Citrus Sinensis ID: 037814

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MVDAIISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKRQVKEETVRLWLDQLRDACYDMEDVLGEWNTARLKLQIDGVDDHLNDALVPKKKVCSLFPAASCFARKPLVLRRDIALKIKEINETLDDIAKQRDMFGFAVNVIKSNERADQRVPSISSIDESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNNDD
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccccEEEEEEccccccHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEccccccccEEcccccccccccccEEcccHHHHHHHHHHHccccccccccEEEEEEccccccHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MVDAIISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKRQVKEETVRLWLDQLRDACYDMEDVLGEWNTARLKLQIDGvddhlndalvpkkkvcslfpaascfarkplvLRRDIALKIKEINETLDDIAKQRDMFGFAVNVIKsneradqrvpsissideseifgreKEKNELVNRLLCesseerkgpriislvgmggigktTLAQFAYNNDD
Flexible Loop (DISEMBL)
MVDAIISPLLEQLISVAVEEAKEQVrlvtgvgkevkklTSSLRAVQavlhdaekrqvkeetvRLWLDQLRDACYDMEDVLGEWNTARLKLQIDGVDDHLNDALVPKKkvcslfpaascfarkplvlrRDIALKIKEINETLDDIAKQRDMFGFAVNVIksneradqrvpsissideseifgrekeknelvnrllcesseerkgpriislvgmggigkttlaqfaynndd
Low Complexity Region (SEG)
MVDAIISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKRQVKEETVRLWLDQLRDACYDMEDVLGEWNTARLKLQIDGVDDHLNDALVPKKKVCSLFPAASCFARKPLVLRRDIALKIKEINETLDDIAKQRDMFGFAVNVIKSNERADQRVPSISSIDESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNNDD
Disordered region (IsUnstruct)
****IISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKRQVKEETVRLWLDQLRDACYDMEDVLGEWNTARLKLQIDGVDDHLNDALVPKKKVCSLFPAASCFARKPLVLRRDIALKIKEINETLDDIAKQRDMFGFAVNVIK*********************************************RIISLVGMGGIGKTTLAQFAY****
Disordered Region (DISOPRED)
MVDAIISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKRQVKEETVRLWLDQLRDACYDMEDVLGEWNTARLK*********************SLFPAASCFARKPLVLRRDIALKIKEINETLDDIAKQRDMFG*********************IDESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN**
Disordered Region (DISEMBL)
MVDAIISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKRQVKEETVRLWLDQLRDACYDMEDVLGEWNTARLKLQIDGVDDHLNDALVPKKKVCSLFPAASCFARKPLVLRRDIALKIKEINETLDDIAKQRDMFGFAVNVIKSNERADQRVPSISSIDESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNNDD
Disordered Region (DISPRO)
MVDAIISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKRQVKEETVRLWLDQLRDACYDMEDVLGEWNTARLKLQIDGVDDHLNDALVPKKKVCSLFPAASCFARKPLVLRRDIALKIKEINETLDDIAKQRDMFGFAVNVIKSNERADQRVPSISSIDESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNNDD
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVDAIISPLLEQLISVAVEEAKEQVRLVTGVGKExxxxxxxxxxxxxxxxxxxxxQVKEETVRLWLDQLRDACYDMEDVLGEWNTARLKLQIDGVDDHLNDALVPKKKVCSLFPAASCFARKPLVLRRDIALKIKEINETLDDIAKQRDMFGFAVNVIKSNERADQRVPSISSIDESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNNDD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	229	2.2.26 [Sep-21-2011]
Q7XA39	988	Putative disease resistan	N/A	no	0.877	0.203	0.298	4e-22
Q7XA40	992	Putative disease resistan	N/A	no	0.855	0.197	0.318	8e-21
Q7XBQ9	970	Disease resistance protei	N/A	no	0.851	0.201	0.273	2e-18
Q7XA42	979	Putative disease resistan	N/A	no	0.864	0.202	0.273	2e-18
Q9LRR4	1054	Putative disease resistan	yes	no	0.772	0.167	0.309	2e-18
Q38834	852	Disease resistance RPP13-	no	no	0.882	0.237	0.3	7e-14
Q8W4J9	908	Disease resistance protei	no	no	0.877	0.221	0.245	3e-11
Q9FJK8	908	Probable disease resistan	no	no	0.868	0.219	0.264	3e-11
Q9SX38	857	Putative disease resistan	no	no	0.886	0.236	0.284	4e-11
A7XGN8	910	Disease susceptibility pr	no	no	0.816	0.205	0.265	5e-11

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score =  105 bits (261), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 120/228 (52%), Gaps = 27/228 (11%)

Query: 1   MVDAIISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKRQVKEE 60
           M +A +  LLE L S       +++ L+ G  KE +KL+S    +QAVL DA+++Q+K++
Sbjct: 1   MAEAFLQVLLENLTSFI----GDKLVLIFGFEKECEKLSSVFSTIQAVLQDAQEKQLKDK 56

Query: 61  TVRLWLDQLRDACYDMEDVLGEWNTARLKLQIDGVDDHLNDALVPKKKVCSLFPAASCFA 120
            +  WL +L  A Y+++D+LGE     ++ +              + ++    P    F 
Sbjct: 57  AIENWLQKLNSAAYEVDDILGECKNEAIRFE--------------QSRLGFYHPGIINF- 101

Query: 121 RKPLVLRRDIALKIKEINETLDDIAKQRDMFGFAVNVIKSNERADQRVPSISSIDESEIF 180
                 R  I  ++KEI E LD I+++R  F F   + +    A  R      + E +++
Sbjct: 102 ------RHKIGRRMKEIMEKLDAISEERRKFHFLEKITERQAAAATRETGF-VLTEPKVY 154

Query: 181 GREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNND 228
           GR+KE++E+V  L+   +   + P +  ++GMGG+GKTTLAQ  +N++
Sbjct: 155 GRDKEEDEIVKILINNVNVAEELP-VFPIIGMGGLGKTTLAQMIFNDE 201

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.
Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2

 Score =  100 bits (249), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 73/229 (31%), Positives = 119/229 (51%), Gaps = 33/229 (14%)

Query: 1   MVDAIISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKRQVKEE 60
           M +A +  LL+ L        + ++ LV G  KE KKL+S    +QAVL DA+++Q+K +
Sbjct: 1   MAEAFLQVLLDNLTFFI----QGELGLVFGFEKEFKKLSSMFSMIQAVLEDAQEKQLKYK 56

Query: 61  TVRLWLDQLRDACYDMEDVLGEWNT--ARLKLQIDGVDDHLNDALVPKKKVCSLFPAASC 118
            ++ WL +L  A Y+++D+L +  T  AR K  + G                   P    
Sbjct: 57  AIKNWLQKLNVAAYEVDDILDDCKTEAARFKQAVLG----------------RYHPRTIT 100

Query: 119 FARKPLVLRRDIALKIKEINETLDDIAKQRDMFGFAVNVIKSNERADQRVPSISSIDESE 178
           F  K       +  ++KE+ E LD IA++R  F     +I   ER   R  +   + E +
Sbjct: 101 FCYK-------VGKRMKEMMEKLDAIAEERRNFHLDERII---ERQAARRQTGFVLTEPK 150

Query: 179 IFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227
           ++GREKE++E+V  L+   S   + P ++ ++GMGG+GKTTLAQ  +N+
Sbjct: 151 VYGREKEEDEIVKILINNVSYSEEVP-VLPILGMGGLGKTTLAQMVFND 198

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score = 92.8 bits (229), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 118/230 (51%), Gaps = 35/230 (15%)

Query: 1   MVDAIISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKRQVKEE 60
           M +A I  LL+ L S      K ++ L+ G   E ++L+S    +QAVL DA+++Q+  +
Sbjct: 1   MAEAFIQVLLDNLTSFL----KGELVLLFGFQDEFQRLSSMFSTIQAVLEDAQEKQLNNK 56

Query: 61  TVRLWLDQLRDACYDMEDVLGEWNTARLKLQIDGVDDHLNDALVPKKKVCSLFPAASCFA 120
            +  WL +L  A Y+++D+L E+ T   +                         + S + 
Sbjct: 57  PLENWLQKLNAATYEVDDILDEYKTKATRF------------------------SQSEYG 92

Query: 121 R---KPLVLRRDIALKIKEINETLDDIAKQRDMFGFAVNVIKSNERADQRVPSISSIDES 177
           R   K +  R  +  ++ ++ + L  IA++R  F     ++   ER   R  + S + E 
Sbjct: 93  RYHPKVIPFRHKVGKRMDQVMKKLKAIAEERKNFHLHEKIV---ERQAVRRETGSVLTEP 149

Query: 178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227
           +++GR+KEK+E+V ++L  +  + +   ++ ++GMGG+GKTTLAQ  +N+
Sbjct: 150 QVYGRDKEKDEIV-KILINNVSDAQHLSVLPILGMGGLGKTTLAQMVFND 198

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2

 Score = 92.8 bits (229), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 118/227 (51%), Gaps = 29/227 (12%)

Query: 1   MVDAIISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKRQVKEE 60
           M +A I  +L+ L S      K ++ L+ G   E ++L+S    +QAVL DA+++Q+ ++
Sbjct: 1   MAEAFIQVVLDNLTSFL----KGELVLLFGFQDEFQRLSSMFSTIQAVLEDAQEKQLNDK 56

Query: 61  TVRLWLDQLRDACYDMEDVLGEWNTARLKLQIDGVDDHLNDALVPKKKVCSLFPAASCFA 120
            +  WL +L  A Y+++D+L E+ T   +                      L      + 
Sbjct: 57  PLENWLQKLNAATYEVDDILDEYKTKATRF---------------------LQSEYGRYH 95

Query: 121 RKPLVLRRDIALKIKEINETLDDIAKQRDMFGFAVNVIKSNERADQRVPSISSIDESEIF 180
            K +  R  +  ++ ++ + L+ IA++R  F     +I   ER      + S + E +++
Sbjct: 96  PKVIPFRHKVGKRMDQVMKKLNAIAEERKKFHLQEKII---ERQAATRETGSVLTEPQVY 152

Query: 181 GREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227
           GR+KEK+E+V  L+  +S+ +K   ++ ++GMGG+GKTTL+Q  +N+
Sbjct: 153 GRDKEKDEIVKILINTASDAQK-LSVLPILGMGGLGKTTLSQMVFND 198

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1

 Score = 92.8 bits (229), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 113/197 (57%), Gaps = 20/197 (10%)

Query: 35  VKKLTSSLRAVQAVLHDAEKRQVKEETVRLWLDQLRDACYDMEDVLGEWNTARLKLQIDG 94
           +++L+++L  + AVL DAE++Q+    V  W+++LRD  Y  ED L +  T  L+L I G
Sbjct: 39  LERLSTALLTITAVLIDAEEKQITNPVVEKWVNELRDVVYHAEDALDDIATEALRLNI-G 97

Query: 95  VDDHLNDALVPKKKVCSL--FPAASCFARKPLVLRRDIALKIKEINETLDDIAKQRDMFG 152
            +   ++ L   +   SL  F   +            +  +++++   L+ +A QR++ G
Sbjct: 98  AESSSSNRLRQLRGRMSLGDFLDGNS---------EHLETRLEKVTIRLERLASQRNILG 148

Query: 153 FA--VNVIKSNERADQRVPSISSIDESEIFGREKEKNELVNRLLCESSEERKGPRIISLV 210
                 +I       QR+P+ S +DESE+FGR+ +K+E++  L+ E+ ++  G  ++++V
Sbjct: 149 LKELTAMI-----PKQRLPTTSLVDESEVFGRDDDKDEIMRFLIPENGKD-NGITVVAIV 202

Query: 211 GMGGIGKTTLAQFAYNN 227
           G+GG+GKTTL+Q  YN+
Sbjct: 203 GIGGVGKTTLSQLLYND 219

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38834|R13L4_ARATH Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2

 Score = 77.4 bits (189), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 119/230 (51%), Gaps = 28/230 (12%)

Query: 1   MVDAIISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKRQVKEE 60
           MVDA+++  LE+ +++     +E+ R V+   K+++ L S L+ +Q+ L DAE+++   E
Sbjct: 1   MVDAVVTVFLEKTLNIL----EEKGRTVSDYRKQLEDLQSELKYMQSFLKDAERQKRTNE 56

Query: 61  TVRLWLDQLRDACYDMEDVLGEWNTARLKLQIDGVDDHLNDALVPKKKVCSLFPAASCFA 120
           T+R  +  LR+  Y+ ED+L +   A      DG D   N+       +  L P     A
Sbjct: 57  TLRTLVADLRELVYEAEDILVDCQLA------DGDDG--NEQRSSNAWLSRLHP-----A 103

Query: 121 RKPLVLRRDIALKIKEINETLDDIAKQRD-MFGFAVNVIKSNERADQRVPSISS--IDES 177
           R PL  ++  + +++EINE +  I  Q +  F F   +  SN   D      SS   D +
Sbjct: 104 RVPLQYKK--SKRLQEINERITKIKSQVEPYFEF---ITPSNVGRDNGTDRWSSPVYDHT 158

Query: 178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227
           ++ G E +K ++   L   +  +     I++ VGMGG+GKTT+AQ  +N+
Sbjct: 159 QVVGLEGDKRKIKEWLFRSNDSQL---LIMAFVGMGGLGKTTIAQEVFND 205

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W4J9|RPP8_ARATH Disease resistance protein RPP8 OS=Arabidopsis thaliana GN=RPP8 PE=1 SV=2

 Score = 68.9 bits (167), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 114/236 (48%), Gaps = 35/236 (14%)

Query: 1   MVDAIISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKRQVKEE 60
           M +A +S  LE+L  +   E++     + G+  ++  L   LR++Q++L DA+ ++   +
Sbjct: 1   MAEAFVSFGLEKLWDLLSRESER----LQGIDGQLDGLKRQLRSLQSLLKDADAKKHGSD 56

Query: 61  TVRLWLDQLRDACYDMEDVLGEWNTARLKLQIDGVDDHLNDALVPKKKVCSLFPAASCFA 120
            VR +L+ ++D  +D ED++  +   +L  +  GV  H+                 +CF 
Sbjct: 57  RVRNFLEDVKDLVFDAEDIIESYVLNKLSGKGKGVKKHVR--------------RLACF- 101

Query: 121 RKPLVLRRDIALKIKEINETLDDIAKQRDMFGFAVNV-------IKSNERADQRV-PSIS 172
              L  R  +A  I+ I + + ++  +   FG    +       ++  +R  + +  +  
Sbjct: 102 ---LTDRHKVASDIEGITKRISEVIGEMQSFGIQQIIDGGRSLSLQERQRVQREIRQTYP 158

Query: 173 SIDESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNND 228
              ES++ G E+   ELV  L+     E    +++S+ GMGGIGKTTLA+  +++D
Sbjct: 159 DSSESDLVGVEQSVKELVGHLV-----ENDVHQVVSIAGMGGIGKTTLARQVFHHD 209

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. The interaction with TIP (TCV-interacting protein) may be essential for the recognition of the avirulence proteins, and the triggering of the defense response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJK8|RP8L4_ARATH Probable disease resistance RPP8-like protein 4 OS=Arabidopsis thaliana GN=RPP8L4 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 114/238 (47%), Gaps = 39/238 (16%)

Query: 1   MVDAIISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKRQVKEE 60
           M +  +S  LE+L  +   E++     + G+ +++  L   LR++Q++L DA+ ++   +
Sbjct: 1   MAEGFVSFGLEKLWDLLSRESER----LQGIDEQLDGLKRQLRSLQSLLKDADAKKHGSD 56

Query: 61  TVRLWLDQLRDACYDMEDVLGEWNTARLKLQIDGVDDHLNDALVPKKKVCSLFPAASCFA 120
            VR +L+ ++D  +D ED++  +   +L+ +  GV  H+                    A
Sbjct: 57  RVRNFLEDVKDLVFDAEDIIESYVLNKLRGEGKGVKKHVRR-----------------LA 99

Query: 121 RKPLVLRRDIALKIKEINETLDDIAKQRDMFGF-----AVNVIKSNERADQRV-----PS 170
           R  L  R  +A  I+ I + + D+  +   FG       V  +   ER  QRV      +
Sbjct: 100 RF-LTDRHKVASDIEGITKRISDVIGEMQSFGIQQIIDGVRSLSLQER--QRVQREIRQT 156

Query: 171 ISSIDESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNND 228
                ES++ G E+   ELV  L+     E    +++S+ GMGGIGKTTLA+  +++D
Sbjct: 157 YPDSSESDLVGVEQSVEELVGHLV-----ENDIYQVVSIAGMGGIGKTTLARQVFHHD 209

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SX38|DRL4_ARATH Putative disease resistance protein At1g50180 OS=Arabidopsis thaliana GN=At1g50180 PE=3 SV=2

 Score = 68.2 bits (165), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 114/232 (49%), Gaps = 29/232 (12%)

Query: 1   MVDAIISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKRQVKEE 60
           M +AI+S  +++L     +   E+   + G+G +VK+L   L+ +   L DA+++Q + E
Sbjct: 1   MAEAIVSVTVQKL----GQLLLEEPLFLFGIGDQVKQLQDELKRLNCFLKDADEKQHESE 56

Query: 61  TVRLWLDQLRDACYDMEDVLGEWNTARLKLQIDGVDDHLNDALVPKKKVCSLFPAASCFA 120
            VR W+  +R+A YD ED+L  +       +  G+        V ++  C L  A S  +
Sbjct: 57  RVRNWVAGIREASYDAEDILEAFFLKAESRKQKGMKR------VLRRLACILNEAVSLHS 110

Query: 121 RKPLVLRRDIALKIKEINETLDDIAKQRDMFGFAVNVIK-----SNERADQRVPSISSID 175
                    +  +I+EI   L  IA     FG   ++ +     S+   +QR  S   + 
Sbjct: 111 ---------VGSEIREITSRLSKIAASMLDFGIKESMGREGLSLSDSLREQR-QSFPYVV 160

Query: 176 ESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227
           E  + G E+   +LVN L+  S  E+   R+ S+ GMGG+GKTTLA+  +++
Sbjct: 161 EHNLVGLEQSLEKLVNDLV--SGGEKL--RVTSICGMGGLGKTTLAKQIFHH 208

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|A7XGN8|LOV1B_ARATH Disease susceptibility protein LOV1 OS=Arabidopsis thaliana GN=LOV1 PE=1 SV=1

 Score = 68.2 bits (165), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 104/211 (49%), Gaps = 24/211 (11%)

Query: 22  KEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKRQVKEETVRLWLDQLRDACYDMEDVLG 81
           +E  RL  G+G++V  L   L  +Q++L DA+ ++ + E VR +L+ +RD  YD ED++ 
Sbjct: 19  RESARL-NGIGEQVDGLKRQLGRLQSLLKDADAKKHESERVRNFLEDVRDIVYDAEDIIE 77

Query: 82  EWNTARLKLQIDGVDDH---LNDALVPKKKVCSLFPAASCFARKPLVLRRDIALKIKEIN 138
            +     + +  G+  H   L   LV ++K  S                + I  KI E+ 
Sbjct: 78  SFLLNEFRTKEKGIKKHARRLACFLVDRRKFASDI--------------KGITKKISEVI 123

Query: 139 ETLDDIAKQRDMFGFAVNVIKSNERADQRV-PSISSIDESEIFGREKEKNELVNRLLCES 197
             +  +  Q  + G +   ++  +R  + +  + ++  ES++ G E+    L   L+   
Sbjct: 124 GGMKSLGIQEIIDGASSMSLQERQREQKEIRQTFANSSESDLVGVEQSVEALAGHLV--- 180

Query: 198 SEERKGPRIISLVGMGGIGKTTLAQFAYNND 228
             E    +++S+ GMGGIGKTTLA+  +++D
Sbjct: 181 --ENDNIQVVSISGMGGIGKTTLARQVFHHD 209

Confers susceptibility to the fungus Cochliobolus victoriae by conditioning victorin-dependent (victorin is a toxin synthesized by C.victoriae) induction of defense-associated proteins.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
224122712	945	cc-nbs-lrr resistance protein [Populus t	0.969	0.234	0.462	3e-51
224114836	477	cc-nbs resistance protein [Populus trich	0.969	0.465	0.480	6e-51
224114840	566	cc-nbs resistance protein [Populus trich	0.965	0.390	0.469	1e-48
224115620	963	cc-nbs-lrr resistance protein [Populus t	0.934	0.222	0.508	3e-48
224110232	486	cc-nbs resistance protein [Populus trich	0.960	0.452	0.466	3e-48
359482792	922	PREDICTED: putative disease resistance p	0.960	0.238	0.473	9e-48
224114848	571	cc-nbs resistance protein [Populus trich	0.960	0.385	0.458	1e-47
359482784	919	PREDICTED: putative disease resistance p	0.960	0.239	0.473	1e-47
225470202	910	PREDICTED: putative disease resistance p	0.960	0.241	0.454	3e-46
359482798	932	PREDICTED: putative disease resistance p	0.960	0.236	0.454	4e-46

>gi|224122712|ref|XP_002318907.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222859580|gb|EEE97127.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 106/229 (46%), Positives = 165/229 (72%), Gaps = 7/229 (3%)

Query: 1   MVDAIISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKRQVKEE 60
           M +A++SP+LEQL ++  ++ +E+V LV GV K+V KL S+L  +Q+VL DA+++QVK++
Sbjct: 1   MAEALLSPILEQLTTIVAQQVQEEVNLVVGVKKQVDKLKSNLLDIQSVLEDADRKQVKDK 60

Query: 61  TVRLWLDQLRDACYDMEDVLGEWNTARLKLQIDGVDDHLNDALVPKKKVCSLFPAASCFA 120
            VR W+D+L+DACYDM+DVL EW+TA L+ +++  +++ +     ++K+   F  + CF 
Sbjct: 61  AVRDWVDKLKDACYDMDDVLDEWSTAILRWKMEEAEENTHS----RQKIRCSFLGSPCFC 116

Query: 121 RKPLVLRRDIALKIKEINETLDDIAKQRDMFGFAVNVIKSNERADQRVPSISSIDESEIF 180
              +V RRDIALKIKE++E +DDIAK+R  +GF  ++ K  +   QR+ + S +DES + 
Sbjct: 117 FNQVVRRRDIALKIKEVSEKVDDIAKERAKYGF--DLYKGTDEL-QRLTTTSFVDESSVI 173

Query: 181 GREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNNDD 229
           GR+ EK  +V++LL ESS E +   +ISLVG+GGIGKTTLAQ A+N+ +
Sbjct: 174 GRDGEKRNVVSKLLAESSHEARDVDVISLVGLGGIGKTTLAQLAFNDSE 222

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114836|ref|XP_002332294.1| cc-nbs resistance protein [Populus trichocarpa] gi|222832456|gb|EEE70933.1| cc-nbs resistance protein [Populus trichocarpa]

 Score =  206 bits (524), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 110/229 (48%), Positives = 163/229 (71%), Gaps = 7/229 (3%)

Query: 1   MVDAIISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKRQVKEE 60
           M +A++SP+LEQL +V  ++ +E+V LV GV K+V KL S+L A+Q+VL DA+++QVK++
Sbjct: 1   MAEALLSPILEQLSTVVAQQVQEEVNLVGGVKKQVDKLKSNLLAIQSVLEDADRKQVKDK 60

Query: 61  TVRLWLDQLRDACYDMEDVLGEWNTARLKLQIDGVDDHLNDALVPKKKVCSLFPAASCFA 120
            VR W D+L+D CYDM+DVL EW+TA L+ ++   +++ +     +K  CS F  + CF 
Sbjct: 61  AVRDWADKLKDVCYDMDDVLDEWSTAILRWKMGEAEENTHSQ---QKMRCS-FLGSPCFC 116

Query: 121 RKPLVLRRDIALKIKEINETLDDIAKQRDMFGFAVNVIKSNERADQRVPSISSIDESEIF 180
              +  RRDIALKIKE+ E +D+IAK+R MFGF   + ++ +   QR+ S S +DES + 
Sbjct: 117 FNQVARRRDIALKIKEVCEKVDEIAKERAMFGF--ELYRATDEL-QRITSTSLVDESIVR 173

Query: 181 GREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNNDD 229
           GR+ E+  LV++LL ES +E +   +ISLVGMGGIGKTTLAQ A+N+D+
Sbjct: 174 GRDDERESLVSKLLGESRQEARDVEVISLVGMGGIGKTTLAQLAFNDDE 222

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114840|ref|XP_002332295.1| cc-nbs resistance protein [Populus trichocarpa] gi|222832457|gb|EEE70934.1| cc-nbs resistance protein [Populus trichocarpa]

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 107/228 (46%), Positives = 159/228 (69%), Gaps = 7/228 (3%)

Query: 1   MVDAIISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKRQVKEE 60
           M +A++SP+LEQL ++  ++ +E+V LV GV K V KL S+L A+Q+VL DA+++QVK++
Sbjct: 1   MAEALVSPILEQLTTIVAQQVQEEVNLVVGVKKHVDKLKSNLLAIQSVLEDADRKQVKDK 60

Query: 61  TVRLWLDQLRDACYDMEDVLGEWNTARLKLQIDGVDDHLNDALVPKKKVCSLFPAASCFA 120
            VR WLD+L+D CYD++DVL EW+T  L  ++ G  +   D+L  +K  CS F  + CF 
Sbjct: 61  AVRDWLDKLKDVCYDIDDVLDEWSTEILTWKM-GDAEQYTDSL--QKMRCS-FQRSPCFC 116

Query: 121 RKPLVLRRDIALKIKEINETLDDIAKQRDMFGFAVNVIKSNERADQRVPSISSIDE-SEI 179
              +V RRDIAL IKE+ + +D+IAK+R MFGF   + ++ +   +R  S S  DE S +
Sbjct: 117 FNQVVRRRDIALNIKEVCQKVDEIAKERAMFGF--ELYRATDEQQRRPTSTSFFDEYSSV 174

Query: 180 FGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227
            GR+ E+  +V++LL ESS+E +   +ISLVG+GGIGKTTLAQ A+N+
Sbjct: 175 IGRDDEREAVVSKLLGESSQEARDVDVISLVGLGGIGKTTLAQLAFND 222

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115620|ref|XP_002332101.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222874921|gb|EEF12052.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 120/236 (50%), Positives = 160/236 (67%), Gaps = 22/236 (9%)

Query: 1   MVDAIISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKRQVKEE 60
           M DA++S +LEQL S+ ++E + +VRLV GV  EVKKLTS+ +A+QA+  DAE+RQ+K++
Sbjct: 1   MADALVSVVLEQLSSIIIQEVQREVRLVVGVENEVKKLTSNFQAIQAMFADAEERQLKDQ 60

Query: 61  TVRLWLDQLRDACYDMEDVLGEWNTARLKLQIDGVDDHLNDALVPKK---KVCSLFPAAS 117
            V+ WLDQL+D  YDM+DVL EW T   K Q   V++H      P+K   KVCS F   S
Sbjct: 61  LVKHWLDQLKDVSYDMDDVLDEWGTEIAKSQ-SKVNEH------PRKNTRKVCS-FMIFS 112

Query: 118 CFARKPLVLRRDIALKIKEINETLDDIAKQRDMFGFAVN--VIKSNERADQRVPSISSID 175
           CF  + + LRRDIALKIKE+NE +D IA +++ F F  +  VIK +   D R  ++S ID
Sbjct: 113 CFRFREVGLRRDIALKIKELNERIDGIAIEKNRFHFKSSEVVIKQH---DHR-KTVSFID 168

Query: 176 ESEIFGREKEKNELVNRLLCESSEERKGP--RIISLVGMGGIGKTTLAQFAYNNDD 229
            +E+ GRE +K  + N LL ESS+   GP  R ISLVGMGGIGKTTLAQ  YN+ +
Sbjct: 169 AAEVKGRETDKGRVRNMLLTESSQ---GPALRTISLVGMGGIGKTTLAQLVYNDHE 221

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110232|ref|XP_002333124.1| cc-nbs resistance protein [Populus trichocarpa] gi|222834935|gb|EEE73384.1| cc-nbs resistance protein [Populus trichocarpa]

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 106/227 (46%), Positives = 159/227 (70%), Gaps = 7/227 (3%)

Query: 1   MVDAIISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKRQVKEE 60
           M +A++SP+LEQL +V  ++ +E+V LV GV K+V KL S+L A+Q+VL DA+++QVK++
Sbjct: 1   MAEALLSPILEQLTTVVAQQVQEEVSLVGGVKKQVDKLKSNLIAIQSVLEDADRKQVKDK 60

Query: 61  TVRLWLDQLRDACYDMEDVLGEWNTARLKLQIDGVDDHLNDALVPKKKVCSLFPAASCFA 120
            VR W+D+L+D CYDM+DVL EW++A L  +++  +++       +K  CS F  + CF 
Sbjct: 61  AVRDWVDKLKDVCYDMDDVLDEWSSAILTWKMEEAEENTRSL---QKMRCS-FLGSPCFC 116

Query: 121 RKPLVLRRDIALKIKEINETLDDIAKQRDMFGFAVNVIKSNERADQRVPSISSIDESEIF 180
              +  RRDIALKIKE+ E +DDIAK R M+GF   + ++ +   QR+ S S +DES + 
Sbjct: 117 LNQVGRRRDIALKIKEVCEKVDDIAKARAMYGF--ELYRATDEL-QRITSTSLVDESIVT 173

Query: 181 GREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227
           GR+ E+  +V++LL ES +E     +IS+VGMGGIGKTTLAQ A+N+
Sbjct: 174 GRDDEREAVVSKLLGESIQEAGDVEVISIVGMGGIGKTTLAQLAFND 220

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482792|ref|XP_002268589.2| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera]

 Score =  196 bits (497), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 109/230 (47%), Positives = 154/230 (66%), Gaps = 10/230 (4%)

Query: 1   MVDAIISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKRQVKEE 60
           M DA++S +LE+L SV  ++ ++++ LV GV  E++ LT +LR+V+ VL DAE+RQVKE+
Sbjct: 1   MADALLSIVLERLASVVEQQIRDELTLVLGVEAEIQSLTDTLRSVRDVLEDAERRQVKEK 60

Query: 61  TVRLWLDQLRDACYDMEDVLGEWNTARLKLQIDGVDDHLNDALVPKKKVCSLFPAASCFA 120
            V+ WL++L+D  Y M+DV+ EW+TA L+LQI G +     A + KKKV S  P+  CF 
Sbjct: 61  AVQGWLERLKDMAYQMDDVVDEWSTAILQLQIKGAE----SASMSKKKVSSCIPSP-CFC 115

Query: 121 RKPLVLRRDIALKIKEINETLDDIAKQRDMFGFAVNVIKSNERADQRVPSISSIDESEIF 180
            K +  RRDIALK+K I + LD IA QR  F F    I S     QR  + S +D  E++
Sbjct: 116 LKQVASRRDIALKVKSIKQQLDVIASQRSQFNF----ISSLSEEPQRFITTSQLDIPEVY 171

Query: 181 GREKEKNELVNRLLCESSEERK-GPRIISLVGMGGIGKTTLAQFAYNNDD 229
           GR+ +KN ++  LL E+ +E K GP IIS+VG GG+GKTTLAQ AYN+ +
Sbjct: 172 GRDMDKNTILGHLLGETCQETKSGPYIISIVGTGGMGKTTLAQLAYNHPE 221

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114848|ref|XP_002332297.1| cc-nbs resistance protein [Populus trichocarpa] gi|222832459|gb|EEE70936.1| cc-nbs resistance protein [Populus trichocarpa]

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 104/227 (45%), Positives = 157/227 (69%), Gaps = 7/227 (3%)

Query: 1   MVDAIISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKRQVKEE 60
           M  A++SP+LEQL  +  +E +E+V LV GV K+V KL S+L A+ +VL DA+++QVK+E
Sbjct: 1   MAAALLSPILEQLTRIVAQEVQEEVNLVVGVKKQVDKLKSNLLAMHSVLEDADRKQVKDE 60

Query: 61  TVRLWLDQLRDACYDMEDVLGEWNTARLKLQIDGVDDHLNDALVPKKKVCSLFPAASCFA 120
            VR W+D+L+D CYDM+DVL EW++A L+ ++   +++ +     ++K+   F    CF 
Sbjct: 61  AVRDWVDKLKDVCYDMDDVLDEWSSAILRWKMGDAEENTH----SQQKIRCSFLGFPCFC 116

Query: 121 RKPLVLRRDIALKIKEINETLDDIAKQRDMFGFAVNVIKSNERADQRVPSISSIDESEIF 180
              +V RRDIALKIKE+ E LD+IAK++ M+GF   + ++ +   QR+ S S +DES + 
Sbjct: 117 FNQVVRRRDIALKIKEVCEKLDEIAKEKAMYGF--ELYRATDEL-QRITSTSLVDESIVS 173

Query: 181 GREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227
           GR+ E+  +V++LL ES +E      ISLVG+GGIGKTTLAQ A+N+
Sbjct: 174 GRDDEREAVVSKLLGESRQEAWDVYAISLVGLGGIGKTTLAQLAFND 220

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482784|ref|XP_002269044.2| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera]

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 109/230 (47%), Positives = 155/230 (67%), Gaps = 10/230 (4%)

Query: 1   MVDAIISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKRQVKEE 60
           M DA++S +LE+L SV  ++ ++++ LV GV  E++ LT +LR+V+ VL DAE+RQVKE+
Sbjct: 1   MADALLSIVLERLASVVEQQIRDELTLVLGVEAEIQSLTDTLRSVRDVLEDAERRQVKEK 60

Query: 61  TVRLWLDQLRDACYDMEDVLGEWNTARLKLQIDGVDDHLNDALVPKKKVCSLFPAASCFA 120
           +V+ WL++L+D  Y M+DV+ EW+TA L+LQI G +     A + KKKV S  P+  CF 
Sbjct: 61  SVQGWLERLKDMAYQMDDVVDEWSTAILQLQIKGAE----SASMSKKKVSSCIPSP-CFC 115

Query: 121 RKPLVLRRDIALKIKEINETLDDIAKQRDMFGFAVNVIKSNERADQRVPSISSIDESEIF 180
            K +  RRDIALKIK I + LD IA QR  F F    I S     QR  + S +D  E++
Sbjct: 116 LKQVASRRDIALKIKGIKQQLDVIASQRSQFNF----ISSLSEEPQRFITTSQLDIPEVY 171

Query: 181 GREKEKNELVNRLLCESSEERK-GPRIISLVGMGGIGKTTLAQFAYNNDD 229
           GR+ +KN ++  LL E+ +E + GP IIS+VG GG+GKTTLAQ AYN+ +
Sbjct: 172 GRDMDKNTILGHLLGETCQETESGPHIISIVGTGGMGKTTLAQLAYNHPE 221

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470202|ref|XP_002269053.1| PREDICTED: putative disease resistance protein RGA3-like [Vitis vinifera]

 Score =  191 bits (484), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 104/229 (45%), Positives = 156/229 (68%), Gaps = 9/229 (3%)

Query: 1   MVDAIISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKRQVKEE 60
           M DA++S +L++L S+  ++   +V LV GV +E++ LT++L+ V+AV+ DAEKRQV EE
Sbjct: 1   MADALLSIVLDRLASLIQQQFHHEVCLVVGVKREIQSLTNTLQIVRAVVADAEKRQVNEE 60

Query: 61  TVRLWLDQLRDACYDMEDVLGEWNTARLKLQIDGVDDHLNDALVPKKKVCSLFPAASCFA 120
            V++WL++L+D  Y M+DVL EW+TA LK QI+ V+       +PKKKV S  P+  C  
Sbjct: 61  PVKVWLERLKDIAYQMDDVLDEWSTAFLKSQIERVE----SPSMPKKKVSSCIPSP-CIC 115

Query: 121 RKPLVLRRDIALKIKEINETLDDIAKQRDMFGFAVNVIKSNERADQRVPSISSIDESEIF 180
            K +  RRDIALKIK I + +DDIA +R+ F F      +N    QR+ +IS++D +E++
Sbjct: 116 FKRVARRRDIALKIKGIKQEVDDIANERNQFDFK----STNNEELQRIITISAVDTTEVY 171

Query: 181 GREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNNDD 229
           GR++++  ++ +LL  S E+  G   IS+ GMGGIGKTTLAQ A+N+ D
Sbjct: 172 GRDRDEGIILRQLLGTSCEQSLGLYTISVFGMGGIGKTTLAQLAFNHYD 220

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482798|ref|XP_002268266.2| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera]

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 104/229 (45%), Positives = 157/229 (68%), Gaps = 9/229 (3%)

Query: 1   MVDAIISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKRQVKEE 60
           M  A++S +L +L SV  ++ ++++ LV GV  E++ LT +LR+V+ VL DAE+RQVKE+
Sbjct: 1   MAHALLSIVLTRLASVVEQQIRDELTLVLGVEAEIQSLTDTLRSVRDVLEDAERRQVKEK 60

Query: 61  TVRLWLDQLRDACYDMEDVLGEWNTARLKLQIDGVDDHLNDALVPKKKVCSLFPAASCFA 120
           +V+ WL++L+D  Y M+DVL EW+TA L+LQ++G +    +A + K KV S  P+  CF 
Sbjct: 61  SVQGWLERLKDMAYQMDDVLDEWSTAILQLQMEGAE----NASMSKNKVSSCIPSP-CFC 115

Query: 121 RKPLVLRRDIALKIKEINETLDDIAKQRDMFGFAVNVIKSNERADQRVPSISSIDESEIF 180
            K +  RRDIALKIK++ + LD IA +R  F F    I S  +  QR+ + S+ID SE++
Sbjct: 116 FKQVASRRDIALKIKDLKQQLDVIASERTRFNF----ISSGTQEPQRLITTSAIDVSEVY 171

Query: 181 GREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNNDD 229
           GR+ + N ++ RLL E+ EE+    II++VG GG+GKTTLAQ AYN+ +
Sbjct: 172 GRDTDVNAILGRLLGENDEEKSRLYIIAIVGTGGMGKTTLAQLAYNHPE 220

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
TAIR|locus:2091672	1054	AT3G14470 [Arabidopsis thalian	0.790	0.171	0.305	1.1e-19
TAIR|locus:2011982	857	AT1G50180 [Arabidopsis thalian	0.908	0.242	0.281	2.8e-14
TAIR|locus:2176486	908	RPP8 "RECOGNITION OF PERONOSPO	0.895	0.225	0.271	5.4e-12
TAIR|locus:504956483	847	AT3G46730 [Arabidopsis thalian	0.917	0.247	0.283	1.7e-11
TAIR|locus:2152536	908	AT5G48620 [Arabidopsis thalian	0.895	0.225	0.25	2.4e-11
TAIR|locus:2075170	835	RPP13 "RECOGNITION OF PERONOSP	0.917	0.251	0.296	3.4e-10
TAIR|locus:2091662	1424	AT3G14460 [Arabidopsis thalian	0.917	0.147	0.266	1.6e-09
TAIR|locus:2025916	906	AT1G59780 "AT1G59780" [Arabido	0.423	0.107	0.314	4.2e-09
TAIR|locus:504956186	1138	AT1G58602 [Arabidopsis thalian	0.441	0.088	0.284	7.9e-09
TAIR|locus:2037623	899	AT1G58410 [Arabidopsis thalian	0.847	0.215	0.258	1e-08

TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 1.1e-19, P = 1.1e-19
 Identities = 59/193 (30%), Positives = 111/193 (57%)

Query:    35 VKKLTSSLRAVQAVLHDAEKRQVKEETVRLWLDQLRDACYDMEDVLGEWNTARLKLQIDG 94
             +++L+++L  + AVL DAE++Q+    V  W+++LRD  Y  ED L +  T  L+L I G
Sbjct:    39 LERLSTALLTITAVLIDAEEKQITNPVVEKWVNELRDVVYHAEDALDDIATEALRLNI-G 97

Query:    95 VDDHLNDALVPKKKVCSLFPAASCFARKPLVLRRDIALKIKEINETLDDIAKQRDMFGFA 154
              +   ++ L   +   SL       +         +  +++++   L+ +A QR++ G  
Sbjct:    98 AESSSSNRLRQLRGRMSLGDFLDGNSEH-------LETRLEKVTIRLERLASQRNILGLK 150

Query:   155 VNVIKSNERADQRVPSISSIDESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGG 214
                    +   QR+P+ S +DESE+FGR+ +K+E++  L+ E+ ++  G  ++++VG+GG
Sbjct:   151 ELTAMIPK---QRLPTTSLVDESEVFGRDDDKDEIMRFLIPENGKDN-GITVVAIVGIGG 206

Query:   215 IGKTTLAQFAYNN 227
             +GKTTL+Q  YN+
Sbjct:   207 VGKTTLSQLLYND 219

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2011982 AT1G50180 [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 2.8e-14, P = 2.8e-14
 Identities = 64/227 (28%), Positives = 117/227 (51%)

Query:     1 MVDAIISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKRQVKEE 60
             M +AI+S  +++L  + +EE       + G+G +VK+L   L+ +   L DA+++Q + E
Sbjct:     1 MAEAIVSVTVQKLGQLLLEEPL----FLFGIGDQVKQLQDELKRLNCFLKDADEKQHESE 56

Query:    61 TVRLWLDQLRDACYDMEDVLGEWNTARLKLQIDGVDDHLNDALVPKKKVCSLFPAASCFA 120
              VR W+  +R+A YD ED+L  +       +  G+   L      ++  C L  A S  +
Sbjct:    57 RVRNWVAGIREASYDAEDILEAFFLKAESRKQKGMKRVL------RRLACILNEAVSLHS 110

Query:   121 RKPLVLRRDIALKIKEINETLDDIAKQRDMFGFAVNVIKSNERADQRVPSISSIDESEIF 180
                 +  R+I  ++ +I  ++ D   +  M    +++  S+   +QR  S   + E  + 
Sbjct:   111 VGSEI--REITSRLSKIAASMLDFGIKESMGREGLSL--SDSLREQR-QSFPYVVEHNLV 165

Query:   181 GREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227
             G E+   +LVN L+  S  E+   R+ S+ GMGG+GKTTLA+  +++
Sbjct:   166 GLEQSLEKLVNDLV--SGGEKL--RVTSICGMGGLGKTTLAKQIFHH 208

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 5.4e-12, P = 5.4e-12
 Identities = 63/232 (27%), Positives = 116/232 (50%)

Query:     1 MVDAIISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKRQVKEE 60
             M +A +S  LE+L  +    ++E  RL  G+  ++  L   LR++Q++L DA+ ++   +
Sbjct:     1 MAEAFVSFGLEKLWDLL---SRESERL-QGIDGQLDGLKRQLRSLQSLLKDADAKKHGSD 56

Query:    61 TVRLWLDQLRDACYDMEDVLGEWNTARLKLQIDGVDDHLNDALVPKKKVCSLFPAASCFA 120
              VR +L+ ++D  +D ED++  +   +L  +  GV          KK V  L    +CF 
Sbjct:    57 RVRNFLEDVKDLVFDAEDIIESYVLNKLSGKGKGV----------KKHVRRL----ACFL 102

Query:   121 RKPLVLRRDIALKIKEINETLDDIAK---QRDMFGFAVNVIKSNERADQRV-PSISSIDE 176
                  +  DI    K I+E + ++     Q+ + G     ++  +R  + +  +     E
Sbjct:   103 TDRHKVASDIEGITKRISEVIGEMQSFGIQQIIDGGRSLSLQERQRVQREIRQTYPDSSE 162

Query:   177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNND 228
             S++ G E+   ELV  L+     E    +++S+ GMGGIGKTTLA+  +++D
Sbjct:   163 SDLVGVEQSVKELVGHLV-----ENDVHQVVSIAGMGGIGKTTLARQVFHHD 209

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051707 "response to other organism" evidence=IMP

TAIR|locus:504956483 AT3G46730 [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 65/229 (28%), Positives = 105/229 (45%)

Query:     1 MVDAIISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKRQVKEE 60
             MVDA+   +L ++    + E    V  + GV  ++++L + L  +   L D E R+ ++E
Sbjct:     1 MVDAVTGFVLNKIGGYLINE----VLALMGVKDDLEELKTELTCIHGYLKDVEAREREDE 56

Query:    61 TVRLWLDQLRDACYDMEDVLGEWNTARLKLQIDGVDDHLNDALVPKKKVCSLFPAASCFA 120
               + W   + D  YD+EDVL   +T  LKL+    +  L   L+           A    
Sbjct:    57 VSKEWTKLVLDIAYDIEDVL---DTYFLKLE----ERSLRRGLLRLTNKIGKKRDAYNIV 109

Query:   121 RKPLVLRRDIALKIKEINETLDDIAKQRDMFGFAVNVIKSNERADQRVPSISSIDESEIF 180
                  L+R I L I    ET   I    +  G   N+     R  +R P +    E  + 
Sbjct:   110 EDIRTLKRRI-LDITRKRETFG-IGSFNEPRG--ENITNVRVRQLRRAPPVDQ--EELVV 163

Query:   181 GREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNNDD 229
             G E +   L+ +LL ++ +++    IIS+ GMGG+GKT LA+  YN+ D
Sbjct:   164 GLEDDVKILLVKLLSDNEKDKS--YIISIFGMGGLGKTALARKLYNSGD 210

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2152536 AT5G48620 [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 2.4e-11, P = 2.4e-11
 Identities = 58/232 (25%), Positives = 113/232 (48%)

Query:     1 MVDAIISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKRQVKEE 60
             M +  +S  LE+L  +    ++E  RL  G+ +++  L   LR++Q++L DA+ ++   +
Sbjct:     1 MAEGFVSFGLEKLWDLL---SRESERL-QGIDEQLDGLKRQLRSLQSLLKDADAKKHGSD 56

Query:    61 TVRLWLDQLRDACYDMEDVLGEWNTARLKLQIDGVDDHLNDA---LVPKKKVCSLFPAAS 117
              VR +L+ ++D  +D ED++  +   +L+ +  GV  H+      L  + KV S      
Sbjct:    57 RVRNFLEDVKDLVFDAEDIIESYVLNKLRGEGKGVKKHVRRLARFLTDRHKVASDIEG-- 114

Query:   118 CFARKPLVLRRDIALKIKEINETLDDIAKQRDMFGFAVNVIKSNERADQRV-PSISSIDE 176
                         I  +I ++   +     Q+ + G     ++  +R  + +  +     E
Sbjct:   115 ------------ITKRISDVIGEMQSFGIQQIIDGVRSLSLQERQRVQREIRQTYPDSSE 162

Query:   177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNND 228
             S++ G E+   ELV  L+     E    +++S+ GMGGIGKTTLA+  +++D
Sbjct:   163 SDLVGVEQSVEELVGHLV-----ENDIYQVVSIAGMGGIGKTTLARQVFHHD 209

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2075170 RPP13 "RECOGNITION OF PERONOSPORA PARASITICA 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 3.4e-10, P = 3.4e-10
 Identities = 68/229 (29%), Positives = 105/229 (45%)

Query:     1 MVDAIISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKRQVKEE 60
             MVDAI   ++ ++ +  +EEA     +   V +++++L + L  +   L D E R+ ++E
Sbjct:     1 MVDAITEFVVGKIGNYLIEEAS----MFMAVKEDLEELKTELTCIHGYLKDVEAREREDE 56

Query:    61 TVRLWLDQLRDACYDMEDVLGEWNTARLKLQIDGVDDHLNDALVPKKKVCSLFPAASCFA 120
               + W   + D  YD+EDVL   +T  LKL+       L        K+     A S   
Sbjct:    57 VSKEWSKLVLDFAYDVEDVL---DTYHLKLEERSQRRGLRRLT---NKIGRKMDAYS-IV 109

Query:   121 RKPLVLRRDIALKIKEINETLDDIAKQRDMFGFAVNVIKSNERADQRVPSISSIDESEIF 180
                 +L+R I L I    ET   I   ++  G   N      R  +R  S+    E  + 
Sbjct:   110 DDIRILKRRI-LDITRKRETYG-IGGLKEPQGGG-NTSSLRVRQLRRARSVDQ--EEVVV 164

Query:   181 GREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNNDD 229
             G E +   L+ +LL     E K   IIS+ GMGG+GKT LA+  YN+ D
Sbjct:   165 GLEDDAKILLEKLL---DYEEKNRFIISIFGMGGLGKTALARKLYNSRD 210

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=TAS

GO:0009814 "defense response, incompatible interaction" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 1.6e-09, P = 1.6e-09
 Identities = 62/233 (26%), Positives = 106/233 (45%)

Query:     1 MVDAIISPLLEQLISVAVEEAKEQVRLVTGVGKE--VKKLTSSLRAVQAVLHDAEKRQVK 58
             M ++ +S     ++   +  ++E V L  G      +K+L  +L     VL DA++R   
Sbjct:     1 MANSYLSSCANVMVE-RINTSQELVELCKGKSSSALLKRLKVALVTANPVLADADQRAEH 59

Query:    59 EETVRLWLDQLRDACYDMEDVLGEWNTARLKLQIDGVDDHLNDALVPKKKVCSLFPAASC 118
                V+ WL  ++DA +  ED+L E  T  L+ ++      L            LF   + 
Sbjct:    60 VREVKHWLTGIKDAFFQAEDILDELQTEALRRRVVAEAGGLG----------GLFQ--NL 107

Query:   119 FARKPLVLRRDIALKIKEINETLDDIAKQRDMFGFAVNVIKSNERADQ-RVPSISSIDE- 176
              A +  + ++ I  K++++   L+   K  ++ G       S  R  Q R  S S  D+ 
Sbjct:   108 MAGREAIQKK-IEPKMEKVVRLLEHHVKHIEVIGLKEY---SETREPQWRQASRSRPDDL 163

Query:   177 --SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227
                 + GR ++K  LVN LL +       P +IS+VGM G+GKTTL +  +N+
Sbjct:   164 PQGRLVGRVEDKLALVNLLLSDDEISIGKPAVISVVGMPGVGKTTLTEIVFND 216

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2025916 AT1G59780 "AT1G59780" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 4.2e-09, Sum P(2) = 4.2e-09
 Identities = 34/108 (31%), Positives = 58/108 (53%)

Query:   127 RRDIALKIKEINETLDDIAKQRDMFGFAVNV---IKSN---ERADQRVPSISSIDESEIF 180
             RR+IAL+I  I++ +  + +     G   ++   + S+   ER  +   + SS  ES + 
Sbjct:   102 RREIALQITSISKRISKVIQVMQNLGIKSDIMDGVDSHAQLERKRELRHTFSSESESNLV 161

Query:   181 GREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNND 228
             G EK   +LV  L+   S    G   +S+ G+GG+GKTTLA+  +++D
Sbjct:   162 GLEKNVEKLVEELVGNDSSH--G---VSITGLGGLGKTTLARQIFDHD 204

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:504956186 AT1G58602 [Arabidopsis thaliana (taxid:3702)]

 Score = 105 (42.0 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
 Identities = 31/109 (28%), Positives = 56/109 (51%)

Query:    12 QLISVAVEEA----KEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKRQVKEETVRLWLD 67
             +L+S AV +       +  L  GV  +V +L S L  +++ L DA+ ++     VR  ++
Sbjct:     4 ELVSFAVNKLWDLLSHEYTLFQGVEDQVAELKSDLNLLKSFLKDADAKKHTSALVRYCVE 63

Query:    68 QLRDACYDMEDVLGEWNTARLKL-QIDGVDDHLN--DALVPKKKVCSLF 113
             +++D  YD EDVL E    + KL    G+  H+     +VP ++  +L+
Sbjct:    64 EIKDIVYDAEDVL-ETFVQKEKLGTTSGIRKHIKRLTCIVPDRREIALY 111

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2037623 AT1G58410 [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 59/228 (25%), Positives = 111/228 (48%)

Query:    12 QLISVAVEEA----KEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKRQVKEETVRLWLD 67
             +L+S  VE+      ++     GV  +V +L S+L  +++ L DA+ ++   E VR  ++
Sbjct:     2 ELVSFGVEKLWDRLSQEYDQFKGVEDQVTELKSNLNLLKSFLKDADAKKHISEMVRHCVE 61

Query:    68 QLRDACYDMEDVLGEWNTARLKLQIDGVDDHLNDALVPKKKVCSLFPAASCFARKPLVLR 127
             +++D  YD ED++    T  LK +++     +   ++ + K          FA   ++ R
Sbjct:    62 EIKDIVYDTEDII---ETFILKEKVE-----MKRGIMKRIKR---------FA-STIMDR 103

Query:   128 RDIALKIKEINETLDDIAKQRDMFGFAVNVIKSN-------ERADQRVPSISSIDESEIF 180
             R++A  I  I++ +  + +    FG    +   +       ER  +   + S   E++  
Sbjct:   104 RELASDIGGISKRISKVIQDMQSFGVQQIITDGSRSSHPLQERQREMRHTFSRDSENDFV 163

Query:   181 GREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNND 228
             G E    +LV  L+     E+   +I+SL GMGG+GKTTLA+  +N+D
Sbjct:   164 GMEANVKKLVGYLV-----EKDDYQIVSLTGMGGLGKTTLARQVFNHD 206

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	229
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	6e-08

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score = 51.6 bits (124), Expect = 6e-08
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 4/47 (8%)

Query: 182 REKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNND 228
           RE     L+ +L     E      ++ +VGMGG+GKTTLA+  YN+D
Sbjct: 1   REDMIEALIEKL----LEMSDNLGVVGIVGMGGVGKTTLAKQIYNDD 43

Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	229
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.84
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.99
PTZ00202	550	tuzin; Provisional	98.3
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	98.03
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	97.94
PRK00411	394	cdc6 cell division control protein 6; Reviewed	97.89
PF05659	147	RPW8: Arabidopsis broad-spectrum mildew resistance	97.78
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	97.67
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	97.63
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	97.56
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	97.51
PRK15455	644	PrkA family serine protein kinase; Provisional	97.47
PRK13342	413	recombination factor protein RarA; Reviewed	97.44
PRK04195	482	replication factor C large subunit; Provisional	97.37
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	97.35
PHA02544	316	44 clamp loader, small subunit; Provisional	97.32
PF12061	402	DUF3542: Protein of unknown function (DUF3542); In	97.31
CHL00095	821	clpC Clp protease ATP binding subunit	97.3
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.27
PRK12402	337	replication factor C small subunit 2; Reviewed	97.27
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	97.23
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	97.23
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	97.22
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	97.21
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	97.19
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	97.16
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	97.15
PRK10865	857	protein disaggregation chaperone; Provisional	97.15
PRK00440	319	rfc replication factor C small subunit; Reviewed	97.14
PRK09376	416	rho transcription termination factor Rho; Provisio	97.13
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	97.13
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	97.11
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	97.08
PRK13341	725	recombination factor protein RarA/unknown domain f	97.05
PRK03992	389	proteasome-activating nucleotidase; Provisional	97.0
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.0
PRK08903	227	DnaA regulatory inactivator Hda; Validated	96.98
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	96.92
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	96.92
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	96.88
PRK09087	226	hypothetical protein; Validated	96.87
COG2256	436	MGS1 ATPase related to the helicase subunit of the	96.85
KOG2028	554	consensus ATPase related to the helicase subunit o	96.84
CHL00181	287	cbbX CbbX; Provisional	96.82
PLN02318	656	phosphoribulokinase/uridine kinase	96.8
PTZ00112	1164	origin recognition complex 1 protein; Provisional	96.79
PRK05439	311	pantothenate kinase; Provisional	96.76
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	96.74
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.74
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	96.74
PRK10416	318	signal recognition particle-docking protein FtsY;	96.71
PRK06620	214	hypothetical protein; Validated	96.71
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	96.7
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	96.69
PRK08084	235	DNA replication initiation factor; Provisional	96.69
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	96.66
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	96.66
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	96.65
PRK13531	498	regulatory ATPase RavA; Provisional	96.65
PLN02796	347	D-glycerate 3-kinase	96.64
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	96.59
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	96.59
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	96.57
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	96.56
PLN02200	234	adenylate kinase family protein	96.56
PF08298	358	AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi	96.55
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	96.53
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	96.53
PRK08727	233	hypothetical protein; Validated	96.52
PRK06893	229	DNA replication initiation factor; Validated	96.5
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	96.48
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	96.47
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	96.47
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	96.46
PRK08099	399	bifunctional DNA-binding transcriptional repressor	96.46
TIGR00064	272	ftsY signal recognition particle-docking protein F	96.45
PLN02348	395	phosphoribulokinase	96.45
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	96.45
PRK10536	262	hypothetical protein; Provisional	96.43
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	96.42
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	96.41
PRK09435	332	membrane ATPase/protein kinase; Provisional	96.41
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	96.38
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	96.36
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	96.35
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	96.35
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	96.34
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	96.33
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	96.31
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	96.31
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	96.31
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	96.31
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	96.29
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	96.28
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	96.25
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	96.25
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	96.24
PLN03046	460	D-glycerate 3-kinase; Provisional	96.24
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	96.24
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	96.23
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	96.23
PRK05642	234	DNA replication initiation factor; Validated	96.22
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	96.22
PRK14974	336	cell division protein FtsY; Provisional	96.22
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	96.21
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	96.21
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	96.19
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	96.19
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	96.18
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	96.18
TIGR03815	322	CpaE_hom_Actino helicase/secretion neighborhood Cp	96.18
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	96.18
PLN02165	334	adenylate isopentenyltransferase	96.17
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	96.16
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	96.15
PRK10867	433	signal recognition particle protein; Provisional	96.14
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	96.14
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	96.14
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	96.13
TIGR00767	415	rho transcription termination factor Rho. Members	96.13
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	96.11
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	96.11
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	96.1
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	96.1
PRK13546	264	teichoic acids export protein ATP-binding subunit;	96.09
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	96.09
PRK14489	366	putative bifunctional molybdopterin-guanine dinucl	96.08
COG1123	539	ATPase components of various ABC-type transport sy	96.05
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	96.04
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	96.03
PRK00771	437	signal recognition particle protein Srp54; Provisi	96.03
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	96.03
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	96.02
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	96.01
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	96.01
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	96.0
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	96.0
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	95.99
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	95.97
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	95.97
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	95.97
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	95.96
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	95.96
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	95.95
PRK00098	298	GTPase RsgA; Reviewed	95.95
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	95.95
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	95.94
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	95.93
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	95.93
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	95.93
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	95.91
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	95.91
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	95.91
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	95.9
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	95.9
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	95.89
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	95.86
PRK09183	259	transposase/IS protein; Provisional	95.86
PF13555	62	AAA_29: P-loop containing region of AAA domain	95.85
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	95.85
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	95.82
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	95.82
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	95.81
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	95.81
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	95.81
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	95.81
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	95.81
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	95.8
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	95.77
PF13245	76	AAA_19: Part of AAA domain	95.77
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	95.75
PRK13705	388	plasmid-partitioning protein SopA; Provisional	95.75
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	95.73
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	95.7
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	95.7
TIGR00959	428	ffh signal recognition particle protein. This mode	95.7
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	95.69
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	95.67
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	95.67
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	95.66
PRK10865	857	protein disaggregation chaperone; Provisional	95.65
PRK12422	445	chromosomal replication initiation protein; Provis	95.65
PRK06526	254	transposase; Provisional	95.65
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	95.65
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	95.65
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	95.65
COG0714	329	MoxR-like ATPases [General function prediction onl	95.65
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	95.64
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	95.64
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	95.63
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	95.61
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	95.61
PRK13536	340	nodulation factor exporter subunit NodI; Provision	95.6
PRK00149	450	dnaA chromosomal replication initiation protein; R	95.6
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	95.6
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	95.6
PRK10261	623	glutathione transporter ATP-binding protein; Provi	95.59
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	95.59
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	95.57
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	95.57
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	95.56
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	95.56
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	95.55
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	95.54
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	95.54
KOG1969	877	consensus DNA replication checkpoint protein CHL12	95.53
PRK12288	347	GTPase RsgA; Reviewed	95.53
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	95.52
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	95.51
TIGR00764	608	lon_rel lon-related putative ATP-dependent proteas	95.5
PRK12289	352	GTPase RsgA; Reviewed	95.49
PRK15064	530	ABC transporter ATP-binding protein; Provisional	95.49
PRK09112	351	DNA polymerase III subunit delta'; Validated	95.48
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	95.48
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	95.48
PRK07952	244	DNA replication protein DnaC; Validated	95.48
CHL00176	638	ftsH cell division protein; Validated	95.47
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	95.47
PRK13409	590	putative ATPase RIL; Provisional	95.47
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	95.47
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	95.47
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	95.47
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	95.47
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	95.45
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	95.45
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	95.44
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	95.44
TIGR01817	534	nifA Nif-specific regulatory protein. This model r	95.43
PRK10261	623	glutathione transporter ATP-binding protein; Provi	95.43
PRK13409	590	putative ATPase RIL; Provisional	95.42
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	95.42
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	95.42
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	95.4
PRK11147	635	ABC transporter ATPase component; Reviewed	95.4
KOG0924	1042	consensus mRNA splicing factor ATP-dependent RNA h	95.38
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	95.38
PRK13869	405	plasmid-partitioning protein RepA; Provisional	95.38
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	95.38
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	95.37
PF14532	138	Sigma54_activ_2: Sigma-54 interaction domain; PDB:	95.36
PRK04220	301	2-phosphoglycerate kinase; Provisional	95.35
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	95.35
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	95.34
PRK12377	248	putative replication protein; Provisional	95.32
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	95.32
COG0488	530	Uup ATPase components of ABC transporters with dup	95.3
PRK15494	339	era GTPase Era; Provisional	95.3
PRK03003	472	GTP-binding protein Der; Reviewed	95.3
TIGR03453	387	partition_RepA plasmid partitioning protein RepA.	95.29
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	95.29
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	95.29
PRK01889	356	GTPase RsgA; Reviewed	95.29
PLN03073	718	ABC transporter F family; Provisional	95.28
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	95.28
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	95.27
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	95.26
PHA02519	387	plasmid partition protein SopA; Reviewed	95.26
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	95.25
PRK10938	490	putative molybdenum transport ATP-binding protein	95.24
PRK10646	153	ADP-binding protein; Provisional	95.21
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	95.19
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	95.19
COG1875	436	NYN ribonuclease and ATPase of PhoH family domains	95.17
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	95.13
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	95.12
PRK03003	472	GTP-binding protein Der; Reviewed	95.11
PRK07471	365	DNA polymerase III subunit delta'; Validated	95.11
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	95.1
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	95.1
PRK08116	268	hypothetical protein; Validated	95.07
PHA02244	383	ATPase-like protein	95.05
PLN03073	718	ABC transporter F family; Provisional	95.04
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	95.03
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	95.01
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	95.0
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	94.97
PRK13851	344	type IV secretion system protein VirB11; Provision	94.96
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	94.94
KOG0781	587	consensus Signal recognition particle receptor, al	94.93
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	94.92
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	94.92
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	94.9
PRK12337	475	2-phosphoglycerate kinase; Provisional	94.89
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	94.89
PRK14088	440	dnaA chromosomal replication initiation protein; P	94.88
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	94.87
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	94.86
PRK06851	367	hypothetical protein; Provisional	94.84
PRK14087	450	dnaA chromosomal replication initiation protein; P	94.83
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	94.81
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	94.79
KOG0927	614	consensus Predicted transporter (ABC superfamily)	94.78
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	94.77
PRK06921	266	hypothetical protein; Provisional	94.74
PLN02199	303	shikimate kinase	94.74
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	94.73
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	94.73
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	94.72
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	94.71
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	94.7
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	94.7
PRK10522	547	multidrug transporter membrane component/ATP-bindi	94.67
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	94.65
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	94.64
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	94.62
KOG0062	582	consensus ATPase component of ABC transporters wit	94.61
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	94.6
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	94.59
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	94.59
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	94.56
PRK00652	325	lpxK tetraacyldisaccharide 4'-kinase; Reviewed	94.55
cd01133	274	F1-ATPase_beta F1 ATP synthase beta subunit, nucle	94.54
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	94.54
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	94.54
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	94.53
CHL00095	821	clpC Clp protease ATP binding subunit	94.51
COG4987	573	CydC ABC-type transport system involved in cytochr	94.51
cd00983	325	recA RecA is a bacterial enzyme which has roles in	94.49
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	94.48
PRK09866	741	hypothetical protein; Provisional	94.48
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	94.46
PRK06835	329	DNA replication protein DnaC; Validated	94.44
TIGR03018	207	pepcterm_TyrKin exopolysaccharide/PEPCTERM locus t	94.43
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	94.42
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	94.41
PTZ00035	337	Rad51 protein; Provisional	94.41
PRK08181	269	transposase; Validated	94.38
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	94.37
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	94.37
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	94.36
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	94.35
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	94.35
PTZ00494	664	tuzin-like protein; Provisional	94.33
PHA02624	647	large T antigen; Provisional	94.32
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	94.31
COG1162	301	Predicted GTPases [General function prediction onl	94.3
TIGR02236	310	recomb_radA DNA repair and recombination protein R	94.3
COG1123	539	ATPase components of various ABC-type transport sy	94.26
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	94.24
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	94.22
PRK13894	319	conjugal transfer ATPase TrbB; Provisional	94.22
PRK14086	617	dnaA chromosomal replication initiation protein; P	94.21
PRK05973	237	replicative DNA helicase; Provisional	94.18
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	94.14
PRK15429	686	formate hydrogenlyase transcriptional activator Fh	94.09
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	94.05
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	94.04
COG4240	300	Predicted kinase [General function prediction only	94.02
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	93.94
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	93.93
KOG0727	408	consensus 26S proteasome regulatory complex, ATPas	93.92
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	93.9
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	93.9
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	93.9
PRK00093	435	GTP-binding protein Der; Reviewed	93.87
PRK09354	349	recA recombinase A; Provisional	93.87
PLN02772	398	guanylate kinase	93.86
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	93.84
PRK04301	317	radA DNA repair and recombination protein RadA; Va	93.84
PRK13765	637	ATP-dependent protease Lon; Provisional	93.82
PRK08939	306	primosomal protein DnaI; Reviewed	93.81
TIGR02239	316	recomb_RAD51 DNA repair protein RAD51. This eukary	93.81
PLN03211	659	ABC transporter G-25; Provisional	93.79
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	93.79
PRK05022	509	anaerobic nitric oxide reductase transcription reg	93.76
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	93.71
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	93.68
COG1484	254	DnaC DNA replication protein [DNA replication, rec	93.68
PRK12608	380	transcription termination factor Rho; Provisional	93.66
TIGR03819	340	heli_sec_ATPase helicase/secretion neighborhood AT	93.66
COG0593	408	DnaA ATPase involved in DNA replication initiation	93.64
COG4181	228	Predicted ABC-type transport system involved in ly	93.63
COG0802	149	Predicted ATPase or kinase [General function predi	93.63
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	93.6
smart00350	509	MCM minichromosome maintenance proteins.	93.59
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	93.59
TIGR02525	372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	93.58
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	93.55
COG1084	346	Predicted GTPase [General function prediction only	93.51
PRK13764	602	ATPase; Provisional	93.49
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	93.44
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	93.43
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	93.42
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	93.41
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	93.39
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	93.3
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	93.29
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	93.27
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	93.26
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	93.21
PRK13833	323	conjugal transfer protein TrbB; Provisional	93.19
KOG4181	491	consensus Uncharacterized conserved protein [Funct	93.17
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	93.14
KOG0738	491	consensus AAA+-type ATPase [Posttranslational modi	93.11
COG4172	534	ABC-type uncharacterized transport system, duplica	93.11
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	93.09
PRK09563	287	rbgA GTPase YlqF; Reviewed	93.09
TIGR02533	486	type_II_gspE general secretory pathway protein E.	93.08
PLN03187	344	meiotic recombination protein DMC1 homolog; Provis	93.08
PRK11388	638	DNA-binding transcriptional regulator DhaR; Provis	93.01
PRK08149	428	ATP synthase SpaL; Validated	93.01
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	93.0
COG4988	559	CydD ABC-type transport system involved in cytochr	93.0
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	92.96
PRK10923	469	glnG nitrogen regulation protein NR(I); Provisiona	92.95
PRK15424	538	propionate catabolism operon regulatory protein Pr	92.95
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	92.94
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	92.94
PRK08972	444	fliI flagellum-specific ATP synthase; Validated	92.86
TIGR02329	526	propionate_PrpR propionate catabolism operon regul	92.86
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	92.8
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	92.79
CHL00195	489	ycf46 Ycf46; Provisional	92.79
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	92.78
TIGR02768	744	TraA_Ti Ti-type conjugative transfer relaxase TraA	92.78
PRK12298	390	obgE GTPase CgtA; Reviewed	92.77
COG3854	308	SpoIIIAA ncharacterized protein conserved in bacte	92.69
COG1341	398	Predicted GTPase or GTP-binding protein [General f	92.67
KOG0651	388	consensus 26S proteasome regulatory complex, ATPas	92.67
PRK12299	335	obgE GTPase CgtA; Reviewed	92.64
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	92.64
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	92.63
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	92.6
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	92.57
COG0468	279	RecA RecA/RadA recombinase [DNA replication, recom	92.53
KOG0728	404	consensus 26S proteasome regulatory complex, ATPas	92.47
TIGR03029	274	EpsG chain length determinant protein tyrosine kin	92.46
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	92.45
PRK08927	442	fliI flagellum-specific ATP synthase; Validated	92.42
KOG0726	440	consensus 26S proteasome regulatory complex, ATPas	92.33
PRK11058	426	GTPase HflX; Provisional	92.27
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	92.25
KOG2227	529	consensus Pre-initiation complex, subunit CDC6, AA	92.23
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	92.23
PRK11823	446	DNA repair protein RadA; Provisional	92.22
PLN03186	342	DNA repair protein RAD51 homolog; Provisional	92.1
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	92.09
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	92.07
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	92.03
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	91.98
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	91.98
PRK05922	434	type III secretion system ATPase; Validated	91.97
COG1855	604	ATPase (PilT family) [General function prediction	91.94
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	91.88
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	91.83
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	91.79
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	91.78
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	91.77
TIGR02915	445	PEP_resp_reg putative PEP-CTERM system response re	91.73
PRK08472	434	fliI flagellum-specific ATP synthase; Validated	91.71
PLN03232	1495	ABC transporter C family member; Provisional	91.59
PRK14712	1623	conjugal transfer nickase/helicase TraI; Provision	91.59
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	91.58
COG4586	325	ABC-type uncharacterized transport system, ATPase	91.56
PRK06936	439	type III secretion system ATPase; Provisional	91.56
PRK09862	506	putative ATP-dependent protease; Provisional	91.47
KOG0410	410	consensus Predicted GTP binding protein [General f	91.4
PRK05688	451	fliI flagellum-specific ATP synthase; Validated	91.4
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	91.39
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	91.39
CHL00189	742	infB translation initiation factor 2; Provisional	91.34
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	91.29
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	91.28
PLN03140	1470	ABC transporter G family member; Provisional	91.26
TIGR03498	418	FliI_clade3 flagellar protein export ATPase FliI.	91.25
KOG2743	391	consensus Cobalamin synthesis protein [Coenzyme tr	91.21
PRK13826	1102	Dtr system oriT relaxase; Provisional	91.2
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	91.2
PRK07594	433	type III secretion system ATPase SsaN; Validated	91.19
KOG1805	1100	consensus DNA replication helicase [Replication, r	91.18
PRK07960	455	fliI flagellum-specific ATP synthase; Validated	91.17
PRK12297	424	obgE GTPase CgtA; Reviewed	91.15
PLN03140	1470	ABC transporter G family member; Provisional	91.15
PRK06820	440	type III secretion system ATPase; Validated	91.14
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	91.05
PF01580	205	FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR00	91.03
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	90.96
PLN03130	1622	ABC transporter C family member; Provisional	90.95
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	90.9
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	90.84
TIGR03496	411	FliI_clade1 flagellar protein export ATPase FliI.	90.83
PRK13709	1747	conjugal transfer nickase/helicase TraI; Provision	90.61
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	90.54
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	90.5
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	90.5
PTZ00111	915	DNA replication licensing factor MCM4; Provisional	90.49
COG3910	233	Predicted ATPase [General function prediction only	90.48
PTZ00243	1560	ABC transporter; Provisional	90.46
PRK09099	441	type III secretion system ATPase; Provisional	90.37
PRK07940	394	DNA polymerase III subunit delta'; Validated	90.33
PRK11670	369	antiporter inner membrane protein; Provisional	90.3
COG1373	398	Predicted ATPase (AAA+ superfamily) [General funct	90.25
KOG0989	346	consensus Replication factor C, subunit RFC4 [Repl	90.21
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	90.21
PRK13796	365	GTPase YqeH; Provisional	90.21
COG3598	402	RepA RecA-family ATPase [DNA replication, recombin	90.18
KOG0927	614	consensus Predicted transporter (ABC superfamily)	90.16
PRK12678	672	transcription termination factor Rho; Provisional	90.14
TIGR03497	413	FliI_clade2 flagellar protein export ATPase FliI.	90.0
PF08423	256	Rad51: Rad51; InterPro: IPR013632 This domain is f	89.96

