Citrus Sinensis ID: 037818

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MEDNECREGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYGGLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHcccccccHHHHHHHHccccccccccHHHHHHHHHccccccHHHHHHHHccHHHHHcHHHHHHHHHcccccHHHHHcccccccccccccHHHHHHHHHHHHccHHHHHHHHccccccccccEEEEEccccHHHHHHHHHHccccccEEEcccHHHHHccccccccEEEccccccccccccEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHccEEEEEEcccccccEEEEcHHHHHHcccccccHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEccccccHHHHHHccccccccEEEEEcHHHHccccccccEEEEEcccccccccccEEEccc
Coil and Loop (DISEMBL)
mednecreggkkvrlantplsasQILTRilpsgdgdaENLQRILRLLTSygglsyapymLQHHQDALMSAwplvheavldptiepfvkvhgepaysyygkmpemnglmrkamsgvsvpfITSVldgyngfkGVKQLVDVGGSAGDCLRMILQKHRFICeginfdlpevvgeapsilgvthiggdtfksipaadaIFMKW
Flexible Loop (DISEMBL)
mednecreggkkvrlantplsasqILTRilpsgdgdAENLQRILRLLTSYGGLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW
Low Complexity Region (SEG)
MEDNECREGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYGGLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW
Disordered region (IsUnstruct)
************************ILTRILPSGDGDAENLQRILRLLTSYGGLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIF***
Disordered Region (DISOPRED)
**DNECREGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYGGLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW
Disordered Region (DISEMBL)
***********KVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYGGLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW
Disordered Region (DISPRO)
MEDNECREGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYGGLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEDNECREGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYGGLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	199	2.2.26 [Sep-21-2011]
Q6T1F5	365	Caffeic acid 3-O-methyltr	N/A	no	0.889	0.484	0.408	7e-32
Q9XGV9	361	Caffeic acid 3-O-methyltr	N/A	no	0.894	0.493	0.386	7e-32
Q9XGW0	361	Caffeic acid 3-O-methyltr	N/A	no	0.864	0.476	0.400	1e-31
Q00763	365	Caffeic acid 3-O-methyltr	N/A	no	0.889	0.484	0.389	4e-31
Q43239	354	Caffeic acid 3-O-methyltr	N/A	no	0.924	0.519	0.389	7e-31
Q8LL87	350	Caffeic acid 3-O-methyltr	N/A	no	0.829	0.471	0.438	9e-31
Q9FK25	363	Flavone 3'-O-methyltransf	no	no	0.899	0.493	0.376	9e-31
Q8W013	363	Caffeic acid 3-O-methyltr	N/A	no	0.864	0.473	0.396	9e-31
Q43046	365	Caffeic acid 3-O-methyltr	N/A	no	0.889	0.484	0.384	2e-30
O82054	362	Caffeic acid 3-O-methyltr	N/A	no	0.914	0.502	0.373	5e-30

>sp|Q6T1F5|COMT1_AMMMJ Caffeic acid 3-O-methyltransferase OS=Ammi majus GN=COMT PE=1 SV=1

 Score =  136 bits (343), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 87/213 (40%), Positives = 111/213 (52%), Gaps = 36/213 (16%)

Query: 20  LSASQILTRILPSGDGDAE-NLQRILRLLTSYG--------------------------- 51
           +S SQ L   LPS   D    L RILRLL SY                            
Sbjct: 59  VSPSQ-LAAALPSSQPDTPVMLDRILRLLASYSVLNCKLRDLPDARVERLYGLAPVCKFL 117

Query: 52  -----GLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNG 106
                G+S AP +L +    LM +W  + +AVLD  I PF K +G  A+ Y+GK P  N 
Sbjct: 118 TKNSDGVSMAPLLLMNQDKILMESWYHLKDAVLDGGI-PFNKAYGMTAFEYHGKDPRFNK 176

Query: 107 LMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP 166
           +  + MS  S   +  +L  Y+GF G+K +VDVGG  G  L MI+ K+  + +GINFDLP
Sbjct: 177 VFNQGMSNHSTITMKKILQTYDGFGGLKTVVDVGGGTGATLNMIISKYPNL-KGINFDLP 235

Query: 167 EVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
            VV +APS  GV H+GGD F S+P  DAIFMKW
Sbjct: 236 HVVEDAPSYAGVEHVGGDMFVSVPKGDAIFMKW 268

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.
Ammi majus (taxid: 48026)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 6EC: 8

>sp|Q9XGV9|COMT2_OCIBA Caffeic acid 3-O-methyltransferase 2 OS=Ocimum basilicum GN=COMT2 PE=2 SV=1

 Score =  136 bits (343), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 82/212 (38%), Positives = 110/212 (51%), Gaps = 34/212 (16%)

Query: 20  LSASQILTRILPSGDGDAENLQRILRLLTSYG---------------------------- 51
           +S +++  ++L +       L RILRLLTSY                             
Sbjct: 55  VSPAELAAQLLTTNAEAHVMLDRILRLLTSYAILECRLKTLPDGGVQRLYGLAPVCKFLT 114

Query: 52  ----GLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGL 107
               G+S AP  L +    LM +W  + +AVLD  I PF K +G  A+ Y+G  P  N +
Sbjct: 115 KNEDGVSMAPLALMNQDKVLMESWYHLKDAVLDGGI-PFNKAYGMTAFEYHGTDPRFNKV 173

Query: 108 MRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPE 167
             + MS  S   +  +L+ Y GF G+K +VDVGG  G  L MI+ K+  I +GINFDLP 
Sbjct: 174 FNQGMSNHSTITMKKILETYTGFDGLKTVVDVGGGTGATLNMIISKYPSI-KGINFDLPH 232

Query: 168 VVGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
           VV +APS  GV H+GGD F S+P  DAIFMKW
Sbjct: 233 VVEDAPSYPGVEHVGGDMFVSVPKGDAIFMKW 264

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Ocimum basilicum (taxid: 39350)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q9XGW0|COMT1_OCIBA Caffeic acid 3-O-methyltransferase 1 OS=Ocimum basilicum GN=COMT1 PE=2 SV=1

 Score =  135 bits (341), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/207 (40%), Positives = 108/207 (52%), Gaps = 35/207 (16%)

Query: 26  LTRILPSGDGDAE-NLQRILRLLTSYG--------------------------------G 52
           L   LP+ + DA   L RILRLLTSY                                 G
Sbjct: 60  LAAQLPTTNPDAHVMLDRILRLLTSYAILECRLKTLPDGGVERLYGLAPVCKFLTKNEDG 119

Query: 53  LSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAM 112
           +S AP  L +    LM +W  + +AV+D  I PF K +G  A+ Y+G  P  N +  + M
Sbjct: 120 VSMAPLTLMNQDKVLMESWYHLSDAVVDGGI-PFNKAYGMTAFEYHGTDPRFNKVFNQGM 178

Query: 113 SGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEA 172
           S  S   +  +L+ Y GF G+K +VDVGG  G  L MI+ K+  I +GINFDLP V+ +A
Sbjct: 179 SNHSTITMKKILETYTGFDGLKTVVDVGGGTGATLNMIVSKYPSI-KGINFDLPHVIEDA 237

Query: 173 PSILGVTHIGGDTFKSIPAADAIFMKW 199
           PS  GV H+GGD F S+P  DAIFMKW
Sbjct: 238 PSYPGVEHVGGDMFVSVPKGDAIFMKW 264

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Ocimum basilicum (taxid: 39350)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q00763|COMT1_POPTM Caffeic acid 3-O-methyltransferase 1 OS=Populus tremuloides GN=OMT1 PE=1 SV=1

 Score =  134 bits (337), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 83/213 (38%), Positives = 112/213 (52%), Gaps = 36/213 (16%)

Query: 20  LSASQILTRILPSGDGDAE-NLQRILRLLTSYG--------------------------- 51
           LS S+I +  LP+ + DA   L RILRLL SY                            
Sbjct: 57  LSTSEIASH-LPTKNPDAPVMLDRILRLLASYSILTCSLKDLPDGKVERLYGLAPVCKFL 115

Query: 52  -----GLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNG 106
                G+S +P  L +    LM +W  + +A+LD  I PF K +G  A+ Y+G  P  N 
Sbjct: 116 TKNEDGVSVSPLCLMNQDKVLMESWYYLKDAILDGGI-PFNKAYGMTAFEYHGTDPRFNK 174

Query: 107 LMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP 166
           +  K MS  S   +  +L+ Y GF+G+  LVDVGG  G  +  I+ K+  I +GINFDLP
Sbjct: 175 VFNKGMSDHSTITMKKILETYKGFEGLTSLVDVGGGTGAVVNTIVSKYPSI-KGINFDLP 233

Query: 167 EVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
            V+ +APS  GV H+GGD F S+P ADA+FMKW
Sbjct: 234 HVIEDAPSYPGVEHVGGDMFVSVPKADAVFMKW 266

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Populus tremuloides (taxid: 3693)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q43239|COMT1_ZINEL Caffeic acid 3-O-methyltransferase OS=Zinnia elegans PE=2 SV=1

 Score =  133 bits (335), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 74/190 (38%), Positives = 108/190 (56%), Gaps = 6/190 (3%)

Query: 14  RLANTPLSASQILTRILPSGDGDAEN---LQRILR-LLTSYGGLSYAPYMLQHHQDALMS 69
           R+ +   S S +   +  + DG AE    L  + + L+ +  G+S AP +L +    LM 
Sbjct: 70  RICSLLASYSVLTCTLKETADGCAERFYGLAPVCKFLIKNDAGVSLAPLLLMNQDKVLME 129

Query: 70  AWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNG 129
           +W  + + VLD  I PF K +G  A+ Y+GK    N +    M   S   +  +++ YNG
Sbjct: 130 SWYYLKDPVLDGGI-PFNKAYGMSAFEYHGKDQRFNKVFNSGMFNHSTMTMKKIVELYNG 188

Query: 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFKSI 189
           F G+K LVDVGG  G  L MI  KH+ + +GINFDLP V+ +A +  G+ H+GGD F+S+
Sbjct: 189 FSGLKTLVDVGGGTGASLNMITSKHKSL-KGINFDLPHVIADATTYQGIEHVGGDMFESV 247

Query: 190 PAADAIFMKW 199
           P  DAIFMKW
Sbjct: 248 PKGDAIFMKW 257

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Zinnia elegans (taxid: 34245)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q8LL87|COMT1_COFCA Caffeic acid 3-O-methyltransferase OS=Coffea canephora PE=2 SV=1

 Score =  133 bits (334), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 75/171 (43%), Positives = 101/171 (59%), Gaps = 6/171 (3%)

Query: 33  GDGDAENL---QRILRLLTSYG-GLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVK 88
            DG  E L     + + LT    G+S AP +L +    LM +W  + +AVLD  I PF K
Sbjct: 85  ADGGVERLYGLAPVCKFLTKNADGVSMAPLLLMNQDKVLMESWYHLKDAVLDGGI-PFNK 143

Query: 89  VHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLR 148
            +G  A+ Y+G  P  N +  + MS  S   +  +L+ Y GF+G+K +VDVGG  G  L 
Sbjct: 144 AYGMTAFEYHGTDPRFNKVFNQGMSNHSTITMKKILEVYRGFEGLKTVVDVGGGTGATLN 203

Query: 149 MILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
           MI+ K+  I +GINF+LP VV +APS  GV H+GGD F S+P  DAIFMKW
Sbjct: 204 MIISKYPTI-KGINFELPHVVEDAPSHSGVEHVGGDMFVSVPKGDAIFMKW 253

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Coffea canephora (taxid: 49390)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q9FK25|OMT1_ARATH Flavone 3'-O-methyltransferase 1 OS=Arabidopsis thaliana GN=OMT1 PE=1 SV=1

 Score =  133 bits (334), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 81/215 (37%), Positives = 115/215 (53%), Gaps = 36/215 (16%)

Query: 18  TPLSASQILTRILPSGDGDAE-NLQRILRLLTSYG------------------------- 51
           +P+S ++I ++ LP+ + +A   L RILRLLTSY                          
Sbjct: 53  SPMSPTEIASK-LPTKNPEAPVMLDRILRLLTSYSVLTCSNRKLSGDGVERIYGLGPVCK 111

Query: 52  -------GLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEM 104
                  G+S A   L +    LM +W  + +A+LD  I PF K +G  A+ Y+G  P  
Sbjct: 112 YLTKNEDGVSIAALCLMNQDKVLMESWYHLKDAILDGGI-PFNKAYGMSAFEYHGTDPRF 170

Query: 105 NGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFD 164
           N +    MS  S   +  +L+ Y GF+G+  LVDVGG  G  L+MI+ K+  + +GINFD
Sbjct: 171 NKVFNNGMSNHSTITMKKILETYKGFEGLTSLVDVGGGIGATLKMIVSKYPNL-KGINFD 229

Query: 165 LPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
           LP V+ +APS  G+ H+GGD F S+P  DAIFMKW
Sbjct: 230 LPHVIEDAPSHPGIEHVGGDMFVSVPKGDAIFMKW 264

Methylates OH residues of flavonoid compounds. Substrate preference is quercetin > myricetin >> luteolin. Dihydroquercetin is not a substrate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 6

>sp|Q8W013|COMT1_CATRO Caffeic acid 3-O-methyltransferase OS=Catharanthus roseus GN=COMT1 PE=2 SV=1

 Score =  133 bits (334), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 82/207 (39%), Positives = 109/207 (52%), Gaps = 35/207 (16%)

Query: 26  LTRILPSGDGDAE-NLQRILRLLTSYG--------------------------------G 52
           L   LP+ + DA   L RILRLL SY                                 G
Sbjct: 62  LAAQLPTQNPDAPVMLDRILRLLASYSVLNCTLKDLPDGGIERLYSLAPVCKFLTKNEDG 121

Query: 53  LSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAM 112
           +S A  +L +    LM +W  + +AVL+  I PF K +G  A+ Y+GK P  N +  + M
Sbjct: 122 VSMAALLLMNQDKVLMESWYHLKDAVLEGGI-PFNKAYGMTAFEYHGKDPRFNKVFNQGM 180

Query: 113 SGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEA 172
           S  S   +  +L+ Y GF+G+K +VDVGG  G  L MI+ K+  I +GINFDLP V+ +A
Sbjct: 181 SNHSTIIMKKILEIYQGFQGLKTVVDVGGGTGATLNMIVSKYPSI-KGINFDLPHVIEDA 239

Query: 173 PSILGVTHIGGDTFKSIPAADAIFMKW 199
           PS  GV H+GGD F S+P  DAIFMKW
Sbjct: 240 PSYPGVDHVGGDMFVSVPKGDAIFMKW 266

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Catharanthus roseus (taxid: 4058)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q43046|COMT1_POPKI Caffeic acid 3-O-methyltransferase 1 OS=Populus kitakamiensis GN=HOMT1 PE=3 SV=1

 Score =  132 bits (332), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/213 (38%), Positives = 112/213 (52%), Gaps = 36/213 (16%)

Query: 20  LSASQILTRILPSGDGDAE-NLQRILRLLTSYG--------------------------- 51
           LS S+I +  LP+ + DA   L RILRLL SY                            
Sbjct: 57  LSTSEIASH-LPTKNPDAPVMLDRILRLLASYSILTCSLKDLPDGKVERLYGLAPVCKFL 115

Query: 52  -----GLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNG 106
                G+S +P  L +    LM +W  + +A+L+  I PF K +G  A+ Y+G  P  N 
Sbjct: 116 TKNEDGVSVSPLCLMNQDKVLMESWYYLKDAILEGGI-PFNKAYGMTAFEYHGTDPRFNK 174

