L
Sbjct: 240 PELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-E 298
Query: 146 IPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEH 205
+P+ L+ L S N L +P +L+ L++ N L + SVE
Sbjct: 299 LPALPPR---LERLIASFNHLA-EVP---ELPQNLKQLHVEYNPLRE--FPDI-PESVED 348
Query: 206 LYLQN 210
L + +
Sbjct: 349 LRMNS 353
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 39.8 bits (91), Expect = 6e-04
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 9/79 (11%)
Query: 80 NCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISN 139
SLE L++SNN + P RL L N+ + ++ + L L +
Sbjct: 282 LPPSLEELNVSNNKLIE--LPA--LPPRLERLIASFNHLA-EVPELP---QNLKQLHVEY 333
Query: 140 NRLSGHIPSWMGNFSTLQI 158
N L P + L++
Sbjct: 334 NPLRE-FPDIPESVEDLRM 351
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 39.4 bits (90), Expect = 8e-04
Identities = 20/105 (19%), Positives = 33/105 (31%), Gaps = 9/105 (8%)
Query: 80 NCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISN 139
L N +I L L + NN ++ L L S
Sbjct: 258 GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP---PRLERLIASF 313
Query: 140 NRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILN 184
N L+ +P N L+ L + N L P ++ L++ +
Sbjct: 314 NHLA-EVPELPQN---LKQLHVEYNPLRE-FPDIPESVEDLRMNS 353
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 45.8 bits (107), Expect = 5e-06
Identities = 27/236 (11%), Positives = 76/236 (32%), Gaps = 26/236 (11%)
Query: 176 NLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRIN 235
LA+ + ++N++ + ++ +L + L + +I +
Sbjct: 17 ALANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVT-TIEG--------------VQ 60
Query: 236 EHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYL 295
+NL L L+ N + P + + + + +I +
Sbjct: 61 YLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQIT 120
Query: 296 YGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILEL 355
+ L Y+ + + L + + + + ++ +L
Sbjct: 121 DVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQY-----LSIGNAQVSDLTPLANLSKL 175
Query: 356 MAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSH 411
+N+++ P + L N+ ++L +N +S P +N + + L++
Sbjct: 176 TTLKA-DDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 39.2 bits (90), Expect = 6e-04
Identities = 25/214 (11%), Positives = 61/214 (28%), Gaps = 21/214 (9%)
Query: 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNF 69
+ +++ + + Q L + ++ + + L L++ N
Sbjct: 21 AIKIAAGKSNVTDTVTQAD---LDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQI 75
Query: 70 AGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYN-------------N 116
+ LE N + L + + +
Sbjct: 76 TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLY 135
Query: 117 NFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNN 176
+I + + + +S + + N S L L N + P +
Sbjct: 136 LDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LAS 193
Query: 177 LASLQILNISENNLSGSMISTLNLSSVEHLYLQN 210
L +L +++ N +S + N S++ + L N
Sbjct: 194 LPNLIEVHLKNNQISD-VSPLANTSNLFIVTLTN 226
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (102), Expect = 8e-06
Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 2/111 (1%)
Query: 358 GLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIP-ESFSNLKMIESLDLSHNKLNG 416
GL + + D + +N+ L + + + L + +L + + L
Sbjct: 12 GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70
Query: 417 QIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGPAI 467
P LS ++S+N L Q + E GN C A+
Sbjct: 71 VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCAL 121
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (89), Expect = 4e-04
Identities = 15/137 (10%), Positives = 37/137 (27%), Gaps = 3/137 (2%)
Query: 48 NIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTR 107
+ + + L L + + L + L L + + + R
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81
Query: 108 LWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLE 167
L L L N + + ++ N W+ + + + + L+
Sbjct: 82 LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQ 141
Query: 168 GNIPVQFNNLASLQILN 184
+ LA + +
Sbjct: 142 CHGQ---GPLAHMPNAS 155
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.3 bits (82), Expect = 0.004
Identities = 19/135 (14%), Positives = 38/135 (28%), Gaps = 3/135 (2%)
Query: 57 QGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYM-NLTRLWALYLYN 115
G L + + L + +L L + N + + + L L L +
Sbjct: 8 HGSSGLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65
Query: 116 NNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFN 175
+ D + L L++S N L + S +++ L
Sbjct: 66 SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQ 125
Query: 176 NLASLQILNISENNL 190
+ + E L
Sbjct: 126 RWEEEGLGGVPEQKL 140
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 42.8 bits (100), Expect = 1e-05
Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 24/104 (23%)
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIP---------------------ES 397
L L++ +LT + + L + L+LSHN L P +
Sbjct: 3 LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60
Query: 398 FSNLKMIESLDLSHNKLNG-QIPPQLTELHSLSTFDVSYNNLSG 440
+NL ++ L L +N+L L L ++ N+L
Sbjct: 61 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.2 bits (96), Expect = 4e-05
Identities = 14/106 (13%), Positives = 37/106 (34%), Gaps = 4/106 (3%)
Query: 87 LDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHI 146
L L++ + + + L + L L +N L + + + +++ ++
Sbjct: 3 LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA--LAALRCLEVLQASDNALENV 58
Query: 147 PSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSG 192
++L + L + + L +LN+ N+L
Sbjct: 59 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 35.1 bits (80), Expect = 0.004
Identities = 21/109 (19%), Positives = 39/109 (35%), Gaps = 7/109 (6%)
Query: 37 YMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVG 96
++++ + + ++ + LD+S N + LE L ++
Sbjct: 2 VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRAL--PPALAALRCLEVLQ--ASDNAL 55
Query: 97 QIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRS-TELMVLDISNNRLSG 144
+ NL RL L L NN L S L++L++ N L
Sbjct: 56 ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (104), Expect = 1e-05
Identities = 37/285 (12%), Positives = 83/285 (29%), Gaps = 28/285 (9%)
Query: 157 QILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGS 216
Q L ++ L ++ + + + + + + + V+H+ L N+ + S
Sbjct: 3 QTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61
Query: 217 IPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNG 276
+ S L+ L L G L PI + L L +++S
Sbjct: 62 TLHGILSQC------------SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS 109
Query: 277 SIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVA 336
SR++ L ++ A T L
Sbjct: 110 EFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG-----------Y 158
Query: 337 VNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSH-NFLSGSIP 395
+ K+ + L+ + L D E L + L+LS +
Sbjct: 159 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL 218
Query: 396 ESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSG 440
+ +++L + +G + +L ++ ++ +
Sbjct: 219 LELGEIPTLKTLQVFGIVPDGTLQ---LLKEALPHLQINCSHFTT 260
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.0 bits (97), Expect = 1e-04
Identities = 29/234 (12%), Positives = 73/234 (31%), Gaps = 14/234 (5%)
Query: 11 HSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFA 70
+LD++ + + ++ ++ ++ + + + ++ +D+S++
Sbjct: 3 QTLDLTGKNLHPDVTGR--LLSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIE 59
Query: 71 GELSQSLVINCFSLEWLDLSNNNFVGQI---FPNYMNLTRLWALYLYNNNFSGKIKDG-- 125
++ C L+ L L I NL RL +
Sbjct: 60 VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119
Query: 126 ---LLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQI 182
L D + + + + L + KNL + ++ +L
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 179
Query: 183 LNISENNLSG--SMISTLNLSSVEHLYLQN-NALGGSIPNTFFRGSALETLDLR 233
L++S++ + L+ ++HL L + L+TL +
Sbjct: 180 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 233
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.5 bits (90), Expect = 5e-04
Identities = 31/210 (14%), Positives = 55/210 (26%), Gaps = 10/210 (4%)
Query: 238 SNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENG---- 293
N L L+ L ++IS N + I A + + L E
Sbjct: 29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88
Query: 294 ----YLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYK 349
Y+ L +SN + + + + + + N +
Sbjct: 89 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 148
Query: 350 GDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDL 409
+ L L+ N + Q +N L + F LD+
Sbjct: 149 VGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 208
Query: 410 SHNKLNGQIPPQLTELHSLSTFDVSYNNLS 439
S +++ L L L NL
Sbjct: 209 SRTRIHSLPSYGLENLKKLRARST--YNLK 236
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.5 bits (90), Expect = 6e-04
Identities = 28/242 (11%), Positives = 62/242 (25%), Gaps = 10/242 (4%)
Query: 179 SLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHS 238
S ++ E+ ++ + S L + L L F LE +++ N+
Sbjct: 9 SNRVFLCQESKVT-EIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL 66
Query: 239 NLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGF 298
+ + + + K + + ++P ++ +
Sbjct: 67 EV----IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH 122
Query: 299 DIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAG 358
I + N T+E L + +
Sbjct: 123 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELN 182
Query: 359 LDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 418
L NN L L++S + NLK + + + K ++
Sbjct: 183 LS-DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KL 238
Query: 419 PP 420
P
Sbjct: 239 PT 240
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.2 bits (84), Expect = 0.003
Identities = 16/85 (18%), Positives = 25/85 (29%)
Query: 80 NCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISN 139
F L L+ N + NNN D ++ ++LDIS
Sbjct: 151 LSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 210
Query: 140 NRLSGHIPSWMGNFSTLQILSMSKN 164
R+ + N L+ S
Sbjct: 211 TRIHSLPSYGLENLKKLRARSTYNL 235
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.4 bits (88), Expect = 7e-04
Identities = 22/130 (16%), Positives = 46/130 (35%), Gaps = 8/130 (6%)
Query: 59 LRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNF 118
R LD+ + ++L + +D S+N + + L RL L + NN
Sbjct: 20 DRELDLRGYKI--PVIENLGATLDQFDAIDFSDNEI--RKLDGFPLLRRLKTLLVNNNRI 75
Query: 119 SGKIKDGLLRSTELMVLDISNNRLSG----HIPSWMGNFSTLQILSMSKNLLEGNIPVQF 174
+ +L L ++NN L + + + + L IL +
Sbjct: 76 CRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVI 135
Query: 175 NNLASLQILN 184
+ +++L+
Sbjct: 136 YKVPQVRVLD 145
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.2 bits (85), Expect = 0.002
Identities = 19/113 (16%), Positives = 35/113 (30%), Gaps = 6/113 (5%)
Query: 366 LTGDIPSEIGDLQN---IHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQL 422
LT ++ + N L+L + I + L +++D S N++ +
Sbjct: 3 LTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDGF 59
Query: 423 TELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGPAINKGCTNLP 475
L L T V+ N + +Q N L +L
Sbjct: 60 PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLK 112
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 38.7 bits (88), Expect = 0.002
Identities = 35/328 (10%), Positives = 75/328 (22%), Gaps = 46/328 (14%)
Query: 179 SLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGG----SIPNTFFRGSALETLDLRI 234
SL++ I+ + L SV+ + L N +G + LE +
Sbjct: 9 SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68
Query: 235 NEHSNLRTLLLRGNYLQGPIPHQLCHLRKL--------GIMDISHNRLNGSIPACITNML 286
++ + L + L + L
Sbjct: 69 IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128
Query: 287 FSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYE 346
+ L + ++ N +R
Sbjct: 129 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 188
Query: 347 SYKGDILELMAGLDLSNNELTG-----------------------DIPSEIGDLQNIHGL 383
+ + + + L G + + N+ L
Sbjct: 189 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 248
Query: 384 NLSHNFLSGSIPE------SFSNLKMIESLDLSHNKLNGQIPPQLTE-----LHSLSTFD 432
L+ LS S +++L L +N++ L + L +
Sbjct: 249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 308
Query: 433 VSYNNLSGPIPDKEQFSTFDESSYRGNL 460
++ N S ++ + RG L
Sbjct: 309 LNGNRFSEEDDVVDEIREVFSTRGRGEL 336
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 558 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.96 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.96 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.95 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.95 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.94 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.93 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.92 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.91 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.89 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.89 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.83 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.83 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.79 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.77 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.77 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.74 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.73 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.72 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.71 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.7 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.7 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.69 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.69 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.67 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.62 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.59 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.55 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.51 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.51 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.5 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.49 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.46 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.46 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.34 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.34 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.3 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.39 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.24 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.85 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.78 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.38 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.24 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.96 E-value=2.3e-29 Score=244.65 Aligned_cols=258 Identities=34% Similarity=0.533 Sum_probs=212.3
Q ss_pred CCCCEEEccCCcCCC--CCcccccCCCCCcEEEccc-CcCcccchhhhcCCcccceeeccccccccccCCCc-CCCCccE
Q 037792 130 TELMVLDISNNRLSG--HIPSWMGNFSTLQILSMSK-NLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEH 205 (558)
Q Consensus 130 ~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~ 205 (558)
.+++.|+|+++.+.+ .+|..++++++|++|+|++ |.+.+.+|..++++++|++|++++|++.+..+..+ .+..|+.