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.84  E-value=4.5e-20  Score=167.44  Aligned_cols=199  Identities=20%  Similarity=0.282  Sum_probs=136.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHhhhhhhhhhhh
Q 037814            4 AIISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKRQVKEETVRLWLDQLRDACYDMEDVLGEW   83 (229)
Q Consensus         4 ~~v~~~~~~l~~~l~~~l~~~~~~~~~~~~~l~~L~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~l~~~~yd~eD~lD~~   83 (229)
                      +.++..++++.+.    +.+....+.+.++.+..|++.|..++.++++++........+..|...++++.|+++|+++.|
T Consensus         3 ~~~s~~~~~~~~~----l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~   78 (889)
T KOG4658|consen    3 ACVSFGVEKLDQL----LNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLF   78 (889)
T ss_pred             eEEEEehhhHHHH----HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455666665    778888899999999999999999999999999998888999999999999999999999999


Q ss_pred             HHHHHHHHhhccCCccccCCCcccccccccCCccccccCchhhhHHHHHHHHHHHHHHHHHHHHhhhhCCcccccccc--
Q 037814           84 NTARLKLQIDGVDDHLNDALVPKKKVCSLFPAASCFARKPLVLRRDIALKIKEINETLDDIAKQRDMFGFAVNVIKSN--  161 (229)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~l~~~~~~~~~~~~~~~~~~~~--  161 (229)
                      .......+..+.-       .......+.+    |.+    .++++.+..+..+..++..+.+....+..........  
T Consensus        79 ~v~~~~~~~~~~l-------~~~~~~~~~~----c~~----~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~  143 (889)
T KOG4658|consen   79 LVEEIERKANDLL-------STRSVERQRL----CLC----GFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGES  143 (889)
T ss_pred             HHHHHHHHHhHHh-------hhhHHHHHHH----hhh----hhHhHhhhhhHhHHHHHHHHHHHHHHhccccceeccccc
Confidence            9666554322110       0000000100    001    3344455555555555555544444444322111111  


Q ss_pred             cccCCCCCCCCCCCCCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcCC
Q 037814          162 ERADQRVPSISSIDESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNND  228 (229)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d~  228 (229)
                      ......+++.+..+... ||.+..++++++.|++++      ..|++|+||||+||||||++|||+.
T Consensus       144 ~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~  203 (889)
T KOG4658|consen  144 LDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKF  203 (889)
T ss_pred             ccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhccc
Confidence            11122344555555555 999999999999999876      2899999999999999999999985

>PLN03210 Resistant to P

Probab=98.99  E-value=4.4e-10  Score=106.80  Aligned_cols=48  Identities=29%  Similarity=0.449  Sum_probs=42.0

Q ss_pred             CCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          176 ESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       176 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ...+||++.++++|..+|.-+.    ++.+||+||||||+||||||+.+|+.
T Consensus       183 ~~~~vG~~~~l~~l~~lL~l~~----~~~~vvgI~G~gGiGKTTLA~~l~~~  230 (1153)
T PLN03210        183 FEDFVGIEDHIAKMSSLLHLES----EEVRMVGIWGSSGIGKTTIARALFSR  230 (1153)
T ss_pred             cccccchHHHHHHHHHHHcccc----CceEEEEEEcCCCCchHHHHHHHHHH
Confidence            3569999999999999885443    56899999999999999999999875

syringae 6; Provisional

>PTZ00202 tuzin; Provisional

Probab=98.30  E-value=1.2e-05  Score=67.93  Aligned_cols=50  Identities=26%  Similarity=0.359  Sum_probs=40.5

Q ss_pred             CCCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          175 DESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       175 ~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      +...++||+.+...|...|.+.+.   .-..++.|.|++|+|||||++.+...
T Consensus       260 ~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~  309 (550)
T PTZ00202        260 VIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRK  309 (550)
T ss_pred             CccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            345799999999999999965432   23469999999999999999987653

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=98.03  E-value=5.8e-06  Score=69.40  Aligned_cols=52  Identities=21%  Similarity=0.310  Sum_probs=40.4

Q ss_pred             CCCCCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          173 SIDESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       173 ~~~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+.+..++||+.+.+.|..+|...-.  ......+-|+|.+|+||||+++.+++
T Consensus        11 ~~~p~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~   62 (365)
T TIGR02928        11 DYVPDRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMK   62 (365)
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHH
Confidence            33345799999999999999864221  12335689999999999999999986

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>smart00763 AAA_PrkA PrkA AAA domain

Probab=97.94  E-value=9.9e-06  Score=66.96  Aligned_cols=51  Identities=24%  Similarity=0.375  Sum_probs=41.3

Q ss_pred             CCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          176 ESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       176 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ..+++|.++.++++++++..........-+++.++|..|+||||||+.+.+
T Consensus        50 ~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~  100 (361)
T smart00763       50 DHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKR  100 (361)
T ss_pred             chhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            347999999999999999764321124578999999999999999998754

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=97.89  E-value=1.5e-05  Score=67.65  Aligned_cols=51  Identities=24%  Similarity=0.242  Sum_probs=39.0

Q ss_pred             CCCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          175 DESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       175 ~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .+..++||+++.++|...|...-..  .....+-|+|..|+||||+++.++++
T Consensus        28 ~P~~l~~Re~e~~~l~~~l~~~~~~--~~~~~~lI~G~~GtGKT~l~~~v~~~   78 (394)
T PRK00411         28 VPENLPHREEQIEELAFALRPALRG--SRPLNVLIYGPPGTGKTTTVKKVFEE   78 (394)
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHhCC--CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999998543210  22344679999999999999999864

>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots

Probab=97.78  E-value=0.0012  Score=48.01  Aligned_cols=83  Identities=10%  Similarity=0.209  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcccC-cHHHHHHHHHHHHHhhhhhhhh
Q 037814            2 VDAIISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKRQVK-EETVRLWLDQLRDACYDMEDVL   80 (229)
Q Consensus         2 a~~~v~~~~~~l~~~l~~~l~~~~~~~~~~~~~l~~L~~~l~~i~~~l~~a~~~~~~-~~~~~~wl~~l~~~~yd~eD~l   80 (229)
                      |+.+.+++++.+.+.|...+.+.......++.-+++|..+++.|..++.+.+..+.. +..-..-++++.+...++++++
T Consensus         3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV   82 (147)
T PF05659_consen    3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV   82 (147)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence            455566666666666666677777778889999999999999999999999986432 2333777889999999999999


Q ss_pred             hhhH
Q 037814           81 GEWN   84 (229)
Q Consensus        81 D~~~   84 (229)
                      +.|.
T Consensus        83 ~k~s   86 (147)
T PF05659_consen   83 EKCS   86 (147)
T ss_pred             HHhc
Confidence            8876

Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=97.67  E-value=3.4e-05  Score=63.89  Aligned_cols=50  Identities=32%  Similarity=0.387  Sum_probs=38.2

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .+++|++..++.+..++..... .......+-|+|..|+||||||+.+.+.
T Consensus        25 ~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~   74 (328)
T PRK00080         25 DEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANE   74 (328)
T ss_pred             HHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHH
Confidence            4699999999999888864211 0133567789999999999999998653

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=97.63  E-value=7e-05  Score=57.89  Aligned_cols=50  Identities=28%  Similarity=0.359  Sum_probs=32.5

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .+++|-+.-+..+.-++..... ..+.+.-+-.||.+|+||||||+.|-+.
T Consensus        24 ~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e   73 (233)
T PF05496_consen   24 DEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANE   73 (233)
T ss_dssp             CCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHH
T ss_pred             HHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhc
Confidence            4689998888877655532110 1145788889999999999999988653

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=97.56  E-value=0.0002  Score=61.07  Aligned_cols=42  Identities=29%  Similarity=0.381  Sum_probs=35.7

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .++++.+...+.+...|...        +.|.++|++|+||||||+.+.+
T Consensus       175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~  216 (459)
T PRK11331        175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAY  216 (459)
T ss_pred             hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHH
Confidence            45888899999999998743        4677899999999999999865

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=97.51  E-value=0.00013  Score=58.47  Aligned_cols=24  Identities=33%  Similarity=0.385  Sum_probs=21.8

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhcC
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      -.++.|+|..|+|||||++.+++.
T Consensus        43 ~~~~~l~G~~G~GKTtl~~~l~~~   66 (269)
T TIGR03015        43 EGFILITGEVGAGKTTLIRNLLKR   66 (269)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHh
Confidence            468999999999999999999875

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=97.47  E-value=0.00014  Score=63.54  Aligned_cols=49  Identities=24%  Similarity=0.354  Sum_probs=37.8

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +++|.++.+++|++.|....-.-...-+|+.++|..|+||||||+.+.+
T Consensus        77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~  125 (644)
T PRK15455         77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS  125 (644)
T ss_pred             cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence            5899999999999999221100013457999999999999999998753

>PRK13342 recombination factor protein RarA; Reviewed

Probab=97.44  E-value=0.00011  Score=62.91  Aligned_cols=44  Identities=30%  Similarity=0.315  Sum_probs=32.7

Q ss_pred             cceechhhHHH---HHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          178 EIFGREKEKNE---LVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       178 ~~vG~~~~~~~---l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      +++|.+..+..   |..++....      ...+-++|.+|+||||||+.+.+.
T Consensus        13 d~vGq~~~v~~~~~L~~~i~~~~------~~~ilL~GppGtGKTtLA~~ia~~   59 (413)
T PRK13342         13 EVVGQEHLLGPGKPLRRMIEAGR------LSSMILWGPPGTGKTTLARIIAGA   59 (413)
T ss_pred             HhcCcHHHhCcchHHHHHHHcCC------CceEEEECCCCCCHHHHHHHHHHH
Confidence            57777766544   666664433      456788999999999999998763

>PRK04195 replication factor C large subunit; Provisional

Probab=97.37  E-value=0.00017  Score=62.90  Aligned_cols=49  Identities=33%  Similarity=0.424  Sum_probs=39.7

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .+++|.+..++.|..|+.....  ....+.+-|+|..|+||||||+.+.++
T Consensus        14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~e   62 (482)
T PRK04195         14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALAND   62 (482)
T ss_pred             HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3689999999999999965321  122678899999999999999998764

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=97.35  E-value=0.00018  Score=63.83  Aligned_cols=48  Identities=29%  Similarity=0.448  Sum_probs=37.3

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      +-+|.+..++.|+++|--..-...-+=.+++.||.+|||||.|++.|-
T Consensus       324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA  371 (782)
T COG0466         324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIA  371 (782)
T ss_pred             cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHH
Confidence            568999999999999843221111334799999999999999999874

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=97.32  E-value=0.00029  Score=57.95  Aligned_cols=46  Identities=22%  Similarity=0.190  Sum_probs=38.7

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .+++|.+...+.+..++..+.     -..++-++|..|+||||||+.+++.
T Consensus        21 ~~~~~~~~~~~~l~~~~~~~~-----~~~~lll~G~~G~GKT~la~~l~~~   66 (316)
T PHA02544         21 DECILPAADKETFKSIVKKGR-----IPNMLLHSPSPGTGKTTVAKALCNE   66 (316)
T ss_pred             HHhcCcHHHHHHHHHHHhcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH
Confidence            468999999999999987543     2468888999999999999998763

>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide

Probab=97.31  E-value=0.0013  Score=52.98  Aligned_cols=77  Identities=16%  Similarity=0.201  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhc-ccCcHHHHHHHHHHHHHhhhhhhhhhh
Q 037814            4 AIISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKR-QVKEETVRLWLDQLRDACYDMEDVLGE   82 (229)
Q Consensus         4 ~~v~~~~~~l~~~l~~~l~~~~~~~~~~~~~l~~L~~~l~~i~~~l~~a~~~-~~~~~~~~~wl~~l~~~~yd~eD~lD~   82 (229)
                      +.|..+++++-+.    .......+.-++.+++-++.+|+.++.||+..-.. +..-+....+..++-..||++|-++|-
T Consensus       296 GyVdFlL~NLkdf----q~rysdSlaflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDa  371 (402)
T PF12061_consen  296 GYVDFLLKNLKDF----QGRYSDSLAFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDA  371 (402)
T ss_pred             cHHHHHHhhHHHH----hccccchHHHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeeh
Confidence            3566677777765    44444556778999999999999999999988543 333455999999999999999999998


Q ss_pred             hH
Q 037814           83 WN   84 (229)
Q Consensus        83 ~~   84 (229)
                      +.
T Consensus       372 Ci  373 (402)
T PF12061_consen  372 CI  373 (402)
T ss_pred             hh
Confidence            76

The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.

>CHL00095 clpC Clp protease ATP binding subunit

Probab=97.30  E-value=0.00025  Score=65.74  Aligned_cols=43  Identities=30%  Similarity=0.418  Sum_probs=35.2

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .++||+.+.+.++++|.....     -.+ -+||.+|+|||++|+.+..
T Consensus       180 ~~igr~~ei~~~~~~L~r~~~-----~n~-lL~G~pGvGKTal~~~la~  222 (821)
T CHL00095        180 PVIGREKEIERVIQILGRRTK-----NNP-ILIGEPGVGKTAIAEGLAQ  222 (821)
T ss_pred             CCCCcHHHHHHHHHHHccccc-----CCe-EEECCCCCCHHHHHHHHHH
Confidence            589999999999999975431     233 5999999999999987643

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.27  E-value=0.00022  Score=44.83  Aligned_cols=21  Identities=38%  Similarity=0.539  Sum_probs=18.6

Q ss_pred             EEEEecCCCCcHHHHHHHHhc
Q 037814          206 IISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       206 Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +|.|.|..|+||||+++.+-+
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~   21 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAE   21 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998754

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=97.27  E-value=0.00033  Score=58.06  Aligned_cols=44  Identities=18%  Similarity=0.233  Sum_probs=35.8

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|++..++.|..++..+.      +..+-++|..|+||||||+.+.+
T Consensus        15 ~~~~g~~~~~~~L~~~~~~~~------~~~lll~Gp~GtGKT~la~~~~~   58 (337)
T PRK12402         15 EDILGQDEVVERLSRAVDSPN------LPHLLVQGPPGSGKTAAVRALAR   58 (337)
T ss_pred             HHhcCCHHHHHHHHHHHhCCC------CceEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999886543      34577999999999999988654

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=97.23  E-value=0.00036  Score=64.76  Aligned_cols=43  Identities=26%  Similarity=0.396  Sum_probs=35.5

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .++||+.+...++++|....      ..-+-+||.+|+||||||+.+-+
T Consensus       188 ~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~  230 (852)
T TIGR03345       188 PVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLAL  230 (852)
T ss_pred             cccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHH
Confidence            68999999999999997654      23345999999999999998654

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=97.23  E-value=0.0035  Score=55.94  Aligned_cols=49  Identities=22%  Similarity=0.379  Sum_probs=39.3

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+-+|+++-++.|+++|--..-..+-+=+|++.+|.+|||||.+++.|-
T Consensus       411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA  459 (906)
T KOG2004|consen  411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIA  459 (906)
T ss_pred             ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHH
Confidence            3578999999999999854332223556899999999999999999874

>TIGR00763 lon ATP-dependent protease La

Probab=97.22  E-value=0.0021  Score=59.35  Aligned_cols=49  Identities=27%  Similarity=0.422  Sum_probs=36.6

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +++|.+..++.|.+++....-....+-.++.++|..|+||||||+.+.+
T Consensus       321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~  369 (775)
T TIGR00763       321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAK  369 (775)
T ss_pred             hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHH
Confidence            5889999999999877432100112335899999999999999998864

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=97.21  E-value=0.00032  Score=58.97  Aligned_cols=52  Identities=25%  Similarity=0.255  Sum_probs=37.9

Q ss_pred             CCcceechhhHHHHHHHhhcCCCC-------CCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          176 ESEIFGREKEKNELVNRLLCESSE-------ERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       176 ~~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ..++.|++..++.|.+.+...-.+       .-...+-+-++|.+|+||||||+.+.+.
T Consensus       121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~  179 (364)
T TIGR01242       121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE  179 (364)
T ss_pred             HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence            347899999999998877421100       0012345889999999999999999764

Many proteins may score above the trusted cutoff because an internal

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=97.19  E-value=0.00046  Score=61.86  Aligned_cols=43  Identities=37%  Similarity=0.552  Sum_probs=35.8

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +++|.+..+..+.+.+...      ....+.|+|.+|+||||||+.+++
T Consensus       155 ~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~  197 (615)
T TIGR02903       155 EIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALE  197 (615)
T ss_pred             hceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHH
Confidence            5899999999888877432      245799999999999999999875

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=97.16  E-value=0.00035  Score=55.65  Aligned_cols=49  Identities=33%  Similarity=0.412  Sum_probs=38.5

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|.++-+++|.=++..... ....+--+-++|.+|+||||||..|-|
T Consensus        26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~   74 (332)
T COG2255          26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIAN   74 (332)
T ss_pred             HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHH
Confidence            3689999999988776654321 225588999999999999999998765

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=97.15  E-value=0.00078  Score=54.62  Aligned_cols=23  Identities=43%  Similarity=0.570  Sum_probs=20.6

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHH
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      +...||+|.|..|+||||||+.+
T Consensus        60 ~~p~IIGIaG~~GSGKSTlar~L   82 (290)
T TIGR00554        60 KIPYIISIAGSVAVGKSTTARIL   82 (290)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHH
Confidence            55789999999999999999865

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK10865 protein disaggregation chaperone; Provisional

Probab=97.15  E-value=0.00049  Score=63.99  Aligned_cols=42  Identities=24%  Similarity=0.363  Sum_probs=34.8

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .++||+.+.+.+++.|....      ..-+-+||.+|+||||||+.+-
T Consensus       179 ~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la  220 (857)
T PRK10865        179 PVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLA  220 (857)
T ss_pred             cCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHH
Confidence            58999999999999997654      2334489999999999998764

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=97.14  E-value=0.00055  Score=56.28  Aligned_cols=44  Identities=27%  Similarity=0.252  Sum_probs=36.8

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|++..++.|..++....      ...+-|+|..|+||||+++.+.+
T Consensus        17 ~~~~g~~~~~~~l~~~i~~~~------~~~~ll~G~~G~GKt~~~~~l~~   60 (319)
T PRK00440         17 DEIVGQEEIVERLKSYVKEKN------MPHLLFAGPPGTGKTTAALALAR   60 (319)
T ss_pred             HHhcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHH
Confidence            458999999999999986543      34579999999999999999865

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=97.13  E-value=0.00024  Score=59.46  Aligned_cols=23  Identities=30%  Similarity=0.143  Sum_probs=20.7

Q ss_pred             EEEEEecCCCCcHHHHHHHHhcC
Q 037814          205 RIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .-..|+|.+|+|||||++.||++
T Consensus       170 QR~lIvgppGvGKTTLaK~Ian~  192 (416)
T PRK09376        170 QRGLIVAPPKAGKTVLLQNIANS  192 (416)
T ss_pred             ceEEEeCCCCCChhHHHHHHHHH
Confidence            46789999999999999999985

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=97.13  E-value=0.00053  Score=62.84  Aligned_cols=43  Identities=30%  Similarity=0.337  Sum_probs=35.3

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .++||+.+.+.+++.|....      ..=+-+||.+|+|||+||+.+.+
T Consensus       183 ~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~  225 (731)
T TIGR02639       183 PLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLAL  225 (731)
T ss_pred             cccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHH
Confidence            58999999999999996553      22345999999999999998754

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=97.11  E-value=0.00076  Score=52.60  Aligned_cols=39  Identities=28%  Similarity=0.285  Sum_probs=30.5

Q ss_pred             chhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          182 REKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       182 ~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+..++.+.+|+...      .-..|-|+|..|+||||||+.+++
T Consensus        22 ~~~~~~~l~~~~~~~------~~~~lll~G~~G~GKT~la~~~~~   60 (226)
T TIGR03420        22 NAELLAALRQLAAGK------GDRFLYLWGESGSGKSHLLQAACA   60 (226)
T ss_pred             cHHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHH
Confidence            455677788876432      246888999999999999999875

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=97.08  E-value=0.0011  Score=48.79  Aligned_cols=35  Identities=29%  Similarity=0.442  Sum_probs=29.7

Q ss_pred             hhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          184 KEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       184 ~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ...+.|.++|.        + +++.++|..|||||||+..+..+
T Consensus        24 ~g~~~l~~~l~--------~-k~~vl~G~SGvGKSSLiN~L~~~   58 (161)
T PF03193_consen   24 EGIEELKELLK--------G-KTSVLLGQSGVGKSSLINALLPE   58 (161)
T ss_dssp             TTHHHHHHHHT--------T-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cCHHHHHHHhc--------C-CEEEEECCCCCCHHHHHHHHHhh
Confidence            45788888884        3 69999999999999999998765

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=97.05  E-value=0.00066  Score=61.76  Aligned_cols=44  Identities=30%  Similarity=0.386  Sum_probs=32.6

Q ss_pred             cceechhhHH---HHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          178 EIFGREKEKN---ELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       178 ~~vG~~~~~~---~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      +++|.+..+.   .|.+++..+      .+.-+-++|.+|+||||||+.+.+.
T Consensus        29 d~vGQe~ii~~~~~L~~~i~~~------~~~slLL~GPpGtGKTTLA~aIA~~   75 (725)
T PRK13341         29 EFVGQDHILGEGRLLRRAIKAD------RVGSLILYGPPGVGKTTLARIIANH   75 (725)
T ss_pred             HhcCcHHHhhhhHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence            5788877664   455555443      3456689999999999999998763

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=97.00  E-value=0.00044  Score=58.67  Aligned_cols=51  Identities=25%  Similarity=0.276  Sum_probs=37.3

Q ss_pred             CcceechhhHHHHHHHhhcCCCC-------CCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          177 SEIFGREKEKNELVNRLLCESSE-------ERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      +++.|++..+++|.+.+...-..       .-...+-|-++|.+|+|||+||+.+.+.
T Consensus       131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~  188 (389)
T PRK03992        131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE  188 (389)
T ss_pred             HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH
Confidence            46899999999998876321100       0123456889999999999999999763

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.00  E-value=0.0013  Score=46.97  Aligned_cols=23  Identities=39%  Similarity=0.371  Sum_probs=20.8

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      -.+|.+.|.-|+|||||+|.+.+
T Consensus        22 ~~~i~l~G~lGaGKTtl~~~l~~   44 (133)
T TIGR00150        22 GTVVLLKGDLGAGKTTLVQGLLQ   44 (133)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHH
Confidence            46999999999999999999865

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=96.98  E-value=0.0015  Score=51.05  Aligned_cols=24  Identities=29%  Similarity=0.400  Sum_probs=20.8

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhcC
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ...+-|+|..|+|||+||+.+++.
T Consensus        42 ~~~~~l~G~~G~GKT~La~ai~~~   65 (227)
T PRK08903         42 DRFFYLWGEAGSGRSHLLQALVAD   65 (227)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            356789999999999999998763

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=96.92  E-value=0.00087  Score=61.67  Aligned_cols=49  Identities=31%  Similarity=0.470  Sum_probs=37.9

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +.+|.+..++.|++||......+...-.++.++|..|+||||+++.+..
T Consensus       323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~  371 (784)
T PRK10787        323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAK  371 (784)
T ss_pred             hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999998632111113346899999999999999998764

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=96.92  E-value=0.001  Score=62.08  Aligned_cols=43  Identities=23%  Similarity=0.356  Sum_probs=34.8

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .++||+.+.+.+++.|....      ..-+-+||.+|+|||+||+.+..
T Consensus       174 ~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~  216 (852)
T TIGR03346       174 PVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQ  216 (852)
T ss_pred             cCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHH
Confidence            58999999999999996643      23334899999999999987643

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.88  E-value=0.0016  Score=54.72  Aligned_cols=45  Identities=27%  Similarity=0.365  Sum_probs=36.6

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|-+.-++.+...+..+.-     ...+-++|..|+||||||+.+-+
T Consensus        16 ~~iiGq~~~~~~l~~~~~~~~~-----~h~~L~~Gp~G~GKTtla~~la~   60 (363)
T PRK14961         16 RDIIGQKHIVTAISNGLSLGRI-----HHAWLLSGTRGVGKTTIARLLAK   60 (363)
T ss_pred             hhccChHHHHHHHHHHHHcCCC-----CeEEEEecCCCCCHHHHHHHHHH
Confidence            3689999999999988875432     35678999999999999988753

>PRK09087 hypothetical protein; Validated

Probab=96.87  E-value=0.0024  Score=50.04  Aligned_cols=24  Identities=33%  Similarity=0.423  Sum_probs=21.0

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhcC
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      -..+.|||..|+|||||++.+++.
T Consensus        44 ~~~l~l~G~~GsGKThLl~~~~~~   67 (226)
T PRK09087         44 SPVVVLAGPVGSGKTHLASIWREK   67 (226)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHh
Confidence            367899999999999999988754

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=96.85  E-value=0.0012  Score=55.03  Aligned_cols=44  Identities=27%  Similarity=0.366  Sum_probs=29.8

Q ss_pred             CCCCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          174 IDESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       174 ~~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +.+..++|-+.....+++   .      ..+.-.-.||.+|+||||||+.|-.
T Consensus        27 vGQ~HLlg~~~~lrr~v~---~------~~l~SmIl~GPPG~GKTTlA~liA~   70 (436)
T COG2256          27 VGQEHLLGEGKPLRRAVE---A------GHLHSMILWGPPGTGKTTLARLIAG   70 (436)
T ss_pred             cChHhhhCCCchHHHHHh---c------CCCceeEEECCCCCCHHHHHHHHHH
Confidence            333445555555555553   2      3466667999999999999998743

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=96.84  E-value=0.0014  Score=54.19  Aligned_cols=26  Identities=35%  Similarity=0.364  Sum_probs=22.1

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ..+.-+-.||.+|+||||||+.+-+.
T Consensus       160 ~~ipSmIlWGppG~GKTtlArlia~t  185 (554)
T KOG2028|consen  160 NRIPSMILWGPPGTGKTTLARLIAST  185 (554)
T ss_pred             CCCCceEEecCCCCchHHHHHHHHhh
Confidence            34777889999999999999998654

>CHL00181 cbbX CbbX; Provisional

Probab=96.82  E-value=0.0022  Score=52.11  Aligned_cols=49  Identities=22%  Similarity=0.220  Sum_probs=31.6

Q ss_pred             cceechhhHHHHHHHhh---cC------CCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLL---CE------SSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~---~~------~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +++|.+..+++|.++..   -.      .-.....-..+-++|.+|+||||+|+.+.+
T Consensus        24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~   81 (287)
T CHL00181         24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMAD   81 (287)
T ss_pred             hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence            57888777776655431   11      000012233578899999999999999843

>PLN02318 phosphoribulokinase/uridine kinase

Probab=96.80  E-value=0.0017  Score=57.20  Aligned_cols=25  Identities=28%  Similarity=0.506  Sum_probs=22.5

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ++..+|+|.|..|+||||||+.+..
T Consensus        63 ~~riIIGIaGpSGSGKTTLAk~Lag   87 (656)
T PLN02318         63 DGIILVGVAGPSGAGKTVFTEKVLN   87 (656)
T ss_pred             CCeEEEEEECCCCCcHHHHHHHHHh
Confidence            5589999999999999999999864

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=96.79  E-value=0.0017  Score=59.66  Aligned_cols=51  Identities=25%  Similarity=0.230  Sum_probs=39.1

Q ss_pred             CCCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          175 DESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       175 ~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+..+.||+++.++|...|...-.. ...-.++=|+|.+|.|||+.++.|.+
T Consensus       753 VPD~LPhREeEIeeLasfL~paIkg-sgpnnvLYIyG~PGTGKTATVK~VLr  803 (1164)
T PTZ00112        753 VPKYLPCREKEIKEVHGFLESGIKQ-SGSNQILYISGMPGTGKTATVYSVIQ  803 (1164)
T ss_pred             CCCcCCChHHHHHHHHHHHHHHHhc-CCCCceEEEECCCCCCHHHHHHHHHH
Confidence            3357999999999999988643211 12236778999999999999999864

>PRK05439 pantothenate kinase; Provisional

Probab=96.76  E-value=0.0026  Score=52.05  Aligned_cols=24  Identities=38%  Similarity=0.509  Sum_probs=21.6

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      ...-||+|-|..|+||||||+.+-
T Consensus        84 ~~~~iIgIaG~~gsGKSTla~~L~  107 (311)
T PRK05439         84 KVPFIIGIAGSVAVGKSTTARLLQ  107 (311)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            567899999999999999998864

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.74  E-value=0.0021  Score=55.85  Aligned_cols=45  Identities=31%  Similarity=0.404  Sum_probs=34.9

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|.+.-+..|...+..+.     -...+-++|..|+||||+|+.+-+
T Consensus        14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~   58 (472)
T PRK14962         14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAK   58 (472)
T ss_pred             HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHH
Confidence            368999888788877776543     135678999999999999998743

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.74  E-value=0.0015  Score=44.70  Aligned_cols=22  Identities=36%  Similarity=0.342  Sum_probs=19.5

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      -..++|+|..|+|||||++.+.
T Consensus        15 ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          15 KVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             CEEEEEEcCCCCCHHHHHHHhh
Confidence            3689999999999999999864

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=96.74  E-value=0.0018  Score=59.27  Aligned_cols=43  Identities=33%  Similarity=0.387  Sum_probs=35.2

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .++||+.+++.+++.|.....     ..+ -++|.+|+|||+||+.+.+
T Consensus       187 ~liGR~~ei~~~i~iL~r~~~-----~n~-LLvGppGvGKT~lae~la~  229 (758)
T PRK11034        187 PLIGREKELERAIQVLCRRRK-----NNP-LLVGESGVGKTAIAEGLAW  229 (758)
T ss_pred             cCcCCCHHHHHHHHHHhccCC-----CCe-EEECCCCCCHHHHHHHHHH
Confidence            589999999999999976431     233 4799999999999998764

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=96.71  E-value=0.0032  Score=51.87  Aligned_cols=24  Identities=42%  Similarity=0.556  Sum_probs=20.8

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+..||.++|.+|+||||++..+-
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA  135 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLA  135 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHH
Confidence            346899999999999999998763

>PRK06620 hypothetical protein; Validated

Probab=96.71  E-value=0.0051  Score=47.80  Aligned_cols=52  Identities=17%  Similarity=0.042  Sum_probs=31.8

Q ss_pred             CCCcceechh--hHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcCC
Q 037814          175 DESEIFGREK--EKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNND  228 (229)
Q Consensus       175 ~~~~~vG~~~--~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d~  228 (229)
                      .++-++|-.+  ....+.+|-.....  .+....+-|||..|+|||+|++.+++..
T Consensus        15 fd~Fvvg~~N~~a~~~~~~~~~~~~~--~~~~~~l~l~Gp~G~GKThLl~a~~~~~   68 (214)
T PRK06620         15 PDEFIVSSSNDQAYNIIKNWQCGFGV--NPYKFTLLIKGPSSSGKTYLTKIWQNLS   68 (214)
T ss_pred             chhhEecccHHHHHHHHHHHHHcccc--CCCcceEEEECCCCCCHHHHHHHHHhcc
Confidence            4445677622  34444544321110  0112568999999999999999987653

>cd01878 HflX HflX subfamily

Probab=96.70  E-value=0.0016  Score=50.01  Aligned_cols=26  Identities=31%  Similarity=0.386  Sum_probs=22.5

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ++...|+|+|.+|+|||||.+.+.++
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~   64 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGA   64 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcc
Confidence            34579999999999999999988765

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=96.69  E-value=0.0032  Score=51.05  Aligned_cols=23  Identities=39%  Similarity=0.439  Sum_probs=20.2

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHh
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      +..+|.|+|..|+||||++..+.
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa  215 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLA  215 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            46799999999999999988764

>PRK08084 DNA replication initiation factor; Provisional

Probab=96.69  E-value=0.0038  Score=49.21  Aligned_cols=23  Identities=26%  Similarity=0.287  Sum_probs=20.3

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ...+-|+|..|+|||+|++.+++
T Consensus        45 ~~~l~l~Gp~G~GKThLl~a~~~   67 (235)
T PRK08084         45 SGYIYLWSREGAGRSHLLHAACA   67 (235)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            35788999999999999998875

>cd01858 NGP_1 NGP-1

Probab=96.66  E-value=0.0039  Score=45.85  Aligned_cols=25  Identities=12%  Similarity=0.335  Sum_probs=21.2

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhcCC
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYNND  228 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~d~  228 (229)
                      -..|+++|+.|+||+||...+..++
T Consensus       102 ~~~v~~~G~~nvGKStliN~l~~~~  126 (157)
T cd01858         102 QISVGFIGYPNVGKSSIINTLRSKK  126 (157)
T ss_pred             ceEEEEEeCCCCChHHHHHHHhcCC
Confidence            3568899999999999999987653

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.66  E-value=0.0025  Score=56.17  Aligned_cols=44  Identities=30%  Similarity=0.431  Sum_probs=36.0

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +++|-+..++.|...+..+.     -...+-++|..|+||||||+.+.+
T Consensus        17 diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk   60 (546)
T PRK14957         17 EVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAK   60 (546)
T ss_pred             HhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHH
Confidence            68999999999999886543     235577899999999999998754

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.65  E-value=0.0029  Score=53.30  Aligned_cols=23  Identities=35%  Similarity=0.424  Sum_probs=20.3

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHh
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      +.++|+|+|.+|+||||++..+.
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA  262 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMA  262 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHH
Confidence            45899999999999999998874

>PRK13531 regulatory ATPase RavA; Provisional

Probab=96.65  E-value=0.0023  Score=55.18  Aligned_cols=41  Identities=20%  Similarity=0.203  Sum_probs=35.3

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .++|+++..+.+...+..+.        -|-|.|.+|+||||||+.+-.
T Consensus        21 ~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~   61 (498)
T PRK13531         21 GLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKF   61 (498)
T ss_pred             hccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHH
Confidence            48999999999999887665        466999999999999998754

>PLN02796 D-glycerate 3-kinase

Probab=96.64  E-value=0.0019  Score=53.36  Aligned_cols=25  Identities=32%  Similarity=0.320  Sum_probs=22.2

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ...-+|+|.|..|+|||||++.+..
T Consensus        98 ~~pliIGI~G~sGSGKSTLa~~L~~  122 (347)
T PLN02796         98 IPPLVIGISAPQGCGKTTLVFALVY  122 (347)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHH
Confidence            4568999999999999999998864

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=96.59  E-value=0.0042  Score=53.02  Aligned_cols=23  Identities=35%  Similarity=0.460  Sum_probs=20.1

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHH
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      ....||.+||..|+||||++..+
T Consensus        98 ~~~~vi~lvG~~GvGKTTtaaKL  120 (429)
T TIGR01425        98 GKQNVIMFVGLQGSGKTTTCTKL  120 (429)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHH
Confidence            34689999999999999988776

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=96.59  E-value=0.0037  Score=50.53  Aligned_cols=25  Identities=32%  Similarity=0.371  Sum_probs=22.4

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+..+|.|+|..|+|||||+..+.+
T Consensus       102 ~~~~~v~l~G~pGsGKTTLl~~l~~  126 (290)
T PRK10463        102 RKQLVLNLVSSPGSGKTTLLTETLM  126 (290)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999999987754

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.57  E-value=0.0033  Score=55.09  Aligned_cols=44  Identities=30%  Similarity=0.335  Sum_probs=36.0

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +++|-+.-++.|..++..+.-     ...+-++|..|+||||+|+.+.+
T Consensus        15 dvvGq~~v~~~L~~~i~~~~l-----~ha~Lf~GppGtGKTTlA~~lA~   58 (504)
T PRK14963         15 EVVGQEHVKEVLLAALRQGRL-----GHAYLFSGPRGVGKTTTARLIAM   58 (504)
T ss_pred             HhcChHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHHHH
Confidence            589999989999888876432     35679999999999999998754

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=96.56  E-value=0.002  Score=50.44  Aligned_cols=22  Identities=36%  Similarity=0.549  Sum_probs=20.4

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|.|||||++.+..
T Consensus        37 e~~~i~G~nGsGKSTLl~~i~G   58 (228)
T PRK10584         37 ETIALIGESGSGKSTLLAILAG   58 (228)
T ss_pred             CEEEEECCCCCCHHHHHHHHHc
Confidence            6999999999999999999864

>PLN02200 adenylate kinase family protein

Probab=96.56  E-value=0.0025  Score=50.18  Aligned_cols=25  Identities=32%  Similarity=0.328  Sum_probs=21.4

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +...+|.|+|++|+||||+|+.+-+
T Consensus        41 ~~~~ii~I~G~PGSGKsT~a~~La~   65 (234)
T PLN02200         41 KTPFITFVLGGPGSGKGTQCEKIVE   65 (234)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4467999999999999999998754

>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length

Probab=96.55  E-value=0.0041  Score=51.40  Aligned_cols=52  Identities=31%  Similarity=0.407  Sum_probs=42.1

Q ss_pred             CCCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          175 DESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       175 ~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+.+++|+++..++|++.|....-.....-+|+-++|.-|.|||||+..+-+
T Consensus        59 f~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~  110 (358)
T PF08298_consen   59 FEDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR  110 (358)
T ss_pred             ccccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence            3457999999999999999654322236679999999999999999998743

PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.53  E-value=0.0038  Score=55.81  Aligned_cols=43  Identities=26%  Similarity=0.378  Sum_probs=36.4

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      .+++|.+..++.|..++..+..     ...+-++|..|+||||+|+.+
T Consensus        15 ddVIGQe~vv~~L~~aI~~grl-----~HAyLF~GPpGvGKTTlAriL   57 (702)
T PRK14960         15 NELVGQNHVSRALSSALERGRL-----HHAYLFTGTRGVGKTTIARIL   57 (702)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHH
Confidence            3689999999999999976542     467789999999999999876

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.53  E-value=0.0036  Score=53.31  Aligned_cols=44  Identities=25%  Similarity=0.285  Sum_probs=35.1

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+++|-+.-++.|..++..+..     ..-+-++|..|+||||+|+.+-
T Consensus        16 ~eiiGq~~~~~~L~~~~~~~~~-----~ha~lf~Gp~G~GKtt~A~~~a   59 (397)
T PRK14955         16 ADITAQEHITRTIQNSLRMGRV-----GHGYIFSGLRGVGKTTAARVFA   59 (397)
T ss_pred             hhccChHHHHHHHHHHHHhCCc-----ceeEEEECCCCCCHHHHHHHHH
Confidence            3689999999999998875432     3457789999999999998753

>PRK08727 hypothetical protein; Validated

Probab=96.52  E-value=0.0059  Score=48.07  Aligned_cols=22  Identities=36%  Similarity=0.380  Sum_probs=19.7

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .-+-|+|..|+|||+|++.+++
T Consensus        42 ~~l~l~G~~G~GKThL~~a~~~   63 (233)
T PRK08727         42 DWLYLSGPAGTGKTHLALALCA   63 (233)
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4599999999999999999865

>PRK06893 DNA replication initiation factor; Validated

Probab=96.50  E-value=0.0068  Score=47.60  Aligned_cols=23  Identities=22%  Similarity=0.236  Sum_probs=20.6

Q ss_pred             EEEEEecCCCCcHHHHHHHHhcC
Q 037814          205 RIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ..+-|||..|+|||+|++.+++.
T Consensus        40 ~~l~l~G~~G~GKThL~~ai~~~   62 (229)
T PRK06893         40 PFFYIWGGKSSGKSHLLKAVSNH   62 (229)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            56889999999999999999863

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=96.48  E-value=0.0046  Score=51.70  Aligned_cols=44  Identities=23%  Similarity=0.317  Sum_probs=36.2

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+++|.+..++.|.+++..+..     ...+-++|..|+||||+|+.+-
T Consensus        14 ~~iig~~~~~~~l~~~~~~~~~-----~~~~Ll~G~~G~GKt~~a~~la   57 (355)
T TIGR02397        14 EDVIGQEHIVQTLKNAIKNGRI-----AHAYLFSGPRGTGKTSIARIFA   57 (355)
T ss_pred             hhccCcHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHHH
Confidence            3689999999999999975532     3577899999999999997763

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.47  E-value=0.0044  Score=53.14  Aligned_cols=21  Identities=38%  Similarity=0.517  Sum_probs=18.1

Q ss_pred             CEEEEEecCCCCcHHHHHHHH
Q 037814          204 PRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      -.++.++|.+|+||||++..+
T Consensus       221 ~~~i~~vGptGvGKTTt~~kL  241 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKL  241 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHH
Confidence            469999999999999977664

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=96.47  E-value=0.0025  Score=50.12  Aligned_cols=22  Identities=32%  Similarity=0.578  Sum_probs=20.3

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||++.+..
T Consensus        36 e~~~l~G~nGsGKSTLl~~l~G   57 (233)
T PRK11629         36 EMMAIVGSSGSGKSTLLHLLGG   57 (233)
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            5999999999999999999864

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.46  E-value=0.004  Score=53.82  Aligned_cols=45  Identities=22%  Similarity=0.308  Sum_probs=36.2

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|-+.-+..|..++..+.-     ...+-++|..|+||||+|+.+-+
T Consensus        18 ~dvVGQe~iv~~L~~~i~~~ri-----~ha~Lf~GP~GtGKTTlAriLAk   62 (484)
T PRK14956         18 RDVIHQDLAIGALQNALKSGKI-----GHAYIFFGPRGVGKTTIARILAK   62 (484)
T ss_pred             HHHhChHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999998876541     24578999999999999998743

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=96.46  E-value=0.0023  Score=54.41  Aligned_cols=25  Identities=28%  Similarity=0.258  Sum_probs=22.1

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .-.+.|+|+|..|+|||||++.+.+
T Consensus       217 ~~~~~IvI~G~~gsGKTTL~~~La~  241 (399)
T PRK08099        217 FFVRTVAILGGESSGKSTLVNKLAN  241 (399)
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence            4588999999999999999998764

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=96.45  E-value=0.0033  Score=50.68  Aligned_cols=23  Identities=39%  Similarity=0.642  Sum_probs=19.8

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHH
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      .+.++|.++|.+|+||||++..+
T Consensus        70 ~~~~vi~l~G~~G~GKTTt~akL   92 (272)
T TIGR00064        70 NKPNVILFVGVNGVGKTTTIAKL   92 (272)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHH
Confidence            44689999999999999987765

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PLN02348 phosphoribulokinase

Probab=96.45  E-value=0.0032  Score=52.91  Aligned_cols=25  Identities=28%  Similarity=0.420  Sum_probs=22.2

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +..-+|+|.|-.|+||||||+.+.+
T Consensus        47 ~~p~IIGIaG~SGSGKSTfA~~L~~   71 (395)
T PLN02348         47 DGTVVIGLAADSGCGKSTFMRRLTS   71 (395)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999999998764

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=96.45  E-value=0.0081  Score=42.25  Aligned_cols=44  Identities=25%  Similarity=0.484  Sum_probs=31.6

Q ss_pred             cceechhhHHHHHH----HhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814          178 EIFGREKEKNELVN----RLLCESSEERKGPRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       178 ~~vG~~~~~~~l~~----~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      .++|-+-..+.|++    .|.+..   +++.-|++..|..|+|||.+++.|
T Consensus        26 ~l~GQhla~~~v~~ai~~~l~~~~---p~KpLVlSfHG~tGtGKn~v~~li   73 (127)
T PF06309_consen   26 NLFGQHLAVEVVVNAIKGHLANPN---PRKPLVLSFHGWTGTGKNFVSRLI   73 (127)
T ss_pred             HccCcHHHHHHHHHHHHHHHcCCC---CCCCEEEEeecCCCCcHHHHHHHH
Confidence            46776555554444    444333   478899999999999999987765

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>PRK10536 hypothetical protein; Provisional

Probab=96.43  E-value=0.0054  Score=48.69  Aligned_cols=40  Identities=20%  Similarity=0.336  Sum_probs=32.8

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+.++......++.+|.+.        .++.+.|..|+|||+||..+-
T Consensus        56 ~i~p~n~~Q~~~l~al~~~--------~lV~i~G~aGTGKT~La~a~a   95 (262)
T PRK10536         56 PILARNEAQAHYLKAIESK--------QLIFATGEAGCGKTWISAAKA   95 (262)
T ss_pred             cccCCCHHHHHHHHHHhcC--------CeEEEECCCCCCHHHHHHHHH
Confidence            4677888888889888542        499999999999999998743

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=96.42  E-value=0.003  Score=50.63  Aligned_cols=25  Identities=32%  Similarity=0.307  Sum_probs=20.7

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +...-+-++|.+|+||||+|+.+.+
T Consensus        40 ~~~~~vll~GppGtGKTtlA~~ia~   64 (261)
T TIGR02881        40 KQVLHMIFKGNPGTGKTTVARILGK   64 (261)
T ss_pred             CCcceEEEEcCCCCCHHHHHHHHHH
Confidence            3356678999999999999998853

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=96.41  E-value=0.0038  Score=51.95  Aligned_cols=48  Identities=21%  Similarity=0.235  Sum_probs=37.4

Q ss_pred             CCCCCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          173 SIDESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       173 ~~~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .++-+.++|-+..+..|+-.+.+      +++.-|-|.|-.|+||||+|+.+|+
T Consensus        13 ~~pf~~ivGq~~~k~al~~~~~~------p~~~~vli~G~~GtGKs~~ar~~~~   60 (350)
T CHL00081         13 VFPFTAIVGQEEMKLALILNVID------PKIGGVMIMGDRGTGKSTTIRALVD   60 (350)
T ss_pred             CCCHHHHhChHHHHHHHHHhccC------CCCCeEEEEcCCCCCHHHHHHHHHH
Confidence            44556799999888888776654      3355566999999999999999864

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=96.41  E-value=0.0053  Score=50.80  Aligned_cols=23  Identities=26%  Similarity=0.460  Sum_probs=20.5

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHH
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      .+..+|+|.|.+|+|||||+..+
T Consensus        54 ~~~~~igi~G~~GaGKSTl~~~l   76 (332)
T PRK09435         54 GNALRIGITGVPGVGKSTFIEAL   76 (332)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHH
Confidence            45689999999999999999875

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.38  E-value=0.0051  Score=56.80  Aligned_cols=45  Identities=24%  Similarity=0.372  Sum_probs=36.8

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+|+|-+.-++.|..++..+.-     ...+-++|..|+||||+|+.+.+
T Consensus        16 ddIIGQe~Iv~~LknaI~~~rl-----~HAyLFtGPpGtGKTTLARiLAk   60 (944)
T PRK14949         16 EQMVGQSHVLHALTNALTQQRL-----HHAYLFTGTRGVGKTSLARLFAK   60 (944)
T ss_pred             HHhcCcHHHHHHHHHHHHhCCC-----CeEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999998876532     34567999999999999998764

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=96.36  E-value=0.0049  Score=54.70  Aligned_cols=43  Identities=35%  Similarity=0.473  Sum_probs=35.5

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      .+++|.+.-++.+..++..+.-     ..-+-++|..|+||||+|+.+
T Consensus        16 ~dIIGQe~iv~~L~~aI~~~rl-----~hA~Lf~GP~GvGKTTlA~~l   58 (605)
T PRK05896         16 KQIIGQELIKKILVNAILNNKL-----THAYIFSGPRGIGKTSIAKIF   58 (605)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCC-----CceEEEECCCCCCHHHHHHHH
Confidence            3689999999999998865432     356779999999999999886

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.35  E-value=0.0029  Score=50.21  Aligned_cols=22  Identities=36%  Similarity=0.611  Sum_probs=20.0

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      -.+++|||-.|+|||||++.|-
T Consensus        39 ge~~glVGESG~GKSTlgr~i~   60 (268)
T COG4608          39 GETLGLVGESGCGKSTLGRLIL   60 (268)
T ss_pred             CCEEEEEecCCCCHHHHHHHHH
Confidence            4699999999999999999874

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=96.35  E-value=0.0032  Score=50.36  Aligned_cols=22  Identities=32%  Similarity=0.604  Sum_probs=20.2

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||++.+..
T Consensus        39 e~~~I~G~NGsGKSTLlk~l~G   60 (257)
T PRK11247         39 QFVAVVGRSGCGKSTLLRLLAG   60 (257)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            6999999999999999999864

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=96.34  E-value=0.0048  Score=52.98  Aligned_cols=51  Identities=29%  Similarity=0.331  Sum_probs=36.2

Q ss_pred             CcceechhhHHHHHHHhhcCCCC-------CCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          177 SEIFGREKEKNELVNRLLCESSE-------ERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .++.|.+..++.|.+.+.-.-.+       .-....-+-++|..|+|||+||+.|.+.
T Consensus       183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e  240 (438)
T PTZ00361        183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE  240 (438)
T ss_pred             HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            36789999999888876321000       0122345779999999999999999764

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=96.33  E-value=0.0064  Score=51.09  Aligned_cols=47  Identities=32%  Similarity=0.373  Sum_probs=35.8

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+.+|+.+.+++...|..--.++ ... -+-|+|..|+|||+.++.|.+
T Consensus        18 ~l~~Re~ei~~l~~~l~~~~~~~-~p~-n~~iyG~~GTGKT~~~~~v~~   64 (366)
T COG1474          18 ELPHREEEINQLASFLAPALRGE-RPS-NIIIYGPTGTGKTATVKFVME   64 (366)
T ss_pred             cccccHHHHHHHHHHHHHHhcCC-CCc-cEEEECCCCCCHhHHHHHHHH
Confidence            49999999999998875432111 112 288999999999999999875

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=96.31  E-value=0.0051  Score=52.28  Aligned_cols=51  Identities=31%  Similarity=0.352  Sum_probs=36.4

Q ss_pred             CcceechhhHHHHHHHhhcC--CCC-----CCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          177 SEIFGREKEKNELVNRLLCE--SSE-----ERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~--~~~-----~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .++.|.+..++.|.+.+.-.  ..+     .-+..+-|-++|.+|+|||+||+.+.+.
T Consensus       145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~  202 (398)
T PTZ00454        145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH  202 (398)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence            46889999999888765311  000     0123466889999999999999998764

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=96.31  E-value=0.0034  Score=49.45  Aligned_cols=22  Identities=32%  Similarity=0.539  Sum_probs=20.3

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|.|||||++.+..
T Consensus        48 e~~~i~G~NGsGKSTLl~~i~G   69 (236)
T cd03267          48 EIVGFIGPNGAGKTTTLKILSG   69 (236)
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            6999999999999999999864

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=96.31  E-value=0.0036  Score=45.39  Aligned_cols=22  Identities=41%  Similarity=0.572  Sum_probs=20.1

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|.|||||++.+..
T Consensus        27 e~~~i~G~nGsGKStLl~~l~G   48 (144)
T cd03221          27 DRIGLVGRNGAGKSTLLKLIAG   48 (144)
T ss_pred             CEEEEECCCCCCHHHHHHHHcC
Confidence            6999999999999999998764

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.31  E-value=0.0059  Score=54.59  Aligned_cols=44  Identities=25%  Similarity=0.363  Sum_probs=36.5

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .++||-+.-++.|.+++..+.-     -..+-++|..|+||||||+.+-
T Consensus        16 ddVIGQe~vv~~L~~al~~gRL-----pHA~LFtGP~GvGKTTLAriLA   59 (700)
T PRK12323         16 TTLVGQEHVVRALTHALEQQRL-----HHAYLFTGTRGVGKTTLSRILA   59 (700)
T ss_pred             HHHcCcHHHHHHHHHHHHhCCC-----ceEEEEECCCCCCHHHHHHHHH
Confidence            3689999999999999976542     3567889999999999998864

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=96.29  E-value=0.0059  Score=54.96  Aligned_cols=44  Identities=30%  Similarity=0.376  Sum_probs=36.6

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+++|.+..+..|..++..+.-     ..-+-++|..|+||||+|+.+-
T Consensus        16 ddIIGQe~vv~~L~~ai~~~rl-----~Ha~Lf~GP~GvGKTTlAriLA   59 (709)
T PRK08691         16 ADLVGQEHVVKALQNALDEGRL-----HHAYLLTGTRGVGKTTIARILA   59 (709)
T ss_pred             HHHcCcHHHHHHHHHHHHcCCC-----CeEEEEECCCCCcHHHHHHHHH
Confidence            3689999999999999876532     3568899999999999998764

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.28  E-value=0.0057  Score=53.67  Aligned_cols=44  Identities=25%  Similarity=0.335  Sum_probs=36.0

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+++|-+.-++.|..++..+.-     ...+-++|..|+||||+|+.+-
T Consensus        16 ~divGq~~v~~~L~~~~~~~~l-----~ha~Lf~Gp~G~GKTt~A~~lA   59 (509)
T PRK14958         16 QEVIGQAPVVRALSNALDQQYL-----HHAYLFTGTRGVGKTTISRILA   59 (509)
T ss_pred             HHhcCCHHHHHHHHHHHHhCCC-----CeeEEEECCCCCCHHHHHHHHH
Confidence            3689999999999999976542     3457799999999999998764

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.25  E-value=0.0039  Score=49.86  Aligned_cols=21  Identities=24%  Similarity=0.504  Sum_probs=19.6

Q ss_pred             EEEEEecCCCCcHHHHHHHHh
Q 037814          205 RIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+++|+|..|.|||||++.+.
T Consensus        39 e~~~l~G~nGsGKSTLl~~l~   59 (259)
T PRK14274         39 EVTAIIGPSGCGKSTFIKTLN   59 (259)
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            589999999999999999985

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.25  E-value=0.0072  Score=50.90  Aligned_cols=45  Identities=24%  Similarity=0.400  Sum_probs=36.8

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|.+...+.+.+++..+.-     ...+-++|..|+||||+|+.+-+
T Consensus        17 ~~iig~~~~~~~l~~~i~~~~~-----~~~~L~~G~~G~GKt~~a~~la~   61 (367)
T PRK14970         17 DDVVGQSHITNTLLNAIENNHL-----AQALLFCGPRGVGKTTCARILAR   61 (367)
T ss_pred             HhcCCcHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999875432     35888999999999999987643

>TIGR00602 rad24 checkpoint protein rad24

Probab=96.24  E-value=0.0067  Score=54.44  Aligned_cols=50  Identities=24%  Similarity=0.304  Sum_probs=39.2

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .+++|-+..+..|..||....-. ...-.++.|+|..|+||||+++.+.+.
T Consensus        84 del~~~~~ki~~l~~~l~~~~~~-~~~~~illL~GP~GsGKTTl~~~la~~  133 (637)
T TIGR00602        84 HELAVHKKKIEEVETWLKAQVLE-NAPKRILLITGPSGCGKSTTIKILSKE  133 (637)
T ss_pred             HHhcCcHHHHHHHHHHHHhcccc-cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999998754321 123468999999999999999998753

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=96.24  E-value=0.0051  Score=52.16  Aligned_cols=24  Identities=33%  Similarity=0.318  Sum_probs=21.5

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      ...-||+|.|..|+|||||++.+.
T Consensus       210 ~~PlIIGIsG~qGSGKSTLa~~L~  233 (460)
T PLN03046        210 IPPLVIGFSAPQGCGKTTLVFALD  233 (460)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            456899999999999999999884

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=96.24  E-value=0.0037  Score=50.17  Aligned_cols=22  Identities=32%  Similarity=0.576  Sum_probs=20.3

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|.|||||++.+..
T Consensus        38 e~~~i~G~nGsGKSTLl~~l~G   59 (265)
T PRK10575         38 KVTGLIGHNGSGKSTLLKMLGR   59 (265)
T ss_pred             CEEEEECCCCCCHHHHHHHHcC
Confidence            6999999999999999998864

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=96.23  E-value=0.0045  Score=50.26  Aligned_cols=47  Identities=26%  Similarity=0.240  Sum_probs=29.0

Q ss_pred             cceechhhHHHHHHHhhc---CC------CCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814          178 EIFGREKEKNELVNRLLC---ES------SEERKGPRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~---~~------~~~~~~~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      +++|.+..+++|.++..-   ..      -.......-+-++|.+|+||||+|+.+
T Consensus        23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~i   78 (284)
T TIGR02880        23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRM   78 (284)
T ss_pred             hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHH
Confidence            478887777776554221   00      000012235779999999999999654

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=96.23  E-value=0.004  Score=49.81  Aligned_cols=21  Identities=29%  Similarity=0.517  Sum_probs=19.8

Q ss_pred             EEEEEecCCCCcHHHHHHHHh
Q 037814          205 RIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+++|+|..|.|||||++.+.
T Consensus        40 e~~~i~G~nGsGKSTLl~~l~   60 (260)
T PRK10744         40 QVTAFIGPSGCGKSTLLRTFN   60 (260)
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            699999999999999999986

>PRK05642 DNA replication initiation factor; Validated

Probab=96.22  E-value=0.013  Score=46.08  Aligned_cols=23  Identities=35%  Similarity=0.482  Sum_probs=20.4

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ...+-|+|..|+|||.|++.+++
T Consensus        45 ~~~l~l~G~~G~GKTHLl~a~~~   67 (234)
T PRK05642         45 ESLIYLWGKDGVGRSHLLQAACL   67 (234)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            36788999999999999999875

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=96.22  E-value=0.0041  Score=50.08  Aligned_cols=22  Identities=32%  Similarity=0.588  Sum_probs=20.2

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||++.+..
T Consensus        51 e~~~l~G~nGsGKSTLl~~L~G   72 (269)
T cd03294          51 EIFVIMGLSGSGKSTLLRCINR   72 (269)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            6999999999999999998864

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14974 cell division protein FtsY; Provisional

Probab=96.22  E-value=0.0049  Score=51.13  Aligned_cols=23  Identities=39%  Similarity=0.528  Sum_probs=19.2

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHh
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      +..+|.++|+.|+||||++..+.
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA  161 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLA  161 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHH
Confidence            46899999999999999666543

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=96.21  E-value=0.009  Score=53.15  Aligned_cols=25  Identities=28%  Similarity=0.392  Sum_probs=21.6

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +.-.+|-|+|+.|+||||+|+.+..
T Consensus       390 ~~g~~Ivl~Gl~GSGKSTia~~La~  414 (568)
T PRK05537        390 KQGFTVFFTGLSGAGKSTIAKALMV  414 (568)
T ss_pred             CCCeEEEEECCCCChHHHHHHHHHH
Confidence            4556899999999999999999864

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=96.21  E-value=0.004  Score=50.15  Aligned_cols=22  Identities=23%  Similarity=0.455  Sum_probs=20.2

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|.|||||++.+..
T Consensus        51 e~~~I~G~nGsGKSTLl~~i~G   72 (271)
T PRK14238         51 EVTAIIGPSGCGKSTYIKTLNR   72 (271)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            6999999999999999999863

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.19  E-value=0.007  Score=54.17  Aligned_cols=43  Identities=30%  Similarity=0.438  Sum_probs=35.7

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      ++++|-+.-+..|..++..+.-     ...+-++|..|+||||+|+.+
T Consensus        16 ~dviGQe~vv~~L~~~l~~~rl-----~ha~Lf~Gp~GvGKTtlAr~l   58 (618)
T PRK14951         16 SEMVGQEHVVQALTNALTQQRL-----HHAYLFTGTRGVGKTTVSRIL   58 (618)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHH
Confidence            3689999889999998876542     356789999999999999987

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=96.19  E-value=0.0044  Score=49.83  Aligned_cols=22  Identities=23%  Similarity=0.480  Sum_probs=20.2

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||++.+..
T Consensus        46 e~~~i~G~nGsGKSTLl~~l~G   67 (267)
T PRK14235         46 TVTAFIGPSGCGKSTFLRCLNR   67 (267)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            6899999999999999999864

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.18  E-value=0.0042  Score=50.51  Aligned_cols=22  Identities=27%  Similarity=0.607  Sum_probs=20.1

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|.|||||++.+..
T Consensus        38 e~~~l~G~nGsGKSTLl~~l~G   59 (289)
T PRK13645         38 KVTCVIGTTGSGKSTMIQLTNG   59 (289)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            6999999999999999998853

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=96.18  E-value=0.0044  Score=49.73  Aligned_cols=21  Identities=29%  Similarity=0.534  Sum_probs=19.9

Q ss_pred             EEEEEecCCCCcHHHHHHHHh
Q 037814          205 RIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+++|+|..|.|||||++.+.
T Consensus        37 e~~~i~G~nGsGKSTLl~~l~   57 (264)
T PRK14243         37 QITAFIGPSGCGKSTILRCFN   57 (264)
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            699999999999999999986

>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein

Probab=96.18  E-value=0.0096  Score=49.22  Aligned_cols=23  Identities=30%  Similarity=0.517  Sum_probs=19.4