Query: 107 LMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP 166
           +  K MS  S   +  +L+ Y GF+G+  LVDVGG  G  +  I+ K+  I +GINFDLP
Sbjct: 175 VFNKGMSDHSTITMKKILETYKGFEGLTSLVDVGGGTGAVVNTIVSKYPSI-KGINFDLP 233

Query: 167 EVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
            V+ +APS  GV H+GGD F S+P ADA+FMKW
Sbjct: 234 HVIEDAPSYPGVEHVGGDMFVSVPNADAVFMKW 266

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Populus kitakamiensis (taxid: 34292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|O82054|COMT1_SACOF Caffeic acid 3-O-methyltransferase OS=Saccharum officinarum GN=COMT PE=2 SV=1

 Score =  130 bits (327), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 81/217 (37%), Positives = 107/217 (49%), Gaps = 35/217 (16%)

Query: 16  ANTPLSASQILTR--ILPSGDGDAENLQRILRLLTSYG---------------------- 51
           A   L+  +++ R  + P+    A+ + R+LRLL SY                       
Sbjct: 51  AGKALAPEEVVARLPVAPTNPDAADMVDRMLRLLASYDVVKCQMEDKDGKYERRYSAAPV 110

Query: 52  ---------GLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMP 102
                    G+S A   L +    LM +W  + +AVLD  I PF K +G  A+ Y+G  P
Sbjct: 111 GKWLTPNEDGVSMAALTLMNQDKVLMESWYYLKDAVLDGGI-PFNKAYGMTAFEYHGTDP 169

Query: 103 EMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGIN 162
             N +  + M   SV     +L+ Y GF+GV  LVDVGG  G  L  I   H  I +GIN
Sbjct: 170 RFNRVFNEGMKNHSVIITKKLLEFYTGFEGVSTLVDVGGGIGATLHAITSHHPQI-KGIN 228

Query: 163 FDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
           FDLP V+ EAP   GV H+GGD FKS+PA DAI MKW
Sbjct: 229 FDLPHVISEAPPFPGVQHVGGDMFKSVPAGDAILMKW 265

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Saccharum officinarum (taxid: 4547)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
224069629	364	beta-alanine n-methyltransferase related	0.919	0.502	0.65	3e-73
225441106	358	PREDICTED: caffeic acid 3-O-methyltransf	0.914	0.508	0.645	3e-73
147799198	358	hypothetical protein VITISV_030414 [Viti	0.914	0.508	0.640	1e-72
449440171	409	PREDICTED: caffeic acid 3-O-methyltransf	0.919	0.447	0.641	5e-72
356549592	355	PREDICTED: caffeic acid 3-O-methyltransf	0.924	0.518	0.639	4e-71
255556786	357	o-methyltransferase, putative [Ricinus c	0.914	0.509	0.626	5e-70
15231756	359	putative O-diphenol-O-methyl transferase	0.924	0.512	0.620	1e-67
30313849	375	S-adenosyl-L-methionine: beta-alanine N-	0.919	0.488	0.502	2e-56
357464627	358	Caffeic acid 3-O-methyltransferase [Medi	0.939	0.522	0.5	3e-54
357464631	358	Caffeic acid 3-O-methyltransferase [Medi	0.919	0.511	0.511	6e-54

>gi|224069629|ref|XP_002326388.1| beta-alanine n-methyltransferase related [Populus trichocarpa] gi|222833581|gb|EEE72058.1| beta-alanine n-methyltransferase related [Populus trichocarpa]

 Score =  280 bits (715), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 143/220 (65%), Positives = 160/220 (72%), Gaps = 37/220 (16%)

Query: 16  ANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG------------------------ 51
           +N PLSASQIL RI  +G  D ENLQRILR+LTSYG                        
Sbjct: 48  SNAPLSASQILQRIASTG-SDPENLQRILRMLTSYGVFEEHLTIESSPLDGSASERKYSL 106

Query: 52  ------------GLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYG 99
                       GLSYAPY+LQHHQDALM AWPLVHEAVLDPT EPFVK +GEPAY YYG
Sbjct: 107 TEVGKTLVTDTEGLSYAPYVLQHHQDALMKAWPLVHEAVLDPTTEPFVKANGEPAYDYYG 166

Query: 100 KMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICE 159
           K PEMN LM KAMSGVSVPF+ ++LDGY+GFKGV++LVDVGGSAGDCLRMIL+KH  + +
Sbjct: 167 KQPEMNELMLKAMSGVSVPFMEAMLDGYDGFKGVERLVDVGGSAGDCLRMILKKHPGVRQ 226

Query: 160 GINFDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
           GINFDLPEVV +AP I GVT++GGD FKSIP  DAIFMKW
Sbjct: 227 GINFDLPEVVAKAPIIPGVTNVGGDMFKSIPDGDAIFMKW 266

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441106|ref|XP_002264566.1| PREDICTED: caffeic acid 3-O-methyltransferase [Vitis vinifera]

 Score =  280 bits (715), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 140/217 (64%), Positives = 161/217 (74%), Gaps = 35/217 (16%)

Query: 16  ANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG------------------------ 51
           +N PLSASQILTR+LPSGD    NLQRILRLLT+YG                        
Sbjct: 46  SNAPLSASQILTRVLPSGD--PHNLQRILRLLTTYGVFAEHLLTDPSSDQVLRKYSLTDI 103

Query: 52  ---------GLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMP 102
                    GLSY  Y+LQH+Q+ LM+AWPLVHEAV+D T EPFVK +GEPAYSYYGK P
Sbjct: 104 GKTLVTDADGLSYGAYVLQHYQEELMTAWPLVHEAVVDSTTEPFVKANGEPAYSYYGKKP 163

Query: 103 EMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGIN 162
           EMN LM++AMSGVSVPF+ ++L+GYNGF GV++LVDVGGSAGDCLRMILQKH  I EGIN
Sbjct: 164 EMNDLMQRAMSGVSVPFMKAILNGYNGFDGVQRLVDVGGSAGDCLRMILQKHTNIKEGIN 223

Query: 163 FDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
           FDLPEVV +AP+I GVTH+GGD FKS+P  DAIFMKW
Sbjct: 224 FDLPEVVAKAPNIPGVTHVGGDMFKSVPDGDAIFMKW 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147799198|emb|CAN65776.1| hypothetical protein VITISV_030414 [Vitis vinifera]

 Score =  278 bits (711), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 139/217 (64%), Positives = 161/217 (74%), Gaps = 35/217 (16%)

Query: 16  ANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG------------------------ 51
           +N PLSASQILTR+LPSGD    NLQRILRLLT+YG                        
Sbjct: 46  SNAPLSASQILTRVLPSGD--PHNLQRILRLLTTYGVFAEHLLTDPSSDQVLRKYSLTDI 103

Query: 52  ---------GLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMP 102
                    GLSY  Y+LQH+Q+ LM+AWPLVHEAV+D T EPFVK +GEPAYSYYGK P
Sbjct: 104 GKTLVTDADGLSYGAYVLQHYQEELMTAWPLVHEAVVDSTTEPFVKANGEPAYSYYGKKP 163

Query: 103 EMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGIN 162
           EMN LM++AMSGVSVPF+ ++L+GY+GF GV++LVDVGGSAGDCLRMILQKH  I EGIN
Sbjct: 164 EMNDLMQRAMSGVSVPFMKAILNGYSGFDGVQRLVDVGGSAGDCLRMILQKHTNIKEGIN 223

Query: 163 FDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
           FDLPEVV +AP+I GVTH+GGD FKS+P  DAIFMKW
Sbjct: 224 FDLPEVVAKAPTIPGVTHVGGDMFKSVPDGDAIFMKW 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440171|ref|XP_004137858.1| PREDICTED: caffeic acid 3-O-methyltransferase-like [Cucumis sativus] gi|449524758|ref|XP_004169388.1| PREDICTED: caffeic acid 3-O-methyltransferase-like [Cucumis sativus]

 Score =  276 bits (705), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 138/215 (64%), Positives = 161/215 (74%), Gaps = 32/215 (14%)

Query: 16  ANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG------------------------ 51
           +N+PLSAS+IL R++PSG GDA NL+RILR+LTSYG                        
Sbjct: 98  SNSPLSASEILARVVPSG-GDAHNLERILRMLTSYGVFEEHLSPNSSNHRYSLTDVGKTL 156

Query: 52  -----GLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNG 106
                GLSYAPY+LQHHQDALM AWP VHEA +D T EPFV+ +GE AYSYYGK  EMN 
Sbjct: 157 VTDSDGLSYAPYVLQHHQDALMRAWPRVHEAAIDSTTEPFVRANGEAAYSYYGKKTEMNE 216

Query: 107 LMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP 166
           LM++AM+GVSVPF+ +VLDGY+GFKGV++LVDVGGSAGDCLRMILQK+  I EGINFDLP
Sbjct: 217 LMQRAMAGVSVPFMKAVLDGYDGFKGVEKLVDVGGSAGDCLRMILQKYPHIKEGINFDLP 276

Query: 167 EVVGEAPSI--LGVTHIGGDTFKSIPAADAIFMKW 199
           EVV  AP+I   GV+H+GGD FKSIP  DAIFMKW
Sbjct: 277 EVVARAPTIPETGVSHVGGDMFKSIPTGDAIFMKW 311

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549592|ref|XP_003543176.1| PREDICTED: caffeic acid 3-O-methyltransferase-like [Glycine max]

 Score =  273 bits (697), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 135/211 (63%), Positives = 157/211 (74%), Gaps = 27/211 (12%)

Query: 16  ANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG------------------------ 51
           AN PLSA++IL R+LP+G GDAENLQR+LR+L SYG                        
Sbjct: 47  ANNPLSAAEILPRLLPAGGGDAENLQRLLRMLASYGVFYEHLSAGERKYSLTDVGKTLVT 106

Query: 52  ---GLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLM 108
              GLSYA Y+LQHHQDALM AWP+VHEAV+DPT EPF + +GEPAY YY K PEMN LM
Sbjct: 107 DEQGLSYAHYVLQHHQDALMRAWPMVHEAVVDPTKEPFERANGEPAYGYYLKHPEMNDLM 166

Query: 109 RKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEV 168
            +AMSGVSVPFI ++L+GY+GF+GV++LVDVGGS GDCLRMIL+KH  I EGINFDLPEV
Sbjct: 167 VRAMSGVSVPFIRAMLEGYDGFQGVEKLVDVGGSGGDCLRMILEKHPTIKEGINFDLPEV 226

Query: 169 VGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
           V +AP I  VTH+GGD FK IP  DAIFMKW
Sbjct: 227 VAKAPQIPFVTHVGGDMFKFIPQGDAIFMKW 257

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556786|ref|XP_002519426.1| o-methyltransferase, putative [Ricinus communis] gi|223541289|gb|EEF42840.1| o-methyltransferase, putative [Ricinus communis]

 Score =  269 bits (687), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 134/214 (62%), Positives = 160/214 (74%), Gaps = 32/214 (14%)

Query: 17  NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG------------------------- 51
           N+PLSAS+IL+RI  SG GD +NLQRILR+L+SY                          
Sbjct: 47  NSPLSASEILSRINLSG-GDPDNLQRILRMLSSYNVFTEHLSAVDGVTERRYSLTEIGKT 105

Query: 52  ------GLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMN 105
                 GLSY  Y+LQHHQDALM AWPLVHEAVLD T EPF K +GEPAY YYGK PEMN
Sbjct: 106 LVTDVNGLSYGAYVLQHHQDALMRAWPLVHEAVLDSTTEPFAKANGEPAYDYYGKRPEMN 165

Query: 106 GLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL 165
            LM+KAMSG+SVPF+ +VL+GY+GF+GV+++VDVGGSAGDCL+ ILQK+  + EGINFDL
Sbjct: 166 ELMQKAMSGLSVPFMKAVLNGYDGFQGVEKIVDVGGSAGDCLKTILQKYPNVREGINFDL 225

Query: 166 PEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
           PEVV +AP+I GVTH+GGD FKS+P+ADAIFMKW
Sbjct: 226 PEVVAKAPNIPGVTHVGGDMFKSVPSADAIFMKW 259

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231756|ref|NP_190882.1| putative O-diphenol-O-methyl transferase [Arabidopsis thaliana] gi|14194165|gb|AAK56277.1|AF367289_1 AT3g53140/T4D2_70 [Arabidopsis thaliana] gi|6630734|emb|CAB64217.1| caffeic acid O-methyltransferase-like protein [Arabidopsis thaliana] gi|22137206|gb|AAM91448.1| AT3g53140/T4D2_70 [Arabidopsis thaliana] gi|332645520|gb|AEE79041.1| putative O-diphenol-O-methyl transferase [Arabidopsis thaliana]

 Score =  261 bits (666), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 134/216 (62%), Positives = 159/216 (73%), Gaps = 32/216 (14%)

Query: 16  ANTPLSASQILTRI-LPSGD---GDAENLQRILRLLTSYG-------------------- 51
           AN+PLSA++IL R+ LPS     GD ENLQRILR+LTSYG                    
Sbjct: 46  ANSPLSAAEILPRLHLPSHTTIGGDPENLQRILRMLTSYGVFSEHLVGSIERKYSLTDVG 105

Query: 52  --------GLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPE 103
                   GLSYA Y+LQHHQ+ALM AWPLVH AV++P  EP+VK +GE AY+ YGK  E
Sbjct: 106 KTLVTDSGGLSYAAYVLQHHQEALMRAWPLVHTAVVEPETEPYVKANGEAAYAQYGKSEE 165

Query: 104 MNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINF 163
           MNGLM+KAMSGVSVPF+ ++LDGY+GFK V  LVDVGGSAGDCLRMILQ+   + EGINF
Sbjct: 166 MNGLMQKAMSGVSVPFMKAILDGYDGFKSVDILVDVGGSAGDCLRMILQQFPNVREGINF 225

Query: 164 DLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
           DLPEVV +AP+I GVTH+GGD F+S+P+ADAIFMKW
Sbjct: 226 DLPEVVAKAPNIPGVTHVGGDMFQSVPSADAIFMKW 261

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30313849|gb|AAP03058.1| S-adenosyl-L-methionine: beta-alanine N-methyltransferase [Limonium latifolium]

 Score =  223 bits (569), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 112/223 (50%), Positives = 150/223 (67%), Gaps = 40/223 (17%)

Query: 16  ANTPLSASQILTRILPSG--DGDAENLQRILRLLTSYGGLS------------------- 54
           +NTP+SA++IL+R LP      DAENLQR+LR+LTS+G  S                   
Sbjct: 56  SNTPVSAAEILSR-LPDAPATADAENLQRLLRVLTSFGVFSEHLDTTSSSSSSTSERRYC 114

Query: 55  -----------------YAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSY 97
                            +  Y+LQHHQ+ L+ AWP +H A+LD + EPF +V+GEPAY Y
Sbjct: 115 LTEVGQTLVSFDESCPSHGAYVLQHHQETLLKAWPFLHTAILDASTEPFARVNGEPAYQY 174

Query: 98  YGKMPEMNGLMRKAMSGVSVPFITSVL-DGYNGFKGVKQLVDVGGSAGDCLRMILQKHRF 156
           YGK  E+N  M+ AMSGVSVP++ ++L  GY+GF+GVK LVDVGGS+GDCLRMI+ K++ 
Sbjct: 175 YGKNDELNKNMQYAMSGVSVPYMKALLGSGYDGFEGVKTLVDVGGSSGDCLRMIINKYKD 234

Query: 157 ICEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
           I + INFDLPEVV +AP I G+TH+GG+ F+S+P+ DAIF+KW
Sbjct: 235 IPKAINFDLPEVVAKAPKIPGITHVGGNMFESVPSGDAIFVKW 277