T Consensus 50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~ 129 (313)
T d1ogqa_ 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence 357778888877776 3667788888888888875 67777778888888888888888888887666655 7788888
Q ss_pred EEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCC-CEEEcccCcCccccChhhhc
Q 037792 206 LYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKL-GIMDISHNRLNGSIPACITN 284 (558)
Q Consensus 206 L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~p~~~~~ 284 (558)
+++++|.+.+.+|..+..+ +.++.+++++|.+.+.+|..+..+..+ +.+++++|++++..|..+.+
T Consensus 130 l~l~~N~~~~~~p~~l~~l-------------~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~ 196 (313)
T d1ogqa_ 130 LDFSYNALSGTLPPSISSL-------------PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196 (313)
T ss_dssp EECCSSEEESCCCGGGGGC-------------TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG
T ss_pred cccccccccccCchhhccC-------------cccceeeccccccccccccccccccccccccccccccccccccccccc
Confidence 8888888877777777654 455666667777877788888887776 88999999998777766544
Q ss_pred ccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCC
Q 037792 285 MLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNN 364 (558)
Q Consensus 285 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n 364 (558)
.....++++++
T Consensus 197 ---------------------------------------------------------------------l~~~~l~l~~~ 207 (313)
T d1ogqa_ 197 ---------------------------------------------------------------------LNLAFVDLSRN 207 (313)
T ss_dssp ---------------------------------------------------------------------CCCSEEECCSS
T ss_pred ---------------------------------------------------------------------ccccccccccc
Confidence 22346888999
Q ss_pred CCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCC
Q 037792 365 ELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD 444 (558)
Q Consensus 365 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~ 444 (558)
...+.+|..+..+++++.+++++|.+.+.+| .++.+++|+.|+|++|++++.+|..+.++++|++|++++|+++|.+|.
T Consensus 208 ~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~ 286 (313)
T d1ogqa_ 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred ccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC
Confidence 8888899999999999999999999987655 588899999999999999999999999999999999999999999998
Q ss_pred CcccCCCCcccccCCCCCCCCCCCCCC
Q 037792 445 KEQFSTFDESSYRGNLFLCGPAINKGC 471 (558)
Q Consensus 445 ~~~~~~l~~~~~~~N~~~C~~~~~~~c 471 (558)
...++.++.+++.+|+..|+.|+. .|
T Consensus 287 ~~~L~~L~~l~l~~N~~l~g~plp-~c 312 (313)
T d1ogqa_ 287 GGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp STTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred cccCCCCCHHHhCCCccccCCCCC-CC
Confidence 888899999999999999998763 55
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.96 E-value=1.3e-26 Score=231.87 Aligned_cols=78 Identities=23% Similarity=0.367 Sum_probs=43.0
Q ss_pred hcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEe
Q 037792 353 LELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFD 432 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~ 432 (558)
+++++.|++++|++++.. .+..+++|++|++++|++++ ++ .++++++|++|++++|++++..| +.++++|+.|+
T Consensus 306 ~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~ 379 (384)
T d2omza2 306 LKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLG 379 (384)
T ss_dssp CTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEE
T ss_pred hcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEee
Confidence 445555666666655332 25555666666666666553 22 35556666666666666654332 55556666666
Q ss_pred cCCC
Q 037792 433 VSYN 436 (558)
Q Consensus 433 l~~N 436 (558)
|++|
T Consensus 380 L~~N 383 (384)
T d2omza2 380 LNDQ 383 (384)
T ss_dssp CCCE
T ss_pred CCCC
Confidence 6554
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.95 E-value=1.6e-25 Score=223.85 Aligned_cols=323 Identities=23% Similarity=0.311 Sum_probs=212.5
Q ss_pred CCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCee
Q 037792 32 LPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWAL 111 (558)
Q Consensus 32 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 111 (558)
+.+|++|+++++.|+.. +.+..+++|++|++++|+++ .+++ +.++++|++|++++|++.+. ..+.++++|+.|
T Consensus 43 l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~-~l~~--l~~L~~L~~L~L~~n~i~~i--~~l~~l~~L~~L 115 (384)
T d2omza2 43 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADI--TPLANLTNLTGL 115 (384)
T ss_dssp HTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEE
T ss_pred hCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCC-CCcc--ccCCcccccccccccccccc--cccccccccccc
Confidence 45666666666666532 34566666666666666666 4443 45666666666666666542 235666666666
Q ss_pred eccccccccccchhhcCCCCCCEEEccCCcCCCCCc-------------------ccccCCCCCcEEEcccCcCcccchh
Q 037792 112 YLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIP-------------------SWMGNFSTLQILSMSKNLLEGNIPV 172 (558)
Q Consensus 112 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------------------~~~~~l~~L~~L~L~~n~l~~~~~~ 172 (558)
+++++.+++..+ ......+.......+.+....+ ..+.............|... ...
T Consensus 116 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 191 (384)
T d2omza2 116 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS--DIS 191 (384)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC--CCG
T ss_pred cccccccccccc--ccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccc--ccc
Confidence 666666553322 2233444555544444332211 12233333444444444333 234
Q ss_pred hhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCC
Q 037792 173 QFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQG 252 (558)
Q Consensus 173 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~ 252 (558)
.+..+++++.+++++|.+++..+. ...++|++|++++|.+++. + .+.. +++|+.+++++|.+++
T Consensus 192 ~~~~l~~~~~l~l~~n~i~~~~~~-~~~~~L~~L~l~~n~l~~~-~-~l~~-------------l~~L~~L~l~~n~l~~ 255 (384)
T d2omza2 192 VLAKLTNLESLIATNNQISDITPL-GILTNLDELSLNGNQLKDI-G-TLAS-------------LTNLTDLDLANNQISN 255 (384)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGGG-GGCTTCCEEECCSSCCCCC-G-GGGG-------------CTTCSEEECCSSCCCC
T ss_pred ccccccccceeeccCCccCCCCcc-cccCCCCEEECCCCCCCCc-c-hhhc-------------ccccchhccccCccCC
Confidence 456677788888888877765432 2467788888888877632 2 3333 4566777777777775
Q ss_pred CchhhccCCCCCCEEEcccCcCccccChhhhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCccccc
Q 037792 253 PIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLG 332 (558)
Q Consensus 253 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (558)
.. .+..+++|+.++++++++++..+ +..
T Consensus 256 ~~--~~~~~~~L~~L~l~~~~l~~~~~--~~~------------------------------------------------ 283 (384)
T d2omza2 256 LA--PLSGLTKLTELKLGANQISNISP--LAG------------------------------------------------ 283 (384)
T ss_dssp CG--GGTTCTTCSEEECCSSCCCCCGG--GTT------------------------------------------------
T ss_pred CC--cccccccCCEeeccCcccCCCCc--ccc------------------------------------------------
Confidence 43 37788999999999988863211 111
Q ss_pred cceeeeeecccccccccchhhcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCC
Q 037792 333 ALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHN 412 (558)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 412 (558)
++.++.+++++|.+.+ ...+..++++++|++++|++++..+ +..+++|++|++++|
T Consensus 284 --------------------~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n 339 (384)
T d2omza2 284 --------------------LTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANN 339 (384)
T ss_dssp --------------------CTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSS
T ss_pred --------------------cccccccccccccccc--ccccchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCC
Confidence 5678889999999984 3458889999999999999997643 889999999999999
Q ss_pred cccccCchhcccCCCCCEEecCCCCCcCCCCCCcccCCCCcccccCCC
Q 037792 413 KLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFDESSYRGNL 460 (558)
Q Consensus 413 ~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~~~~~~~N~ 460 (558)
+++. ++ .+.++++|++|++++|++++..| ...++.++.+++++|.
T Consensus 340 ~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~Na 384 (384)
T d2omza2 340 KVSD-VS-SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQA 384 (384)
T ss_dssp CCCC-CG-GGGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCCEE
T ss_pred CCCC-Ch-hHcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeCCCCc
Confidence 9984 44 58999999999999999997655 5667788888888773
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.95 E-value=6.3e-28 Score=234.33 Aligned_cols=248 Identities=27% Similarity=0.427 Sum_probs=180.4
Q ss_pred CccEEEccCCcCCC--CCChhhhhcCCCccEEEccC-CcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCC
Q 037792 9 GLHSLDISRNSFSG--KLPQNMGIVLPKLVYMNISK-NSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLE 85 (558)
Q Consensus 9 ~L~~L~l~~n~l~~--~~p~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 85 (558)
+++.|+|+++.+.| .+|..++. +++|++|+|++ |.++|.+|..|+++++|++|++++|++.+..+ ..+..+.+|+
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~-L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~-~~~~~~~~L~ 128 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLAN-LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP-DFLSQIKTLV 128 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGG-CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC-GGGGGCTTCC
T ss_pred EEEEEECCCCCCCCCCCCChHHhc-Cccccccccccccccccccccccccccccchhhhcccccccccc-ccccchhhhc
Confidence 57778888877775 46777765 78888888875 67777778788888888888888888774333 3446777788
Q ss_pred EEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCC-CEEEccCCcCCCCCcccccCCCCCcEEEcccC
Q 037792 86 WLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTEL-MVLDISNNRLSGHIPSWMGNFSTLQILSMSKN 164 (558)
Q Consensus 86 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 164 (558)
.+++++|.+.+..|..+.++++++.+++++|.+.+..|..+..+..+ +.+++++|++++..|..+..+.. ..++++.+
T Consensus 129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~ 207 (313)
T d1ogqa_ 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSS
T ss_pred ccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 88888887777777778888888888888887777777777777664 77778888777777776666544 36777777
Q ss_pred cCcccchhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEE
Q 037792 165 LLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLL 244 (558)
Q Consensus 165 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~ 244 (558)
...+..|..+..+++++.+++++|.+.+.++....+++|+.|++++|++++.+|..+..+ ++|++|+
T Consensus 208 ~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L-------------~~L~~L~ 274 (313)
T d1ogqa_ 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL-------------KFLHSLN 274 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGC-------------TTCCEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCC-------------CCCCEEE
Confidence 777777777777778888888887777666555567778888888888777777777653 4455555
Q ss_pred ccCCcCCCCchhhccCCCCCCEEEcccCc
Q 037792 245 LRGNYLQGPIPHQLCHLRKLGIMDISHNR 273 (558)
Q Consensus 245 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 273 (558)
+++|+++|.+|+ +..+++|+.+++++|+
T Consensus 275 Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~ 302 (313)
T d1ogqa_ 275 VSFNNLCGEIPQ-GGNLQRFDVSAYANNK 302 (313)
T ss_dssp CCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred CcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence 666667666663 4667777777777776
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.94 E-value=4.2e-25 Score=213.40 Aligned_cols=194 Identities=24% Similarity=0.290 Sum_probs=101.7
Q ss_pred CCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEcc
Q 037792 59 LRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDIS 138 (558)
Q Consensus 59 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~ 138 (558)
.++++.+++.++ .+|..+ .+++++|++++|+++...+.+|.++++|++|++++|.+....+..|.++++|++|+++
T Consensus 12 ~~~~~C~~~~L~-~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~ 87 (305)
T d1xkua_ 12 LRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87 (305)
T ss_dssp TTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCC-ccCCCC---CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence 455566665565 555533 2456666666666664444456666666666666666665556666666666666666
Q ss_pred CCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeecccccccccc--CCCc-CCCCccEEEccCCcCcc
Q 037792 139 NNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSM--ISTL-NLSSVEHLYLQNNALGG 215 (558)
Q Consensus 139 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~--~~~~-~~~~L~~L~l~~n~l~~ 215 (558)
+|+++. +|.. ....++.|++.+|.+.+..+..+.....+..+....|...... ...+ .+++|+.+++++|.+..