Q ss_pred             CCCEEEEEecC-CCCcHHHHHHHH
Q 037814          202 KGPRIISLVGM-GGIGKTTLAQFA  224 (229)
Q Consensus       202 ~~~~Vi~IvG~-gGvGKTTLa~~v  224 (229)
                      ..-+||+|+|. ||+||||+|-.+
T Consensus        91 ~~~~vIav~~~KGGvGkTT~a~nL  114 (322)
T TIGR03815        91 ARGVVVAVIGGRGGAGASTLAAAL  114 (322)
T ss_pred             CCceEEEEEcCCCCCcHHHHHHHH
Confidence            45799999985 999999998654

Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.18  E-value=0.0072  Score=53.33  Aligned_cols=43  Identities=35%  Similarity=0.452  Sum_probs=35.4

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      .+++|-+.-++.|..++..+.-     ...+-++|..|+||||+|+.+
T Consensus        16 ~divGq~~v~~~L~~~i~~~~~-----~ha~Lf~Gp~G~GKTt~A~~l   58 (527)
T PRK14969         16 SELVGQEHVVRALTNALEQQRL-----HHAYLFTGTRGVGKTTLARIL   58 (527)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCC-----CEEEEEECCCCCCHHHHHHHH
Confidence            3689999999999999876542     345679999999999999886

>PLN02165 adenylate isopentenyltransferase

Probab=96.17  E-value=0.0048  Score=50.80  Aligned_cols=23  Identities=22%  Similarity=0.414  Sum_probs=20.2

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      -.+|.|+|+.|+||||||..+..
T Consensus        43 g~iivIiGPTGSGKStLA~~LA~   65 (334)
T PLN02165         43 DKVVVIMGATGSGKSRLSVDLAT   65 (334)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHH
Confidence            35999999999999999998754

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=96.16  E-value=0.0077  Score=54.72  Aligned_cols=44  Identities=25%  Similarity=0.329  Sum_probs=35.3

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+++|.+..++.|..+|..+.-     -..+-++|..|+||||+|+.+-
T Consensus        16 dEVIGQe~Vv~~L~~aL~~gRL-----~HAyLFtGPpGvGKTTlAriLA   59 (830)
T PRK07003         16 ASLVGQEHVVRALTHALDGGRL-----HHAYLFTGTRGVGKTTLSRIFA   59 (830)
T ss_pred             HHHcCcHHHHHHHHHHHhcCCC-----CeEEEEECCCCCCHHHHHHHHH
Confidence            3689999999999999875542     3455699999999999998654

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.15  E-value=0.0046  Score=49.78  Aligned_cols=22  Identities=27%  Similarity=0.520  Sum_probs=20.3

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||++.+..
T Consensus        40 e~~~l~G~nGsGKSTLl~~l~G   61 (269)
T PRK14259         40 KVTALIGPSGCGKSTVLRSLNR   61 (269)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            6999999999999999999864

>PRK10867 signal recognition particle protein; Provisional

Probab=96.14  E-value=0.01  Score=50.85  Aligned_cols=23  Identities=48%  Similarity=0.660  Sum_probs=18.8

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHH
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      ....||.++|.+|+||||.+-.+
T Consensus        98 ~~p~vI~~vG~~GsGKTTtaakL  120 (433)
T PRK10867         98 KPPTVIMMVGLQGAGKTTTAGKL  120 (433)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHH
Confidence            44789999999999999955443

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=96.14  E-value=0.0047  Score=48.28  Aligned_cols=22  Identities=36%  Similarity=0.572  Sum_probs=20.2

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||++.+..
T Consensus        49 e~~~i~G~nGsGKSTLl~~l~G   70 (224)
T cd03220          49 ERIGLIGRNGAGKSTLLRLLAG   70 (224)
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            6899999999999999998864

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.14  E-value=0.0045  Score=49.73  Aligned_cols=22  Identities=27%  Similarity=0.480  Sum_probs=20.0

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|.|||||++.+..
T Consensus        48 e~~~i~G~nGsGKSTLl~~l~G   69 (268)
T PRK14248         48 AVTALIGPSGCGKSTFLRSINR   69 (268)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            5899999999999999999853

>TIGR03689 pup_AAA proteasome ATPase

Probab=96.13  E-value=0.0066  Score=53.06  Aligned_cols=51  Identities=24%  Similarity=0.294  Sum_probs=36.3

Q ss_pred             CcceechhhHHHHHHHhhcCCCC-------CCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          177 SEIFGREKEKNELVNRLLCESSE-------ERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .++.|.+..+++|.+.+.-.--+       .-+..+-|-++|.+|+|||+||+.+++.
T Consensus       182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e  239 (512)
T TIGR03689       182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS  239 (512)
T ss_pred             HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence            45788999999988875321000       0122445789999999999999999874

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>TIGR00767 rho transcription termination factor Rho

Probab=96.13  E-value=0.004  Score=52.50  Aligned_cols=23  Identities=26%  Similarity=0.078  Sum_probs=21.2

Q ss_pred             EEEEEecCCCCcHHHHHHHHhcC
Q 037814          205 RIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ..++|||.+|+|||||++.+++.
T Consensus       169 q~~~IvG~~g~GKTtL~~~i~~~  191 (415)
T TIGR00767       169 QRGLIVAPPKAGKTVLLQKIAQA  191 (415)
T ss_pred             CEEEEECCCCCChhHHHHHHHHh
Confidence            57899999999999999999885

Members of this family differ in the specificity of RNA binding.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.11  E-value=0.005  Score=47.72  Aligned_cols=22  Identities=32%  Similarity=0.404  Sum_probs=20.2

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|.|||||++.+..
T Consensus        38 e~~~i~G~nGsGKSTLl~~i~G   59 (214)
T PRK13543         38 EALLVQGDNGAGKTTLLRVLAG   59 (214)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhC
Confidence            6899999999999999999864

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.11  E-value=0.0049  Score=49.73  Aligned_cols=21  Identities=38%  Similarity=0.645  Sum_probs=19.9

Q ss_pred             EEEEEecCCCCcHHHHHHHHh
Q 037814          205 RIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+++|+|..|.|||||++.+.
T Consensus        47 e~~~IiG~nGsGKSTLl~~l~   67 (274)
T PRK14265         47 KIIAFIGPSGCGKSTLLRCFN   67 (274)
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            589999999999999999987

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=96.10  E-value=0.0051  Score=49.44  Aligned_cols=22  Identities=32%  Similarity=0.496  Sum_probs=20.3

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||++.+..
T Consensus        47 e~~~I~G~nGsGKSTLl~~l~G   68 (267)
T PRK14237         47 KITALIGPSGSGKSTYLRSLNR   68 (267)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            5999999999999999999874

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.10  E-value=0.005  Score=49.59  Aligned_cols=22  Identities=23%  Similarity=0.554  Sum_probs=20.1

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||.+.+..
T Consensus        36 e~~~l~G~nGsGKSTLl~~l~G   57 (271)
T PRK13632         36 EYVAILGHNGSGKSTISKILTG   57 (271)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            6999999999999999998764

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=96.09  E-value=0.005  Score=49.42  Aligned_cols=22  Identities=41%  Similarity=0.684  Sum_probs=20.2

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|.|||||++.+..
T Consensus        51 e~~~liG~NGsGKSTLlk~L~G   72 (264)
T PRK13546         51 DVIGLVGINGSGKSTLSNIIGG   72 (264)
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            5999999999999999999864

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=96.09  E-value=0.0083  Score=47.51  Aligned_cols=53  Identities=23%  Similarity=0.322  Sum_probs=40.4

Q ss_pred             CcceechhhHH---HHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcCCC
Q 037814          177 SEIFGREKEKN---ELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNNDD  229 (229)
Q Consensus       177 ~~~vG~~~~~~---~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d~~  229 (229)
                      ++++|-++.+.   -|+++|.+.+.=..+..+-|-.+|..|.|||-+|+.+-|..+
T Consensus       121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k  176 (368)
T COG1223         121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK  176 (368)
T ss_pred             hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC
Confidence            46899877665   467888665422346678888999999999999999987653

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

Probab=96.08  E-value=0.0088  Score=50.38  Aligned_cols=41  Identities=24%  Similarity=0.322  Sum_probs=27.9

Q ss_pred             hhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          183 EKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       183 ~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .++.+++..++....   ....++|+|+|..|+|||||+..+..
T Consensus       187 peDl~~l~~~~~~~~---~~~~~~~~~~g~~~~GKtt~~~~l~~  227 (366)
T PRK14489        187 PEDLEQLRAIPDGTT---TGAPPLLGVVGYSGTGKTTLLEKLIP  227 (366)
T ss_pred             HHHHHHHhhhhhccc---CCCccEEEEecCCCCCHHHHHHHHHH
Confidence            344555555432211   12467999999999999999988764

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=96.05  E-value=0.005  Score=53.70  Aligned_cols=21  Identities=43%  Similarity=0.627  Sum_probs=19.2

Q ss_pred             EEEEEecCCCCcHHHHHHHHh
Q 037814          205 RIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+++|||-.|+||||||+.+-
T Consensus       318 E~lglVGeSGsGKSTlar~i~  338 (539)
T COG1123         318 ETLGLVGESGSGKSTLARILA  338 (539)
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            589999999999999999873

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.04  E-value=0.0051  Score=51.66  Aligned_cols=22  Identities=32%  Similarity=0.428  Sum_probs=19.5

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      -.++.++|..|+||||++.++-
T Consensus       137 g~ii~lvGptGvGKTTtiakLA  158 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLA  158 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3699999999999999998863

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=96.03  E-value=0.01  Score=50.50  Aligned_cols=49  Identities=24%  Similarity=0.377  Sum_probs=35.2

Q ss_pred             CcceechhhHHHHHHHhhcC--------CCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          177 SEIFGREKEKNELVNRLLCE--------SSEERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~--------~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      ..++|.+..++.+..++...        .........-|-++|..|+||||||+.+-
T Consensus        15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LA   71 (443)
T PRK05201         15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLA   71 (443)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHH
Confidence            35899999999988877541        10000113678899999999999999764

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=96.03  E-value=0.012  Score=50.49  Aligned_cols=24  Identities=46%  Similarity=0.522  Sum_probs=20.9

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      ....+|.++|..|+||||++..+.
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA  116 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLA  116 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHH
Confidence            347899999999999999998764

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.03  E-value=0.009  Score=52.03  Aligned_cols=44  Identities=32%  Similarity=0.453  Sum_probs=34.7

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+++|-+.-++.|...+..+.-     ..-+-++|..|+||||+|+.+-
T Consensus        13 ~dliGQe~vv~~L~~a~~~~ri-----~ha~Lf~Gp~G~GKTT~ArilA   56 (491)
T PRK14964         13 KDLVGQDVLVRILRNAFTLNKI-----PQSILLVGASGVGKTTCARIIS   56 (491)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCC-----CceEEEECCCCccHHHHHHHHH
Confidence            3689999888888887765431     2467899999999999998763

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=96.02  E-value=0.006  Score=47.66  Aligned_cols=23  Identities=35%  Similarity=0.531  Sum_probs=20.5

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      =.+++|+|..|.|||||++.+.-
T Consensus        40 Ge~~~i~G~nGsGKSTLl~~l~G   62 (226)
T cd03248          40 GEVTALVGPSGSGKSTVVALLEN   62 (226)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            36999999999999999998864

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.01  E-value=0.0058  Score=51.92  Aligned_cols=22  Identities=32%  Similarity=0.357  Sum_probs=19.8

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      ..+|.|+|.+|+||||++.++-
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA  244 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLA  244 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            5799999999999999998864

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=96.01  E-value=0.0059  Score=49.63  Aligned_cols=22  Identities=23%  Similarity=0.451  Sum_probs=20.3

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|.|||||.+.+.-
T Consensus        66 e~~~l~G~nGsGKSTLl~~L~G   87 (286)
T PRK14275         66 YVTAIIGPSGCGKSTFLRAINR   87 (286)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            6999999999999999999864

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.00  E-value=0.01  Score=51.96  Aligned_cols=23  Identities=39%  Similarity=0.388  Sum_probs=20.0

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHh
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .-.+|+|+|.+|+||||++..+.
T Consensus       349 ~G~vIaLVGPtGvGKTTtaakLA  371 (559)
T PRK12727        349 RGGVIALVGPTGAGKTTTIAKLA  371 (559)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHH
Confidence            35899999999999999997764

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=96.00  E-value=0.006  Score=49.07  Aligned_cols=22  Identities=36%  Similarity=0.599  Sum_probs=20.3

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|.|||||.+.+..
T Consensus        36 e~~~I~G~nGsGKSTLl~~i~G   57 (269)
T PRK13648         36 QWTSIVGHNGSGKSTIAKLMIG   57 (269)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            6999999999999999999864

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=95.99  E-value=0.0097  Score=52.61  Aligned_cols=43  Identities=30%  Similarity=0.485  Sum_probs=34.5

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +++|.+..++.+...+....      ..-+-|+|..|+||||+|+.+++
T Consensus        66 ~iiGqs~~i~~l~~al~~~~------~~~vLi~Ge~GtGKt~lAr~i~~  108 (531)
T TIGR02902        66 EIIGQEEGIKALKAALCGPN------PQHVIIYGPPGVGKTAAARLVLE  108 (531)
T ss_pred             HeeCcHHHHHHHHHHHhCCC------CceEEEECCCCCCHHHHHHHHHH
Confidence            58999999999988765432      23456899999999999999974

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=95.97  E-value=0.0084  Score=55.18  Aligned_cols=51  Identities=25%  Similarity=0.288  Sum_probs=36.2

Q ss_pred             CcceechhhHHHHHHHhhcCCCC-------CCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          177 SEIFGREKEKNELVNRLLCESSE-------ERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .++.|.+..++.|.+++...-.+       .-...+-|-++|..|+||||||+.+.+.
T Consensus       178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~  235 (733)
T TIGR01243       178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE  235 (733)
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH
Confidence            35889999999998876421000       0022345779999999999999998763

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.97  E-value=0.0063  Score=49.18  Aligned_cols=22  Identities=36%  Similarity=0.459  Sum_probs=20.1

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|.|||||++.+.-
T Consensus        48 e~~~I~G~nGsGKSTLl~~l~G   69 (276)
T PRK14271         48 AVTSLMGPTGSGKTTFLRTLNR   69 (276)
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            5899999999999999999864

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=95.97  E-value=0.01  Score=53.36  Aligned_cols=45  Identities=29%  Similarity=0.386  Sum_probs=35.9

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|-+.-+..|...+..+.-     ...+-++|..|+||||+|+.+.+
T Consensus        16 ~divGQe~vv~~L~~~l~~~rl-----~hAyLf~Gp~GvGKTTlAr~lAk   60 (647)
T PRK07994         16 AEVVGQEHVLTALANALDLGRL-----HHAYLFSGTRGVGKTTIARLLAK   60 (647)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999988865432     24567999999999999998743

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.96  E-value=0.0062  Score=48.64  Aligned_cols=22  Identities=27%  Similarity=0.516  Sum_probs=20.2

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|.|||||++.+..
T Consensus        39 e~~~i~G~nGsGKSTLl~~i~G   60 (258)
T PRK14268         39 SVTALIGPSGCGKSTFIRCLNR   60 (258)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            6899999999999999999863

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=95.96  E-value=0.0063  Score=50.45  Aligned_cols=22  Identities=36%  Similarity=0.608  Sum_probs=20.3

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|.|||||++.+..
T Consensus        42 e~~~IvG~sGsGKSTLl~~l~g   63 (327)
T PRK11308         42 KTLAVVGESGCGKSTLARLLTM   63 (327)
T ss_pred             CEEEEECCCCCcHHHHHHHHHc
Confidence            5999999999999999999864

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=95.95  E-value=0.0099  Score=53.14  Aligned_cols=44  Identities=27%  Similarity=0.413  Sum_probs=36.3

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+++|.+..++.|..++..+.-     ..-+-++|..|+||||+|+.+-
T Consensus        24 ~dliGq~~~v~~L~~~~~~gri-----~ha~L~~Gp~GvGKTt~Ar~lA   67 (598)
T PRK09111         24 DDLIGQEAMVRTLTNAFETGRI-----AQAFMLTGVRGVGKTTTARILA   67 (598)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCC-----CceEEEECCCCCCHHHHHHHHH
Confidence            3689999999999999876542     3467789999999999999874

>PRK00098 GTPase RsgA; Reviewed

Probab=95.95  E-value=0.011  Score=48.43  Aligned_cols=34  Identities=29%  Similarity=0.391  Sum_probs=26.6

Q ss_pred             hHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          185 EKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       185 ~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ..+.|.++|.+         ++++++|..|+|||||.+.+...
T Consensus       154 gi~~L~~~l~g---------k~~~~~G~sgvGKStlin~l~~~  187 (298)
T PRK00098        154 GLDELKPLLAG---------KVTVLAGQSGVGKSTLLNALAPD  187 (298)
T ss_pred             cHHHHHhhccC---------ceEEEECCCCCCHHHHHHHHhCC
Confidence            35667776631         48899999999999999988654

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.95  E-value=0.012  Score=52.90  Aligned_cols=43  Identities=26%  Similarity=0.342  Sum_probs=34.5

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      .+++|-+.-++.|..++..+.-     ..-+-++|..|+||||+|+.+
T Consensus        16 ~eivGQe~i~~~L~~~i~~~ri-----~ha~Lf~Gp~GvGKttlA~~l   58 (620)
T PRK14954         16 ADITAQEHITHTIQNSLRMDRV-----GHGYIFSGLRGVGKTTAARVF   58 (620)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCC-----CeeEEEECCCCCCHHHHHHHH
Confidence            3689999999999998865432     345789999999999999764

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=95.94  E-value=0.0066  Score=48.81  Aligned_cols=22  Identities=32%  Similarity=0.619  Sum_probs=20.1

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||.+.+..
T Consensus        40 e~~~i~G~NGsGKSTLl~~l~G   61 (267)
T PRK15112         40 QTLAIIGENGSGKSTLAKMLAG   61 (267)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhC
Confidence            5999999999999999998764

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=95.93  E-value=0.0062  Score=50.56  Aligned_cols=22  Identities=27%  Similarity=0.388  Sum_probs=20.2

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|.|||||++.+..
T Consensus        43 e~~~ivG~sGsGKSTL~~~l~G   64 (330)
T PRK09473         43 ETLGIVGESGSGKSQTAFALMG   64 (330)
T ss_pred             CEEEEECCCCchHHHHHHHHHc
Confidence            5999999999999999999863

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=95.93  E-value=0.0089  Score=54.41  Aligned_cols=39  Identities=31%  Similarity=0.558  Sum_probs=31.2

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHH
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQ  222 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~  222 (229)
                      .++||+.+.+.+++.|.-..    ++-.|  .||-+|||||++|.
T Consensus       171 PvIGRd~EI~r~iqIL~RR~----KNNPv--LiGEpGVGKTAIvE  209 (786)
T COG0542         171 PVIGRDEEIRRTIQILSRRT----KNNPV--LVGEPGVGKTAIVE  209 (786)
T ss_pred             CCcChHHHHHHHHHHHhccC----CCCCe--EecCCCCCHHHHHH
Confidence            48999999999999998665    22233  58999999999764

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=95.93  E-value=0.0067  Score=48.69  Aligned_cols=22  Identities=36%  Similarity=0.649  Sum_probs=20.1

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|.|||||.+.+..
T Consensus        38 e~~~i~G~nGsGKSTLl~~l~G   59 (265)
T TIGR02769        38 ETVGLLGRSGCGKSTLARLLLG   59 (265)
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            6999999999999999998764

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=95.91  E-value=0.0064  Score=52.74  Aligned_cols=21  Identities=33%  Similarity=0.474  Sum_probs=19.5

Q ss_pred             EEEEEecCCCCcHHHHHHHHh
Q 037814          205 RIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .|+++||..|+||||++.++.
T Consensus       257 ~Vi~LvGpnGvGKTTTiaKLA  277 (484)
T PRK06995        257 GVFALMGPTGVGKTTTTAKLA  277 (484)
T ss_pred             cEEEEECCCCccHHHHHHHHH
Confidence            799999999999999998875

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=95.91  E-value=0.012  Score=51.65  Aligned_cols=44  Identities=30%  Similarity=0.336  Sum_probs=35.3

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +++|-+.-+..|...+..+.-     ..-+-++|..|+||||+|+.+.+
T Consensus        22 dliGq~~vv~~L~~ai~~~ri-----~~a~Lf~Gp~G~GKTT~ArilAk   65 (507)
T PRK06645         22 ELQGQEVLVKVLSYTILNDRL-----AGGYLLTGIRGVGKTTSARIIAK   65 (507)
T ss_pred             HhcCcHHHHHHHHHHHHcCCC-----CceEEEECCCCCCHHHHHHHHHH
Confidence            689999999988887755431     35678999999999999998854

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.91  E-value=0.012  Score=52.51  Aligned_cols=44  Identities=25%  Similarity=0.275  Sum_probs=36.1

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+++|-+.-++.|..++..+.     -...+-++|..|+||||+|+.+-
T Consensus        13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lA   56 (584)
T PRK14952         13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILA   56 (584)
T ss_pred             HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHH
Confidence            368999999999999987543     23567899999999999998764

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=95.90  E-value=0.0069  Score=50.04  Aligned_cols=22  Identities=32%  Similarity=0.504  Sum_probs=20.3

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|.|||||++.+..
T Consensus        53 e~~~I~G~nGsGKSTLl~~L~G   74 (320)
T PRK13631         53 KIYFIIGNSGSGKSTLVTHFNG   74 (320)
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            5999999999999999999864

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=95.90  E-value=0.0071  Score=49.06  Aligned_cols=22  Identities=27%  Similarity=0.542  Sum_probs=20.3

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||++.+..
T Consensus        64 e~~~liG~NGsGKSTLl~~I~G   85 (282)
T cd03291          64 EMLAITGSTGSGKTSLLMLILG   85 (282)
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            5899999999999999999874

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=95.89  E-value=0.0069  Score=48.81  Aligned_cols=21  Identities=33%  Similarity=0.589  Sum_probs=19.6

Q ss_pred             EEEEEecCCCCcHHHHHHHHh
Q 037814          205 RIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+++|+|..|.|||||++.+.
T Consensus        52 e~~~I~G~nGsGKSTLl~~la   72 (272)
T PRK14236         52 RVTAFIGPSGCGKSTLLRCFN   72 (272)
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            699999999999999999984

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.86  E-value=0.012  Score=52.75  Aligned_cols=44  Identities=25%  Similarity=0.342  Sum_probs=35.8

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+++|-+.-++.|..++..+.-     ...+-++|..|+||||+|+.+.
T Consensus        16 ~eiiGq~~~~~~L~~~i~~~~i-----~~a~Lf~Gp~G~GKTtlA~~lA   59 (585)
T PRK14950         16 AELVGQEHVVQTLRNAIAEGRV-----AHAYLFTGPRGVGKTSTARILA   59 (585)
T ss_pred             HHhcCCHHHHHHHHHHHHhCCC-----ceEEEEECCCCCCHHHHHHHHH
Confidence            3689999999999988875431     3556799999999999999875

>PRK09183 transposase/IS protein; Provisional

Probab=95.86  E-value=0.0068  Score=48.53  Aligned_cols=22  Identities=41%  Similarity=0.430  Sum_probs=18.8

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ..+.|+|..|+|||+||..+.+
T Consensus       103 ~~v~l~Gp~GtGKThLa~al~~  124 (259)
T PRK09183        103 ENIVLLGPSGVGKTHLAIALGY  124 (259)
T ss_pred             CeEEEEeCCCCCHHHHHHHHHH
Confidence            4566999999999999998753

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=95.85  E-value=0.011  Score=36.09  Aligned_cols=19  Identities=32%  Similarity=0.475  Sum_probs=17.3

Q ss_pred             EEEEecCCCCcHHHHHHHH
Q 037814          206 IISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       206 Vi~IvG~gGvGKTTLa~~v  224 (229)
                      +..|.|..|+|||||.-.+
T Consensus        25 ~tli~G~nGsGKSTllDAi   43 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAI   43 (62)
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            8999999999999998664

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.85  E-value=0.0077  Score=48.32  Aligned_cols=22  Identities=27%  Similarity=0.519  Sum_probs=20.3

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|.|||||++.+..
T Consensus        43 e~~~i~G~nGsGKSTLl~~l~G   64 (265)
T PRK14252         43 QVTALIGPSGCGKSTFLRCFNR   64 (265)
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            6999999999999999999863

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=95.82  E-value=0.017  Score=49.36  Aligned_cols=23  Identities=30%  Similarity=0.265  Sum_probs=20.5

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ...+-|+|..|+|||+|++.+++
T Consensus       136 ~n~l~l~G~~G~GKThL~~ai~~  158 (405)
T TIGR00362       136 YNPLFIYGGVGLGKTHLLHAIGN  158 (405)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH
Confidence            45688999999999999999886

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=95.82  E-value=0.014  Score=49.69  Aligned_cols=49  Identities=24%  Similarity=0.394  Sum_probs=33.4

Q ss_pred             cceechhhHHHHHHHhhcC--------CCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLCE--------SSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~--------~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .++|.++.++.+.-.|...        .-......+-|-++|..|+||||||+.+-.
T Consensus        13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~   69 (441)
T TIGR00390        13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAK   69 (441)
T ss_pred             hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHH
Confidence            4788888888876555431        000011236688999999999999998753

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=95.81  E-value=0.0078  Score=49.96  Aligned_cols=22  Identities=32%  Similarity=0.531  Sum_probs=20.2

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|.|||||++.+..
T Consensus        48 e~~~lvG~sGsGKSTLlk~i~G   69 (331)
T PRK15079         48 ETLGVVGESGCGKSTFARAIIG   69 (331)
T ss_pred             CEEEEECCCCCCHHHHHHHHHC
Confidence            5999999999999999998864

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=95.81  E-value=0.0083  Score=46.91  Aligned_cols=21  Identities=29%  Similarity=0.572  Sum_probs=19.2

Q ss_pred             EEEEEecCCCCcHHHHHHHHh
Q 037814          205 RIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      ..|+|+|..|.|||||.|.+.
T Consensus        54 e~vGiiG~NGaGKSTLlklia   74 (249)
T COG1134          54 ERVGIIGHNGAGKSTLLKLIA   74 (249)
T ss_pred             CEEEEECCCCCcHHHHHHHHh
Confidence            489999999999999999875

>cd01855 YqeH YqeH

Probab=95.81  E-value=0.013  Score=44.42  Aligned_cols=39  Identities=23%  Similarity=0.239  Sum_probs=27.6

Q ss_pred             echhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          181 GREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       181 G~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      |.++-++.|.+.+.        .-..+.++|..|+|||||...+.+.
T Consensus       112 gi~eL~~~l~~~l~--------~~~~~~~~G~~nvGKStliN~l~~~  150 (190)
T cd01855         112 GVEELINAIKKLAK--------KGGDVYVVGATNVGKSTLINALLKK  150 (190)
T ss_pred             CHHHHHHHHHHHhh--------cCCcEEEEcCCCCCHHHHHHHHHHh
Confidence            44544555555442        1256889999999999999988763

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=95.81  E-value=0.018  Score=47.05  Aligned_cols=26  Identities=23%  Similarity=0.417  Sum_probs=22.1

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .....|.|+|.+|+||||+...+...
T Consensus        36 ~~~~rIllvGktGVGKSSliNsIlG~   61 (313)
T TIGR00991        36 VSSLTILVMGKGGVGKSSTVNSIIGE   61 (313)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCC
Confidence            44567889999999999999998764

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.81  E-value=0.0085  Score=51.13  Aligned_cols=22  Identities=32%  Similarity=0.443  Sum_probs=19.4

Q ss_pred             CCEEEEEecCCCCcHHHHHHHH
Q 037814          203 GPRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      +-.+|++||..|+||||++..+
T Consensus       190 ~g~vi~lvGpnG~GKTTtlakL  211 (420)
T PRK14721        190 QGGVYALIGPTGVGKTTTTAKL  211 (420)
T ss_pred             CCcEEEEECCCCCCHHHHHHHH
Confidence            3479999999999999999865

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=95.80  E-value=0.008  Score=48.33  Aligned_cols=22  Identities=36%  Similarity=0.643  Sum_probs=20.2

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||++.+.-
T Consensus        39 e~~~i~G~nGsGKSTLl~~l~G   60 (268)
T PRK10419         39 ETVALLGRSGCGKSTLARLLVG   60 (268)
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            5899999999999999999864

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.77  E-value=0.0082  Score=48.75  Aligned_cols=22  Identities=23%  Similarity=0.505  Sum_probs=20.1

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      =.+++|+|..|+|||||++.+.
T Consensus        65 Ge~~~I~G~nGsGKSTLl~~l~   86 (285)
T PRK14254         65 NQVTAMIGPSGCGKSTFLRCIN   86 (285)
T ss_pred             CCEEEEECCCCCCHHHHHHHHh
Confidence            3699999999999999999985

>PF13245 AAA_19: Part of AAA domain

Probab=95.77  E-value=0.0099  Score=38.06  Aligned_cols=20  Identities=40%  Similarity=0.464  Sum_probs=15.6

Q ss_pred             EEEEEecCCCCcHH-HHHHHH
Q 037814          205 RIISLVGMGGIGKT-TLAQFA  224 (229)
Q Consensus       205 ~Vi~IvG~gGvGKT-TLa~~v  224 (229)
                      .++.|.|.+|.||| |+++.+
T Consensus        11 ~~~vv~g~pGtGKT~~~~~~i   31 (76)
T PF13245_consen   11 PLFVVQGPPGTGKTTTLAARI   31 (76)
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            57888999999999 444443

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.75  E-value=0.0087  Score=49.11  Aligned_cols=23  Identities=26%  Similarity=0.479  Sum_probs=20.6

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      =.+++|+|..|.|||||++.+..
T Consensus        71 Ge~~~IvG~nGsGKSTLl~~L~G   93 (305)
T PRK14264         71 KSVTALIGPSGCGKSTFLRCLNR   93 (305)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            35999999999999999999863

>PRK13705 plasmid-partitioning protein SopA; Provisional

Probab=95.75  E-value=0.019  Score=48.70  Aligned_cols=23  Identities=26%  Similarity=0.407  Sum_probs=19.6

Q ss_pred             CCCEEEEEecC-CCCcHHHHHHHH
Q 037814          202 KGPRIISLVGM-GGIGKTTLAQFA  224 (229)
Q Consensus       202 ~~~~Vi~IvG~-gGvGKTTLa~~v  224 (229)
                      ...+||+|+.. ||+||||++-.+
T Consensus       104 ~~~~vIai~n~KGGVGKTT~a~nL  127 (388)
T PRK13705        104 VFPPVIGVAAHKGGVYKTSVSVHL  127 (388)
T ss_pred             CCCeEEEEECCCCCchHHHHHHHH
Confidence            45899999998 999999987653

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=95.73  E-value=0.0081  Score=51.18  Aligned_cols=24  Identities=33%  Similarity=0.571  Sum_probs=20.7

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      ..--||+|+|..|+||||+++.+-
T Consensus       365 ~~gEvigilGpNgiGKTTFvk~LA  388 (591)
T COG1245         365 YDGEVIGILGPNGIGKTTFVKLLA  388 (591)
T ss_pred             ecceEEEEECCCCcchHHHHHHHh
Confidence            345799999999999999999864

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=95.70  E-value=0.0093  Score=48.30  Aligned_cols=22  Identities=27%  Similarity=0.545  Sum_probs=20.1

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|.|||||.+.+..
T Consensus        37 e~~~l~G~nGsGKSTLl~~l~G   58 (280)
T PRK13633         37 EFLVILGRNGSGKSTIAKHMNA   58 (280)
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            5899999999999999999864

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=95.70  E-value=0.013  Score=51.55  Aligned_cols=49  Identities=29%  Similarity=0.263  Sum_probs=35.9

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ++.-=..-+++|..||...-. .....+++-+.|.+|+||||.++.+.++
T Consensus        20 eLavhkkKv~eV~~wl~~~~~-~~~~~~iLlLtGP~G~GKtttv~~La~e   68 (519)
T PF03215_consen   20 ELAVHKKKVEEVRSWLEEMFS-GSSPKRILLLTGPSGCGKTTTVKVLAKE   68 (519)
T ss_pred             HhhccHHHHHHHHHHHHHHhc-cCCCcceEEEECCCCCCHHHHHHHHHHH
Confidence            344445567889999975322 1234569999999999999999988754

>TIGR00959 ffh signal recognition particle protein

Probab=95.70  E-value=0.021  Score=48.99  Aligned_cols=23  Identities=43%  Similarity=0.608  Sum_probs=19.2

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHH
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      .+..||.++|..|+||||.+-.+
T Consensus        97 ~~p~vi~~vG~~GsGKTTtaakL  119 (428)
T TIGR00959        97 KPPTVILMVGLQGSGKTTTCGKL  119 (428)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHH
Confidence            34689999999999999996554

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=95.69  E-value=0.016  Score=47.64  Aligned_cols=25  Identities=36%  Similarity=0.589  Sum_probs=21.4

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ..-..|.|+|+.|+||||+++.+..
T Consensus       131 ~~~~~I~l~G~~GsGKStvg~~La~  155 (309)
T PRK08154        131 ARRRRIALIGLRGAGKSTLGRMLAA  155 (309)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999999754

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=95.67  E-value=0.015  Score=51.09  Aligned_cols=51  Identities=31%  Similarity=0.357  Sum_probs=33.5

Q ss_pred             CcceechhhHHHHHHHhh---cCCC---CCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          177 SEIFGREKEKNELVNRLL---CESS---EERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~---~~~~---~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .+++|.+..+++|.+++.   ....   ......+=+-++|.+|+|||+||+.+.+.
T Consensus        55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~  111 (495)
T TIGR01241        55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGE  111 (495)
T ss_pred             HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence            468898888777766543   1100   00012234779999999999999998653

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=95.67  E-value=0.0086  Score=52.69  Aligned_cols=22  Identities=32%  Similarity=0.673  Sum_probs=20.4

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||++.++.
T Consensus       289 e~~~l~G~NGsGKSTLlk~i~G  310 (506)
T PRK13549        289 EILGIAGLVGAGRTELVQCLFG  310 (506)
T ss_pred             cEEEEeCCCCCCHHHHHHHHhC
Confidence            5999999999999999999874

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=95.66  E-value=0.0087  Score=54.50  Aligned_cols=22  Identities=32%  Similarity=0.548  Sum_probs=19.6

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      =..|+|||-.|+|||||+|.+-
T Consensus       499 Ge~vaIvG~SGsGKSTL~KLL~  520 (709)
T COG2274         499 GEKVAIVGRSGSGKSTLLKLLL  520 (709)
T ss_pred             CCEEEEECCCCCCHHHHHHHHh
Confidence            3689999999999999999863

>PRK10865 protein disaggregation chaperone; Provisional

Probab=95.65  E-value=0.019  Score=53.64  Aligned_cols=49  Identities=20%  Similarity=0.331  Sum_probs=36.4

Q ss_pred             cceechhhHHHHHHHhhcCC---CCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLCES---SEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~---~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .++|.+..++.|...+....   ......+.++-++|..|+||||||+.+.+
T Consensus       569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~  620 (857)
T PRK10865        569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALAN  620 (857)
T ss_pred             eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence            58899998888887775321   00113456888999999999999998764

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=95.65  E-value=0.024  Score=48.98  Aligned_cols=49  Identities=24%  Similarity=0.125  Sum_probs=30.3

Q ss_pred             cceechhhH--HHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEK--NELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~--~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      -++|-.+..  ..+.++.............-+-|+|..|+|||+|++.+.+
T Consensus       113 Fv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~  163 (445)
T PRK12422        113 FLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVH  163 (445)
T ss_pred             eeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHH
Confidence            456765553  3444444221100112345678999999999999999876

>PRK06526 transposase; Provisional

Probab=95.65  E-value=0.0086  Score=47.77  Aligned_cols=22  Identities=32%  Similarity=0.235  Sum_probs=18.8

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .-+-|+|.+|+|||+||..+-+
T Consensus        99 ~nlll~Gp~GtGKThLa~al~~  120 (254)
T PRK06526         99 ENVVFLGPPGTGKTHLAIGLGI  120 (254)
T ss_pred             ceEEEEeCCCCchHHHHHHHHH
Confidence            4578999999999999998743

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=95.65  E-value=0.01  Score=46.41  Aligned_cols=23  Identities=35%  Similarity=0.466  Sum_probs=19.8

Q ss_pred             EEEEEecCCCCcHHHHHHHHhcC
Q 037814          205 RIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .-..|+|..|.|||||.+.+.-+
T Consensus        58 e~W~I~G~NGsGKTTLL~ll~~~   80 (257)
T COG1119          58 EHWAIVGPNGAGKTTLLSLLTGE   80 (257)
T ss_pred             CcEEEECCCCCCHHHHHHHHhcc
Confidence            35789999999999999998654

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=95.65  E-value=0.01  Score=45.28  Aligned_cols=22  Identities=27%  Similarity=0.463  Sum_probs=20.1

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|.|||||.+.+..
T Consensus        36 e~~~l~G~nGsGKStLl~~i~G   57 (194)
T cd03213          36 ELTAIMGPSGAGKSTLLNALAG   57 (194)
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            6999999999999999998764

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=95.65  E-value=0.012  Score=49.49  Aligned_cols=24  Identities=46%  Similarity=0.527  Sum_probs=20.8

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+-.+|.|+|..|+||||++..+.
T Consensus       204 ~~~~ii~lvGptGvGKTTt~akLA  227 (407)
T PRK12726        204 SNHRIISLIGQTGVGKTTTLVKLG  227 (407)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHH
Confidence            456899999999999999988764

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=95.65  E-value=0.017  Score=47.90  Aligned_cols=40  Identities=30%  Similarity=0.318  Sum_probs=31.9

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .++|.+.....+...+..+.        -+-+.|.+|+|||+||+.+-
T Consensus        25 ~~~g~~~~~~~~l~a~~~~~--------~vll~G~PG~gKT~la~~lA   64 (329)
T COG0714          25 VVVGDEEVIELALLALLAGG--------HVLLEGPPGVGKTLLARALA   64 (329)
T ss_pred             eeeccHHHHHHHHHHHHcCC--------CEEEECCCCccHHHHHHHHH
Confidence            37888888887777776553        56789999999999999874

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=95.64  E-value=0.019  Score=52.80  Aligned_cols=49  Identities=27%  Similarity=0.395  Sum_probs=36.0

Q ss_pred             cceechhhHHHHHHHhhcCC---CCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLCES---SEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~---~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .++|.+..++.|...+....   .+......++-++|..|+|||+||+.+..
T Consensus       455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~  506 (731)
T TIGR02639       455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAE  506 (731)
T ss_pred             ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHH
Confidence            57888888888887775321   00123466789999999999999998753

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=95.64  E-value=0.0093  Score=52.78  Aligned_cols=22  Identities=32%  Similarity=0.431  Sum_probs=19.9

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||++.+..
T Consensus        36 e~~~iiG~nGsGKSTLl~~i~G   57 (529)
T PRK15134         36 ETLALVGESGSGKSVTALSILR   57 (529)
T ss_pred             CEEEEECCCCCcHHHHHHHHhc
Confidence            5899999999999999998753

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=95.63  E-value=0.018  Score=49.88  Aligned_cols=43  Identities=35%  Similarity=0.454  Sum_probs=35.4

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      .+++|-+..++.|..++..+.-     ...+-++|..|+||||+|+.+
T Consensus        17 ~diiGq~~~v~~L~~~i~~~~i-----~ha~Lf~Gp~G~GKtt~A~~l   59 (451)
T PRK06305         17 SEILGQDAVVAVLKNALRFNRA-----AHAYLFSGIRGTGKTTLARIF   59 (451)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCC-----ceEEEEEcCCCCCHHHHHHHH
Confidence            3689999999999999865432     356778999999999999876

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=95.61  E-value=0.012  Score=42.35  Aligned_cols=23  Identities=30%  Similarity=0.483  Sum_probs=20.2

Q ss_pred             EEEEecCCCCcHHHHHHHHhcCC
Q 037814          206 IISLVGMGGIGKTTLAQFAYNND  228 (229)
Q Consensus       206 Vi~IvG~gGvGKTTLa~~vy~d~  228 (229)
                      .+.++|..|+|||||...+..+.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~  107 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKK  107 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999887653

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=95.61  E-value=0.0098  Score=52.38  Aligned_cols=22  Identities=32%  Similarity=0.524  Sum_probs=20.2

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||.+.+..
T Consensus        38 e~~~liG~NGsGKSTLl~~l~G   59 (510)
T PRK15439         38 EVHALLGGNGAGKSTLMKIIAG   59 (510)
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            6999999999999999999864

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=95.60  E-value=0.011  Score=49.36  Aligned_cols=22  Identities=32%  Similarity=0.585  Sum_probs=20.3

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|.|||||.+.+..
T Consensus        68 ei~gLlGpNGaGKSTLl~~L~G   89 (340)
T PRK13536         68 ECFGLLGPNGAGKSTIARMILG   89 (340)
T ss_pred             CEEEEECCCCCCHHHHHHHHHc
Confidence            6999999999999999998864

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=95.60  E-value=0.028  Score=48.76  Aligned_cols=46  Identities=20%  Similarity=0.170  Sum_probs=29.9

Q ss_pred             cceechhh--HHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          178 EIFGREKE--KNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       178 ~~vG~~~~--~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      -++|..+.  ...+..+..+..    ....-+-|+|..|+|||+|++.+.+.
T Consensus       124 fv~g~~n~~a~~~~~~~~~~~~----~~~~~l~l~G~~G~GKThL~~ai~~~  171 (450)
T PRK00149        124 FVVGKSNRLAHAAALAVAENPG----KAYNPLFIYGGVGLGKTHLLHAIGNY  171 (450)
T ss_pred             cccCCCcHHHHHHHHHHHhCcC----ccCCeEEEECCCCCCHHHHHHHHHHH
Confidence            35665443  344444443221    23456889999999999999998763

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=95.60  E-value=0.019  Score=47.19  Aligned_cols=23  Identities=30%  Similarity=0.349  Sum_probs=20.3

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      -..|.|+|..|+|||||++.+..
T Consensus       144 ~~~ili~G~tGsGKTTll~al~~  166 (308)
T TIGR02788       144 RKNIIISGGTGSGKTTFLKSLVD  166 (308)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHc
Confidence            36899999999999999998764

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=95.60  E-value=0.012  Score=49.43  Aligned_cols=39  Identities=36%  Similarity=0.520  Sum_probs=25.8

Q ss_pred             hhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHH-HHHH
Q 037814          183 EKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTT-LAQF  223 (229)
Q Consensus       183 ~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTT-La~~  223 (229)
                      .+-...+..|+..+-.  -.+-+||++||..|||||| ||+.
T Consensus       184 ~~~l~~~~~~~~~~~~--~~~~~vi~LVGPTGVGKTTTlAKL  223 (407)
T COG1419         184 SEKLRKLLLSLIENLI--VEQKRVIALVGPTGVGKTTTLAKL  223 (407)
T ss_pred             HHHHHHHHHhhccccc--cccCcEEEEECCCCCcHHHHHHHH
Confidence            4445566666654410  0236999999999999986 5554

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=95.59  E-value=0.0098  Score=53.72  Aligned_cols=22  Identities=27%  Similarity=0.412  Sum_probs=20.3

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||++.+..
T Consensus        43 e~~~lvG~nGsGKSTLl~~l~G   64 (623)
T PRK10261         43 ETLAIVGESGSGKSVTALALMR   64 (623)
T ss_pred             CEEEEECCCCChHHHHHHHHHc
Confidence            6999999999999999999864

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=95.59  E-value=0.01  Score=50.57  Aligned_cols=22  Identities=27%  Similarity=0.626  Sum_probs=20.2

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||.+.+..
T Consensus        55 ei~~LvG~NGsGKSTLLr~I~G   76 (400)
T PRK10070         55 EIFVIMGLSGSGKSTMVRLLNR   76 (400)
T ss_pred             CEEEEECCCCchHHHHHHHHHc
Confidence            5999999999999999999864

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=95.57  E-value=0.011  Score=49.02  Aligned_cols=22  Identities=23%  Similarity=0.374  Sum_probs=19.7

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ..|+|+|..|+|||||++.+-+
T Consensus       163 ~~~~~~G~~~~gkstl~~~l~~  184 (325)
T TIGR01526       163 KTVAILGGESTGKSTLVNKLAA  184 (325)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5889999999999999998754

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.57  E-value=0.021  Score=49.95  Aligned_cols=43  Identities=28%  Similarity=0.339  Sum_probs=35.4

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      +++|-+.-+..|..++..+..     ...+-++|..|+||||+|+.+.
T Consensus        17 diiGq~~i~~~L~~~i~~~~i-----~hayLf~Gp~G~GKTtlAr~lA   59 (486)
T PRK14953         17 EVIGQEIVVRILKNAVKLQRV-----SHAYIFAGPRGTGKTTIARILA   59 (486)
T ss_pred             HccChHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHHH
Confidence            589999999999999976542     3556789999999999998864

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=95.56  E-value=0.018  Score=53.40  Aligned_cols=43  Identities=26%  Similarity=0.295  Sum_probs=35.7

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      +|+|-+..++.|..+|..+.-     -..+-++|..|+||||+|+.+-
T Consensus        16 eiiGqe~v~~~L~~~i~~~ri-----~Ha~Lf~Gp~G~GKTt~A~~lA   58 (824)
T PRK07764         16 EVIGQEHVTEPLSTALDSGRI-----NHAYLFSGPRGCGKTSSARILA   58 (824)
T ss_pred             HhcCcHHHHHHHHHHHHhCCC-----CceEEEECCCCCCHHHHHHHHH
Confidence            689999999999999876542     3567899999999999998763

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=95.56  E-value=0.0096  Score=52.19  Aligned_cols=23  Identities=17%  Similarity=0.459  Sum_probs=20.7

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      =.+++|+|..|+|||||.+.++-
T Consensus       274 Ge~~~l~G~nGsGKSTLl~~l~G  296 (491)
T PRK10982        274 GEILGIAGLVGAKRTDIVETLFG  296 (491)
T ss_pred             CcEEEEecCCCCCHHHHHHHHcC
Confidence            36999999999999999999864

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=95.55  E-value=0.01  Score=52.28  Aligned_cols=23  Identities=26%  Similarity=0.554  Sum_probs=20.6

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      =.+++|+|..|+|||||++.+..
T Consensus       289 Ge~~~l~G~NGsGKSTLlk~i~G  311 (510)
T PRK09700        289 GEILGFAGLVGSGRTELMNCLFG  311 (510)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            36899999999999999999864

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=95.54  E-value=0.012  Score=47.02  Aligned_cols=22  Identities=23%  Similarity=0.477  Sum_probs=20.1

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|.|||||++.+..
T Consensus        48 e~~~i~G~nGsGKSTLl~~l~G   69 (257)
T cd03288          48 QKVGICGRTGSGKSSLSLAFFR   69 (257)
T ss_pred             CEEEEECCCCCCHHHHHHHHHc
Confidence            5999999999999999998864

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=95.54  E-value=0.01  Score=52.50  Aligned_cols=23  Identities=26%  Similarity=0.400  Sum_probs=20.5

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHh
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      +=..++|||..|+|||||++.+.
T Consensus       360 ~G~~vaIvG~SGsGKSTLl~lL~  382 (529)
T TIGR02868       360 PGERVAILGPSGSGKSTLLMLLT  382 (529)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHh
Confidence            34789999999999999999985

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=95.53  E-value=0.013  Score=52.56  Aligned_cols=49  Identities=29%  Similarity=0.425  Sum_probs=35.9

Q ss_pred             cceechhhHHHHHHHhhcCC----------------------------CCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLCES----------------------------SEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~----------------------------~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +++|-+..-..++.||....                            ....+.-+|+-++|.+|+||||||+.|-+
T Consensus       272 dLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHViAk  348 (877)
T KOG1969|consen  272 DLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHVIAK  348 (877)
T ss_pred             HHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHHHHHHH
Confidence            46777777777777774321                            00246689999999999999999998754

>PRK12288 GTPase RsgA; Reviewed

Probab=95.53  E-value=0.016  Score=48.41  Aligned_cols=34  Identities=32%  Similarity=0.422  Sum_probs=26.9

Q ss_pred             hHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          185 EKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       185 ~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .++.|.++|..         .++.++|..|||||||...+-.+
T Consensus       195 GideL~~~L~~---------ki~~~vG~sgVGKSTLiN~Ll~~  228 (347)
T PRK12288        195 GLEELEAALTG---------RISIFVGQSGVGKSSLINALLPE  228 (347)
T ss_pred             CHHHHHHHHhh---------CCEEEECCCCCCHHHHHHHhccc
Confidence            46777777752         35789999999999999988654

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=95.52  E-value=0.022  Score=45.71  Aligned_cols=40  Identities=35%  Similarity=0.403  Sum_probs=27.5

Q ss_pred             eechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          180 FGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       180 vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .|...+.-+.+..+....      -.+|.|.|..|+||||+++.+.
T Consensus        62 lg~~~~~~~~l~~~~~~~------~GlilisG~tGSGKTT~l~all  101 (264)
T cd01129          62 LGLKPENLEIFRKLLEKP------HGIILVTGPTGSGKTTTLYSAL  101 (264)
T ss_pred             cCCCHHHHHHHHHHHhcC------CCEEEEECCCCCcHHHHHHHHH
Confidence            565554444444444332      3689999999999999998663

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=95.51  E-value=0.018  Score=45.66  Aligned_cols=34  Identities=29%  Similarity=0.429  Sum_probs=26.5

Q ss_pred             hHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          185 EKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       185 ~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ..+++.+.|..         +++.++|+.|+||+||...+..+
T Consensus       110 gi~eLf~~l~~---------~~~~~~G~sgvGKStLiN~L~~~  143 (245)
T TIGR00157       110 GLKELIEALQN---------RISVFAGQSGVGKSSLINALDPS  143 (245)
T ss_pred             hHHHHHhhhcC---------CEEEEECCCCCCHHHHHHHHhhh
Confidence            36667776642         47889999999999999987654

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR00764 lon_rel lon-related putative ATP-dependent protease

Probab=95.50  E-value=0.016  Score=52.12  Aligned_cols=42  Identities=21%  Similarity=0.419  Sum_probs=32.1

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ++++|.+..++.+...+....       .++ ++|..|+|||||++.+.+
T Consensus        18 ~~viG~~~a~~~l~~a~~~~~-------~~l-l~G~pG~GKT~la~~la~   59 (608)
T TIGR00764        18 DQVIGQEEAVEIIKKAAKQKR-------NVL-LIGEPGVGKSMLAKAMAE   59 (608)
T ss_pred             hhccCHHHHHHHHHHHHHcCC-------CEE-EECCCCCCHHHHHHHHHH
Confidence            468899888887777665432       344 999999999999998753

Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.

>PRK12289 GTPase RsgA; Reviewed

Probab=95.49  E-value=0.017  Score=48.28  Aligned_cols=33  Identities=24%  Similarity=0.417  Sum_probs=26.3

Q ss_pred             HHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          186 KNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       186 ~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .+.|.++|.+         .++.|+|+.||||+||...+..+
T Consensus       163 I~eL~~~L~~---------ki~v~iG~SgVGKSSLIN~L~~~  195 (352)
T PRK12289        163 LEALLEQLRN---------KITVVAGPSGVGKSSLINRLIPD  195 (352)
T ss_pred             HHHHhhhhcc---------ceEEEEeCCCCCHHHHHHHHcCc
Confidence            5677777642         36899999999999999998754

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=95.49  E-value=0.011  Score=52.25  Aligned_cols=22  Identities=32%  Similarity=0.569  Sum_probs=20.3

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||++.++-
T Consensus       346 e~~~l~G~NGsGKSTLl~~i~G  367 (530)
T PRK15064        346 ERLAIIGENGVGKTTLLRTLVG  367 (530)
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            5999999999999999999874

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=95.48  E-value=0.024  Score=47.40  Aligned_cols=43  Identities=28%  Similarity=0.339  Sum_probs=35.6

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      ..++|-+.....+...+..+.     -..-+-|+|..|+||||||+.+
T Consensus        23 ~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~l   65 (351)
T PRK09112         23 TRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHL   65 (351)
T ss_pred             hhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHH
Confidence            468999999999999887554     2356889999999999999864

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=95.48  E-value=0.011  Score=52.11  Aligned_cols=23  Identities=39%  Similarity=0.658  Sum_probs=20.8

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      =.+++|+|..|+|||||++.+..
T Consensus       289 Ge~~~l~G~NGsGKSTLl~~i~G  311 (510)
T PRK15439        289 GEILGLAGVVGAGRTELAETLYG  311 (510)
T ss_pred             CcEEEEECCCCCCHHHHHHHHcC
Confidence            36999999999999999999864

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.48  E-value=0.012  Score=46.95  Aligned_cols=21  Identities=33%  Similarity=0.550  Sum_probs=19.6

Q ss_pred             EEEEEecCCCCcHHHHHHHHh
Q 037814          205 RIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+++|+|..|.|||||.+.+.
T Consensus        37 e~~~i~G~nGsGKSTLl~~ia   57 (257)
T PRK14246         37 SIFGIMGPSGSGKSTLLKVLN   57 (257)
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            599999999999999999875

>PRK07952 DNA replication protein DnaC; Validated

Probab=95.48  E-value=0.023  Score=45.06  Aligned_cols=38  Identities=18%  Similarity=0.079  Sum_probs=26.4

Q ss_pred             hHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          185 EKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       185 ~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+..+.++..+..    .+...+-++|-+|+|||+|+..+.+
T Consensus        84 al~~a~~~~~~~~----~~~~~~~l~G~~GtGKThLa~aia~  121 (244)
T PRK07952         84 ALSKARQYVEEFD----GNIASFIFSGKPGTGKNHLAAAICN  121 (244)
T ss_pred             HHHHHHHHHHhhc----cCCceEEEECCCCCCHHHHHHHHHH
Confidence            3445555553322    2245788999999999999999875

>CHL00176 ftsH cell division protein; Validated

Probab=95.47  E-value=0.012  Score=53.13  Aligned_cols=51  Identities=31%  Similarity=0.324  Sum_probs=33.8

Q ss_pred             CcceechhhHHHHHHHh---hcCCC---CCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          177 SEIFGREKEKNELVNRL---LCESS---EERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L---~~~~~---~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .++.|.++.++.+.+++   .....   -.....+-|-++|.+|+|||+||+.+.+.
T Consensus       183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e  239 (638)
T CHL00176        183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE  239 (638)
T ss_pred             HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            46889877777665554   22210   00122345889999999999999998753

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=95.47  E-value=0.012  Score=52.19  Aligned_cols=23  Identities=30%  Similarity=0.390  Sum_probs=20.5

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      =.+++|+|..|+|||||++.++.
T Consensus       312 Ge~~~i~G~nGsGKSTLlk~l~G  334 (529)
T PRK15134        312 GETLGLVGESGSGKSTTGLALLR  334 (529)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            35899999999999999999864

>PRK13409 putative ATPase RIL; Provisional

Probab=95.47  E-value=0.012  Score=52.80  Aligned_cols=22  Identities=45%  Similarity=0.742  Sum_probs=20.3

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||++.+..
T Consensus       366 eiv~l~G~NGsGKSTLlk~L~G  387 (590)
T PRK13409        366 EVIGIVGPNGIGKTTFAKLLAG  387 (590)
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            5999999999999999999864

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=95.47  E-value=0.012  Score=44.26  Aligned_cols=20  Identities=35%  Similarity=0.710  Sum_probs=18.7

Q ss_pred             EEEEEecCCCCcHHHHHHHH
Q 037814          205 RIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      ..++|.|-.|+||+|||+.+
T Consensus        40 QTlaiIG~NGSGKSTLakMl   59 (267)
T COG4167          40 QTLAIIGENGSGKSTLAKML   59 (267)
T ss_pred             cEEEEEccCCCcHhHHHHHH
Confidence            58999999999999999986

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=95.47  E-value=0.013  Score=48.96  Aligned_cols=26  Identities=27%  Similarity=0.487  Sum_probs=23.5

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      +....+.|||..|+|||.+|+.|++.
T Consensus       146 k~PlgllL~GPPGcGKTllAraiA~e  171 (413)
T PLN00020        146 KVPLILGIWGGKGQGKSFQCELVFKK  171 (413)
T ss_pred             CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence            55789999999999999999999874

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=95.47  E-value=0.022  Score=46.01  Aligned_cols=34  Identities=29%  Similarity=0.494  Sum_probs=25.5

Q ss_pred             HHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814          187 NELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       187 ~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      .+|+..|....    .+..||+|-|.+|+||+||.-.+
T Consensus        38 ~~ll~~l~p~t----G~a~viGITG~PGaGKSTli~~L   71 (323)
T COG1703          38 RELLRALYPRT----GNAHVIGITGVPGAGKSTLIEAL   71 (323)
T ss_pred             HHHHHHHhhcC----CCCcEEEecCCCCCchHHHHHHH
Confidence            45555555443    55789999999999999998654

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=95.47  E-value=0.021  Score=44.88  Aligned_cols=47  Identities=28%  Similarity=0.390  Sum_probs=35.0

Q ss_pred             CCCCcceechhhHHHHHH----HhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          174 IDESEIFGREKEKNELVN----RLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       174 ~~~~~~vG~~~~~~~l~~----~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +.-++++|.+.+++.|++    +|.+.      ...-+-+||..|.|||+|++.+.+
T Consensus        24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~------pannvLL~G~rGtGKSSlVkall~   74 (249)
T PF05673_consen   24 IRLDDLIGIERQKEALIENTEQFLQGL------PANNVLLWGARGTGKSSLVKALLN   74 (249)
T ss_pred             CCHHHhcCHHHHHHHHHHHHHHHHcCC------CCcceEEecCCCCCHHHHHHHHHH
Confidence            344579999999998865    33322      234556799999999999999865

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=95.45  E-value=0.012  Score=52.46  Aligned_cols=22  Identities=32%  Similarity=0.593  Sum_probs=20.3

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||.+.++.
T Consensus       351 e~~~l~G~NGsGKSTLl~~i~G  372 (556)
T PRK11819        351 GIVGIIGPNGAGKSTLFKMITG  372 (556)
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            5899999999999999999874

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=95.45  E-value=0.02  Score=44.73  Aligned_cols=41  Identities=24%  Similarity=0.201  Sum_probs=32.9

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHH
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQF  223 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~  223 (229)
                      .++||-++.++.+.-+-.+++      ..-+-|-||+|+||||=+..
T Consensus        27 ~dIVGNe~tv~rl~via~~gn------mP~liisGpPG~GKTTsi~~   67 (333)
T KOG0991|consen   27 QDIVGNEDTVERLSVIAKEGN------MPNLIISGPPGTGKTTSILC   67 (333)
T ss_pred             HHhhCCHHHHHHHHHHHHcCC------CCceEeeCCCCCchhhHHHH
Confidence            368999999999887776654      56677999999999995543

>cd01854 YjeQ_engC YjeQ/EngC

Probab=95.44  E-value=0.02  Score=46.55  Aligned_cols=32  Identities=34%  Similarity=0.422  Sum_probs=25.5

Q ss_pred             HHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          186 KNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       186 ~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+.|..+|..         .+++++|..|+|||||++.+..
T Consensus       152 i~~L~~~L~~---------k~~~~~G~sg~GKSTlin~l~~  183 (287)
T cd01854         152 LDELREYLKG---------KTSVLVGQSGVGKSTLINALLP  183 (287)
T ss_pred             HHHHHhhhcc---------ceEEEECCCCCCHHHHHHHHhc
Confidence            4566666642         5899999999999999998754

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=95.44  E-value=0.011  Score=51.64  Aligned_cols=23  Identities=30%  Similarity=0.472  Sum_probs=21.1

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ..+|+|.|..|+||||+++.+.+
T Consensus       284 ~~ii~i~G~sgsGKst~a~~la~  306 (512)
T PRK13477        284 QPIIAIDGPAGAGKSTVTRAVAK  306 (512)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            47999999999999999999875

>TIGR01817 nifA Nif-specific regulatory protein

Probab=95.43  E-value=0.025  Score=50.15  Aligned_cols=50  Identities=20%  Similarity=0.264  Sum_probs=38.1

Q ss_pred             CCCCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          174 IDESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       174 ~~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .....++|....+.++++.+..-.    ..-.-|-|+|-.|+|||++|+.|++.
T Consensus       193 ~~~~~liG~s~~~~~~~~~~~~~a----~~~~pvli~Ge~GtGK~~lA~~ih~~  242 (534)
T TIGR01817       193 GKEDGIIGKSPAMRQVVDQARVVA----RSNSTVLLRGESGTGKELIAKAIHYL  242 (534)
T ss_pred             CccCceEECCHHHHHHHHHHHHHh----CcCCCEEEECCCCccHHHHHHHHHHh
Confidence            344579999999999888775432    11234569999999999999999863

This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=95.43  E-value=0.012  Score=53.08  Aligned_cols=23  Identities=35%  Similarity=0.460  Sum_probs=20.5

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      =.+++|+|..|+|||||++.+..
T Consensus       350 Ge~~~lvG~nGsGKSTLlk~i~G  372 (623)
T PRK10261        350 GETLSLVGESGSGKSTTGRALLR  372 (623)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHc
Confidence            35999999999999999999863

>PRK13409 putative ATPase RIL; Provisional

Probab=95.42  E-value=0.012  Score=52.72  Aligned_cols=23  Identities=30%  Similarity=0.541  Sum_probs=20.5

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      =.+++|+|..|+|||||++.+..
T Consensus        99 Gev~gLvG~NGaGKSTLlkiL~G  121 (590)
T PRK13409         99 GKVTGILGPNGIGKTTAVKILSG  121 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            36999999999999999998754

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=95.42  E-value=0.013  Score=48.55  Aligned_cols=22  Identities=23%  Similarity=0.495  Sum_probs=20.4

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|.|||||++.++.
T Consensus       109 e~v~IvG~~GsGKSTLl~~L~g  130 (329)
T PRK14257        109 KVTAFIGPSGCGKSTFLRNLNQ  130 (329)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            6899999999999999999875

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=95.42  E-value=0.015  Score=49.13  Aligned_cols=22  Identities=41%  Similarity=0.492  Sum_probs=19.2

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      ..+|.+||..|+||||.+..+-
T Consensus       174 ~~vi~lvGptGvGKTTT~aKLA  195 (388)
T PRK12723        174 KRVFILVGPTGVGKTTTIAKLA  195 (388)
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            5799999999999999887653

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=95.40  E-value=0.012  Score=51.65  Aligned_cols=22  Identities=32%  Similarity=0.662  Sum_probs=20.2

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||.+.++-
T Consensus       279 e~~~liG~NGsGKSTLl~~l~G  300 (501)
T PRK10762        279 EILGVSGLMGAGRTELMKVLYG  300 (501)
T ss_pred             cEEEEecCCCCCHHHHHHHHhC
Confidence            5899999999999999999864

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=95.40  E-value=0.012  Score=53.18  Aligned_cols=23  Identities=39%  Similarity=0.600  Sum_probs=20.7

Q ss_pred             EEEEEecCCCCcHHHHHHHHhcC
Q 037814          205 RIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .+++|+|..|+|||||.+.++..
T Consensus       346 e~~~l~G~NGsGKSTLlk~l~G~  368 (635)
T PRK11147        346 DKIALIGPNGCGKTTLLKLMLGQ  368 (635)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            58999999999999999998753

>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]

Probab=95.38  E-value=0.018  Score=51.39  Aligned_cols=36  Identities=33%  Similarity=0.614  Sum_probs=28.3

Q ss_pred             hhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHH-HHHHHhcC
Q 037814          184 KEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTT-LAQFAYNN  227 (229)
Q Consensus       184 ~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTT-La~~vy~d  227 (229)
                      .-+++|++.+.+.        .||-|||-.|+|||| |+|.+|.|
T Consensus       359 ~~R~~ll~~ir~n--------~vvvivgETGSGKTTQl~QyL~ed  395 (1042)
T KOG0924|consen  359 ACRDQLLSVIREN--------QVVVIVGETGSGKTTQLAQYLYED  395 (1042)
T ss_pred             HHHHHHHHHHhhC--------cEEEEEecCCCCchhhhHHHHHhc
Confidence            3455777776544        599999999999998 78888876

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=95.38  E-value=0.012  Score=51.68  Aligned_cols=22  Identities=32%  Similarity=0.733  Sum_probs=20.2

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||.+.+..
T Consensus       280 e~~~iiG~NGsGKSTLlk~l~G  301 (501)
T PRK11288        280 EIVGLFGLVGAGRSELMKLLYG  301 (501)
T ss_pred             cEEEEEcCCCCCHHHHHHHHcC
Confidence            5899999999999999999864

>PRK13869 plasmid-partitioning protein RepA; Provisional

Probab=95.38  E-value=0.032  Score=47.68  Aligned_cols=42  Identities=24%  Similarity=0.308  Sum_probs=28.8

Q ss_pred             hhhHHHHHHHhhc--C---------CCCCCCCCEEEEEecC-CCCcHHHHHHHH
Q 037814          183 EKEKNELVNRLLC--E---------SSEERKGPRIISLVGM-GGIGKTTLAQFA  224 (229)
Q Consensus       183 ~~~~~~l~~~L~~--~---------~~~~~~~~~Vi~IvG~-gGvGKTTLa~~v  224 (229)
                      .+++.++.++|..  .         .-....+.+||+|+.. ||+||||++-.+
T Consensus        89 ~~di~~lr~~l~~~~~~~~~~~~~~~r~~~~~~~vIav~n~KGGvGKTTta~nL  142 (405)
T PRK13869         89 LGQINEIRQMLAGSTRGRESIDFVPHRRGSEHLQVIAVTNFKGGSGKTTTSAHL  142 (405)
T ss_pred             HHHHHHHHHHHHhhccccccccccCCCCCCCCceEEEEEcCCCCCCHHHHHHHH
Confidence            4577777777753  0         0001245799999987 999999987653

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=95.38  E-value=0.022  Score=47.80  Aligned_cols=22  Identities=32%  Similarity=0.422  Sum_probs=19.9

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      -..|.|+|..|+||||+++.+.
T Consensus       134 ~glilI~GpTGSGKTTtL~aLl  155 (358)
T TIGR02524       134 EGIVFITGATGSGKSTLLAAII  155 (358)
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            3799999999999999999875

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=95.37  E-value=0.013  Score=52.23  Aligned_cols=22  Identities=32%  Similarity=0.578  Sum_probs=20.3

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||++.++.
T Consensus       349 e~~~l~G~NGsGKSTLl~~l~G  370 (552)
T TIGR03719       349 GIVGVIGPNGAGKSTLFRMITG  370 (552)
T ss_pred             CEEEEECCCCCCHHHHHHHHcC
Confidence            5999999999999999999864

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H

Probab=95.36  E-value=0.011  Score=42.42  Aligned_cols=44  Identities=23%  Similarity=0.263  Sum_probs=28.2