Source: Limonium latifolium

Species: Limonium latifolium

Genus: Limonium

Family: Plumbaginaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464627|ref|XP_003602595.1| Caffeic acid 3-O-methyltransferase [Medicago truncatula] gi|217072478|gb|ACJ84599.1| unknown [Medicago truncatula] gi|355491643|gb|AES72846.1| Caffeic acid 3-O-methyltransferase [Medicago truncatula] gi|388498338|gb|AFK37235.1| unknown [Medicago truncatula]

 Score =  216 bits (551), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 110/220 (50%), Positives = 145/220 (65%), Gaps = 33/220 (15%)

Query: 8   EGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG---------------- 51
           +GGK     NTPLSASQIL+ + P+G GDAENLQRILRLLT+Y                 
Sbjct: 46  QGGK-----NTPLSASQILSIVRPNGGGDAENLQRILRLLTTYTIFVEDLSSNGERKYSL 100

Query: 52  ------------GLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYG 99
                       GL+ A + +QHHQD  + AWPLV +AV DPT+EPF K+HGE AY+Y  
Sbjct: 101 TDVGKALVPDDHGLTCASFFVQHHQDPYLRAWPLVGDAVEDPTVEPFEKLHGEAAYAYCT 160

Query: 100 KMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICE 159
           K PE   L   +MSG+S+P++  +L+ Y+GFKGV+ LVDVGG++G  L MI+ K+  I +
Sbjct: 161 KGPEEMSLFYASMSGMSLPYMREMLENYDGFKGVETLVDVGGNSGVSLNMIMNKYPNILK 220

Query: 160 GINFDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
           GINFDLP+++  AP   G+TH+GGD  +S+PA DAIF+KW
Sbjct: 221 GINFDLPDMISSAPQYPGITHVGGDALESVPAGDAIFIKW 260

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464631|ref|XP_003602597.1| Caffeic acid 3-O-methyltransferase [Medicago truncatula] gi|355491645|gb|AES72848.1| Caffeic acid 3-O-methyltransferase [Medicago truncatula]

 Score =  215 bits (548), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 108/211 (51%), Positives = 140/211 (66%), Gaps = 28/211 (13%)

Query: 17  NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG------------------------- 51
           NTPLSASQIL+ + P+G GDAENLQRILRLLT+Y                          
Sbjct: 50  NTPLSASQILSIVRPNGGGDAENLQRILRLLTTYAIFAEDLSSNGKRKYSLTEVGKALVP 109

Query: 52  ---GLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLM 108
              GLSY  Y+LQH+QD  + AWPLV EAV DPT+EPF K+HGE AY+Y  K P+   L 
Sbjct: 110 DDDGLSYGTYVLQHYQDQYLRAWPLVGEAVEDPTVEPFEKLHGEGAYAYCMKRPDEMSLF 169

Query: 109 RKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEV 168
             +MSG+S+P +  +L+ Y+GFKGV+ LVDVGG++G  L MI+ K+  I +GINFDLP++
Sbjct: 170 YASMSGMSMPHMNEMLEKYDGFKGVESLVDVGGNSGVILNMIMNKYPNILKGINFDLPDM 229

Query: 169 VGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
           +  AP + G+TH+GGD  + +PA DAIF KW
Sbjct: 230 ISSAPQLPGITHVGGDALELVPAGDAIFTKW 260

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	199
TAIR|locus:2102038	359	AT3G53140 [Arabidopsis thalian	0.773	0.428	0.714	6e-68
TAIR|locus:2153423	363	OMT1 "AT5G54160" [Arabidopsis	0.834	0.457	0.421	1e-29
UNIPROTKB|P93324	372	P93324 "Isoliquiritigenin 2'-O	0.663	0.354	0.428	2.9e-29
UNIPROTKB|Q6ZD89	368	ROMT-9 "Flavone 3'-O-methyltra	0.733	0.396	0.409	1.2e-28
TAIR|locus:2038026	352	AT1G33030 [Arabidopsis thalian	0.738	0.417	0.4	3.6e-27
UNIPROTKB|Q84N28	360	OMT1 "Flavone O-methyltransfer	0.894	0.494	0.367	1.5e-26
TAIR|locus:2034016	363	AT1G51990 [Arabidopsis thalian	0.773	0.424	0.374	4e-26
UNIPROTKB|A8QW52	376	EOMT "Eugenol O-methyltransfer	0.653	0.345	0.386	1.9e-22
TAIR|locus:2204680	381	AT1G77520 [Arabidopsis thalian	0.924	0.482	0.317	2.2e-21
TAIR|locus:2204695	381	AT1G77530 [Arabidopsis thalian	0.763	0.398	0.357	3e-21

TAIR|locus:2102038 AT3G53140 [Arabidopsis thaliana (taxid:3702)]

 Score = 593 (213.8 bits), Expect = 6.0e-68, Sum P(2) = 6.0e-68
 Identities = 110/154 (71%), Positives = 131/154 (85%)

Query:    46 LLTSYGGLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMN 105
             L+T  GGLSYA Y+LQHHQ+ALM AWPLVH AV++P  EP+VK +GE AY+ YGK  EMN
Sbjct:   108 LVTDSGGLSYAAYVLQHHQEALMRAWPLVHTAVVEPETEPYVKANGEAAYAQYGKSEEMN 167

Query:   106 GLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL 165
             GLM+KAMSGVSVPF+ ++LDGY+GFK V  LVDVGGSAGDCLRMILQ+   + EGINFDL
Sbjct:   168 GLMQKAMSGVSVPFMKAILDGYDGFKSVDILVDVGGSAGDCLRMILQQFPNVREGINFDL 227

Query:   166 PEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
             PEVV +AP+I GVTH+GGD F+S+P+ADAIFMKW
Sbjct:   228 PEVVAKAPNIPGVTHVGGDMFQSVPSADAIFMKW 261

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2153423 OMT1 "AT5G54160" [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 72/171 (42%), Positives = 100/171 (58%)

Query:    32 SGDGDAE--NLQRILRLLT-SYGGLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVK 88
             SGDG      L  + + LT +  G+S A   L +    LM +W  + +A+LD  I PF K
Sbjct:    96 SGDGVERIYGLGPVCKYLTKNEDGVSIAALCLMNQDKVLMESWYHLKDAILDGGI-PFNK 154

Query:    89 VHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLR 148
              +G  A+ Y+G  P  N +    MS  S   +  +L+ Y GF+G+  LVDVGG  G  L+
Sbjct:   155 AYGMSAFEYHGTDPRFNKVFNNGMSNHSTITMKKILETYKGFEGLTSLVDVGGGIGATLK 214

Query:   149 MILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
             MI+ K+  + +GINFDLP V+ +APS  G+ H+GGD F S+P  DAIFMKW
Sbjct:   215 MIVSKYPNL-KGINFDLPHVIEDAPSHPGIEHVGGDMFVSVPKGDAIFMKW 264

GO:0030744 "luteolin O-methyltransferase activity" evidence=IDA

GO:0030755 "quercetin 3-O-methyltransferase activity" evidence=IDA

GO:0033799 "myricetin 3'-O-methyltransferase activity" evidence=IDA

GO:0047763 "caffeate O-methyltransferase activity" evidence=ISS;IMP

GO:0051555 "flavonol biosynthetic process" evidence=IDA

GO:0009809 "lignin biosynthetic process" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|P93324 P93324 "Isoliquiritigenin 2'-O-methyltransferase" [Medicago sativa (taxid:3879)]

 Score = 291 (107.5 bits), Expect = 2.9e-29, Sum P(2) = 2.9e-29
 Identities = 57/133 (42%), Positives = 82/133 (61%)

Query:    66 ALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLD 125
             AL+  W    EAV+D  I+ F  VHG   Y + GK  +MN +  K+M  V    +  +L+
Sbjct:   143 ALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLE 202

Query:   126 GYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDT 185
              Y GF+G+  LVDVGG +G  L +I+ K+  I +GINFDLP+V+  AP + G+ H+GGD 
Sbjct:   203 IYTGFEGISTLVDVGGGSGRNLELIISKYPLI-KGINFDLPQVIENAPPLSGIEHVGGDM 261

Query:   186 FKSIPAADAIFMK 198
             F S+P  DA+ +K
Sbjct:   262 FASVPQGDAMILK 274

GO:0030751 "licodione 2'-O-methyltransferase activity" evidence=IDA

GO:0033802 "isoliquiritigenin 2'-O-methyltransferase activity" evidence=IDA

UNIPROTKB|Q6ZD89 ROMT-9 "Flavone 3'-O-methyltransferase 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 287 (106.1 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
 Identities = 61/149 (40%), Positives = 81/149 (54%)

Query:    52 GLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKA 111
             G+S A   L +    LM +W  + +AVLD  I PF K +G  A+ Y+G     N +  + 
Sbjct:   125 GVSMAALALMNQDKVLMESWYYLKDAVLDGGI-PFNKAYGMTAFEYHGTDARFNRVFNEG 183

Query:   112 MSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGE 171
             M   SV     +LD Y GF     +VDVGG  G  +  ++ +H  I  GIN+DLP V+ E
Sbjct:   184 MKNHSVIITKKLLDLYTGFDAASTVVDVGGGVGATVAAVVSRHPHI-RGINYDLPHVISE 242

Query:   172 APSILGVTHIGGDTFKSIP-AADAIFMKW 199
             AP   GV H+GGD F S+P   DAI MKW
Sbjct:   243 APPFPGVEHVGGDMFASVPRGGDAILMKW 271

GO:0030744 "luteolin O-methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

TAIR|locus:2038026 AT1G33030 [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 3.6e-27, Sum P(2) = 3.6e-27
 Identities = 60/150 (40%), Positives = 81/150 (54%)

Query:    51 GGLSYAPYMLQHHQDALMS-AWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMR 109
             GG S AP M+   QD +++  W  + ++VL+  + PF   HG  A    G       + +
Sbjct:   106 GGGSLAP-MVNLFQDKVVTDMWYNLKDSVLEGGL-PFNNTHGSSAVELVGSDSRFREVFQ 163

Query:   110 KAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVV 169
              +M G +  FI   L  YNGF GVK LVDVGG  G  L  I+ KH  I + INFDLP V+
Sbjct:   164 SSMKGFNEVFIEEFLKNYNGFDGVKSLVDVGGGDGSLLSRIISKHTHIIKAINFDLPTVI 223

Query:   170 GEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
               +    G+ H+ GD F + P  +AIFMKW
Sbjct:   224 NTSLPSPGIEHVAGDMFTNTPKGEAIFMKW 253

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0009809 "lignin biosynthetic process" evidence=ISS

UNIPROTKB|Q84N28 OMT1 "Flavone O-methyltransferase 1" [Triticum aestivum (taxid:4565)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 68/185 (36%), Positives = 101/185 (54%)

Query:    20 LSASQILTRILPSG-DGDAENLQR---ILRLLT-SYGGLSYAPYMLQHHQDALMSAWPLV 74
             L++  +++  +  G DG      R   + + LT +  G+S A   L +    LM +W  +
Sbjct:    81 LASYNVVSCTMEEGKDGRLSRRYRAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYL 140

Query:    75 HEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVK 134
              +AVLD  I PF K +G  A+ Y+G  P  N +  + M   S+     +L+ Y GF+G+ 
Sbjct:   141 KDAVLDGGI-PFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLEVYKGFEGLG 199

Query:   135 QLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPAADA 194
              +VDVGG  G  +  I   +  I +GINFDLP V+ EA    GVTH+GGD F+ +P+ DA
Sbjct:   200 TIVDVGGGVGATVGAITAAYPAI-KGINFDLPHVISEAQPFPGVTHVGGDMFQKVPSGDA 258

Query:   195 IFMKW 199
             I MKW
Sbjct:   259 ILMKW 263

GO:0009611 "response to wounding" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IDA

GO:0042542 "response to hydrogen peroxide" evidence=IDA

TAIR|locus:2034016 AT1G51990 [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 4.0e-26, Sum P(2) = 4.0e-26
 Identities = 58/155 (37%), Positives = 82/155 (52%)

Query:    45 RLLTSYGGLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEM 104
             +L+    G S APY+L     A    W  + EA+ +     + + +    + Y  K   +
Sbjct:   111 KLIKDEDGFSIAPYVLAGCTKAKGGVWSYLTEAIQEGGASAWERANEALIFEYMKKNENL 170

Query:   105 NGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFD 164
               +  ++M+  +   +  +L+ Y GF+GV   VDVGGS G  L  IL K+  I +GINFD
Sbjct:   171 KKIFNESMTNHTSIVMKKILENYIGFEGVSDFVDVGGSLGSNLAQILSKYPHI-KGINFD 229

Query:   165 LPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
             LP +V EAP I GV HIGGD F  IP  + I MKW
Sbjct:   230 LPHIVKEAPQIHGVEHIGGDMFDEIPRGEVILMKW 264

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|A8QW52 EOMT "Eugenol O-methyltransferase" [Sorghum bicolor (taxid:4558)]

 Score = 241 (89.9 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
 Identities = 51/132 (38%), Positives = 73/132 (55%)

Query:    68 MSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGY 127
             M  W  + + VL     PF K +G P + Y G    MN L  +AM+  S+     +L+ +
Sbjct:   148 METWHNIKDGVLAGET-PFDKAYGMPVFEYLGANGTMNTLFNEAMASHSMIITKRLLEVF 206

Query:   128 NGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFK 187
              GF+    LVDVGG  G  ++MI  ++  I  GIN+DLP V+ +A  I GV H+ G+ F 
Sbjct:   207 RGFENYSVLVDVGGGNGTTMQMIRSQYENI-SGINYDLPHVIAQASPIEGVEHVAGNMFD 265

Query:   188 SIPAADAIFMKW 199
             +IP  DAI +KW
Sbjct:   266 NIPRGDAIILKW 277

GO:0008171 "O-methyltransferase activity" evidence=IDA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

TAIR|locus:2204680 AT1G77520 [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 2.2e-21, P = 2.2e-21
 Identities = 62/195 (31%), Positives = 94/195 (48%)

Query:    14 RLANTPLSASQILTRILPSGD-GDAENLQRILR--------LLTSYGGLSYAPYMLQHHQ 64
             R+ +  +S S +  R++ +G+ G    ++R+          L  S G  S  P  +  H 
Sbjct:    91 RMLSLLVSHSILKCRMIETGENGRTGKIERVYAAEPVCKYFLRDSDGTGSLVPLFMLLHT 150

Query:    65 DALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVL 124
                   W  + + +L+   + F   HG   + Y         L  +AMS  S   +  VL
Sbjct:   151 QVFFKTWTNLKDVILEGR-DAFNSAHGMKIFEYINSDQPFAELFNRAMSEPSTMIMKKVL 209

Query:   125 DGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGD 184
             D Y GF+ V  LVDVGG  G  L ++  K+  I +G+NFDL +V+ +AP   GV H+ GD
Sbjct:   210 DVYRGFEDVNTLVDVGGGNGTVLGLVTSKYPHI-KGVNFDLAQVLTQAPFYPGVEHVSGD 268

Query:   185 TFKSIPAADAIFMKW 199
              F  +P  DA+FMKW
Sbjct:   269 MFVEVPKGDAVFMKW 283

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2204695 AT1G77530 [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 55/154 (35%), Positives = 80/154 (51%)

Query:    46 LLTSYGGLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMN 105
             L  S G  S +  +L  H   ++  W  + + +L+   + F   H    + Y     + +
Sbjct:   132 LKDSDGSGSLSSLLLLLHSQVILKTWTNLKDVILEGK-DAFSSAHDMRLFEYISSDDQFS 190