T Consensus 88 ~n~l~~-l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~ 164 (305)
T d1xkua_ 88 KNQLKE-LPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 164 (305)
T ss_dssp SSCCSB-CCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCccCc-Cccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc
Confidence 666663 3322 2245666666666666555555555555555555555332211 1111 44555555555554431
Q ss_pred cchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCc
Q 037792 216 SIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLN 275 (558)
Q Consensus 216 ~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 275 (558)
++.. .+++++.|++++|..++..+..+..++.++.|++++|+++
T Consensus 165 -l~~~---------------~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~ 208 (305)
T d1xkua_ 165 -IPQG---------------LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS 208 (305)
T ss_dssp -CCSS---------------CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred -cCcc---------------cCCccCEEECCCCcCCCCChhHhhcccccccccccccccc
Confidence 1111 1233444444444444444444444444445544444443
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.93 E-value=2.4e-24 Score=208.04 Aligned_cols=249 Identities=21% Similarity=0.265 Sum_probs=139.1
Q ss_pred CCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCCCcCCCCccEEEcc
Q 037792 130 TELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQ 209 (558)
Q Consensus 130 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~ 209 (558)
+++++|++++|+++...+.+|.++++|++|++++|.+....|..|.++++|+.|++++|+++..+... .+.++.|++.
T Consensus 31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~--~~~l~~L~~~ 108 (305)
T d1xkua_ 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKTLQELRVH 108 (305)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC--CTTCCEEECC
T ss_pred CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccch--hhhhhhhhcc
Confidence 45555666666555444445555566666666666655455555566666666666666655544332 2456666666
Q ss_pred CCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhcccccc
Q 037792 210 NNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSR 289 (558)
Q Consensus 210 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~ 289 (558)
+|.+.+..+..+.....+..++...+.. ......+..+..+++|+.+++++|.+. .+|..
T Consensus 109 ~n~l~~l~~~~~~~~~~~~~l~~~~n~~-----------~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~-------- 168 (305)
T d1xkua_ 109 ENEITKVRKSVFNGLNQMIVVELGTNPL-----------KSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG-------- 168 (305)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCC-----------CGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSS--------
T ss_pred ccchhhhhhhhhhccccccccccccccc-----------cccCCCccccccccccCccccccCCcc-ccCcc--------
Confidence 6666654444444433333333332210 111223445566666666666666654 11110
Q ss_pred cccCccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCC
Q 037792 290 VENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGD 369 (558)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 369 (558)
.+++|+.|++++|...+.
T Consensus 169 --------------------------------------------------------------~~~~L~~L~l~~n~~~~~ 186 (305)
T d1xkua_ 169 --------------------------------------------------------------LPPSLTELHLDGNKITKV 186 (305)
T ss_dssp --------------------------------------------------------------CCTTCSEEECTTSCCCEE
T ss_pred --------------------------------------------------------------cCCccCEEECCCCcCCCC
Confidence 044566666666666666
Q ss_pred CCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCC-----
Q 037792 370 IPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPD----- 444 (558)
Q Consensus 370 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~----- 444 (558)
.+..|..++.+++|++++|.+++..+..+.++++|++|+|++|+|+ .+|..+..+++|++|++++|+|+...+.
T Consensus 187 ~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~ 265 (305)
T d1xkua_ 187 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 265 (305)
T ss_dssp CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCS
T ss_pred ChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCc
Confidence 6666666666666666666666666666666666777777766666 3455666666677777766666632111
Q ss_pred --CcccCCCCcccccCCCCCC
Q 037792 445 --KEQFSTFDESSYRGNLFLC 463 (558)
Q Consensus 445 --~~~~~~l~~~~~~~N~~~C 463 (558)
.....+++.+++.|||+.+
T Consensus 266 ~~~~~~~~L~~L~L~~N~~~~ 286 (305)
T d1xkua_ 266 GYNTKKASYSGVSLFSNPVQY 286 (305)
T ss_dssp SCCTTSCCCSEEECCSSSSCG
T ss_pred chhcccCCCCEEECCCCcCcc
Confidence 1223455566666666654
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.2e-24 Score=207.81 Aligned_cols=246 Identities=20% Similarity=0.204 Sum_probs=170.0
Q ss_pred EEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccC-Cc
Q 037792 135 LDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQN-NA 212 (558)
Q Consensus 135 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~-n~ 212 (558)
++.++++++ .+|..+. +++++|+|++|+++...+.+|.++++|+.|++++|.+.......+ ....++.+.... +.
T Consensus 16 v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~ 92 (284)
T d1ozna_ 16 TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (284)
T ss_dssp EECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred EEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 344444454 3343332 346666666666665555566666677777777776666555554 556666665543 44
Q ss_pred CcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhccccccccc
Q 037792 213 LGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITNMLFSRVEN 292 (558)
Q Consensus 213 l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~~~~~ 292 (558)
+....+..+.. +++|++|++++|.+....+..+...++|+.+++++|++++..+..|..
T Consensus 93 ~~~l~~~~~~~-------------l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~-------- 151 (284)
T d1ozna_ 93 LRSVDPATFHG-------------LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD-------- 151 (284)
T ss_dssp CCCCCTTTTTT-------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------
T ss_pred cccccchhhcc-------------cccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhcc--------
Confidence 54444555544 344555556666666556667777788888888888887544444433
Q ss_pred CccccccchhhhcccccccCcccchhhhhhccCCCccccccceeeeeecccccccccchhhcccCEEEccCCCCCCCCCc
Q 037792 293 GYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVAVNFMTKNRYESYKGDILELMAGLDLSNNELTGDIPS 372 (558)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 372 (558)
+++|+.|++++|++++..+.
T Consensus 152 ------------------------------------------------------------~~~L~~L~l~~N~l~~l~~~ 171 (284)
T d1ozna_ 152 ------------------------------------------------------------LGNLTHLFLHGNRISSVPER 171 (284)
T ss_dssp ------------------------------------------------------------CTTCCEEECCSSCCCEECTT
T ss_pred ------------------------------------------------------------ccchhhcccccCcccccchh
Confidence 56788888888888877788
Q ss_pred cccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEecCCCCCcCCCCCCcccCCCC
Q 037792 373 EIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDVSYNNLSGPIPDKEQFSTFD 452 (558)
Q Consensus 373 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l~~N~l~~~~p~~~~~~~l~ 452 (558)
.|.++++|+.+++++|++++..|..|.++++|++|++++|++.+..+..|..+++|++|++++|++.|.++..+...+++
T Consensus 172 ~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~l~~~l~ 251 (284)
T d1ozna_ 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQ 251 (284)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHH
T ss_pred hhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccchHHHHHHH
Confidence 88889999999999999998888899999999999999999998888889899999999999999998877544434444
Q ss_pred cccccCCCCCCC
Q 037792 453 ESSYRGNLFLCG 464 (558)
Q Consensus 453 ~~~~~~N~~~C~ 464 (558)
......+...|.
T Consensus 252 ~~~~~~~~~~C~ 263 (284)
T d1ozna_ 252 KFRGSSSEVPCS 263 (284)
T ss_dssp HCCSEECCCBEE
T ss_pred hCcCCCCceEeC
Confidence 444444554453
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=2.3e-24 Score=205.77 Aligned_cols=220 Identities=20% Similarity=0.177 Sum_probs=194.1
Q ss_pred cEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEcc
Q 037792 11 HSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLS 90 (558)
Q Consensus 11 ~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~ 90 (558)
.+++.++.+++ ++|..++ +.+++|+|++|.|+...+.+|.++++|++|++++|.+. .++...+..+..++.+...
T Consensus 14 ~~v~c~~~~L~-~iP~~ip---~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~-~i~~~~~~~~~~~~~l~~~ 88 (284)
T d1ozna_ 14 VTTSCPQQGLQ-AVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS 88 (284)
T ss_dssp CEEECCSSCCS-SCCTTCC---TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred eEEEcCCCCCC-ccCCCCC---CCCCEEECcCCcCCCCCHHHhhcccccccccccccccc-ccccccccccccccccccc
Confidence 45788888898 9998765 57899999999999777788999999999999999998 6777777888999998875
Q ss_pred -CCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCccc
Q 037792 91 -NNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGN 169 (558)
Q Consensus 91 -~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (558)
.+.+....+..|.++++|++|++++|.+....+..+...++|+.+++++|.+++..+..|+.+++|+.|++++|.+...
T Consensus 89 ~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l 168 (284)
T d1ozna_ 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (284)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred cccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCccccc
Confidence 5667766678899999999999999999877777888899999999999999988788899999999999999999988
Q ss_pred chhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCC
Q 037792 170 IPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRIN 235 (558)
Q Consensus 170 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n 235 (558)
.+.+|.++++|+.+++++|.+++..+..+ .+++|++|++++|.+.+..+.++..+++|+.|++++|
T Consensus 169 ~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N 235 (284)
T d1ozna_ 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235 (284)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred chhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCC
Confidence 88899999999999999999998877776 8899999999999999888888887776666666655
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=7.4e-23 Score=193.00 Aligned_cols=202 Identities=19% Similarity=0.156 Sum_probs=170.3
Q ss_pred CcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCC
Q 037792 5 SAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSL 84 (558)
Q Consensus 5 ~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 84 (558)
.+.+.+.++|.++++++ .+|..++ +++++|+|++|.|++..+.+|.++++|++|++++|+++ .++. +..+++|
T Consensus 7 ~~~~~~~~v~C~~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~--~~~l~~L 79 (266)
T d1p9ag_ 7 SKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVL 79 (266)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC--CSCCTTC
T ss_pred cccCCCeEEEccCCCCC-eeCcCcC---cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-cccc--ccccccc
Confidence 45667778899999999 8998764 57999999999999777788999999999999999998 6764 3678999
Q ss_pred CEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccC
Q 037792 85 EWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKN 164 (558)
Q Consensus 85 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 164 (558)
++|++++|++.. .+..+.++++|+.|++++|.+....+..+..+.++++|++++|.+....+..+..+++++.+++++|
T Consensus 80 ~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N 158 (266)
T d1p9ag_ 80 GTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (266)
T ss_dssp CEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred cccccccccccc-cccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccc
Confidence 999999999874 4667888899999999999888777777888889999999999888777777888888999999999
Q ss_pred cCcccchhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCc
Q 037792 165 LLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALG 214 (558)
Q Consensus 165 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~ 214 (558)
++++..+..|..+++|++|+|++|+++.++..++.+++|+.|+|++|.+.
T Consensus 159 ~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred cccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCC
Confidence 88877777788888888888888888877776667788888888888765
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.2e-22 Score=191.51 Aligned_cols=89 Identities=24% Similarity=0.200 Sum_probs=47.3
Q ss_pred hcccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEe
Q 037792 353 LELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFD 432 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~ 432 (558)
+.+++.|++++|.+....+..+..+++|+.|++++|++++..++.|..+++|++|+|++|+|+ .+|..+..+++|+.|+
T Consensus 123 l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~ 201 (266)
T d1p9ag_ 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAF 201 (266)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEE
T ss_pred ccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEE
Confidence 344555555555555444444555555555555555555555555555555555555555555 3444444555555555
Q ss_pred cCCCCCcCCC
Q 037792 433 VSYNNLSGPI 442 (558)
Q Consensus 433 l~~N~l~~~~ 442 (558)
|++|++.|.+
T Consensus 202 L~~Np~~CdC 211 (266)
T d1p9ag_ 202 LHGNPWLCNC 211 (266)
T ss_dssp CCSCCBCCSG
T ss_pred ecCCCCCCCc
Confidence 5555555443
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=3.1e-21 Score=196.80 Aligned_cols=207 Identities=19% Similarity=0.176 Sum_probs=123.1
Q ss_pred CCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCC----CCchhhhCCCCCCEEEcccccCCccchHHHHh----
Q 037792 8 HGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEG----NIPSSIGKMQGLRLLDVSSNNFAGELSQSLVI---- 79 (558)
Q Consensus 8 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---- 79 (558)
.+|++||+++|++++.--..+...++++++|+|++|.++. .++.++..+++|++|+|++|.++..-...+..
T Consensus 2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~ 81 (460)
T d1z7xw1 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 81 (460)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence 3689999999999853334455568999999999999873 33456788999999999999886322222322
Q ss_pred cCCCCCEEEccCCccCccC----chhhcCCCccCeeeccccccccccchhh----c-CCCCCCEEEccCCcCCCCC----
Q 037792 80 NCFSLEWLDLSNNNFVGQI----FPNYMNLTRLWALYLYNNNFSGKIKDGL----L-RSTELMVLDISNNRLSGHI---- 146 (558)
Q Consensus 80 ~l~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~l~~n~i~~~~~~~~----~-~l~~L~~L~L~~n~l~~~~---- 146 (558)
...+|++|++++|.+++.. +..+..+++|++|++++|.+.......+ . ...................