Q ss_pred             eechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          180 FGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       180 vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ||.-..++++.+-+..-.    ..-.-|-|.|-.|+||+++|+.+++.
T Consensus         1 vG~S~~~~~l~~~l~~~a----~~~~pvli~GE~GtGK~~~A~~lh~~   44 (138)
T PF14532_consen    1 VGKSPAMRRLRRQLERLA----KSSSPVLITGEPGTGKSLLARALHRY   44 (138)
T ss_dssp             --SCHHHHHHHHHHHHHH----CSSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred             CCCCHHHHHHHHHHHHHh----CCCCcEEEEcCCCCCHHHHHHHHHhh
Confidence            355555566655554321    12245689999999999999998864

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=95.35  E-value=0.017  Score=47.04  Aligned_cols=23  Identities=35%  Similarity=0.486  Sum_probs=20.6

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .-+|.|.|..|+||||+|+.+.+
T Consensus        92 p~iIlI~G~sgsGKStlA~~La~  114 (301)
T PRK04220         92 PIIILIGGASGVGTSTIAFELAS  114 (301)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998864

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=95.35  E-value=0.014  Score=51.62  Aligned_cols=22  Identities=41%  Similarity=0.667  Sum_probs=20.1

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||++.+..
T Consensus       311 e~~~l~G~NGsGKSTLl~~l~G  332 (520)
T TIGR03269       311 EIFGIVGTSGAGKTTLSKIIAG  332 (520)
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            5899999999999999999864

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=95.34  E-value=0.03  Score=51.52  Aligned_cols=48  Identities=23%  Similarity=0.331  Sum_probs=35.6

Q ss_pred             cceechhhHHHHHHHhhcCC---CCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          178 EIFGREKEKNELVNRLLCES---SEERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~---~~~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .++|-+..++.|.+.+....   ....+.+..+-++|..|+|||+||+.+-
T Consensus       459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA  509 (758)
T PRK11034        459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLS  509 (758)
T ss_pred             eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHH
Confidence            47898888888888775321   1112446788999999999999999764

>PRK12377 putative replication protein; Provisional

Probab=95.32  E-value=0.02  Score=45.51  Aligned_cols=24  Identities=29%  Similarity=0.247  Sum_probs=20.8

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhcC
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ..-+-++|..|+|||+||..+.+.
T Consensus       101 ~~~l~l~G~~GtGKThLa~AIa~~  124 (248)
T PRK12377        101 CTNFVFSGKPGTGKNHLAAAIGNR  124 (248)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            357889999999999999998763

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=95.32  E-value=0.014  Score=52.93  Aligned_cols=22  Identities=36%  Similarity=0.549  Sum_probs=20.4

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||.+.+..
T Consensus       339 e~~~l~G~NGsGKSTLlk~l~G  360 (638)
T PRK10636        339 SRIGLLGRNGAGKSTLIKLLAG  360 (638)
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            6999999999999999999864

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=95.30  E-value=0.013  Score=51.60  Aligned_cols=22  Identities=36%  Similarity=0.548  Sum_probs=19.7

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .-|+|+|..|+|||||.+.+..
T Consensus       349 ~riaiiG~NG~GKSTLlk~l~g  370 (530)
T COG0488         349 DRIAIVGPNGAGKSTLLKLLAG  370 (530)
T ss_pred             CEEEEECCCCCCHHHHHHHHhh
Confidence            5799999999999999998843

>PRK15494 era GTPase Era; Provisional

Probab=95.30  E-value=0.02  Score=47.75  Aligned_cols=25  Identities=20%  Similarity=0.270  Sum_probs=21.2

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ...-|+|+|.+|+|||||...+...
T Consensus        51 k~~kV~ivG~~nvGKSTLin~l~~~   75 (339)
T PRK15494         51 KTVSVCIIGRPNSGKSTLLNRIIGE   75 (339)
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHhCC
Confidence            3467899999999999999987653

>PRK03003 GTP-binding protein Der; Reviewed

Probab=95.30  E-value=0.025  Score=49.32  Aligned_cols=26  Identities=23%  Similarity=0.369  Sum_probs=22.2

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .....|+|||.+|+|||||...+...
T Consensus        36 ~~~~~V~IvG~~nvGKSSL~nrl~~~   61 (472)
T PRK03003         36 GPLPVVAVVGRPNVGKSTLVNRILGR   61 (472)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCc
Confidence            44678999999999999999887653

>TIGR03453 partition_RepA plasmid partitioning protein RepA

Probab=95.29  E-value=0.036  Score=47.06  Aligned_cols=23  Identities=35%  Similarity=0.534  Sum_probs=19.1

Q ss_pred             CCCEEEEEecC-CCCcHHHHHHHH
Q 037814          202 KGPRIISLVGM-GGIGKTTLAQFA  224 (229)
Q Consensus       202 ~~~~Vi~IvG~-gGvGKTTLa~~v  224 (229)
                      +..+||+|.+. ||+||||+|-.+
T Consensus       102 ~~~~vI~v~n~KGGvGKTT~a~nL  125 (387)
T TIGR03453       102 EHLQVIAVTNFKGGSGKTTTAAHL  125 (387)
T ss_pred             CCceEEEEEccCCCcCHHHHHHHH
Confidence            55789999976 999999988654

Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=95.29  E-value=0.038  Score=41.34  Aligned_cols=25  Identities=20%  Similarity=0.360  Sum_probs=21.2

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ..-.++++|++++||+||...+.+.
T Consensus       116 ~~~~~~~vG~pnvGKSslin~l~~~  140 (172)
T cd04178         116 TSITVGVVGFPNVGKSSLINSLKRS  140 (172)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCc
Confidence            3457899999999999999988654

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=95.29  E-value=0.026  Score=46.14  Aligned_cols=22  Identities=45%  Similarity=0.484  Sum_probs=18.7

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .-|-|+|..|+|||||++.+.+
T Consensus       133 ~~ilI~G~tGSGKTTll~al~~  154 (299)
T TIGR02782       133 KNILVVGGTGSGKTTLANALLA  154 (299)
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3456999999999999998864

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>PRK01889 GTPase RsgA; Reviewed

Probab=95.29  E-value=0.027  Score=47.28  Aligned_cols=35  Identities=26%  Similarity=0.409  Sum_probs=28.3

Q ss_pred             hhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          184 KEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       184 ~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ..++.|..+|..+        .+++|+|..|+|||||.+.+..
T Consensus       183 ~gl~~L~~~L~~g--------~~~~lvG~sgvGKStLin~L~g  217 (356)
T PRK01889        183 EGLDVLAAWLSGG--------KTVALLGSSGVGKSTLVNALLG  217 (356)
T ss_pred             ccHHHHHHHhhcC--------CEEEEECCCCccHHHHHHHHHH
Confidence            3477888888433        4899999999999999998764

>PLN03073 ABC transporter F family; Provisional

Probab=95.28  E-value=0.014  Score=53.53  Aligned_cols=22  Identities=41%  Similarity=0.576  Sum_probs=20.1

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ..++|+|..|+|||||.+.+..
T Consensus       204 e~~gLvG~NGsGKSTLLr~l~g  225 (718)
T PLN03073        204 RHYGLVGRNGTGKTTFLRYMAM  225 (718)
T ss_pred             CEEEEECCCCCCHHHHHHHHcC
Confidence            5799999999999999999863

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=95.28  E-value=0.014  Score=51.23  Aligned_cols=23  Identities=30%  Similarity=0.585  Sum_probs=20.6

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      =.+++|+|..|+|||||.+.+..
T Consensus       286 Ge~~~l~G~NGsGKSTLl~~l~G  308 (500)
T TIGR02633       286 GEILGVAGLVGAGRTELVQALFG  308 (500)
T ss_pred             CcEEEEeCCCCCCHHHHHHHHhC
Confidence            36999999999999999999864

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=95.27  E-value=0.03  Score=47.84  Aligned_cols=49  Identities=29%  Similarity=0.302  Sum_probs=33.0

Q ss_pred             cceechhhHHHHHHHhhc-------CCC---CCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLC-------ESS---EERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~-------~~~---~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .++|.+..++.|...+.+       ...   +-.....-|-++|..|+||||||+.+.+
T Consensus        72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~  130 (412)
T PRK05342         72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR  130 (412)
T ss_pred             HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence            589999988877544421       100   0001235688999999999999998753

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=95.26  E-value=0.016  Score=48.96  Aligned_cols=22  Identities=32%  Similarity=0.575  Sum_probs=20.0

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||.+.|.-
T Consensus        41 e~~~LlGpsGsGKSTLLr~IaG   62 (375)
T PRK09452         41 EFLTLLGPSGCGKTTVLRLIAG   62 (375)
T ss_pred             CEEEEECCCCCcHHHHHHHHhC
Confidence            5999999999999999998863

>PHA02519 plasmid partition protein SopA; Reviewed

Probab=95.26  E-value=0.038  Score=46.89  Aligned_cols=40  Identities=18%  Similarity=0.337  Sum_probs=26.3

Q ss_pred             hHHHHHHHhhcCCC-CCCCCCEEEEEecC-CCCcHHHHHHHH
Q 037814          185 EKNELVNRLLCESS-EERKGPRIISLVGM-GGIGKTTLAQFA  224 (229)
Q Consensus       185 ~~~~l~~~L~~~~~-~~~~~~~Vi~IvG~-gGvGKTTLa~~v  224 (229)
                      +..++.+.+..... ...++..||+|... |||||||++-.+
T Consensus        86 eI~~lr~~~~~~~~r~~~~~~~vIav~n~KGGVGKTTta~nL  127 (387)
T PHA02519         86 QISHMRDHFGNPNQRPDDKNPVVLAVMSHKGGVYKTSSAVHT  127 (387)
T ss_pred             HHHHHHHHhhccccCcCCCCceEEEEecCCCCCcHHHHHHHH
Confidence            45556655532210 01255899999998 999999988654

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=95.25  E-value=0.034  Score=51.95  Aligned_cols=48  Identities=25%  Similarity=0.409  Sum_probs=36.4

Q ss_pred             CcceechhhHHHHHHHhhcC---CCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814          177 SEIFGREKEKNELVNRLLCE---SSEERKGPRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~---~~~~~~~~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      ..++|.+..++.|.+.+...   -......+.++-++|..|+|||.||+.+
T Consensus       566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~L  616 (852)
T TIGR03345       566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALAL  616 (852)
T ss_pred             CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHH
Confidence            36899999999998887432   1111256778999999999999999754

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=95.24  E-value=0.015  Score=50.96  Aligned_cols=23  Identities=30%  Similarity=0.408  Sum_probs=20.6

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      =.+++|+|..|.|||||++.+..
T Consensus       286 Ge~~~i~G~NGsGKSTLl~~l~G  308 (490)
T PRK10938        286 GEHWQIVGPNGAGKSTLLSLITG  308 (490)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcC
Confidence            35899999999999999999864

>PRK10646 ADP-binding protein; Provisional

Probab=95.21  E-value=0.038  Score=40.38  Aligned_cols=23  Identities=35%  Similarity=0.375  Sum_probs=20.2

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      -.||...|-=|+|||||+|.+..
T Consensus        28 g~vi~L~GdLGaGKTtf~rgl~~   50 (153)
T PRK10646         28 ATVIYLYGDLGAGKTTFSRGFLQ   50 (153)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            35999999999999999998753

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.19  E-value=0.031  Score=50.02  Aligned_cols=44  Identities=25%  Similarity=0.363  Sum_probs=35.8

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+++|-+.-++.|..++..+..     ...+-++|..|+||||+|+.+.
T Consensus        16 ~~iiGq~~v~~~L~~~i~~~~~-----~hayLf~Gp~G~GKtt~A~~la   59 (576)
T PRK14965         16 SDLTGQEHVSRTLQNAIDTGRV-----AHAFLFTGARGVGKTSTARILA   59 (576)
T ss_pred             HHccCcHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHHH
Confidence            3689999999999999875532     3566789999999999998764

>cd01859 MJ1464 MJ1464

Probab=95.19  E-value=0.049  Score=39.80  Aligned_cols=42  Identities=14%  Similarity=0.250  Sum_probs=28.8

Q ss_pred             echhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          181 GREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       181 G~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      |.+.-++.|.+.+-...    . ...+.++|..|+|||||...+.+.
T Consensus        83 gi~~L~~~l~~~~~~~~----~-~~~~~~ig~~~~Gkssl~~~l~~~  124 (156)
T cd01859          83 GTKILRRTIKELAKIDG----K-EGKVGVVGYPNVGKSSIINALKGR  124 (156)
T ss_pred             cHHHHHHHHHHHHhhcC----C-CcEEEEECCCCCCHHHHHHHHhCC
Confidence            55555556655553322    3 344599999999999999988754

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]

Probab=95.17  E-value=0.025  Score=46.91  Aligned_cols=36  Identities=36%  Similarity=0.456  Sum_probs=30.0

Q ss_pred             echhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHH
Q 037814          181 GREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQ  222 (229)
Q Consensus       181 G~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~  222 (229)
                      +|..+-..-+++|++++      +..|++.|.+|.|||-||-
T Consensus       228 prn~eQ~~ALdlLld~d------I~lV~L~G~AGtGKTlLAL  263 (436)
T COG1875         228 PRNAEQRVALDLLLDDD------IDLVSLGGKAGTGKTLLAL  263 (436)
T ss_pred             cccHHHHHHHHHhcCCC------CCeEEeeccCCccHhHHHH
Confidence            36677777788888755      8999999999999999884

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=95.13  E-value=0.039  Score=47.08  Aligned_cols=49  Identities=31%  Similarity=0.341  Sum_probs=33.1

Q ss_pred             CcceechhhHHHHHHHhh-------cC-CCCCC----CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          177 SEIFGREKEKNELVNRLL-------CE-SSEER----KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~-------~~-~~~~~----~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      ..++|.+..++.+...+.       .. .....    .....|-++|..|+|||+||+.+-
T Consensus        77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA  137 (413)
T TIGR00382        77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLA  137 (413)
T ss_pred             ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHH
Confidence            358999988887755441       10 00000    123578899999999999999875

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=95.12  E-value=0.017  Score=49.83  Aligned_cols=20  Identities=35%  Similarity=0.677  Sum_probs=18.7

Q ss_pred             EEEEEecCCCCcHHHHHHHH
Q 037814          205 RIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      .+++|+|..|.|||||||.+
T Consensus       363 ~~lgIIGPSgSGKSTLaR~l  382 (580)
T COG4618         363 EALGIIGPSGSGKSTLARLL  382 (580)
T ss_pred             ceEEEECCCCccHHHHHHHH
Confidence            58999999999999999986

>PRK03003 GTP-binding protein Der; Reviewed

Probab=95.11  E-value=0.042  Score=47.97  Aligned_cols=48  Identities=23%  Similarity=0.286  Sum_probs=33.7

Q ss_pred             eechhhHHHHHHHhhcCCCC--CCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          180 FGREKEKNELVNRLLCESSE--ERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       180 vG~~~~~~~l~~~L~~~~~~--~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .|.++-.+.|.+.+......  .......|+|+|-+|+|||||+..+.+.
T Consensus       185 ~gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~  234 (472)
T PRK03003        185 RGVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGE  234 (472)
T ss_pred             CCcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCC
Confidence            35666677777766442111  1245678999999999999999988765

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=95.11  E-value=0.037  Score=46.60  Aligned_cols=42  Identities=26%  Similarity=0.348  Sum_probs=34.7

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHH
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQF  223 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~  223 (229)
                      .+++|-+..++.|.+.+..+.-     ..-+-++|..|+||||||..
T Consensus        19 ~~iiGq~~~~~~L~~~~~~~rl-----~HA~Lf~Gp~G~GK~~lA~~   60 (365)
T PRK07471         19 TALFGHAAAEAALLDAYRSGRL-----HHAWLIGGPQGIGKATLAYR   60 (365)
T ss_pred             hhccChHHHHHHHHHHHHcCCC-----CceEEEECCCCCCHHHHHHH
Confidence            4689999999999998876542     34688999999999999965

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=95.10  E-value=0.019  Score=48.54  Aligned_cols=21  Identities=38%  Similarity=0.642  Sum_probs=19.6

Q ss_pred             EEEEEecCCCCcHHHHHHHHh
Q 037814          205 RIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+++|+|..|+|||||.+.+.
T Consensus        46 e~~~llGpsGsGKSTLLr~Ia   66 (377)
T PRK11607         46 EIFALLGASGCGKSTLLRMLA   66 (377)
T ss_pred             CEEEEECCCCCcHHHHHHHHh
Confidence            599999999999999999875

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=95.10  E-value=0.018  Score=46.95  Aligned_cols=24  Identities=38%  Similarity=0.483  Sum_probs=21.2

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhcC
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      -++|-+.|.+|.|||+|.+.++++
T Consensus       177 NRliLlhGPPGTGKTSLCKaLaQk  200 (423)
T KOG0744|consen  177 NRLILLHGPPGTGKTSLCKALAQK  200 (423)
T ss_pred             eeEEEEeCCCCCChhHHHHHHHHh
Confidence            478899999999999999998764

>PRK08116 hypothetical protein; Validated

Probab=95.07  E-value=0.018  Score=46.37  Aligned_cols=22  Identities=41%  Similarity=0.350  Sum_probs=19.8

Q ss_pred             EEEEecCCCCcHHHHHHHHhcC
Q 037814          206 IISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       206 Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      -+-++|-.|+|||+||..|++.
T Consensus       116 gl~l~G~~GtGKThLa~aia~~  137 (268)
T PRK08116        116 GLLLWGSVGTGKTYLAACIANE  137 (268)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999874

>PHA02244 ATPase-like protein

Probab=95.05  E-value=0.031  Score=46.80  Aligned_cols=36  Identities=19%  Similarity=0.231  Sum_probs=26.1

Q ss_pred             hhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          183 EKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       183 ~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ......+..|+..+.        -|-|+|..|+|||+||+.+.+
T Consensus       106 ~~~~~ri~r~l~~~~--------PVLL~GppGtGKTtLA~aLA~  141 (383)
T PHA02244        106 HYETADIAKIVNANI--------PVFLKGGAGSGKNHIAEQIAE  141 (383)
T ss_pred             HHHHHHHHHHHhcCC--------CEEEECCCCCCHHHHHHHHHH
Confidence            445556666665432        356799999999999999864

>PLN03073 ABC transporter F family; Provisional

Probab=95.04  E-value=0.018  Score=52.71  Aligned_cols=22  Identities=36%  Similarity=0.614  Sum_probs=20.2

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||.+.+..
T Consensus       536 e~i~LvG~NGsGKSTLLk~L~G  557 (718)
T PLN03073        536 SRIAMVGPNGIGKSTILKLISG  557 (718)
T ss_pred             CEEEEECCCCCcHHHHHHHHhC
Confidence            5999999999999999999864

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=95.03  E-value=0.039  Score=50.65  Aligned_cols=49  Identities=22%  Similarity=0.318  Sum_probs=34.2

Q ss_pred             eechhhHHHHHHHhhcCCCCC----CCCCEEEEEecCCCCcHHHHHHHHhcCC
Q 037814          180 FGREKEKNELVNRLLCESSEE----RKGPRIISLVGMGGIGKTTLAQFAYNND  228 (229)
Q Consensus       180 vG~~~~~~~l~~~L~~~~~~~----~~~~~Vi~IvG~gGvGKTTLa~~vy~d~  228 (229)
                      .|.++-++.|.+.|.......    ..+...|+|+|.+|+|||||...+.+++
T Consensus       422 ~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~  474 (712)
T PRK09518        422 RGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEE  474 (712)
T ss_pred             CCchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCcc
Confidence            356666777777765432111    1345789999999999999999887653

>cd01882 BMS1 Bms1

Probab=95.01  E-value=0.027  Score=44.10  Aligned_cols=26  Identities=38%  Similarity=0.603  Sum_probs=21.6

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ....+|+|+|..|+|||||++.+...
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~   62 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKN   62 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            34579999999999999999877643

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=95.00  E-value=0.039  Score=49.14  Aligned_cols=43  Identities=23%  Similarity=0.316  Sum_probs=35.7

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      .+++|.+.-.+.|..++..+..     ...+-++|..|+||||+|+.+
T Consensus        16 ~~viGq~~v~~~L~~~i~~~~~-----~hayLf~Gp~GtGKTt~Ak~l   58 (559)
T PRK05563         16 EDVVGQEHITKTLKNAIKQGKI-----SHAYLFSGPRGTGKTSAAKIF   58 (559)
T ss_pred             HhccCcHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHH
Confidence            3689999999999999976542     356678999999999999875

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=94.97  E-value=0.022  Score=48.23  Aligned_cols=22  Identities=32%  Similarity=0.552  Sum_probs=20.1

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|.|||||++.+..
T Consensus        51 ei~~I~G~nGsGKSTLlr~L~G   72 (382)
T TIGR03415        51 EICVLMGLSGSGKSSLLRAVNG   72 (382)
T ss_pred             CEEEEECCCCCcHHHHHHHHhC
Confidence            5899999999999999999864

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=94.96  E-value=0.038  Score=46.06  Aligned_cols=23  Identities=30%  Similarity=0.372  Sum_probs=20.3

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      -.-|-|+|..|+|||||++.+.+
T Consensus       162 ~~nilI~G~tGSGKTTll~aLl~  184 (344)
T PRK13851        162 RLTMLLCGPTGSGKTTMSKTLIS  184 (344)
T ss_pred             CCeEEEECCCCccHHHHHHHHHc
Confidence            36789999999999999998765

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=94.94  E-value=0.039  Score=50.20  Aligned_cols=43  Identities=23%  Similarity=0.346  Sum_probs=35.3

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      .+++|-+.-++.|..++..+.-     ...+-++|..|+||||+|+.+
T Consensus        18 ~dIiGQe~~v~~L~~aI~~~rl-----~HAYLF~GP~GtGKTt~AriL   60 (725)
T PRK07133         18 DDIVGQDHIVQTLKNIIKSNKI-----SHAYLFSGPRGTGKTSVAKIF   60 (725)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCC-----CeEEEEECCCCCcHHHHHHHH
Confidence            3689999999999999976532     356678999999999999876

>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.93  E-value=0.032  Score=47.76  Aligned_cols=25  Identities=60%  Similarity=1.047  Sum_probs=21.0

Q ss_pred             CCCCEEEEEecCCCCcHHH-HHHHHh
Q 037814          201 RKGPRIISLVGMGGIGKTT-LAQFAY  225 (229)
Q Consensus       201 ~~~~~Vi~IvG~gGvGKTT-La~~vy  225 (229)
                      .....||++||-.||||+| ||+.-|
T Consensus       375 ~krPYVi~fvGVNGVGKSTNLAKIay  400 (587)
T KOG0781|consen  375 RKRPYVISFVGVNGVGKSTNLAKIAY  400 (587)
T ss_pred             cCCCeEEEEEeecCccccchHHHHHH
Confidence            3678999999999999965 777766

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=94.92  E-value=0.049  Score=43.49  Aligned_cols=24  Identities=33%  Similarity=0.504  Sum_probs=21.9

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      +..-||+|-|..|+||+|+|+.+.
T Consensus        80 ~~pfIIgiaGsvavGKST~ar~L~  103 (283)
T COG1072          80 QRPFIIGIAGSVAVGKSTTARILQ  103 (283)
T ss_pred             CCCEEEEeccCccccHHHHHHHHH
Confidence            778999999999999999998764

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=94.92  E-value=0.043  Score=48.86  Aligned_cols=45  Identities=18%  Similarity=0.206  Sum_probs=36.9

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|-+.-+..|..++..+.-     ...+-++|..|+||||+|+.+-+
T Consensus        16 ~diiGqe~iv~~L~~~i~~~~i-----~hayLf~Gp~G~GKTt~Ar~lAk   60 (563)
T PRK06647         16 NSLEGQDFVVETLKHSIESNKI-----ANAYIFSGPRGVGKTSSARAFAR   60 (563)
T ss_pred             HHccCcHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999976532     45678999999999999988743

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=94.90  E-value=0.021  Score=51.17  Aligned_cols=22  Identities=36%  Similarity=0.619  Sum_probs=19.7

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      =..++|+|..|.|||||++.+.
T Consensus       369 G~~~aIvG~sGsGKSTLl~ll~  390 (582)
T PRK11176        369 GKTVALVGRSGSGKSTIANLLT  390 (582)
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999875

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=94.89  E-value=0.029  Score=48.33  Aligned_cols=25  Identities=28%  Similarity=0.417  Sum_probs=22.0

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ....+|.|+|.+|+||||+|..+.+
T Consensus       253 k~p~vil~~G~~G~GKSt~a~~LA~  277 (475)
T PRK12337        253 PRPLHVLIGGVSGVGKSVLASALAY  277 (475)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3579999999999999999998754

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=94.89  E-value=0.023  Score=49.89  Aligned_cols=22  Identities=32%  Similarity=0.718  Sum_probs=20.1

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|.|||||++.+..
T Consensus        51 EivgIiGpNGSGKSTLLkiLaG   72 (549)
T PRK13545         51 EIVGIIGLNGSGKSTLSNLIAG   72 (549)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhC
Confidence            5999999999999999998764

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=94.88  E-value=0.059  Score=46.61  Aligned_cols=24  Identities=33%  Similarity=0.249  Sum_probs=20.8

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhcC
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ..-+-|+|..|+|||+|++.+.+.
T Consensus       130 ~n~l~lyG~~G~GKTHLl~ai~~~  153 (440)
T PRK14088        130 YNPLFIYGGVGLGKTHLLQSIGNY  153 (440)
T ss_pred             CCeEEEEcCCCCcHHHHHHHHHHH
Confidence            445899999999999999998863

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=94.87  E-value=0.021  Score=52.20  Aligned_cols=22  Identities=32%  Similarity=0.584  Sum_probs=19.9

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      =..++|||..|+|||||++.+.
T Consensus       479 Ge~vaIvG~sGsGKSTLlklL~  500 (686)
T TIGR03797       479 GEFVAIVGPSGSGKSTLLRLLL  500 (686)
T ss_pred             CCEEEEECCCCCCHHHHHHHHh
Confidence            4689999999999999999874

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=94.86  E-value=0.22  Score=43.26  Aligned_cols=22  Identities=18%  Similarity=0.362  Sum_probs=19.6

Q ss_pred             EEEEecCCCCcHHHHHHHHhcC
Q 037814          206 IISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       206 Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .|+|+|..|+|||||...+...
T Consensus       217 kV~ivG~~nvGKSSLln~L~~~  238 (449)
T PRK05291        217 KVVIAGRPNVGKSSLLNALLGE  238 (449)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5799999999999999998764

>PRK06851 hypothetical protein; Provisional

Probab=94.84  E-value=0.43  Score=40.19  Aligned_cols=23  Identities=26%  Similarity=0.245  Sum_probs=21.0

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      -+++-|-|.+|+|||||++.|+.
T Consensus       214 ~~~~~i~G~pG~GKstl~~~i~~  236 (367)
T PRK06851        214 KNRYFLKGRPGTGKSTMLKKIAK  236 (367)
T ss_pred             ceEEEEeCCCCCcHHHHHHHHHH
Confidence            47899999999999999999875

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=94.83  E-value=0.043  Score=47.57  Aligned_cols=23  Identities=35%  Similarity=0.414  Sum_probs=20.3

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ..-+-|+|..|+|||+|++.+.+
T Consensus       141 ~npl~i~G~~G~GKTHLl~Ai~~  163 (450)
T PRK14087        141 YNPLFIYGESGMGKTHLLKAAKN  163 (450)
T ss_pred             cCceEEECCCCCcHHHHHHHHHH
Confidence            45688999999999999999876

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=94.81  E-value=0.024  Score=50.62  Aligned_cols=22  Identities=32%  Similarity=0.543  Sum_probs=19.7

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      -..++|||..|+|||||++.+.
T Consensus       355 Ge~vaiVG~sGsGKSTl~~LL~  376 (567)
T COG1132         355 GEKVAIVGPSGSGKSTLIKLLL  376 (567)
T ss_pred             CCEEEEECCCCCCHHHHHHHHh
Confidence            4689999999999999999874

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=94.79  E-value=0.077  Score=43.75  Aligned_cols=34  Identities=18%  Similarity=0.271  Sum_probs=25.5

Q ss_pred             hHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          185 EKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       185 ~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ....|+.+|..+        +-|-|.|..|+||||||+.+-.
T Consensus        53 ~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~   86 (327)
T TIGR01650        53 TTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAA   86 (327)
T ss_pred             HHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHH
Confidence            345566666432        3588999999999999998743

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=94.78  E-value=0.073  Score=46.38  Aligned_cols=44  Identities=25%  Similarity=0.338  Sum_probs=31.6

Q ss_pred             eechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcCC
Q 037814          180 FGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNND  228 (229)
Q Consensus       180 vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d~  228 (229)
                      ||.+..- .|..-|..+.    +-=+-|++||..|+||+||.+.+|-|.
T Consensus       397 F~y~~~~-~iy~~l~fgi----d~~srvAlVGPNG~GKsTLlKl~~gdl  440 (614)
T KOG0927|consen  397 FGYSDNP-MIYKKLNFGI----DLDSRVALVGPNGAGKSTLLKLITGDL  440 (614)
T ss_pred             cCCCCcc-hhhhhhhccc----CcccceeEecCCCCchhhhHHHHhhcc
Confidence            5555544 5655555443    223678999999999999999998763

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=94.77  E-value=0.051  Score=50.95  Aligned_cols=48  Identities=17%  Similarity=0.313  Sum_probs=36.6

Q ss_pred             cceechhhHHHHHHHhhcCCC---CCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          178 EIFGREKEKNELVNRLLCESS---EERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~---~~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .++|.+..++.|...+.....   +......++-++|..|+|||+||+.+-
T Consensus       566 ~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La  616 (852)
T TIGR03346       566 RVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALA  616 (852)
T ss_pred             ccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHH
Confidence            589999999999888864210   011345778899999999999999874

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PRK06921 hypothetical protein; Provisional

Probab=94.74  E-value=0.025  Score=45.44  Aligned_cols=24  Identities=42%  Similarity=0.487  Sum_probs=20.8

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhcC
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ..-+-++|..|+|||+|+..|.+.
T Consensus       117 ~~~l~l~G~~G~GKThLa~aia~~  140 (266)
T PRK06921        117 KNSIALLGQPGSGKTHLLTAAANE  140 (266)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            467889999999999999998753

>PLN02199 shikimate kinase

Probab=94.74  E-value=0.026  Score=45.78  Aligned_cols=22  Identities=45%  Similarity=0.635  Sum_probs=19.2

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +-|.++||.|+||||+++.+-+
T Consensus       103 ~~I~LIG~~GSGKSTVgr~LA~  124 (303)
T PLN02199        103 RSMYLVGMMGSGKTTVGKLMSK  124 (303)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999998754

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=94.73  E-value=0.043  Score=50.61  Aligned_cols=51  Identities=31%  Similarity=0.328  Sum_probs=35.1

Q ss_pred             CcceechhhHHHHHHHhhcCCCC-------CCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          177 SEIFGREKEKNELVNRLLCESSE-------ERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .++.|.+..++.|.+.+...-..       .-...+-|-++|..|+|||+||+.+.+.
T Consensus       453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e  510 (733)
T TIGR01243       453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE  510 (733)
T ss_pred             hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence            45788888888887765421000       0122345788999999999999998754

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=94.73  E-value=0.036  Score=44.53  Aligned_cols=38  Identities=29%  Similarity=0.305  Sum_probs=26.8

Q ss_pred             hHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          185 EKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       185 ~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ..+.+.++|...-    ..-..|.|.|..|+||||+++.+.+
T Consensus       112 ~~~~~~~~l~~~v----~~~~~ili~G~tGSGKTT~l~all~  149 (270)
T PF00437_consen  112 IPEEIAEFLRSAV----RGRGNILISGPTGSGKTTLLNALLE  149 (270)
T ss_dssp             CHHHHHHHHHHCH----HTTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             hHHHHHHHHhhcc----ccceEEEEECCCccccchHHHHHhh
Confidence            3445555554331    2348999999999999999988653

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=94.72  E-value=0.064  Score=46.12  Aligned_cols=48  Identities=27%  Similarity=0.431  Sum_probs=32.6

Q ss_pred             echhhHHHHHHHhhcCCCC--CCCCCEEEEEecCCCCcHHHHHHHHhcCC
Q 037814          181 GREKEKNELVNRLLCESSE--ERKGPRIISLVGMGGIGKTTLAQFAYNND  228 (229)
Q Consensus       181 G~~~~~~~l~~~L~~~~~~--~~~~~~Vi~IvG~gGvGKTTLa~~vy~d~  228 (229)
                      |.++-.+.+.+.|......  ...+.-.|+|+|.+|+|||||+..+..++
T Consensus       147 gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~  196 (429)
T TIGR03594       147 GIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEE  196 (429)
T ss_pred             ChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCC
Confidence            5566666777666432211  12334579999999999999999987643

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.71  E-value=0.045  Score=49.31  Aligned_cols=44  Identities=27%  Similarity=0.358  Sum_probs=35.5

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+++|.+.-+..|..++..+.-     ..-+-++|..|+||||+|+.+.
T Consensus        16 ~~liGq~~i~~~L~~~l~~~rl-----~~a~Lf~Gp~G~GKttlA~~lA   59 (620)
T PRK14948         16 DELVGQEAIATTLKNALISNRI-----APAYLFTGPRGTGKTSSARILA   59 (620)
T ss_pred             hhccChHHHHHHHHHHHHcCCC-----CceEEEECCCCCChHHHHHHHH
Confidence            3689999999999999876531     2456789999999999999874

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=94.70  E-value=0.053  Score=43.64  Aligned_cols=37  Identities=19%  Similarity=0.116  Sum_probs=27.6

Q ss_pred             hHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          185 EKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       185 ~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ..+.++..|...     ....-++|+|..|.|||||.+.+..
T Consensus        97 ~~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~  133 (270)
T TIGR02858        97 AADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLAR  133 (270)
T ss_pred             cHHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhC
Confidence            455556666533     2357899999999999999998764

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=94.70  E-value=0.027  Score=51.50  Aligned_cols=22  Identities=36%  Similarity=0.483  Sum_probs=19.4

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      -.||++||..|+||||++.++.
T Consensus       185 g~Vi~lVGpnGvGKTTTiaKLA  206 (767)
T PRK14723        185 GGVLALVGPTGVGKTTTTAKLA  206 (767)
T ss_pred             CeEEEEECCCCCcHHHHHHHHH
Confidence            4799999999999999887764

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=94.67  E-value=0.026  Score=50.19  Aligned_cols=23  Identities=35%  Similarity=0.515  Sum_probs=20.5

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      =..++|+|..|.|||||++.+..
T Consensus       349 G~~~aivG~sGsGKSTL~~ll~g  371 (547)
T PRK10522        349 GELLFLIGGNGSGKSTLAMLLTG  371 (547)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999999998853

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=94.65  E-value=0.044  Score=45.50  Aligned_cols=23  Identities=30%  Similarity=0.343  Sum_probs=19.7

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      -.-|.|+|..|+|||||++.+.+
T Consensus       160 ~~nili~G~tgSGKTTll~aL~~  182 (332)
T PRK13900        160 KKNIIISGGTSTGKTTFTNAALR  182 (332)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHh
Confidence            36799999999999999988653

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=94.64  E-value=0.03  Score=44.84  Aligned_cols=36  Identities=19%  Similarity=0.352  Sum_probs=27.2

Q ss_pred             hHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814          185 EKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       185 ~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      +.++|.+.+..+=    +.-+++-|.|.+|+|||||+.++
T Consensus        21 ~~~~~~~~~~GGi----p~gs~~lI~G~pGtGKT~l~~qf   56 (259)
T TIGR03878        21 EEGKIVRKPLGGI----PAYSVINITGVSDTGKSLMVEQF   56 (259)
T ss_pred             cccccccccCCCe----ECCcEEEEEcCCCCCHHHHHHHH
Confidence            3555655555443    55689999999999999999885

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=94.62  E-value=0.029  Score=42.21  Aligned_cols=22  Identities=41%  Similarity=0.388  Sum_probs=18.6

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .-+.++|..|+|||.||..+-+
T Consensus        48 ~~l~l~G~~G~GKThLa~ai~~   69 (178)
T PF01695_consen   48 ENLILYGPPGTGKTHLAVAIAN   69 (178)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEhhHhHHHHHHHHHHHH
Confidence            4689999999999999988754

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=94.61  E-value=0.022  Score=49.16  Aligned_cols=22  Identities=50%  Similarity=0.635  Sum_probs=19.0

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +--++||..|+|||||.+.|-+
T Consensus       107 rRYGLvGrNG~GKsTLLRaia~  128 (582)
T KOG0062|consen  107 RRYGLVGRNGIGKSTLLRAIAN  128 (582)
T ss_pred             cccceeCCCCCcHHHHHHHHHh
Confidence            3458999999999999999865

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=94.60  E-value=0.038  Score=48.64  Aligned_cols=25  Identities=20%  Similarity=0.386  Sum_probs=22.4

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ....+|.++|..|+||||+|+.+..
T Consensus       367 ~~p~LVil~G~pGSGKST~A~~l~~  391 (526)
T TIGR01663       367 APCEMVIAVGFPGAGKSHFCKKFFQ  391 (526)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            5678999999999999999998764

Note that the EC number for the kinase function is: 2.7.1.78

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=94.59  E-value=0.055  Score=47.71  Aligned_cols=43  Identities=26%  Similarity=0.316  Sum_probs=34.8

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      .+++|-+.-++.|..++..+.-     ..++-++|..|+||||+|+.+
T Consensus        14 deiiGqe~v~~~L~~~I~~grl-----~hayLf~Gp~G~GKTt~Ar~L   56 (535)
T PRK08451         14 DELIGQESVSKTLSLALDNNRL-----AHAYLFSGLRGSGKTSSARIF   56 (535)
T ss_pred             HHccCcHHHHHHHHHHHHcCCC-----CeeEEEECCCCCcHHHHHHHH
Confidence            3689999899999998865432     356689999999999999864

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=94.59  E-value=0.037  Score=48.44  Aligned_cols=23  Identities=39%  Similarity=0.561  Sum_probs=20.4

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHH
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      +..-+++|||.+|.|||||.+.+
T Consensus        67 PPPfIvavvGPpGtGKsTLirSl   89 (1077)
T COG5192          67 PPPFIVAVVGPPGTGKSTLIRSL   89 (1077)
T ss_pred             CCCeEEEeecCCCCChhHHHHHH
Confidence            55778899999999999999875

>TIGR02012 tigrfam_recA protein RecA

Probab=94.56  E-value=0.059  Score=44.44  Aligned_cols=24  Identities=46%  Similarity=0.481  Sum_probs=20.7

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      +.=+++-|+|..|+||||||-++.
T Consensus        53 p~G~iteI~G~~GsGKTtLaL~~~   76 (321)
T TIGR02012        53 PRGRIIEIYGPESSGKTTLALHAI   76 (321)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHH
Confidence            556899999999999999987753

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed

Probab=94.55  E-value=0.031  Score=46.23  Aligned_cols=25  Identities=24%  Similarity=0.361  Sum_probs=21.1

Q ss_pred             CCCEEEEE--ecCCCCcHHHHHHHHhc
Q 037814          202 KGPRIISL--VGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       202 ~~~~Vi~I--vG~gGvGKTTLa~~vy~  226 (229)
                      .++.||+|  ++.||.|||+++..+.+
T Consensus        47 ~~~pvIsVGNi~vGGtGKTP~v~~L~~   73 (325)
T PRK00652         47 APVPVIVVGNITVGGTGKTPVVIALAE   73 (325)
T ss_pred             CCCCEEEEcCeeCCCCChHHHHHHHHH
Confidence            34779999  99999999999987753

>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain

Probab=94.54  E-value=0.023  Score=45.62  Aligned_cols=23  Identities=43%  Similarity=0.508  Sum_probs=20.6

Q ss_pred             EEEEEecCCCCcHHHHHHHHhcC
Q 037814          205 RIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .-++|+|-.|+|||||++.+++.
T Consensus        70 Qr~~If~~~G~GKTtLa~~i~~~   92 (274)
T cd01133          70 GKIGLFGGAGVGKTVLIMELINN   92 (274)
T ss_pred             CEEEEecCCCCChhHHHHHHHHH
Confidence            56899999999999999998864

The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=94.54  E-value=0.12  Score=40.45  Aligned_cols=44  Identities=20%  Similarity=0.311  Sum_probs=36.4

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .-||+|.-.+++...++....    +. =|-|||..|+|||||...+|.
T Consensus        25 gyvGidtI~~Qm~~k~mk~GF----~F-NIMVVgqSglgkstlinTlf~   68 (336)
T KOG1547|consen   25 GYVGIDTIIEQMRKKTMKTGF----DF-NIMVVGQSGLGKSTLINTLFK   68 (336)
T ss_pred             ccccHHHHHHHHHHHHHhccC----ce-EEEEEecCCCCchhhHHHHHH
Confidence            469999999999999987663    23 456899999999999988775

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=94.54  E-value=0.029  Score=51.52  Aligned_cols=22  Identities=41%  Similarity=0.628  Sum_probs=19.8

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      =..++|+|..|+|||||++.+.
T Consensus       500 G~~vaIvG~SGsGKSTLlklL~  521 (708)
T TIGR01193       500 NSKTTIVGMSGSGKSTLAKLLV  521 (708)
T ss_pred             CCEEEEECCCCCCHHHHHHHHh
Confidence            3689999999999999999874

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=94.53  E-value=0.029  Score=51.55  Aligned_cols=24  Identities=38%  Similarity=0.584  Sum_probs=20.9

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHhc
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +=.+++|||..|.|||||++.+..
T Consensus       506 ~Ge~vaIvG~SGsGKSTLl~lL~g  529 (711)
T TIGR00958       506 PGEVVALVGPSGSGKSTVAALLQN  529 (711)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHh
Confidence            346899999999999999998753

>CHL00095 clpC Clp protease ATP binding subunit

Probab=94.51  E-value=0.057  Score=50.43  Aligned_cols=48  Identities=17%  Similarity=0.260  Sum_probs=35.1

Q ss_pred             CcceechhhHHHHHHHhhcCC---CCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814          177 SEIFGREKEKNELVNRLLCES---SEERKGPRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~---~~~~~~~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      ..++|-+..++.|...+....   .+....+.++-++|..|+|||+||+.+
T Consensus       509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~L  559 (821)
T CHL00095        509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKAL  559 (821)
T ss_pred             CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHH
Confidence            458899999998887774221   111244567789999999999999875

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=94.51  E-value=0.03  Score=48.61  Aligned_cols=22  Identities=32%  Similarity=0.539  Sum_probs=20.0

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .-|+|+|..|+|||||+|.+..
T Consensus       365 EkvAIlG~SGsGKSTllqLl~~  386 (573)
T COG4987         365 EKVAILGRSGSGKSTLLQLLAG  386 (573)
T ss_pred             CeEEEECCCCCCHHHHHHHHHh
Confidence            5799999999999999999874

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=94.49  E-value=0.061  Score=44.40  Aligned_cols=24  Identities=46%  Similarity=0.480  Sum_probs=21.0

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      +.-+++-|+|.+|+||||||-+++
T Consensus        53 p~G~iteI~Gp~GsGKTtLal~~~   76 (325)
T cd00983          53 PKGRIIEIYGPESSGKTTLALHAI   76 (325)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHH
Confidence            556799999999999999998865

RecA couples ATP hydrolysis to DNA strand exchange.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=94.48  E-value=0.029  Score=50.28  Aligned_cols=23  Identities=39%  Similarity=0.502  Sum_probs=20.3

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      =..++|||..|.|||||++.+..
T Consensus       376 G~~vaIvG~SGsGKSTL~~lL~g  398 (588)
T PRK11174        376 GQRIALVGPSGAGKTSLLNALLG  398 (588)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            47899999999999999998753

>PRK09866 hypothetical protein; Provisional

Probab=94.48  E-value=0.053  Score=48.53  Aligned_cols=41  Identities=22%  Similarity=0.192  Sum_probs=31.1

Q ss_pred             hhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          183 EKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       183 ~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ......|.+.|..-.    ..-.+++|+|..|.|||||++.++..
T Consensus        52 ~~ri~~L~~~L~Kv~----~~~~~valvG~sgaGKSTLiNaL~G~   92 (741)
T PRK09866         52 AERHAMLNNELRKIS----RLEMVLAIVGTMKAGKSTTINAIVGT   92 (741)
T ss_pred             HHHHHHHHHHHHHHh----ccceEEEEECCCCCCHHHHHHHHhCC
Confidence            555666666665443    33489999999999999999998753

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=94.46  E-value=0.031  Score=51.33  Aligned_cols=22  Identities=36%  Similarity=0.573  Sum_probs=19.8

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      =..|+|||..|+|||||++.+.
T Consensus       505 Ge~vaIvG~sGsGKSTLlklL~  526 (710)
T TIGR03796       505 GQRVALVGGSGSGKSTIAKLVA  526 (710)
T ss_pred             CCEEEEECCCCCCHHHHHHHHh
Confidence            3689999999999999999874

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK06835 DNA replication protein DnaC; Validated

Probab=94.44  E-value=0.031  Score=46.30  Aligned_cols=22  Identities=27%  Similarity=0.326  Sum_probs=19.7

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .-+-++|..|+|||+||..|.+
T Consensus       184 ~~Lll~G~~GtGKThLa~aIa~  205 (329)
T PRK06835        184 ENLLFYGNTGTGKTFLSNCIAK  205 (329)
T ss_pred             CcEEEECCCCCcHHHHHHHHHH
Confidence            5688999999999999998865

>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase

Probab=94.43  E-value=0.05  Score=41.94  Aligned_cols=22  Identities=27%  Similarity=0.318  Sum_probs=17.9

Q ss_pred             CCCEEEEEec-CCCCcHHHHHHH
Q 037814          202 KGPRIISLVG-MGGIGKTTLAQF  223 (229)
Q Consensus       202 ~~~~Vi~IvG-~gGvGKTTLa~~  223 (229)
                      ...++|+|+| -||+||||++-.
T Consensus        33 ~~~~vi~v~s~kgG~GkSt~a~n   55 (207)
T TIGR03018        33 KNNNLIMVTSSLPGEGKSFTAIN   55 (207)
T ss_pred             CCCeEEEEECCCCCCCHHHHHHH
Confidence            3468999997 699999997764

Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.42  E-value=0.057  Score=48.36  Aligned_cols=44  Identities=27%  Similarity=0.300  Sum_probs=34.6

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+++|-+..+..|..++..+.     -...+-++|..|+||||+|+.+-
T Consensus        16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilA   59 (624)
T PRK14959         16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFA   59 (624)
T ss_pred             HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHH
Confidence            368898888888888886543     13567789999999999998764

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=94.41  E-value=0.032  Score=49.98  Aligned_cols=23  Identities=35%  Similarity=0.501  Sum_probs=20.6

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      =..++|||..|.|||||++.+..
T Consensus       366 G~~~aivG~sGsGKSTL~~ll~g  388 (574)
T PRK11160        366 GEKVALLGRTGCGKSTLLQLLTR  388 (574)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            46899999999999999998864

>PTZ00035 Rad51 protein; Provisional

Probab=94.41  E-value=0.061  Score=44.80  Aligned_cols=24  Identities=29%  Similarity=0.250  Sum_probs=21.4

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      +.-.++-|+|..|+|||||+..++
T Consensus       116 ~~G~iteI~G~~GsGKT~l~~~l~  139 (337)
T PTZ00035        116 ETGSITELFGEFRTGKTQLCHTLC  139 (337)
T ss_pred             CCCeEEEEECCCCCchhHHHHHHH
Confidence            557899999999999999998875

>PRK08181 transposase; Validated

Probab=94.38  E-value=0.032  Score=44.90  Aligned_cols=21  Identities=33%  Similarity=0.221  Sum_probs=18.6

Q ss_pred             EEEEecCCCCcHHHHHHHHhc
Q 037814          206 IISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       206 Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      -+-++|..|+|||.||..+.+
T Consensus       108 nlll~Gp~GtGKTHLa~Aia~  128 (269)
T PRK08181        108 NLLLFGPPGGGKSHLAAAIGL  128 (269)
T ss_pred             eEEEEecCCCcHHHHHHHHHH
Confidence            488999999999999998754

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=94.37  E-value=0.034  Score=49.43  Aligned_cols=23  Identities=30%  Similarity=0.572  Sum_probs=20.5

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      =..++|+|..|.|||||++.+..
T Consensus       344 G~~~~ivG~sGsGKSTL~~ll~g  366 (544)
T TIGR01842       344 GEALAIIGPSGSGKSTLARLIVG  366 (544)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            46999999999999999998753

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=94.37  E-value=0.034  Score=49.91  Aligned_cols=22  Identities=32%  Similarity=0.537  Sum_probs=19.8

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      =..++|+|..|.|||||++.+.
T Consensus       361 G~~v~IvG~sGsGKSTLl~lL~  382 (588)
T PRK13657        361 GQTVAIVGPTGAGKSTLINLLQ  382 (588)
T ss_pred             CCEEEEECCCCCCHHHHHHHHh
Confidence            3689999999999999999875

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=94.36  E-value=0.032  Score=47.53  Aligned_cols=23  Identities=35%  Similarity=0.593  Sum_probs=20.1

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      -+-|+|||..||||+||.+.+.-
T Consensus       613 dSRiaIVGPNGVGKSTlLkLL~G  635 (807)
T KOG0066|consen  613 DSRIAIVGPNGVGKSTLLKLLIG  635 (807)
T ss_pred             cceeEEECCCCccHHHHHHHHhc
Confidence            46899999999999999998753

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=94.35  E-value=0.033  Score=49.29  Aligned_cols=24  Identities=33%  Similarity=0.491  Sum_probs=20.7

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHhc
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +=..++|+|..|.|||||++.+..
T Consensus       347 ~G~~~~ivG~sGsGKSTL~~ll~g  370 (529)
T TIGR02857       347 PGERVALVGPSGAGKSTLLNLLLG  370 (529)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhc
Confidence            346899999999999999998753

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=94.35  E-value=0.034  Score=50.93  Aligned_cols=22  Identities=27%  Similarity=0.469  Sum_probs=19.7

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      =..++|||..|.|||||++.+.
T Consensus       491 G~~iaIvG~sGsGKSTLlklL~  512 (694)
T TIGR03375       491 GEKVAIIGRIGSGKSTLLKLLL  512 (694)
T ss_pred             CCEEEEECCCCCCHHHHHHHHh
Confidence            3689999999999999999874

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PTZ00494 tuzin-like protein; Provisional

Probab=94.33  E-value=0.76  Score=39.75  Aligned_cols=49  Identities=27%  Similarity=0.285  Sum_probs=38.6

Q ss_pred             CCCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          175 DESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       175 ~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ....++.|+.+-.-+.+.|..-..   ...+|+.+-|.-|.||++|.+..-.
T Consensus       369 ~~~~~V~R~~eE~~vRqvL~qld~---aHPRIvV~TG~~GcGKSslcRsAvr  417 (664)
T PTZ00494        369 AEAFEVRREDEEALVRSVLTQMAP---SHPRIVALAGGSGGGRCVPCRRAVR  417 (664)
T ss_pred             ccccccchhhHHHHHHHHHhhccC---CCCcEEEEecCCCCCchHHHHHHHH
Confidence            445688898888888887765443   5689999999999999999987543

>PHA02624 large T antigen; Provisional

Probab=94.32  E-value=0.081  Score=47.07  Aligned_cols=39  Identities=21%  Similarity=0.169  Sum_probs=29.9

Q ss_pred             hhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          184 KEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       184 ~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+...+.+.++.+-    ++-+++.++|..|.|||||+..+.+
T Consensus       415 ~~~~~~lk~~l~gi----PKk~~il~~GPpnTGKTtf~~sLl~  453 (647)
T PHA02624        415 DVIYDILKLIVENV----PKRRYWLFKGPVNSGKTTLAAALLD  453 (647)
T ss_pred             HHHHHHHHHHHhcC----CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            44555555555554    6678999999999999999998754

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=94.31  E-value=0.034  Score=49.69  Aligned_cols=23  Identities=26%  Similarity=0.478  Sum_probs=20.4

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      =..++|+|..|.|||||++.+..
T Consensus       341 G~~~~ivG~sGsGKSTLl~ll~g  363 (569)
T PRK10789        341 GQMLGICGPTGSGKSTLLSLIQR  363 (569)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            46899999999999999998753

>COG1162 Predicted GTPases [General function prediction only]

Probab=94.30  E-value=0.056  Score=43.84  Aligned_cols=33  Identities=33%  Similarity=0.471  Sum_probs=25.9

Q ss_pred             hhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          184 KEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       184 ~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      ...+.|..+|.+         ++..++|..||||+||...+-
T Consensus       153 ~~~~~l~~~l~~---------~~svl~GqSGVGKSSLiN~L~  185 (301)
T COG1162         153 DGLEELAELLAG---------KITVLLGQSGVGKSTLINALL  185 (301)
T ss_pred             ccHHHHHHHhcC---------CeEEEECCCCCcHHHHHHhhC
Confidence            456777777742         478899999999999998763

>TIGR02236 recomb_radA DNA repair and recombination protein RadA

Probab=94.30  E-value=0.079  Score=43.54  Aligned_cols=24  Identities=25%  Similarity=0.277  Sum_probs=21.1

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      +.-.|+-|+|.+|+|||||+-+++
T Consensus        93 ~~g~i~ei~G~~g~GKT~l~~~~~  116 (310)
T TIGR02236        93 ETQAITEVFGEFGSGKTQICHQLA  116 (310)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            446899999999999999998875

This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=94.26  E-value=0.04  Score=48.25  Aligned_cols=22  Identities=41%  Similarity=0.590  Sum_probs=20.3

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|||..|+||||+++.+..
T Consensus        36 E~lgIvGESGsGKSt~a~~i~g   57 (539)
T COG1123          36 EILGIVGESGSGKSTLALALMG   57 (539)
T ss_pred             cEEEEEcCCCCCHHHHHHHHhc
Confidence            5999999999999999999864

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=94.24  E-value=0.036  Score=49.75  Aligned_cols=22  Identities=36%  Similarity=0.552  Sum_probs=20.0

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      =..++|+|..|.|||||++.+.
T Consensus       361 G~~~~ivG~sGsGKSTL~~ll~  382 (585)
T TIGR01192       361 GQTVAIVGPTGAGKTTLINLLQ  382 (585)
T ss_pred             CCEEEEECCCCCCHHHHHHHHc
Confidence            4789999999999999999874

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=94.22  E-value=0.11  Score=43.03  Aligned_cols=52  Identities=25%  Similarity=0.274  Sum_probs=36.8

Q ss_pred             CcceechhhHHHHHHHhhcCCCC-------CCCCCEEEEEecCCCCcHHHHHHHHhcCC
Q 037814          177 SEIFGREKEKNELVNRLLCESSE-------ERKGPRIISLVGMGGIGKTTLAQFAYNND  228 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~Vi~IvG~gGvGKTTLa~~vy~d~  228 (229)
                      .++=|.+...++|.+-..-.--+       .-+..+=|-.+|.+|.|||-||+.|-|..
T Consensus       151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T  209 (406)
T COG1222         151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT  209 (406)
T ss_pred             hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence            35678898888887764221100       12345667799999999999999998764

>PRK13894 conjugal transfer ATPase TrbB; Provisional

Probab=94.22  E-value=0.071  Score=44.02  Aligned_cols=22  Identities=45%  Similarity=0.533  Sum_probs=19.3

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .-|-|+|..|+|||||++.+.+
T Consensus       149 ~~ilI~G~tGSGKTTll~aL~~  170 (319)
T PRK13894        149 RNILVIGGTGSGKTTLVNAIIN  170 (319)
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            5788899999999999998764

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=94.21  E-value=0.1  Score=46.61  Aligned_cols=24  Identities=25%  Similarity=0.271  Sum_probs=20.8

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhcC
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ...+-|+|-.|+|||.|++.|++.
T Consensus       314 ~NpL~LyG~sGsGKTHLL~AIa~~  337 (617)
T PRK14086        314 YNPLFIYGESGLGKTHLLHAIGHY  337 (617)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHH
Confidence            345899999999999999998873

>PRK05973 replicative DNA helicase; Provisional

Probab=94.18  E-value=0.065  Score=42.24  Aligned_cols=22  Identities=27%  Similarity=0.175  Sum_probs=19.1

Q ss_pred             CCEEEEEecCCCCcHHHHHHHH
Q 037814          203 GPRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      .-.++-|.|.+|+|||||+.++
T Consensus        63 ~Gsl~LIaG~PG~GKT~lalqf   84 (237)
T PRK05973         63 PGDLVLLGARPGHGKTLLGLEL   84 (237)
T ss_pred             CCCEEEEEeCCCCCHHHHHHHH
Confidence            3468899999999999999875

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=94.14  E-value=0.066  Score=44.74  Aligned_cols=22  Identities=27%  Similarity=0.342  Sum_probs=19.7

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+|.|.|..|+||||+++.+.+
T Consensus       123 g~ili~G~tGSGKTT~l~al~~  144 (343)
T TIGR01420       123 GLILVTGPTGSGKSTTLASMID  144 (343)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999998654

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional

Probab=94.09  E-value=0.066  Score=49.03  Aligned_cols=47  Identities=21%  Similarity=0.345  Sum_probs=35.9

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ..++|....+..+++.+..-.    ..-.-|-|+|-.|+|||++|+.|++.
T Consensus       376 ~~liG~S~~~~~~~~~~~~~a----~~~~pVLI~GE~GTGK~~lA~~ih~~  422 (686)
T PRK15429        376 GEIIGRSEAMYSVLKQVEMVA----QSDSTVLILGETGTGKELIARAIHNL  422 (686)
T ss_pred             cceeecCHHHHHHHHHHHHHh----CCCCCEEEECCCCcCHHHHHHHHHHh
Confidence            368999888888876665322    22346779999999999999999863

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=94.05  E-value=0.068  Score=39.09  Aligned_cols=25  Identities=16%  Similarity=0.383  Sum_probs=21.5

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .-..++|+|..|+||+||...+...
T Consensus        99 ~~~~~~~~G~~~~GKstlin~l~~~  123 (155)
T cd01849          99 KSITVGVIGYPNVGKSSVINALLNK  123 (155)
T ss_pred             cCcEEEEEccCCCCHHHHHHHHHcc
Confidence            3567889999999999999988764

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=94.04  E-value=0.043  Score=48.94  Aligned_cols=23  Identities=39%  Similarity=0.586  Sum_probs=20.5

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      =..++|+|..|.|||||++.+..
T Consensus       368 G~~~aivG~sGsGKSTl~~ll~g  390 (555)
T TIGR01194       368 GDIVFIVGENGCGKSTLAKLFCG  390 (555)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            46999999999999999998853

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>COG4240 Predicted kinase [General function prediction only]

Probab=94.02  E-value=0.056  Score=42.04  Aligned_cols=25  Identities=32%  Similarity=0.530  Sum_probs=22.6

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ...-+++|.|.-|+|||||+-.||+
T Consensus        48 grPli~gisGpQGSGKStls~~i~~   72 (300)
T COG4240          48 GRPLIVGISGPQGSGKSTLSALIVR   72 (300)
T ss_pred             CCceEEEeecCCCCchhhHHHHHHH
Confidence            4578999999999999999999886

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=93.94  E-value=0.086  Score=47.50  Aligned_cols=43  Identities=26%  Similarity=0.359  Sum_probs=35.4

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      .+++|-+.-++.|..++..+.-     ...+-++|..|+||||+|+.+
T Consensus        17 ~~viGq~~~~~~L~~~i~~~~l-----~hayLf~Gp~G~GKtt~A~~l   59 (614)
T PRK14971         17 ESVVGQEALTTTLKNAIATNKL-----AHAYLFCGPRGVGKTTCARIF   59 (614)
T ss_pred             HHhcCcHHHHHHHHHHHHcCCC-----CeeEEEECCCCCCHHHHHHHH
Confidence            3689999999999999876542     356789999999999999764

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=93.93  E-value=0.048  Score=49.66  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=20.4

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      =.+++|+|..|+|||||++.+..
T Consensus       478 Ge~~~IvG~nGsGKSTLl~lL~G  500 (659)
T TIGR00954       478 GNHLLICGPNGCGKSSLFRILGE  500 (659)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            35899999999999999998764

>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]

Probab=93.92  E-value=0.19  Score=39.85  Aligned_cols=52  Identities=29%  Similarity=0.330  Sum_probs=35.2

Q ss_pred             CcceechhhHHHHHHHhhcCCCC-------CCCCCEEEEEecCCCCcHHHHHHHHhcCC
Q 037814          177 SEIFGREKEKNELVNRLLCESSE-------ERKGPRIISLVGMGGIGKTTLAQFAYNND  228 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~Vi~IvG~gGvGKTTLa~~vy~d~  228 (229)
                      .++-|.+-.+++|.+...-.-.+       .-+..+=+-.+|.+|.|||-||+.|-|+.
T Consensus       155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t  213 (408)
T KOG0727|consen  155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT  213 (408)
T ss_pred             cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc
Confidence            45778887777776653211000       11334556799999999999999998874

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=93.90  E-value=0.053  Score=44.25  Aligned_cols=22  Identities=32%  Similarity=0.644  Sum_probs=19.8

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+..|.|+.|+||+||++.++.
T Consensus        55 eIfViMGLSGSGKSTLvR~~Nr   76 (386)
T COG4175          55 EIFVIMGLSGSGKSTLVRLLNR   76 (386)
T ss_pred             eEEEEEecCCCCHHHHHHHHhc
Confidence            5888999999999999999863

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=93.90  E-value=0.048  Score=48.69  Aligned_cols=22  Identities=36%  Similarity=0.555  Sum_probs=19.7

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      =..++|+|..|.|||||++.+.
T Consensus       358 G~~v~IvG~sGsGKSTLl~lL~  379 (571)
T TIGR02203       358 GETVALVGRSGSGKSTLVNLIP  379 (571)
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999999874

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=93.90  E-value=0.048  Score=48.95  Aligned_cols=22  Identities=41%  Similarity=0.617  Sum_probs=19.9

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      =..++|+|..|.|||||++.+.
T Consensus       367 Ge~iaIvG~SGsGKSTLl~lL~  388 (592)
T PRK10790        367 RGFVALVGHTGSGKSTLASLLM  388 (592)
T ss_pred             CCEEEEECCCCCCHHHHHHHHh
Confidence            4689999999999999999875

>PRK00093 GTP-binding protein Der; Reviewed

Probab=93.87  E-value=0.11  Score=44.68  Aligned_cols=26  Identities=23%  Similarity=0.451  Sum_probs=22.0

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ...-.|+|+|.+|+|||||+..+...
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~  196 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGE  196 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCC
Confidence            34678999999999999999987654

>PRK09354 recA recombinase A; Provisional

Probab=93.87  E-value=0.099  Score=43.57  Aligned_cols=24  Identities=42%  Similarity=0.469  Sum_probs=21.0

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      +.=+++=|+|..|+|||||+-++.
T Consensus        58 p~G~IteI~G~~GsGKTtLal~~~   81 (349)
T PRK09354         58 PRGRIVEIYGPESSGKTTLALHAI   81 (349)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHH
Confidence            556899999999999999998764

>PLN02772 guanylate kinase

Probab=93.86  E-value=0.06  Score=45.42  Aligned_cols=26  Identities=27%  Similarity=0.469  Sum_probs=22.6

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ...++|.|+|..|+||+||++.+..+
T Consensus       133 ~~~k~iVlsGPSGvGKsTL~~~L~~~  158 (398)
T PLN02772        133 NAEKPIVISGPSGVGKGTLISMLMKE  158 (398)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhhh
Confidence            35789999999999999999998653

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=93.84  E-value=0.052  Score=48.56  Aligned_cols=23  Identities=39%  Similarity=0.573  Sum_probs=20.2

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      =..++|+|..|.|||||++.+..
T Consensus       366 Ge~i~IvG~sGsGKSTLlklL~g  388 (576)
T TIGR02204       366 GETVALVGPSGAGKSTLFQLLLR  388 (576)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            36899999999999999998753

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK04301 radA DNA repair and recombination protein RadA; Validated

Probab=93.84  E-value=0.099  Score=43.15  Aligned_cols=24  Identities=25%  Similarity=0.268  Sum_probs=21.2

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      +.-.++-|+|.+|+|||+|+.++.
T Consensus       100 ~~g~vtei~G~~GsGKT~l~~~~~  123 (317)
T PRK04301        100 ETQSITEFYGEFGSGKTQICHQLA  123 (317)
T ss_pred             cCCcEEEEECCCCCCHhHHHHHHH
Confidence            456899999999999999998875

>PRK13765 ATP-dependent protease Lon; Provisional

Probab=93.82  E-value=0.078  Score=47.83  Aligned_cols=42  Identities=21%  Similarity=0.366  Sum_probs=33.2

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ++++|.+..++.|...+...        ..+-|+|..|+||||||+.+.+
T Consensus        31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~   72 (637)
T PRK13765         31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAE   72 (637)
T ss_pred             HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHH
Confidence            35889888888887766533        2588999999999999998653

>PRK08939 primosomal protein DnaI; Reviewed

Probab=93.81  E-value=0.092  Score=43.11  Aligned_cols=45  Identities=20%  Similarity=0.124  Sum_probs=30.5

Q ss_pred             echhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          181 GREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       181 G~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ++........+|+..-..  .+..+-+-++|..|+|||.||..+.+.
T Consensus       135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~  179 (306)
T PRK08939        135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANE  179 (306)
T ss_pred             HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            444455556666653221  123456889999999999999998763

>TIGR02239 recomb_RAD51 DNA repair protein RAD51

Probab=93.81  E-value=0.085  Score=43.55  Aligned_cols=24  Identities=25%  Similarity=0.210  Sum_probs=21.5

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      +.-.++-|+|.+|+|||||+..++
T Consensus        94 ~~g~i~~i~G~~g~GKT~l~~~~~  117 (316)
T TIGR02239        94 ETGSITEIFGEFRTGKTQLCHTLA  117 (316)
T ss_pred             CCCeEEEEECCCCCCcCHHHHHHH
Confidence            557899999999999999998875

This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).