Query:   106 GLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL 165
              L  +AMS  S   +  VL+ Y GF+ V  LVDVGG  G  L +I  K+  I +G+NFDL
Sbjct:   191 KLFHRAMSESSTMVMKKVLEEYRGFEDVNTLVDVGGGIGTILGLITSKYPHI-KGVNFDL 249

Query:   166 PEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
              +V+ +AP   GV H+ GD F  +P  DAIFMKW
Sbjct:   250 AQVLTQAPFYPGVKHVSGDMFIEVPKGDAIFMKW 283

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	199
pfam00891	239	pfam00891, Methyltransf_2, O-methyltransferase	2e-43

>gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase

 Score =  145 bits (367), Expect = 2e-43
 Identities = 55/155 (35%), Positives = 82/155 (52%), Gaps = 2/155 (1%)

Query: 45  RLLTSYGGLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEM 104
            L+      S AP +L +    L+ +W  + +AV +    PF +  G P + Y G  PE 
Sbjct: 15  LLVKGEDSPSLAPLLLMYADPTLLESWAHLKDAVREGGP-PFERAFGMPFFEYLGADPEF 73

Query: 105 NGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFD 164
           N +  +AM+  S   +  +L+    F G+  LVDVGG  G     I++ +    +GI FD
Sbjct: 74  NRVFNRAMAAHSRLVMKKILETAFDFSGLSSLVDVGGGTGALAAAIVRAYPH-IKGIVFD 132

Query: 165 LPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
           LP V+ +APS   V  +GGD F+S+P ADAI +KW
Sbjct: 133 LPHVIADAPSADRVEFVGGDFFESVPEADAILLKW 167

This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	199
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	99.97
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	99.96
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.95
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	98.83
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	98.7
PRK06922	677	hypothetical protein; Provisional	98.66
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.61
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	98.56
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.52
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.52
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	98.45
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	98.45
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	98.43
TIGR00740	239	methyltransferase, putative. A simple BLAST search	98.43
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.42
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.41
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.4
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	98.39
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	98.38
PRK04457	262	spermidine synthase; Provisional	98.36
PF08100	51	Dimerisation: Dimerisation domain; InterPro: IPR01	98.31
COG2890	280	HemK Methylase of polypeptide chain release factor	98.29
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	98.28
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	98.27
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.27
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	98.24
PRK11207	197	tellurite resistance protein TehB; Provisional	98.21
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.18
PLN02244	340	tocopherol O-methyltransferase	98.18
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	98.18
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.17
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	98.17
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.17
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.17
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	98.17
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	98.15
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	98.14
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.14
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	98.13
PRK10258	251	biotin biosynthesis protein BioC; Provisional	98.12
PLN02336	475	phosphoethanolamine N-methyltransferase	98.12
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	98.11
PRK08317	241	hypothetical protein; Provisional	98.1
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	98.09
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.08
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.07
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.07
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	98.06
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.06
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	98.06
PLN02233	261	ubiquinone biosynthesis methyltransferase	98.05
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.05
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	98.05
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	98.03
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	98.02
PLN02490	340	MPBQ/MSBQ methyltransferase	98.01
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.01
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	98.0
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.0
PRK07402	196	precorrin-6B methylase; Provisional	97.99
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	97.98
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.97
PRK06202	232	hypothetical protein; Provisional	97.96
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	97.95
PLN02366	308	spermidine synthase	97.93
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	97.93
PLN03075	296	nicotianamine synthase; Provisional	97.93
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	97.91
PHA03411	279	putative methyltransferase; Provisional	97.9
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	97.9
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	97.87
COG4123	248	Predicted O-methyltransferase [General function pr	97.85
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	97.82
PRK05785	226	hypothetical protein; Provisional	97.8
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	97.77
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	97.74
PRK00811	283	spermidine synthase; Provisional	97.74
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	97.73
PRK14968	188	putative methyltransferase; Provisional	97.71
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	97.7
PHA03412	241	putative methyltransferase; Provisional	97.7
PRK14967	223	putative methyltransferase; Provisional	97.7
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.64
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	97.63
PRK01581	374	speE spermidine synthase; Validated	97.62
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	97.6
PLN02336	475	phosphoethanolamine N-methyltransferase	97.59
PRK03612	521	spermidine synthase; Provisional	97.58
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	97.57
PLN02672	1082	methionine S-methyltransferase	97.56
PRK04266	226	fibrillarin; Provisional	97.53
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	97.52
PRK12335	287	tellurite resistance protein TehB; Provisional	97.51
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	97.5
PRK04148	134	hypothetical protein; Provisional	97.5
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	97.49
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	97.47
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	97.47
KOG1271	227	consensus Methyltransferases [General function pre	97.47
TIGR00438	188	rrmJ cell division protein FtsJ.	97.45
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	97.42
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	97.4
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	97.38
TIGR00452	314	methyltransferase, putative. Known examples to dat	97.37
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	97.36
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.35
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	97.32
TIGR03438	301	probable methyltransferase. This model represents	97.29
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	97.28
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	97.26
KOG2904	328	consensus Predicted methyltransferase [General fun	97.26
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	97.24
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	97.22
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	97.21
PLN02823	336	spermine synthase	97.2
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.2
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	97.2
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	97.19
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	97.19
PLN02585	315	magnesium protoporphyrin IX methyltransferase	97.18
PRK14902	444	16S rRNA methyltransferase B; Provisional	97.13
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	97.12
PTZ00146	293	fibrillarin; Provisional	97.12
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	97.11
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	97.11
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	97.09
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	97.07
COG4262	508	Predicted spermidine synthase with an N-terminal m	97.06
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	97.06
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	97.03
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	97.01
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	96.98
PRK00536	262	speE spermidine synthase; Provisional	96.94
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	96.93
PRK13255	218	thiopurine S-methyltransferase; Reviewed	96.9
PRK10901	427	16S rRNA methyltransferase B; Provisional	96.86
KOG2899	288	consensus Predicted methyltransferase [General fun	96.85
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	96.81
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	96.8
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	96.79
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	96.72
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	96.66
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	96.64
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	96.61
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	96.61
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	96.6
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	96.48
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	96.44
PRK14904	445	16S rRNA methyltransferase B; Provisional	96.36
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	96.34
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	96.32
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	96.27
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	96.26
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	96.22
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	96.21
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	96.2
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	96.18
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	96.11
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	96.11
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	96.07
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	95.97
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	95.94
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	95.92
PLN02476	278	O-methyltransferase	95.91
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	95.91
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	95.86
PRK13256	226	thiopurine S-methyltransferase; Reviewed	95.85
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	95.71
PF13679	141	Methyltransf_32: Methyltransferase domain	95.7
PRK14901	434	16S rRNA methyltransferase B; Provisional	95.67
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	95.66
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	95.5
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	95.49
PF09339	52	HTH_IclR: IclR helix-turn-helix domain; InterPro:	95.49
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	95.42
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.42
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	95.41
PRK14903	431	16S rRNA methyltransferase B; Provisional	95.22
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	95.21
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	95.19
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	95.01
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	94.98
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	94.94
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	94.88
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	94.84
PLN02589	247	caffeoyl-CoA O-methyltransferase	94.77
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	94.69
KOG3115	249	consensus Methyltransferase-like protein [General	94.68
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	94.54
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	94.31
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	94.27
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	94.21
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	94.06
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	93.94
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	93.9
PF01022	47	HTH_5: Bacterial regulatory protein, arsR family;	93.88
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	93.77
KOG2361	264	consensus Predicted methyltransferase [General fun	93.59
smart00550	68	Zalpha Z-DNA-binding domain in adenosine deaminase	93.59
KOG3010	261	consensus Methyltransferase [General function pred	93.41
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	93.04
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	92.86
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	92.71
PF09012	69	FeoC: FeoC like transcriptional regulator; InterPr	92.7
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	92.62
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	92.54
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	92.49
COG2384	226	Predicted SAM-dependent methyltransferase [General	92.35
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	91.65
COG4122	219	Predicted O-methyltransferase [General function pr	91.64
smart00346	91	HTH_ICLR helix_turn_helix isocitrate lyase regulat	91.24
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	91.07
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	90.61
COG3897	218	Predicted methyltransferase [General function pred	90.25
PF12840	61	HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_	89.89
COG4076	252	Predicted RNA methylase [General function predicti	89.89
PF13412	48	HTH_24: Winged helix-turn-helix DNA-binding; PDB:	89.87
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	89.79
KOG2730	263	consensus Methylase [General function prediction o	89.76
PF01978	68	TrmB: Sugar-specific transcriptional regulator Trm	89.66
PF04703	62	FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.	89.46
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	89.31
PF02082	83	Rrf2: Transcriptional regulator; InterPro: IPR0009	88.86
COG3355	126	Predicted transcriptional regulator [Transcription	88.83
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	88.82
smart00418	66	HTH_ARSR helix_turn_helix, Arsenical Resistance Op	88.79
PRK15090	257	DNA-binding transcriptional regulator KdgR; Provis	88.15
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	88.01
TIGR02431	248	pcaR_pcaU beta-ketoadipate pathway transcriptional	87.95
smart00419	48	HTH_CRP helix_turn_helix, cAMP Regulatory protein.	87.74
COG1414	246	IclR Transcriptional regulator [Transcription]	87.67
PF04967	53	HTH_10: HTH DNA binding domain; InterPro: IPR00705	87.51
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	87.25
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	87.24
PRK11569	274	transcriptional repressor IclR; Provisional	87.12
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	86.98
PRK10163	271	DNA-binding transcriptional repressor AllR; Provis	86.44
PRK15431	78	ferrous iron transport protein FeoC; Provisional	86.23
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	85.95
TIGR00122	69	birA_repr_reg BirA biotin operon repressor domain.	85.89
PF02796	45	HTH_7: Helix-turn-helix domain of resolvase; Inter	85.04
PF06163	127	DUF977: Bacterial protein of unknown function (DUF	85.04
cd00092	67	HTH_CRP helix_turn_helix, cAMP Regulatory protein	84.81
PF08220	57	HTH_DeoR: DeoR-like helix-turn-helix domain; Inter	84.74
PF00325	32	Crp: Bacterial regulatory proteins, crp family; In	84.74
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	84.38
KOG3924	419	consensus Putative protein methyltransferase invol	84.32
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	84.28
smart00344	108	HTH_ASNC helix_turn_helix ASNC type. AsnC: an auto	84.2
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	83.15
PRK06266	178	transcription initiation factor E subunit alpha; V	83.13
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	83.02
cd00090	78	HTH_ARSR Arsenical Resistance Operon Repressor and	82.99
TIGR00738	132	rrf2_super rrf2 family protein (putative transcrip	82.46
KOG4058	199	consensus Uncharacterized conserved protein [Funct	82.13
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	82.01
TIGR02010	135	IscR iron-sulfur cluster assembly transcription fa	81.87
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	81.74
PF08279	55	HTH_11: HTH domain; InterPro: IPR013196 Winged hel	80.87
COG2345	218	Predicted transcriptional regulator [Transcription	80.85
PRK09834	263	DNA-binding transcriptional activator MhpR; Provis	80.77
PHA02943	165	hypothetical protein; Provisional	80.76
TIGR02944	130	suf_reg_Xantho FeS assembly SUF system regulator,	80.7
PRK10857	164	DNA-binding transcriptional regulator IscR; Provis	80.29
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	80.27

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.97  E-value=3e-31  Score=212.01  Aligned_cols=144  Identities=30%  Similarity=0.476  Sum_probs=130.6

Q ss_pred             CChHHHHHHhcChhhHhhhhhHHHHhhCCCCChhhhhhCCCcccccccCchhHHHHHHHHhccchhhH-HHHhhhCCCCC
Q 037818           53 LSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFI-TSVLDGYNGFK  131 (199)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~~~~~~~~-~~~~~~~~~~~  131 (199)
                      .++..++.++.++..+++|.+|++++++|+ ++|...+|.++|+++.++|+..+.|+++|+..+.... +.+...++ |+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~d-~~   99 (241)
T PF00891_consen   22 PSMRGFVLFMISPELYPAWFRLTEAVRTGK-PPFEKAFGTPFFEYLEEDPELAKRFNAAMAEYSRLNAFDILLEAFD-FS   99 (241)
T ss_dssp             THHHHHHHHHTCHHHHHGGGGHHHHHHHSS--HHHHHHSS-HHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHST-TT
T ss_pred             CcHHHHHHHhcCHHHHHHHHHHHhhhccCC-CHHHHhcCCcHHHhhhhChHHHHHHHHHHHhhhhcchhhhhhcccc-cc
Confidence            456777777778899999999999999999 9999999988999999999999999999999988887 78889999 99


Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCCCCceEEeCCCCCCCCcccEEEecC
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW  199 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~~ri~~~~gd~f~~~P~aD~~~l~~  199 (199)
                      +.++|||||||+|.++.+++++||+++ +|++|+|+|++.+++.+||++++||||+++|.+|+|+|++
T Consensus       100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~-~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~D~~~l~~  166 (241)
T PF00891_consen  100 GFKTVVDVGGGSGHFAIALARAYPNLR-ATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVADVYLLRH  166 (241)
T ss_dssp             TSSEEEEET-TTSHHHHHHHHHSTTSE-EEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSESEEEEES
T ss_pred             CccEEEeccCcchHHHHHHHHHCCCCc-ceeeccHhhhhccccccccccccccHHhhhccccceeeeh
Confidence            999999999999999999999999999 9999999999999989999999999999999999999986

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=99.96  E-value=1.8e-29  Score=205.89  Aligned_cols=194  Identities=38%  Similarity=0.585  Sum_probs=171.5

Q ss_pred             CcchhccccccccCCCCCCHHHHHHHcCCCCC-CCcchHHHHHHHHhhCC--------------------------CCCh
Q 037818            3 DNECREGGKKVRLANTPLSASQILTRILPSGD-GDAENLQRILRLLTSYG--------------------------GLSY   55 (199)
Q Consensus         3 ~~~A~~lglf~~L~~g~~t~~eLA~~~~~~~~-~~~~~l~rlL~~l~~~g--------------------------~~~~   55 (199)
                      ..+|+|+||||.|.+++. +.|+|-.+-..+. .++..+.|+||.|++++                          ..++
T Consensus        23 lk~A~eL~v~d~l~~~~~-p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~~~~~Y~~~~~~~~~l~~~~~~S~  101 (342)
T KOG3178|consen   23 LKAACELGVFDILANAGS-PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLVGGEVYSATPVCKYFLKDSGGGSL  101 (342)
T ss_pred             HHHHHHcChHHHHHhCCC-HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeeecceeeeccchhhhheecCCCCch
Confidence            468999999999997444 7788876652112 22349999999999998                          1456


Q ss_pred             HHHHHHhcChhhHhhhhhHHHHhhCCCCChhhhhhCCCcccccccCchhHHHHHHHHhccchhhHHHHhhhCCCCCCcce
Q 037818           56 APYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQ  135 (199)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~  135 (199)
                      .+++...+++..++.|..|.++++.|+ .+|..++|...++|...++.....|+++|...+....+.+++.|.+|++...
T Consensus       102 a~~~~~~~~~v~~~~w~~l~dai~eg~-~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~  180 (342)
T KOG3178|consen  102 APLVLLNTSKVIMNTWQFLKDAILEGG-DAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNV  180 (342)
T ss_pred             hHHHHHhcccchhhhHHHHHHHHHhcc-cCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCce
Confidence            778888788889999999999999999 7899999988999999999999999999999999888888888888999999