T Consensus 82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (460)
T d1z7xw1 82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 161 (460)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence 2347999999999987542 3456788999999999998864322222 1 1123334444333322111
Q ss_pred cccccCCCCCcEEEcccCcCcccc----hhhhc-CCcccceeeccccccccccCC-----CcCCCCccEEEccCCcCc
Q 037792 147 PSWMGNFSTLQILSMSKNLLEGNI----PVQFN-NLASLQILNISENNLSGSMIS-----TLNLSSVEHLYLQNNALG 214 (558)
Q Consensus 147 ~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~-~l~~L~~L~L~~n~i~~~~~~-----~~~~~~L~~L~l~~n~l~ 214 (558)
...+.....++.++++++...... ...+. .......+.+..+.+...... ....+.++.+++.+|.+.
T Consensus 162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~ 239 (460)
T d1z7xw1 162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 239 (460)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccc
Confidence 012234456777777766554211 11111 122445555555544322111 013466777777777654
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.83 E-value=1.2e-18 Score=171.07 Aligned_cols=179 Identities=27% Similarity=0.290 Sum_probs=97.4
Q ss_pred CccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEE
Q 037792 9 GLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLD 88 (558)
Q Consensus 9 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 88 (558)
++++||++++.++ .+|+. .++|++|++++|+|+ .+|.. ..+|+.|++++|.++ .++. -.+.|++|+
T Consensus 39 ~l~~LdLs~~~L~-~lp~~----~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~----lp~~L~~L~ 104 (353)
T d1jl5a_ 39 QAHELELNNLGLS-SLPEL----PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD----LPPLLEYLG 104 (353)
T ss_dssp TCSEEECTTSCCS-CCCSC----CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS----CCTTCCEEE
T ss_pred CCCEEEeCCCCCC-CCCCC----CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh----hcccccccc
Confidence 5677777777776 67742 467777777777777 44543 346777777777776 4442 123577777
Q ss_pred ccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcc
Q 037792 89 LSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEG 168 (558)
Q Consensus 89 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (558)
+++|.+.. +| .+..+++|++|+++++.+... +. ....+..+.+..+... ....+..++.++.+.+++|....
T Consensus 105 L~~n~l~~-lp-~~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~ 176 (353)
T d1jl5a_ 105 VSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKK 176 (353)
T ss_dssp CCSSCCSS-CC-CCTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSS
T ss_pred cccccccc-cc-chhhhccceeecccccccccc-cc---ccccccchhhcccccc--ccccccccccceecccccccccc
Confidence 77777653 22 345666777777766666432 11 2345555665554433 22334556666666666665542
Q ss_pred cchhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCc
Q 037792 169 NIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALG 214 (558)
Q Consensus 169 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~ 214 (558)
.+. .....+.+...++.+... +....++.++.+++++|...
T Consensus 177 -~~~---~~~~~~~l~~~~~~~~~~-~~~~~l~~L~~l~l~~n~~~ 217 (353)
T d1jl5a_ 177 -LPD---LPLSLESIVAGNNILEEL-PELQNLPFLTTIYADNNLLK 217 (353)
T ss_dssp -CCC---CCTTCCEEECCSSCCSSC-CCCTTCTTCCEEECCSSCCS
T ss_pred -ccc---cccccccccccccccccc-cccccccccccccccccccc
Confidence 111 112233344443333322 12224555666666555443
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=2.8e-20 Score=189.57 Aligned_cols=244 Identities=16% Similarity=0.158 Sum_probs=157.2
Q ss_pred CCccEEEccCCcCCCCC-chhhhCCCCCCEEEcccccCCccchH---HHHhcCCCCCEEEccCCccCccCchhh----c-
Q 037792 33 PKLVYMNISKNSFEGNI-PSSIGKMQGLRLLDVSSNNFAGELSQ---SLVINCFSLEWLDLSNNNFVGQIFPNY----M- 103 (558)
Q Consensus 33 ~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~l~~n~i~~~~~~~~----~- 103 (558)
++|++||+++|++++.. .+.+..++++++|+|++|.++..-.. ..+..+++|++|++++|++++.....+ .
T Consensus 2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~ 81 (460)
T d1z7xw1 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 81 (460)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence 36899999999998532 34467789999999999998732221 234678999999999998864322222 2
Q ss_pred CCCccCeeeccccccccc----cchhhcCCCCCCEEEccCCcCCCCCcccc-----cCCCCCcEEEcccCcCccc----c
Q 037792 104 NLTRLWALYLYNNNFSGK----IKDGLLRSTELMVLDISNNRLSGHIPSWM-----GNFSTLQILSMSKNLLEGN----I 170 (558)
Q Consensus 104 ~l~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----~ 170 (558)
...+|++|++++|.++.. .+..+..+++|++|++++|.+.......+ ................... .
T Consensus 82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (460)
T d1z7xw1 82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 161 (460)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence 235799999999998754 34566778999999999998763222111 1122334444444433211 1
Q ss_pred hhhhcCCcccceeeccccccccccCCC----c--CCCCccEEEccCCcCcccc----hhhhhCCCCCcEEEcCCC-----
Q 037792 171 PVQFNNLASLQILNISENNLSGSMIST----L--NLSSVEHLYLQNNALGGSI----PNTFFRGSALETLDLRIN----- 235 (558)
Q Consensus 171 ~~~~~~l~~L~~L~L~~n~i~~~~~~~----~--~~~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n----- 235 (558)
...+.....++.++++++......... . .......+++..+.+.... ...+...+.++.+++..|
T Consensus 162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~ 241 (460)
T d1z7xw1 162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 241 (460)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccc
Confidence 122345567888888877655321111 1 2345678888887765332 234456678888888876
Q ss_pred -----------CCCCcCEEEccCCcCCCC----chhhccCCCCCCEEEcccCcCcc
Q 037792 236 -----------EHSNLRTLLLRGNYLQGP----IPHQLCHLRKLGIMDISHNRLNG 276 (558)
Q Consensus 236 -----------~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~ 276 (558)
....++.+++++|.+... ....+...+.++.+++++|++..
T Consensus 242 ~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~ 297 (460)
T d1z7xw1 242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 297 (460)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHH
T ss_pred ccchhhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 345788888888877633 22345567778888888887753
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.77 E-value=6.1e-17 Score=158.60 Aligned_cols=183 Identities=25% Similarity=0.248 Sum_probs=134.4
Q ss_pred CCcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCC-CCCCEEEcccccCCccchHHHHhcCC
Q 037792 4 TSAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKM-QGLRLLDVSSNNFAGELSQSLVINCF 82 (558)
Q Consensus 4 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~l~ 82 (558)
++.+++|++|++++|+++ .+|.. ..+|+.|++++|.++. ++ .+ +.|++|++++|.++ .+|. +..++
T Consensus 54 p~~~~~L~~L~Ls~N~l~-~lp~~----~~~L~~L~l~~n~l~~-l~----~lp~~L~~L~L~~n~l~-~lp~--~~~l~ 120 (353)
T d1jl5a_ 54 PELPPHLESLVASCNSLT-ELPEL----PQSLKSLLVDNNNLKA-LS----DLPPLLEYLGVSNNQLE-KLPE--LQNSS 120 (353)
T ss_dssp CSCCTTCSEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSC-CC----SCCTTCCEEECCSSCCS-SCCC--CTTCT
T ss_pred CCCCCCCCEEECCCCCCc-ccccc----hhhhhhhhhhhcccch-hh----hhccccccccccccccc-cccc--hhhhc
Confidence 455689999999999999 89864 4689999999999883 33 23 46999999999998 6775 36799
Q ss_pred CCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcc
Q 037792 83 SLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMS 162 (558)
Q Consensus 83 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 162 (558)
+|++|+++++.+.... .....+..+.+..+... ....+..++.++.+++++|..... +. .....+.+...
T Consensus 121 ~L~~L~l~~~~~~~~~----~~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~~-~~---~~~~~~~l~~~ 190 (353)
T d1jl5a_ 121 FLKIIDVDNNSLKKLP----DLPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKKL-PD---LPLSLESIVAG 190 (353)
T ss_dssp TCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSSC-CC---CCTTCCEEECC
T ss_pred cceeeccccccccccc----cccccccchhhcccccc--ccccccccccceeccccccccccc-cc---ccccccccccc
Confidence 9999999999886432 23456677777666553 345567789999999999987732 22 12335666766
Q ss_pred cCcCcccchhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCc
Q 037792 163 KNLLEGNIPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALG 214 (558)
Q Consensus 163 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~ 214 (558)
++.+. ..+ .+..++.|+.+++++|.....+. ...++..+.+..+.+.
T Consensus 191 ~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~~~~---~~~~l~~~~~~~~~~~ 237 (353)
T d1jl5a_ 191 NNILE-ELP-ELQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLT 237 (353)
T ss_dssp SSCCS-SCC-CCTTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSCCS
T ss_pred ccccc-ccc-ccccccccccccccccccccccc---cccccccccccccccc
Confidence 66655 333 35678999999999988765432 3456778888777665
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=5.6e-19 Score=163.78 Aligned_cols=213 Identities=13% Similarity=0.080 Sum_probs=143.7
Q ss_pred ccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEc
Q 037792 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDL 89 (558)
Q Consensus 10 L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 89 (558)
.++++.++.+++ .+|..++ +++++|++++|.|+...+.+|.++++|++|++++|.+...++...|.++++++++.+
T Consensus 10 ~~~i~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~ 85 (242)
T d1xwdc1 10 NRVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 85 (242)
T ss_dssp SSEEEEESCSCS-SCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred CCEEEEeCCCCC-CcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccc
Confidence 367888888888 8887764 478899999999886666678889999999999988876677666777888888887
Q ss_pred cC-CccCccCchhhcCCCccCeeeccccccccccch-hhcCCCCCCEEEccCCcCCCCCcccccCCC-CCcEEEcccCcC
Q 037792 90 SN-NNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKD-GLLRSTELMVLDISNNRLSGHIPSWMGNFS-TLQILSMSKNLL 166 (558)
Q Consensus 90 ~~-n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l 166 (558)
.. |.+....+..|.++++|+++++++|.+....+. .+..+..++.+...++.+....+..|.+++ .++.|++++|++
T Consensus 86 ~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l 165 (242)
T d1xwdc1 86 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 165 (242)
T ss_dssp ECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred cccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccc
Confidence 64 566666666778888888888888877643222 233345555555566666655555565554 677777777777
Q ss_pred cccchhhhcCCcccce-eeccccccccccCCCc-CCCCccEEEccCCcCcccchhhhhCCCCC
Q 037792 167 EGNIPVQFNNLASLQI-LNISENNLSGSMISTL-NLSSVEHLYLQNNALGGSIPNTFFRGSAL 227 (558)
Q Consensus 167 ~~~~~~~~~~l~~L~~-L~L~~n~i~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 227 (558)
+...+..+.. .++.. +.+++|.++..+...+ .+++|++|++++|+++...+..|..++.|
T Consensus 166 ~~i~~~~~~~-~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 227 (242)
T d1xwdc1 166 QEIHNCAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL 227 (242)
T ss_dssp CEECTTTTTT-CCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEE
T ss_pred cccccccccc-hhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCccc
Confidence 7544444433 34333 3456667776665554 66777777777777764434344433333
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.74 E-value=2.4e-17 Score=150.88 Aligned_cols=205 Identities=18% Similarity=0.218 Sum_probs=154.4
Q ss_pred ccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEc
Q 037792 10 LHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDL 89 (558)
Q Consensus 10 L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l 89 (558)
+..++++.+.+++.++. . .+.+|+.|++.+|.|+.. +.+.++++|++|++++|.++ .+++ +..+++++++++
T Consensus 21 ~~~~~l~~~~~~d~~~~--~-~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~-~~~~--l~~l~~l~~l~~ 92 (227)
T d1h6ua2 21 AIKIAAGKSNVTDTVTQ--A-DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELEL 92 (227)
T ss_dssp HHHHHTTCSSTTSEECH--H-HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEEC
T ss_pred HHHHHhCCCCcCCcCCH--H-HcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceee-cccc--cccccccccccc
Confidence 34456777777744322 2 267889999999998854 36888999999999999988 4443 578889999999
Q ss_pred cCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCccc
Q 037792 90 SNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGN 169 (558)
Q Consensus 90 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 169 (558)
++|.++. .+.+.++++|+.++++++..... ..+...+.++.+.++++.+.... .+.++++|+.|++++|.+.+.