>PLN03211 ABC transporter G-25; Provisional

Probab=93.79  E-value=0.055  Score=49.22  Aligned_cols=23  Identities=30%  Similarity=0.460  Sum_probs=20.7

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      =.+++|+|..|.|||||.+.+..
T Consensus        94 Ge~~aI~GpnGaGKSTLL~iLaG  116 (659)
T PLN03211         94 GEILAVLGPSGSGKSTLLNALAG  116 (659)
T ss_pred             CEEEEEECCCCCCHHHHHHHHhC
Confidence            46999999999999999998864

>cd01856 YlqF YlqF

Probab=93.79  E-value=0.17  Score=37.62  Aligned_cols=24  Identities=25%  Similarity=0.283  Sum_probs=20.5

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhcC
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ...+.++|..|+|||||...+.+.
T Consensus       115 ~~~~~~~G~~~vGKstlin~l~~~  138 (171)
T cd01856         115 GIRAMVVGIPNVGKSTLINRLRGK  138 (171)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCC
Confidence            356889999999999999988753

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional

Probab=93.76  E-value=0.093  Score=46.29  Aligned_cols=48  Identities=19%  Similarity=0.306  Sum_probs=37.8

Q ss_pred             CCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          176 ESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       176 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ...++|....+.++.+.+..-.    ..-.-|-|+|-.|+|||++|+.|++.
T Consensus       186 ~~~iig~s~~~~~~~~~i~~~a----~~~~pVlI~Ge~GtGK~~~A~~ih~~  233 (509)
T PRK05022        186 EGEMIGQSPAMQQLKKEIEVVA----ASDLNVLILGETGVGKELVARAIHAA  233 (509)
T ss_pred             CCceeecCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHHh
Confidence            3568999999988888876543    22346679999999999999999863

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=93.71  E-value=0.27  Score=43.96  Aligned_cols=51  Identities=31%  Similarity=0.296  Sum_probs=34.6

Q ss_pred             CcceechhhHHHHHHHhhcCCCC-------CCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          177 SEIFGREKEKNELVNRLLCESSE-------ERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      +++-|.++-+.+|.+.....-.+       .-...+=|-.+|.+|+||||+|+.+-|.
T Consensus       434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne  491 (693)
T KOG0730|consen  434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE  491 (693)
T ss_pred             hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh
Confidence            35666887777776554432211       1134566779999999999999998653

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=93.68  E-value=0.081  Score=43.57  Aligned_cols=24  Identities=25%  Similarity=0.231  Sum_probs=20.8

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      +.-+|+-|+|..|+|||+|+.+++
T Consensus        94 ~~G~iteI~G~~GsGKTql~lqla  117 (313)
T TIGR02238        94 ESMSITEVFGEFRCGKTQLSHTLC  117 (313)
T ss_pred             cCCeEEEEECCCCCCcCHHHHHHH
Confidence            456899999999999999998754

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=93.68  E-value=0.05  Score=43.45  Aligned_cols=23  Identities=39%  Similarity=0.423  Sum_probs=20.0

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ..=+.++|.+|+|||.||..+-|
T Consensus       105 ~~nl~l~G~~G~GKThLa~Ai~~  127 (254)
T COG1484         105 GENLVLLGPPGVGKTHLAIAIGN  127 (254)
T ss_pred             CCcEEEECCCCCcHHHHHHHHHH
Confidence            46788999999999999988755

>PRK12608 transcription termination factor Rho; Provisional

Probab=93.66  E-value=0.054  Score=45.45  Aligned_cols=36  Identities=25%  Similarity=0.130  Sum_probs=26.1

Q ss_pred             HHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          186 KNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       186 ~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ..++++.|..-.    .+ .-+.|+|-.|+|||||++.+.+
T Consensus       120 ~~RvID~l~PiG----kG-QR~LIvG~pGtGKTTLl~~la~  155 (380)
T PRK12608        120 SMRVVDLVAPIG----KG-QRGLIVAPPRAGKTVLLQQIAA  155 (380)
T ss_pred             hHhhhhheeecC----CC-ceEEEECCCCCCHHHHHHHHHH
Confidence            345777776432    22 3558999999999999998654

>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase

Probab=93.66  E-value=0.11  Score=43.27  Aligned_cols=37  Identities=22%  Similarity=0.224  Sum_probs=26.9

Q ss_pred             hhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          183 EKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       183 ~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ..+...++..+...       -.-|.|.|..|.|||||++.+..
T Consensus       164 ~~~~~~~L~~~v~~-------~~~ili~G~tGsGKTTll~al~~  200 (340)
T TIGR03819       164 PPGVARLLRAIVAA-------RLAFLISGGTGSGKTTLLSALLA  200 (340)
T ss_pred             CHHHHHHHHHHHhC-------CCeEEEECCCCCCHHHHHHHHHc
Confidence            34445555555533       36899999999999999997754

Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=93.64  E-value=0.37  Score=41.03  Aligned_cols=49  Identities=20%  Similarity=0.196  Sum_probs=31.4

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      +-++|-.+....-...-....+  ......+=|||-.|+|||.|++.+.|.
T Consensus        88 nFv~g~~N~~A~aa~~~va~~~--g~~~nplfi~G~~GlGKTHLl~Aign~  136 (408)
T COG0593          88 NFVVGPSNRLAYAAAKAVAENP--GGAYNPLFIYGGVGLGKTHLLQAIGNE  136 (408)
T ss_pred             heeeCCchHHHHHHHHHHHhcc--CCcCCcEEEECCCCCCHHHHHHHHHHH
Confidence            4466755444333222222211  134788999999999999999999863

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=93.63  E-value=0.049  Score=40.59  Aligned_cols=20  Identities=35%  Similarity=0.582  Sum_probs=17.2

Q ss_pred             EEEEEecCCCCcHHHHHHHH
Q 037814          205 RIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      --|+|||..|+||+||.-..
T Consensus        37 e~vaiVG~SGSGKSTLl~vl   56 (228)
T COG4181          37 ETVAIVGPSGSGKSTLLAVL   56 (228)
T ss_pred             ceEEEEcCCCCcHHhHHHHH
Confidence            47999999999999997543

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=93.63  E-value=0.15  Score=37.03  Aligned_cols=38  Identities=32%  Similarity=0.251  Sum_probs=26.2

Q ss_pred             hhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          184 KEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       184 ~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      ++..++-+.|...-    +.-.||.+-|-=|.|||||+|-+-
T Consensus         9 ~~t~~lg~~l~~~l----~~g~Vv~L~GdLGAGKTtf~rgi~   46 (149)
T COG0802           9 EATLALGERLAEAL----KAGDVVLLSGDLGAGKTTLVRGIA   46 (149)
T ss_pred             HHHHHHHHHHHhhC----CCCCEEEEEcCCcCChHHHHHHHH
Confidence            34444444443322    334799999999999999999763

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=93.60  E-value=0.069  Score=42.98  Aligned_cols=21  Identities=38%  Similarity=0.512  Sum_probs=19.0

Q ss_pred             CEEEEEecCCCCcHHHHHHHH
Q 037814          204 PRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      ..+++++|.+|+||||+++.+
T Consensus        75 ~~~i~~~G~~g~GKTtl~~~l   95 (270)
T PRK06731         75 VQTIALIGPTGVGKTTTLAKM   95 (270)
T ss_pred             CCEEEEECCCCCcHHHHHHHH
Confidence            479999999999999998876

>smart00350 MCM minichromosome maintenance proteins

Probab=93.59  E-value=0.12  Score=45.65  Aligned_cols=49  Identities=24%  Similarity=0.358  Sum_probs=34.5

Q ss_pred             cceechhhHHHHHHHhhcCCCCC-CCCC-----EEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLCESSEE-RKGP-----RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~-~~~~-----~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .++|.+..+..|.=.|.++.... .++.     .-|-|+|-.|+|||+||+.+.+
T Consensus       204 ~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~  258 (509)
T smart00350      204 SIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEK  258 (509)
T ss_pred             cccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHH
Confidence            58999888777776666653210 0111     1478999999999999999864

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.59  E-value=0.059  Score=48.45  Aligned_cols=22  Identities=36%  Similarity=0.650  Sum_probs=19.5

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      =.++++||..|.||||+|..+-
T Consensus       494 Ge~vALVGPSGsGKSTiasLL~  515 (716)
T KOG0058|consen  494 GEVVALVGPSGSGKSTIASLLL  515 (716)
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            4699999999999999998763

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ

Probab=93.58  E-value=0.095  Score=44.20  Aligned_cols=21  Identities=38%  Similarity=0.485  Sum_probs=18.4

Q ss_pred             EEEEEecCCCCcHHHHHHHHh
Q 037814          205 RIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      ..|-|+|..|+||||+++.+.
T Consensus       150 GlilI~G~TGSGKTT~l~al~  170 (372)
T TIGR02525       150 GLGLICGETGSGKSTLAASIY  170 (372)
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            467899999999999998874

Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=93.55  E-value=0.062  Score=46.04  Aligned_cols=21  Identities=29%  Similarity=0.638  Sum_probs=19.0

Q ss_pred             CEEEEEecCCCCcHHHHHHHH
Q 037814          204 PRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      =+|++|+|..|+||||-++.+
T Consensus       100 G~V~GilG~NGiGKsTalkIL  120 (591)
T COG1245         100 GKVVGILGPNGIGKSTALKIL  120 (591)
T ss_pred             CcEEEEEcCCCccHHHHHHHH
Confidence            479999999999999999865

>COG1084 Predicted GTPase [General function prediction only]

Probab=93.51  E-value=0.4  Score=39.34  Aligned_cols=24  Identities=21%  Similarity=0.292  Sum_probs=21.7

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      +++..|-|.|++-|||+||++.|=
T Consensus       166 p~~pTivVaG~PNVGKSSlv~~lT  189 (346)
T COG1084         166 PDLPTIVVAGYPNVGKSSLVRKLT  189 (346)
T ss_pred             CCCCeEEEecCCCCcHHHHHHHHh
Confidence            568899999999999999999874

>PRK13764 ATPase; Provisional

Probab=93.49  E-value=0.098  Score=46.80  Aligned_cols=22  Identities=36%  Similarity=0.409  Sum_probs=19.0

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .-|-|.|..|+||||+++.+.+
T Consensus       258 ~~ILIsG~TGSGKTTll~AL~~  279 (602)
T PRK13764        258 EGILIAGAPGAGKSTFAQALAE  279 (602)
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3478999999999999998764

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=93.44  E-value=0.093  Score=46.08  Aligned_cols=49  Identities=33%  Similarity=0.317  Sum_probs=32.5

Q ss_pred             cceechhhHHHHHH---HhhcCCCC----CCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVN---RLLCESSE----ERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~---~L~~~~~~----~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ++.|.+..++.+.+   +++....-    .-...+.+=++|.+|.|||.||+.|.+
T Consensus       243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~  298 (494)
T COG0464         243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL  298 (494)
T ss_pred             hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh
Confidence            45666666655544   33322210    124466889999999999999999987

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=93.43  E-value=0.052  Score=45.99  Aligned_cols=48  Identities=27%  Similarity=0.406  Sum_probs=31.7

Q ss_pred             cceechhhHHHHHHHhhcCCCC-----------CCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          178 EIFGREKEKNELVNRLLCESSE-----------ERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~-----------~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      ++.|..++...|.+-.......           ..+.=.|++|+|..|.|||||.+++-
T Consensus       372 d~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~  430 (593)
T COG2401         372 DIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMIL  430 (593)
T ss_pred             ecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHH
Confidence            4556666666666554322110           12345689999999999999999874

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=93.42  E-value=0.073  Score=46.02  Aligned_cols=23  Identities=22%  Similarity=0.381  Sum_probs=20.1

Q ss_pred             EEEEEecCCCCcHHHHHHHHhcC
Q 037814          205 RIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      --|+|+|.+|+|||||...+.+.
T Consensus       204 ~kVvIvG~~nvGKSSLiN~L~~~  226 (442)
T TIGR00450       204 FKLAIVGSPNVGKSSLLNALLKQ  226 (442)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            35789999999999999998765

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=93.41  E-value=0.1  Score=47.49  Aligned_cols=49  Identities=35%  Similarity=0.413  Sum_probs=32.7

Q ss_pred             cceechhhHHHH---HHHhhcCCC-C--CCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNEL---VNRLLCESS-E--ERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l---~~~L~~~~~-~--~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ++-|.++.+++|   +++|.+.+- .  ..+-.+=+-++|.+|.|||-||+.|--
T Consensus       312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAG  366 (774)
T KOG0731|consen  312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAG  366 (774)
T ss_pred             cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhc
Confidence            577876666655   555544320 0  123356678999999999999999854

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=93.39  E-value=0.14  Score=45.39  Aligned_cols=51  Identities=33%  Similarity=0.376  Sum_probs=37.4

Q ss_pred             CcceechhhHHHHHHHhhcCCCCC------CCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          177 SEIFGREKEKNELVNRLLCESSEE------RKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~------~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .++-|.+....+|.+++..-.-++      -...+=|-++|.+|+|||.||+.|-++
T Consensus       190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAge  246 (802)
T KOG0733|consen  190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGE  246 (802)
T ss_pred             hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhh
Confidence            457789999998888876532111      123455679999999999999998654

>TIGR00368 Mg chelatase-related protein

Probab=93.30  E-value=0.096  Score=45.98  Aligned_cols=43  Identities=30%  Similarity=0.300  Sum_probs=31.0

Q ss_pred             CCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          176 ESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       176 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      -.+++|.+.-++.+.-.+.        +-..+.++|..|+||||||+.+..
T Consensus       191 ~~dv~Gq~~~~~al~~aa~--------~g~~vlliG~pGsGKTtlar~l~~  233 (499)
T TIGR00368       191 LKDIKGQQHAKRALEIAAA--------GGHNLLLFGPPGSGKTMLASRLQG  233 (499)
T ss_pred             HHHhcCcHHHHhhhhhhcc--------CCCEEEEEecCCCCHHHHHHHHhc
Confidence            3567887766555443332        225899999999999999998863

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>TIGR00416 sms DNA repair protein RadA

Probab=93.29  E-value=0.13  Score=44.72  Aligned_cols=24  Identities=33%  Similarity=0.307  Sum_probs=20.8

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      ..-.++-|.|.+|+|||||+.++.
T Consensus        92 ~~GsvilI~G~pGsGKTTL~lq~a  115 (454)
T TIGR00416        92 VPGSLILIGGDPGIGKSTLLLQVA  115 (454)
T ss_pred             cCCeEEEEEcCCCCCHHHHHHHHH
Confidence            445899999999999999998863

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=93.27  E-value=0.072  Score=48.85  Aligned_cols=23  Identities=35%  Similarity=0.567  Sum_probs=20.3

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      =..++|+|..|.|||||++.+..
T Consensus       483 G~~vaivG~sGsGKSTL~~ll~g  505 (694)
T TIGR01846       483 GEFIGIVGPSGSGKSTLTKLLQR  505 (694)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            35899999999999999998754

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=93.26  E-value=0.11  Score=47.44  Aligned_cols=24  Identities=25%  Similarity=0.224  Sum_probs=21.3

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHhc
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ...+|+|.|+.|+||||+++.+.+
T Consensus       441 ~~~~i~i~g~~~~gks~~~~~l~~  464 (661)
T PRK11860        441 RVPVICIDGPTASGKGTVAARVAE  464 (661)
T ss_pred             CcceEEeeCCCCCCHHHHHHHHHH
Confidence            366999999999999999999865

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=93.21  E-value=0.085  Score=42.63  Aligned_cols=24  Identities=29%  Similarity=0.419  Sum_probs=20.6

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhcC
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ...+.|+|++|+|||||...+.+.
T Consensus       118 ~~~~~~vG~~nvGKSslin~l~~~  141 (276)
T TIGR03596       118 PIRAMIVGIPNVGKSTLINRLAGK  141 (276)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCC
Confidence            456999999999999999988654

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=93.19  E-value=0.14  Score=42.40  Aligned_cols=21  Identities=43%  Similarity=0.438  Sum_probs=17.9

Q ss_pred             EEEEecCCCCcHHHHHHHHhc
Q 037814          206 IISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       206 Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      -|-|.|-.|+|||||++.+.+
T Consensus       146 nilI~G~tGSGKTTll~aL~~  166 (323)
T PRK13833        146 NIVISGGTGSGKTTLANAVIA  166 (323)
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            456999999999999988753

>KOG4181 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.17  E-value=0.14  Score=42.20  Aligned_cols=38  Identities=21%  Similarity=0.189  Sum_probs=29.8

Q ss_pred             hhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          183 EKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       183 ~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      -.-.+.+.++|++.     .++.||++.|.-|.||+||...+-
T Consensus       172 g~~~d~a~~ll~~~-----tdf~VIgvlG~QgsGKStllslLa  209 (491)
T KOG4181|consen  172 GIFNDNARKLLHKT-----TDFTVIGVLGGQGSGKSTLLSLLA  209 (491)
T ss_pred             cchhhHHHHHhhcC-----CCeeEEEeecCCCccHHHHHHHHh
Confidence            33455677777654     569999999999999999987753

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=93.14  E-value=0.088  Score=39.23  Aligned_cols=22  Identities=41%  Similarity=0.573  Sum_probs=19.5

Q ss_pred             EEEEecCCCCcHHHHHHHHhcC
Q 037814          206 IISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       206 Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      -+.+.|..|+||+||.+.+|-+
T Consensus        39 CvvL~G~SG~GKStllr~LYaN   60 (235)
T COG4778          39 CVVLHGPSGSGKSTLLRSLYAN   60 (235)
T ss_pred             EEEeeCCCCCcHHHHHHHHHhc
Confidence            4668999999999999999965

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=93.11  E-value=0.075  Score=44.57  Aligned_cols=26  Identities=31%  Similarity=0.335  Sum_probs=22.5

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ...+-|-.||.+|.|||-||+.|+..
T Consensus       243 rPWkgvLm~GPPGTGKTlLAKAvATE  268 (491)
T KOG0738|consen  243 RPWKGVLMVGPPGTGKTLLAKAVATE  268 (491)
T ss_pred             cccceeeeeCCCCCcHHHHHHHHHHh
Confidence            45677889999999999999999853

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=93.11  E-value=0.059  Score=45.49  Aligned_cols=21  Identities=38%  Similarity=0.548  Sum_probs=18.8

Q ss_pred             EEEEEecCCCCcHHHHHHHHh
Q 037814          205 RIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      ..++|||-.|+|||||.+.+.
T Consensus       314 qTlGlVGESGSGKsTlG~all  334 (534)
T COG4172         314 QTLGLVGESGSGKSTLGLALL  334 (534)
T ss_pred             CeEEEEecCCCCcchHHHHHH
Confidence            579999999999999998864

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=93.09  E-value=0.15  Score=43.09  Aligned_cols=24  Identities=33%  Similarity=0.311  Sum_probs=20.6

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      ..-.++-|.|.+|+|||||+.++.
T Consensus        80 ~~GslvLI~G~pG~GKStLllq~a  103 (372)
T cd01121          80 VPGSVILIGGDPGIGKSTLLLQVA  103 (372)
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHH
Confidence            335799999999999999998875

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=93.09  E-value=0.18  Score=41.05  Aligned_cols=24  Identities=21%  Similarity=0.314  Sum_probs=20.7

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhcC
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ...+.|+|++++|||||...+.+.
T Consensus       121 ~~~~~~~G~pnvGKSsliN~l~~~  144 (287)
T PRK09563        121 AIRAMIIGIPNVGKSTLINRLAGK  144 (287)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            457999999999999999988654

>TIGR02533 type_II_gspE general secretory pathway protein E

Probab=93.08  E-value=0.15  Score=44.61  Aligned_cols=41  Identities=32%  Similarity=0.320  Sum_probs=28.1

Q ss_pred             eechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          180 FGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       180 vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .|+..+.-..+..+....      -.+|.|.|..|+||||+...+.+
T Consensus       224 Lg~~~~~~~~l~~~~~~~------~GlilitGptGSGKTTtL~a~L~  264 (486)
T TIGR02533       224 LGMSPELLSRFERLIRRP------HGIILVTGPTGSGKTTTLYAALS  264 (486)
T ss_pred             cCCCHHHHHHHHHHHhcC------CCEEEEEcCCCCCHHHHHHHHHh
Confidence            566554444444444332      36999999999999999986543

This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional

Probab=93.08  E-value=0.14  Score=42.77  Aligned_cols=24  Identities=29%  Similarity=0.170  Sum_probs=20.8

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      +.-+|+=|+|..|+|||+|+.+++
T Consensus       124 ~~G~ItEI~G~~GsGKTql~lqla  147 (344)
T PLN03187        124 ETRCITEAFGEFRSGKTQLAHTLC  147 (344)
T ss_pred             CCCeEEEEecCCCCChhHHHHHHH
Confidence            456899999999999999998764

>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional

Probab=93.01  E-value=0.12  Score=46.82  Aligned_cols=46  Identities=22%  Similarity=0.199  Sum_probs=34.9

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +.++|....+.++++.+..-..   .+.. |-|+|-.|+||+++|+.|++
T Consensus       325 ~~l~g~s~~~~~~~~~~~~~a~---~~~p-vli~Ge~GtGK~~~A~~ih~  370 (638)
T PRK11388        325 DHMPQDSPQMRRLIHFGRQAAK---SSFP-VLLCGEEGVGKALLAQAIHN  370 (638)
T ss_pred             cceEECCHHHHHHHHHHHHHhC---cCCC-EEEECCCCcCHHHHHHHHHH
Confidence            3588988888888777654321   2233 56999999999999999986

>PRK08149 ATP synthase SpaL; Validated

Probab=93.01  E-value=0.099  Score=44.82  Aligned_cols=23  Identities=22%  Similarity=0.430  Sum_probs=20.7

Q ss_pred             EEEEEecCCCCcHHHHHHHHhcC
Q 037814          205 RIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ..++|+|..|+|||||++.+.+.
T Consensus       152 q~i~I~G~sG~GKTTLl~~i~~~  174 (428)
T PRK08149        152 QRMGIFASAGCGKTSLMNMLIEH  174 (428)
T ss_pred             CEEEEECCCCCChhHHHHHHhcC
Confidence            58899999999999999998764

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=93.00  E-value=0.09  Score=47.66  Aligned_cols=25  Identities=28%  Similarity=0.569  Sum_probs=21.9

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ....+|.+.|+.|+||||+|+.+.+
T Consensus       458 ~~~~~i~~~G~~gsGKst~a~~l~~  482 (632)
T PRK05506        458 QKPATVWFTGLSGSGKSTIANLVER  482 (632)
T ss_pred             CCcEEEEecCCCCchHHHHHHHHHH
Confidence            4578999999999999999998754

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=93.00  E-value=0.094  Score=46.02  Aligned_cols=24  Identities=38%  Similarity=0.618  Sum_probs=20.8

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      ++-..++|||..|.|||||++.+-
T Consensus       345 ~~g~~talvG~SGaGKSTLl~lL~  368 (559)
T COG4988         345 KAGQLTALVGASGAGKSTLLNLLL  368 (559)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHh
Confidence            446799999999999999998763

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=92.96  E-value=0.11  Score=43.50  Aligned_cols=25  Identities=28%  Similarity=0.324  Sum_probs=22.0

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      +...|+|+|.+++|||||...+.+.
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~  212 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGA  212 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            5678999999999999999988764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PRK10923 glnG nitrogen regulation protein NR(I); Provisional

Probab=92.95  E-value=0.14  Score=44.51  Aligned_cols=46  Identities=17%  Similarity=0.241  Sum_probs=34.8

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .++|....+..+.+.+..-.    ..-.-|-|.|-.|+|||++|+.+++.
T Consensus       139 ~lig~s~~~~~l~~~~~~~~----~~~~~vli~Ge~GtGK~~lA~~ih~~  184 (469)
T PRK10923        139 DIIGEAPAMQDVFRIIGRLS----RSSISVLINGESGTGKELVAHALHRH  184 (469)
T ss_pred             cceecCHHHHHHHHHHHHHh----ccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence            58898888888777664322    22345779999999999999998764

>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional

Probab=92.95  E-value=0.13  Score=45.57  Aligned_cols=47  Identities=17%  Similarity=0.318  Sum_probs=36.7

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .+++|....++.+.+.+..-.    ..-.-|-|.|-.|+||+++|+.|++.
T Consensus       219 ~~iiG~S~~m~~~~~~i~~~A----~s~~pVLI~GE~GTGKe~~A~~IH~~  265 (538)
T PRK15424        219 GDLLGQSPQMEQVRQTILLYA----RSSAAVLIQGETGTGKELAAQAIHRE  265 (538)
T ss_pred             hheeeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCCCHHHHHHHHHHh
Confidence            359999988888888775322    12346779999999999999999874

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=92.94  E-value=0.1  Score=42.79  Aligned_cols=22  Identities=45%  Similarity=0.673  Sum_probs=18.4

Q ss_pred             CCCEEEEEecCCCCcHHHHHHH
Q 037814          202 KGPRIISLVGMGGIGKTTLAQF  223 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~  223 (229)
                      +++.||-+||..|+||||=.-+
T Consensus       137 ~~p~Vil~vGVNG~GKTTTIaK  158 (340)
T COG0552         137 KKPFVILFVGVNGVGKTTTIAK  158 (340)
T ss_pred             CCcEEEEEEecCCCchHhHHHH
Confidence            5689999999999999985433

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=92.94  E-value=0.11  Score=44.85  Aligned_cols=24  Identities=25%  Similarity=0.369  Sum_probs=20.8

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhcC
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      =..++|+|..|+|||||++.+..-
T Consensus       165 Gqri~I~G~SGsGKTTLL~~Ia~l  188 (450)
T PRK06002        165 GQRIGIFAGSGVGKSTLLAMLARA  188 (450)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            358999999999999999988643

>PRK08972 fliI flagellum-specific ATP synthase; Validated

Probab=92.86  E-value=0.1  Score=44.78  Aligned_cols=23  Identities=22%  Similarity=0.378  Sum_probs=20.6

Q ss_pred             EEEEEecCCCCcHHHHHHHHhcC
Q 037814          205 RIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ..++|+|..|+|||||++.+.+.
T Consensus       163 qrigI~G~sG~GKSTLL~~I~~~  185 (444)
T PRK08972        163 QRMGLFAGSGVGKSVLLGMMTRG  185 (444)
T ss_pred             CEEEEECCCCCChhHHHHHhccC
Confidence            57999999999999999998754

>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR

Probab=92.86  E-value=0.14  Score=45.37  Aligned_cols=47  Identities=15%  Similarity=0.241  Sum_probs=36.5

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .+++|....+..+.+.+..-.    ..-.-|-|.|-.|+||+++|+.|++.
T Consensus       212 ~~iiG~S~~m~~~~~~i~~~A----~~~~pVLI~GE~GTGKe~lA~~IH~~  258 (526)
T TIGR02329       212 DDLLGASAPMEQVRALVRLYA----RSDATVLILGESGTGKELVAQAIHQL  258 (526)
T ss_pred             hheeeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCcCHHHHHHHHHHh
Confidence            358999988888888775322    12246779999999999999999863

At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=92.80  E-value=0.082  Score=48.20  Aligned_cols=23  Identities=39%  Similarity=0.570  Sum_probs=20.4

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHh
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      +..+|.+||++|.||||+|+.+-
T Consensus       214 ~~~~~~~vglp~~GKStia~~L~  236 (664)
T PTZ00322        214 GSLIVIMVGLPGRGKTYVARQIQ  236 (664)
T ss_pred             cceeEEecccCCCChhHHHHHHH
Confidence            45789999999999999999874

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=92.79  E-value=0.091  Score=43.61  Aligned_cols=23  Identities=30%  Similarity=0.355  Sum_probs=20.3

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +.-|+|||.+++|||||...+-+
T Consensus       157 ~adV~lvG~pnaGKSTLl~~lt~  179 (329)
T TIGR02729       157 LADVGLVGLPNAGKSTLISAVSA  179 (329)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhc
Confidence            56789999999999999999864

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>CHL00195 ycf46 Ycf46; Provisional

Probab=92.79  E-value=0.17  Score=44.34  Aligned_cols=49  Identities=33%  Similarity=0.343  Sum_probs=30.7

Q ss_pred             cceechhhHHHHHHHhhc--C--CCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLC--E--SSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~--~--~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ++.|.+.-++.+.+....  .  ..-.-+..+-|-++|..|+|||.||+.+-+
T Consensus       229 dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~  281 (489)
T CHL00195        229 DIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAN  281 (489)
T ss_pred             HhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence            577877666655542211  0  000012345678999999999999998854

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=92.78  E-value=0.096  Score=44.99  Aligned_cols=24  Identities=21%  Similarity=0.343  Sum_probs=21.1

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhcC
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      =..++|+|..|+|||||++.+...
T Consensus       155 GQ~igI~G~sGaGKSTLl~~I~g~  178 (434)
T PRK07196        155 GQRVGLMAGSGVGKSVLLGMITRY  178 (434)
T ss_pred             ceEEEEECCCCCCccHHHHHHhcc
Confidence            368999999999999999988753

>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA

Probab=92.78  E-value=0.15  Score=47.08  Aligned_cols=21  Identities=38%  Similarity=0.536  Sum_probs=19.0

Q ss_pred             EEEEEecCCCCcHHHHHHHHh
Q 037814          205 RIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      +++.|.|.+|+||||+++.+.
T Consensus       369 ~~~il~G~aGTGKTtll~~i~  389 (744)
T TIGR02768       369 DIAVVVGRAGTGKSTMLKAAR  389 (744)
T ss_pred             CEEEEEecCCCCHHHHHHHHH
Confidence            478899999999999999875

This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=92.77  E-value=0.094  Score=44.57  Aligned_cols=23  Identities=22%  Similarity=0.322  Sum_probs=20.1

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +-=|+|||.+++|||||...+-+
T Consensus       159 iadValVG~PNaGKSTLln~Lt~  181 (390)
T PRK12298        159 LADVGLLGLPNAGKSTFIRAVSA  181 (390)
T ss_pred             cccEEEEcCCCCCHHHHHHHHhC
Confidence            44699999999999999999864

>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]

Probab=92.69  E-value=0.16  Score=39.82  Aligned_cols=38  Identities=26%  Similarity=0.358  Sum_probs=26.2

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      .++|.-++   +++.|-...      ..=.-|.|.+|+|||||.+-+
T Consensus       120 ~v~Gt~~~---li~~ly~~g------~lntLiigpP~~GKTTlLRdi  157 (308)
T COG3854         120 QVFGTANP---LIKDLYQNG------WLNTLIIGPPQVGKTTLLRDI  157 (308)
T ss_pred             hhhccchH---HHHHHHhcC------ceeeEEecCCCCChHHHHHHH
Confidence            35565554   555555433      444678999999999998865

>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]

Probab=92.67  E-value=0.19  Score=42.28  Aligned_cols=27  Identities=26%  Similarity=0.351  Sum_probs=23.7

Q ss_pred             CCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          201 RKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       201 ~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .....++.|||+-++|||||+..+-|.
T Consensus        70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~   96 (398)
T COG1341          70 AGKVGVVMVVGPVDSGKSTLTTYLANK   96 (398)
T ss_pred             ccCCcEEEEECCcCcCHHHHHHHHHHH
Confidence            466899999999999999999988663

>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]

Probab=92.67  E-value=0.12  Score=42.07  Aligned_cols=25  Identities=40%  Similarity=0.452  Sum_probs=22.2

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +....+.|||..|.|||-||+.|..
T Consensus       164 k~Pkg~ll~GppGtGKTlla~~Vaa  188 (388)
T KOG0651|consen  164 KPPKGLLLYGPPGTGKTLLARAVAA  188 (388)
T ss_pred             CCCceeEEeCCCCCchhHHHHHHHH
Confidence            4468899999999999999999874

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=92.64  E-value=0.097  Score=43.55  Aligned_cols=23  Identities=30%  Similarity=0.355  Sum_probs=20.2

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +.=|+|||.+++|||||...+-+
T Consensus       158 ~adVglVG~PNaGKSTLln~ls~  180 (335)
T PRK12299        158 LADVGLVGLPNAGKSTLISAVSA  180 (335)
T ss_pred             cCCEEEEcCCCCCHHHHHHHHHc
Confidence            45689999999999999998864

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=92.64  E-value=0.15  Score=45.18  Aligned_cols=46  Identities=20%  Similarity=0.141  Sum_probs=33.9

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ..++|....+.++++.+..-..   .+ .-|-|+|-.|+||++||+.+++
T Consensus       204 ~~~ig~s~~~~~~~~~~~~~A~---~~-~pvlI~GE~GtGK~~lA~aiH~  249 (520)
T PRK10820        204 SQIVAVSPKMRQVVEQARKLAM---LD-APLLITGDTGTGKDLLAYACHL  249 (520)
T ss_pred             cceeECCHHHHHHHHHHHHHhC---CC-CCEEEECCCCccHHHHHHHHHH
Confidence            3589998888888777643221   11 2366999999999999999864

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.63  E-value=0.1  Score=45.60  Aligned_cols=22  Identities=27%  Similarity=0.534  Sum_probs=19.7

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      =.-|+|||-.|+||||+.+.++
T Consensus       378 GekVaIvG~nGsGKSTilr~Ll  399 (591)
T KOG0057|consen  378 GEKVAIVGSNGSGKSTILRLLL  399 (591)
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            3578999999999999999875

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=92.60  E-value=0.22  Score=39.44  Aligned_cols=25  Identities=40%  Similarity=0.534  Sum_probs=21.4

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ....+|-|=|..||||||+|..|-+
T Consensus        87 ~~p~IILIGGasGVGkStIA~ElA~  111 (299)
T COG2074          87 KRPLIILIGGASGVGKSTIAGELAR  111 (299)
T ss_pred             CCCeEEEecCCCCCChhHHHHHHHH
Confidence            4578999999999999999988743

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=92.57  E-value=0.095  Score=51.98  Aligned_cols=22  Identities=27%  Similarity=0.489  Sum_probs=19.9

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      =.+++|||..|+|||||++.+.
T Consensus       411 Ge~vaIvG~SGsGKSTLl~lL~  432 (1466)
T PTZ00265        411 GKTYAFVGESGCGKSTILKLIE  432 (1466)
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            3699999999999999999874

>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]

Probab=92.53  E-value=0.19  Score=40.64  Aligned_cols=24  Identities=38%  Similarity=0.328  Sum_probs=21.6

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      +.-.|+=|+|..|.||||||-+++
T Consensus        58 ~~g~ItEiyG~~gsGKT~lal~~~   81 (279)
T COG0468          58 PRGRITEIYGPESSGKTTLALQLV   81 (279)
T ss_pred             ccceEEEEecCCCcchhhHHHHHH
Confidence            667899999999999999998865

>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]

Probab=92.47  E-value=0.28  Score=38.86  Aligned_cols=50  Identities=24%  Similarity=0.307  Sum_probs=34.9

Q ss_pred             cee-chhhHHHHHHHhhcCCCC-------CCCCCEEEEEecCCCCcHHHHHHHHhcCC
Q 037814          179 IFG-REKEKNELVNRLLCESSE-------ERKGPRIISLVGMGGIGKTTLAQFAYNND  228 (229)
Q Consensus       179 ~vG-~~~~~~~l~~~L~~~~~~-------~~~~~~Vi~IvG~gGvGKTTLa~~vy~d~  228 (229)
                      ++| .+...++|.+.+.-.-.+       .-.+.+=+-++|.+|.|||-||+.|+++.
T Consensus       148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht  205 (404)
T KOG0728|consen  148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT  205 (404)
T ss_pred             HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc
Confidence            454 577777777655322111       12446677899999999999999999875

>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG

Probab=92.46  E-value=0.26  Score=39.64  Aligned_cols=41  Identities=17%  Similarity=0.236  Sum_probs=28.3

Q ss_pred             chhhHHHHHHHhhcCCCCCCCCCEEEEEecC-CCCcHHHHHHHH
Q 037814          182 REKEKNELVNRLLCESSEERKGPRIISLVGM-GGIGKTTLAQFA  224 (229)
Q Consensus       182 ~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~-gGvGKTTLa~~v  224 (229)
                      ..+..+.|..-|.-...  .++.+||+|.+. ||+||||+|-.+
T Consensus        83 ~~e~~~~l~~~l~~~~~--~~~~~vi~vts~~~g~Gktt~a~nL  124 (274)
T TIGR03029        83 QVEALRALRSQLMLRWF--SEGRKALAVVSAKSGEGCSYIAANL  124 (274)
T ss_pred             HHHHHHHHHHHhhhhcc--CCCCeEEEEECCCCCCCHHHHHHHH
Confidence            45667777666643221  155799999986 899999988653

The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=92.45  E-value=0.19  Score=44.02  Aligned_cols=50  Identities=32%  Similarity=0.346  Sum_probs=33.7

Q ss_pred             Ccceechh---hHHHHHHHhhcCCCC---CCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREK---EKNELVNRLLCESSE---ERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~---~~~~l~~~L~~~~~~---~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .++-|.|+   |+++|+++|.+..-=   ..+=.+=|-+||.+|.|||-||+.|--
T Consensus       304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAG  359 (752)
T KOG0734|consen  304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAG  359 (752)
T ss_pred             ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhc
Confidence            35678755   556677777653200   012256677999999999999999853

>PRK08927 fliI flagellum-specific ATP synthase; Validated

Probab=92.42  E-value=0.13  Score=44.24  Aligned_cols=24  Identities=21%  Similarity=0.376  Sum_probs=21.2

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhcC
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      =..++|+|-.|+|||||++.+.+.
T Consensus       158 Gqri~I~G~sG~GKTtLL~~I~~~  181 (442)
T PRK08927        158 GQRMGIFAGSGVGKSVLLSMLARN  181 (442)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhc
Confidence            468899999999999999998864

>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]

Probab=92.33  E-value=0.36  Score=39.19  Aligned_cols=51  Identities=29%  Similarity=0.326  Sum_probs=36.9

Q ss_pred             CcceechhhHHHHHHHhhcCCCC-------CCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          177 SEIFGREKEKNELVNRLLCESSE-------ERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .++-|.+...++|.+-..-.-.+       .-+..+=|-.+|.+|.|||-||+.|-|.
T Consensus       185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANq  242 (440)
T KOG0726|consen  185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQ  242 (440)
T ss_pred             cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcc
Confidence            46788999999998764221100       1234566679999999999999999875

>PRK11058 GTPase HflX; Provisional

Probab=92.27  E-value=0.14  Score=44.05  Aligned_cols=25  Identities=32%  Similarity=0.339  Sum_probs=21.5

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ++..|+|+|..++|||||...+.+.
T Consensus       196 ~~p~ValVG~~NaGKSSLlN~Lt~~  220 (426)
T PRK11058        196 DVPTVSLVGYTNAGKSTLFNRITEA  220 (426)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4567999999999999999987753

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=92.25  E-value=0.13  Score=46.61  Aligned_cols=23  Identities=30%  Similarity=0.440  Sum_probs=20.6

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      =.+++|+|..|.|||||.+.+..
T Consensus        51 Ge~~aI~G~sGsGKSTLL~~L~g   73 (617)
T TIGR00955        51 GELLAVMGSSGAGKTTLMNALAF   73 (617)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhC
Confidence            46999999999999999998864

>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=92.23  E-value=0.24  Score=42.52  Aligned_cols=52  Identities=19%  Similarity=0.190  Sum_probs=42.3

Q ss_pred             CCCCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          174 IDESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       174 ~~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ..+..++||+.++..+.+|+...-+  .+.-.-+=|.|.+|.|||.+...||.+
T Consensus       147 ~~p~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~  198 (529)
T KOG2227|consen  147 APPGTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDS  198 (529)
T ss_pred             CCCCCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHh
Confidence            3445799999999999999976542  255667788999999999999999876

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=92.23  E-value=0.16  Score=42.08  Aligned_cols=23  Identities=22%  Similarity=0.395  Sum_probs=20.4

Q ss_pred             EEEEEecCCCCcHHHHHHHHhcC
Q 037814          205 RIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ..++|+|..|+|||||.+.+.+.
T Consensus        70 qri~I~G~sG~GKTtLl~~Ia~~   92 (326)
T cd01136          70 QRLGIFAGSGVGKSTLLGMIARG   92 (326)
T ss_pred             cEEEEECCCCCChHHHHHHHhCC
Confidence            57899999999999999988753

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>PRK11823 DNA repair protein RadA; Provisional

Probab=92.22  E-value=0.23  Score=43.06  Aligned_cols=25  Identities=28%  Similarity=0.283  Sum_probs=21.0

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ..-.++-|.|.+|+|||||+.++..
T Consensus        78 ~~Gs~~lI~G~pG~GKTtL~lq~a~  102 (446)
T PRK11823         78 VPGSVVLIGGDPGIGKSTLLLQVAA  102 (446)
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3457999999999999999988753

>PLN03186 DNA repair protein RAD51 homolog; Provisional

Probab=92.10  E-value=0.22  Score=41.61  Aligned_cols=24  Identities=25%  Similarity=0.217  Sum_probs=20.9

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      +.-.++-|+|.+|+|||+|+..++
T Consensus       121 ~~g~i~~i~G~~g~GKT~l~~~l~  144 (342)
T PLN03186        121 ETGSITEIYGEFRTGKTQLCHTLC  144 (342)
T ss_pred             cCceEEEEECCCCCCccHHHHHHH
Confidence            456899999999999999998765

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=92.09  E-value=0.25  Score=41.09  Aligned_cols=45  Identities=29%  Similarity=0.332  Sum_probs=32.6

Q ss_pred             CcceechhhHH---HHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          177 SEIFGREKEKN---ELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       177 ~~~vG~~~~~~---~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .-+||..+.++   -|+++...+.    -.=+.|-|+|.+|.|||.||--|-
T Consensus        39 dG~VGQ~~AReAaGvIv~mik~gk----~aGrgiLi~GppgTGKTAlA~gIa   86 (450)
T COG1224          39 DGLVGQEEAREAAGVIVKMIKQGK----MAGRGILIVGPPGTGKTALAMGIA   86 (450)
T ss_pred             CcccchHHHHHhhhHHHHHHHhCc----ccccEEEEECCCCCcHHHHHHHHH
Confidence            34888777666   3566665543    334788899999999999996653

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=92.07  E-value=0.24  Score=43.38  Aligned_cols=43  Identities=28%  Similarity=0.338  Sum_probs=29.6

Q ss_pred             hhHHHHHHHhhcC-CCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          184 KEKNELVNRLLCE-SSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       184 ~~~~~l~~~L~~~-~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .-+.++.+||..- .....-+-+|+-|.|..|+||||-++.+..
T Consensus        89 kKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLsk  132 (634)
T KOG1970|consen   89 KKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSK  132 (634)
T ss_pred             HhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHH
Confidence            3356788888710 000013456999999999999999998764

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=92.03  E-value=0.31  Score=40.83  Aligned_cols=45  Identities=29%  Similarity=0.388  Sum_probs=29.6

Q ss_pred             CcceechhhHHH---HHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          177 SEIFGREKEKNE---LVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       177 ~~~vG~~~~~~~---l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .-+||..+.++.   +++++....-    .=+.|-+.|.+|.|||+||-.+-
T Consensus        24 ~GlVGQ~~AReAagiiv~mIk~~K~----aGr~iLiaGppGtGKTAlA~~ia   71 (398)
T PF06068_consen   24 DGLVGQEKAREAAGIIVDMIKEGKI----AGRAILIAGPPGTGKTALAMAIA   71 (398)
T ss_dssp             TTEES-HHHHHHHHHHHHHHHTT------TT-EEEEEE-TTSSHHHHHHHHH
T ss_pred             ccccChHHHHHHHHHHHHHHhcccc----cCcEEEEeCCCCCCchHHHHHHH
Confidence            358998877764   4666655431    23677799999999999997764

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=91.98  E-value=0.26  Score=40.07  Aligned_cols=47  Identities=17%  Similarity=0.125  Sum_probs=31.1

Q ss_pred             Ccceech---hhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGRE---KEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~---~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +..+|..   +-.++|.++|.....   ....=+-|||-.|.|||++++..+.
T Consensus        34 ~rWIgY~~A~~~L~~L~~Ll~~P~~---~Rmp~lLivG~snnGKT~Ii~rF~~   83 (302)
T PF05621_consen   34 DRWIGYPRAKEALDRLEELLEYPKR---HRMPNLLIVGDSNNGKTMIIERFRR   83 (302)
T ss_pred             CCeecCHHHHHHHHHHHHHHhCCcc---cCCCceEEecCCCCcHHHHHHHHHH
Confidence            3455543   334455555544332   3445588999999999999998774

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=91.98  E-value=0.21  Score=42.06  Aligned_cols=23  Identities=22%  Similarity=0.430  Sum_probs=20.4

Q ss_pred             EEEEEecCCCCcHHHHHHHHhcC
Q 037814          205 RIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .-+.+||+.|+|||||...+.+.
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~  177 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQ  177 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhh
Confidence            57899999999999999998763

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK05922 type III secretion system ATPase; Validated

Probab=91.97  E-value=0.15  Score=43.77  Aligned_cols=23  Identities=22%  Similarity=0.274  Sum_probs=20.3

Q ss_pred             EEEEEecCCCCcHHHHHHHHhcC
Q 037814          205 RIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ..++|+|..|+|||||.+.+.+.
T Consensus       158 qrigI~G~nG~GKSTLL~~Ia~~  180 (434)
T PRK05922        158 QRIGVFSEPGSGKSSLLSTIAKG  180 (434)
T ss_pred             cEEEEECCCCCChHHHHHHHhcc
Confidence            46899999999999999998654

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=91.94  E-value=0.18  Score=43.21  Aligned_cols=31  Identities=35%  Similarity=0.423  Sum_probs=24.8

Q ss_pred             HHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814          187 NELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       187 ~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      ++|++.|.+..       .=|-|-|.+|.||||.||.+
T Consensus       253 dkl~eRL~era-------eGILIAG~PGaGKsTFaqAl  283 (604)
T COG1855         253 DKLKERLEERA-------EGILIAGAPGAGKSTFAQAL  283 (604)
T ss_pred             HHHHHHHHhhh-------cceEEecCCCCChhHHHHHH
Confidence            47777777654       35678999999999999986

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=91.88  E-value=0.12  Score=51.17  Aligned_cols=22  Identities=27%  Similarity=0.489  Sum_probs=19.9

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      =..++|||..|+|||||++.+.
T Consensus      1194 G~~vAIVG~SGsGKSTl~~LL~ 1215 (1466)
T PTZ00265       1194 KKTTAIVGETGSGKSTVMSLLM 1215 (1466)
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999999874

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=91.83  E-value=0.34  Score=44.55  Aligned_cols=47  Identities=17%  Similarity=0.335  Sum_probs=35.0

Q ss_pred             cceechhhHHHHHHHhhcCC---CCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814          178 EIFGREKEKNELVNRLLCES---SEERKGPRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~---~~~~~~~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      .++|-+..+..|.+-+.-..   .+.+..+.+.-.+|..|||||-||+.+
T Consensus       492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaL  541 (786)
T COG0542         492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKAL  541 (786)
T ss_pred             ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHH
Confidence            58999988888877663211   112367889999999999999887763

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=91.79  E-value=0.26  Score=43.19  Aligned_cols=24  Identities=33%  Similarity=0.278  Sum_probs=20.9

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      +.=+++-|.|.+|+|||||+.++.
T Consensus       261 ~~gs~~li~G~~G~GKt~l~~~f~  284 (484)
T TIGR02655       261 FKDSIILATGATGTGKTLLVSKFL  284 (484)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHH
Confidence            556899999999999999998754

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=91.78  E-value=0.11  Score=39.94  Aligned_cols=19  Identities=47%  Similarity=0.576  Sum_probs=16.2

Q ss_pred             EEEEecCCCCcHHHHHHHH
Q 037814          206 IISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       206 Vi~IvG~gGvGKTTLa~~v  224 (229)
                      ---+||..|.|||||.+.+
T Consensus        42 RcLlVGaNGaGKtTlLKiL   60 (291)
T KOG2355|consen   42 RCLLVGANGAGKTTLLKIL   60 (291)
T ss_pred             eEEEEecCCCchhhhHHHh
Confidence            4457999999999999875

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=91.77  E-value=0.19  Score=44.73  Aligned_cols=54  Identities=28%  Similarity=0.337  Sum_probs=36.0

Q ss_pred             CCCCcceechhhHHHHHHHhhcCCCCC------CCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          174 IDESEIFGREKEKNELVNRLLCESSEE------RKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       174 ~~~~~~vG~~~~~~~l~~~L~~~~~~~------~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ..-.++-|.++.++++.+.+..-.+++      ..=.+=+..+|.+|.|||.||+.+-..
T Consensus       147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgE  206 (596)
T COG0465         147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGE  206 (596)
T ss_pred             cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcc
Confidence            334568898877776655543322110      123567889999999999999998544

>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator

Probab=91.73  E-value=0.27  Score=42.50  Aligned_cols=45  Identities=16%  Similarity=0.243  Sum_probs=33.6

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .++|....+.++.+.+..-..   .+..|+ |.|-.|+|||+||+.++.
T Consensus       140 ~lig~s~~~~~l~~~i~~~a~---~~~~vl-i~Ge~GtGK~~lA~~ih~  184 (445)
T TIGR02915       140 GLITSSPGMQKICRTIEKIAP---SDITVL-LLGESGTGKEVLARALHQ  184 (445)
T ss_pred             ceeecCHHHHHHHHHHHHHhC---CCCCEE-EECCCCcCHHHHHHHHHH
Confidence            478888888887776653221   334555 999999999999999875

Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).

>PRK08472 fliI flagellum-specific ATP synthase; Validated

Probab=91.71  E-value=0.17  Score=43.51  Aligned_cols=23  Identities=22%  Similarity=0.430  Sum_probs=20.8

Q ss_pred             EEEEEecCCCCcHHHHHHHHhcC
Q 037814          205 RIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ..++|+|..|+|||||++.+...
T Consensus       158 q~~~i~G~sG~GKStLl~~i~~~  180 (434)
T PRK08472        158 QKLGIFAGSGVGKSTLMGMIVKG  180 (434)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhc
Confidence            58999999999999999998754

>PLN03232 ABC transporter C family member; Provisional

Probab=91.59  E-value=0.15  Score=50.77  Aligned_cols=23  Identities=22%  Similarity=0.494  Sum_probs=20.6

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      =..|+|||..|.|||||++.++.
T Consensus      1262 GekvaIVG~SGSGKSTL~~lL~r 1284 (1495)
T PLN03232       1262 SEKVGVVGRTGAGKSSMLNALFR 1284 (1495)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999999998764

>PRK14712 conjugal transfer nickase/helicase TraI; Provisional

Probab=91.59  E-value=0.26  Score=48.90  Aligned_cols=36  Identities=22%  Similarity=0.258  Sum_probs=27.4

Q ss_pred             hhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          183 EKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       183 ~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      +..++.+..+|....       +++.|.|.+|+||||+.+.|.
T Consensus       838 ~~Qr~Av~~iLts~d-------r~~~IqG~AGTGKTT~l~~i~  873 (1623)
T PRK14712        838 SGQRAATRMILETSD-------RFTVVQGYAGVGKTTQFRAVM  873 (1623)
T ss_pred             HHHHHHHHHHHhCCC-------ceEEEEeCCCCCHHHHHHHHH
Confidence            455666666665443       699999999999999977663

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=91.58  E-value=0.15  Score=45.26  Aligned_cols=25  Identities=40%  Similarity=0.466  Sum_probs=21.5

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhcCC
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYNND  228 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~d~  228 (229)
                      ..=|-+||.+|+|||-||+.|-|..
T Consensus       545 PsGvLL~GPPGCGKTLlAKAVANEa  569 (802)
T KOG0733|consen  545 PSGVLLCGPPGCGKTLLAKAVANEA  569 (802)
T ss_pred             CCceEEeCCCCccHHHHHHHHhhhc
Confidence            4557799999999999999998864

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=91.56  E-value=0.18  Score=40.42  Aligned_cols=23  Identities=26%  Similarity=0.489  Sum_probs=20.2

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHH
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      ++=.+++.+|..|.||||+.+.+
T Consensus        48 P~G~ivgflGaNGAGKSTtLKmL   70 (325)
T COG4586          48 PKGEIVGFLGANGAGKSTTLKML   70 (325)
T ss_pred             CCCcEEEEEcCCCCcchhhHHHH
Confidence            44579999999999999999875

>PRK06936 type III secretion system ATPase; Provisional

Probab=91.56  E-value=0.2  Score=43.10  Aligned_cols=25  Identities=20%  Similarity=0.246  Sum_probs=21.9

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhcCC
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYNND  228 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~d~  228 (229)
                      =..++|+|-.|+|||||.+.+++..
T Consensus       162 Gq~~~I~G~sG~GKStLl~~Ia~~~  186 (439)
T PRK06936        162 GQRMGIFAAAGGGKSTLLASLIRSA  186 (439)
T ss_pred             CCEEEEECCCCCChHHHHHHHhcCC
Confidence            3689999999999999999998653

>PRK09862 putative ATP-dependent protease; Provisional

Probab=91.47  E-value=0.21  Score=43.83  Aligned_cols=42  Identities=33%  Similarity=0.425  Sum_probs=28.9

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|....++.+. +-.       .+-..+.|+|..|.|||||++.+..
T Consensus       191 ~~v~Gq~~~~~al~-laa-------~~G~~llliG~~GsGKTtLak~L~g  232 (506)
T PRK09862        191 SDVIGQEQGKRGLE-ITA-------AGGHNLLLIGPPGTGKTMLASRING  232 (506)
T ss_pred             EEEECcHHHHhhhh-eec-------cCCcEEEEECCCCCcHHHHHHHHhc
Confidence            35667655444432 211       2347999999999999999998864

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=91.40  E-value=0.19  Score=41.23  Aligned_cols=24  Identities=29%  Similarity=0.452  Sum_probs=21.0

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      ....||++||..-.|||||.+.+-
T Consensus       176 ~s~pviavVGYTNaGKsTLikaLT  199 (410)
T KOG0410|consen  176 ESSPVIAVVGYTNAGKSTLIKALT  199 (410)
T ss_pred             CCCceEEEEeecCccHHHHHHHHH
Confidence            447899999999999999998863

>PRK05688 fliI flagellum-specific ATP synthase; Validated

Probab=91.40  E-value=0.21  Score=43.12  Aligned_cols=22  Identities=23%  Similarity=0.371  Sum_probs=20.1

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ..++|+|-.|+|||||++.+.+
T Consensus       169 qrigI~G~sG~GKSTLl~~I~g  190 (451)
T PRK05688        169 QRLGLFAGTGVGKSVLLGMMTR  190 (451)
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            5799999999999999999865

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=91.39  E-value=0.17  Score=50.08  Aligned_cols=24  Identities=25%  Similarity=0.325  Sum_probs=21.3

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhcC
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      =.+++|+|..|.|||||.+.+...
T Consensus        87 Ge~~aIlG~nGsGKSTLLk~LaG~  110 (1394)
T TIGR00956        87 GELTVVLGRPGSGCSTLLKTIASN  110 (1394)
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCC
Confidence            369999999999999999998753

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=91.39  E-value=0.11  Score=44.40  Aligned_cols=21  Identities=43%  Similarity=0.585  Sum_probs=18.1

Q ss_pred             EEEecCCCCcHHHHHHHHhcC
Q 037814          207 ISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       207 i~IvG~gGvGKTTLa~~vy~d  227 (229)
                      -++||..|.|||||.++|-+.
T Consensus       293 YGLVGPNG~GKTTLLkHIa~R  313 (807)
T KOG0066|consen  293 YGLVGPNGMGKTTLLKHIAAR  313 (807)
T ss_pred             ecccCCCCCchHHHHHHHHhh
Confidence            378999999999999998653

>CHL00189 infB translation initiation factor 2; Provisional

Probab=91.34  E-value=0.2  Score=45.97  Aligned_cols=25  Identities=32%  Similarity=0.441  Sum_probs=22.0

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ....+|+|+|..|+|||||+..+.+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~  266 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRK  266 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHh
Confidence            4568999999999999999988764

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=91.29  E-value=0.16  Score=46.20  Aligned_cols=50  Identities=26%  Similarity=0.326  Sum_probs=31.2

Q ss_pred             cceechhhHHHHHHHhhcCCCC------CCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          178 EIFGREKEKNELVNRLLCESSE------ERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~------~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ++.|.+..++.|.+++.....+      ...-.+-|.++|..|+||||||+.+.+.
T Consensus       153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~  208 (644)
T PRK10733        153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE  208 (644)
T ss_pred             HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence            5677776666665544221100      0011223889999999999999988653

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=91.28  E-value=0.17  Score=43.86  Aligned_cols=24  Identities=29%  Similarity=0.618  Sum_probs=21.1

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHhc
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .=++|++||..|.||+|+.+.+|.
T Consensus       563 pGktvAlVG~SGaGKSTimRlLfR  586 (790)
T KOG0056|consen  563 PGKTVALVGPSGAGKSTIMRLLFR  586 (790)
T ss_pred             CCcEEEEECCCCCchhHHHHHHHH
Confidence            347999999999999999998763

>PLN03140 ABC transporter G family member; Provisional

Probab=91.26  E-value=0.18  Score=50.02  Aligned_cols=24  Identities=33%  Similarity=0.293  Sum_probs=21.2

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHhc
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .=.+++|+|..|.|||||.+.+..
T Consensus       190 ~Ge~~~llGpnGSGKSTLLk~LaG  213 (1470)
T PLN03140        190 PSRMTLLLGPPSSGKTTLLLALAG  213 (1470)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHhC
Confidence            346999999999999999998865

>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI

Probab=91.25  E-value=0.22  Score=42.65  Aligned_cols=23  Identities=26%  Similarity=0.456  Sum_probs=20.7

Q ss_pred             EEEEEecCCCCcHHHHHHHHhcC
Q 037814          205 RIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ..++|+|-.|+|||||++.+...
T Consensus       141 q~i~I~G~sG~GKTtLl~~I~~~  163 (418)
T TIGR03498       141 QRLGIFAGSGVGKSTLLSMLARN  163 (418)
T ss_pred             cEEEEECCCCCChHHHHHHHhCC
Confidence            58999999999999999988764

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]

Probab=91.21  E-value=0.48  Score=38.51  Aligned_cols=27  Identities=26%  Similarity=0.358  Sum_probs=23.8

Q ss_pred             CCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          201 RKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       201 ~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ...+.|--|-|.=|.|||||..+|...
T Consensus        54 ~~rIPvtIITGyLGaGKtTLLn~Il~~   80 (391)
T KOG2743|consen   54 GARIPVTIITGYLGAGKTTLLNYILTG   80 (391)
T ss_pred             CCccceEEEEecccCChHHHHHHHHcc
Confidence            467899999999999999999998754

>PRK13826 Dtr system oriT relaxase; Provisional

Probab=91.20  E-value=0.29  Score=46.82  Aligned_cols=22  Identities=45%  Similarity=0.652  Sum_probs=19.7

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ++..|.|.+|.||||+.+.+..
T Consensus       398 r~~~v~G~AGTGKTt~l~~~~~  419 (1102)
T PRK13826        398 RIAAVVGRAGAGKTTMMKAARE  419 (1102)
T ss_pred             CeEEEEeCCCCCHHHHHHHHHH
Confidence            6889999999999999998753

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=91.20  E-value=0.23  Score=44.61  Aligned_cols=25  Identities=24%  Similarity=0.425  Sum_probs=21.7

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ....+|+|+|..++|||||...+.+
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~  109 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRK  109 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHh
Confidence            3457999999999999999998765

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=91.19  E-value=0.18  Score=43.37  Aligned_cols=24  Identities=25%  Similarity=0.439  Sum_probs=21.1

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhcC
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      =..++|+|-.|+|||||++.+.+.
T Consensus       155 GqrigI~G~sG~GKSTLL~~I~~~  178 (433)
T PRK07594        155 GQRVGIFSAPGVGKSTLLAMLCNA  178 (433)
T ss_pred             CCEEEEECCCCCCccHHHHHhcCC
Confidence            368999999999999999998754

>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]

Probab=91.18  E-value=0.19  Score=46.67  Aligned_cols=33  Identities=30%  Similarity=0.517  Sum_probs=23.8

Q ss_pred             hhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHH
Q 037814          183 EKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQF  223 (229)
Q Consensus       183 ~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~  223 (229)
                      +..++.+.+.|...+        -.-|.||+|.||||+.-.
T Consensus       672 ~dQr~A~~k~L~aed--------y~LI~GMPGTGKTTtI~~  704 (1100)
T KOG1805|consen  672 NDQRQALLKALAAED--------YALILGMPGTGKTTTISL  704 (1100)
T ss_pred             HHHHHHHHHHHhccc--------hheeecCCCCCchhhHHH
Confidence            456667777776544        345899999999997654

>PRK07960 fliI flagellum-specific ATP synthase; Validated

Probab=91.17  E-value=0.17  Score=43.61  Aligned_cols=24  Identities=21%  Similarity=0.311  Sum_probs=20.9

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhcC
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      =..++|+|-.|+|||||++.+.+.
T Consensus       175 Gqri~I~G~sG~GKTTLL~~Ia~~  198 (455)
T PRK07960        175 GQRMGLFAGSGVGKSVLLGMMARY  198 (455)
T ss_pred             CcEEEEECCCCCCccHHHHHHhCC
Confidence            367999999999999999988653

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=91.15  E-value=0.21  Score=42.96  Aligned_cols=23  Identities=35%  Similarity=0.482  Sum_probs=20.5

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +--|+|||.+.+|||||...+.+
T Consensus       158 ~adVglVG~pNaGKSTLLn~Lt~  180 (424)
T PRK12297        158 LADVGLVGFPNVGKSTLLSVVSN  180 (424)
T ss_pred             cCcEEEEcCCCCCHHHHHHHHHc
Confidence            45799999999999999999875

>PLN03140 ABC transporter G family member; Provisional

Probab=91.15  E-value=0.18  Score=49.96  Aligned_cols=23  Identities=35%  Similarity=0.520  Sum_probs=20.6

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      =.+++|+|..|.|||||.+.+..
T Consensus       906 Gel~aL~G~sGaGKTTLL~~LaG  928 (1470)
T PLN03140        906 GVLTALMGVSGAGKTTLMDVLAG  928 (1470)
T ss_pred             CeEEEEECCCCCCHHHHHHHHcC
Confidence            36999999999999999998764

>PRK06820 type III secretion system ATPase; Validated

Probab=91.14  E-value=0.23  Score=42.83  Aligned_cols=23  Identities=26%  Similarity=0.491  Sum_probs=20.5

Q ss_pred             EEEEEecCCCCcHHHHHHHHhcC
Q 037814          205 RIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ..++|+|-.|+|||||++.+...
T Consensus       164 qri~I~G~sG~GKStLl~~I~~~  186 (440)
T PRK06820        164 QRIGIFAAAGVGKSTLLGMLCAD  186 (440)
T ss_pred             CEEEEECCCCCChHHHHHHHhcc
Confidence            47899999999999999998754

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=91.05  E-value=0.21  Score=43.14  Aligned_cols=23  Identities=22%  Similarity=0.378  Sum_probs=20.6

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      -.+++|+|..|+|||||++.+.+
T Consensus       158 Gq~i~I~G~sG~GKStLl~~I~~  180 (438)
T PRK07721        158 GQRVGIFAGSGVGKSTLMGMIAR  180 (438)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhc
Confidence            47999999999999999998765

>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies

Probab=91.03  E-value=0.2  Score=38.43  Aligned_cols=19  Identities=32%  Similarity=0.452  Sum_probs=15.2

Q ss_pred             EEEEecCCCCcHHHHHHHH
Q 037814          206 IISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       206 Vi~IvG~gGvGKTTLa~~v  224 (229)
                      -+.|+|..|.|||++++.+
T Consensus        40 h~li~G~tgsGKS~~l~~l   58 (205)
T PF01580_consen   40 HLLIAGATGSGKSTLLRTL   58 (205)
T ss_dssp             SEEEE--TTSSHHHHHHHH
T ss_pred             eEEEEcCCCCCccHHHHHH
Confidence            6889999999999999865

The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=90.96  E-value=0.19  Score=50.18  Aligned_cols=23  Identities=26%  Similarity=0.447  Sum_probs=20.5

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      =..|+|||..|.|||||++.++.
T Consensus      1312 GekiaIVGrTGsGKSTL~~lL~r 1334 (1522)
T TIGR00957      1312 GEKVGIVGRTGAGKSSLTLGLFR 1334 (1522)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            36899999999999999998864

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PLN03130 ABC transporter C family member; Provisional

Probab=90.95  E-value=0.19  Score=50.40  Aligned_cols=23  Identities=22%  Similarity=0.508  Sum_probs=20.5

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      =..|+|||..|.|||||++.++.
T Consensus      1265 GekVaIVGrSGSGKSTLl~lL~r 1287 (1622)
T PLN03130       1265 SEKVGIVGRTGAGKSSMLNALFR 1287 (1622)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999999999864

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=90.90  E-value=0.25  Score=42.50  Aligned_cols=24  Identities=25%  Similarity=0.375  Sum_probs=20.9

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhcC
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      -..++|+|..|+|||||.+.+.+.
T Consensus       145 Gq~~~I~G~sG~GKStLl~~I~~~  168 (422)
T TIGR02546       145 GQRIGIFAGAGVGKSTLLGMIARG  168 (422)
T ss_pred             CCEEEEECCCCCChHHHHHHHhCC
Confidence            357899999999999999988754

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=90.84  E-value=0.21  Score=49.51  Aligned_cols=23  Identities=35%  Similarity=0.510  Sum_probs=20.4

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      =.+++|+|..|.|||||.+.+..
T Consensus       789 Ge~~aI~G~sGaGKSTLL~~Lag  811 (1394)
T TIGR00956       789 GTLTALMGASGAGKTTLLNVLAE  811 (1394)
T ss_pred             CEEEEEECCCCCCHHHHHHHHhC
Confidence            35899999999999999998764

>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI

Probab=90.83  E-value=0.26  Score=42.17  Aligned_cols=23  Identities=22%  Similarity=0.367  Sum_probs=20.4

Q ss_pred             EEEEEecCCCCcHHHHHHHHhcC
Q 037814          205 RIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ..++|+|-.|+|||||++.+.+.
T Consensus       138 q~~~I~G~sG~GKTtLl~~I~~~  160 (411)
T TIGR03496       138 QRMGIFAGSGVGKSTLLGMMARY  160 (411)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            57999999999999999988753

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK13709 conjugal transfer nickase/helicase TraI; Provisional

Probab=90.61  E-value=0.36  Score=48.42  Aligned_cols=36  Identities=22%  Similarity=0.261  Sum_probs=26.6

Q ss_pred             hhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          183 EKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       183 ~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      +..++.+..+|...+       +++.|.|.+|+||||+.+.|.
T Consensus       970 ~~Q~~Av~~il~s~d-------r~~~I~G~AGTGKTT~l~~v~ 1005 (1747)
T PRK13709        970 SGQRAATRMILESTD-------RFTVVQGYAGVGKTTQFRAVM 1005 (1747)
T ss_pred             HHHHHHHHHHHhCCC-------cEEEEEeCCCCCHHHHHHHHH
Confidence            345555555554332       699999999999999998764

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=90.54  E-value=0.28  Score=42.35  Aligned_cols=23  Identities=30%  Similarity=0.462  Sum_probs=20.3

Q ss_pred             EEEEEecCCCCcHHHHHHHHhcC
Q 037814          205 RIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ..++|+|-.|+|||||++.+.+.
T Consensus       164 q~~~I~G~sG~GKStLl~~I~~~  186 (440)
T TIGR01026       164 QRIGIFAGSGVGKSTLLGMIARN  186 (440)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            57899999999999999988753