Q ss_pred             EEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC-CCceEEeCCCCCCCCcccEEEecC
Q 037818          136 LVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI-LGVTHIGGDTFKSIPAADAIFMKW  199 (199)
Q Consensus       136 vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~-~ri~~~~gd~f~~~P~aD~~~l~~  199 (199)
                      +||||||.|..+..++..||+++ ++.||+|.+++.++.. +.|+.+.||||++.|.+|+|+|+|
T Consensus       181 avDvGgGiG~v~k~ll~~fp~ik-~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~daI~mkW  244 (342)
T KOG3178|consen  181 AVDVGGGIGRVLKNLLSKYPHIK-GINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDAIWMKW  244 (342)
T ss_pred             EEEcCCcHhHHHHHHHHhCCCCc-eeecCHHHHHhhhhhhcCCcceecccccccCCCcCeEEEEe
Confidence            99999999999999999999999 9999999999999988 999999999998899999999997

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.95  E-value=3.8e-28  Score=200.50  Aligned_cols=181  Identities=19%  Similarity=0.184  Sum_probs=136.0

Q ss_pred             cchhccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC-----CCChH---------------------H
Q 037818            4 NECREGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG-----GLSYA---------------------P   57 (199)
Q Consensus         4 ~~A~~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g-----~~~~~---------------------~   57 (199)
                      ++|+++||||.|.++|.|++|||+++|+  +++  .++||||+|+++|     +..|+                     +
T Consensus         8 ~aa~~Lglfd~L~~gp~t~~eLA~~~~~--~~~--~~~~lL~~L~~lgll~~~~~~y~~t~~~~~~l~~~~~~~~~~~~~   83 (306)
T TIGR02716         8 KAAIELDLFSHMAEGPKDLATLAADTGS--VPP--RLEMLLETLRQMRVINLEDGKWSLTEFADYMFSPTPKEPNLHQTP   83 (306)
T ss_pred             HHHHHcCcHHHHhcCCCCHHHHHHHcCC--ChH--HHHHHHHHHHhCCCeEecCCcEecchhHHhhccCCccchhhhcCc
Confidence            5799999999999999999999999999  887  9999999999999     11110                     1


Q ss_pred             HHHHhcChhhHhhhhhHHHHhhCCCCChhhhhhCCCcccccccCchhHHHHHHHH-hccchhhHHHHhhhCCCCCCcceE
Q 037818           58 YMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAM-SGVSVPFITSVLDGYNGFKGVKQL  136 (199)
Q Consensus        58 ~~~~~~~~~~~~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m-~~~~~~~~~~~~~~~~~~~~~~~v  136 (199)
                      +..+. .......|.+|.+++|+ + ++|...     +++....++... |...| +.......+.+++.++ +++..+|
T Consensus        84 ~~~~~-~~~~~~~~~~l~~~~r~-~-~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~-~~~~~~v  153 (306)
T TIGR02716        84 VAKAM-AFLADDFYMGLSQAVRG-Q-KNFKGQ-----VPYPPVTREDNL-YFEEIHRSNAKFAIQLLLEEAK-LDGVKKM  153 (306)
T ss_pred             hHHHH-HHHHHHHHHhHHHHhcC-C-cccccc-----cCCCCCCHHHHH-hHHHHHHhcchhHHHHHHHHcC-CCCCCEE
Confidence            11111 11122568999999984 3 334321     222222333333 44444 3444455667888888 8888999


Q ss_pred             EEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC-------CCceEEeCCCCC-CCCcccEEEecC
Q 037818          137 VDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI-------LGVTHIGGDTFK-SIPAADAIFMKW  199 (199)
Q Consensus       137 vDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~-------~ri~~~~gd~f~-~~P~aD~~~l~~  199 (199)
                      ||||||+|.++..+++++|+++ ++++|+|++++.++++       +||+++.+|+|+ ++|.+|+|++++
T Consensus       154 lDiG~G~G~~~~~~~~~~p~~~-~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~  223 (306)
T TIGR02716       154 IDVGGGIGDISAAMLKHFPELD-STILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCR  223 (306)
T ss_pred             EEeCCchhHHHHHHHHHCCCCE-EEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEh
Confidence            9999999999999999999999 9999999999988652       799999999996 677789998764

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=98.83  E-value=5.2e-09  Score=73.32  Aligned_cols=65  Identities=18%  Similarity=0.251  Sum_probs=54.7

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-------CCCceEEeCCC-CC-CCCc-ccEEEec
Q 037818          133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-------ILGVTHIGGDT-FK-SIPA-ADAIFMK  198 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-------~~ri~~~~gd~-f~-~~P~-aD~~~l~  198 (199)
                      ..+|||||||+|.++..+++.+|..+ ++.+|. |..++.+++       .+||+++.+|+ +. +.+. .|++++.
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~   77 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALARLFPGAR-VVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICS   77 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHHHHTTSE-EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEEC
T ss_pred             CCEEEEEcCcCCHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEEC
Confidence            36899999999999999999999999 999998 778877764       28999999999 43 3333 5998875

...

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=98.70  E-value=4.2e-08  Score=75.38  Aligned_cols=85  Identities=19%  Similarity=0.252  Sum_probs=63.7

Q ss_pred             HhccchhhHHH-HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeC
Q 037818          112 MSGVSVPFITS-VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGG  183 (199)
Q Consensus       112 m~~~~~~~~~~-~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~g  183 (199)
                      |...+...+.. ++..++ .....+|||||||+|.++..+++++|+.+ ++.+|. |..++.++++      ++++++.+
T Consensus        11 ~~~~~~~~~r~~~~~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~   88 (187)
T PRK08287         11 KVPMTKEEVRALALSKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQ-VTAIERNPDALRLIKENRQRFGCGNIDIIPG   88 (187)
T ss_pred             CCCCchHHHHHHHHHhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHhCCCCeEEEec
Confidence            33334433333 334555 66678999999999999999999999999 999998 7777777642      57999999


Q ss_pred             CCCCCCCc-ccEEEec
Q 037818          184 DTFKSIPA-ADAIFMK  198 (199)
Q Consensus       184 d~f~~~P~-aD~~~l~  198 (199)
                      |...+++. .|++++.
T Consensus        89 d~~~~~~~~~D~v~~~  104 (187)
T PRK08287         89 EAPIELPGKADAIFIG  104 (187)
T ss_pred             CchhhcCcCCCEEEEC
Confidence            98655555 4988864

>PRK06922 hypothetical protein; Provisional

Probab=98.66  E-value=4.6e-08  Score=87.20  Aligned_cols=105  Identities=17%  Similarity=0.166  Sum_probs=77.0

Q ss_pred             CCcccccccCchhHHHHHHHHhccchhh--HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchH-H
Q 037818           92 EPAYSYYGKMPEMNGLMRKAMSGVSVPF--ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPE-V  168 (199)
Q Consensus        92 ~~~~e~~~~~~~~~~~f~~~m~~~~~~~--~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~-v  168 (199)
                      ..+|+++...++..++|...|.......  .......++ |....+|||||||+|.++..+++.+|+.+ ++.+|+.+ .
T Consensus       377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d-~~~g~rVLDIGCGTG~ls~~LA~~~P~~k-VtGIDIS~~M  454 (677)
T PRK06922        377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD-YIKGDTIVDVGAGGGVMLDMIEEETEDKR-IYGIDISENV  454 (677)
T ss_pred             hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh-hcCCCEEEEeCCCCCHHHHHHHHhCCCCE-EEEEECCHHH
Confidence            3568888888888888887775433321  122233455 66678999999999999999999999999 99999964 4


Q ss_pred             HhcCCCC-----CCceEEeCCCCC-C--CCc--ccEEEec
Q 037818          169 VGEAPSI-----LGVTHIGGDTFK-S--IPA--ADAIFMK  198 (199)
Q Consensus       169 ~~~a~~~-----~ri~~~~gd~f~-~--~P~--aD~~~l~  198 (199)
                      ++.+++.     .+++++.+|..+ +  +|.  .|+|+++
T Consensus       455 Le~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn  494 (677)
T PRK06922        455 IDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYS  494 (677)
T ss_pred             HHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEc
Confidence            7666542     468888899875 2  443  4999865

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.61  E-value=1.8e-07  Score=75.35  Aligned_cols=75  Identities=23%  Similarity=0.301  Sum_probs=61.4

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCCCCceEEeCCCCCCCCc--ccEEEe
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSILGVTHIGGDTFKSIPA--ADAIFM  197 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~~ri~~~~gd~f~~~P~--aD~~~l  197 (199)
                      ..+++.++ .....+|||||||+|.++..+++++|+.+ ++.+|. |..++.+++. +++++.+|+.+..|.  .|+|++
T Consensus        19 ~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~-v~gvD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~fD~v~~   95 (255)
T PRK14103         19 YDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAV-IEALDSSPEMVAAARER-GVDARTGDVRDWKPKPDTDVVVS   95 (255)
T ss_pred             HHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHhc-CCcEEEcChhhCCCCCCceEEEE
Confidence            45667776 66678999999999999999999999999 999998 7788887653 689999998753333  499987


Q ss_pred             c
Q 037818          198 K  198 (199)
Q Consensus       198 ~  198 (199)
                      +
T Consensus        96 ~   96 (255)
T PRK14103         96 N   96 (255)
T ss_pred             e
Confidence            5

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=98.56  E-value=1.3e-07  Score=73.34  Aligned_cols=76  Identities=17%  Similarity=0.257  Sum_probs=65.8

Q ss_pred             HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-CCceEEeCCCCCCCCc--ccEE
Q 037818          120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-LGVTHIGGDTFKSIPA--ADAI  195 (199)
Q Consensus       120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-~ri~~~~gd~f~~~P~--aD~~  195 (199)
                      +..++...+ ......|+|+|||+|.....|+++||... .+.+|. |..++.|+.. +.++|..+|+-+..|+  .|++
T Consensus        19 a~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~-i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dll   96 (257)
T COG4106          19 ARDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAV-ITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLL   96 (257)
T ss_pred             HHHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCe-EeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchh
Confidence            456777787 88889999999999999999999999999 999996 8888888764 9999999999987775  4776


Q ss_pred             Ee
Q 037818          196 FM  197 (199)
Q Consensus       196 ~l  197 (199)
                      +-
T Consensus        97 fa   98 (257)
T COG4106          97 FA   98 (257)
T ss_pred             hh
Confidence            53

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.52  E-value=2.7e-07  Score=72.02  Aligned_cols=67  Identities=16%  Similarity=0.277  Sum_probs=57.5

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-CCCceEEeCCCCCCCCc--ccEEEec
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-ILGVTHIGGDTFKSIPA--ADAIFMK  198 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-~~ri~~~~gd~f~~~P~--aD~~~l~  198 (199)
                      .+..+|||||||+|.++..+++..|..+ .+.+|. |+.++.|++ .+++++..+|+++++|.  .|+++..
T Consensus        42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~-v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~  112 (204)
T TIGR03587        42 PKIASILELGANIGMNLAALKRLLPFKH-IYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTK  112 (204)
T ss_pred             CCCCcEEEEecCCCHHHHHHHHhCCCCe-EEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEEC
Confidence            4557899999999999999999999999 999997 788898887 47899999999987665  3998864

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.52  E-value=4.8e-07  Score=72.85  Aligned_cols=77  Identities=19%  Similarity=0.298  Sum_probs=63.2

Q ss_pred             HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-CCceEEeCCCCCCCCc--ccEE
Q 037818          120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-LGVTHIGGDTFKSIPA--ADAI  195 (199)
Q Consensus       120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-~ri~~~~gd~f~~~P~--aD~~  195 (199)
                      +..++..++ .....+|+|||||+|.++..+++.+|..+ ++.+|. |..++.+++. +++++..+|+.+..|.  .|++
T Consensus        20 ~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~-v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v   97 (258)
T PRK01683         20 ARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAAR-ITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLI   97 (258)
T ss_pred             HHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEE
Confidence            346677776 77778999999999999999999999999 999998 6778877764 7899999999763333  4988


Q ss_pred             Eec
Q 037818          196 FMK  198 (199)
Q Consensus       196 ~l~  198 (199)
                      +.+
T Consensus        98 ~~~  100 (258)
T PRK01683         98 FAN  100 (258)
T ss_pred             EEc
Confidence            764

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=98.45  E-value=2.7e-07  Score=68.49  Aligned_cols=66  Identities=21%  Similarity=0.267  Sum_probs=54.2

Q ss_pred             CcceEEEecCCccHHHHHHH-HHCCCCCeeeeccc-hHHHhcCCC------CCCceEEeCCCCC-C--CCc-ccEEEec
Q 037818          132 GVKQLVDVGGSAGDCLRMIL-QKHRFICEGINFDL-PEVVGEAPS------ILGVTHIGGDTFK-S--IPA-ADAIFMK  198 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~-~~~P~l~~~~v~Dl-p~v~~~a~~------~~ri~~~~gd~f~-~--~P~-aD~~~l~  198 (199)
                      +..+|||+|||+|.++..++ +.+|..+ .+.+|. |+.++.++.      .++++|..+|+++ +  ++. .|+++..
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~-i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~   80 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAK-IIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISN   80 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSE-EEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCE-EEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEc
Confidence            45799999999999999999 5689999 999997 788888875      2789999999998 3  333 5998864

...

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=98.45  E-value=1.8e-07  Score=70.95  Aligned_cols=66  Identities=18%  Similarity=0.229  Sum_probs=55.4

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCc--ccEEEec
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPA--ADAIFMK  198 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~--aD~~~l~  198 (199)
                      ...++||+|||+|.++..+++++|+.+ ++.+|. |..++.++++      +.++++.+|++++++.  .|+++++
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~-v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~N  105 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAK-VTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSN  105 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEE-EEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE-
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCE-EEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEc
Confidence            457999999999999999999999999 999997 6777777652      3499999999998774  3999874

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=98.43  E-value=4.7e-07  Score=76.80  Aligned_cols=76  Identities=12%  Similarity=0.059  Sum_probs=59.9

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccch-HHHhcCCCC---------CCceEEeCCCCCCCC
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP-EVVGEAPSI---------LGVTHIGGDTFKSIP  190 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp-~v~~~a~~~---------~ri~~~~gd~f~~~P  190 (199)
                      +-+++.++ .....+|||+|||+|.++..+++++|..+ ++.+|.. ..++.++++         +++++..+|.++.++
T Consensus       218 rllL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~-V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~  295 (378)
T PRK15001        218 RFFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAK-VVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE  295 (378)
T ss_pred             HHHHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCC
Confidence            34556665 33336999999999999999999999999 9999984 667766642         378999999998664


Q ss_pred             c--ccEEEec
Q 037818          191 A--ADAIFMK  198 (199)
Q Consensus       191 ~--aD~~~l~  198 (199)
                      .  .|+|+.+
T Consensus       296 ~~~fDlIlsN  305 (378)
T PRK15001        296 PFRFNAVLCN  305 (378)
T ss_pred             CCCEEEEEEC
Confidence            4  4999874

>TIGR00740 methyltransferase, putative

Probab=98.43  E-value=3.9e-07  Score=72.69  Aligned_cols=67  Identities=16%  Similarity=0.155  Sum_probs=55.4

Q ss_pred             CCcceEEEecCCccHHHHHHHHH--CCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC-CCCcccEEEec
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQK--HRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK-SIPAADAIFMK  198 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~--~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~-~~P~aD~~~l~  198 (199)
                      ....+|||||||+|.++..++++  +|+.+ .+.+|+ |..++.+++.       .+++++.+|+.+ ++|..|++++.
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~-v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~  129 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVK-IIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILN  129 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCe-EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeee
Confidence            45579999999999999999997  58899 999999 8888887642       479999999987 56667877653