T Consensus 93 ~~n~~~~--i~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~ 166 (227)
T d1h6ua2 93 SGNPLKN--VSAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDL 166 (227)
T ss_dssp CSCCCSC--CGGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCC
T ss_pred ccccccc--ccccccccccccccccccccccc--chhccccchhhhhchhhhhchhh--hhccccccccccccccccccc
Confidence 9988874 34678899999999988877643 34667788899999888877432 366788899999999988743
Q ss_pred chhhhcCCcccceeeccccccccccCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcC
Q 037792 170 IPVQFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLR 233 (558)
Q Consensus 170 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 233 (558)
..++++++|+.|++++|++++.++ +..+++|++|++++|++++.. .+..+++|+.|+++
T Consensus 167 --~~l~~l~~L~~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~ls 225 (227)
T d1h6ua2 167 --TPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT 225 (227)
T ss_dssp --GGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred --hhhcccccceecccCCCccCCChh-hcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEee
Confidence 347888999999999998876543 347889999999999988543 26677777777664
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.73 E-value=4e-18 Score=151.59 Aligned_cols=88 Identities=24% Similarity=0.401 Sum_probs=41.8
Q ss_pred cccCEEEccCCCCCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEec
Q 037792 354 ELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFDV 433 (558)
Q Consensus 354 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~l 433 (558)
++|+.|++++|.+....+..|..+++|++|+|++|++++..++.|.++++|++|+|++|+|+.+.++.|..+++|++|++
T Consensus 54 ~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L 133 (192)
T d1w8aa_ 54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133 (192)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred ceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccc
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred CCCCCcCC
Q 037792 434 SYNNLSGP 441 (558)
Q Consensus 434 ~~N~l~~~ 441 (558)
++|++.+.
T Consensus 134 ~~N~~~~~ 141 (192)
T d1w8aa_ 134 ASNPFNCN 141 (192)
T ss_dssp TTCCBCCS
T ss_pred cccccccc
Confidence 44444443
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.72 E-value=1.5e-16 Score=145.45 Aligned_cols=207 Identities=19% Similarity=0.266 Sum_probs=158.1
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeec
Q 037792 34 KLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYL 113 (558)
Q Consensus 34 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 113 (558)
++..++++.+.+++.. .+..+.+|+.|++.+|.++ .++ . +..+++|++|++++|.+.+.. .+..+++++.+++
T Consensus 20 ~~~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~-~l~-~-l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~ 92 (227)
T d1h6ua2 20 NAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-G-VQYLNNLIGLELKDNQITDLA--PLKNLTKITELEL 92 (227)
T ss_dssp HHHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEEC
T ss_pred HHHHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCC-cch-h-HhcCCCCcEeecCCceeeccc--ccccccccccccc
Confidence 3445567777777543 4677888999999999998 564 3 478999999999999987633 4889999999999
Q ss_pred cccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccc
Q 037792 114 YNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGS 193 (558)
Q Consensus 114 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~ 193 (558)
++|.++.. ..+.++++|+.++++++...+. ..+...+.++.+.++++.+... ..+..+++|+.|++++|.+...
T Consensus 93 ~~n~~~~i--~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~ 166 (227)
T d1h6ua2 93 SGNPLKNV--SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL 166 (227)
T ss_dssp CSCCCSCC--GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC
T ss_pred cccccccc--cccccccccccccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccc
Confidence 99988743 4578899999999999887743 3366778899999988887643 3467788999999999988754
Q ss_pred cCCCcCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCCchhhccCCCCCCEEEccc
Q 037792 194 MISTLNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGPIPHQLCHLRKLGIMDISH 271 (558)
Q Consensus 194 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 271 (558)
.. +..+++|++|++++|++++. + .+.. +++|++|++++|++++.. .+.++++|++|++++
T Consensus 167 ~~-l~~l~~L~~L~Ls~n~l~~l-~-~l~~-------------l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 167 TP-LANLSKLTTLKADDNKISDI-S-PLAS-------------LPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTN 226 (227)
T ss_dssp GG-GTTCTTCCEEECCSSCCCCC-G-GGGG-------------CTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEE
T ss_pred hh-hcccccceecccCCCccCCC-h-hhcC-------------CCCCCEEECcCCcCCCCc--ccccCCCCCEEEeeC
Confidence 43 33789999999999988753 3 2443 466777777778887543 388999999999874
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.71 E-value=8.2e-17 Score=145.14 Aligned_cols=181 Identities=22% Similarity=0.324 Sum_probs=132.1
Q ss_pred EEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCC
Q 037792 13 LDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNN 92 (558)
Q Consensus 13 L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n 92 (558)
.++..+.+++.++.. .+.+|++|++++|.++.. ..+..+++|++|++++|+++ .++. +..+++|++|++++|
T Consensus 29 ~~l~~~~~~~~~~~~---~L~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~-~l~~--~~~l~~L~~L~l~~n 100 (210)
T d1h6ta2 29 DNLKKKSVTDAVTQN---ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDEN 100 (210)
T ss_dssp HHTTCSCTTSEECHH---HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSS
T ss_pred HHhCcCccCCccCHH---HhcCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCcccc-Cccc--cccCccccccccccc
Confidence 355566666445432 145788888888888743 24778888888888888887 4553 367888888888888
Q ss_pred ccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchh
Q 037792 93 NFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPV 172 (558)
Q Consensus 93 ~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 172 (558)
++++ .+.+.++++|+.|++++|.+.. ...+..+++++.+++++|.+++ +..+..+++|+.+++++|++.+. +
T Consensus 101 ~i~~--l~~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~- 172 (210)
T d1h6ta2 101 KVKD--LSSLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V- 172 (210)
T ss_dssp CCCC--GGGGTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-
T ss_pred cccc--cccccccccccccccccccccc--cccccccccccccccccccccc--ccccccccccccccccccccccc-c-
Confidence 8875 2357888888888888887753 3457778888888888888773 33466788888888888888743 2
Q ss_pred hhcCCcccceeeccccccccccCCCcCCCCccEEEccC
Q 037792 173 QFNNLASLQILNISENNLSGSMISTLNLSSVEHLYLQN 210 (558)
Q Consensus 173 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L~l~~ 210 (558)
.+.++++|++|++++|.++..+ ....+++|++|++++
T Consensus 173 ~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 173 PLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp GGTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEEE
T ss_pred cccCCCCCCEEECCCCCCCCCh-hhcCCCCCCEEEccC
Confidence 3778888888888888887653 334778888888764
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.70 E-value=1.8e-16 Score=141.56 Aligned_cols=178 Identities=24% Similarity=0.336 Sum_probs=134.3
Q ss_pred EEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccC
Q 037792 12 SLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSN 91 (558)
Q Consensus 12 ~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~ 91 (558)
...++.+.+++.++.. .++++++|++++|.++.. +.++.+++|++|++++|+++ .++. +.++++|++|++++
T Consensus 22 ~~~l~~~~~~~~~~~~---~l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~-~~~~--l~~l~~L~~L~l~~ 93 (199)
T d2omxa2 22 KTVLGKTNVTDTVSQT---DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNN 93 (199)
T ss_dssp HHHTTCSSTTSEECHH---HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCS
T ss_pred HHHhCCCCCCCccCHH---HhcCCCEEECCCCCCCCc--cccccCCCcCcCcccccccc-Cccc--ccCCcccccccccc
Confidence 4456677777433322 267889999999888743 35788889999999999888 4554 57888999999998
Q ss_pred CccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccch
Q 037792 92 NNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIP 171 (558)
Q Consensus 92 n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 171 (558)
|.+... +.+.++++|+.|+++++..... ..+..+++|+.|++++|++.. .+ .+..+++|+.|++.+|++++. +
T Consensus 94 n~~~~~--~~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~l-~ 166 (199)
T d2omxa2 94 NQIADI--TPLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLNFSSNQVTDL-K 166 (199)
T ss_dssp SCCCCC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCC-G
T ss_pred cccccc--cccccccccccccccccccccc--cccchhhhhHHhhhhhhhhcc-cc-cccccccccccccccccccCC-c
Confidence 887642 3578889999999988887643 457788899999999988873 33 477888999999999988753 2
Q ss_pred hhhcCCcccceeeccccccccccCCCcCCCCccEE
Q 037792 172 VQFNNLASLQILNISENNLSGSMISTLNLSSVEHL 206 (558)
Q Consensus 172 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~~~L~~L 206 (558)
.++++++|+.|++++|++++.. ....+++|++|
T Consensus 167 -~l~~l~~L~~L~ls~N~i~~i~-~l~~L~~L~~L 199 (199)
T d2omxa2 167 -PLANLTTLERLDISSNKVSDIS-VLAKLTNLESL 199 (199)
T ss_dssp -GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEE
T ss_pred -cccCCCCCCEEECCCCCCCCCc-cccCCCCCCcC
Confidence 4788899999999999887653 23367777765
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.70 E-value=2.1e-17 Score=146.89 Aligned_cols=130 Identities=15% Similarity=0.266 Sum_probs=77.8
Q ss_pred CccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCC-CCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEE
Q 037792 9 GLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEG-NIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWL 87 (558)
Q Consensus 9 ~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 87 (558)
..++++.++++++ .+|..++ +++++|+|++|.|+. ..+..|.++++|++|++++|.++ .++...+..+++|++|
T Consensus 9 ~~~~v~Cs~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~-~~~~~~~~~~~~L~~L 83 (192)
T d1w8aa_ 9 EGTTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQEL 83 (192)
T ss_dssp ETTEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEE
T ss_pred cCCEEEEeCCCcC-ccCCCCC---CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccc-ccccccccccccccee
Confidence 3456777777777 7776653 467777777777754 33445666666666666666666 4444444556666666
Q ss_pred EccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEEccCCcCC
Q 037792 88 DLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLDISNNRLS 143 (558)
Q Consensus 88 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 143 (558)
++++|++....+..|.++++|++|+|++|.+++..+++|..+++|++|++++|.+.
T Consensus 84 ~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~ 139 (192)
T d1w8aa_ 84 QLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp ECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred eeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence 66666665554555555555555555555555555555555555555555555444
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.69 E-value=4.2e-16 Score=140.40 Aligned_cols=180 Identities=19% Similarity=0.277 Sum_probs=131.0
Q ss_pred EEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeeccccc
Q 037792 38 MNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNN 117 (558)
Q Consensus 38 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 117 (558)
..++.+.+++.++. ..+.+|++|++++|.++ .++. +..+++|++|++++|++++.. .+..+++|+.|++++|.
T Consensus 29 ~~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~-~l~~--l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~ 101 (210)
T d1h6ta2 29 DNLKKKSVTDAVTQ--NELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENK 101 (210)
T ss_dssp HHTTCSCTTSEECH--HHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSC
T ss_pred HHhCcCccCCccCH--HHhcCccEEECcCCCCC-Cchh--HhhCCCCCEEeCCCccccCcc--ccccCcccccccccccc
Confidence 45566666654432 35667888888888887 4443 367888888888888887532 46788888888888888
Q ss_pred cccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCCC
Q 037792 118 FSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMIST 197 (558)
Q Consensus 118 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~ 197 (558)
+++. + .+..+++|+.|++++|.+.. . ..+.++++++.+++++|.+.+. ..+..+++|+.+++++|.+++..+ .