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=90.50  E-value=0.28  Score=45.15  Aligned_cols=26  Identities=27%  Similarity=0.469  Sum_probs=22.1

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ..+..|+|+|.+++|||||...+.+.
T Consensus       273 ~~~~~V~IvG~~nvGKSSL~n~l~~~  298 (712)
T PRK09518        273 KAVGVVAIVGRPNVGKSTLVNRILGR  298 (712)
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHhCC
Confidence            34678999999999999999988653

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=90.50  E-value=0.2  Score=49.87  Aligned_cols=23  Identities=30%  Similarity=0.421  Sum_probs=20.3

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      =..|+|||..|.|||||++.++.
T Consensus      1245 GekvaIvGrSGsGKSTLl~lL~r 1267 (1490)
T TIGR01271      1245 GQRVGLLGRTGSGKSTLLSALLR 1267 (1490)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhh
Confidence            46799999999999999998763

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PTZ00111 DNA replication licensing factor MCM4; Provisional

Probab=90.49  E-value=0.56  Score=43.90  Aligned_cols=49  Identities=22%  Similarity=0.270  Sum_probs=32.7

Q ss_pred             cceechhhHHHHHHHhhcCCCCC---------------CCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLCESSEE---------------RKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~---------------~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .++|.+..+..|+=.|..+....               -.+-.-|-|+|-+|+|||+||+.|.+
T Consensus       451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~  514 (915)
T PTZ00111        451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHL  514 (915)
T ss_pred             eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHH
Confidence            46777777776665555543100               01112577999999999999999875

>COG3910 Predicted ATPase [General function prediction only]

Probab=90.48  E-value=0.29  Score=37.13  Aligned_cols=21  Identities=33%  Similarity=0.442  Sum_probs=18.4

Q ss_pred             CEEEEEecCCCCcHHHHHHHH
Q 037814          204 PRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      ..|--|+|-.|+||+||...|
T Consensus        37 apIT~i~GENGsGKSTLLEai   57 (233)
T COG3910          37 APITFITGENGSGKSTLLEAI   57 (233)
T ss_pred             CceEEEEcCCCccHHHHHHHH
Confidence            468889999999999998775

>PTZ00243 ABC transporter; Provisional

Probab=90.46  E-value=0.23  Score=49.75  Aligned_cols=23  Identities=30%  Similarity=0.382  Sum_probs=20.3

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      =..|+|||-.|.|||||++.+..
T Consensus      1336 GekVaIVGrTGSGKSTLl~lLlr 1358 (1560)
T PTZ00243       1336 REKVGIVGRTGSGKSTLLLTFMR 1358 (1560)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            36899999999999999998753

>PRK09099 type III secretion system ATPase; Provisional

Probab=90.37  E-value=0.31  Score=42.07  Aligned_cols=24  Identities=21%  Similarity=0.355  Sum_probs=21.1

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhcC
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      =..++|+|..|+|||||++.+...
T Consensus       163 Gq~~~I~G~sG~GKTtLl~~ia~~  186 (441)
T PRK09099        163 GQRMGIFAPAGVGKSTLMGMFARG  186 (441)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            368999999999999999998753

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=90.33  E-value=0.2  Score=42.70  Aligned_cols=21  Identities=19%  Similarity=0.229  Sum_probs=18.2

Q ss_pred             CEEEEEecCCCCcHHHHHHHH
Q 037814          204 PRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      ..-+-++|..|+||||+|+.+
T Consensus        36 ~ha~Lf~Gp~G~GKt~lA~~l   56 (394)
T PRK07940         36 THAWLFTGPPGSGRSVAARAF   56 (394)
T ss_pred             CeEEEEECCCCCcHHHHHHHH
Confidence            356779999999999999876

>PRK11670 antiporter inner membrane protein; Provisional

Probab=90.30  E-value=0.28  Score=41.41  Aligned_cols=21  Identities=33%  Similarity=0.525  Sum_probs=16.8

Q ss_pred             CEEEEEec-CCCCcHHHHHHHH
Q 037814          204 PRIISLVG-MGGIGKTTLAQFA  224 (229)
Q Consensus       204 ~~Vi~IvG-~gGvGKTTLa~~v  224 (229)
                      .+||+|.. -||+||||++-.+
T Consensus       107 ~~vIaV~S~KGGVGKTT~avNL  128 (369)
T PRK11670        107 KNIIAVSSGKGGVGKSSTAVNL  128 (369)
T ss_pred             CEEEEEeCCCCCCCHHHHHHHH
Confidence            57888864 5999999998654

>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=90.25  E-value=0.4  Score=40.92  Aligned_cols=20  Identities=40%  Similarity=0.584  Sum_probs=18.3

Q ss_pred             EEEEecCCCCcHHHHHHHHh
Q 037814          206 IISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       206 Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      ++.|+|.-++|||||++.+-
T Consensus        39 i~~i~GpR~~GKTtll~~l~   58 (398)
T COG1373          39 IILILGPRQVGKTTLLKLLI   58 (398)
T ss_pred             EEEEECCccccHHHHHHHHH
Confidence            99999999999999997754

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]

Probab=90.21  E-value=0.46  Score=38.74  Aligned_cols=42  Identities=31%  Similarity=0.234  Sum_probs=35.0

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      .+++|-+..+..|..-|...      .+.+.-.+|.+|.|||+-|...
T Consensus        36 de~~gQe~vV~~L~~a~~~~------~lp~~LFyGPpGTGKTStalaf   77 (346)
T KOG0989|consen   36 DELAGQEHVVQVLKNALLRR------ILPHYLFYGPPGTGKTSTALAF   77 (346)
T ss_pred             HhhcchHHHHHHHHHHHhhc------CCceEEeeCCCCCcHhHHHHHH
Confidence            36899999999999888763      3678899999999999977654

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=90.21  E-value=0.28  Score=50.29  Aligned_cols=23  Identities=30%  Similarity=0.504  Sum_probs=20.8

Q ss_pred             EEEEEecCCCCcHHHHHHHHhcC
Q 037814          205 RIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .+++|+|..|.|||||.+.+...
T Consensus      1966 Ei~gLLG~NGAGKTTLlkmL~Gl 1988 (2272)
T TIGR01257      1966 ECFGLLGVNGAGKTTTFKMLTGD 1988 (2272)
T ss_pred             cEEEEECCCCCcHHHHHHHHhCC
Confidence            58999999999999999998754

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK13796 GTPase YqeH; Provisional

Probab=90.21  E-value=0.43  Score=40.27  Aligned_cols=22  Identities=32%  Similarity=0.481  Sum_probs=19.3

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ..+.|||+.++||+||...+..
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~  182 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIK  182 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHh
Confidence            3678999999999999998864

>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]

Probab=90.18  E-value=0.41  Score=39.33  Aligned_cols=19  Identities=42%  Similarity=0.569  Sum_probs=14.8

Q ss_pred             EEEecCCCCcHHHHHHHHh
Q 037814          207 ISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       207 i~IvG~gGvGKTTLa~~vy  225 (229)
                      .-|+|.||+|||||+-..+
T Consensus        92 ~~~~gdsg~GKttllL~l~  110 (402)
T COG3598          92 SILYGDSGVGKTTLLLYLC  110 (402)
T ss_pred             EEEecCCcccHhHHHHHHH
Confidence            3355999999999986643

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=90.16  E-value=0.26  Score=43.09  Aligned_cols=24  Identities=29%  Similarity=0.455  Sum_probs=21.1

Q ss_pred             EEEEEecCCCCcHHHHHHHHhcCC
Q 037814          205 RIISLVGMGGIGKTTLAQFAYNND  228 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~d~  228 (229)
                      .-.+|+|.+|.||||+.+.||..+
T Consensus       102 ~rygLiG~nG~Gkst~L~~i~~~e  125 (614)
T KOG0927|consen  102 RRYGLIGPNGSGKSTFLRAIAGRE  125 (614)
T ss_pred             ceEEEEcCCCCcHhHHHHHHhcCC
Confidence            568999999999999999998653

>PRK12678 transcription termination factor Rho; Provisional

Probab=90.14  E-value=0.27  Score=43.67  Aligned_cols=22  Identities=32%  Similarity=0.154  Sum_probs=19.5

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .-..|||..|+|||||++.|-|
T Consensus       417 QR~LIvgpp~aGKTtLL~~IAn  438 (672)
T PRK12678        417 QRGLIVSPPKAGKTTILQNIAN  438 (672)
T ss_pred             CEeEEeCCCCCCHHHHHHHHHH
Confidence            4578999999999999999876

>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI

Probab=90.00  E-value=0.33  Score=41.57  Aligned_cols=24  Identities=25%  Similarity=0.408  Sum_probs=20.9

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhcC
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      =..++|+|-.|+|||||++.+.+.
T Consensus       137 Gqri~I~G~sG~GKTtLl~~i~~~  160 (413)
T TIGR03497       137 GQRVGIFAGSGVGKSTLLGMIARN  160 (413)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            368999999999999999988753

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51

Probab=89.96  E-value=0.39  Score=38.38  Aligned_cols=24  Identities=33%  Similarity=0.353  Sum_probs=20.2

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      ..-.|.=|+|.+|+|||.|+-+++
T Consensus        36 ~~g~itEi~G~~gsGKTql~l~l~   59 (256)
T PF08423_consen   36 PTGSITEIVGESGSGKTQLCLQLA   59 (256)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCCcEEEEEEecccccchHHHHHH
Confidence            445799999999999999987654

It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	229
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	1e-23
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	1e-23
3qfl_A	115	MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-	2e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-12
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	6e-07

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 97.4 bits (242), Expect = 1e-23
 Identities = 26/184 (14%), Positives = 51/184 (27%), Gaps = 17/184 (9%)

Query: 48  VLHDAEKRQVKEETVRLWLDQLRDACYDMEDVLGEWNTARLKLQIDGVDDHLNDALVPKK 107
            L  A  R + +   R  L  L       ED              + +            
Sbjct: 9   ALSTAHTRLIHDFEPRDALTYLEGKNIFTED------------HSELISKMSTRLERIAN 56

Query: 108 KVCSLFPAASCFARKPLVLRRDIALKIKEINETLDDIAKQRDMF--GFAVNVIKSNERAD 165
            +      AS           +    + +  E   D A           +    S +  D
Sbjct: 57  FLRIYRRQASELGPLIDFFNYNNQSHLADFLEDYIDFAINEPDLLRPVVIAPQFSRQMLD 116

Query: 166 QRVPSISSIDESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY 225
           +++   +   +   + RE   + ++ +L      +      + L G  G GK+ +A  A 
Sbjct: 117 RKLLLGNVPKQMTCYIREYHVDRVIKKLDEMCDLD---SFFLFLHGRAGSGKSVIASQAL 173

Query: 226 NNDD 229
           +  D
Sbjct: 174 SKSD 177

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 97.2 bits (242), Expect = 1e-23
 Identities = 25/182 (13%), Positives = 56/182 (30%), Gaps = 14/182 (7%)

Query: 51  DAEKRQVKEETVRLWLDQLRDACYDMEDVLGEWNTARLKLQIDGVDDHLNDALVPKKKVC 110
           DA+ R      ++      +D       ++    +       +  ++ + +    +++  
Sbjct: 2   DAKARNC---LLQHREALEKD--IKTSYIMDHMISDGFLTISE--EEKVRNEPTQQQRAA 54

Query: 111 SLFPAASCFARKPLVLRRDIAL--KIKEINETLDDIAKQRDMFGFAVNVIKSNERADQRV 168
            L            V   +  L    K++   L D            +V          +
Sbjct: 55  MLIKMILKKDNDSYVSFYNALLHEGYKDLAALLHDGIPVVSSSSGKDSVSGITSYVRTVL 114

Query: 169 PSISSIDESEIF-GREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN 227
                     +F  R+K  N +  +L     + +  P  +++ GM G GK+ LA  A  +
Sbjct: 115 CEGGVPQRPVVFVTRKKLVNAIQQKLS----KLKGEPGWVTIHGMAGCGKSVLAAEAVRD 170

Query: 228 DD 229
             
Sbjct: 171 HS 172

>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare} Length = 115

 Score = 63.7 bits (155), Expect = 2e-13
 Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 17/128 (13%)

Query: 6   ISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKRQVKE--ETVR 63
           IS L+ +L  +  EE K    L  GV K ++ L   L ++ A L    +   ++     +
Sbjct: 3   ISNLIPKLGELLTEEFK----LHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDK 58

Query: 64  LWLDQLRDACYDMEDVLGEWNTARLKLQIDGVDDHLNDALVPKKKVCSLFPAASCFARKP 123
           LW D++R+  Y +EDV+ ++    +++     DD+ N      K+   L         K 
Sbjct: 59  LWADEVRELSYVIEDVVDKF---LVQVDGIKSDDNNNKFKGLMKRTTELL--------KK 107

Query: 124 LVLRRDIA 131
           +  +  IA
Sbjct: 108 VKHKHGIA 115

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.3 bits (153), Expect = 7e-12
 Identities = 31/195 (15%), Positives = 63/195 (32%), Gaps = 49/195 (25%)

Query: 46  QAVLHDAEKRQVKEETVRLWLDQLRDACYDMEDVLGEWNTARLKLQIDGVDDHLNDALVP 105
           + +L   E   V         D     C D++D+       +  L  + +D  +      
Sbjct: 19  KDILSVFEDAFVDN------FD-----CKDVQDMP------KSILSKEEIDHIIMSK-DA 60

Query: 106 KKKVCSLFPAASCFARKPLVLRRDIALKIKEINETLDDIAKQRDMFGFAVNVIK--SNER 163
                 LF        K            +E+ +   +   + + + F ++ IK    + 
Sbjct: 61  VSGTLRLF---WTLLSKQ-----------EEMVQKFVEEVLRIN-YKFLMSPIKTEQRQP 105

Query: 164 ADQRVPSISSID----ESEIFG-----REKEKNELVNRLLCESSEERKGPRIISLVGMGG 214
           +      I   D    ++++F      R +   +L   LL    E R    ++ + G+ G
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL----ELRPAKNVL-IDGVLG 160

Query: 215 IGKTTLAQFAYNNDD 229
            GKT +A     +  
Sbjct: 161 SGKTWVALDVCLSYK 175

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 48.7 bits (116), Expect = 6e-07
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 8/55 (14%)

Query: 168 VPSISSIDESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQ 222
           VP    I       R+K  + +  +L   + E    P  +++ GM G GK+ LA 
Sbjct: 119 VPQRPVI----FVTRKKLVHAIQQKLWKLNGE----PGWVTIYGMAGCGKSVLAA 165

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	229
3qfl_A	115	MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-	99.79
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.26
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.1
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	98.93
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	98.83
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	98.33
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	98.19
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	98.19
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	98.1
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	98.08
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	98.05
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.02
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	98.0
2chg_A	226	Replication factor C small subunit; DNA-binding pr	97.96
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	97.68
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	97.66
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.64
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.57
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.56
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	97.52
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.51
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	97.47
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	97.47
3co5_A	143	Putative two-component system transcriptional RES	97.43
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	97.38
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.37
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.36
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.36
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.35
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	97.35
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	97.34
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	97.33
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	97.33
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	97.29
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.29
2chq_A	319	Replication factor C small subunit; DNA-binding pr	97.29
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	97.25
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.21
3bos_A	242	Putative DNA replication factor; P-loop containing	97.21
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	97.2
3pvs_A	447	Replication-associated recombination protein A; ma	97.2
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	97.19
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.17
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	97.17
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.15
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.13
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	97.13
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	97.11
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.11
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.09
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.07
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.04
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.03
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	97.03
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.02
2ged_A	193	SR-beta, signal recognition particle receptor beta	97.02
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.01
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	97.01
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.99
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.98
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.97
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.97
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.96
2og2_A	359	Putative signal recognition particle receptor; nuc	96.94
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	96.92
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.91
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.89
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.86
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	96.85
2r44_A	331	Uncharacterized protein; putative ATPase, structur	96.83
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.82
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.81
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	96.8
2xxa_A	433	Signal recognition particle protein; protein trans	96.79
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.79
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.76
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.75
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.75
1sgw_A	214	Putative ABC transporter; structural genomics, P p	96.75
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.73
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.72
3fwy_A	314	Light-independent protochlorophyllide reductase I	96.72
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.71
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.7
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	96.7
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.69
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.69
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.67
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.67
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.66
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	96.65
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.64
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.63
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.62
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.57
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.55
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	96.54
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	96.53
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.47
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.45
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.44
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.44
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	96.42
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.4
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.4
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.37
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.37
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.33
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.33
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	96.31
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	96.31
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.3
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	96.29
3end_A	307	Light-independent protochlorophyllide reductase ir	96.29
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.29
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.26
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	96.25
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.23
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	96.21
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.19
2qgz_A	308	Helicase loader, putative primosome component; str	96.19
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.17
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.16
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	96.16
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.14
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	96.13
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.09
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.07
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.07
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	96.05
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.04
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	96.02
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	96.0
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.0
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	95.96
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	95.94
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.92
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	95.92
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.91
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	95.9
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	95.9
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	95.9
1p9r_A	418	General secretion pathway protein E; bacterial typ	95.89
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	95.86
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.84
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	95.83
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	95.79
2ewv_A	372	Twitching motility protein PILT; pilus retraction	95.79
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	95.79
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	95.77
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	95.77
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.76
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	95.76
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	95.75
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.71
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.67
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	95.67
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.63
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	95.6
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	95.53
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	95.53
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	95.53
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.53
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	95.52
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	95.46
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	95.42
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	95.41
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.41
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.39
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	95.38
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	95.35
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	95.24
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	95.22
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.21
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.2
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	95.2
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	95.18
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	95.17
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	95.14
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	95.12
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	95.1
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	94.96
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	94.92
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	94.9
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	94.84
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	94.82
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	94.82
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	94.79
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	94.77
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	94.71
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	94.66
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	94.65
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	94.62
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	94.59
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	94.52
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	94.52
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	94.45
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	94.4
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	94.39
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	94.36
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	94.33
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	94.33
3ez2_A	398	Plasmid partition protein A; type IA, DNA binding,	94.32
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	94.27
1u94_A	356	RECA protein, recombinase A; homologous recombinat	94.24
2z43_A	324	DNA repair and recombination protein RADA; archaea	94.19
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	94.04
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	94.04
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	93.97
3ice_A	422	Transcription termination factor RHO; transcriptio	93.96
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	93.8
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	93.68
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	93.68
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	93.61
2r6a_A	454	DNAB helicase, replicative helicase; replication,	93.43
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	93.4
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	93.35
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	93.33
3ez9_A	403	Para; DNA binding, winged-HTH, partition, biosynth	93.17
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	93.12
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	92.96
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	92.7
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	92.67
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	92.66
1xp8_A	366	RECA protein, recombinase A; recombination, radior	92.59
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	92.59
3vkw_A	446	Replicase large subunit; alpha/beta domain, helica	92.58
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	92.54
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	92.34
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	92.32
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	92.14
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	92.12
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	92.07
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	92.05
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	91.99
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	91.97
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	91.85
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	91.85
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	91.81
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	91.68
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	91.68
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	91.53
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	91.53
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	91.35
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	91.26
3l0o_A	427	Transcription termination factor RHO; helicase, RH	91.2
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	90.96
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	90.95
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	90.89
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	90.89
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	90.85
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	90.74
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	90.21
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	90.05
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	90.04
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	89.63
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	89.45
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	89.45
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	89.22
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	88.87
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	88.56
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	88.43
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	88.39
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	87.76
1fx0_B	498	ATP synthase beta chain; latent ATPase, thermal st	87.12
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	86.1
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	86.08
3gqb_B	464	V-type ATP synthase beta chain; A3B3, V-ATPase, AT	85.95
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	85.91
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	85.91
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	85.69
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	85.43
3vr4_D	465	V-type sodium ATPase subunit D; V-ATPase, rotary m	85.41
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	85.17
2c61_A	469	A-type ATP synthase non-catalytic subunit B; hydro	85.04
3vr4_A	600	V-type sodium ATPase catalytic subunit A; V-ATPase	84.61
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	84.58
3mfy_A	588	V-type ATP synthase alpha chain; A-type ATP syntha	84.36
3gqb_A	578	V-type ATP synthase alpha chain; A3B3, V-ATPase, A	84.02
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	83.32
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	83.13
2olr_A	540	Phosphoenolpyruvate carboxykinase; carbon dioxide,	83.05
1ytm_A	532	Phosphoenolpyruvate carboxykinase [ATP], phosphoen	82.97
2wjy_A	800	Regulator of nonsense transcripts 1; nonsense medi	82.95
1ii2_A	524	Phosphoenolpyruvate carboxykinase; phosphate bindi	82.82
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	82.7
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	81.89
1j3b_A	529	ATP-dependent phosphoenolpyruvate carboxykinase; a	81.38
1e9r_A	437	Conjugal transfer protein TRWB; coupling protein,	81.37
2r9v_A	515	ATP synthase subunit alpha; TM1612, structural gen	81.18
2qe7_A	502	ATP synthase subunit alpha; blockage of ATP hydrol	81.01
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	80.95

>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}

Probab=99.79  E-value=2.5e-20  Score=129.15  Aligned_cols=80  Identities=28%  Similarity=0.457  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhc--ccCcHHHHHHHHHHHHHhhhhhhhhh
Q 037814            4 AIISPLLEQLISVAVEEAKEQVRLVTGVGKEVKKLTSSLRAVQAVLHDAEKR--QVKEETVRLWLDQLRDACYDMEDVLG   81 (229)
Q Consensus         4 ~~v~~~~~~l~~~l~~~l~~~~~~~~~~~~~l~~L~~~l~~i~~~l~~a~~~--~~~~~~~~~wl~~l~~~~yd~eD~lD   81 (229)
                      |+|+++++++.+.    +.+++.++.+++++++.|+++|+.|++||.+++..  ...++.++.|+.+||+++||+||+||
T Consensus         1 a~v~~ll~KL~~l----l~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD   76 (115)
T 3qfl_A            1 AAISNLIPKLGEL----LTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVD   76 (115)
T ss_dssp             CTTCSHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHH----HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567778888777    78999999999999999999999999999999987  45789999999999999999999999


Q ss_pred             hhHHHH
Q 037814           82 EWNTAR   87 (229)
Q Consensus        82 ~~~~~~   87 (229)
                      +|.|..
T Consensus        77 ~f~~~~   82 (115)
T 3qfl_A           77 KFLVQV   82 (115)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999765

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.26  E-value=4.5e-12  Score=110.57  Aligned_cols=44  Identities=23%  Similarity=0.289  Sum_probs=39.8

Q ss_pred             eechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          180 FGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       180 vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      |||+.++++|.++|.....   ...+||+||||||+||||||+.||+
T Consensus       131 ~GR~~~~~~l~~~L~~~~~---~~~~vv~I~G~gGvGKTtLA~~v~~  174 (549)
T 2a5y_B          131 YIREYHVDRVIKKLDEMCD---LDSFFLFLHGRAGSGKSVIASQALS  174 (549)
T ss_dssp             CCCHHHHHHHHHHHHHHTT---SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHhcccC---CCceEEEEEcCCCCCHHHHHHHHHH
Confidence            6999999999999976532   5689999999999999999999997

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.10  E-value=3.7e-11  Score=113.38  Aligned_cols=48  Identities=25%  Similarity=0.338  Sum_probs=42.9

Q ss_pred             CCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          176 ESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       176 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .+.++||+.++++|.++|....    .+.++|+|+||||+||||||+.+|++
T Consensus       123 ~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~  170 (1249)
T 3sfz_A          123 PVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRD  170 (1249)
T ss_dssp             CSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred             CceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence            3569999999999999997654    55899999999999999999999986

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=98.93  E-value=1.3e-09  Score=95.69  Aligned_cols=47  Identities=28%  Similarity=0.350  Sum_probs=41.6

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      +.+|||+.+++.|.++|....    .+.++|+|+||||+||||||+.+|++
T Consensus       124 ~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~  170 (591)
T 1z6t_A          124 VVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRD  170 (591)
T ss_dssp             SSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred             CeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhc
Confidence            469999999999999997543    45789999999999999999999975

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=98.83  E-value=1.6e-09  Score=99.20  Aligned_cols=45  Identities=22%  Similarity=0.080  Sum_probs=39.7

Q ss_pred             ceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcCC
Q 037814          179 IFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNND  228 (229)
Q Consensus       179 ~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d~  228 (229)
                      .+||+.++++|.++|...+     +.+||+||||||+||||||+.+|++.
T Consensus       130 ~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~  174 (1221)
T 1vt4_I          130 NVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSY  174 (1221)
T ss_dssp             CCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHC
T ss_pred             CCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhh
Confidence            4999999999999998532     36899999999999999999999753

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=98.33  E-value=2.2e-07  Score=77.66  Aligned_cols=51  Identities=31%  Similarity=0.266  Sum_probs=36.9

Q ss_pred             CcceechhhHHHHHHHh-hcCCCC--CCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          177 SEIFGREKEKNELVNRL-LCESSE--ERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L-~~~~~~--~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ..++||+.+++.|.++| ......  .....-+|+|+|++|+|||||++.+++.
T Consensus        22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~   75 (412)
T 1w5s_A           22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKR   75 (412)
T ss_dssp             SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHH
T ss_pred             CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHH
Confidence            57999999999999998 421100  0122344444999999999999998863

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=98.19  E-value=1.8e-06  Score=63.86  Aligned_cols=44  Identities=23%  Similarity=0.356  Sum_probs=36.9

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ..++|++.+++.+.++|....      ...+-|+|..|+||||||+.+.+
T Consensus        22 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~~~~   65 (195)
T 1jbk_A           22 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSCHHHHHHHHHH
T ss_pred             cccccchHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHH
Confidence            358999999999999987643      34567999999999999998865

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.19  E-value=1.2e-06  Score=72.33  Aligned_cols=49  Identities=24%  Similarity=0.371  Sum_probs=39.7

Q ss_pred             CCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          176 ESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       176 ~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ...++||+.+++.|.++|.....  ......+.|+|.+|+|||||++.+++
T Consensus        19 p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~   67 (386)
T 2qby_A           19 PDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLS   67 (386)
T ss_dssp             CSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHH
Confidence            36799999999999999874210  13356889999999999999999875

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=98.10  E-value=2.8e-06  Score=62.67  Aligned_cols=44  Identities=23%  Similarity=0.292  Sum_probs=36.7

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|++.+++.+.++|....      ..-+-|+|..|+||||||+.+.+
T Consensus        22 ~~~~g~~~~~~~l~~~l~~~~------~~~vll~G~~G~GKT~la~~~~~   65 (187)
T 2p65_A           22 DPVIGRDTEIRRAIQILSRRT------KNNPILLGDPGVGKTAIVEGLAI   65 (187)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSS------SCEEEEESCGGGCHHHHHHHHHH
T ss_pred             chhhcchHHHHHHHHHHhCCC------CCceEEECCCCCCHHHHHHHHHH
Confidence            358999999999999996533      34567999999999999998864

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=98.08  E-value=2.6e-06  Score=65.38  Aligned_cols=44  Identities=25%  Similarity=0.385  Sum_probs=37.7

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +++|++..++.|..+|.....     ..++.|+|.+|+||||||+.+++
T Consensus        24 ~~~g~~~~~~~l~~~l~~~~~-----~~~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           24 DVVGQEHVLTALANGLSLGRI-----HHAYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             GCCSCHHHHHHHHHHHHHTCC-----CSEEEEECSTTSCHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHcCCC-----CeEEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999975432     35888999999999999999865

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=98.05  E-value=3.4e-06  Score=69.64  Aligned_cols=48  Identities=27%  Similarity=0.319  Sum_probs=39.2

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ..++||+.+++.|..+|...-.  ......+-|+|.+|+||||||+.+++
T Consensus        19 ~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~   66 (387)
T 2v1u_A           19 DVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLR   66 (387)
T ss_dssp             SCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999854311  13356888999999999999999875

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.02  E-value=3.7e-06  Score=69.56  Aligned_cols=50  Identities=20%  Similarity=0.116  Sum_probs=39.0

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ..++||+.+++.|..+|...........+.+.|+|..|+|||||++.+.+
T Consensus        17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~   66 (389)
T 1fnn_A           17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE   66 (389)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence            57999999999999998753110012334899999999999999999875

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.00  E-value=5e-06  Score=68.73  Aligned_cols=48  Identities=21%  Similarity=0.210  Sum_probs=38.8

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ..++||+.+++.|..+|..-..  ......+-|+|.+|+||||||+.+++
T Consensus        20 ~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~   67 (384)
T 2qby_B           20 KEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFN   67 (384)
T ss_dssp             SSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999988854211  13346899999999999999999986

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=97.96  E-value=6.1e-06  Score=62.43  Aligned_cols=44  Identities=20%  Similarity=0.210  Sum_probs=37.0

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|++..++.|.+++....      ...+-|+|.+|+||||||+.+.+
T Consensus        17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHH
Confidence            358999999999999997643      23388999999999999999875

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.68  E-value=3e-05  Score=62.30  Aligned_cols=44  Identities=27%  Similarity=0.312  Sum_probs=37.0

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|++..++.|.+++..+.      ...+-|+|.+|+||||||+.+.+
T Consensus        21 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~   64 (323)
T 1sxj_B           21 SDIVGNKETIDRLQQIAKDGN------MPHMIISGMPGIGKTTSVHCLAH   64 (323)
T ss_dssp             GGCCSCTHHHHHHHHHHHSCC------CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHH
Confidence            358999999999999997654      22388999999999999998865

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=97.66  E-value=3.9e-05  Score=61.78  Aligned_cols=44  Identities=27%  Similarity=0.284  Sum_probs=37.2

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|++..++.|..++..+.      ...+-|+|..|+||||+|+.+.+
T Consensus        25 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~l~~   68 (327)
T 1iqp_A           25 DDIVGQEHIVKRLKHYVKTGS------MPHLLFAGPPGVGKTTAALALAR   68 (327)
T ss_dssp             TTCCSCHHHHHHHHHHHHHTC------CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             HHhhCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHH
Confidence            358999999999999997653      33488999999999999999875

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.64  E-value=3.6e-05  Score=54.84  Aligned_cols=46  Identities=28%  Similarity=0.304  Sum_probs=34.3

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      +++|....+.++.+.+..-..   .+.. |-|+|..|+|||+||+.+++.
T Consensus         2 ~iiG~s~~~~~~~~~~~~~a~---~~~~-vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A            2 ELIGRSEWINQYRRRLQQLSE---TDIA-VWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             --CCSSHHHHHHHHHHHHHTT---CCSC-EEEESSTTSSHHHHHHHHHHS
T ss_pred             CceeCCHHHHHHHHHHHHHhC---CCCC-EEEECCCCCCHHHHHHHHHHh
Confidence            578999999999888753221   2233 569999999999999999864

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.57  E-value=5e-05  Score=56.00  Aligned_cols=42  Identities=19%  Similarity=0.215  Sum_probs=29.1

Q ss_pred             chhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          182 REKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       182 ~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .....+.+.+++.+-..   ..-..+.|+|..|+|||||++.+++
T Consensus        19 ~~~~~~~~~~~~~~~~~---~~g~~~~l~G~~G~GKTtL~~~i~~   60 (180)
T 3ec2_A           19 QNRALLTIRVFVHNFNP---EEGKGLTFVGSPGVGKTHLAVATLK   60 (180)
T ss_dssp             HHHHHHHHHHHHHSCCG---GGCCEEEECCSSSSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccc---cCCCEEEEECCCCCCHHHHHHHHHH
Confidence            34455555555543221   2246899999999999999999864

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.56  E-value=6.4e-05  Score=59.53  Aligned_cols=51  Identities=29%  Similarity=0.290  Sum_probs=37.4

Q ss_pred             CcceechhhHHHHHHHhhcCCCC-------CCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          177 SEIFGREKEKNELVNRLLCESSE-------ERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .+++|.+..++.|.+++...-..       ......-+-|+|.+|+||||||+.+.+.
T Consensus        17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            46999999999999887431000       0022355889999999999999998753

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=97.52  E-value=8.3e-05  Score=63.40  Aligned_cols=44  Identities=27%  Similarity=0.399  Sum_probs=35.9

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +.++|++.+++.+++.|.....      .-+-++|.+|+||||||+.+.+
T Consensus       180 d~iiGr~~~i~~l~~~l~r~~~------~~~LL~G~pG~GKT~la~~la~  223 (468)
T 3pxg_A          180 DPVIGRSKEIQRVIEVLSRRTK------NNPVLIGEPGVGKTAIAEGLAQ  223 (468)
T ss_dssp             CCCCCCHHHHHHHHHHHHCSSS------CEEEEESCTTTTTHHHHHHHHH
T ss_pred             CCccCcHHHHHHHHHHHhccCC------CCeEEECCCCCCHHHHHHHHHH
Confidence            3599999999999999975431      2346999999999999998764

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.51  E-value=7.9e-05  Score=60.72  Aligned_cols=44  Identities=18%  Similarity=0.178  Sum_probs=36.7

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|.+..++.|..++.....      ..+-|+|..|+||||||+.+.+
T Consensus        37 ~~i~g~~~~~~~l~~~l~~~~~------~~~ll~G~~G~GKT~la~~la~   80 (353)
T 1sxj_D           37 DEVTAQDHAVTVLKKTLKSANL------PHMLFYGPPGTGKTSTILALTK   80 (353)
T ss_dssp             TTCCSCCTTHHHHHHHTTCTTC------CCEEEECSTTSSHHHHHHHHHH
T ss_pred             HHhhCCHHHHHHHHHHHhcCCC------CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999876542      2378999999999999998764

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=97.47  E-value=0.0001  Score=60.54  Aligned_cols=44  Identities=25%  Similarity=0.385  Sum_probs=36.9

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +++|++..++.|..++..+..     ...+-|+|..|+||||||+.+.+
T Consensus        17 ~~vg~~~~~~~L~~~l~~~~~-----~~~~ll~G~~G~GKT~la~~la~   60 (373)
T 1jr3_A           17 DVVGQEHVLTALANGLSLGRI-----HHAYLFSGTRGVGKTSIARLLAK   60 (373)
T ss_dssp             TSCSCHHHHHHHHHHHHHTCC-----CSEEEEESCTTSSHHHHHHHHHH
T ss_pred             hccCcHHHHHHHHHHHHhCCC-----CeEEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999975432     24678999999999999998754

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=97.47  E-value=7.2e-05  Score=60.76  Aligned_cols=49  Identities=27%  Similarity=0.298  Sum_probs=37.9

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|.+..++.+..++..... .......|-|+|..|+||||||+.+.+
T Consensus        29 ~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~   77 (338)
T 3pfi_A           29 DGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISY   77 (338)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             HHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence            4689999999999998865310 012345678999999999999999865

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=97.43  E-value=4.2e-05  Score=54.39  Aligned_cols=46  Identities=17%  Similarity=0.271  Sum_probs=32.6

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      +++|.+..++++.+.+..-..   .... |-|+|..|+|||+||+.+++.
T Consensus         5 ~~iG~s~~~~~l~~~~~~~~~---~~~~-vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A            5 DKLGNSAAIQEMNREVEAAAK---RTSP-VFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             ---CCCHHHHHHHHHHHHHHT---CSSC-EEEEEETTCCHHHHHGGGCCT
T ss_pred             CceeCCHHHHHHHHHHHHHhC---CCCc-EEEECCCCccHHHHHHHHHHh
Confidence            578999999988888753211   1223 569999999999999998764

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.38  E-value=0.00016  Score=62.47  Aligned_cols=50  Identities=28%  Similarity=0.269  Sum_probs=38.7

Q ss_pred             CcceechhhHHHHHHHhhcCCC-----------CCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESS-----------EERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~-----------~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|++..++.|.+||.....           ......+.+-|+|..|+||||||+.+.+
T Consensus        39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~   99 (516)
T 1sxj_A           39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQ   99 (516)
T ss_dssp             GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999975110           0001346889999999999999999875

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.37  E-value=0.00012  Score=58.54  Aligned_cols=49  Identities=22%  Similarity=0.199  Sum_probs=34.4

Q ss_pred             cceechhhHHHHHHHhhcCC---------CCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLCES---------SEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~---------~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +++|.+..++.|.+++..-.         -.......-+-|+|..|+||||||+.+.+
T Consensus        32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~   89 (309)
T 3syl_A           32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAG   89 (309)
T ss_dssp             HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred             HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence            47899888888887654210         00013455788999999999999986653

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.36  E-value=0.00018  Score=57.60  Aligned_cols=51  Identities=27%  Similarity=0.225  Sum_probs=37.1

Q ss_pred             CcceechhhHHHHHHHhhcCC--C-----CCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          177 SEIFGREKEKNELVNRLLCES--S-----EERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~--~-----~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .+++|.+..++.|.+++...-  .     -.-.....|-|+|..|+||||||+.+.+.
T Consensus        15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence            468999999999888774310  0     00023457889999999999999998753

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.36  E-value=0.00016  Score=57.63  Aligned_cols=50  Identities=28%  Similarity=0.323  Sum_probs=36.7

Q ss_pred             CcceechhhHHHHHHHhhcCCC------CCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESS------EERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~------~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|.+..++.|.+++.....      .-.....-+-|+|..|+||||||+.+.+
T Consensus        21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred             HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence            4689999999999988743100      0001245778999999999999999865

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.35  E-value=0.00012  Score=59.50  Aligned_cols=48  Identities=31%  Similarity=0.363  Sum_probs=34.2

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +++|.+..++.|-..+..... .......+.++|..|+||||||+.+.+
T Consensus        26 ~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~   73 (334)
T 1in4_A           26 EFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIAS   73 (334)
T ss_dssp             GCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred             HccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence            578887777777666543210 002356799999999999999999864

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=97.35  E-value=5.9e-05  Score=60.78  Aligned_cols=49  Identities=31%  Similarity=0.396  Sum_probs=36.8

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|++..+..+..++..-.. .......+-|+|..|+||||||+.+.+
T Consensus        12 ~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~   60 (324)
T 1hqc_A           12 DEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAH   60 (324)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHH
T ss_pred             HHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999888753110 002235678999999999999999865

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=97.34  E-value=5.6e-05  Score=61.06  Aligned_cols=47  Identities=4%  Similarity=0.024  Sum_probs=37.5

Q ss_pred             ceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          179 IFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       179 ~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      +.||+++.+.|...|...-.  ......+-|+|.+|+|||++++.|.+.
T Consensus        22 L~~Re~E~~~i~~~L~~~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~   68 (318)
T 3te6_A           22 LKSQVEDFTRIFLPIYDSLM--SSQNKLFYITNADDSTKFQLVNDVMDE   68 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH--TTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            78999999999988764321  134567789999999999999998763

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=97.33  E-value=0.00024  Score=58.30  Aligned_cols=46  Identities=17%  Similarity=0.247  Sum_probs=34.5

Q ss_pred             CcceechhhHHH---HHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNE---LVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~---l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|.+..++.   +.+.+....    .....+-|+|..|+||||||+.+.+
T Consensus        44 ~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~   92 (368)
T 3uk6_A           44 QGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQ   92 (368)
T ss_dssp             TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHH
T ss_pred             hhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHH
Confidence            469999988776   455554433    2235788999999999999999864

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=97.33  E-value=0.00015  Score=59.54  Aligned_cols=50  Identities=26%  Similarity=0.317  Sum_probs=36.8

Q ss_pred             CcceechhhHHHHHHHhhcC---CC--C-CCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCE---SS--E-ERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~---~~--~-~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|.+..++.|.+++...   ..  . ......-|-|+|..|+||||||+.+.+
T Consensus        84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~  139 (357)
T 3d8b_A           84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS  139 (357)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred             HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence            46899999999998887420   00  0 002345688999999999999999865

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=97.29  E-value=0.00026  Score=57.25  Aligned_cols=50  Identities=28%  Similarity=0.328  Sum_probs=36.8

Q ss_pred             CcceechhhHHHHHHHhhcC---C---CCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCE---S---SEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~---~---~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|.+..++.|.+++...   .   ........-|-++|..|+|||+||+.|.+
T Consensus        18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~   73 (322)
T 3eie_A           18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT   73 (322)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHH
T ss_pred             HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence            46899999999999887210   0   00112345688999999999999999875

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.29  E-value=0.00021  Score=53.53  Aligned_cols=41  Identities=24%  Similarity=0.069  Sum_probs=28.5

Q ss_pred             hhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          184 KEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       184 ~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ...+.+.+++......  .....+-|+|.+|+||||||+.+++
T Consensus        36 ~~~~~~~~~~~~~~~~--~~~~~~~l~G~~GtGKT~la~~i~~   76 (202)
T 2w58_A           36 KAIRFAERFVAEYEPG--KKMKGLYLHGSFGVGKTYLLAAIAN   76 (202)
T ss_dssp             HHHHHHHHHHHHCCSS--CCCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhc--cCCCeEEEECCCCCCHHHHHHHHHH
Confidence            3445666666544210  1126788999999999999999875

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=97.29  E-value=0.0002  Score=57.31  Aligned_cols=44  Identities=20%  Similarity=0.210  Sum_probs=36.3

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|++..++.|.+++..+.      ...+-++|..|+||||+|+.+.+
T Consensus        17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~   60 (319)
T 2chq_A           17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALAR   60 (319)
T ss_dssp             GGSCSCHHHHHHHHTTTTTTC------CCCEEEESSSSSSHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHhCCC------CCeEEEECcCCcCHHHHHHHHHH
Confidence            358999999999999886543      23388999999999999998864

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=97.25  E-value=0.00028  Score=55.32  Aligned_cols=50  Identities=32%  Similarity=0.355  Sum_probs=33.9

Q ss_pred             CcceechhhHHHHHHHhhcCCCC------CCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESSE------ERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~------~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|.+..++.|.+++..-..+      ......-+-|+|..|+||||||+.+.+
T Consensus        11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHH
T ss_pred             HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence            46899998888888765410000      001112266999999999999999875

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.21  E-value=0.00018  Score=58.65  Aligned_cols=44  Identities=23%  Similarity=0.169  Sum_probs=34.6

Q ss_pred             CcceechhhHHHHHHHh-hcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRL-LCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L-~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|.+...+.+..++ ..+.     ... +.|+|..|+|||||++.+.+
T Consensus        14 ~~~vg~~~~~~~l~~~~~~~~~-----~~~-~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           14 NALSHNEELTNFLKSLSDQPRD-----LPH-LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             GGCCSCHHHHHHHHTTTTCTTC-----CCC-EEEECSTTSSHHHHHHTHHH
T ss_pred             HHhcCCHHHHHHHHHHHhhCCC-----CCe-EEEECCCCCCHHHHHHHHHH
Confidence            35899999999888887 4332     123 89999999999999998754

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.21  E-value=0.00038  Score=53.19  Aligned_cols=43  Identities=21%  Similarity=0.188  Sum_probs=29.8

Q ss_pred             cceec---hhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGR---EKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~---~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +++|.   +...+.+..++...      ....+-|+|..|+||||||+.+.+
T Consensus        29 ~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           29 SYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             TSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             hccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHH
Confidence            45652   34555666655432      246788999999999999998864

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=97.20  E-value=0.00036  Score=56.52  Aligned_cols=50  Identities=30%  Similarity=0.306  Sum_probs=36.4

Q ss_pred             CcceechhhHHHHHHHhhcC----C-C-CCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCE----S-S-EERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~----~-~-~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|.+..++.|.+.+...    + . ......+-|-++|..|+|||+||+.+.+
T Consensus        12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~   67 (322)
T 1xwi_A           12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT   67 (322)
T ss_dssp             GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHH
Confidence            46899999999888776310    0 0 0012346788999999999999999875

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=97.20  E-value=0.00025  Score=60.12  Aligned_cols=44  Identities=25%  Similarity=0.288  Sum_probs=35.0

Q ss_pred             CcceechhhH---HHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEK---NELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~---~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|.+..+   ..|...+..+.      +..+-|+|..|+||||||+.+.+
T Consensus        26 ~~ivGq~~~~~~~~~L~~~i~~~~------~~~vLL~GppGtGKTtlAr~ia~   72 (447)
T 3pvs_A           26 AQYIGQQHLLAAGKPLPRAIEAGH------LHSMILWGPPGTGKTTLAEVIAR   72 (447)
T ss_dssp             TTCCSCHHHHSTTSHHHHHHHHTC------CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHhCCcHHHHhchHHHHHHHHcCC------CcEEEEECCCCCcHHHHHHHHHH
Confidence            3588888777   66777776543      46788999999999999999875

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=97.19  E-value=0.00024  Score=65.02  Aligned_cols=44  Identities=25%  Similarity=0.419  Sum_probs=36.4

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +.++|++.++..++++|....      ..-+-++|.+|+||||||+.+.+
T Consensus       170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~  213 (854)
T 1qvr_A          170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQ  213 (854)
T ss_dssp             CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHH
T ss_pred             cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHH
Confidence            358999999999999997643      23457999999999999998764

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.17  E-value=0.00028  Score=55.01  Aligned_cols=50  Identities=28%  Similarity=0.321  Sum_probs=33.1

Q ss_pred             CcceechhhHHHHHHHh---hcCCCC---CCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRL---LCESSE---ERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L---~~~~~~---~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|.+..++.|.+++   .....-   ......-+.|+|..|+||||||+.+.+
T Consensus        12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence            46899988888776553   221100   001123377999999999999999865

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=97.17  E-value=0.00039  Score=56.08  Aligned_cols=46  Identities=24%  Similarity=0.181  Sum_probs=38.3

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .+++|.+..++.|.+++..+..     ..++-+.|..|+||||||+.+.+.
T Consensus        26 ~~ivg~~~~~~~l~~~l~~~~~-----~~~~L~~G~~G~GKT~la~~la~~   71 (324)
T 3u61_B           26 DECILPAFDKETFKSITSKGKI-----PHIILHSPSPGTGKTTVAKALCHD   71 (324)
T ss_dssp             TTSCCCHHHHHHHHHHHHTTCC-----CSEEEECSSTTSSHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHcCCC-----CeEEEeeCcCCCCHHHHHHHHHHH
Confidence            4689999999999999985532     367888899999999999998753

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.15  E-value=0.00036  Score=63.02  Aligned_cols=44  Identities=27%  Similarity=0.413  Sum_probs=36.2

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ..++|++.+++.++++|.....     .. +-++|.+|+||||+|+.+.+
T Consensus       180 d~iiG~~~~i~~l~~~l~~~~~-----~~-vLL~G~pGtGKT~la~~la~  223 (758)
T 3pxi_A          180 DPVIGRSKEIQRVIEVLSRRTK-----NN-PVLIGEPGVGKTAIAEGLAQ  223 (758)
T ss_dssp             CCCCCCHHHHHHHHHHHHCSSS-----CE-EEEESCTTTTTHHHHHHHHH
T ss_pred             CCccCchHHHHHHHHHHhCCCC-----CC-eEEECCCCCCHHHHHHHHHH
Confidence            3599999999999999976432     23 56999999999999998754

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.13  E-value=0.00027  Score=56.34  Aligned_cols=50  Identities=24%  Similarity=0.374  Sum_probs=35.4

Q ss_pred             CcceechhhHHHHHHHhhcC--CCC------CCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCE--SSE------ERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~--~~~------~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ..++|.+..++.|...+...  ...      ......-+-|+|..|+||||||+.+.+
T Consensus        15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHH
Confidence            35899999999998877541  000      001234566999999999999999864

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=97.13  E-value=0.00044  Score=62.40  Aligned_cols=44  Identities=32%  Similarity=0.363  Sum_probs=36.4

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ..++|++.+++.+++.|....      ..-+-|+|..|+||||||+.+.+
T Consensus       186 d~~iGr~~~i~~l~~~l~~~~------~~~vlL~G~~GtGKT~la~~la~  229 (758)
T 1r6b_X          186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAW  229 (758)
T ss_dssp             CCCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCccCCHHHHHHHHHHHhccC------CCCeEEEcCCCCCHHHHHHHHHH
Confidence            358999999999999997543      23457999999999999998764

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=97.11  E-value=0.00081  Score=52.82  Aligned_cols=47  Identities=19%  Similarity=0.122  Sum_probs=33.3

Q ss_pred             CcceechhhHHHHHH-------HhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVN-------RLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~-------~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ..++|.....+.++.       .+....   .....-+-|+|..|+||||||+.+.+
T Consensus        33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~---~~~~~~vLl~G~~GtGKT~la~~ia~   86 (272)
T 1d2n_A           33 NGIIKWGDPVTRVLDDGELLVQQTKNSD---RTPLVSVLLEGPPHSGKTALAAKIAE   86 (272)
T ss_dssp             TCCCCCSHHHHHHHHHHHHHHHHHHHCS---SCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCCCccHHHHHHHHHHHHHHHHHhccC---CCCCeEEEEECCCCCcHHHHHHHHHH
Confidence            357788777666665       332111   13457788999999999999999865

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.11  E-value=0.0006  Score=54.49  Aligned_cols=49  Identities=16%  Similarity=0.297  Sum_probs=36.3

Q ss_pred             cceechhhHHHHHHHhhcCC---CCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLCES---SEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~---~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .++|.+..++.|...+....   .........+.++|..|+||||||+.+.+
T Consensus        18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~   69 (311)
T 4fcw_A           18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA   69 (311)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHH
Confidence            47888888888887775431   00113356899999999999999998764

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.09  E-value=0.00045  Score=52.54  Aligned_cols=24  Identities=29%  Similarity=0.365  Sum_probs=21.1

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHhc
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ...+|.|+|.+|+|||||+..+..
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~   60 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLID   60 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHH
Confidence            468999999999999999988754

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.07  E-value=0.00044  Score=56.28  Aligned_cols=43  Identities=16%  Similarity=0.153  Sum_probs=34.7

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +++|.+..++.|..++..+.      +.-+.++|..|+||||||+.+.+
T Consensus        26 ~~~g~~~~~~~L~~~i~~g~------~~~~ll~Gp~G~GKTtla~~la~   68 (340)
T 1sxj_C           26 EVYGQNEVITTVRKFVDEGK------LPHLLFYGPPGTGKTSTIVALAR   68 (340)
T ss_dssp             GCCSCHHHHHHHHHHHHTTC------CCCEEEECSSSSSHHHHHHHHHH
T ss_pred             HhcCcHHHHHHHHHHHhcCC------CceEEEECCCCCCHHHHHHHHHH
Confidence            57898888888888887554      22388999999999999998754

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.04  E-value=0.00067  Score=53.61  Aligned_cols=49  Identities=29%  Similarity=0.291  Sum_probs=32.6

Q ss_pred             CcceechhhHHHHHHHhhcC--CC------CCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCE--SS------EERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~--~~------~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .++.|.++.++.|.+.+...  ..      +-...-. +.++|..|+||||||+.+.+
T Consensus        10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~   66 (274)
T 2x8a_A           10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVAN   66 (274)
T ss_dssp             --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHH
Confidence            46889998888887654210  00      0011223 99999999999999999864

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.03  E-value=0.00042  Score=50.09  Aligned_cols=21  Identities=38%  Similarity=0.368  Sum_probs=19.7

Q ss_pred             EEEEEecCCCCcHHHHHHHHh
Q 037814          205 RIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+++|+|..|.|||||++.+.
T Consensus        34 e~v~L~G~nGaGKTTLlr~l~   54 (158)
T 1htw_A           34 IMVYLNGDLGAGKTTLTRGML   54 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            699999999999999999875

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=97.03  E-value=0.00052  Score=56.97  Aligned_cols=51  Identities=29%  Similarity=0.314  Sum_probs=37.1

Q ss_pred             CcceechhhHHHHHHHhhcCCC------CCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          177 SEIFGREKEKNELVNRLLCESS------EERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~------~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .+++|.+..++.|.+++.....      .-.....-|-|+|..|+|||+||+.|.+.
T Consensus       115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~  171 (389)
T 3vfd_A          115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE  171 (389)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence            4699999999999988732100      00012356789999999999999998653

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.02  E-value=0.00073  Score=54.61  Aligned_cols=41  Identities=24%  Similarity=0.357  Sum_probs=28.4

Q ss_pred             hhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          183 EKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       183 ~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      ......+..-+....  ......||+|.|..|+|||||++.+.
T Consensus        73 ~~~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~  113 (321)
T 3tqc_A           73 RQTLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLK  113 (321)
T ss_dssp             HHHHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHH
T ss_pred             hHHHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHH
Confidence            334444444444432  12567899999999999999999874

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=97.02  E-value=0.00077  Score=49.73  Aligned_cols=26  Identities=23%  Similarity=0.236  Sum_probs=22.1

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .....|.|+|..|+|||||...+.+.
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            44567899999999999999988764

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.01  E-value=0.0006  Score=52.97  Aligned_cols=49  Identities=31%  Similarity=0.374  Sum_probs=31.7

Q ss_pred             CcceechhhHHHHHHHhhcCCCC-------CCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESSE-------ERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|.+..+..+.++...-...       -..... +.|+|..|+|||||++.+.+
T Consensus        16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~   71 (254)
T 1ixz_A           16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAG   71 (254)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHH
T ss_pred             HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHH
Confidence            46889877766665543211000       001123 88999999999999999875

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=97.01  E-value=0.00064  Score=55.79  Aligned_cols=50  Identities=28%  Similarity=0.324  Sum_probs=35.9

Q ss_pred             CcceechhhHHHHHHHhhcC----C--CCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCE----S--SEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~----~--~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|.+..++.|.+.+...    .  .......+-|-|+|..|+|||+||+.+.+
T Consensus        51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~  106 (355)
T 2qp9_X           51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVAT  106 (355)
T ss_dssp             GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHH
Confidence            46899999999998877321    0  00012234577999999999999999875

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.99  E-value=0.00054  Score=55.19  Aligned_cols=24  Identities=33%  Similarity=0.416  Sum_probs=21.4

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      ..-.+|+|+|..|+|||||++.+.
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~  111 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQ  111 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHH
Confidence            446899999999999999999875

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.98  E-value=0.00071  Score=55.58  Aligned_cols=49  Identities=29%  Similarity=0.335  Sum_probs=34.9

Q ss_pred             cceechhhHHHHHHHhhcC-------C--CCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLCE-------S--SEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~-------~--~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .++|.+..++.|...+...       .  .........|-++|..|+|||+||+.+.+
T Consensus        16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~   73 (363)
T 3hws_A           16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR   73 (363)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence            3789998888888777210       0  00012346788999999999999999865

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.97  E-value=0.001  Score=53.62  Aligned_cols=37  Identities=30%  Similarity=0.117  Sum_probs=26.4

Q ss_pred             HHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          186 KNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       186 ~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ...+..++....    .....+-|+|..|+||||||+.+.+
T Consensus        23 ~~~~~~~~~~~~----~~~~~lll~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           23 YEVVKEALENLG----SLYNPIFIYGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             HHHHHHHHHTTT----TSCSSEEEECSSSSSHHHHHHHHHH
T ss_pred             HHHHHHHHhCcC----CCCCeEEEECCCCCcHHHHHHHHHH
Confidence            344555554332    2346788999999999999999875

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.97  E-value=0.00027  Score=50.58  Aligned_cols=22  Identities=32%  Similarity=0.344  Sum_probs=20.2

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ..+.|+|..|+|||||++.+++
T Consensus        37 ~~~~l~G~~G~GKTtL~~~i~~   58 (149)
T 2kjq_A           37 QFIYVWGEEGAGKSHLLQAWVA   58 (149)
T ss_dssp             SEEEEESSSTTTTCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999875

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.96  E-value=0.00082  Score=54.53  Aligned_cols=24  Identities=38%  Similarity=0.504  Sum_probs=21.2

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      +.-.+|+|+|..|+|||||++.+.
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~La  150 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLA  150 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            446899999999999999998864

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.94  E-value=0.0012  Score=54.21  Aligned_cols=24  Identities=38%  Similarity=0.487  Sum_probs=21.2

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      ..-.||+|+|..|+|||||++.+.
T Consensus       155 ~~g~vi~lvG~nGsGKTTll~~La  178 (359)
T 2og2_A          155 RKPAVIMIVGVNGGGKTTSLGKLA  178 (359)
T ss_dssp             SSSEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHH
Confidence            346799999999999999999875

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=96.92  E-value=0.00079  Score=56.97  Aligned_cols=50  Identities=30%  Similarity=0.306  Sum_probs=36.8

Q ss_pred             CcceechhhHHHHHHHhhcC----C-C-CCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCE----S-S-EERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~----~-~-~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|.+..++.|.+++...    . . ......+-|-++|..|+|||+||+.+.+
T Consensus       134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~  189 (444)
T 2zan_A          134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVAT  189 (444)
T ss_dssp             GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHH
Confidence            46899999999998877310    0 0 0012346788999999999999999875

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.91  E-value=0.0013  Score=56.11  Aligned_cols=24  Identities=42%  Similarity=0.592  Sum_probs=21.2

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      ..-.||+|+|..|+|||||++.+.
T Consensus       291 ~~GeVI~LVGpNGSGKTTLl~~LA  314 (503)
T 2yhs_A          291 KAPFVILMVGVNGVGKTTTIGKLA  314 (503)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHH
T ss_pred             cCCeEEEEECCCcccHHHHHHHHH
Confidence            346799999999999999999875

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.89  E-value=0.00062  Score=54.66  Aligned_cols=23  Identities=35%  Similarity=0.488  Sum_probs=20.5

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHh
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      +-.+|+|+|.+|+|||||++.+.
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~La  123 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLG  123 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHH
Confidence            35799999999999999999875

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.86  E-value=0.0015  Score=52.49  Aligned_cols=24  Identities=38%  Similarity=0.487  Sum_probs=21.0

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      ....+|.|+|.+|+||||++..+.
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA  125 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLA  125 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHH
Confidence            446899999999999999998764

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=96.85  E-value=0.0014  Score=53.74  Aligned_cols=36  Identities=28%  Similarity=0.424  Sum_probs=26.5

Q ss_pred             HHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          186 KNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       186 ~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      ...+++.|....    .+..+|+|+|.+|+|||||+..+.
T Consensus        65 ~~~~~~~~~~~~----~~~~~I~i~G~~G~GKSTl~~~L~  100 (355)
T 3p32_A           65 AQQLLLRLLPDS----GNAHRVGITGVPGVGKSTAIEALG  100 (355)
T ss_dssp             HHHHHHHHGGGC----CCSEEEEEECCTTSSHHHHHHHHH
T ss_pred             HHHHHHHhHhhc----CCceEEEEECCCCCCHHHHHHHHH
Confidence            444555554332    457899999999999999998763

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=96.83  E-value=0.00073  Score=54.65  Aligned_cols=41  Identities=22%  Similarity=0.226  Sum_probs=34.0

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .++|.+..++.+...+..+.        -+-++|..|+|||+||+.+.+
T Consensus        28 ~i~g~~~~~~~l~~~l~~~~--------~vll~G~pGtGKT~la~~la~   68 (331)
T 2r44_A           28 VVVGQKYMINRLLIGICTGG--------HILLEGVPGLAKTLSVNTLAK   68 (331)
T ss_dssp             TCCSCHHHHHHHHHHHHHTC--------CEEEESCCCHHHHHHHHHHHH
T ss_pred             ceeCcHHHHHHHHHHHHcCC--------eEEEECCCCCcHHHHHHHHHH
Confidence            57899999998888886532        467899999999999998764

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.82  E-value=0.0018  Score=52.37  Aligned_cols=24  Identities=38%  Similarity=0.397  Sum_probs=20.9

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      ....+|+|+|.+|+||||++..+.
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA  126 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMA  126 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            456899999999999999998763

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.81  E-value=0.00093  Score=52.72  Aligned_cols=49  Identities=31%  Similarity=0.374  Sum_probs=32.2

Q ss_pred             CcceechhhHHHHHHHhhcCCCC-------CCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESSE-------ERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|.+..+.++.++...-...       -..... +.|+|..|+|||||++.+.+
T Consensus        40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~   95 (278)
T 1iy2_A           40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAG   95 (278)
T ss_dssp             GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHH
T ss_pred             HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHH
Confidence            46889887777665543211000       001123 88999999999999999875

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=96.80  E-value=0.0015  Score=55.43  Aligned_cols=46  Identities=26%  Similarity=0.294  Sum_probs=33.5

Q ss_pred             CcceechhhHHHHHHHh---hcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRL---LCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L---~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|.+..++.+..++   ..+.    ...+-+-++|.+|+|||+||+.+.+
T Consensus        37 ~~iiG~~~~~~~l~~~~~~~~~~~----~~~~~iLl~GppGtGKT~la~ala~   85 (456)
T 2c9o_A           37 SGLVGQENAREACGVIVELIKSKK----MAGRAVLLAGPPGTGKTALALAIAQ   85 (456)
T ss_dssp             TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHHHhCC----CCCCeEEEECCCcCCHHHHHHHHHH
Confidence            56999999888655544   3332    2234577999999999999998764

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=96.79  E-value=0.0018  Score=54.60  Aligned_cols=41  Identities=29%  Similarity=0.371  Sum_probs=28.2

Q ss_pred             hHHHHHHHhhcCCCC---CCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          185 EKNELVNRLLCESSE---ERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       185 ~~~~l~~~L~~~~~~---~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      -.++|.++|.....+   ...+.++|.|+|.+|+||||++-.+-
T Consensus        78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA  121 (433)
T 2xxa_A           78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLG  121 (433)
T ss_dssp             HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHH
T ss_pred             HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHH
Confidence            355666666543211   12457899999999999999987653

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.79  E-value=0.00088  Score=53.71  Aligned_cols=23  Identities=39%  Similarity=0.469  Sum_probs=20.5

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHh
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .-.+++|+|..|+|||||++.+.
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~La  121 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLA  121 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHH
Confidence            35799999999999999999875

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.75  E-value=0.00097  Score=52.86  Aligned_cols=24  Identities=33%  Similarity=0.562  Sum_probs=21.0

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      ....+|+|.|+.|+||||+|+.+-
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            446899999999999999999863

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.75  E-value=0.00077  Score=52.93  Aligned_cols=22  Identities=23%  Similarity=0.449  Sum_probs=20.0

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||++.+..
T Consensus        51 ei~~liG~NGsGKSTLlk~l~G   72 (263)
T 2olj_A           51 EVVVVIGPSGSGKSTFLRCLNL   72 (263)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEEcCCCCcHHHHHHHHHc
Confidence            6999999999999999998753

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=96.75  E-value=0.00067  Score=51.58  Aligned_cols=22  Identities=36%  Similarity=0.566  Sum_probs=20.0

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||.+.+..
T Consensus        36 e~~~iiG~NGsGKSTLlk~l~G   57 (214)
T 1sgw_A           36 NVVNFHGPNGIGKTTLLKTIST   57 (214)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            5899999999999999998863

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.73  E-value=0.00089  Score=53.53  Aligned_cols=23  Identities=35%  Similarity=0.341  Sum_probs=20.1

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHh
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .-.+|+|+|.+|+||||++..+.
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA  126 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLA  126 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            35799999999999999998763

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.72  E-value=0.00088  Score=52.73  Aligned_cols=22  Identities=27%  Similarity=0.451  Sum_probs=20.3

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||++.+..
T Consensus        47 e~~~l~G~NGsGKSTLlk~l~G   68 (267)
T 2zu0_C           47 EVHAIMGPNGSGKSTLSATLAG   68 (267)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            5999999999999999999864

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=96.72  E-value=0.001  Score=53.67  Aligned_cols=23  Identities=35%  Similarity=0.689  Sum_probs=19.3

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHH
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      .+.+||+|.|=|||||||.+-.+
T Consensus        46 ~~aKVIAIaGKGGVGKTTtavNL   68 (314)
T 3fwy_A           46 TGAKVFAVYGKGGIGKSTTSSNL   68 (314)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHH
T ss_pred             CCceEEEEECCCccCHHHHHHHH
Confidence            45799999999999999987643

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.71  E-value=0.00087  Score=52.42  Aligned_cols=22  Identities=36%  Similarity=0.545  Sum_probs=20.1

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||.+.+..
T Consensus        42 ei~~l~G~NGsGKSTLlk~l~G   63 (256)
T 1vpl_A           42 EIFGLIGPNGAGKTTTLRIIST   63 (256)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTT
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            5999999999999999998863

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.70  E-value=0.0009  Score=52.04  Aligned_cols=22  Identities=36%  Similarity=0.665  Sum_probs=20.0

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||++.+..
T Consensus        36 e~~~i~G~nGsGKSTLl~~l~G   57 (247)
T 2ff7_A           36 EVIGIVGRSGSGKSTLTKLIQR   57 (247)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            5999999999999999998753

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=96.70  E-value=0.0016  Score=55.93  Aligned_cols=41  Identities=20%  Similarity=0.203  Sum_probs=34.0

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .++|.+..++.+...+..+.        -|-++|.+|+|||+||+.+.+
T Consensus        23 ~ivGq~~~i~~l~~al~~~~--------~VLL~GpPGtGKT~LAraLa~   63 (500)
T 3nbx_X           23 GLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKF   63 (500)
T ss_dssp             TCSSCHHHHHHHHHHHHHTC--------EEEEECCSSSSHHHHHHHGGG
T ss_pred             hhHHHHHHHHHHHHHHhcCC--------eeEeecCchHHHHHHHHHHHH
Confidence            47899988888888776543        567999999999999999865

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.69  E-value=0.0009  Score=52.64  Aligned_cols=21  Identities=29%  Similarity=0.642  Sum_probs=19.6

Q ss_pred             EEEEEecCCCCcHHHHHHHHh
Q 037814          205 RIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+++|+|..|+|||||++.+.
T Consensus        38 e~~~liG~nGsGKSTLl~~l~   58 (266)
T 4g1u_C           38 EMVAIIGPNGAGKSTLLRLLT   58 (266)
T ss_dssp             CEEEEECCTTSCHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHh
Confidence            699999999999999999875

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.69  E-value=0.00091  Score=52.76  Aligned_cols=22  Identities=41%  Similarity=0.664  Sum_probs=20.1

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||++.+..
T Consensus        46 e~~~i~G~nGsGKSTLlk~l~G   67 (271)
T 2ixe_A           46 KVTALVGPNGSGKSTVAALLQN   67 (271)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            6999999999999999998863

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.67  E-value=0.00078  Score=52.50  Aligned_cols=21  Identities=48%  Similarity=0.632  Sum_probs=19.3

Q ss_pred             EEEEEecCCCCcHHHHHHHHh
Q 037814          205 RIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+|.|+|+.|+|||||++.+-
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La   69 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMA   69 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            589999999999999999874

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.67  E-value=0.00098  Score=52.25  Aligned_cols=22  Identities=41%  Similarity=0.682  Sum_probs=20.0

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||++.+..
T Consensus        47 e~~~i~G~nGsGKSTLl~~l~G   68 (260)
T 2ghi_A           47 TTCALVGHTGSGKSTIAKLLYR   68 (260)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            5999999999999999998753

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.66  E-value=0.00098  Score=52.80  Aligned_cols=22  Identities=36%  Similarity=0.439  Sum_probs=20.0