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.42  E-value=6.2e-07  Score=70.96  Aligned_cols=75  Identities=12%  Similarity=0.144  Sum_probs=58.7

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCC------CCCceEEeCCCCC-CCCc-
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPS------ILGVTHIGGDTFK-SIPA-  191 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~------~~ri~~~~gd~f~-~~P~-  191 (199)
                      .+++.++ .....+|||||||+|.++..+++.+ |+.+ ++.+|+ |..++.+++      .++++++.+|..+ ++|. 
T Consensus        36 ~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~  113 (231)
T TIGR02752        36 DTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGH-VIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDN  113 (231)
T ss_pred             HHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCC
Confidence            3445555 5556899999999999999999986 6788 999998 677766653      2689999999986 5665 


Q ss_pred             -ccEEEec
Q 037818          192 -ADAIFMK  198 (199)
Q Consensus       192 -aD~~~l~  198 (199)
                       .|++++.
T Consensus       114 ~fD~V~~~  121 (231)
T TIGR02752       114 SFDYVTIG  121 (231)
T ss_pred             CccEEEEe
Confidence             3998864

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.41  E-value=1.8e-05  Score=64.16  Aligned_cols=154  Identities=12%  Similarity=0.051  Sum_probs=91.0

Q ss_pred             HHHHHcCCCCCCCc--chHHHHHHHHhhCCCCChHHHHHHhcChhhHhhhhhHHHHhhCCCCChhhhhhCCCcccccccC
Q 037818           24 QILTRILPSGDGDA--ENLQRILRLLTSYGGLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKM  101 (199)
Q Consensus        24 eLA~~~~~~~~~~~--~~l~rlL~~l~~~g~~~~~~~~~~~~~~~~~~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~  101 (199)
                      -|.+++|+..++.+  ...+|+-+.+...|-.++..++.....+.--.-|..|-+.+-.+. +-|            -++
T Consensus        10 ~i~~~~Gi~~~~~k~~~l~~rl~~r~~~~~~~~~~~y~~~l~~~~~~~e~~~l~~~lti~~-T~F------------fR~   76 (264)
T smart00138       10 LIYSRTGIVLTDYKRTLLQSRLSRRLRVLGLKDFSEYLELLTSHRGEEELAELLDLMTTNE-TRF------------FRE   76 (264)
T ss_pred             HHHHHhCCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHhcCCcHHHHHHHHHHhhcCC-Ccc------------cCC
Confidence            35567787333321  124455566666664455555544332211234677777776655 322            223


Q ss_pred             chhHHHHHHHHhccchhhHHHHhhhCCCCCCcceEEEecCCccH----HHHHHHHHCC-----CCCeeeeccc-hHHHhc
Q 037818          102 PEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGD----CLRMILQKHR-----FICEGINFDL-PEVVGE  171 (199)
Q Consensus       102 ~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~----~~~~l~~~~P-----~l~~~~v~Dl-p~v~~~  171 (199)
                      ++.-+.+.       ....+.+.+.-+ ....-+|+|+|||+|.    +++.+++..|     +.+ .+..|. |..++.
T Consensus        77 ~~~~~~l~-------~~vlp~l~~~~~-~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~-I~g~Dis~~~L~~  147 (264)
T smart00138       77 SKHFEALE-------EKVLPLLIASRR-HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVK-ILATDIDLKALEK  147 (264)
T ss_pred             cHHHHHHH-------HHHhHHHHHhcC-CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeE-EEEEECCHHHHHH
Confidence            32222221       222344444333 3445799999999997    5677777766     467 899997 677877


Q ss_pred             CCCC---------------------------------CCceEEeCCCCCC-CCc--ccEEEecC
Q 037818          172 APSI---------------------------------LGVTHIGGDTFKS-IPA--ADAIFMKW  199 (199)
Q Consensus       172 a~~~---------------------------------~ri~~~~gd~f~~-~P~--aD~~~l~~  199 (199)
                      |++.                                 .+|+|..+|+.++ .|.  -|+|+.++
T Consensus       148 Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crn  211 (264)
T smart00138      148 ARAGIYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRN  211 (264)
T ss_pred             HHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEech
Confidence            7641                                 3799999999984 434  39998764

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.40  E-value=3.6e-07  Score=73.32  Aligned_cols=67  Identities=22%  Similarity=0.250  Sum_probs=55.7

Q ss_pred             CCcceEEEecCCccHHHHHHHH--HCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC-CCCcccEEEec
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQ--KHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK-SIPAADAIFMK  198 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~--~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~-~~P~aD~~~l~  198 (199)
                      ....+|||||||+|..+..+++  .+|+.+ ++.+|. |..++.++++       .+|+++.+|+.+ +.+..|++++.
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~-v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~  132 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCK-IIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLN  132 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCe-EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehh
Confidence            3557999999999999999988  479999 999998 8888888652       489999999986 55667887753

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=98.39  E-value=4.8e-07  Score=74.15  Aligned_cols=66  Identities=23%  Similarity=0.196  Sum_probs=56.6

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc--ccEEEec
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA--ADAIFMK  198 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~--aD~~~l~  198 (199)
                      +..+|+|+|||+|.++..+++.+|+.+ ++.+|. |..++.|+++       +||+++.+|+++++|.  .|+++.+
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~-v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~N  196 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAE-VDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSN  196 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEEC
Confidence            346899999999999999999999999 999998 7888877753       5899999999987765  3998863

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.38  E-value=3.7e-07  Score=75.58  Aligned_cols=64  Identities=20%  Similarity=0.174  Sum_probs=56.0

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc--ccEEEec
Q 037818          134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA--ADAIFMK  198 (199)
Q Consensus       134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~--aD~~~l~  198 (199)
                      .+|+|+|||+|.++..+++.+|+.+ ++.+|. |..++.|+++       +||+++.+|+++.+|.  .|+++.+
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~-V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsN  208 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAE-VDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSN  208 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEEC
Confidence            6899999999999999999999999 999998 8888887753       5799999999987764  4998864

>PRK04457 spermidine synthase; Provisional

Probab=98.36  E-value=5e-07  Score=73.18  Aligned_cols=66  Identities=15%  Similarity=0.198  Sum_probs=56.3

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC---CCCcc-cEEEe
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK---SIPAA-DAIFM  197 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~---~~P~a-D~~~l  197 (199)
                      ++.++|+|||||.|.++..+++.+|+.+ ++++|+ |++++.++++       +|++++.+|..+   ..|.. |+|++
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~-v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~  142 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTR-QTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILV  142 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEE
Confidence            3557999999999999999999999999 999999 9999988742       789999999864   34443 99886

>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases

Probab=98.31  E-value=7.1e-08  Score=58.13  Aligned_cols=44  Identities=34%  Similarity=0.366  Sum_probs=35.5

Q ss_pred             CcchhccccccccCC---CCCCHHHHHHHcC-CCCCCC-cchHHHHHHHHh
Q 037818            3 DNECREGGKKVRLAN---TPLSASQILTRIL-PSGDGD-AENLQRILRLLT   48 (199)
Q Consensus         3 ~~~A~~lglf~~L~~---g~~t~~eLA~~~~-~~~~~~-~~~l~rlL~~l~   48 (199)
                      -+.|+++||||.|.+   +++|++||+.++. .  +|. +..+.|+||+|+
T Consensus         3 Lk~aveLgI~dii~~~g~~~ls~~eia~~l~~~--~p~~~~~L~RimR~L~   51 (51)
T PF08100_consen    3 LKCAVELGIPDIIHNAGGGPLSLSEIAARLPTS--NPSAPPMLDRIMRLLV   51 (51)
T ss_dssp             HHHHHHTTHHHHHHHHTTS-BEHHHHHHTSTCT---TTHHHHHHHHHHHHH
T ss_pred             HHHHHHcCcHHHHHHcCCCCCCHHHHHHHcCCC--CcchHHHHHHHHHHhC
Confidence            467999999999963   6999999999999 5  544 358999999985

It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.29  E-value=7.5e-07  Score=72.83  Aligned_cols=63  Identities=19%  Similarity=0.285  Sum_probs=54.7

Q ss_pred             eEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCc-ccEEEec
Q 037818          135 QLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPA-ADAIFMK  198 (199)
Q Consensus       135 ~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~-aD~~~l~  198 (199)
                      +|+|||+|+|..+..+++++|+++ ++..|+ |..++.|+++      .|+.++.+|+|++++. .|+++.+
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~-V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsN  183 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAE-VIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSN  183 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCe-EEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeC
Confidence            899999999999999999999999 999997 8888888753      5677777799998775 5998764

>TIGR00536 hemK_fam HemK family putative methylases

Probab=98.28  E-value=1.1e-06  Score=72.03  Aligned_cols=64  Identities=19%  Similarity=0.263  Sum_probs=55.4

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc--ccEEEec
Q 037818          134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA--ADAIFMK  198 (199)
Q Consensus       134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~--aD~~~l~  198 (199)
                      .+|+|+|||+|.++..+++.+|+.+ ++.+|. |..++.++++       +|++++.+|+++++|.  .|+++.+
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~-v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsN  189 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAE-VIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSN  189 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEEC
Confidence            6899999999999999999999999 999998 7788777753       4699999999987765  4988764

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=98.27  E-value=3.1e-06  Score=59.90  Aligned_cols=74  Identities=15%  Similarity=0.168  Sum_probs=56.1

Q ss_pred             HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC------CCCceEEeCCCCC---CCCc-
Q 037818          123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS------ILGVTHIGGDTFK---SIPA-  191 (199)
Q Consensus       123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~------~~ri~~~~gd~f~---~~P~-  191 (199)
                      +.+.++ .....+|+|+|||+|.++..+++++|+.+ ++.+|. +..++.+++      .++++++.+|...   ..+. 
T Consensus        11 ~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (124)
T TIGR02469        11 TLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGR-VYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPE   88 (124)
T ss_pred             HHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCce-EEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCC
Confidence            445555 55557999999999999999999999988 999998 566666553      2689999898763   2223 


Q ss_pred             ccEEEec
Q 037818          192 ADAIFMK  198 (199)
Q Consensus       192 aD~~~l~  198 (199)
                      .|++++.
T Consensus        89 ~D~v~~~   95 (124)
T TIGR02469        89 PDRVFIG   95 (124)
T ss_pred             CCEEEEC
Confidence            4888764

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.27  E-value=2.3e-06  Score=69.41  Aligned_cols=76  Identities=20%  Similarity=0.274  Sum_probs=60.0

Q ss_pred             HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----CCCceEEeCCCCC-CCCc--
Q 037818          120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----ILGVTHIGGDTFK-SIPA--  191 (199)
Q Consensus       120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----~~ri~~~~gd~f~-~~P~--  191 (199)
                      ...+++.++ .....+|||||||+|..+..+++.+ ..+ ++.+|+ |..++.+++    .++|+++.+|+.+ ++|.  
T Consensus        41 ~~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~-~~~-v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~  117 (263)
T PTZ00098         41 TTKILSDIE-LNENSKVLDIGSGLGGGCKYINEKY-GAH-VHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENT  117 (263)
T ss_pred             HHHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc-CCE-EEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCC
Confidence            345667776 7777899999999999999998876 578 999998 566666654    3689999999986 6775  


Q ss_pred             ccEEEec
Q 037818          192 ADAIFMK  198 (199)
Q Consensus       192 aD~~~l~  198 (199)
                      .|+++..
T Consensus       118 FD~V~s~  124 (263)
T PTZ00098        118 FDMIYSR  124 (263)
T ss_pred             eEEEEEh
Confidence            3998863

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=98.24  E-value=2.8e-06  Score=67.62  Aligned_cols=66  Identities=18%  Similarity=0.244  Sum_probs=57.4

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC-CCCcc--cEEEec
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK-SIPAA--DAIFMK  198 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~-~~P~a--D~~~l~  198 (199)
                      ...+|||||||+|.++..+++..+..+ ++++|. +..++.+++.      ..|+|+.||..+ |+|..  |+|.++
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g~g~-v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~  126 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVGTGE-VVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTIS  126 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCce-EEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEee
Confidence            468999999999999999999999888 999997 6778887753      239999999998 99984  999876

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.21  E-value=2.9e-06  Score=65.79  Aligned_cols=74  Identities=15%  Similarity=0.130  Sum_probs=56.2

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC-CCCcc
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK-SIPAA  192 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~-~~P~a  192 (199)
                      +.+++.++ .....+|||+|||+|..+..++++  ..+ ++.+|. |..++.+++.      .++++...|+.+ +++..
T Consensus        20 ~~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~--g~~-V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~   95 (197)
T PRK11207         20 SEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GFD-VTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGE   95 (197)
T ss_pred             HHHHHhcc-cCCCCcEEEECCCCCHHHHHHHHC--CCE-EEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCC
Confidence            45666666 555589999999999999999986  457 899998 6667766542      568899999986 45543


Q ss_pred             -cEEEec
Q 037818          193 -DAIFMK  198 (199)
Q Consensus       193 -D~~~l~  198 (199)
                       |+|+..
T Consensus        96 fD~I~~~  102 (197)
T PRK11207         96 YDFILST  102 (197)
T ss_pred             cCEEEEe
Confidence             988754

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.18  E-value=5.8e-06  Score=67.47  Aligned_cols=76  Identities=13%  Similarity=0.066  Sum_probs=60.9

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCc-c
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPA-A  192 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~-a  192 (199)
                      +-+++.++ .....+|+|+|||.|.++..+++.+|+.+ .+.+|. ...++.++++      ++.++...|.|++.+. -
T Consensus       148 ~lLl~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~-vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kf  225 (300)
T COG2813         148 RLLLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAK-LTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKF  225 (300)
T ss_pred             HHHHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCe-EEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccc
Confidence            45667776 44345999999999999999999999999 999997 5778888764      3446789999987666 4


Q ss_pred             cEEEec
Q 037818          193 DAIFMK  198 (199)
Q Consensus       193 D~~~l~  198 (199)
                      |+|+++
T Consensus       226 d~IisN  231 (300)
T COG2813         226 DLIISN  231 (300)
T ss_pred             cEEEeC
Confidence            888875

>PLN02244 tocopherol O-methyltransferase

Probab=98.18  E-value=4.8e-06  Score=69.93  Aligned_cols=65  Identities=23%  Similarity=0.248  Sum_probs=52.4

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-------CCCceEEeCCCCC-CCCcc--cEEEe
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-------ILGVTHIGGDTFK-SIPAA--DAIFM  197 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-------~~ri~~~~gd~f~-~~P~a--D~~~l  197 (199)
                      ....+|||||||+|.++..+++++ ..+ ++.+|+ |..++.+++       .++|+++.+|+.+ ++|.+  |+++.
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~-v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s  192 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY-GAN-VKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWS  192 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc-CCE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEE
Confidence            456799999999999999999988 678 999998 555665543       1689999999987 66653  98875

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=98.18  E-value=4.1e-06  Score=64.50  Aligned_cols=66  Identities=17%  Similarity=0.092  Sum_probs=53.4

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC-CCCc-ccEEEec
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK-SIPA-ADAIFMK  198 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~-~~P~-aD~~~l~  198 (199)
                      ...+|+|||||+|..+..+++++|..+ ++.+|. |..++.++++      ++++++.+|..+ +.+. .|+++++
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~~~-V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~  119 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPELK-VTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSR  119 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCCCe-EEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEc
Confidence            357999999999999999999999999 999998 6667666542      569999999876 2222 4999874

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.17  E-value=2.1e-06  Score=75.75  Aligned_cols=65  Identities=18%  Similarity=0.158  Sum_probs=55.7