T Consensus 102 i~~l-~-~l~~l~~L~~L~l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~i~~-l 174 (210)
T d1h6ta2 102 VKDL-S-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-L 174 (210)
T ss_dssp CCCG-G-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-G
T ss_pred cccc-c-cccccccccccccccccccc-c-cccccccccccccccccccccc--cccccccccccccccccccccccc-c
Confidence 8743 3 47778888888888888763 2 3477788888888888887732 346678888888888888876543 3
Q ss_pred cCCCCccEEEccCCcCcccchhhhhCCCCCcEEEcC
Q 037792 198 LNLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLR 233 (558)
Q Consensus 198 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 233 (558)
..+++|++|++++|.+++ ++ .+..+++|+.|+++
T Consensus 175 ~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 175 AGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF 208 (210)
T ss_dssp TTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred cCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence 377888888888888874 33 46776777777664
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=3.7e-17 Score=151.26 Aligned_cols=200 Identities=17% Similarity=0.104 Sum_probs=155.6
Q ss_pred CCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCC-CchhhhCCCCCCEEEccc-ccCCccchHHHHhcCCCCC
Q 037792 8 HGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGN-IPSSIGKMQGLRLLDVSS-NNFAGELSQSLVINCFSLE 85 (558)
Q Consensus 8 ~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~ 85 (558)
+++++|++++|.++ .+|...+.++++|++|++++|.+... .+.+|.++++++++.+.. |.+. .++...+.++++|+
T Consensus 29 ~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~-~~~~~~~~~l~~L~ 106 (242)
T d1xwdc1 29 RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQ 106 (242)
T ss_dssp SCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCC-EECTTSEECCTTCC
T ss_pred CCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccc-cccccccccccccc
Confidence 58999999999998 89988888899999999999998754 356789999999999875 5666 66666778999999
Q ss_pred EEEccCCccCccCch-hhcCCCccCeeeccccccccccchhhcCCC-CCCEEEccCCcCCCCCcccccCCCCCcEE-Ecc
Q 037792 86 WLDLSNNNFVGQIFP-NYMNLTRLWALYLYNNNFSGKIKDGLLRST-ELMVLDISNNRLSGHIPSWMGNFSTLQIL-SMS 162 (558)
Q Consensus 86 ~L~l~~n~i~~~~~~-~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L-~L~ 162 (558)
++++++|.+....+. .+..++.+..+...++.+....+..+.+++ .++.|++++|+++...+..+. .++++.+ .++
T Consensus 107 ~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~ 185 (242)
T d1xwdc1 107 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFN-GTQLDELNLSD 185 (242)
T ss_dssp EEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTT-TCCEEEEECTT
T ss_pred ccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccccccccc-chhhhcccccc
Confidence 999999998753322 344556666667777778766667777664 899999999999965555554 4555555 578
Q ss_pred cCcCcccchhhhcCCcccceeeccccccccccCCCc-CCCCccEEEccC
Q 037792 163 KNLLEGNIPVQFNNLASLQILNISENNLSGSMISTL-NLSSVEHLYLQN 210 (558)
Q Consensus 163 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~~~L~~L~l~~ 210 (558)
+|.++...+..|.++++|+.|++++|+++..+...+ .+++|+.+++.+
T Consensus 186 ~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~ 234 (242)
T d1xwdc1 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN 234 (242)
T ss_dssp CTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred ccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence 888986666678999999999999999998877655 566666555543
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.67 E-value=7.3e-16 Score=137.58 Aligned_cols=178 Identities=24% Similarity=0.310 Sum_probs=131.1
Q ss_pred EEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeecccc
Q 037792 37 YMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNN 116 (558)
Q Consensus 37 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n 116 (558)
...++.+.+++..+ ...+.++++|++++|.++ .++. +..+++|++|++++|++++.. .+.++++|++|++++|
T Consensus 22 ~~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~-~l~~--l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n 94 (199)
T d2omxa2 22 KTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNN 94 (199)
T ss_dssp HHHTTCSSTTSEEC--HHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSS
T ss_pred HHHhCCCCCCCccC--HHHhcCCCEEECCCCCCC-Cccc--cccCCCcCcCccccccccCcc--cccCCccccccccccc
Confidence 44566676664433 346778888898888887 5543 367888899999888887533 3788888899998888
Q ss_pred ccccccchhhcCCCCCCEEEccCCcCCCCCcccccCCCCCcEEEcccCcCcccchhhhcCCcccceeeccccccccccCC
Q 037792 117 NFSGKIKDGLLRSTELMVLDISNNRLSGHIPSWMGNFSTLQILSMSKNLLEGNIPVQFNNLASLQILNISENNLSGSMIS 196 (558)
Q Consensus 117 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 196 (558)
.+... ..+.++++|+.|++++|..... ..+..+++|+.|++++|++.. . ..+..+++|+.|++.+|.+++..+
T Consensus 95 ~~~~~--~~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l~~- 167 (199)
T d2omxa2 95 QIADI--TPLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDLKP- 167 (199)
T ss_dssp CCCCC--GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCCGG-
T ss_pred ccccc--cccccccccccccccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCCcc-
Confidence 87643 2477888888998888887743 346778888899998888863 3 357788888899988888876542
Q ss_pred CcCCCCccEEEccCCcCcccchhhhhCCCCCcEE
Q 037792 197 TLNLSSVEHLYLQNNALGGSIPNTFFRGSALETL 230 (558)
Q Consensus 197 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 230 (558)
...+++|++|++++|++++ ++ .+..+++|+.|
T Consensus 168 l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L 199 (199)
T d2omxa2 168 LANLTTLERLDISSNKVSD-IS-VLAKLTNLESL 199 (199)
T ss_dssp GTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred ccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence 3478888999998888874 33 46666776654
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=7.6e-16 Score=145.56 Aligned_cols=255 Identities=16% Similarity=0.159 Sum_probs=170.1
Q ss_pred cEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEcc
Q 037792 11 HSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLS 90 (558)
Q Consensus 11 ~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~ 90 (558)
+++|++++.+.+.....+.. ..+..+.++...+..... ......+|++|+++++.++......++..+++|++|+++
T Consensus 3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~ 79 (284)
T d2astb2 3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 79 (284)
T ss_dssp SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred CEEECCCCCCCchHHHHHHh--ccceEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccc
Confidence 57899998876444444543 356677777766553322 334556899999999998866666778899999999999
Q ss_pred CCccCccCchhhcCCCccCeeecccc-cccccc-chhhcCCCCCCEEEccCCc-CCCC-Cccccc-CCCCCcEEEcccCc
Q 037792 91 NNNFVGQIFPNYMNLTRLWALYLYNN-NFSGKI-KDGLLRSTELMVLDISNNR-LSGH-IPSWMG-NFSTLQILSMSKNL 165 (558)
Q Consensus 91 ~n~i~~~~~~~~~~l~~L~~L~l~~n-~i~~~~-~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~-~l~~L~~L~L~~n~ 165 (558)
++.+.+..+..+..+++|++|+++++ .++... ......+++|++|++++|. ++.. ....+. ..++|+.|+++++.
T Consensus 80 ~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 159 (284)
T d2astb2 80 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 159 (284)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred ccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccc
Confidence 99988777888999999999999995 454322 2234568999999999874 3321 112232 35789999998753
Q ss_pred --Cccc-chhhhcCCcccceeeccccc-cccccCCCc-CCCCccEEEccCC-cCcccchhhhhCCCCCcEEEcCCCCCCC
Q 037792 166 --LEGN-IPVQFNNLASLQILNISENN-LSGSMISTL-NLSSVEHLYLQNN-ALGGSIPNTFFRGSALETLDLRINEHSN 239 (558)
Q Consensus 166 --l~~~-~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~-~~~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 239 (558)
+++. +......+++|++|++++|. +++.....+ .+++|++|++++| .+++.....+..+ ++
T Consensus 160 ~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~-------------~~ 226 (284)
T d2astb2 160 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI-------------PT 226 (284)
T ss_dssp GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC-------------TT
T ss_pred cccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcC-------------CC
Confidence 4322 23334678999999999874 554444333 7899999999996 5665555555554 45
Q ss_pred cCEEEccCCcCCCCchhhccCCCCCCEEEcccCcCccccChhhhc
Q 037792 240 LRTLLLRGNYLQGPIPHQLCHLRKLGIMDISHNRLNGSIPACITN 284 (558)
Q Consensus 240 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 284 (558)
|+.|+++++.-.+.+......+++|+ +..+++++..++.+++
T Consensus 227 L~~L~l~~~~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~~~~~ 268 (284)
T d2astb2 227 LKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGN 268 (284)
T ss_dssp CCEEECTTSSCTTCHHHHHHHSTTSE---ESCCCSCCTTCSSCSS
T ss_pred CCEEeeeCCCCHHHHHHHHHhCcccc---ccCccCCCCCCCccCc
Confidence 55555555521222333334456654 4666676555554443
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=1.1e-15 Score=144.57 Aligned_cols=179 Identities=19% Similarity=0.237 Sum_probs=96.7
Q ss_pred CCCccEEEccCCcCCCC-CchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCC-ccCccCch-hhcCCCcc
Q 037792 32 LPKLVYMNISKNSFEGN-IPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNN-NFVGQIFP-NYMNLTRL 108 (558)
Q Consensus 32 l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~i~~~~~~-~~~~l~~L 108 (558)
..+|++||++++.++.. +...+..+++|++|+++++.+++..+..+ ..+++|++|++++| .+++.... ...++++|
T Consensus 45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l-~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L 123 (284)
T d2astb2 45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123 (284)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHH-hcCCCCcCccccccccccccccchhhHHHHhc
Confidence 44666677766665532 23345566667777776666654444443 45666777776664 33322111 23456667
Q ss_pred Ceeeccccc-cccc-cchhhcC-CCCCCEEEccCCc--CCCC-CcccccCCCCCcEEEcccCc-CcccchhhhcCCcccc
Q 037792 109 WALYLYNNN-FSGK-IKDGLLR-STELMVLDISNNR--LSGH-IPSWMGNFSTLQILSMSKNL-LEGNIPVQFNNLASLQ 181 (558)
Q Consensus 109 ~~L~l~~n~-i~~~-~~~~~~~-l~~L~~L~L~~n~--l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 181 (558)
++|+++++. ++.. ....+.. .++|+.|+++++. ++.. +...+.++++|++|++++|. +++.....+..+++|+
T Consensus 124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~ 203 (284)
T d2astb2 124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ 203 (284)
T ss_dssp CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred cccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCC
Confidence 777766643 3211 1112222 3567777776542 2211 12223456677777776653 5545555666667777
Q ss_pred eeecccc-ccccccCCCc-CCCCccEEEccCC
Q 037792 182 ILNISEN-NLSGSMISTL-NLSSVEHLYLQNN 211 (558)
Q Consensus 182 ~L~L~~n-~i~~~~~~~~-~~~~L~~L~l~~n 211 (558)
+|++++| .+++.....+ .+++|++|+++++
T Consensus 204 ~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 204 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp EEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred EEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 7777764 4443332222 5677777777776
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=5e-15 Score=126.79 Aligned_cols=110 Identities=19% Similarity=0.215 Sum_probs=66.4
Q ss_pred CcCCCccEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCC
Q 037792 5 SAQHGLHSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSL 84 (558)
Q Consensus 5 ~~~~~L~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 84 (558)
.++.++++|||++|.++ .++. ++..+++|++|++++|.|+.. +.+..+++|++|++++|+++ .++..++..+++|
T Consensus 15 ~n~~~lr~L~L~~n~I~-~i~~-~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~L 89 (162)
T d1a9na_ 15 TNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDL 89 (162)
T ss_dssp ECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTC
T ss_pred cCcCcCcEEECCCCCCC-ccCc-cccccccCCEEECCCCCCCcc--CCcccCcchhhhhccccccc-CCCcccccccccc
Confidence 35556677777777776 5653 334466777777777776633 24666667777777777766 5555555566666
Q ss_pred CEEEccCCccCccC-chhhcCCCccCeeeccccccc
Q 037792 85 EWLDLSNNNFVGQI-FPNYMNLTRLWALYLYNNNFS 119 (558)
Q Consensus 85 ~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l~~n~i~ 119 (558)
++|++++|++.... ...+..+++|++|++++|.++
T Consensus 90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~ 125 (162)
T d1a9na_ 90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 125 (162)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred ccceeccccccccccccccccccccchhhcCCCccc
Confidence 66666666665421 124455555555555555554
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.51 E-value=6.8e-14 Score=113.63 Aligned_cols=102 Identities=22% Similarity=0.321 Sum_probs=69.7
Q ss_pred cEEEccCCcCCCCCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEcc
Q 037792 11 HSLDISRNSFSGKLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLS 90 (558)
Q Consensus 11 ~~L~l~~n~l~~~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~ 90 (558)
|+|++++|+++ .++. + ..+++|++|++++|.++ .+|..++.+++|++|++++|.++ .++. +..+++|++|+++
T Consensus 1 R~L~Ls~n~l~-~l~~-l-~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~~--~~~l~~L~~L~l~ 73 (124)
T d1dcea3 1 RVLHLAHKDLT-VLCH-L-EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG--VANLPRLQELLLC 73 (124)
T ss_dssp SEEECTTSCCS-SCCC-G-GGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEEECC
T ss_pred CEEEcCCCCCC-CCcc-c-ccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccCc--cccccccCeEECC
Confidence 56777888777 6663 3 34777777777777777 45666777777777777777777 4553 4667777777777
Q ss_pred CCccCccC-chhhcCCCccCeeeccccccc
Q 037792 91 NNNFVGQI-FPNYMNLTRLWALYLYNNNFS 119 (558)
Q Consensus 91 ~n~i~~~~-~~~~~~l~~L~~L~l~~n~i~ 119 (558)
+|++.... ...+..+++|+.|++++|.++
T Consensus 74 ~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 74 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CCccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence 77776432 235666666777777766664
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=6.6e-14 Score=118.82 Aligned_cols=112 Identities=19% Similarity=0.198 Sum_probs=96.1
Q ss_pred cccCEEEccCCCCCCCCCccccCccCCCeeeccCC-cCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEEe
Q 037792 354 ELMAGLDLSNNELTGDIPSEIGDLQNIHGLNLSHN-FLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTFD 432 (558)
Q Consensus 354 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L~ 432 (558)
...+.++.+++++. ..|..+..+++|++|++++| .++...++.|.++++|+.|++++|+|+.+.+..|..+++|++|+
T Consensus 8 ~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 86 (156)
T d2ifga3 8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86 (156)
T ss_dssp SSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred CCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence 34566889998888 56777888999999999876 48877788899999999999999999988899999999999999
Q ss_pred cCCCCCcCCCCCCcccCCCCcccccCCCCCCCCC
Q 037792 433 VSYNNLSGPIPDKEQFSTFDESSYRGNLFLCGPA 466 (558)
Q Consensus 433 l~~N~l~~~~p~~~~~~~l~~~~~~~N~~~C~~~ 466 (558)
|++|+++...+.......+..+++++||+.|+|.