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||.+.+..
T Consensus        48 e~~~liG~NGsGKSTLlk~l~G   69 (279)
T 2ihy_A           48 DKWILYGLNGAGKTTLLNILNA   69 (279)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCcHHHHHHHHhC
Confidence            5899999999999999998863

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=96.65  E-value=0.0015  Score=55.99  Aligned_cols=51  Identities=29%  Similarity=0.292  Sum_probs=36.6

Q ss_pred             CcceechhhHHHHHHHhhcCCCC-------CCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          177 SEIFGREKEKNELVNRLLCESSE-------ERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .+++|.+..+++|.+++...-..       ......-|-|+|..|+|||+||+.+.+.
T Consensus       204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~  261 (489)
T 3hu3_A          204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE  261 (489)
T ss_dssp             GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH
Confidence            35899999999998887532000       0022345779999999999999998753

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.64  E-value=0.0013  Score=52.74  Aligned_cols=25  Identities=36%  Similarity=0.480  Sum_probs=21.5

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ..-.+|+|+|..|+|||||++.+..
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3357999999999999999998753

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.63  E-value=0.0011  Score=57.46  Aligned_cols=49  Identities=31%  Similarity=0.386  Sum_probs=34.4

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +++|.++-+..+.+.+.-..-...-.-.++.++|..|+||||||+.+.+
T Consensus        82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~  130 (543)
T 3m6a_A           82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK  130 (543)
T ss_dssp             HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            5789888888776554321100012356899999999999999999864

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.62  E-value=0.0013  Score=52.34  Aligned_cols=25  Identities=28%  Similarity=0.489  Sum_probs=21.3

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +....+-++|.+|+|||+||+.|.+
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3456788999999999999999875

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.57  E-value=0.0033  Score=52.90  Aligned_cols=23  Identities=39%  Similarity=0.534  Sum_probs=20.1

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHh
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      +..||.|+|.+|+||||++..+-
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA  121 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLA  121 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHH
Confidence            47899999999999999987653

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.55  E-value=0.0017  Score=54.63  Aligned_cols=40  Identities=40%  Similarity=0.397  Sum_probs=26.8

Q ss_pred             HHHHHHHhhcCCCC---CCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          186 KNELVNRLLCESSE---ERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       186 ~~~l~~~L~~~~~~---~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+.|.++|.....+   ...+..+|.|+|.+|+||||++..+-
T Consensus        78 ~~~l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La  120 (432)
T 2v3c_C           78 YEELVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLA  120 (432)
T ss_dssp             HHHHHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHH
T ss_pred             HHHHHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHH
Confidence            45566666433110   11335799999999999999988753

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=96.54  E-value=0.0022  Score=52.79  Aligned_cols=49  Identities=29%  Similarity=0.289  Sum_probs=33.7

Q ss_pred             cceechhhHHHHHHHhhc----CC--------------------CCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLC----ES--------------------SEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~----~~--------------------~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .++|.+..++.|...+..    ..                    .........+-++|..|+||||||+.+.+
T Consensus        22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~   94 (376)
T 1um8_A           22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK   94 (376)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence            478988888888776620    00                    00012234677999999999999999864

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=96.53  E-value=0.0031  Score=54.08  Aligned_cols=40  Identities=28%  Similarity=0.272  Sum_probs=26.1

Q ss_pred             HHHHHHHhhcCCCC---CCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          186 KNELVNRLLCESSE---ERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       186 ~~~l~~~L~~~~~~---~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .++|.++|......   ...+..+|+|+|.+|+|||||+..+-
T Consensus        80 ~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA  122 (504)
T 2j37_W           80 FKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLA  122 (504)
T ss_dssp             HHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHH
T ss_pred             HHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHH
Confidence            44555655432211   11457899999999999999998764

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.47  E-value=0.0037  Score=52.57  Aligned_cols=23  Identities=52%  Similarity=0.496  Sum_probs=20.3

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHh
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      ...||.++|.+|+||||++..+-
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA  118 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLA  118 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            47899999999999999988763

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.45  E-value=0.0033  Score=53.08  Aligned_cols=23  Identities=35%  Similarity=0.280  Sum_probs=20.9

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ..-+-|+|..|+||||||+.+.+
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~  152 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGN  152 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            56789999999999999999875

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.44  E-value=0.0033  Score=53.58  Aligned_cols=50  Identities=30%  Similarity=0.315  Sum_probs=33.4

Q ss_pred             CcceechhhHHHHHHHhhcCCCC------CCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESSE------ERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~------~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|.+..+++|.+++..-..+      ...-.+-|-|+|..|+||||||+.|.+
T Consensus        16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~   71 (476)
T 2ce7_A           16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAG   71 (476)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHH
T ss_pred             HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence            46899998888777654321000      001112367999999999999999875

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.44  E-value=0.0032  Score=52.83  Aligned_cols=50  Identities=26%  Similarity=0.344  Sum_probs=36.0

Q ss_pred             CcceechhhHHHHHHHhhcC--CCC-----CCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCE--SSE-----ERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~--~~~-----~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .++.|.+..++.|.+.+...  .++     .-+..+=|-++|.+|+|||+||+.|-+
T Consensus       172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~  228 (428)
T 4b4t_K          172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN  228 (428)
T ss_dssp             GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence            46899999999888765321  000     113345677999999999999999865

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=96.42  E-value=0.0015  Score=53.02  Aligned_cols=44  Identities=25%  Similarity=0.222  Sum_probs=31.6

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|.+..+..+...+.....      .-|-|+|..|+|||+||+.+.+
T Consensus        24 ~~i~G~~~~~~~l~~~~~~~~~------~~vLl~G~~GtGKT~la~~la~   67 (350)
T 1g8p_A           24 SAIVGQEDMKLALLLTAVDPGI------GGVLVFGDRGTGKSTAVRALAA   67 (350)
T ss_dssp             GGSCSCHHHHHHHHHHHHCGGG------CCEEEECCGGGCTTHHHHHHHH
T ss_pred             hhccChHHHHHHHHHHhhCCCC------ceEEEECCCCccHHHHHHHHHH
Confidence            3589998866665444443221      2278999999999999999875

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.40  E-value=0.0017  Score=51.72  Aligned_cols=22  Identities=27%  Similarity=0.555  Sum_probs=20.0

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||.+.+..
T Consensus        65 e~~~i~G~NGsGKSTLlk~l~G   86 (290)
T 2bbs_A           65 QLLAVAGSTGAGKTSLLMMIMG   86 (290)
T ss_dssp             CEEEEEESTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCcHHHHHHHHhc
Confidence            5999999999999999998753

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.40  E-value=0.0013  Score=52.70  Aligned_cols=23  Identities=30%  Similarity=0.639  Sum_probs=20.4

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      =.+++|+|..|+|||||++.+..
T Consensus        80 Ge~vaivG~sGsGKSTLl~ll~g  102 (306)
T 3nh6_A           80 GQTLALVGPSGAGKSTILRLLFR  102 (306)
T ss_dssp             TCEEEEESSSCHHHHHHHHHHTT
T ss_pred             CCEEEEECCCCchHHHHHHHHHc
Confidence            36999999999999999998753

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.37  E-value=0.002  Score=51.67  Aligned_cols=22  Identities=18%  Similarity=0.323  Sum_probs=20.0

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      =.+++|+|..|.|||||++.+.
T Consensus       126 Ge~vaIvGpsGsGKSTLl~lL~  147 (305)
T 2v9p_A          126 KNCLAFIGPPNTGKSMLCNSLI  147 (305)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHh
Confidence            4699999999999999999875

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.37  E-value=0.0044  Score=52.13  Aligned_cols=50  Identities=30%  Similarity=0.283  Sum_probs=36.0

Q ss_pred             CcceechhhHHHHHHHhhcC--CCC-----CCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCE--SSE-----ERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~--~~~-----~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .++.|.+..++.|.+.+...  .++     .-+..+=|-++|.+|+|||+||+.|.+
T Consensus       181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~  237 (437)
T 4b4t_L          181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA  237 (437)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence            46889999998887765321  000     113356778999999999999999865

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.33  E-value=0.0034  Score=52.74  Aligned_cols=50  Identities=28%  Similarity=0.367  Sum_probs=36.1

Q ss_pred             CcceechhhHHHHHHHhhc----CC---CCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLC----ES---SEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~----~~---~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .++.|.+..++.|.+.+..    .+   .-.-+..+=|-++|.+|+|||+||+.|.+
T Consensus       181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~  237 (434)
T 4b4t_M          181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAA  237 (434)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHH
Confidence            4689999999998876432    11   00113356778999999999999999865

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.33  E-value=0.0023  Score=53.63  Aligned_cols=26  Identities=31%  Similarity=0.505  Sum_probs=22.4

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ....+|.|+|+.|+||||+|+.+..+
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            44689999999999999999998653

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=96.31  E-value=0.0024  Score=50.98  Aligned_cols=22  Identities=41%  Similarity=0.413  Sum_probs=19.7

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      -.+|+|+|.+|+||||++..+.
T Consensus        98 ~~~i~i~g~~G~GKTT~~~~la  119 (295)
T 1ls1_A           98 RNLWFLVGLQGSGKTTTAAKLA  119 (295)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4799999999999999998864

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=96.31  E-value=0.0023  Score=53.49  Aligned_cols=24  Identities=17%  Similarity=0.249  Sum_probs=21.6

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHhc
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ...+++|+|..|+|||||.+.+..
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~G   91 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRG   91 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhC
Confidence            357999999999999999999875

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.30  E-value=0.0023  Score=52.61  Aligned_cols=21  Identities=33%  Similarity=0.613  Sum_probs=19.6

Q ss_pred             EEEEEecCCCCcHHHHHHHHh
Q 037814          205 RIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+++|+|..|+|||||++.+.
T Consensus        55 ei~~IiGpnGaGKSTLlr~i~   75 (366)
T 3tui_C           55 QIYGVIGASGAGKSTLIRCVN   75 (366)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEEcCCCchHHHHHHHHh
Confidence            699999999999999999875

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=96.29  E-value=0.0039  Score=49.80  Aligned_cols=22  Identities=50%  Similarity=0.611  Sum_probs=19.8

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      ..+|+|+|.+|+||||++..+.
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la  119 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLA  119 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            6899999999999999998764

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.29  E-value=0.0025  Score=49.45  Aligned_cols=22  Identities=36%  Similarity=0.368  Sum_probs=19.2

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .-|-|+|..|+||||||+.+.+
T Consensus        40 ~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           40 KGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4466999999999999999875

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.26  E-value=0.0035  Score=52.12  Aligned_cols=50  Identities=26%  Similarity=0.264  Sum_probs=35.4

Q ss_pred             CcceechhhHHHHHHHhhcC--CCC-----CCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCE--SSE-----ERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~--~~~-----~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .++.|.+..++.|.+.+.-.  .++     .-+..+=|-++|.+|+|||.||+.|-+
T Consensus       148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~  204 (405)
T 4b4t_J          148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAH  204 (405)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH
Confidence            46889999999887765320  000     113345677999999999999999865

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=96.25  E-value=0.0033  Score=55.27  Aligned_cols=41  Identities=24%  Similarity=0.361  Sum_probs=33.9

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .++|.+.-++.|...+..+        ..+.|+|..|+||||||+.+..
T Consensus        42 ~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~   82 (604)
T 3k1j_A           42 QVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAE   82 (604)
T ss_dssp             HCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHH
T ss_pred             eEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhc
Confidence            5889888888777776543        4789999999999999999864

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.23  E-value=0.0036  Score=53.65  Aligned_cols=49  Identities=33%  Similarity=0.388  Sum_probs=33.1

Q ss_pred             CcceechhhHHHHHHHhh---cCCC----CCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLL---CESS----EERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~---~~~~----~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|.+..+..|.++..   ....    .-..... |.|+|..|+||||||+.|.+
T Consensus        31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~G-vLL~GppGtGKTtLaraIa~   86 (499)
T 2dhr_A           31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAG   86 (499)
T ss_dssp             TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSE-EEEECSSSSSHHHHHHHHHH
T ss_pred             HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCce-EEEECCCCCCHHHHHHHHHH
Confidence            468999888777766542   2110    0001122 88999999999999999875

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=96.21  E-value=0.0058  Score=49.68  Aligned_cols=24  Identities=21%  Similarity=0.295  Sum_probs=21.3

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+-.+++|+|..|+|||||.+.+.
T Consensus        53 ~~g~~v~i~G~~GaGKSTLl~~l~   76 (337)
T 2qm8_A           53 GRAIRVGITGVPGVGKSTTIDALG   76 (337)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            346899999999999999999875

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.19  E-value=0.0028  Score=51.91  Aligned_cols=21  Identities=33%  Similarity=0.612  Sum_probs=19.6

Q ss_pred             EEEEEecCCCCcHHHHHHHHh
Q 037814          205 RIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+++|+|..|+|||||.+.+.
T Consensus        42 e~~~llGpnGsGKSTLLr~ia   62 (355)
T 1z47_A           42 EMVGLLGPSGSGKTTILRLIA   62 (355)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHh
Confidence            599999999999999999875

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.19  E-value=0.0045  Score=49.68  Aligned_cols=41  Identities=20%  Similarity=0.134  Sum_probs=28.4

Q ss_pred             hhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          183 EKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       183 ~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ......+.+++.....   ..-.-+-|+|..|+|||+||+.+.+
T Consensus       134 ~~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~  174 (308)
T 2qgz_A          134 MEAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAH  174 (308)
T ss_dssp             HHHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHH
Confidence            3344556667654321   1235678999999999999999875

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.17  E-value=0.0055  Score=51.74  Aligned_cols=50  Identities=26%  Similarity=0.236  Sum_probs=35.5

Q ss_pred             CcceechhhHHHHHHHhhc----CC---CCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLC----ES---SEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~----~~---~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+|.|.++.++.|.+.+.-    .+   .-.-+..+=|-++|.+|+|||+||+.|-+
T Consensus       209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~  265 (467)
T 4b4t_H          209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN  265 (467)
T ss_dssp             SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh
Confidence            4688999999988876422    00   00113356677999999999999999865

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.16  E-value=0.0046  Score=49.46  Aligned_cols=32  Identities=31%  Similarity=0.361  Sum_probs=26.1

Q ss_pred             hHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          185 EKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       185 ~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+++|.+++.+         .+++|+|..|+|||||.+.+.
T Consensus       155 gi~~L~~~l~G---------~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          155 GIDELVDYLEG---------FICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             THHHHHHHTTT---------CEEEEECSTTSSHHHHHHHHH
T ss_pred             CHHHHHhhccC---------cEEEEECCCCCCHHHHHHHHH
Confidence            36677776642         489999999999999999986

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=96.16  E-value=0.0035  Score=51.24  Aligned_cols=23  Identities=26%  Similarity=0.301  Sum_probs=20.9

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHh
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      +..+|+|+|.+|+|||||...+.
T Consensus        73 ~~~~v~lvG~pgaGKSTLln~L~   95 (349)
T 2www_A           73 LAFRVGLSGPPGAGKSTFIEYFG   95 (349)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHH
Confidence            36899999999999999999875

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.14  E-value=0.003  Score=50.24  Aligned_cols=22  Identities=23%  Similarity=0.382  Sum_probs=19.7

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      =.+++|+|..|+|||||++.+.
T Consensus        35 G~~~~i~G~~G~GKTTl~~~ia   56 (296)
T 1cr0_A           35 GEVIMVTSGSGMGKSTFVRQQA   56 (296)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHH
Confidence            3699999999999999999864

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=96.13  E-value=0.0065  Score=49.44  Aligned_cols=24  Identities=21%  Similarity=0.247  Sum_probs=21.1

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+..+|+|+|.+|+|||||+..+.
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~   77 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFG   77 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHH
Confidence            446899999999999999998873

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.09  E-value=0.0086  Score=54.18  Aligned_cols=51  Identities=29%  Similarity=0.272  Sum_probs=36.7

Q ss_pred             CcceechhhHHHHHHHhhc----CCCC---CCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          177 SEIFGREKEKNELVNRLLC----ESSE---ERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~----~~~~---~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .++.|.+..+++|.+++.-    .+--   .-...+=|-++|.+|+|||+||+.|.+.
T Consensus       204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e  261 (806)
T 3cf2_A          204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE  261 (806)
T ss_dssp             GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred             hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3678999999888876531    1100   1133566889999999999999999865

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.07  E-value=0.0054  Score=50.64  Aligned_cols=24  Identities=33%  Similarity=0.211  Sum_probs=21.0

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHhc
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .-.+++|+|..|+|||||++.+..
T Consensus       168 ~~~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          168 KKRYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHh
Confidence            356999999999999999998753

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.07  E-value=0.0034  Score=51.56  Aligned_cols=22  Identities=18%  Similarity=0.327  Sum_probs=19.9

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      -..++|+|..|+|||||++.+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~  191 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLA  191 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHH
Confidence            4789999999999999999874

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=96.05  E-value=0.0096  Score=50.17  Aligned_cols=48  Identities=19%  Similarity=0.284  Sum_probs=33.6

Q ss_pred             eechhhHHHHHHHhhcCC-C--C--CCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          180 FGREKEKNELVNRLLCES-S--E--ERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       180 vG~~~~~~~l~~~L~~~~-~--~--~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .|.++-.+.|.+.|.... .  .  ......-|+|+|.+|+|||||.+.+...
T Consensus       151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~  203 (439)
T 1mky_A          151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNK  203 (439)
T ss_dssp             BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCC
Confidence            456666777777665322 1  0  1234678999999999999999998754

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.04  E-value=0.0036  Score=51.59  Aligned_cols=21  Identities=33%  Similarity=0.501  Sum_probs=19.7

Q ss_pred             EEEEEecCCCCcHHHHHHHHh
Q 037814          205 RIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+++|+|..|+|||||.+.+.
T Consensus        38 e~~~llGpnGsGKSTLLr~ia   58 (372)
T 1v43_A           38 EFLVLLGPSGCGKTTTLRMIA   58 (372)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHH
Confidence            699999999999999999875

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=96.02  E-value=0.0082  Score=47.03  Aligned_cols=26  Identities=23%  Similarity=0.434  Sum_probs=22.0

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHhcCC
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAYNND  228 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy~d~  228 (229)
                      ....|.|+|..|+|||||...+++..
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            34678899999999999999987653

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=96.00  E-value=0.0077  Score=50.75  Aligned_cols=50  Identities=24%  Similarity=0.365  Sum_probs=34.1

Q ss_pred             CcceechhhHHHHHHHhhcC--------CCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCE--------SSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~--------~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ..++|.+..++.|...+...        ........+-|-++|..|+||||||+.+-+
T Consensus        15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~   72 (444)
T 1g41_A           15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK   72 (444)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence            35899988888887666321        000001234588999999999999998753

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.00  E-value=0.0054  Score=49.72  Aligned_cols=23  Identities=26%  Similarity=0.426  Sum_probs=20.6

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      -++|.|+|+.|+|||||+..+-.
T Consensus        40 ~~lIvI~GPTgsGKTtLa~~LA~   62 (339)
T 3a8t_A           40 EKLLVLMGATGTGKSRLSIDLAA   62 (339)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            46999999999999999998764

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=95.96  E-value=0.0037  Score=51.10  Aligned_cols=22  Identities=32%  Similarity=0.504  Sum_probs=20.3

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||.+.+.+
T Consensus        72 q~~gIiG~nGaGKTTLl~~I~g   93 (347)
T 2obl_A           72 QRIGIFAGSGVGKSTLLGMICN   93 (347)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            6999999999999999998865

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=95.94  E-value=0.0051  Score=46.50  Aligned_cols=23  Identities=35%  Similarity=0.479  Sum_probs=20.1

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ..-|.|+|.+|+|||||...+..
T Consensus        37 ~~kVvlvG~~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           37 YYRVVLIGEQGVGKSTLANIFAG   59 (211)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            46689999999999999998763

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.92  E-value=0.0046  Score=50.55  Aligned_cols=24  Identities=33%  Similarity=0.325  Sum_probs=21.2

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      +.=.++.|+|..|+|||||+..+.
T Consensus       129 ~~G~i~~I~G~~GsGKTTL~~~l~  152 (349)
T 1pzn_A          129 ETQAITEVFGEFGSGKTQLAHTLA  152 (349)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            345899999999999999999875

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=95.92  E-value=0.0097  Score=46.40  Aligned_cols=25  Identities=20%  Similarity=0.448  Sum_probs=21.5

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      +...|+|+|..|+|||||...+...
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~   59 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGE   59 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            3467899999999999999998764

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.91  E-value=0.0071  Score=45.49  Aligned_cols=36  Identities=14%  Similarity=0.106  Sum_probs=26.2

Q ss_pred             HHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          186 KNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       186 ~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ...|..|+.+ -    ++-.-+-|+|.+|+||||+|..+.+
T Consensus        45 ~~~l~~~~~~-i----Pkkn~ili~GPPGtGKTt~a~ala~   80 (212)
T 1tue_A           45 LGALKSFLKG-T----PKKNCLVFCGPANTGKSYFGMSFIH   80 (212)
T ss_dssp             HHHHHHHHHT-C----TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             HHHHHHHHhc-C----CcccEEEEECCCCCCHHHHHHHHHH
Confidence            5666666653 2    3345689999999999999876653

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=95.90  E-value=0.0051  Score=49.59  Aligned_cols=23  Identities=26%  Similarity=0.385  Sum_probs=19.9

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      -+++-|+|++|+||||||.++..
T Consensus       123 gsviLI~GpPGsGKTtLAlqlA~  145 (331)
T 2vhj_A          123 SGMVIVTGKGNSGKTPLVHALGE  145 (331)
T ss_dssp             SEEEEEECSCSSSHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            46778999999999999998753

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=95.90  E-value=0.0082  Score=47.97  Aligned_cols=33  Identities=27%  Similarity=0.431  Sum_probs=26.6

Q ss_pred             hHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          185 EKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       185 ~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .++++..++..         .+++|+|..|+|||||.+.+..
T Consensus       159 gv~~lf~~l~g---------eiv~l~G~sG~GKSTll~~l~g  191 (301)
T 1u0l_A          159 GIEELKEYLKG---------KISTMAGLSGVGKSSLLNAINP  191 (301)
T ss_dssp             THHHHHHHHSS---------SEEEEECSTTSSHHHHHHHHST
T ss_pred             CHHHHHHHhcC---------CeEEEECCCCCcHHHHHHHhcc
Confidence            46677777642         4899999999999999998864

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=95.90  E-value=0.0063  Score=54.91  Aligned_cols=50  Identities=18%  Similarity=0.308  Sum_probs=37.1

Q ss_pred             CcceechhhHHHHHHHhhcCC---CCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCES---SEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~---~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ..++|.+..++.|...+....   ......+..+-++|..|+|||+||+.+.+
T Consensus       491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~  543 (758)
T 3pxi_A          491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE  543 (758)
T ss_dssp             TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHH
T ss_pred             CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence            358999999988887775322   11123455799999999999999998864

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=95.89  E-value=0.0097  Score=49.83  Aligned_cols=23  Identities=30%  Similarity=0.320  Sum_probs=20.3

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      -.+|+|+|..|+|||||.+.+..
T Consensus       167 ggii~I~GpnGSGKTTlL~allg  189 (418)
T 1p9r_A          167 HGIILVTGPTGSGKSTTLYAGLQ  189 (418)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHh
Confidence            37999999999999999998753

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=95.86  E-value=0.0041  Score=52.09  Aligned_cols=20  Identities=45%  Similarity=0.670  Sum_probs=18.8

Q ss_pred             EEEecCCCCcHHHHHHHHhc
Q 037814          207 ISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       207 i~IvG~gGvGKTTLa~~vy~  226 (229)
                      ++|+|..|+|||||.+.++.
T Consensus        45 vaLvG~nGaGKSTLln~L~G   64 (427)
T 2qag_B           45 ILCVGETGLGKSTLMDTLFN   64 (427)
T ss_dssp             EEEECSTTSSSHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            99999999999999999874

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.84  E-value=0.0047  Score=53.49  Aligned_cols=22  Identities=41%  Similarity=0.702  Sum_probs=20.3

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||++.++.
T Consensus       313 e~~~i~G~NGsGKSTLlk~l~G  334 (538)
T 1yqt_A          313 EVIGIVGPNGIGKTTFVKMLAG  334 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            5899999999999999999874

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=95.83  E-value=0.0083  Score=49.17  Aligned_cols=21  Identities=24%  Similarity=0.328  Sum_probs=19.4

Q ss_pred             EEEEEecCCCCcHHHHHHHHh
Q 037814          205 RIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+++|+|..|+|||||.+.+.
T Consensus       124 g~i~I~GptGSGKTTlL~~l~  144 (356)
T 3jvv_A          124 GLVLVTGPTGSGKSTTLAAML  144 (356)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            599999999999999999874

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=95.79  E-value=0.0042  Score=51.02  Aligned_cols=22  Identities=41%  Similarity=0.570  Sum_probs=20.1

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||++.+..
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~  197 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQ  197 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            5899999999999999999864

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=95.79  E-value=0.0055  Score=50.56  Aligned_cols=22  Identities=27%  Similarity=0.279  Sum_probs=20.0

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      -.+++|+|..|+|||||++.+.
T Consensus       136 g~~i~ivG~~GsGKTTll~~l~  157 (372)
T 2ewv_A          136 MGLILVTGPTGSGKSTTIASMI  157 (372)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            4799999999999999999875

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=95.79  E-value=0.004  Score=52.84  Aligned_cols=22  Identities=27%  Similarity=0.369  Sum_probs=20.1

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||++.+..
T Consensus       139 e~v~IvGpnGsGKSTLlr~L~G  160 (460)
T 2npi_A          139 PRVVIVGGSQTGKTSLSRTLCS  160 (460)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            5899999999999999999864

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=95.77  E-value=0.0052  Score=50.96  Aligned_cols=21  Identities=33%  Similarity=0.464  Sum_probs=19.6

Q ss_pred             EEEEEecCCCCcHHHHHHHHh
Q 037814          205 RIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+++|+|..|+|||||.+.+.
T Consensus        48 e~~~llGpsGsGKSTLLr~ia   68 (390)
T 3gd7_A           48 QRVGLLGRTGSGKSTLLSAFL   68 (390)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHh
Confidence            699999999999999999875

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=95.77  E-value=0.0058  Score=50.26  Aligned_cols=26  Identities=27%  Similarity=0.234  Sum_probs=21.6

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .++.+|+|+|..|+|||||.+.+.+.
T Consensus       177 ~~~~~V~lvG~~naGKSTLln~L~~~  202 (364)
T 2qtf_A          177 NNIPSIGIVGYTNSGKTSLFNSLTGL  202 (364)
T ss_dssp             --CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHCC
Confidence            35778999999999999999988754

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.76  E-value=0.0051  Score=53.26  Aligned_cols=22  Identities=45%  Similarity=0.733  Sum_probs=20.1

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||++.++.
T Consensus       295 ei~~i~G~nGsGKSTLl~~l~G  316 (538)
T 3ozx_A          295 EIIGILGPNGIGKTTFARILVG  316 (538)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            5899999999999999999864

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=95.76  E-value=0.0063  Score=51.03  Aligned_cols=22  Identities=41%  Similarity=0.413  Sum_probs=19.6

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      ..+|.|+|.+|+||||++..+.
T Consensus        98 ~~vi~i~G~~GsGKTT~~~~LA  119 (425)
T 2ffh_A           98 RNLWFLVGLQGSGKTTTAAKLA  119 (425)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            5799999999999999998764

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=95.75  E-value=0.0057  Score=50.08  Aligned_cols=22  Identities=32%  Similarity=0.548  Sum_probs=19.9

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||++.+..
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g  237 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLG  237 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHC
T ss_pred             CEEEEECCCCccHHHHHHHHhc
Confidence            4899999999999999998864

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.71  E-value=0.0057  Score=52.98  Aligned_cols=22  Identities=27%  Similarity=0.514  Sum_probs=20.2

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||++.+.-
T Consensus        48 e~~~LvG~NGaGKSTLlk~l~G   69 (538)
T 1yqt_A           48 MVVGIVGPNGTGKSTAVKILAG   69 (538)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            5999999999999999999864

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.67  E-value=0.0046  Score=53.64  Aligned_cols=23  Identities=30%  Similarity=0.410  Sum_probs=20.4

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      -.+|.|+|+.|+|||||++.+..
T Consensus       369 G~iI~LiG~sGSGKSTLar~La~  391 (552)
T 3cr8_A          369 GFTVFFTGLSGAGKSTLARALAA  391 (552)
T ss_dssp             CEEEEEEESSCHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCChHHHHHHHHHH
Confidence            37999999999999999998753

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=95.67  E-value=0.0049  Score=50.01  Aligned_cols=22  Identities=27%  Similarity=0.341  Sum_probs=19.9

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||++.+..
T Consensus       172 ~~v~i~G~~GsGKTTll~~l~g  193 (330)
T 2pt7_A          172 KNVIVCGGTGSGKTTYIKSIME  193 (330)
T ss_dssp             CCEEEEESTTSCHHHHHHHGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            5899999999999999998764

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.63  E-value=0.0063  Score=53.47  Aligned_cols=22  Identities=41%  Similarity=0.702  Sum_probs=20.2

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||++.+..
T Consensus       383 ei~~i~G~NGsGKSTLlk~l~G  404 (607)
T 3bk7_A          383 EVIGIVGPNGIGKTTFVKMLAG  404 (607)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            5899999999999999999864

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=95.60  E-value=0.0081  Score=51.80  Aligned_cols=22  Identities=32%  Similarity=0.531  Sum_probs=19.9

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      ..+|-++|+.|.||||+|+.+.
T Consensus        35 ~~lIvlvGlpGSGKSTia~~La   56 (520)
T 2axn_A           35 PTVIVMVGLPARGKTYISKKLT   56 (520)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            5799999999999999999873

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=95.53  E-value=0.0091  Score=48.87  Aligned_cols=25  Identities=20%  Similarity=0.271  Sum_probs=21.6

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      +...|+|+|..|+|||||...+...
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~  190 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTA  190 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3568999999999999999987654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=95.53  E-value=0.021  Score=48.01  Aligned_cols=48  Identities=13%  Similarity=0.188  Sum_probs=32.9

Q ss_pred             eechhhHHHHHHHhhcCCC-CCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          180 FGREKEKNELVNRLLCESS-EERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       180 vG~~~~~~~l~~~L~~~~~-~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .|.++-++.|.+.+..... ...+...-|+|+|.+|+|||||...+..+
T Consensus       150 ~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~  198 (436)
T 2hjg_A          150 LGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGE  198 (436)
T ss_dssp             BTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCC
Confidence            3556666666666643221 11245678999999999999999998764

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=95.53  E-value=0.0068  Score=49.76  Aligned_cols=23  Identities=30%  Similarity=0.486  Sum_probs=19.8

Q ss_pred             EEEEEecCCCCcHHHHHHHHhcC
Q 037814          205 RIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      --|+|+|..|+|||||+..++..
T Consensus        38 ~~I~vvG~~g~GKSTLln~L~~~   60 (361)
T 2qag_A           38 FTLMVVGESGLGKSTLINSLFLT   60 (361)
T ss_dssp             ECEEECCCTTSCHHHHHHHHTTC
T ss_pred             EEEEEEcCCCCCHHHHHHHHhCC
Confidence            34699999999999999998754

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.53  E-value=0.0072  Score=53.07  Aligned_cols=22  Identities=36%  Similarity=0.608  Sum_probs=19.9

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||++.+.-
T Consensus       379 Eiv~iiG~NGsGKSTLlk~l~G  400 (608)
T 3j16_B          379 EILVMMGENGTGKTTLIKLLAG  400 (608)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCcHHHHHHHHhc
Confidence            5799999999999999999863

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=95.52  E-value=0.0093  Score=53.78  Aligned_cols=49  Identities=22%  Similarity=0.328  Sum_probs=35.5

Q ss_pred             cceechhhHHHHHHHhhcCC---CCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLCES---SEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~---~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .++|.+..++.|...+....   .+.......+-++|..|+|||+||+.+.+
T Consensus       459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~  510 (758)
T 1r6b_X          459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSK  510 (758)
T ss_dssp             TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHH
Confidence            47898888888877664321   00113456789999999999999998754

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.46  E-value=0.017  Score=48.41  Aligned_cols=50  Identities=32%  Similarity=0.334  Sum_probs=35.6

Q ss_pred             CcceechhhHHHHHHHhhc----CC---CCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLC----ES---SEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~----~~---~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .++.|.++.++.|.+.+.-    .+   .-.-+..+=|-++|.+|.|||.||+.|-+
T Consensus       182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~  238 (437)
T 4b4t_I          182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN  238 (437)
T ss_dssp             GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH
T ss_pred             eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHH
Confidence            4688999999888776532    10   00113346688999999999999999865

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=95.42  E-value=0.0077  Score=50.79  Aligned_cols=22  Identities=23%  Similarity=0.385  Sum_probs=20.2

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||++.+.+
T Consensus       158 q~~~IvG~sGsGKSTLl~~Iag  179 (438)
T 2dpy_A          158 QRMGLFAGSGVGKSVLLGMMAR  179 (438)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            6999999999999999998864

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=95.41  E-value=0.014  Score=53.42  Aligned_cols=49  Identities=16%  Similarity=0.297  Sum_probs=36.4

Q ss_pred             cceechhhHHHHHHHhhcCC---CCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLCES---SEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~---~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .++|.+..++.|...+....   .+.......+-|+|..|+|||+||+.+.+
T Consensus       559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~  610 (854)
T 1qvr_A          559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAA  610 (854)
T ss_dssp             HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHH
Confidence            47899998888877775321   00113456889999999999999998864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.41  E-value=0.0081  Score=52.78  Aligned_cols=23  Identities=30%  Similarity=0.484  Sum_probs=20.5

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      =.+++|+|..|+|||||++.+.-
T Consensus       117 Ge~~~LiG~NGsGKSTLlkiL~G  139 (607)
T 3bk7_A          117 GMVVGIVGPNGTGKTTAVKILAG  139 (607)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCChHHHHHHHHhC
Confidence            36999999999999999998863

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.39  E-value=0.0086  Score=52.60  Aligned_cols=23  Identities=35%  Similarity=0.602  Sum_probs=20.4

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      =.+++|+|..|+|||||.+.+..
T Consensus       103 Gei~~LvGpNGaGKSTLLkiL~G  125 (608)
T 3j16_B          103 GQVLGLVGTNGIGKSTALKILAG  125 (608)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCChHHHHHHHHhc
Confidence            35999999999999999998753

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=95.38  E-value=0.004  Score=49.93  Aligned_cols=22  Identities=23%  Similarity=0.436  Sum_probs=19.8

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||.+.+..
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g  195 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISP  195 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC
T ss_pred             CEEEEECCCCCCHHHHHHHhcc
Confidence            4899999999999999998754

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=95.35  E-value=0.011  Score=50.37  Aligned_cols=23  Identities=30%  Similarity=0.508  Sum_probs=20.2

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ..+|.++|+.|+||||+++.+.+
T Consensus        39 ~~~IvlvGlpGsGKSTia~~La~   61 (469)
T 1bif_A           39 PTLIVMVGLPARGKTYISKKLTR   61 (469)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH
Confidence            46889999999999999998753

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=95.24  E-value=0.012  Score=48.92  Aligned_cols=22  Identities=27%  Similarity=0.231  Sum_probs=19.6

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      =.++.|+|..|+|||||+..+.
T Consensus       178 Gei~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          178 GSITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcEEEEEcCCCCChHHHHHHHH
Confidence            4699999999999999999653

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=95.22  E-value=0.022  Score=44.57  Aligned_cols=35  Identities=20%  Similarity=0.151  Sum_probs=26.8

Q ss_pred             HHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          186 KNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       186 ~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .+.|.++|...       +..+.|+|..|+|||||...+...
T Consensus        88 i~~L~~~l~~~-------~~~v~~vG~~~vGKSslin~l~~~  122 (262)
T 3cnl_A           88 KVLLKKLSFDR-------LARVLIVGVPNTGKSTIINKLKGK  122 (262)
T ss_dssp             HHHHHHHCCCT-------TCEEEEEESTTSSHHHHHHHHHTT
T ss_pred             HHHHHHHHHHh-------hhheEEeCCCCCCHHHHHHHHhcc
Confidence            56777776321       157889999999999999988754

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=95.20  E-value=0.0098  Score=52.02  Aligned_cols=23  Identities=35%  Similarity=0.595  Sum_probs=20.3

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      =.+++|+|..|+|||||++.+..
T Consensus       369 G~~~~ivG~sGsGKSTLl~~l~g  391 (582)
T 3b60_A          369 GKTVALVGRSGSGKSTIASLITR  391 (582)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhh
Confidence            36899999999999999998753

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=95.20  E-value=0.015  Score=47.88  Aligned_cols=24  Identities=21%  Similarity=0.487  Sum_probs=20.2

Q ss_pred             CCCCEEEEEec-CCCCcHHHHHHHH
Q 037814          201 RKGPRIISLVG-MGGIGKTTLAQFA  224 (229)
Q Consensus       201 ~~~~~Vi~IvG-~gGvGKTTLa~~v  224 (229)
                      ..+.++|+|+| -||+||||+|-.+
T Consensus       140 ~~~~kvIav~s~KGGvGKTT~a~nL  164 (373)
T 3fkq_A          140 NDKSSVVIFTSPCGGVGTSTVAAAC  164 (373)
T ss_dssp             TTSCEEEEEECSSTTSSHHHHHHHH
T ss_pred             CCCceEEEEECCCCCChHHHHHHHH
Confidence            35689999997 7999999998654

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=95.18  E-value=0.012  Score=48.10  Aligned_cols=24  Identities=42%  Similarity=0.505  Sum_probs=20.8

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      +.=.++.|+|.+|+|||||+..+.
T Consensus        59 ~~G~i~~I~GppGsGKSTLal~la   82 (356)
T 3hr8_A           59 PRGRIVEIFGQESSGKTTLALHAI   82 (356)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHH
Confidence            335799999999999999998875

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=95.17  E-value=0.019  Score=49.32  Aligned_cols=25  Identities=16%  Similarity=-0.004  Sum_probs=21.5

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +...+|.+.|+.|+||||+++.+-.
T Consensus       393 ~~~~~I~l~GlsGsGKSTIa~~La~  417 (511)
T 1g8f_A          393 KQGFSIVLGNSLTVSREQLSIALLS  417 (511)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred             ccceEEEecccCCCCHHHHHHHHHH
Confidence            3468999999999999999998753

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=95.14  E-value=0.011  Score=51.75  Aligned_cols=23  Identities=35%  Similarity=0.580  Sum_probs=20.3

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      =.+++|+|..|.|||||++.+..
T Consensus       369 G~~~~ivG~sGsGKSTll~~l~g  391 (582)
T 3b5x_A          369 GKTVALVGRSGSGKSTIANLFTR  391 (582)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhc
Confidence            36899999999999999998753

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=95.12  E-value=0.027  Score=49.10  Aligned_cols=25  Identities=24%  Similarity=0.137  Sum_probs=21.2

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ..-.+|.|.|+.|+||||+|+.+-+
T Consensus       394 q~~~~I~l~GlsGSGKSTiA~~La~  418 (573)
T 1m8p_A          394 TQGFTIFLTGYMNSGKDAIARALQV  418 (573)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccceEEEeecCCCCCHHHHHHHHHH
Confidence            3457899999999999999998743

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=95.10  E-value=0.028  Score=43.97  Aligned_cols=35  Identities=20%  Similarity=0.134  Sum_probs=26.1

Q ss_pred             HHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          188 ELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       188 ~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      -+..||....    ++..-|-++|.+|.|||+||..+-+
T Consensus        92 ~l~~~l~~~~----~~~n~~~l~GppgtGKt~~a~ala~  126 (267)
T 1u0j_A           92 VFLGWATKKF----GKRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             HHHHHHTTCS----TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHhCCC----CCCcEEEEECCCCCCHHHHHHHHHh
Confidence            4566665432    3346699999999999999998764

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=94.96  E-value=0.012  Score=48.01  Aligned_cols=23  Identities=39%  Similarity=0.460  Sum_probs=20.1

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHh
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .-.++.|+|.+|+||||||.++.
T Consensus        60 ~G~iv~I~G~pGsGKTtLal~la   82 (349)
T 2zr9_A           60 RGRVIEIYGPESSGKTTVALHAV   82 (349)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            34699999999999999998864

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=94.92  E-value=0.0099  Score=49.74  Aligned_cols=24  Identities=25%  Similarity=0.263  Sum_probs=21.1

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhcC
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ...|+|+|..|+|||||.+.+...
T Consensus       157 g~~VgLVG~~gAGKSTLL~~Lsg~  180 (416)
T 1udx_A          157 IADVGLVGYPNAGKSSLLAAMTRA  180 (416)
T ss_dssp             SCSEEEECCGGGCHHHHHHHHCSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcC
Confidence            567999999999999999988653

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=94.84  E-value=0.021  Score=49.15  Aligned_cols=22  Identities=27%  Similarity=0.113  Sum_probs=19.2

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||++.+..
T Consensus       261 ~~i~I~GptGSGKTTlL~aL~~  282 (511)
T 2oap_1          261 FSAIVVGETASGKTTTLNAIMM  282 (511)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4699999999999999998753

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=94.82  E-value=0.015  Score=50.21  Aligned_cols=21  Identities=29%  Similarity=0.305  Sum_probs=19.1

Q ss_pred             CEEEEEecCCCCcHHHHHHHH
Q 037814          204 PRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      =.+++|+|..|+|||||++.+
T Consensus        39 Ge~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           39 GRSTLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             TSEEEEEESTTSSHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHH
Confidence            369999999999999999984

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=94.82  E-value=0.016  Score=51.00  Aligned_cols=25  Identities=16%  Similarity=0.211  Sum_probs=21.7

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      -.+..|+|+|..|+|||||.+.+..
T Consensus        43 l~lp~iaIvG~nGsGKSTLL~~I~G   67 (608)
T 3szr_A           43 LALPAIAVIGDQSSGKSSVLEALSG   67 (608)
T ss_dssp             CCCCCEECCCCTTSCHHHHHHHHHS
T ss_pred             ccCCeEEEECCCCChHHHHHHHHhC
Confidence            4577899999999999999998753

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=94.79  E-value=0.022  Score=50.10  Aligned_cols=24  Identities=29%  Similarity=0.354  Sum_probs=20.9

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHhc
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .-.+|.|.|+.|+||||+|+.+-+
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~   74 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEE   74 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHH
Confidence            457999999999999999998743

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=94.77  E-value=0.02  Score=46.28  Aligned_cols=23  Identities=30%  Similarity=0.273  Sum_probs=20.0

Q ss_pred             EEEEEecCCCCcHHHHHHHHhcC
Q 037814          205 RIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      -.|.|+|..|+|||||+..+.+.
T Consensus       166 ~kI~ivG~~~vGKSsLl~~l~~~  188 (329)
T 3o47_A          166 MRILMVGLDAAGKTTILYKLKLG  188 (329)
T ss_dssp             EEEEEEESTTSSHHHHHHHTCSS
T ss_pred             ceEEEECCCCccHHHHHHHHhCC
Confidence            36899999999999999987654

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=94.71  E-value=0.012  Score=51.56  Aligned_cols=23  Identities=35%  Similarity=0.531  Sum_probs=20.5

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      =.+++|+|..|.|||||++.+..
T Consensus       381 G~~~~ivG~sGsGKSTll~~l~g  403 (598)
T 3qf4_B          381 GQKVALVGPTGSGKTTIVNLLMR  403 (598)
T ss_dssp             TCEEEEECCTTSSTTHHHHHHTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhc
Confidence            46999999999999999998753

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=94.66  E-value=0.038  Score=44.95  Aligned_cols=25  Identities=24%  Similarity=0.154  Sum_probs=21.3

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +.-.++-|+|..|+||||||..+..
T Consensus       120 ~~G~i~~I~G~~GsGKTtla~~la~  144 (343)
T 1v5w_A          120 ESMAITEAFGEFRTGKTQLSHTLCV  144 (343)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            4457999999999999999988653

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=94.65  E-value=0.031  Score=48.81  Aligned_cols=26  Identities=19%  Similarity=0.267  Sum_probs=23.0

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ....+|+|+|..|+|||||...+...
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~   61 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGK   61 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCC
Confidence            55789999999999999999988754

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=94.62  E-value=0.014  Score=51.27  Aligned_cols=21  Identities=29%  Similarity=0.441  Sum_probs=18.4

Q ss_pred             EEEEecCCCCcHHHHHHHHhc
Q 037814          206 IISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       206 Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      -|-++|.+|+|||+||+.+.+
T Consensus       329 ~vLL~GppGtGKT~LAr~la~  349 (595)
T 3f9v_A          329 HILIIGDPGTAKSQMLQFISR  349 (595)
T ss_dssp             CEEEEESSCCTHHHHHHSSST
T ss_pred             ceEEECCCchHHHHHHHHHHH
Confidence            467999999999999998764

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=94.59  E-value=0.011  Score=51.54  Aligned_cols=22  Identities=36%  Similarity=0.561  Sum_probs=19.6

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      =.+++|+|..|.|||||++.+.
T Consensus       367 G~~~~ivG~sGsGKSTll~~l~  388 (578)
T 4a82_A          367 GETVAFVGMSGGGKSTLINLIP  388 (578)
T ss_dssp             TCEEEEECSTTSSHHHHHTTTT
T ss_pred             CCEEEEECCCCChHHHHHHHHh
Confidence            3699999999999999998764

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=94.52  E-value=0.015  Score=50.96  Aligned_cols=22  Identities=27%  Similarity=0.501  Sum_probs=19.7

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      =.+++|+|..|.|||||++.+.
T Consensus       369 Ge~~~ivG~sGsGKSTll~~l~  390 (587)
T 3qf4_A          369 GSLVAVLGETGSGKSTLMNLIP  390 (587)
T ss_dssp             TCEEEEECSSSSSHHHHHHTTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHh
Confidence            3689999999999999999865

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=94.52  E-value=0.019  Score=49.53  Aligned_cols=22  Identities=36%  Similarity=0.354  Sum_probs=20.1

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      =.++.|+|..|+|||||++.++
T Consensus       281 G~i~~i~G~~GsGKSTLl~~l~  302 (525)
T 1tf7_A          281 DSIILATGATGTGKTLLVSRFV  302 (525)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHH
Confidence            4699999999999999999876

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=94.45  E-value=0.021  Score=52.67  Aligned_cols=21  Identities=33%  Similarity=0.449  Sum_probs=19.7

Q ss_pred             EEEEEecCCCCcHHHHHHHHh
Q 037814          205 RIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+++|+|..|+|||||++.+.
T Consensus       462 e~v~LiGpNGsGKSTLLk~La  482 (986)
T 2iw3_A          462 RRYGICGPNGCGKSTLMRAIA  482 (986)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            589999999999999999986

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=94.40  E-value=0.035  Score=44.34  Aligned_cols=25  Identities=32%  Similarity=0.260  Sum_probs=20.8

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ..--|.|+|..|+|||||+..+.++
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~  178 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTN  178 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhC
Confidence            3467889999999999999887654

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=94.39  E-value=0.042  Score=46.47  Aligned_cols=21  Identities=33%  Similarity=0.589  Sum_probs=18.7

Q ss_pred             EEEEEecCCCCcHHHHHHHHh
Q 037814          205 RIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      ..+-|.|.+|+||||++..+.
T Consensus        46 ~~~li~G~aGTGKT~ll~~~~   66 (459)
T 3upu_A           46 HHVTINGPAGTGATTLTKFII   66 (459)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHHHH
Confidence            389999999999999998764

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=94.36  E-value=0.03  Score=48.50  Aligned_cols=24  Identities=25%  Similarity=0.289  Sum_probs=20.8

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHhc
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ...+|.+.|+.|+||||+|+.+..
T Consensus       371 ~~~~I~l~G~~GsGKSTia~~La~  394 (546)
T 2gks_A          371 QGFCVWLTGLPCAGKSTIAEILAT  394 (546)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceEEEccCCCCCCHHHHHHHHHH
Confidence            357899999999999999998753

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=94.33  E-value=0.016  Score=53.47  Aligned_cols=22  Identities=32%  Similarity=0.499  Sum_probs=19.9

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|+|..|+|||||.+.+.-
T Consensus       700 eivaIiGpNGSGKSTLLklLaG  721 (986)
T 2iw3_A          700 SRIAVIGPNGAGKSTLINVLTG  721 (986)
T ss_dssp             CEEEECSCCCHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            5899999999999999998853

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=94.33  E-value=0.058  Score=42.59  Aligned_cols=25  Identities=20%  Similarity=0.284  Sum_probs=21.2

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ....|+|+|.+|+|||||...+...
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l~~~  143 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRLAKK  143 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCceEEEEecCCCchHHHHHHHhcC
Confidence            3457899999999999999988754

>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A

Probab=94.32  E-value=0.03  Score=46.38  Aligned_cols=23  Identities=22%  Similarity=0.267  Sum_probs=19.0

Q ss_pred             CCCEEEEEec-CCCCcHHHHHHHH
Q 037814          202 KGPRIISLVG-MGGIGKTTLAQFA  224 (229)
Q Consensus       202 ~~~~Vi~IvG-~gGvGKTTLa~~v  224 (229)
                      ...+||+|++ -||+||||+|-.+
T Consensus       106 ~~~~vIav~s~KGGvGKTT~a~nL  129 (398)
T 3ez2_A          106 SEAYVIFISNLKGGVSKTVSTVSL  129 (398)
T ss_dssp             CSCEEEEECCSSSSSSHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCccHHHHHHHH
Confidence            5689999995 5999999988654

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=94.27  E-value=0.024  Score=48.99  Aligned_cols=25  Identities=28%  Similarity=0.332  Sum_probs=20.5

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ..--|+++|.+|+|||||...+.+.
T Consensus        40 ~~~kV~lvG~~~vGKSSLl~~l~~~   64 (535)
T 3dpu_A           40 QEIKVHLIGDGMAGKTSLLKQLIGE   64 (535)
T ss_dssp             CEEEEEEESSSCSSHHHHHHHHHC-
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcC
Confidence            3456889999999999999988754

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=94.24  E-value=0.024  Score=46.37  Aligned_cols=23  Identities=35%  Similarity=0.366  Sum_probs=19.9

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHh
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .-.++-|.|.+|+||||||.++.
T Consensus        62 ~G~ii~I~G~pGsGKTtLal~la   84 (356)
T 1u94_A           62 MGRIVEIYGPESSGKTTLTLQVI   84 (356)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            34699999999999999998764

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=94.19  E-value=0.033  Score=44.85  Aligned_cols=22  Identities=27%  Similarity=0.299  Sum_probs=19.8

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      -.++-|+|.+|+||||||.++.
T Consensus       107 G~i~~i~G~~GsGKT~la~~la  128 (324)
T 2z43_A          107 RTMTEFFGEFGSGKTQLCHQLS  128 (324)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHhHHHHHHH
Confidence            4699999999999999998865

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=94.04  E-value=0.045  Score=43.92  Aligned_cols=23  Identities=22%  Similarity=0.381  Sum_probs=20.4

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHh
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .-.++-|+|.+|+||||||.++.
T Consensus        97 ~g~i~~i~G~~gsGKT~la~~la  119 (322)
T 2i1q_A           97 SQSVTEFAGVFGSGKTQIMHQSC  119 (322)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            35799999999999999998865

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=94.04  E-value=0.035  Score=48.21  Aligned_cols=25  Identities=24%  Similarity=0.469  Sum_probs=22.2

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ....|+|+|..|+|||||...+...
T Consensus        64 ~~~~V~vvG~~n~GKSTLIN~Llg~   88 (550)
T 2qpt_A           64 GKPMVLVAGQYSTGKTSFIQYLLEQ   88 (550)
T ss_dssp             SCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4679999999999999999998764

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=93.97  E-value=0.012  Score=48.90  Aligned_cols=20  Identities=20%  Similarity=0.323  Sum_probs=18.7

Q ss_pred             EEEEecCCCCcHHHHHHHHh
Q 037814          206 IISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       206 Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      +++|+|..|.|||||.+.|+
T Consensus        62 ~~~lvG~NGaGKStLl~aI~   81 (415)
T 4aby_A           62 FCAFTGETGAGKSIIVDALG   81 (415)
T ss_dssp             EEEEEESHHHHHHHHTHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            99999999999999998874

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=93.96  E-value=0.03  Score=46.29  Aligned_cols=34  Identities=18%  Similarity=-0.019  Sum_probs=24.9

Q ss_pred             HHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          188 ELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       188 ~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ++++.+..-.     .=..++|+|..|+|||||++.+-+
T Consensus       163 raID~~~pi~-----rGQr~~IvG~sG~GKTtLl~~Iar  196 (422)
T 3ice_A          163 RVLDLASPIG-----RGQRGLIVAPPKAGKTMLLQNIAQ  196 (422)
T ss_dssp             HHHHHHSCCB-----TTCEEEEECCSSSSHHHHHHHHHH
T ss_pred             eeeeeeeeec-----CCcEEEEecCCCCChhHHHHHHHH
Confidence            4556554332     235899999999999999987743

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=93.80  E-value=0.085  Score=44.56  Aligned_cols=47  Identities=13%  Similarity=0.187  Sum_probs=30.4

Q ss_pred             echhhHHHHHHHhhcCC-CCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          181 GREKEKNELVNRLLCES-SEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       181 G~~~~~~~l~~~L~~~~-~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      |.++-.+.+.+.+.... ........-|+|+|.+|+|||||...+...
T Consensus       171 gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~  218 (456)
T 4dcu_A          171 GLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGE  218 (456)
T ss_dssp             THHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             chHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCC
Confidence            44444555554443221 112245678999999999999999988754

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=93.68  E-value=0.038  Score=44.35  Aligned_cols=22  Identities=18%  Similarity=0.220  Sum_probs=19.5

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      =.++-|.|.+|+||||||..+.
T Consensus        68 G~l~li~G~pG~GKTtl~l~ia   89 (315)
T 3bh0_A           68 RNFVLIAARPSMGKTAFALKQA   89 (315)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHH
Confidence            4689999999999999998864

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=93.68  E-value=0.089  Score=41.22  Aligned_cols=39  Identities=15%  Similarity=0.239  Sum_probs=25.4

Q ss_pred             hhHHHHHHHhhcCCCCCCCCCEEEEEecC-CCCcHHHHHHHH
Q 037814          184 KEKNELVNRLLCESSEERKGPRIISLVGM-GGIGKTTLAQFA  224 (229)
Q Consensus       184 ~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~-gGvGKTTLa~~v  224 (229)
                      +....|..-|.....  ..+.+||.|.|. ||+||||+|-.+
T Consensus        64 Ea~r~lrt~l~~~~~--~~~~kvI~vts~kgG~GKTt~a~nL  103 (271)
T 3bfv_A           64 EKFRGIRSNIMFANP--DSAVQSIVITSEAPGAGKSTIAANL  103 (271)
T ss_dssp             HHHHHHHHHHHHSST--TCCCCEEEEECSSTTSSHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcc--CCCCeEEEEECCCCCCcHHHHHHHH
Confidence            344445444433221  145789999986 899999998764

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=93.61  E-value=0.029  Score=45.68  Aligned_cols=24  Identities=29%  Similarity=0.418  Sum_probs=20.4

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhcC
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      +..|+|+|..++|||||...+.+.
T Consensus       158 la~V~lvG~~nvGKSTLln~L~~~  181 (342)
T 1lnz_A          158 LADVGLVGFPSVGKSTLLSVVSSA  181 (342)
T ss_dssp             CCCEEEESSTTSSHHHHHHHSEEE
T ss_pred             cCeeeeeCCCCCCHHHHHHHHHcC
Confidence            446899999999999999987653

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=93.43  E-value=0.046  Score=46.20  Aligned_cols=22  Identities=23%  Similarity=0.264  Sum_probs=19.6

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      =.++.|.|.+|+|||||+..+.
T Consensus       203 G~liiI~G~pG~GKTtl~l~ia  224 (454)
T 2r6a_A          203 SDLIIVAARPSVGKTAFALNIA  224 (454)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            4699999999999999998865

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=93.40  E-value=0.027  Score=50.12  Aligned_cols=20  Identities=30%  Similarity=0.584  Sum_probs=17.9

Q ss_pred             EEEEEecCCCCcHHHHHHHH
Q 037814          205 RIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      .+++|+|..|+|||||++.+
T Consensus       349 e~vaIiGpnGsGKSTLl~~i  368 (670)
T 3ux8_A          349 TFVAVTGVSGSGKSTLVNEV  368 (670)
T ss_dssp             SEEEEECSTTSSHHHHHTTT
T ss_pred             CEEEEEeeCCCCHHHHHHHH
Confidence            58999999999999999754

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=93.35  E-value=0.042  Score=52.54  Aligned_cols=22  Identities=36%  Similarity=0.608  Sum_probs=20.1

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|||..|.|||||++.++.
T Consensus      1060 e~v~ivG~sGsGKSTl~~~l~g 1081 (1284)
T 3g5u_A         1060 QTLALVGSSGCGKSTVVQLLER 1081 (1284)
T ss_dssp             SEEEEECSSSTTHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            5899999999999999999864

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=93.33  E-value=0.054  Score=43.11  Aligned_cols=23  Identities=22%  Similarity=0.281  Sum_probs=19.2

Q ss_pred             CCCEEEEEecC-CCCcHHHHHHHH
Q 037814          202 KGPRIISLVGM-GGIGKTTLAQFA  224 (229)
Q Consensus       202 ~~~~Vi~IvG~-gGvGKTTLa~~v  224 (229)
                      .+.+||.|.|. ||+||||+|-.+
T Consensus       102 ~~~kvI~vts~kgG~GKTtva~nL  125 (299)
T 3cio_A          102 TENNILMITGATPDSGKTFVSSTL  125 (299)
T ss_dssp             CSCCEEEEEESSSSSCHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCChHHHHHHH
Confidence            44689999997 899999998764

>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A

Probab=93.17  E-value=0.031  Score=46.46  Aligned_cols=23  Identities=35%  Similarity=0.492  Sum_probs=11.3

Q ss_pred             CCCEEEEEec-CCCCcHHHHHHHH
Q 037814          202 KGPRIISLVG-MGGIGKTTLAQFA  224 (229)
Q Consensus       202 ~~~~Vi~IvG-~gGvGKTTLa~~v  224 (229)
                      ...+||+|++ -||+||||++-.+
T Consensus       109 ~~~~vIav~s~KGGvGKTT~a~nL  132 (403)
T 3ez9_A          109 KSPYVIFVVNLKGGVSKTVSTVTL  132 (403)
T ss_dssp             CSCEEEEECCC--------CHHHH
T ss_pred             CCceEEEEEcCCCCchHHHHHHHH
Confidence            5679999995 5999999987654

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=93.12  E-value=0.042  Score=48.81  Aligned_cols=17  Identities=41%  Similarity=0.890  Sum_probs=16.1

Q ss_pred             EEEEEecCCCCcHHHHH
Q 037814          205 RIISLVGMGGIGKTTLA  221 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa  221 (229)
                      .+++|+|..|+|||||+
T Consensus        45 e~~~liGpNGaGKSTLl   61 (670)
T 3ux8_A           45 KLVVLTGLSGSGKSSLA   61 (670)
T ss_dssp             SEEEEECSTTSSHHHHH
T ss_pred             CEEEEECCCCCCHHHHh
Confidence            59999999999999996

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=92.96  E-value=0.052  Score=48.93  Aligned_cols=21  Identities=19%  Similarity=0.306  Sum_probs=19.3

Q ss_pred             EEEEEecCCCCcHHHHHHHHh
Q 037814          205 RIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+++|+|..|.|||||.+.+.
T Consensus       577 ~i~~I~GpNGsGKSTlLr~ia  597 (765)
T 1ewq_A          577 ELVLITGPNMAGKSTFLRQTA  597 (765)
T ss_dssp             CEEEEESCSSSSHHHHHHHHH
T ss_pred             cEEEEECCCCCChHHHHHHHH
Confidence            689999999999999999874

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=92.67  E-value=0.074  Score=43.73  Aligned_cols=24  Identities=29%  Similarity=0.296  Sum_probs=21.5

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHhc
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ....|.|=|.-|+||||+++.+.+
T Consensus        48 ~~~fIt~EG~dGsGKTT~~~~Lae   71 (376)
T 1of1_A           48 TLLRVYIDGPHGMGKTTTTQLLVA   71 (376)
T ss_dssp             EEEEEEECSSTTSSHHHHHHHHHC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999875

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=92.66  E-value=0.061  Score=48.78  Aligned_cols=23  Identities=22%  Similarity=0.235  Sum_probs=20.3

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHh
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .-.+++|+|..|.|||||.+.+.
T Consensus       606 ~g~i~~ItGpNGsGKSTlLr~ia  628 (800)
T 1wb9_A          606 QRRMLIITGPNMGGKSTYMRQTA  628 (800)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCChHHHHHHHH
Confidence            34699999999999999999874

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=92.59  E-value=0.063  Score=44.09  Aligned_cols=22  Identities=41%  Similarity=0.351  Sum_probs=19.1

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      -.++-|+|.+|+||||||..+.
T Consensus        74 G~li~I~G~pGsGKTtlal~la   95 (366)
T 1xp8_A           74 GRITEIYGPESGGKTTLALAIV   95 (366)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcEEEEEcCCCCChHHHHHHHH
Confidence            4688899999999999998764

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=92.59  E-value=0.082  Score=41.80  Aligned_cols=23  Identities=17%  Similarity=0.286  Sum_probs=19.1

Q ss_pred             CCCEEEEEecC-CCCcHHHHHHHH
Q 037814          202 KGPRIISLVGM-GGIGKTTLAQFA  224 (229)
Q Consensus       202 ~~~~Vi~IvG~-gGvGKTTLa~~v  224 (229)
                      .+.+||.|+|. ||+||||+|-.+
T Consensus        90 ~~~kvI~vts~kgG~GKTtva~nL  113 (286)
T 3la6_A           90 AQNNVLMMTGVSPSIGMTFVCANL  113 (286)
T ss_dssp             TTCCEEEEEESSSSSSHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCcHHHHHHHH
Confidence            45689999986 899999998654

>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}

Probab=92.58  E-value=0.089  Score=44.23  Aligned_cols=26  Identities=23%  Similarity=0.298  Sum_probs=22.9

Q ss_pred             CCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          201 RKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       201 ~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ....+|..|.|.+|.||||+.+...+
T Consensus       158 ~~~~~v~~I~G~aGsGKTt~I~~~~~  183 (446)
T 3vkw_A          158 VSSAKVVLVDGVPGCGKTKEILSRVN  183 (446)
T ss_dssp             CCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred             cccccEEEEEcCCCCCHHHHHHHHhc
Confidence            36789999999999999999988764

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=92.54  E-value=0.059  Score=45.63  Aligned_cols=21  Identities=43%  Similarity=0.529  Sum_probs=18.3

Q ss_pred             EEEEecCCCCcHHHHHHHHhc
Q 037814          206 IISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       206 Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .++|+|..|+|||||++.+.+
T Consensus       153 ~~~i~G~sGvGKTtL~~~l~~  173 (473)
T 1sky_E          153 KIGLFGGAGVGKTVLIQELIH  173 (473)
T ss_dssp             EEEEECCSSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCccHHHHHHHh
Confidence            589999999999999997643

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=92.34  E-value=0.16  Score=42.77  Aligned_cols=25  Identities=28%  Similarity=0.301  Sum_probs=22.8

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ..+.||+|+|...+||+||...++.
T Consensus        65 ~~v~vVsV~G~~~~GKStLLN~llg   89 (447)
T 3q5d_A           65 KEVVAVSVAGAFRKGKSFLMDFMLR   89 (447)
T ss_dssp             SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHhh
Confidence            5699999999999999999999863

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=92.32  E-value=0.064  Score=51.29  Aligned_cols=22  Identities=36%  Similarity=0.548  Sum_probs=19.9

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      =.+++|||..|.|||||++.+.
T Consensus       416 G~~~~ivG~sGsGKSTl~~ll~  437 (1284)
T 3g5u_A          416 GQTVALVGNSGCGKSTTVQLMQ  437 (1284)
T ss_dssp             TCEEEEECCSSSSHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHh
Confidence            3689999999999999999875

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=92.14  E-value=0.081  Score=44.55  Aligned_cols=22  Identities=18%  Similarity=0.154  Sum_probs=19.5

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      -.++-|.|.+|+||||||..+.
T Consensus       200 G~l~ii~G~pg~GKT~lal~ia  221 (444)
T 2q6t_A          200 GSLNIIAARPAMGKTAFALTIA  221 (444)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHH
Confidence            4689999999999999998764

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=92.12  E-value=0.074  Score=45.10  Aligned_cols=21  Identities=24%  Similarity=0.387  Sum_probs=18.7

Q ss_pred             EEEEecCCCCcHHHHHHHHhc
Q 037814          206 IISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       206 Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .|+|+|..|+|||||...+.+
T Consensus       226 kV~ivG~~nvGKSSLln~L~~  246 (462)
T 3geh_A          226 KVAIVGRPNVGKSSLLNAWSQ  246 (462)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHhC
Confidence            389999999999999998764

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=92.07  E-value=0.062  Score=45.73  Aligned_cols=22  Identities=23%  Similarity=0.270  Sum_probs=18.2

Q ss_pred             EEEEecCCCCcHHHHHHHHhcC
Q 037814          206 IISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       206 Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .|+|+|.+|+|||||...+.+.
T Consensus       235 kV~ivG~~nvGKSSLln~L~~~  256 (476)
T 3gee_A          235 STVIAGKPNAGKSTLLNTLLGQ  256 (476)
T ss_dssp             EEEEECCTTSSHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3899999999999999987654

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=92.05  E-value=0.032  Score=50.78  Aligned_cols=19  Identities=37%  Similarity=0.576  Sum_probs=17.6

Q ss_pred             EEEEEecCCCCcHHHHHHH
Q 037814          205 RIISLVGMGGIGKTTLAQF  223 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~  223 (229)
                      .+++|+|..|+|||||++.
T Consensus       524 eiv~I~G~nGSGKSTLl~~  542 (842)
T 2vf7_A          524 VMTSVTGVSGSGKSTLVSQ  542 (842)
T ss_dssp             SEEEEECCTTSSHHHHCCC
T ss_pred             CEEEEEcCCCcCHHHHHHH
Confidence            4899999999999999986

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=91.99  E-value=0.091  Score=42.61  Aligned_cols=22  Identities=18%  Similarity=0.200  Sum_probs=19.4

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      -.++-|.|.+|+||||||..+.
T Consensus        46 G~LiiIaG~pG~GKTt~al~ia   67 (338)
T 4a1f_A           46 GSLVIIGARPSMGKTSLMMNMV   67 (338)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHH
Confidence            3688999999999999998864

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=91.97  E-value=0.082  Score=46.12  Aligned_cols=21  Identities=33%  Similarity=0.498  Sum_probs=18.7