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc--ccEEEec
Q 037818          133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA--ADAIFMK  198 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~--aD~~~l~  198 (199)
                      ..+|||||||+|.++..+++.+|+.+ ++.+|. |..++.|+++       +|++++.+|+++.++.  .|+++.+
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~-v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsN  213 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNAN-VIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSN  213 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCe-EEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEEC
Confidence            46899999999999999999999999 999998 7788887753       5899999999987654  3988863

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=98.17  E-value=4.1e-06  Score=66.90  Aligned_cols=65  Identities=23%  Similarity=0.318  Sum_probs=54.8

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCc--ccEEEe
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPA--ADAIFM  197 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~--aD~~~l  197 (199)
                      +..+|+|+|||+|.++..+++.+|+.+ ++.+|. |..++.++.+      ++++++.+|++++++.  .|+++.
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~  160 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKERPDAR-VTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVS  160 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEE
Confidence            346899999999999999999999999 999997 7777777642      5799999999987654  398875

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.17  E-value=5.2e-07  Score=61.88  Aligned_cols=61  Identities=21%  Similarity=0.242  Sum_probs=42.2

Q ss_pred             EEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC---------CCceEEeCCCCCCCCc--ccEEEec
Q 037818          137 VDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI---------LGVTHIGGDTFKSIPA--ADAIFMK  198 (199)
Q Consensus       137 vDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~---------~ri~~~~gd~f~~~P~--aD~~~l~  198 (199)
                      ||||||+|.++..+++++|..+ .+.+|. |..++.+++.         .++++...|.++..+.  -|++++.
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~-~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~   73 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDAR-YTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVAS   73 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEE-EEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE
T ss_pred             CEeCccChHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhh
Confidence            7999999999999999999999 999997 7888888764         2456666666654442  4999875

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.17  E-value=3.9e-06  Score=67.61  Aligned_cols=71  Identities=18%  Similarity=0.163  Sum_probs=53.8

Q ss_pred             HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC--CCCc-
Q 037818          123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK--SIPA-  191 (199)
Q Consensus       123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~--~~P~-  191 (199)
                      +++.++  .+..+|||||||+|.++..+++.  ..+ ++.+|. |+.++.|++.       ++++++.+|+.+  +.+. 
T Consensus        37 ~l~~l~--~~~~~vLDiGcG~G~~a~~la~~--g~~-v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~  111 (255)
T PRK11036         37 LLAELP--PRPLRVLDAGGGEGQTAIKLAEL--GHQ-VILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLET  111 (255)
T ss_pred             HHHhcC--CCCCEEEEeCCCchHHHHHHHHc--CCE-EEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCC
Confidence            444443  44579999999999999999987  356 889998 7888877642       578999999865  3433 


Q ss_pred             -ccEEEec
Q 037818          192 -ADAIFMK  198 (199)
Q Consensus       192 -aD~~~l~  198 (199)
                       .|++++.
T Consensus       112 ~fD~V~~~  119 (255)
T PRK11036        112 PVDLILFH  119 (255)
T ss_pred             CCCEEEeh
Confidence             4998864

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=98.17  E-value=2.9e-06  Score=66.75  Aligned_cols=63  Identities=21%  Similarity=0.274  Sum_probs=50.9

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-------CCCceEEeCCCCC-CCCc-ccEEEe
Q 037818          134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-------ILGVTHIGGDTFK-SIPA-ADAIFM  197 (199)
Q Consensus       134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-------~~ri~~~~gd~f~-~~P~-aD~~~l  197 (199)
                      ++|||||||+|.++..+++.+|+.+ ++.+|+ |..++.+++       .++++++.+|+.+ ++|. .|+++.
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~-v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~   73 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQ-LHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFG   73 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeeh
Confidence            4799999999999999999999999 999998 455555553       2689999999975 4555 388874

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=98.15  E-value=2.6e-06  Score=65.26  Aligned_cols=65  Identities=15%  Similarity=0.045  Sum_probs=51.1

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCCeeeeccch-HHHhcCCC------CCCceEEeCCCCCC-C-CcccEEEec
Q 037818          133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP-EVVGEAPS------ILGVTHIGGDTFKS-I-PAADAIFMK  198 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp-~v~~~a~~------~~ri~~~~gd~f~~-~-P~aD~~~l~  198 (199)
                      ..+|+|||||+|.++..+++.+|+.+ ++.+|.. ..++.+++      .++|+++.+|+.+- . +..|+++..
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~~~~-V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~  116 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARPELK-LTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSR  116 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCCCCe-EEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEeh
Confidence            47999999999999999999999999 9999985 44544432      25799999999762 2 224988764

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=98.14  E-value=2.6e-06  Score=65.94  Aligned_cols=66  Identities=14%  Similarity=0.246  Sum_probs=53.2

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC------CCCceEEeCCCCC---C-CCc--ccEEEec
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS------ILGVTHIGGDTFK---S-IPA--ADAIFMK  198 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~------~~ri~~~~gd~f~---~-~P~--aD~~~l~  198 (199)
                      ...++||||||+|.++..+++++|+.. ++.+|. +..++.+++      .++|+++.+|+.+   . +|.  .|.+++.
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~-v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~   94 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKN-FLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN   94 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCC-EEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence            447999999999999999999999999 999998 666666653      2689999999974   1 444  3777764

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.14  E-value=6.6e-06  Score=64.66  Aligned_cols=64  Identities=16%  Similarity=0.048  Sum_probs=49.4

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCcccEEEe
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPAADAIFM  197 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~aD~~~l  197 (199)
                      ....+|||||||+|.++..+++.  ..+ ++.+|. |+.++.+++.       +++++..+|+.+.....|+++.
T Consensus        54 ~~~~~vLDiGcG~G~~~~~la~~--~~~-v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~  125 (219)
T TIGR02021        54 LKGKRVLDAGCGTGLLSIELAKR--GAI-VKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVC  125 (219)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHC--CCE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEE
Confidence            34589999999999999999886  346 889997 6777777642       4899999998763333488765

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=98.13  E-value=6.1e-06  Score=69.32  Aligned_cols=75  Identities=17%  Similarity=0.173  Sum_probs=56.7

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCCCCCcc-cE
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFKSIPAA-DA  194 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~~~P~a-D~  194 (199)
                      .+++.++ -....+|+|+|||+|.++..+++++|+.+ ++.+|. +..++.++++     -..+++.+|.++..+.. |+
T Consensus       187 lLl~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~-v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDl  264 (342)
T PRK09489        187 LLLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIR-LTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDM  264 (342)
T ss_pred             HHHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccE
Confidence            3445454 22335899999999999999999999999 999998 5677766642     24577889998765554 99


Q ss_pred             EEec
Q 037818          195 IFMK  198 (199)
Q Consensus       195 ~~l~  198 (199)
                      ++.+
T Consensus       265 IvsN  268 (342)
T PRK09489        265 IISN  268 (342)
T ss_pred             EEEC
Confidence            8864

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=98.12  E-value=1.5e-05  Score=63.92  Aligned_cols=75  Identities=16%  Similarity=0.179  Sum_probs=56.2

Q ss_pred             HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-CCceEEeCCCCC-CCCc--ccE
Q 037818          120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-LGVTHIGGDTFK-SIPA--ADA  194 (199)
Q Consensus       120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-~ri~~~~gd~f~-~~P~--aD~  194 (199)
                      +..+++.++ .....+|||||||+|.++..+.+.  ..+ ++.+|+ |..++.+++. ..+.++.+|+.+ ++|.  .|+
T Consensus        31 a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~-v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~  106 (251)
T PRK10258         31 ADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRER--GSQ-VTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDL  106 (251)
T ss_pred             HHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHc--CCe-EEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEE
Confidence            344555555 445689999999999999888764  467 899998 7888888764 456788999876 5655  398


Q ss_pred             EEec
Q 037818          195 IFMK  198 (199)
Q Consensus       195 ~~l~  198 (199)
                      ++.+
T Consensus       107 V~s~  110 (251)
T PRK10258        107 AWSN  110 (251)
T ss_pred             EEEC
Confidence            8753

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=98.12  E-value=8e-06  Score=71.50  Aligned_cols=74  Identities=20%  Similarity=0.255  Sum_probs=57.8

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC-CCCc--c
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK-SIPA--A  192 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~-~~P~--a  192 (199)
                      .+++.++ .....+|||||||+|..+..+++.+ +.+ ++.+|+ |..++.|+++     .+++++.+|+++ ++|.  .
T Consensus       257 ~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~-v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~f  333 (475)
T PLN02336        257 EFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-DVH-VVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSF  333 (475)
T ss_pred             HHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-CCE-EEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCE
Confidence            3555555 5666899999999999999998876 778 999998 5666666532     589999999997 5665  3


Q ss_pred             cEEEec
Q 037818          193 DAIFMK  198 (199)
Q Consensus       193 D~~~l~  198 (199)
                      |+++..
T Consensus       334 D~I~s~  339 (475)
T PLN02336        334 DVIYSR  339 (475)
T ss_pred             EEEEEC
Confidence            998764

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=98.11  E-value=4.6e-06  Score=71.31  Aligned_cols=65  Identities=18%  Similarity=0.210  Sum_probs=55.2

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCCC-CCc---ccEEEec
Q 037818          133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFKS-IPA---ADAIFMK  198 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~~-~P~---aD~~~l~  198 (199)
                      ..+|+|||||+|.++..+++.+|..+ ++.+|. |..++.++++     .|++++.+|++++ .|.   .|+++.+
T Consensus       252 ~~rVLDLGcGSG~IaiaLA~~~p~a~-VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSN  326 (423)
T PRK14966        252 NGRVWDLGTGSGAVAVTVALERPDAF-VRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSN  326 (423)
T ss_pred             CCEEEEEeChhhHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEEC
Confidence            35899999999999999999999999 999998 8888888753     4799999999874 442   3988864

>PRK08317 hypothetical protein; Provisional

Probab=98.10  E-value=9.9e-06  Score=63.79  Aligned_cols=74  Identities=18%  Similarity=0.178  Sum_probs=57.6

Q ss_pred             HhhhCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCC-----CCCceEEeCCCCC-CCCc--c
Q 037818          123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPS-----ILGVTHIGGDTFK-SIPA--A  192 (199)
Q Consensus       123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~-----~~ri~~~~gd~f~-~~P~--a  192 (199)
                      +.+.++ .....+|||||||+|.++..+++.+ |..+ .+.+|. |..++.+++     ..++++..+|+.+ +++.  .
T Consensus        11 ~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~-v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~   88 (241)
T PRK08317         11 TFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGR-VVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF   88 (241)
T ss_pred             HHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcE-EEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence            445555 6667899999999999999999998 7888 999998 455565543     2679999999875 5554  3


Q ss_pred             cEEEec
Q 037818          193 DAIFMK  198 (199)
Q Consensus       193 D~~~l~  198 (199)
                      |++++.
T Consensus        89 D~v~~~   94 (241)
T PRK08317         89 DAVRSD   94 (241)
T ss_pred             eEEEEe
Confidence            988764

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=98.09  E-value=8.5e-06  Score=62.09  Aligned_cols=72  Identities=18%  Similarity=0.164  Sum_probs=58.9

Q ss_pred             hhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC---CCCcccE
Q 037818          125 DGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK---SIPAADA  194 (199)
Q Consensus       125 ~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~---~~P~aD~  194 (199)
                      ..+. .....+++|||||+|..+.+++..+|..+ ++-+|. ++.++..+++      ++++.+.||--+   .+|..|.
T Consensus        28 s~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~-v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~da  105 (187)
T COG2242          28 SKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGR-VIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDA  105 (187)
T ss_pred             HhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCce-EEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCE
Confidence            4554 66778999999999999999999999999 999996 6667666653      899999998775   3554599


Q ss_pred             EEec
Q 037818          195 IFMK  198 (199)
Q Consensus       195 ~~l~  198 (199)
                      +++.
T Consensus       106 iFIG  109 (187)
T COG2242         106 IFIG  109 (187)
T ss_pred             EEEC
Confidence            8874

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.08  E-value=6.7e-06  Score=64.84  Aligned_cols=65  Identities=23%  Similarity=0.305  Sum_probs=52.8

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC--CCceEEeCCCCC-CCCc--ccEEEec
Q 037818          133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI--LGVTHIGGDTFK-SIPA--ADAIFMK  198 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~--~ri~~~~gd~f~-~~P~--aD~~~l~  198 (199)
                      ..+|||||||+|.++..+++.+|+.+ ++.+|. |..++.+++.  ++++++.+|+.+ ++|.  .|+++..
T Consensus        35 ~~~vLDlG~G~G~~~~~l~~~~~~~~-~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~  105 (240)
T TIGR02072        35 PASVLDIGCGTGYLTRALLKRFPQAE-FIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSN  105 (240)
T ss_pred             CCeEEEECCCccHHHHHHHHhCCCCc-EEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEh
Confidence            37899999999999999999999999 999997 4555555543  589999999986 4444  3998864

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.07  E-value=1.6e-05  Score=62.81  Aligned_cols=75  Identities=13%  Similarity=0.169  Sum_probs=56.7

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC-CCCc
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK-SIPA  191 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~-~~P~  191 (199)
                      .++..+. .....+|+|||||+|.++..+++.+| +.+ ++++|. |..++.+++.       .++++..+|+.+ +.+.
T Consensus        42 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~  119 (239)
T PRK00216         42 KTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGE-VVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPD  119 (239)
T ss_pred             HHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCC
Confidence            3444444 44457999999999999999999998 788 999998 5566665542       579999999986 4443


Q ss_pred             --ccEEEec
Q 037818          192 --ADAIFMK  198 (199)
Q Consensus       192 --aD~~~l~  198 (199)
                        .|++++.
T Consensus       120 ~~~D~I~~~  128 (239)
T PRK00216        120 NSFDAVTIA  128 (239)
T ss_pred             CCccEEEEe
Confidence              3988764

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.07  E-value=7.6e-06  Score=65.91  Aligned_cols=65  Identities=22%  Similarity=0.189  Sum_probs=54.2

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC---CCceEEeCCCCCCCC----c-ccEEEec
Q 037818          133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI---LGVTHIGGDTFKSIP----A-ADAIFMK  198 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~---~ri~~~~gd~f~~~P----~-aD~~~l~  198 (199)
                      ..+++|+|||+|.++..+++..|..+ ++.+|. |..++.++++   .+++++.+|+++.++    . .|+++.+
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~-v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~N  160 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIE-LHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAAN  160 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEEC
Confidence            35899999999999999999999999 999998 8888888764   347899999987554    2 3888764

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=98.06  E-value=3.6e-06  Score=67.03  Aligned_cols=68  Identities=19%  Similarity=0.324  Sum_probs=47.8

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCC------CCCceEEeCCCCC-CCCcc--cEEEec
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPS------ILGVTHIGGDTFK-SIPAA--DAIFMK  198 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~------~~ri~~~~gd~f~-~~P~a--D~~~l~  198 (199)
                      .....+|||||||+|.++..+++.. |+.+ ++.+|. |..++.+++      ..+|+++.+|..+ |+|..  |++++.
T Consensus        45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~-v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~  123 (233)
T PF01209_consen   45 LRPGDRVLDVACGTGDVTRELARRVGPNGK-VVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCS  123 (233)
T ss_dssp             --S--EEEEET-TTSHHHHHHGGGSS---E-EEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEE
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHCCCccE-EEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHH
Confidence            3455799999999999999999875 6788 999997 677888764      2689999999987 78873  999875

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.06  E-value=1.2e-05  Score=60.73  Aligned_cols=73  Identities=14%  Similarity=0.253  Sum_probs=55.4