T Consensus 87 Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~C~C~ 120 (156)
T d2ifga3 87 LSFNALESLSWKTVQGLSLQELVLSGNPLHCSCA 120 (156)
T ss_dssp CCSSCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred ccCCCCcccChhhhccccccccccCCCcccCCch
Confidence 9999999655554444578899999999999995
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.50 E-value=1.7e-14 Score=140.51 Aligned_cols=252 Identities=19% Similarity=0.240 Sum_probs=163.3
Q ss_pred chhhcCCCCCCEEEccCCcCCCCC----cccccCCCCCcEEEcccCcCccc----------chhhhcCCcccceeecccc
Q 037792 123 KDGLLRSTELMVLDISNNRLSGHI----PSWMGNFSTLQILSMSKNLLEGN----------IPVQFNNLASLQILNISEN 188 (558)
Q Consensus 123 ~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~----------~~~~~~~l~~L~~L~L~~n 188 (558)
...+.....|+.|++++|.+.... ...+...++|+.++++++..... +...+...++|+.|++++|
T Consensus 24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n 103 (344)
T d2ca6a1 24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 103 (344)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc
Confidence 445667789999999999876432 23456678999999987754311 2233456778999999988
Q ss_pred ccccccCCCc-----CCCCccEEEccCCcCcccchhhhhCCCCCcEEEcC--CCCCCCcCEEEccCCcCCCC----chhh
Q 037792 189 NLSGSMISTL-----NLSSVEHLYLQNNALGGSIPNTFFRGSALETLDLR--INEHSNLRTLLLRGNYLQGP----IPHQ 257 (558)
Q Consensus 189 ~i~~~~~~~~-----~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~--~n~~~~L~~L~l~~n~l~~~----~~~~ 257 (558)
.+.......+ ..++|++|++++|.+.......+.. .+..+... ....+.|+.+.+++|.++.. +...
T Consensus 104 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~--~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~ 181 (344)
T d2ca6a1 104 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--ALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 181 (344)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--HHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred ccccccccchhhhhcccccchheecccccccccccccccc--cccccccccccccCcccceeecccccccccccccccch
Confidence 8765322221 5678889999888775332222111 00000000 00245677777777777633 3344
Q ss_pred ccCCCCCCEEEcccCcCccccChh-hhcccccccccCccccccchhhhcccccccCcccchhhhhhccCCCcccccccee
Q 037792 258 LCHLRKLGIMDISHNRLNGSIPAC-ITNMLFSRVENGYLYGFDIVLRMYLDDAYVSNYYNSTVELLLDGNDGRMLGALVA 336 (558)
Q Consensus 258 ~~~l~~L~~L~l~~n~l~~~~p~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (558)
+..++.|+.|++++|++....... +...
T Consensus 182 l~~~~~L~~L~L~~n~i~~~g~~~~l~~~--------------------------------------------------- 210 (344)
T d2ca6a1 182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEG--------------------------------------------------- 210 (344)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTT---------------------------------------------------
T ss_pred hhhhhhhcccccccccccccccccchhhh---------------------------------------------------
Confidence 667889999999999885321100 0000
Q ss_pred eeeecccccccccchhhcccCEEEccCCCCCCC----CCccccCccCCCeeeccCCcCCccchhhh----hc--cccCCe
Q 037792 337 VNFMTKNRYESYKGDILELMAGLDLSNNELTGD----IPSEIGDLQNIHGLNLSHNFLSGSIPESF----SN--LKMIES 406 (558)
Q Consensus 337 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~----~~--l~~L~~ 406 (558)
+ ...++|+.|++++|.++.. +...+..+++|++|+|++|.+++.....+ .. .+.|++
T Consensus 211 -----------l--~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~ 277 (344)
T d2ca6a1 211 -----------L--AYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQT 277 (344)
T ss_dssp -----------G--GGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCE
T ss_pred -----------h--cchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCE
Confidence 0 0167899999999988633 34556788999999999999986543333 32 357999
Q ss_pred EeCCCCccccc----Cchhcc-cCCCCCEEecCCCCCcC
Q 037792 407 LDLSHNKLNGQ----IPPQLT-ELHSLSTFDVSYNNLSG 440 (558)
Q Consensus 407 L~Ls~N~i~~~----~~~~l~-~l~~L~~L~l~~N~l~~ 440 (558)
|++++|.|+.. +...+. +.++|++|++++|++..
T Consensus 278 L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~ 316 (344)
T d2ca6a1 278 LRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316 (344)
T ss_dssp EECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred EECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence 99999998743 233343 57889999999999974
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=2.4e-14 Score=122.46 Aligned_cols=107 Identities=20% Similarity=0.161 Sum_probs=43.1
Q ss_pred CCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeeccccccccccchhhcCCCCCCEEE
Q 037792 57 QGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYNNNFSGKIKDGLLRSTELMVLD 136 (558)
Q Consensus 57 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 136 (558)
.++++|+|++|+++ .++. .+..+++|++|++++|++... +.+..+++|++|++++|.++...+..+..+++|++|+
T Consensus 18 ~~lr~L~L~~n~I~-~i~~-~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~ 93 (162)
T d1a9na_ 18 VRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 93 (162)
T ss_dssp TSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CcCcEEECCCCCCC-ccCc-cccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccccce
Confidence 33444444444443 2321 223344444444444444321 2234444444444444444433333333444444444
Q ss_pred ccCCcCCCCCc-ccccCCCCCcEEEcccCcCc
Q 037792 137 ISNNRLSGHIP-SWMGNFSTLQILSMSKNLLE 167 (558)
Q Consensus 137 L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~ 167 (558)
+++|++..... ..+..+++|++|++++|+++
T Consensus 94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~ 125 (162)
T d1a9na_ 94 LTNNSLVELGDLDPLASLKSLTYLCILRNPVT 125 (162)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred eccccccccccccccccccccchhhcCCCccc
Confidence 44444442111 23344444444444444443
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.46 E-value=1.1e-13 Score=112.28 Aligned_cols=102 Identities=24% Similarity=0.321 Sum_probs=66.9
Q ss_pred cEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCeeeccc
Q 037792 36 VYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWALYLYN 115 (558)
Q Consensus 36 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 115 (558)
|+|++++|.++. ++ .+.++++|++|++++|+++ .+|+.+ ..+++|+.|++++|.+++. +.+..+++|++|++++
T Consensus 1 R~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~~~-~~l~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~l~~ 74 (124)
T d1dcea3 1 RVLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-ALPPAL-AALRCLEVLQASDNALENV--DGVANLPRLQELLLCN 74 (124)
T ss_dssp SEEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CCCGGG-GGCTTCCEEECCSSCCCCC--GGGTTCSSCCEEECCS
T ss_pred CEEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccC-cchhhh-hhhhccccccccccccccc--CccccccccCeEECCC
Confidence 567777777773 33 4677777777777777777 566543 5677777777777777642 3466677777777777
Q ss_pred ccccccc-chhhcCCCCCCEEEccCCcCC
Q 037792 116 NNFSGKI-KDGLLRSTELMVLDISNNRLS 143 (558)
Q Consensus 116 n~i~~~~-~~~~~~l~~L~~L~L~~n~l~ 143 (558)
|.++... ...+..+++|+.|++++|.++
T Consensus 75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence 7665432 234556666666666666654
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.46 E-value=8.6e-14 Score=135.39 Aligned_cols=246 Identities=17% Similarity=0.168 Sum_probs=165.8
Q ss_pred CCChhhhhcCCCccEEEccCCcCCCCC----chhhhCCCCCCEEEcccccCCc---cchH------HHHhcCCCCCEEEc
Q 037792 23 KLPQNMGIVLPKLVYMNISKNSFEGNI----PSSIGKMQGLRLLDVSSNNFAG---ELSQ------SLVINCFSLEWLDL 89 (558)
Q Consensus 23 ~~p~~~~~~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~L~~n~l~~---~~~~------~~~~~l~~L~~L~l 89 (558)
.+...+.. ...|+.|+|++|.+.... ...+...++|+.++++++.... ..+. ..+..+++|++|++
T Consensus 22 ~l~~~L~~-~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L 100 (344)
T d2ca6a1 22 SVFAVLLE-DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 100 (344)
T ss_dssp TTSHHHHH-CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHHHHHhh-CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccc
Confidence 44445544 788999999999886432 3456677999999998875531 1121 22346788999999
Q ss_pred cCCccCccC----chhhcCCCccCeeeccccccccccchh-------------hcCCCCCCEEEccCCcCCCCCc----c
Q 037792 90 SNNNFVGQI----FPNYMNLTRLWALYLYNNNFSGKIKDG-------------LLRSTELMVLDISNNRLSGHIP----S 148 (558)
Q Consensus 90 ~~n~i~~~~----~~~~~~l~~L~~L~l~~n~i~~~~~~~-------------~~~l~~L~~L~L~~n~l~~~~~----~ 148 (558)
++|.+.... ...+...++|++|++++|.+....... ....+.|+.+.+++|.+..... .
T Consensus 101 ~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~ 180 (344)
T d2ca6a1 101 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 180 (344)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred cccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccc
Confidence 999887643 334567889999999999875321111 1346789999999988764322 2
Q ss_pred cccCCCCCcEEEcccCcCccc-----chhhhcCCcccceeeccccccccccC----C-CcCCCCccEEEccCCcCcccch
Q 037792 149 WMGNFSTLQILSMSKNLLEGN-----IPVQFNNLASLQILNISENNLSGSMI----S-TLNLSSVEHLYLQNNALGGSIP 218 (558)
Q Consensus 149 ~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~i~~~~~----~-~~~~~~L~~L~l~~n~l~~~~~ 218 (558)
.+..++.|+.|++++|.+... +...+...++|+.|++++|.++.... . ...+++|++|++++|.+.+...
T Consensus 181 ~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~ 260 (344)
T d2ca6a1 181 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 260 (344)
T ss_dssp HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHH
T ss_pred hhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhh
Confidence 345678899999999988642 23345677889999999988764321 1 1267889999999998876543
Q ss_pred hhhhCCCCCcEEEcCCCCCCCcCEEEccCCcCCCC----chhhcc-CCCCCCEEEcccCcCcc
Q 037792 219 NTFFRGSALETLDLRINEHSNLRTLLLRGNYLQGP----IPHQLC-HLRKLGIMDISHNRLNG 276 (558)
Q Consensus 219 ~~~~~~~~L~~L~l~~n~~~~L~~L~l~~n~l~~~----~~~~~~-~l~~L~~L~l~~n~l~~ 276 (558)
..+... +.....+.|++|++++|.++.. +...+. ++++|+.|++++|.+..