Q ss_pred             EEEEEecCCCCcHHHHHHHHh
Q 037814          205 RIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .++-|.|.+|+||||++..+.
T Consensus       205 ~~~~I~G~pGTGKTt~i~~l~  225 (574)
T 3e1s_A          205 RLVVLTGGPGTGKSTTTKAVA  225 (574)
T ss_dssp             SEEEEECCTTSCHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHH
Confidence            588899999999999998865

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=91.85  E-value=0.053  Score=51.97  Aligned_cols=22  Identities=32%  Similarity=0.549  Sum_probs=19.9

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ..|+|||..|.|||||++.++.
T Consensus      1106 e~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A         1106 QTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp             CEEEEECSTTSSTTSHHHHHTT
T ss_pred             CEEEEECCCCChHHHHHHHHhc
Confidence            5899999999999999998763

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=91.81  E-value=0.081  Score=50.72  Aligned_cols=23  Identities=30%  Similarity=0.567  Sum_probs=20.3

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      =..++|||..|+|||||++.+..
T Consensus       444 G~~vaivG~sGsGKSTll~ll~~  466 (1321)
T 4f4c_A          444 GQTVALVGSSGCGKSTIISLLLR  466 (1321)
T ss_dssp             TCEEEEEECSSSCHHHHHHHHTT
T ss_pred             CcEEEEEecCCCcHHHHHHHhcc
Confidence            36899999999999999998753

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=91.68  E-value=0.16  Score=46.07  Aligned_cols=51  Identities=27%  Similarity=0.252  Sum_probs=35.3

Q ss_pred             CcceechhhHHHHHHHhhcCCCC-------CCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          177 SEIFGREKEKNELVNRLLCESSE-------ERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~-------~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .++.|.++.++.|.+.+...-..       .....+=|-++|.+|.|||.||+.|-+.
T Consensus       477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e  534 (806)
T 3cf2_A          477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE  534 (806)
T ss_dssp             TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT
T ss_pred             HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH
Confidence            46788998888887765432100       0122344669999999999999998654

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=91.68  E-value=0.093  Score=48.37  Aligned_cols=21  Identities=19%  Similarity=0.113  Sum_probs=19.5

Q ss_pred             CEEEEEecCCCCcHHHHHHHH
Q 037814          204 PRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      -.+++|+|..|.|||||.+.|
T Consensus       662 g~i~~ItGpNGsGKSTlLr~i  682 (934)
T 3thx_A          662 QMFHIITGPNMGGKSTYIRQT  682 (934)
T ss_dssp             BCEEEEECCTTSSHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHH
Confidence            479999999999999999987

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=91.53  E-value=0.23  Score=37.75  Aligned_cols=31  Identities=23%  Similarity=0.342  Sum_probs=22.5

Q ss_pred             hHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHH
Q 037814          185 EKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQF  223 (229)
Q Consensus       185 ~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~  223 (229)
                      ..++++..+..+        ..+.|+|..|+||||+...
T Consensus        65 ~q~~~i~~i~~g--------~~~~i~g~TGsGKTt~~~~   95 (235)
T 3llm_A           65 FESEILEAISQN--------SVVIIRGATGCGKTTQVPQ   95 (235)
T ss_dssp             GHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHH
T ss_pred             HHHHHHHHHhcC--------CEEEEEeCCCCCcHHhHHH
Confidence            345556555544        4789999999999987654

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=91.53  E-value=0.078  Score=48.76  Aligned_cols=23  Identities=17%  Similarity=0.242  Sum_probs=20.2

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHh
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .-.+++|+|..|.|||||.+.|.
T Consensus       672 ~g~i~~ItGPNGaGKSTlLr~i~  694 (918)
T 3thx_B          672 SERVMIITGPNMGGKSSYIKQVA  694 (918)
T ss_dssp             SCCEEEEESCCCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCchHHHHHHHH
Confidence            35799999999999999999863

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=91.35  E-value=0.054  Score=49.86  Aligned_cols=20  Identities=30%  Similarity=0.584  Sum_probs=18.3

Q ss_pred             EEEEEecCCCCcHHHHHHHH
Q 037814          205 RIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      .+++|+|..|+|||||++.+
T Consensus       651 eiv~I~G~nGSGKSTLl~~l  670 (972)
T 2r6f_A          651 TFVAVTGVSGSGKSTLVNEV  670 (972)
T ss_dssp             SEEECCBCTTSSHHHHHTTT
T ss_pred             CEEEEEcCCCCCHHHHHHHH
Confidence            48999999999999999874

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=91.26  E-value=0.11  Score=43.78  Aligned_cols=22  Identities=18%  Similarity=0.220  Sum_probs=19.5

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      -.++-|.|.+|+||||||-.+.
T Consensus       197 G~liiIaG~pG~GKTtlal~ia  218 (444)
T 3bgw_A          197 RNFVLIAARPSMGKTAFALKQA  218 (444)
T ss_dssp             SCEEEEEECSSSSHHHHHHHHH
T ss_pred             CcEEEEEeCCCCChHHHHHHHH
Confidence            4689999999999999998764

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=91.20  E-value=0.11  Score=42.96  Aligned_cols=35  Identities=23%  Similarity=0.133  Sum_probs=25.8

Q ss_pred             HHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          187 NELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       187 ~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      -++++.|..-.    . =.-++|+|-.|+|||||++.|-+
T Consensus       163 iraID~l~Pig----r-GQR~lIfg~~g~GKT~Ll~~Ia~  197 (427)
T 3l0o_A          163 TRLIDLFAPIG----K-GQRGMIVAPPKAGKTTILKEIAN  197 (427)
T ss_dssp             HHHHHHHSCCB----T-TCEEEEEECTTCCHHHHHHHHHH
T ss_pred             chhhhhccccc----C-CceEEEecCCCCChhHHHHHHHH
Confidence            36677775422    1 25779999999999999987765

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=90.96  E-value=0.12  Score=48.17  Aligned_cols=21  Identities=29%  Similarity=0.243  Sum_probs=19.4

Q ss_pred             CEEEEEecCCCCcHHHHHHHH
Q 037814          204 PRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      -.+++|+|..|.|||||.+.+
T Consensus       789 g~i~~ItGpNgsGKSTlLr~i  809 (1022)
T 2o8b_B          789 AYCVLVTGPNMGGKSTLMRQA  809 (1022)
T ss_dssp             CCEEEEECCTTSSHHHHHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHH
Confidence            479999999999999999986

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=90.95  E-value=0.17  Score=39.87  Aligned_cols=13  Identities=38%  Similarity=0.787  Sum_probs=11.4

Q ss_pred             CCCCcHHHHHHHH
Q 037814          212 MGGIGKTTLAQFA  224 (229)
Q Consensus       212 ~gGvGKTTLa~~v  224 (229)
                      -||+||||+|-.+
T Consensus        45 KGGvGKTT~a~nL   57 (298)
T 2oze_A           45 KGGVGKSKLSTMF   57 (298)
T ss_dssp             SSSSSHHHHHHHH
T ss_pred             CCCchHHHHHHHH
Confidence            8999999998764

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=90.89  E-value=0.18  Score=41.41  Aligned_cols=39  Identities=18%  Similarity=0.187  Sum_probs=27.3

Q ss_pred             eechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          180 FGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       180 vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .|.+.-++.|.+++.         -..|.++|..|+|||||...+.+.
T Consensus       147 ~gi~~L~~~I~~~~~---------~~~i~~vG~~nvGKStliN~L~~~  185 (369)
T 3ec1_A          147 IGMAKVMEAINRYRE---------GGDVYVVGCTNVGKSTFINRIIEE  185 (369)
T ss_dssp             BTHHHHHHHHHHHHT---------TSCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhhcc---------cCcEEEEcCCCCchHHHHHHHHhh
Confidence            344555555555441         136889999999999999988753

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=90.89  E-value=0.13  Score=42.33  Aligned_cols=21  Identities=19%  Similarity=0.267  Sum_probs=18.1

Q ss_pred             EEEEEecCCCCcHHHHHHHHh
Q 037814          205 RIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .-+.|+|..|.|||||++.+.
T Consensus        36 ~~~~i~G~~G~GKs~~~~~~~   56 (392)
T 4ag6_A           36 SNWTILAKPGAGKSFTAKMLL   56 (392)
T ss_dssp             CCEEEECCTTSSHHHHHHHHH
T ss_pred             CceEEEcCCCCCHHHHHHHHH
Confidence            356899999999999999864

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=90.85  E-value=0.18  Score=45.08  Aligned_cols=24  Identities=17%  Similarity=0.084  Sum_probs=21.0

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhcC
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ...|+|+|..|+|||||...+...
T Consensus        69 ~~~V~VvG~~naGKSSLlNaLlg~   92 (695)
T 2j69_A           69 VFRLLVLGDMKRGKSTFLNALIGE   92 (695)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            367999999999999999988754

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=90.74  E-value=0.26  Score=40.68  Aligned_cols=45  Identities=18%  Similarity=0.270  Sum_probs=32.1

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .++|....+.++.+.+..-..   .+..| -|.|-.|+|||++|+.++.
T Consensus       138 ~~ig~s~~m~~l~~~i~~~a~---~~~~v-li~Ge~GtGK~~lAr~ih~  182 (387)
T 1ny5_A          138 EYVFESPKMKEILEKIKKISC---AECPV-LITGESGVGKEVVARLIHK  182 (387)
T ss_dssp             CCCCCSHHHHHHHHHHHHHTT---CCSCE-EEECSTTSSHHHHHHHHHH
T ss_pred             hhhhccHHhhHHHHHHHHhcC---CCCCe-EEecCCCcCHHHHHHHHHH
Confidence            356666667777766644321   33555 7999999999999999874

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=90.21  E-value=0.36  Score=40.70  Aligned_cols=24  Identities=29%  Similarity=0.310  Sum_probs=21.7

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      ..+.||+|+|.-+.||+||...++
T Consensus        65 ~~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           65 KEVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             CceEEEEEECCCCCchhHHHHHHH
Confidence            569999999999999999999664

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=90.05  E-value=0.16  Score=44.60  Aligned_cols=20  Identities=40%  Similarity=0.403  Sum_probs=17.7

Q ss_pred             EEEEEecCCCCcHHHHHHHH
Q 037814          205 RIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      +++-|.|.+|.||||++..+
T Consensus       165 ~~~vi~G~pGTGKTt~l~~l  184 (608)
T 1w36_D          165 RISVISGGPGTGKTTTVAKL  184 (608)
T ss_dssp             SEEEEECCTTSTHHHHHHHH
T ss_pred             CCEEEEeCCCCCHHHHHHHH
Confidence            58899999999999988765

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=90.04  E-value=0.18  Score=44.31  Aligned_cols=26  Identities=19%  Similarity=0.112  Sum_probs=20.7

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      +..--|+|+|..|+|||||...+..+
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~  190 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYD  190 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHh
Confidence            33456779999999999999887543

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=89.63  E-value=0.14  Score=43.75  Aligned_cols=22  Identities=14%  Similarity=0.163  Sum_probs=19.2

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      =.++-|.|.+|+||||||.++.
T Consensus       242 G~l~li~G~pG~GKT~lal~~a  263 (503)
T 1q57_A          242 GEVIMVTSGSGMVMSTFVRQQA  263 (503)
T ss_dssp             TCEEEEEESSCHHHHHHHHHHH
T ss_pred             CeEEEEeecCCCCchHHHHHHH
Confidence            4688999999999999998764

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=89.45  E-value=0.2  Score=40.10  Aligned_cols=22  Identities=27%  Similarity=0.268  Sum_probs=18.9

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .-|.|.|..|+||||||..+..
T Consensus       145 ~~vl~~G~sG~GKSt~a~~l~~  166 (314)
T 1ko7_A          145 VGVLITGDSGIGKSETALELIK  166 (314)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHh
Confidence            5689999999999999987653

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=89.45  E-value=0.25  Score=43.19  Aligned_cols=24  Identities=21%  Similarity=0.137  Sum_probs=20.8

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      +...-|+|+|..++|||||...+.
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll  198 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIM  198 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHH
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHH
Confidence            556789999999999999998763

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=89.22  E-value=0.2  Score=41.12  Aligned_cols=23  Identities=22%  Similarity=0.381  Sum_probs=20.0

Q ss_pred             EEEEEecCCCCcHHHHHHHHhcC
Q 037814          205 RIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ..|.++|..|+|||||...+.+.
T Consensus       161 ~~i~~vG~~nvGKStliN~L~~~  183 (368)
T 3h2y_A          161 KDVYVVGCTNVGKSTFINRMIKE  183 (368)
T ss_dssp             SCEEEEEBTTSSHHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHhh
Confidence            46889999999999999988753

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=88.87  E-value=0.26  Score=40.59  Aligned_cols=25  Identities=28%  Similarity=0.432  Sum_probs=21.2

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+..-|+|||.+.+|||||...+-+
T Consensus        70 ~g~a~V~ivG~PNvGKSTL~n~Lt~   94 (376)
T 4a9a_A           70 TGVASVGFVGFPSVGKSTLLSKLTG   94 (376)
T ss_dssp             CSSEEEEEECCCCHHHHHHHHHHHS
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhC
Confidence            3457899999999999999988754

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=88.56  E-value=0.22  Score=45.85  Aligned_cols=18  Identities=28%  Similarity=0.617  Sum_probs=16.3

Q ss_pred             EEEEEecCCCCcHHHHHH
Q 037814          205 RIISLVGMGGIGKTTLAQ  222 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~  222 (229)
                      .+++|+|..|+|||||+.
T Consensus       611 eiv~I~G~SGSGKSTLl~  628 (916)
T 3pih_A          611 VFVCVTGVSGSGKSSLVM  628 (916)
T ss_dssp             SEEEEECSTTSSHHHHHH
T ss_pred             cEEEEEccCCCChhhhHH
Confidence            589999999999999973

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=88.43  E-value=0.52  Score=41.60  Aligned_cols=31  Identities=26%  Similarity=0.324  Sum_probs=20.5

Q ss_pred             hhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHH
Q 037814          183 EKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLA  221 (229)
Q Consensus       183 ~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa  221 (229)
                      +..++.|...|...        .+.-|.|++|.||||.+
T Consensus       192 ~~Q~~AV~~al~~~--------~~~lI~GPPGTGKT~ti  222 (646)
T 4b3f_X          192 TSQKEAVLFALSQK--------ELAIIHGPPGTGKTTTV  222 (646)
T ss_dssp             HHHHHHHHHHHHCS--------SEEEEECCTTSCHHHHH
T ss_pred             HHHHHHHHHHhcCC--------CceEEECCCCCCHHHHH
Confidence            34455566556432        26678999999999643

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=88.39  E-value=0.074  Score=45.34  Aligned_cols=23  Identities=30%  Similarity=0.404  Sum_probs=19.7

Q ss_pred             EEEEEecCCCCcHHHHHHHHhcC
Q 037814          205 RIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      -.|+|+|.+|+|||||...+.+.
T Consensus       244 ~kV~ivG~pnvGKSSLln~L~~~  266 (482)
T 1xzp_A          244 LRMVIVGKPNVGKSTLLNRLLNE  266 (482)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHH
T ss_pred             CEEEEECcCCCcHHHHHHHHHCC
Confidence            46789999999999999887654

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...

Probab=87.76  E-value=0.25  Score=41.87  Aligned_cols=22  Identities=41%  Similarity=0.474  Sum_probs=18.9

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .-++|+|-.|+|||||++.+-+
T Consensus       154 Qr~~Ifgg~G~GKT~L~~~i~~  175 (482)
T 2ck3_D          154 GKIGLFGGAGVGKTVLIMELIN  175 (482)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeeeeecCCCCChHHHHHHHHH
Confidence            5789999999999999977643

>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*

Probab=87.12  E-value=0.28  Score=41.70  Aligned_cols=22  Identities=41%  Similarity=0.474  Sum_probs=18.8

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .-++|+|-.|+|||+|++.+-+
T Consensus       166 qr~gIfgg~GvGKT~L~~~l~~  187 (498)
T 1fx0_B          166 GKIGLFGGAGVGKTVLIMELIN  187 (498)
T ss_dssp             CCEEEEECSSSSHHHHHHHHHH
T ss_pred             CeEEeecCCCCCchHHHHHHHH
Confidence            5689999999999999977644

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=86.10  E-value=0.5  Score=38.67  Aligned_cols=46  Identities=17%  Similarity=0.234  Sum_probs=31.3

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ..++|....+.++.+.+..-..   .... +-|.|-.|+||+++|+.+++
T Consensus       129 ~~~ig~s~~~~~~~~~~~~~a~---~~~~-vli~GesGtGKe~lAr~ih~  174 (368)
T 3dzd_A          129 IEFVGEHPKILEIKRLIPKIAK---SKAP-VLITGESGTGKEIVARLIHR  174 (368)
T ss_dssp             CCCCCCSHHHHHHHHHHHHHHT---SCSC-EEEECCTTSSHHHHHHHHHH
T ss_pred             ccccccchHHHHHHhhhhhhhc---cchh-heEEeCCCchHHHHHHHHHH
Confidence            3577877777666665532221   2233 55899999999999999874

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=86.08  E-value=0.18  Score=43.30  Aligned_cols=21  Identities=19%  Similarity=0.292  Sum_probs=19.1

Q ss_pred             EEEEEecCCCCcHHHHHHHHh
Q 037814          205 RIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+..|+|..|.|||||...+|
T Consensus        61 g~n~i~G~NGaGKS~lleAl~   81 (517)
T 4ad8_A           61 GFCAFTGETGAGKSIIVDALG   81 (517)
T ss_dssp             SEEEEEESHHHHHHHHTHHHH
T ss_pred             CeEEEEcCCCCCHHHHHHHHH
Confidence            488999999999999999884

>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*

Probab=85.95  E-value=0.22  Score=41.93  Aligned_cols=23  Identities=9%  Similarity=0.161  Sum_probs=19.1

Q ss_pred             EEEEEecCCCCcHHHHHHHHhcC
Q 037814          205 RIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .-++|+|-.|+|||||+..|.+.
T Consensus       148 Qr~~Ifgg~G~GKt~L~~~Ia~~  170 (464)
T 3gqb_B          148 QKLPIFSGSGLPANEIAAQIARQ  170 (464)
T ss_dssp             CBCCEEEETTSCHHHHHHHHHHH
T ss_pred             CEEEEecCCCCCchHHHHHHHHH
Confidence            35678999999999999987654

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=85.91  E-value=0.85  Score=41.10  Aligned_cols=42  Identities=17%  Similarity=0.158  Sum_probs=29.4

Q ss_pred             HHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          186 KNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       186 ~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .++|.+.|..-.....-.+..|+|||..++|||||...+...
T Consensus        33 inkl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g~   74 (772)
T 3zvr_A           33 VNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGR   74 (772)
T ss_dssp             HHHHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHHHHHSS
T ss_pred             HHHHHHHHHhcCccccCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            444555554333222356889999999999999999988653

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=85.91  E-value=0.46  Score=41.82  Aligned_cols=19  Identities=26%  Similarity=0.312  Sum_probs=16.0

Q ss_pred             EEEEecCCCCcHHHHHHHH
Q 037814          206 IISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       206 Vi~IvG~gGvGKTTLa~~v  224 (229)
                      +.-|.|.+|.||||++..+
T Consensus       197 ~~li~GppGTGKT~~~~~~  215 (624)
T 2gk6_A          197 LSLIQGPPGTGKTVTSATI  215 (624)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             CeEEECCCCCCHHHHHHHH
Confidence            6779999999999976654

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=85.69  E-value=0.46  Score=37.97  Aligned_cols=21  Identities=33%  Similarity=0.295  Sum_probs=17.6

Q ss_pred             EEEEEecCCCCcHHHHHHHHh
Q 037814          205 RIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .-|.|.|..|+||||||-.+-
T Consensus       148 ~gvli~G~sG~GKStlal~l~  168 (312)
T 1knx_A          148 VGVLLTGRSGIGKSECALDLI  168 (312)
T ss_dssp             EEEEEEESSSSSHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHH
Confidence            447899999999999997754

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=85.43  E-value=0.42  Score=47.48  Aligned_cols=23  Identities=35%  Similarity=0.368  Sum_probs=20.1

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHH
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      +.-++|-|+|.+|+||||||.++
T Consensus      1425 ~~g~~vll~GppGtGKT~LA~al 1447 (2050)
T 3cmu_A         1425 PMGRIVEIYGPESSGKTTLTLQV 1447 (2050)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHH
Confidence            34579999999999999999876

>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*

Probab=85.41  E-value=0.27  Score=41.40  Aligned_cols=22  Identities=14%  Similarity=0.158  Sum_probs=18.7

Q ss_pred             EEEEecCCCCcHHHHHHHHhcC
Q 037814          206 IISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       206 Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      -++|+|-.|+|||||+..|.+.
T Consensus       153 r~~Ifgg~G~GKt~L~~~Ia~~  174 (465)
T 3vr4_D          153 KLPVFSGSGLPHKELAAQIARQ  174 (465)
T ss_dssp             BCCEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEeCCCCcChHHHHHHHHHH
Confidence            4688999999999999987654

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=85.17  E-value=0.39  Score=40.68  Aligned_cols=23  Identities=26%  Similarity=0.235  Sum_probs=19.7

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHh
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      ....|+|+|..++|||||...+.
T Consensus        42 ~~~~i~iiG~vd~GKSTLi~~Ll   64 (467)
T 1r5b_A           42 EHVNIVFIGHVDAGKSTLGGNIL   64 (467)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHH
T ss_pred             CeeEEEEEECCCCCHHHHHHHHH
Confidence            35678999999999999998763

>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*

Probab=85.04  E-value=0.29  Score=41.41  Aligned_cols=23  Identities=9%  Similarity=0.196  Sum_probs=18.9

Q ss_pred             EEEEEecCCCCcHHHHHHHHhcC
Q 037814          205 RIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .-++|+|-.|+|||||+..|.++
T Consensus       153 Qr~~Ifgg~G~GKt~Ll~~Ia~~  175 (469)
T 2c61_A          153 QKLPIFSASGLPHNEIALQIARQ  175 (469)
T ss_dssp             CBCCEEECTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            45678899999999999887653

>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*

Probab=84.61  E-value=0.51  Score=40.93  Aligned_cols=34  Identities=15%  Similarity=0.185  Sum_probs=25.1

Q ss_pred             HHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          188 ELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       188 ~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ++++.|.--.     +=.-++|+|-.|+|||+|++.+-+
T Consensus       221 rvID~l~Pig-----rGqr~~Ifgg~g~GKT~L~~~ia~  254 (600)
T 3vr4_A          221 RVIDTFFPVT-----KGGAAAVPGPFGAGKTVVQHQIAK  254 (600)
T ss_dssp             HHHHHHSCCB-----TTCEEEEECCTTSCHHHHHHHHHH
T ss_pred             hhhhccCCcc-----CCCEEeeecCCCccHHHHHHHHHh
Confidence            4566664321     125789999999999999998865

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=84.58  E-value=1.1  Score=40.60  Aligned_cols=33  Identities=27%  Similarity=0.382  Sum_probs=23.6

Q ss_pred             hhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814          184 KEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       184 ~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      ...+.|...|..+        .++.|+|..|.||||++..+
T Consensus        97 ~q~~~i~~~l~~~--------~~vii~gpTGSGKTtllp~l  129 (773)
T 2xau_A           97 AQRDEFLKLYQNN--------QIMVFVGETGSGKTTQIPQF  129 (773)
T ss_dssp             GGHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHH
T ss_pred             HHHHHHHHHHhCC--------CeEEEECCCCCCHHHHHHHH
Confidence            3455666666443        48899999999999965544

>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A

Probab=84.36  E-value=0.37  Score=41.61  Aligned_cols=22  Identities=23%  Similarity=0.244  Sum_probs=19.7

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .-++|+|-.|+|||+|++.+-+
T Consensus       228 qr~~I~g~~g~GKT~L~~~ia~  249 (588)
T 3mfy_A          228 GTAAIPGPAGSGKTVTQHQLAK  249 (588)
T ss_dssp             CEEEECSCCSHHHHHHHHHHHH
T ss_pred             CeEEeecCCCCCHHHHHHHHHh
Confidence            5789999999999999998755

>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C

Probab=84.02  E-value=0.5  Score=40.77  Aligned_cols=22  Identities=23%  Similarity=0.163  Sum_probs=19.6

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .-++|+|-.|+|||+|++.+-+
T Consensus       222 qr~~Ifg~~g~GKT~l~~~ia~  243 (578)
T 3gqb_A          222 GTAAIPGPFGSGKSVTQQSLAK  243 (578)
T ss_dssp             CEEEECCCTTSCHHHHHHHHHH
T ss_pred             CEEeeeCCCCccHHHHHHHHHh
Confidence            5789999999999999998865

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=83.32  E-value=0.6  Score=45.72  Aligned_cols=22  Identities=36%  Similarity=0.436  Sum_probs=19.7

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      -.+|-|.|.+|+||||||.++.
T Consensus       732 G~lVlI~G~PG~GKTtLal~lA  753 (1706)
T 3cmw_A          732 GRIVEIYGPESSGKTTLTLQVI  753 (1706)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHH
T ss_pred             CceEEEECCCCCCcHHHHHHHH
Confidence            4699999999999999998874

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=83.13  E-value=0.54  Score=46.05  Aligned_cols=24  Identities=33%  Similarity=0.347  Sum_probs=20.7

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHhc
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .-+++=|+|.+|.|||+||+++.+
T Consensus      1081 ~g~~~l~~G~~g~GKT~la~~~~~ 1104 (1706)
T 3cmw_A         1081 MGRIVEIYGPESSGKTTLTLQVIA 1104 (1706)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCChHHHHHHHHH
Confidence            346788999999999999998764

>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*

Probab=83.05  E-value=0.64  Score=39.88  Aligned_cols=19  Identities=37%  Similarity=0.653  Sum_probs=16.9

Q ss_pred             CEEEEEecCCCCcHHHHHH
Q 037814          204 PRIISLVGMGGIGKTTLAQ  222 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~  222 (229)
                      =.++.+.|..|.|||||+.
T Consensus       241 g~~~lffGlSGtGKTTLs~  259 (540)
T 2olr_A          241 GDVAVFFGLSGTGKTTLST  259 (540)
T ss_dssp             SCEEEEECSTTSSHHHHHC
T ss_pred             CCEEEEEccCCCCHHHHhc
Confidence            3689999999999999973

>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A

Probab=82.97  E-value=0.64  Score=39.91  Aligned_cols=18  Identities=39%  Similarity=0.647  Sum_probs=16.4

Q ss_pred             EEEEEecCCCCcHHHHHH
Q 037814          205 RIISLVGMGGIGKTTLAQ  222 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~  222 (229)
                      .++.+.|..|.|||||+.
T Consensus       236 ~~~~ffGlSGtGKTTLs~  253 (532)
T 1ytm_A          236 NTAIFFGLSGTGKTTLST  253 (532)
T ss_dssp             SEEEEECCTTSSHHHHHC
T ss_pred             eEEEEEecCCCCHHHHhh
Confidence            599999999999999983

>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A

Probab=82.95  E-value=0.72  Score=41.85  Aligned_cols=20  Identities=25%  Similarity=0.282  Sum_probs=16.4

Q ss_pred             EEEEEecCCCCcHHHHHHHH
Q 037814          205 RIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      .+.-|.|.+|.||||++..+
T Consensus       372 ~~~lI~GppGTGKT~ti~~~  391 (800)
T 2wjy_A          372 PLSLIQGPPGTGKTVTSATI  391 (800)
T ss_dssp             SEEEEECCTTSCHHHHHHHH
T ss_pred             CeEEEEcCCCCCHHHHHHHH
Confidence            36779999999999876654

>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1

Probab=82.82  E-value=0.65  Score=39.79  Aligned_cols=19  Identities=37%  Similarity=0.653  Sum_probs=16.9

Q ss_pred             CEEEEEecCCCCcHHHHHH
Q 037814          204 PRIISLVGMGGIGKTTLAQ  222 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~  222 (229)
                      =.++.+.|..|.|||||+.
T Consensus       213 g~~~~ffGlSGtGKTTLs~  231 (524)
T 1ii2_A          213 GDVTVFFGLSGTGKTTLSA  231 (524)
T ss_dssp             CCEEEEECCTTSSHHHHHC
T ss_pred             CCEEEEEccCCcchhhhhh
Confidence            3599999999999999974

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=82.70  E-value=0.73  Score=39.51  Aligned_cols=21  Identities=14%  Similarity=0.127  Sum_probs=18.2

Q ss_pred             CEEEEEecCCCCcHHHHHHHH
Q 037814          204 PRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      -.-+.|.|..|.||||+++.+
T Consensus       167 ~pHlLIaG~TGSGKSt~L~~l  187 (512)
T 2ius_A          167 MPHLLVAGTTGSGASVGVNAM  187 (512)
T ss_dssp             SCSEEEECCTTSSHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHH
Confidence            357899999999999998875

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=81.89  E-value=1.1  Score=39.00  Aligned_cols=21  Identities=48%  Similarity=0.748  Sum_probs=16.2

Q ss_pred             CEEEEEecCCCCcHHHHHHHH
Q 037814          204 PRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      -.++-+.|.||+||||+|-.+
T Consensus       327 ~~~~~~~~~~g~Gktt~a~~l  347 (589)
T 1ihu_A          327 HGLIMLMGKGGVGKTTMAAAI  347 (589)
T ss_dssp             CEEEEEECSTTSSHHHHHHHH
T ss_pred             CeEEEEecCCCCChhhHHHHH
Confidence            356666889999999997553

>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, T thermophilus; 2.00A {Thermus thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A*

Probab=81.38  E-value=0.62  Score=39.95  Aligned_cols=18  Identities=39%  Similarity=0.719  Sum_probs=16.3

Q ss_pred             EEEEEecCCCCcHHHHHH
Q 037814          205 RIISLVGMGGIGKTTLAQ  222 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~  222 (229)
                      .++.+.|..|.|||||+.
T Consensus       226 ~~~~ffGlSGtGKTtLs~  243 (529)
T 1j3b_A          226 DVAVFFGLSGTGKTTLST  243 (529)
T ss_dssp             CEEEEEECTTSCHHHHTC
T ss_pred             cEEEEEccccCChhhHhh
Confidence            688999999999999984

>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*

Probab=81.37  E-value=0.83  Score=38.07  Aligned_cols=21  Identities=33%  Similarity=0.504  Sum_probs=17.8

Q ss_pred             CEEEEEecCCCCcHHHHHHHH
Q 037814          204 PRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      ..-+.|+|..|+|||++++.+
T Consensus        53 ~~h~~i~G~tGsGKs~~~~~l   73 (437)
T 1e9r_A           53 PRHLLVNGATGTGKSVLLREL   73 (437)
T ss_dssp             GGCEEEEECTTSSHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHH
Confidence            357889999999999998664

>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}

Probab=81.18  E-value=0.82  Score=39.02  Aligned_cols=23  Identities=26%  Similarity=0.306  Sum_probs=18.6

Q ss_pred             EEEEEecCCCCcHHHHH-HHHhcC
Q 037814          205 RIISLVGMGGIGKTTLA-QFAYNN  227 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa-~~vy~d  227 (229)
                      .-++|+|-.|+|||||| ..|.|.
T Consensus       176 QR~~I~g~~g~GKT~Lal~~I~~~  199 (515)
T 2r9v_A          176 QRELIIGDRQTGKTAIAIDTIINQ  199 (515)
T ss_dssp             CBEEEEEETTSSHHHHHHHHHHTT
T ss_pred             CEEEEEcCCCCCccHHHHHHHHHh
Confidence            46889999999999994 566653

>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B

Probab=81.01  E-value=0.8  Score=39.00  Aligned_cols=22  Identities=32%  Similarity=0.338  Sum_probs=18.0

Q ss_pred             EEEEEecCCCCcHHHHH-HHHhc
Q 037814          205 RIISLVGMGGIGKTTLA-QFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa-~~vy~  226 (229)
                      .-++|+|-.|+|||+|| ..|.|
T Consensus       163 QR~~Ifg~~g~GKT~Lal~~I~~  185 (502)
T 2qe7_A          163 QRELIIGDRQTGKTTIAIDTIIN  185 (502)
T ss_dssp             CBCEEEECSSSCHHHHHHHHHHG
T ss_pred             CEEEEECCCCCCchHHHHHHHHH
Confidence            46789999999999994 56655

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=80.95  E-value=0.82  Score=45.53  Aligned_cols=23  Identities=35%  Similarity=0.366  Sum_probs=20.2

Q ss_pred             CCEEEEEecCCCCcHHHHHHHHh
Q 037814          203 GPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .-.++-|+|.+|+||||||.++.
T Consensus       382 ~G~lilI~G~pGsGKTtLaLqia  404 (2050)
T 3cmu_A          382 MGRIVEIYGPESSGKTTLTLQVI  404 (2050)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHH
Confidence            35799999999999999998874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	229
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	4e-12

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 61.8 bits (149), Expect = 4e-12
 Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 160 SNERADQRVPSISSIDESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTT 219
           S +  D+++   +   +   + RE   + ++ +L      +      + L G  G GK+ 
Sbjct: 3   SRQMLDRKLLLGNVPKQMTCYIREYHVDRVIKKLDEMCDLDS---FFLFLHGRAGSGKSV 59

Query: 220 LAQFAYNNDD 229
           +A  A +  D
Sbjct: 60  IASQALSKSD 69

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	229
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.48
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	98.38
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	98.24
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	98.02
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	98.0
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.98
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.91
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.87
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.84
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.84
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.84
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.62
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.03
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.03
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.91
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.9
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.9
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.87
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.83
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.74
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	96.72
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.72
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.71
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.71
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.29
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.25
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.98
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	95.97
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	95.64
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.37
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.35
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	94.91
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	94.77
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.66
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	93.84
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	93.68
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	93.26
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	92.88
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	92.84
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	92.47
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	92.12
d1tuea_	205	Replication protein E1 helicase domain {Human papi	92.07
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	91.7
d1xpua3	289	Transcription termination factor Rho, ATPase domai	91.59
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	91.42
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	90.96
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	90.37
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	90.0
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	89.6
d1o5za2	296	Folylpolyglutamate synthetase {Thermotoga maritima	88.2
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	88.15
d2gc6a2	296	Folylpolyglutamate synthetase {Lactobacillus casei	86.27
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	85.13
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	82.51
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	82.3
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	80.32

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.48  E-value=1.2e-14  Score=114.23  Aligned_cols=50  Identities=20%  Similarity=0.257  Sum_probs=43.9

Q ss_pred             CCCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          175 DESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       175 ~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .++.+|||+.++++|+++|....+   ++..+|+||||||+||||||++|||+
T Consensus        18 ~~~~~~gR~~~~~~i~~~L~~~~~---~~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          18 KQMTCYIREYHVDRVIKKLDEMCD---LDSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHTT---SSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCceeCcHHHHHHHHHHHHhccC---CCceEEEEECCCCCCHHHHHHHHHHh
Confidence            456789999999999999986543   56899999999999999999999986

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.38  E-value=1.2e-07  Score=72.60  Aligned_cols=53  Identities=19%  Similarity=0.083  Sum_probs=40.0

Q ss_pred             CCCCcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          174 IDESEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       174 ~~~~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +.+..++||+.+.+.|.++|...-.........+-|+|.+|+||||+|+.+.+
T Consensus        13 y~p~~l~~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          13 YVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             CCCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHH
Confidence            33346899999999999998642100114466788999999999999999875

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.24  E-value=4.1e-07  Score=69.94  Aligned_cols=52  Identities=31%  Similarity=0.302  Sum_probs=38.3

Q ss_pred             CCCCcceechhhHHHHHHHhhc----CCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          174 IDESEIFGREKEKNELVNRLLC----ESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       174 ~~~~~~vG~~~~~~~l~~~L~~----~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +.+..++||+.+.+.|.++|..    +.. .++...++-|+|.+|+||||+++.+.+
T Consensus        13 ~~P~~~~~Re~e~~~l~~~l~~~~~~~~~-~~~~~~~l~l~GppGtGKT~l~~~l~~   68 (287)
T d1w5sa2          13 YIPPELRVRRGEAEALARIYLNRLLSGAG-LSDVNMIYGSIGRVGIGKTTLAKFTVK   68 (287)
T ss_dssp             CCCSSCSSSCHHHHHHHHHHHHHHHTSSC-BCCEEEEEECTTCCSSSHHHHHHHHHH
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHHHcCCC-CCCcceEEEeECCCCCCHHHHHHHHHH
Confidence            4456799999999999887632    221 112344567789999999999999875

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=3.2e-06  Score=61.41  Aligned_cols=42  Identities=24%  Similarity=0.363  Sum_probs=34.5

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .++||+.+.+++++.|....      -.=+-+||-+|||||+|++.+.
T Consensus        23 ~~igRd~Ei~~l~~iL~r~~------k~n~lLvG~pGVGKTalv~~LA   64 (195)
T d1jbka_          23 PVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLA   64 (195)
T ss_dssp             CCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSCHHHHHHHHH
T ss_pred             CCcCcHHHHHHHHHHHhccC------CCCeEEEecCCcccHHHHHHHH
Confidence            47999999999999997644      2345699999999999987653

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=98.00  E-value=2.3e-06  Score=64.46  Aligned_cols=48  Identities=31%  Similarity=0.401  Sum_probs=36.0

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ++||-+.-++.|..|+...... ...+.-+-++|.+|+||||||+.+.+
T Consensus        10 divGq~~~~~~L~~~i~~~~~~-~~~~~~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          10 EYIGQERLKQKLRVYLEAAKAR-KEPLEHLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             GSCSCHHHHHHHHHHHHHHTTS-SSCCCCEEEECCTTSCHHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCCHHHHHHHHHH
Confidence            6899999999998887542210 12244455999999999999999875

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=3.7e-06  Score=64.34  Aligned_cols=42  Identities=33%  Similarity=0.404  Sum_probs=34.1

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .++||+++.++|++.|....      -.-+-+||.+|||||+|+..+.
T Consensus        19 ~~igRd~Ei~~l~~iL~r~~------k~n~lLVG~~GvGKTalv~~la   60 (268)
T d1r6bx2          19 PLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLA   60 (268)
T ss_dssp             CCCSCHHHHHHHHHHHTSSS------SCEEEEECCTTSSHHHHHHHHH
T ss_pred             cccChHHHHHHHHHHHhcCc------cCCcEEECCCCCcHHHHHHHHH
Confidence            48999999999999997543      1334499999999999887654

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.91  E-value=2.3e-06  Score=64.37  Aligned_cols=49  Identities=31%  Similarity=0.359  Sum_probs=36.5

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|.+..++.|..||...... .....-+-++|.+|+||||||+.+.+
T Consensus         9 ~divGqe~~~~~l~~~i~~~~~~-~~~~~~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2           9 DEFIGQENVKKKLSLALEAAKMR-GEVLDHVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHHH-TCCCCCEEEESSTTSSHHHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHHHHHhc-CCCCCeEEEECCCCCcHHHHHHHHHh
Confidence            46899999999999998532110 02233456999999999999999865

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.87  E-value=6.2e-06  Score=61.63  Aligned_cols=44  Identities=27%  Similarity=0.284  Sum_probs=36.9

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|-+.-++.|..||..+.      ..-+-++|..|+||||||+.+-+
T Consensus        24 ~diig~~~~~~~l~~~i~~~~------~~~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          24 DDIVGQEHIVKRLKHYVKTGS------MPHLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             TTCCSCHHHHHHHHHHHHHTC------CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             HHccCcHHHHHHHHHHHHcCC------CCeEEEECCCCCcHHHHHHHHHH
Confidence            469999999999999997654      34467999999999999998743

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.84  E-value=6e-06  Score=61.51  Aligned_cols=44  Identities=16%  Similarity=0.154  Sum_probs=36.3

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|-++.++.|..|+..+.      +..+=++|..|+||||||+.+.+
T Consensus        14 ~divg~~~~~~~L~~~i~~~~------~~~lLl~Gp~G~GKttl~~~la~   57 (227)
T d1sxjc2          14 DEVYGQNEVITTVRKFVDEGK------LPHLLFYGPPGTGKTSTIVALAR   57 (227)
T ss_dssp             GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSSSSSHHHHHHHHHH
T ss_pred             HHccCcHHHHHHHHHHHHcCC------CCeEEEECCCCCChhHHHHHHHH
Confidence            469999999999999997654      22355999999999999998864

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.84  E-value=6.3e-06  Score=61.34  Aligned_cols=43  Identities=28%  Similarity=0.310  Sum_probs=35.7

Q ss_pred             CcceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          177 SEIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+++|-+..++.|..|+.++.      +.-+-++|..|+||||+|+.+.
T Consensus        15 ~d~ig~~~~~~~L~~~~~~~~------~~~~ll~Gp~G~GKTt~a~~la   57 (224)
T d1sxjb2          15 SDIVGNKETIDRLQQIAKDGN------MPHMIISGMPGIGKTTSVHCLA   57 (224)
T ss_dssp             GGCCSCTHHHHHHHHHHHSCC------CCCEEEECSTTSSHHHHHHHHH
T ss_pred             HHhcCCHHHHHHHHHHHHcCC------CCeEEEECCCCCCchhhHHHHH
Confidence            468999999999999997665      2335689999999999998764

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.84  E-value=6.7e-06  Score=62.18  Aligned_cols=51  Identities=27%  Similarity=0.265  Sum_probs=39.3

Q ss_pred             CcceechhhHHHHHHHhhcCC-----------CCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          177 SEIFGREKEKNELVNRLLCES-----------SEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~~~~-----------~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .+++|.+..+++|.+||..-.           .......+.+-++|..|+||||+|+.+.+.
T Consensus        14 ~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          14 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999985410           001234567889999999999999998764

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.62  E-value=1.9e-05  Score=63.51  Aligned_cols=39  Identities=28%  Similarity=0.541  Sum_probs=31.7

Q ss_pred             cceechhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHH
Q 037814          178 EIFGREKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQ  222 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~  222 (229)
                      .++||+.+.+++++.|.....      .-+-+||.+|||||+|+.
T Consensus        23 ~~~gr~~ei~~~~~~L~r~~k------~n~llvG~~GvGKtaiv~   61 (387)
T d1qvra2          23 PVIGRDEEIRRVIQILLRRTK------NNPVLIGEPGVGKTAIVE   61 (387)
T ss_dssp             CCCSCHHHHHHHHHHHHCSSC------CCCEEEECTTSCHHHHHH
T ss_pred             CCcCcHHHHHHHHHHHhcCCC------CCCeEECCCCCCHHHHHH
Confidence            379999999999999975542      234678999999999774

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.03  E-value=0.00046  Score=51.80  Aligned_cols=49  Identities=20%  Similarity=0.113  Sum_probs=34.1

Q ss_pred             CcceechhhHHHHHHHhh------cCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          177 SEIFGREKEKNELVNRLL------CESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L~------~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ..++|..++.+.+++-+.      ...  .....+-|-++|..|+|||+||+.|.+.
T Consensus         9 ~~~i~~~~~i~~i~~~~~~~~~~~~~~--~~~p~~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_           9 NGIIKWGDPVTRVLDDGELLVQQTKNS--DRTPLVSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             TCCCCCSHHHHHHHHHHHHHHHHHHHC--SSCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCcCcCHHHHHHHHHHHHHHHHHhcc--CCCCCeEEEEECcCCCCHHHHHHHHhhc
Confidence            458888777776665543      111  1133566779999999999999998753

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.03  E-value=0.00022  Score=53.92  Aligned_cols=50  Identities=30%  Similarity=0.355  Sum_probs=34.3

Q ss_pred             CcceechhhHHHHHHH---hhcCC-CC--CCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          177 SEIFGREKEKNELVNR---LLCES-SE--ERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~---L~~~~-~~--~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .+++|.++.+++|.+.   +...+ ..  .....+-+-++|.+|+|||+||+.+.+
T Consensus        12 ~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHH
T ss_pred             HHHhchHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHH
Confidence            5799999888888654   32211 00  012245567999999999999999865

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.91  E-value=0.00053  Score=51.48  Aligned_cols=51  Identities=31%  Similarity=0.399  Sum_probs=34.4

Q ss_pred             CcceechhhHHHHHHHh---hcCC---CCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          177 SEIFGREKEKNELVNRL---LCES---SEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       177 ~~~vG~~~~~~~l~~~L---~~~~---~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .+++|.++.++.|.+.+   ...+   .-.....+-|-++|..|+|||+||+.+.+.
T Consensus         9 ~di~G~~~~k~~l~~~i~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_           9 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHH
Confidence            36899998887765543   2211   000122455789999999999999998753

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=0.00085  Score=52.21  Aligned_cols=47  Identities=23%  Similarity=0.340  Sum_probs=34.4

Q ss_pred             cceechhhHHHHHHHhh---cCCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814          178 EIFGREKEKNELVNRLL---CESSEERKGPRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~---~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      .++|-+..++.|...+.   .+-.+.+....++-.+|..|+|||.||+.+
T Consensus        23 ~viGQ~~a~~~v~~~v~~~~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~l   72 (315)
T d1r6bx3          23 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQL   72 (315)
T ss_dssp             TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHH
T ss_pred             eecChHHHHHHHHHHHHHHHccCCCCCCCceEEEEECCCcchhHHHHHHH
Confidence            57888888888766552   111112255778999999999999999986

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.90  E-value=0.00015  Score=56.48  Aligned_cols=49  Identities=27%  Similarity=0.392  Sum_probs=32.2

Q ss_pred             cceechhhHHHHHHHhhc--------CCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          178 EIFGREKEKNELVNRLLC--------ESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~--------~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .++|-++.++.|...+..        .........+-+-++|.+|+|||.||+.+.+
T Consensus        15 ~ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          15 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhh
Confidence            478888888777654410        0000001345667999999999999998854

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.87  E-value=0.00065  Score=53.06  Aligned_cols=36  Identities=19%  Similarity=0.344  Sum_probs=26.6

Q ss_pred             HHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          186 KNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       186 ~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      ...|++.+....    .+..+|+|.|.+|+|||||.-.+.
T Consensus        37 ~~~~~~~~~~~~----~~~~~igitG~pGaGKSTli~~l~   72 (323)
T d2qm8a1          37 VRDLIDAVLPQT----GRAIRVGITGVPGVGKSTTIDALG   72 (323)
T ss_dssp             HHHHHHHHGGGC----CCSEEEEEECCTTSCHHHHHHHHH
T ss_pred             HHHHHHHhhhcc----CCceEEeeeCCCCCCHHHHHHHHH
Confidence            344454444433    568999999999999999987764

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.83  E-value=0.00072  Score=52.33  Aligned_cols=24  Identities=38%  Similarity=0.504  Sum_probs=22.0

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      +..-||+|.|..|+||||+|+.+.
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHH
Confidence            668999999999999999999874

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.74  E-value=0.00087  Score=49.09  Aligned_cols=47  Identities=28%  Similarity=0.159  Sum_probs=30.3

Q ss_pred             CcceechhhH--HHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          177 SEIFGREKEK--NELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       177 ~~~vG~~~~~--~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      +-++|-.+..  ..+.++.....    .....+-|||..|+|||.|++.+++.
T Consensus        11 nF~vg~~N~~a~~~~~~~~~~~~----~~~n~l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          11 NFIVGEGNRLAYEVVKEALENLG----SLYNPIFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             SCCCCTTTHHHHHHHHHHHHTTT----TSCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred             hccCCCcHHHHHHHHHHHHhCcC----CCCCcEEEECCCCCcHHHHHHHHHHH
Confidence            3456754443  33444443322    22344679999999999999998874

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.72  E-value=0.00039  Score=53.25  Aligned_cols=23  Identities=26%  Similarity=0.495  Sum_probs=20.4

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      =.+++|+|..|+|||||++.+.-
T Consensus        62 Ge~vaivG~nGsGKSTLl~~i~G   84 (281)
T d1r0wa_          62 GEMLAITGSTGSGKTSLLMLILG   84 (281)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCChHHHHHHHHhC
Confidence            36899999999999999999863

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.72  E-value=0.00038  Score=52.50  Aligned_cols=21  Identities=38%  Similarity=0.672  Sum_probs=19.5

Q ss_pred             EEEEEecCCCCcHHHHHHHHh
Q 037814          205 RIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+++|||..|+|||||++.+.
T Consensus        42 e~iaivG~sGsGKSTLl~ll~   62 (253)
T d3b60a1          42 KTVALVGRSGSGKSTIASLIT   62 (253)
T ss_dssp             CEEEEEECTTSSHHHHHHHHT
T ss_pred             CEEEEECCCCChHHHHHHHHh
Confidence            589999999999999999874

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.00041  Score=52.20  Aligned_cols=22  Identities=36%  Similarity=0.548  Sum_probs=20.0

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      =.+++|+|..|+|||||++.+.
T Consensus        40 Ge~vaivG~sGsGKSTLl~li~   61 (251)
T d1jj7a_          40 GEVTALVGPNGSGKSTVAALLQ   61 (251)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHh
Confidence            3699999999999999999875

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.00094  Score=52.20  Aligned_cols=24  Identities=21%  Similarity=0.247  Sum_probs=21.2

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+..+|+|.|.+|+|||||...+-
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~   75 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFG   75 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHH
Confidence            568999999999999999997753

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.29  E-value=0.003  Score=48.96  Aligned_cols=47  Identities=17%  Similarity=0.309  Sum_probs=32.4

Q ss_pred             cceechhhHHHHHHHhhc---CCCCCCCCCEEEEEecCCCCcHHHHHHHH
Q 037814          178 EIFGREKEKNELVNRLLC---ESSEERKGPRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       178 ~~vG~~~~~~~l~~~L~~---~~~~~~~~~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      .++|-+..++.|...+..   +-.+......++..+|..|+|||.||+.+
T Consensus        24 ~v~GQ~~ai~~v~~~i~~~~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~l   73 (315)
T d1qvra3          24 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTL   73 (315)
T ss_dssp             HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHH
T ss_pred             eEeCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCcchHHHHHHHH
Confidence            467777777777554421   11112355778999999999999999975

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.25  E-value=0.00068  Score=51.06  Aligned_cols=22  Identities=36%  Similarity=0.561  Sum_probs=19.6

Q ss_pred             CEEEEEecCCCCcHHHHHHHHh
Q 037814          204 PRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      =..++|+|..|+|||||++.+.
T Consensus        44 Ge~vaivG~sGsGKSTLl~ll~   65 (255)
T d2hyda1          44 GETVAFVGMSGGGKSTLINLIP   65 (255)
T ss_dssp             TCEEEEECSTTSSHHHHHTTTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHH
Confidence            3689999999999999998764

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.98  E-value=0.0029  Score=50.05  Aligned_cols=25  Identities=32%  Similarity=0.195  Sum_probs=21.8

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ++-+.+-++|.+|+|||++|+.+.+
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHH
Confidence            5567899999999999999998764

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.97  E-value=0.0038  Score=45.82  Aligned_cols=35  Identities=26%  Similarity=0.397  Sum_probs=27.4

Q ss_pred             hhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhcC
Q 037814          184 KEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       184 ~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      ..++.|.++|.+         +...++|..|||||||...+..+
T Consensus        84 ~g~~~L~~~l~~---------kt~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          84 MGIEELKEYLKG---------KISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             TTHHHHHHHHSS---------SEEEEECSTTSSHHHHHHHHSTT
T ss_pred             hhHhhHHHHhcC---------CeEEEECCCCCCHHHHHHhhcch
Confidence            346788887732         46789999999999999988654

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=95.64  E-value=0.0061  Score=42.09  Aligned_cols=23  Identities=35%  Similarity=0.351  Sum_probs=20.7

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      -.||.+.|-=|+||||++|.+.+
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~   55 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQ   55 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEecCCCccHHHHHHHHHh
Confidence            46999999999999999998764

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.0087  Score=44.01  Aligned_cols=24  Identities=25%  Similarity=0.191  Sum_probs=21.3

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      +.=+++-|+|.+|+|||+||.++.
T Consensus        35 p~G~~~~i~G~~GsGKT~lalq~~   58 (258)
T d1v5wa_          35 ESMAITEAFGEFRTGKTQLSHTLC   58 (258)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHH
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHH
Confidence            556899999999999999998774

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.35  E-value=0.0063  Score=44.86  Aligned_cols=24  Identities=33%  Similarity=0.325  Sum_probs=20.7

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      +.=+++-|+|.+|+|||||+-++-
T Consensus        34 p~G~~~li~G~pGsGKT~~~lq~~   57 (254)
T d1pzna2          34 ETQAITEVFGEFGSGKTQLAHTLA   57 (254)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHH
T ss_pred             cCCEEEEEEcCCCCCHHHHHHHHH
Confidence            446899999999999999998763

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.91  E-value=0.0081  Score=45.00  Aligned_cols=22  Identities=45%  Similarity=0.466  Sum_probs=19.2

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +-|-++|.+|+|||+||+.+.+
T Consensus        39 ~giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHH
Confidence            4567999999999999999865

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.77  E-value=0.0085  Score=45.08  Aligned_cols=24  Identities=33%  Similarity=0.375  Sum_probs=20.2

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhcC
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      .+-|-++|..|+|||+||+.|.+.
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcchhHHHHHHHH
Confidence            455669999999999999998753

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.66  E-value=0.01  Score=45.92  Aligned_cols=23  Identities=26%  Similarity=0.385  Sum_probs=18.9

Q ss_pred             CEEEEEecCCCCcHHHHHHHHhc
Q 037814          204 PRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       204 ~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      -.++-++|.+|+|||.||+.+-.
T Consensus       123 ~g~~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         123 SGMVIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             SEEEEEECSSSSCHHHHHHHHHH
T ss_pred             CceEEEECCCCccHHHHHHHHHH
Confidence            35666789999999999998743

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=93.84  E-value=0.022  Score=44.04  Aligned_cols=21  Identities=29%  Similarity=0.314  Sum_probs=18.4

Q ss_pred             EEEEecCCCCcHHHHHHHHhc
Q 037814          206 IISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       206 Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      -|-|.|..|+|||||++.+.+
T Consensus       168 nili~G~tgSGKTT~l~al~~  188 (323)
T d1g6oa_         168 NVIVCGGTGSGKTTYIKSIME  188 (323)
T ss_dssp             CEEEEESTTSSHHHHHHHHGG
T ss_pred             CEEEEeeccccchHHHHHHhh
Confidence            378899999999999998764

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=93.68  E-value=0.027  Score=44.24  Aligned_cols=22  Identities=41%  Similarity=0.443  Sum_probs=19.0

Q ss_pred             CCEEEEEecCCCCcHHHHHHHH
Q 037814          203 GPRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      ...-+-.+|..|||||-||+.+
T Consensus        67 p~~niLfiGPTGvGKTElAk~L   88 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTL   88 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHH
T ss_pred             CCcceeeeCCCCccHHHHHHHH
Confidence            4566888999999999999975

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=93.26  E-value=0.0095  Score=43.77  Aligned_cols=22  Identities=23%  Similarity=0.409  Sum_probs=18.0

Q ss_pred             EEEEecCCCCcHHHHHHHHhcC
Q 037814          206 IISLVGMGGIGKTTLAQFAYNN  227 (229)
Q Consensus       206 Vi~IvG~gGvGKTTLa~~vy~d  227 (229)
                      +..++|..|||||||...+..+
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-
T ss_pred             eEEEECCCCccHHHHHHhhccH
Confidence            4458999999999999987654

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=92.88  E-value=0.026  Score=45.57  Aligned_cols=20  Identities=35%  Similarity=0.502  Sum_probs=17.2

Q ss_pred             EEEEecCCCCcHHHHHHHHh
Q 037814          206 IISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       206 Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      =|-++|..|+|||-||+.+-
T Consensus        51 NILliGPTGvGKTlLAr~LA   70 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLA   70 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            46689999999999999873

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=92.84  E-value=0.034  Score=41.75  Aligned_cols=27  Identities=19%  Similarity=0.283  Sum_probs=22.2

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHhcCC
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAYNND  228 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy~d~  228 (229)
                      ...--|+|||++.|||+||+..+.+..
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~~~  136 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAKKN  136 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCceEEEEEecCccchhhhhhhhhccc
Confidence            345569999999999999999887643

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=92.47  E-value=0.081  Score=39.54  Aligned_cols=34  Identities=21%  Similarity=0.126  Sum_probs=25.8

Q ss_pred             HHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          188 ELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       188 ~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      .+..||....    ++-..+-++|.|+.||||++..+.
T Consensus        92 ~l~~~L~~~~----~k~n~~~l~G~~~tGKS~f~~~i~  125 (267)
T d1u0ja_          92 VFLGWATKKF----GKRNTIWLFGPATTGKTNIAEAIA  125 (267)
T ss_dssp             HHHHHHTTCS----TTCCEEEEECSTTSSHHHHHHHHH
T ss_pred             HHHHHHcCCC----CccEEEEEEcCCCCCHHHHHHHHH
Confidence            4455565443    557788899999999999998875

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.12  E-value=0.046  Score=43.49  Aligned_cols=22  Identities=18%  Similarity=0.292  Sum_probs=19.5

Q ss_pred             EEEEEecCCCCcHHHHHHHHhc
Q 037814          205 RIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      --|+|+|..|+|||||...+..
T Consensus        57 l~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          57 LNVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            4589999999999999998864

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=92.07  E-value=0.073  Score=37.94  Aligned_cols=35  Identities=14%  Similarity=0.082  Sum_probs=26.7

Q ss_pred             HHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          186 KNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       186 ~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      +..+..||...     ++-.-+.|+|.++.|||++|..+.
T Consensus        40 l~~l~~~l~~~-----PKkn~i~~~GP~~TGKS~f~~sl~   74 (205)
T d1tuea_          40 LGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFI   74 (205)
T ss_dssp             HHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHH
T ss_pred             HHHHHHHHcCC-----CCceEEEEECCCCccHHHHHHHHH
Confidence            45566666432     566889999999999999998764

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=91.70  E-value=0.052  Score=40.46  Aligned_cols=20  Identities=25%  Similarity=0.483  Sum_probs=17.4

Q ss_pred             EEEEEecCCCCcHHHHHHHH
Q 037814          205 RIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      .++.|.|.+|+|||||+..+
T Consensus        36 ~l~vi~G~~G~GKT~~~~~l   55 (277)
T d1cr2a_          36 EVIMVTSGSGMGKSTFVRQQ   55 (277)
T ss_dssp             CEEEEECSTTSSHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHH
Confidence            57889999999999998765

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=91.59  E-value=0.04  Score=41.68  Aligned_cols=34  Identities=18%  Similarity=-0.019  Sum_probs=26.0

Q ss_pred             HHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          188 ELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       188 ~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      ++++.|.--.     .=.-++|+|-.|+|||||+..+.+
T Consensus        32 r~ID~l~Pig-----rGQr~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          32 RVLDLASPIG-----RGQRGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             HHHHHHSCCB-----TTCEEEEEECSSSSHHHHHHHHHH
T ss_pred             eeeeeccccc-----CCCeeeEeCCCCCCHHHHHHHHHH
Confidence            6788775432     125789999999999999988764

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=91.42  E-value=0.053  Score=42.46  Aligned_cols=32  Identities=31%  Similarity=0.245  Sum_probs=23.0

Q ss_pred             hhhHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHH
Q 037814          183 EKEKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQF  223 (229)
Q Consensus       183 ~~~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~  223 (229)
                      +..+..+...|.         -++.-|.|.+|.||||++..
T Consensus       151 ~~Q~~A~~~al~---------~~~~vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         151 NWQKVAAAVALT---------RRISVISGGPGTGKTTTVAK  182 (359)
T ss_dssp             CHHHHHHHHHHT---------BSEEEEECCTTSTHHHHHHH
T ss_pred             cHHHHHHHHHHc---------CCeEEEEcCCCCCceehHHH
Confidence            445556665553         15888899999999998744

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=90.96  E-value=0.085  Score=39.45  Aligned_cols=24  Identities=38%  Similarity=0.300  Sum_probs=20.6

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      +.-+++-|+|..|+||||||-++.
T Consensus        55 p~g~itei~G~~~sGKT~l~l~~~   78 (268)
T d1xp8a1          55 PRGRITEIYGPESGGKTTLALAIV   78 (268)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             cCceEEEEecCCccchHHHHHHHH
Confidence            345799999999999999998764

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=90.37  E-value=0.08  Score=39.47  Aligned_cols=24  Identities=33%  Similarity=0.343  Sum_probs=20.5

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      +.=+|+-|+|..|+|||||+-++.
T Consensus        52 ~~g~itei~G~~gsGKTtl~l~~~   75 (263)
T d1u94a1          52 PMGRIVEIYGPESSGKTTLTLQVI   75 (263)
T ss_dssp             ETTSEEEEECSTTSSHHHHHHHHH
T ss_pred             cCceEEEEecCCCcHHHHHHHHHH
Confidence            345799999999999999998765

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.00  E-value=0.16  Score=37.82  Aligned_cols=24  Identities=38%  Similarity=0.433  Sum_probs=20.9

Q ss_pred             CCCEEEEEecCCCCcHHHHHHHHh
Q 037814          202 KGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       202 ~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      +.=+++-|+|..|+||||||-+++
T Consensus        58 ~~g~i~e~~G~~~~GKT~l~l~~~   81 (269)
T d1mo6a1          58 PRGRVIEIYGPESSGKTTVALHAV   81 (269)
T ss_dssp             CSSSEEEEECSSSSSHHHHHHHHH
T ss_pred             ccceeEEEecCCCcHHHHHHHHHH
Confidence            557899999999999999997654

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=89.60  E-value=0.22  Score=39.35  Aligned_cols=40  Identities=20%  Similarity=0.267  Sum_probs=27.7

Q ss_pred             eechh-hHHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          180 FGREK-EKNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       180 vG~~~-~~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      .|... ..+.+.+++ ...      -.+|-|.|.-|.||||....+.+
T Consensus       140 LG~~~~~~~~l~~l~-~~~------~GliLvtGpTGSGKSTTl~~~l~  180 (401)
T d1p9ra_         140 LGMTAHNHDNFRRLI-KRP------HGIILVTGPTGSGKSTTLYAGLQ  180 (401)
T ss_dssp             SCCCHHHHHHHHHHH-TSS------SEEEEEECSTTSCHHHHHHHHHH
T ss_pred             hcccHHHHHHHHHHH-hhh------hceEEEEcCCCCCccHHHHHHhh
Confidence            56544 444454444 333      48999999999999999887643

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.15  E-value=0.11  Score=38.86  Aligned_cols=33  Identities=36%  Similarity=0.422  Sum_probs=23.7

Q ss_pred             HHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHh
Q 037814          188 ELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAY  225 (229)
Q Consensus       188 ~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy  225 (229)
                      ++++.|.--.    ++ .-++|+|-.|+|||||+..+-
T Consensus        57 raID~l~pig----kG-Qr~~If~~~g~GKt~l~~~i~   89 (276)
T d2jdid3          57 KVVDLLAPYA----KG-GKIGLFGGAGVGKTVLIMELI   89 (276)
T ss_dssp             HHHHHHSCEE----TT-CEEEEEECTTSSHHHHHHHHH
T ss_pred             eeeeeecccc----CC-CEEEeeCCCCCCHHHHHHHHH
Confidence            5666664322    22 348999999999999988774

>d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: Folylpolyglutamate synthetase
domain: Folylpolyglutamate synthetase
species: Lactobacillus casei [TaxId: 1582]

Probab=86.27  E-value=0.34  Score=36.40  Aligned_cols=35  Identities=23%  Similarity=0.207  Sum_probs=25.8

Q ss_pred             HHHHHHHhhcCCCCCCCCCEEEEEecCCCCcHHHHHHHHhc
Q 037814          186 KNELVNRLLCESSEERKGPRIISLVGMGGIGKTTLAQFAYN  226 (229)
Q Consensus       186 ~~~l~~~L~~~~~~~~~~~~Vi~IvG~gGvGKTTLa~~vy~  226 (229)
                      +.++.+.|....    .++++|+|.|-.|  |||-+..+++
T Consensus        25 ~~~~l~~lg~P~----~~lkvI~VTGTNG--KtST~~~i~~   59 (296)
T d2gc6a2          25 ILTLLHALGNPQ----QQGRYIHVTGTNG--KGSAANAIAH   59 (296)
T ss_dssp             HHHHHHHTTCGG----GSSCEEEEECSSS--HHHHHHHHHH
T ss_pred             HHHHHHHcCCch----hhCCEEEEeccCc--HHHHHHHHHH
Confidence            555666664333    6799999998887  9999988753

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=85.13  E-value=0.23  Score=39.23  Aligned_cols=20  Identities=30%  Similarity=0.403  Sum_probs=16.9

Q ss_pred             EEEEEecCCCCcHHHHHHHH
Q 037814          205 RIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      +-+.|+|..|+|||++++.+
T Consensus        51 ~H~~I~G~tGsGKT~~l~~l   70 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLREL   70 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHH
Confidence            45789999999999998654

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.51  E-value=0.49  Score=34.29  Aligned_cols=22  Identities=23%  Similarity=0.279  Sum_probs=19.6

Q ss_pred             CCEEEEEecCCCCcHHHHHHHH
Q 037814          203 GPRIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       203 ~~~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      +-+++-|.|....||||+.|.|
T Consensus        40 ~~~~~iiTGpN~~GKSt~lk~i   61 (234)
T d1wb9a2          40 QRRMLIITGPNMGGKSTYMRQT   61 (234)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHH
T ss_pred             CceEEEEeccCchhhHHHHHHH
Confidence            3478999999999999999986

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.30  E-value=0.31  Score=36.53  Aligned_cols=20  Identities=25%  Similarity=0.242  Sum_probs=17.1

Q ss_pred             EEEEEecCCCCcHHHHHHHH
Q 037814          205 RIISLVGMGGIGKTTLAQFA  224 (229)
Q Consensus       205 ~Vi~IvG~gGvGKTTLa~~v  224 (229)
                      .-++|+|-.|+|||+|+..+
T Consensus        69 Qr~~If~~~g~GKt~ll~~~   88 (285)
T d2jdia3          69 QRELIIGDRQTGKTSIAIDT   88 (285)
T ss_dssp             CBCEEEESTTSSHHHHHHHH
T ss_pred             CEEEeecCCCCChHHHHHHH
Confidence            46789999999999998755

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=80.32  E-value=0.33  Score=36.21  Aligned_cols=18  Identities=28%  Similarity=0.229  Sum_probs=16.0

Q ss_pred             EEEEecCCCCcHHHHHHH
Q 037814          206 IISLVGMGGIGKTTLAQF  223 (229)
Q Consensus       206 Vi~IvG~gGvGKTTLa~~  223 (229)
                      -++|+|-.|+|||+|+..
T Consensus        69 r~~Ifg~~g~GKt~l~~~   86 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATD   86 (276)
T ss_dssp             BCBEEESSSSSHHHHHHH
T ss_pred             eEeeccCCCCChHHHHHH
Confidence            478899999999999975