T Consensus 261 ~~l~~~-------l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~ 316 (344)
T d2ca6a1 261 AAVVDA-------FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 316 (344)
T ss_dssp HHHHHH-------HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHHHH-------hhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence 333210 0011246788888888888743 233343 57899999999999863
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=1.2e-12 Score=110.83 Aligned_cols=90 Identities=22% Similarity=0.218 Sum_probs=77.8
Q ss_pred hcccCEEEccCCC-CCCCCCccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCchhcccCCCCCEE
Q 037792 353 LELMAGLDLSNNE-LTGDIPSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSTF 431 (558)
Q Consensus 353 l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~~~l~~l~~L~~L 431 (558)
+++|++|++++|+ ++...+..|.++++|+.|++++|+|+.+.+..|..+++|++|+|++|+|+...+..+..+ +|+.|
T Consensus 30 l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L 108 (156)
T d2ifga3 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQEL 108 (156)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEE
T ss_pred ccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccc-ccccc
Confidence 5778889997664 776667789999999999999999998888999999999999999999997666666655 69999
Q ss_pred ecCCCCCcCCCC
Q 037792 432 DVSYNNLSGPIP 443 (558)
Q Consensus 432 ~l~~N~l~~~~p 443 (558)
+|++|++.+.+.
T Consensus 109 ~L~~Np~~C~C~ 120 (156)
T d2ifga3 109 VLSGNPLHCSCA 120 (156)
T ss_dssp ECCSSCCCCCGG
T ss_pred ccCCCcccCCch
Confidence 999999987664
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.34 E-value=5.4e-14 Score=124.63 Aligned_cols=114 Identities=25% Similarity=0.275 Sum_probs=54.8
Q ss_pred CCChhhhhcCCCccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhh
Q 037792 23 KLPQNMGIVLPKLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNY 102 (558)
Q Consensus 23 ~~p~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~ 102 (558)
.++..+.. +++|++|++++|.|+.. + .+.++++|++|++++|.++ .++.. ...+++|++|++++|.++. .+.+
T Consensus 39 ~l~~sl~~-L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~~-~~~~~~L~~L~l~~N~i~~--l~~~ 111 (198)
T d1m9la_ 39 KMDATLST-LKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIENL-DAVADTLEELWISYNQIAS--LSGI 111 (198)
T ss_dssp CCHHHHHH-TTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSSH-HHHHHHCCEEECSEEECCC--HHHH
T ss_pred hhhhHHhc-ccccceeECcccCCCCc-c-cccCCccccChhhcccccc-ccccc-ccccccccccccccccccc--cccc
Confidence 33434433 55555555555555532 2 3555555555555555555 34321 1233445555555555543 1234
Q ss_pred cCCCccCeeeccccccccccc-hhhcCCCCCCEEEccCCcCC
Q 037792 103 MNLTRLWALYLYNNNFSGKIK-DGLLRSTELMVLDISNNRLS 143 (558)
Q Consensus 103 ~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~ 143 (558)
..+++|+.|++++|.++.... ..+..+++|+.|++++|.+.
T Consensus 112 ~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~ 153 (198)
T d1m9la_ 112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred cccccccccccccchhccccccccccCCCccceeecCCCccc
Confidence 455555555555555543211 23444555555555555443
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.30 E-value=8e-14 Score=123.50 Aligned_cols=127 Identities=20% Similarity=0.237 Sum_probs=85.1
Q ss_pred CccEEEccCC--cCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccCchhhcCCCccCee
Q 037792 34 KLVYMNISKN--SFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQIFPNYMNLTRLWAL 111 (558)
Q Consensus 34 ~L~~L~Ls~n--~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 111 (558)
..+.+++.+. .++ .++.++..+++|++|++++|.++ .++. +..+++|++|++++|.+.. ++..+..+++|+.|
T Consensus 24 ~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~-~i~~--l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L 98 (198)
T d1m9la_ 24 EAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KISS--LSGMENLRILSLGRNLIKK-IENLDAVADTLEEL 98 (198)
T ss_dssp TCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEES-CCCC--HHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEE
T ss_pred ccceeeeecccCchh-hhhhHHhcccccceeECcccCCC-Cccc--ccCCccccChhhccccccc-cccccccccccccc
Confidence 4555666543 233 45667788888888888888877 5543 3667788888888887764 34444555677888
Q ss_pred eccccccccccchhhcCCCCCCEEEccCCcCCCCCc-ccccCCCCCcEEEcccCcCc
Q 037792 112 YLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGHIP-SWMGNFSTLQILSMSKNLLE 167 (558)
Q Consensus 112 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~ 167 (558)
++++|.++.. +.+..+++|+.|++++|+++.... ..+..+++|+.|++++|++.
T Consensus 99 ~l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~ 153 (198)
T d1m9la_ 99 WISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp ECSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred cccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCccc
Confidence 8888877643 346667777778887777764321 35667777777777777665
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=2.9e-08 Score=83.92 Aligned_cols=106 Identities=18% Similarity=0.057 Sum_probs=58.9
Q ss_pred CccEEEccCCcCCCCCchhhhCCCCCCEEEcccccCCccchHHHHhcCCCCCEEEccCCccCccC--chhhcCCCccCee
Q 037792 34 KLVYMNISKNSFEGNIPSSIGKMQGLRLLDVSSNNFAGELSQSLVINCFSLEWLDLSNNNFVGQI--FPNYMNLTRLWAL 111 (558)
Q Consensus 34 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L 111 (558)
..+.|++++.... ..+..+..+..+...++... ....++..+++|++|++++|+++... +..+..+++|+.|
T Consensus 23 ~~~~Ldls~l~~~----~~l~~~~~~~~l~~~~~~~~--~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L 96 (162)
T d1koha1 23 SQQALDLKGLRSD----PDLVAQNIDVVLNRRSSMAA--TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKIL 96 (162)
T ss_dssp SSCCBCCCCCSSC----TTTTTTTCCCCTTSHHHHHH--HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCC
T ss_pred hhCeeecccCCCC----chhhhccchhhcchhhhHhh--hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCccccc
Confidence 4555666554322 12333444444444444332 23344456777777777777776532 2345667777777
Q ss_pred eccccccccccchhhcCCCCCCEEEccCCcCCCC
Q 037792 112 YLYNNNFSGKIKDGLLRSTELMVLDISNNRLSGH 145 (558)
Q Consensus 112 ~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 145 (558)
++++|.++....-...+...|+.|++++|.+...
T Consensus 97 ~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~ 130 (162)
T d1koha1 97 NLSGNELKSERELDKIKGLKLEELWLDGNSLSDT 130 (162)
T ss_dssp CCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred ccccCccccchhhhhhhccccceeecCCCCcCcC
Confidence 7777777654333333445667777777766543
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=2.3e-07 Score=78.20 Aligned_cols=80 Identities=26% Similarity=0.178 Sum_probs=48.5
Q ss_pred hcccCEEEccCCCCCCCC--CccccCccCCCeeeccCCcCCccchhhhhccccCCeEeCCCCcccccCc-------hhcc
Q 037792 353 LELMAGLDLSNNELTGDI--PSEIGDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-------PQLT 423 (558)
Q Consensus 353 l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~i~~~~~-------~~l~ 423 (558)
+++|++|++++|+++... +..+..+++|+.|++++|.|+...+-.+.....|+.|++++|.+..... ..+.
T Consensus 64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~ 143 (162)
T d1koha1 64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE 143 (162)
T ss_dssp CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence 566777777777776432 2345567777777777777775433333344467777777777764332 2245
Q ss_pred cCCCCCEEe
Q 037792 424 ELHSLSTFD 432 (558)
Q Consensus 424 ~l~~L~~L~ 432 (558)
.+|+|+.||
T Consensus 144 ~~P~L~~LD 152 (162)
T d1koha1 144 RFPKLLRLD 152 (162)
T ss_dssp TSTTCCEET
T ss_pred HCCCCCEEC
Confidence 567777665
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.85 E-value=1.5e-05 Score=67.03 Aligned_cols=64 Identities=13% Similarity=0.142 Sum_probs=27.3
Q ss_pred CCCccEEEccCC-cCCCC----CchhhhCCCCCCEEEcccccCCccch---HHHHhcCCCCCEEEccCCccC
Q 037792 32 LPKLVYMNISKN-SFEGN----IPSSIGKMQGLRLLDVSSNNFAGELS---QSLVINCFSLEWLDLSNNNFV 95 (558)
Q Consensus 32 l~~L~~L~Ls~n-~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~l~~L~~L~l~~n~i~ 95 (558)
.++|++|+|+++ .++.. +..++...++|++|++++|.+..... ...+...+.|++|++++|.+.
T Consensus 14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~ 85 (167)
T d1pgva_ 14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 85 (167)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence 345555555542 23311 12234444555555555555542111 111223444555555555444
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.78 E-value=1.3e-05 Score=67.46 Aligned_cols=112 Identities=14% Similarity=0.112 Sum_probs=73.4
Q ss_pred CcCCCccEEEccCC-cCCCCCChhhh---hcCCCccEEEccCCcCCC----CCchhhhCCCCCCEEEcccccCCccchHH
Q 037792 5 SAQHGLHSLDISRN-SFSGKLPQNMG---IVLPKLVYMNISKNSFEG----NIPSSIGKMQGLRLLDVSSNNFAGELSQS 76 (558)
Q Consensus 5 ~~~~~L~~L~l~~n-~l~~~~p~~~~---~~l~~L~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 76 (558)
.+.++|++|+|+++ .+....-..++ ...++|++|++++|.+.. .+...+...+.|++|++++|.+++.....
T Consensus 12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~ 91 (167)
T d1pgva_ 12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 91 (167)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence 46789999999974 45532212222 235789999999999873 23355677899999999999998543333
Q ss_pred H---HhcCCCCCEEEccCCccCcc-------CchhhcCCCccCeeecccc
Q 037792 77 L---VINCFSLEWLDLSNNNFVGQ-------IFPNYMNLTRLWALYLYNN 116 (558)
Q Consensus 77 ~---~~~l~~L~~L~l~~n~i~~~-------~~~~~~~l~~L~~L~l~~n 116 (558)
+ +...+.|++|++++|.+... +...+...++|+.|+++.+
T Consensus 92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~ 141 (167)
T d1pgva_ 92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 141 (167)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence 3 23446688888887765432 2233444566666666554
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.38 E-value=0.00012 Score=61.29 Aligned_cols=65 Identities=9% Similarity=0.085 Sum_probs=34.3
Q ss_pred cCCCccEEEccC-CcCCCC----CchhhhCCCCCCEEEcccccCCccchH---HHHhcCCCCCEEEccCCccC
Q 037792 31 VLPKLVYMNISK-NSFEGN----IPSSIGKMQGLRLLDVSSNNFAGELSQ---SLVINCFSLEWLDLSNNNFV 95 (558)
Q Consensus 31 ~l~~L~~L~Ls~-n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~l~~n~i~ 95 (558)
..+.|++|++++ +.++.. +..++...++|++|++++|.++..... ..+...+.++.+++++|.+.
T Consensus 15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~ 87 (166)
T d1io0a_ 15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 87 (166)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence 356666666665 344321 223344566677777777666532221 12234556666666666554
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.24 E-value=0.00013 Score=61.05 Aligned_cols=113 Identities=14% Similarity=0.067 Sum_probs=73.1
Q ss_pred CcCCCccEEEccC-CcCCCCCChhhh---hcCCCccEEEccCCcCCCC----CchhhhCCCCCCEEEcccccCCccchHH
Q 037792 5 SAQHGLHSLDISR-NSFSGKLPQNMG---IVLPKLVYMNISKNSFEGN----IPSSIGKMQGLRLLDVSSNNFAGELSQS 76 (558)
Q Consensus 5 ~~~~~L~~L~l~~-n~l~~~~p~~~~---~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 76 (558)
.+.++|++|++++ +.++...-..+. ...++|++|++++|.++.. +...+...+.++.+++++|.+.......
T Consensus 14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~ 93 (166)
T d1io0a_ 14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 93 (166)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence 4678999999997 456532222232 2478999999999998743 2345677899999999999987443332
Q ss_pred HH---hcCCCCCEEEcc--CCccCc----cCchhhcCCCccCeeeccccc
Q 037792 77 LV---INCFSLEWLDLS--NNNFVG----QIFPNYMNLTRLWALYLYNNN 117 (558)
Q Consensus 77 ~~---~~l~~L~~L~l~--~n~i~~----~~~~~~~~l~~L~~L~l~~n~ 117 (558)
+. ...++|+.++++ +|.+.. .+...+...++|++|+++.+.
T Consensus 94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence 22 445677776554 455543 223344556666666665543
|