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccch-HHHhcCCC----CCCceEEeCCCCC-CCCc--c
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP-EVVGEAPS----ILGVTHIGGDTFK-SIPA--A  192 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp-~v~~~a~~----~~ri~~~~gd~f~-~~P~--a  192 (199)
                      ..+++.++ +....+++|||||+|.++..++++  ..+ ++.+|.. ..++.+++    .++++++.+|+++ +.+.  .
T Consensus         3 ~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~--~~~-v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~   78 (169)
T smart00650        3 DKIVRAAN-LRPGDTVLEIGPGKGALTEELLER--AAR-VTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQP   78 (169)
T ss_pred             HHHHHhcC-CCCcCEEEEECCCccHHHHHHHhc--CCe-EEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCC
Confidence            35666776 777789999999999999999998  457 8899974 45555543    3689999999997 4554  3


Q ss_pred             cEEEe
Q 037818          193 DAIFM  197 (199)
Q Consensus       193 D~~~l  197 (199)
                      |.++.
T Consensus        79 d~vi~   83 (169)
T smart00650       79 YKVVG   83 (169)
T ss_pred             CEEEE
Confidence            76654

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.06  E-value=1.1e-05  Score=65.31  Aligned_cols=67  Identities=22%  Similarity=0.317  Sum_probs=55.2

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCc--ccEEEe
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPA--ADAIFM  197 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~--aD~~~l  197 (199)
                      ..+..+|+|+|||+|.++..+++..|..+ ++.+|. |..++.++++      .+++++.+|++++.+.  .|+++.
T Consensus       106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~-v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~  181 (275)
T PRK09328        106 LKEPLRVLDLGTGSGAIALALAKERPDAE-VTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVS  181 (275)
T ss_pred             ccCCCEEEEEcCcHHHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEE
Confidence            34557999999999999999999999999 999997 5666666542      6899999999987653  498875

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=98.05  E-value=1.5e-05  Score=64.49  Aligned_cols=68  Identities=24%  Similarity=0.213  Sum_probs=54.2

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCC---------CCCceEEeCCCCC-CCCc--ccEE
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPS---------ILGVTHIGGDTFK-SIPA--ADAI  195 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~---------~~ri~~~~gd~f~-~~P~--aD~~  195 (199)
                      .....+|||||||+|.++..+++.+ |+.+ ++.+|. |+.++.|++         .++|+++.+|..+ |+|.  .|++
T Consensus        71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~-V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V  149 (261)
T PLN02233         71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGK-VMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAI  149 (261)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEE
Confidence            4455799999999999999999875 6778 999998 666776643         2589999999986 6776  3998


Q ss_pred             Eec
Q 037818          196 FMK  198 (199)
Q Consensus       196 ~l~  198 (199)
                      ++.
T Consensus       150 ~~~  152 (261)
T PLN02233        150 TMG  152 (261)
T ss_pred             EEe
Confidence            764

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.05  E-value=2.9e-06  Score=58.44  Aligned_cols=61  Identities=20%  Similarity=0.290  Sum_probs=46.7

Q ss_pred             EEEecCCccHHHHHHHHHC---CCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC-CCCc--ccEEEe
Q 037818          136 LVDVGGSAGDCLRMILQKH---RFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK-SIPA--ADAIFM  197 (199)
Q Consensus       136 vvDvGGG~G~~~~~l~~~~---P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~-~~P~--aD~~~l  197 (199)
                      |||+|||+|...+.+++.+   |+.+ .+.+|+ |+.++.+++.     .+++++.+|+.+ +++.  .|+|+.
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~-~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~   73 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSR-VIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVC   73 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SE-EEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccce-EEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEE
Confidence            7999999999999999997   6678 999996 6777777642     589999999976 3333  499886

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.05  E-value=1.7e-05  Score=62.20  Aligned_cols=76  Identities=16%  Similarity=0.196  Sum_probs=58.3

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCc-
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPA-  191 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~-  191 (199)
                      ..+++.++ .....+|||||||+|.++..+++.. ++.+ ++.+|. |..++.++++      ++|+++.+|.++..+. 
T Consensus        66 ~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~-V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~  143 (212)
T PRK13942         66 AIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGK-VVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEEN  143 (212)
T ss_pred             HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcC
Confidence            34556666 6777899999999999999888875 4467 888996 6777777652      6899999999875433 


Q ss_pred             --ccEEEec
Q 037818          192 --ADAIFMK  198 (199)
Q Consensus       192 --aD~~~l~  198 (199)
                        -|+|++.
T Consensus       144 ~~fD~I~~~  152 (212)
T PRK13942        144 APYDRIYVT  152 (212)
T ss_pred             CCcCEEEEC
Confidence              3998764

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=98.03  E-value=1.5e-05  Score=62.58  Aligned_cols=76  Identities=16%  Similarity=0.168  Sum_probs=58.3

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCc-
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPA-  191 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~-  191 (199)
                      ..+++.++ .....+|||||||+|.++..+++..+ +.+ ++.+|. |+.++.|+++      ++++++.+|..+..+. 
T Consensus        67 ~~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~-V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~  144 (215)
T TIGR00080        67 AMMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGL-VVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPL  144 (215)
T ss_pred             HHHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCccc
Confidence            34556666 66678999999999999999999875 466 888885 7777777642      6899999999874332 


Q ss_pred             --ccEEEec
Q 037818          192 --ADAIFMK  198 (199)
Q Consensus       192 --aD~~~l~  198 (199)
                        -|++++.
T Consensus       145 ~~fD~Ii~~  153 (215)
T TIGR00080       145 APYDRIYVT  153 (215)
T ss_pred             CCCCEEEEc
Confidence              3988864

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=98.02  E-value=1.5e-05  Score=62.31  Aligned_cols=74  Identities=16%  Similarity=0.118  Sum_probs=57.1

Q ss_pred             HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCC-CCeeeeccc-hHHHhcCCC----CCCceEEeCCCCC-CCCc--cc
Q 037818          123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVGEAPS----ILGVTHIGGDTFK-SIPA--AD  193 (199)
Q Consensus       123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~~v~Dl-p~v~~~a~~----~~ri~~~~gd~f~-~~P~--aD  193 (199)
                      +++... .....+|+|+|||.|.++..+++.+|. .+ .+.+|. |..++.+++    .++++++.+|+.+ +.+.  .|
T Consensus        31 ~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~-~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D  108 (223)
T TIGR01934        31 AVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGK-VTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFD  108 (223)
T ss_pred             HHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCce-EEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEE
Confidence            344444 445689999999999999999999998 77 999998 566666554    2689999999987 4544  38


Q ss_pred             EEEec
Q 037818          194 AIFMK  198 (199)
Q Consensus       194 ~~~l~  198 (199)
                      ++++.
T Consensus       109 ~i~~~  113 (223)
T TIGR01934       109 AVTIA  113 (223)
T ss_pred             EEEEe
Confidence            88753

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=98.01  E-value=1.6e-05  Score=66.64  Aligned_cols=66  Identities=24%  Similarity=0.236  Sum_probs=54.7

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC---CCceEEeCCCCC-CCCc--ccEEEec
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI---LGVTHIGGDTFK-SIPA--ADAIFMK  198 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~---~ri~~~~gd~f~-~~P~--aD~~~l~  198 (199)
                      ...+|||||||+|.++..+++..|..+ ++++|. |..++.+++.   .+++++.+|+.+ +++.  .|+|++.
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~~~~-VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~  185 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVDAKN-VTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSA  185 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEc
Confidence            346999999999999999999999888 999998 6777777653   689999999986 5655  3988764

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.01  E-value=1.2e-05  Score=68.26  Aligned_cols=74  Identities=18%  Similarity=0.222  Sum_probs=55.1

Q ss_pred             HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC------CCCceEEeCCCC---CCCCcc
Q 037818          123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS------ILGVTHIGGDTF---KSIPAA  192 (199)
Q Consensus       123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~------~~ri~~~~gd~f---~~~P~a  192 (199)
                      +++.+. -.....+||||||+|.++..+++++|+.. ++.+|. +..++.+.+      .++|.++.+|..   +.+|.+
T Consensus       114 ~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~-~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~  191 (390)
T PRK14121        114 FLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKL-FIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN  191 (390)
T ss_pred             HHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCC-EEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence            344443 23447999999999999999999999999 999997 455554432      268999999973   356653


Q ss_pred             --cEEEec
Q 037818          193 --DAIFMK  198 (199)
Q Consensus       193 --D~~~l~  198 (199)
                        |.+++.
T Consensus       192 s~D~I~ln  199 (390)
T PRK14121        192 SVEKIFVH  199 (390)
T ss_pred             ceeEEEEe
Confidence              877764

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.00  E-value=8.9e-06  Score=54.53  Aligned_cols=60  Identities=22%  Similarity=0.361  Sum_probs=47.7

Q ss_pred             EEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC---CCCceEEeCCCCC-CCCcc--cEEEec
Q 037818          137 VDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS---ILGVTHIGGDTFK-SIPAA--DAIFMK  198 (199)
Q Consensus       137 vDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~---~~ri~~~~gd~f~-~~P~a--D~~~l~  198 (199)
                      ||||||+|..+..++++ +..+ .+.+|. +..++.+++   ..++++..+|+.+ ++|..  |+++..
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~-v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~   67 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGAS-VTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSN   67 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCE-EEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEE
T ss_pred             CEecCcCCHHHHHHHhc-cCCE-EEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccc
Confidence            79999999999999999 8888 999998 455666664   3667799999987 77763  998865

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.00  E-value=8.7e-06  Score=63.41  Aligned_cols=65  Identities=20%  Similarity=0.320  Sum_probs=52.2

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC------CCCceEEeCCCCC--C--CCc--ccEEEe
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS------ILGVTHIGGDTFK--S--IPA--ADAIFM  197 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~------~~ri~~~~gd~f~--~--~P~--aD~~~l  197 (199)
                      ...+|||||||+|.++..+++.+|+.+ .+.+|. |+.++.+++      .++++++.+|+.+  +  ++.  .|++++
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~-v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~  117 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDIN-FIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYL  117 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCcc-EEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEE
Confidence            457999999999999999999999999 999998 667776653      2689999999932  2  443  387775

>PRK07402 precorrin-6B methylase; Provisional

Probab=97.99  E-value=8.2e-06  Score=63.11  Aligned_cols=63  Identities=17%  Similarity=0.054  Sum_probs=52.1

Q ss_pred             HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC
Q 037818          123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK  187 (199)
Q Consensus       123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~  187 (199)
                      +...++ .....+|+|+|||+|.++..+++..|..+ ++.+|. |..++.++++      ++++++.+|..+
T Consensus        32 l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~-V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~  101 (196)
T PRK07402         32 LISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGR-VIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPE  101 (196)
T ss_pred             HHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHH
Confidence            445555 55668999999999999999999999988 999998 8888877642      679999998864

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=97.98  E-value=1.4e-05  Score=64.98  Aligned_cols=65  Identities=18%  Similarity=0.176  Sum_probs=52.7

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCC---Ceeeeccc-hHHHhcCCCC-CCceEEeCCCCC-CCCc--ccEEEe
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFI---CEGINFDL-PEVVGEAPSI-LGVTHIGGDTFK-SIPA--ADAIFM  197 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l---~~~~v~Dl-p~v~~~a~~~-~ri~~~~gd~f~-~~P~--aD~~~l  197 (199)
                      ...+|||||||+|.++..+++.+|..   + ++.+|+ |..++.|++. +++++..+|..+ |++.  .|+++.
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~-v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~  157 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQ-LFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIR  157 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCe-EEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEE
Confidence            44789999999999999999998865   5 799997 6777777654 789999999887 6665  388863

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=97.97  E-value=2e-05  Score=63.68  Aligned_cols=73  Identities=12%  Similarity=0.175  Sum_probs=55.1

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccch-HHHhcCCC----CCCceEEeCCCCC-CCCcccE
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP-EVVGEAPS----ILGVTHIGGDTFK-SIPAADA  194 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp-~v~~~a~~----~~ri~~~~gd~f~-~~P~aD~  194 (199)
                      ..+++..+ .....+|+|||||+|.++..++++.  .+ ++.+|.. ..++.+++    .++++++.+|+++ ++|..|.
T Consensus        19 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~--~~-v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~   94 (258)
T PRK14896         19 DRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRA--KK-VYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNK   94 (258)
T ss_pred             HHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhC--CE-EEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceE
Confidence            45556665 5566899999999999999999984  46 8888874 45554443    3789999999997 6666676


Q ss_pred             EEe
Q 037818          195 IFM  197 (199)
Q Consensus       195 ~~l  197 (199)
                      ++.
T Consensus        95 Vv~   97 (258)
T PRK14896         95 VVS   97 (258)
T ss_pred             EEE
Confidence            654

>PRK06202 hypothetical protein; Provisional

Probab=97.96  E-value=5.5e-05  Score=60.01  Aligned_cols=67  Identities=19%  Similarity=0.118  Sum_probs=48.1

Q ss_pred             CCcceEEEecCCccHHHHHHHHH----CCCCCeeeeccc-hHHHhcCCCC---CCceEEeCCC--CCCCCc-ccEEEec
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQK----HRFICEGINFDL-PEVVGEAPSI---LGVTHIGGDT--FKSIPA-ADAIFMK  198 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~----~P~l~~~~v~Dl-p~v~~~a~~~---~ri~~~~gd~--f~~~P~-aD~~~l~  198 (199)
                      .+..+|+|||||+|.++..+++.    .|+.+ .+.+|+ |..++.+++.   .++++..+|.  +...+. .|++++.
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~  136 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLE-VTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSN  136 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcE-EEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEEC
Confidence            45679999999999999888764    56788 999998 7888887754   4566555433  222222 4998875

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=97.95  E-value=2.3e-05  Score=63.88  Aligned_cols=66  Identities=14%  Similarity=0.237  Sum_probs=51.3

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC---CCceEEeCCCCC-CCC
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI---LGVTHIGGDTFK-SIP  190 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~---~ri~~~~gd~f~-~~P  190 (199)
                      ..+++.++ .....+|+|||||+|.++..++++.+  + ++.+|. |..++.+++.   ++++++.+|+.+ +++
T Consensus        32 ~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~-v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~  102 (272)
T PRK00274         32 DKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAA--K-VTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLS  102 (272)
T ss_pred             HHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCC--c-EEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHH
Confidence            34556666 66668999999999999999999987  6 778886 5666665542   689999999986 444

>PLN02366 spermidine synthase

Probab=97.93  E-value=1.3e-05  Score=66.28  Aligned_cols=66  Identities=24%  Similarity=0.266  Sum_probs=51.4

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccch-HHHhcCCC----------CCCceEEeCCCCC---CCCc--ccE
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP-EVVGEAPS----------ILGVTHIGGDTFK---SIPA--ADA  194 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp-~v~~~a~~----------~~ri~~~~gd~f~---~~P~--aD~  194 (199)
                      .+.++||+||||.|..++++++. |...+++++|+. .|++.+++          .+|++++.+|.++   ..|.  -|+
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv  168 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA  168 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence            56789999999999999999865 765448999984 57887765          2699999999753   3443  399


Q ss_pred             EEe
Q 037818          195 IFM  197 (199)
Q Consensus       195 ~~l  197 (199)
                      |++
T Consensus       169 Ii~  171 (308)
T PLN02366        169 IIV  171 (308)
T ss_pred             EEE
Confidence            886

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.93  E-value=3.2e-05  Score=60.30  Aligned_cols=75  Identities=15%  Similarity=0.054  Sum_probs=55.8

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc-
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA-  191 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~-  191 (199)
                      .+++.++ .....+|||||||+|.++..+++..+ .-+ ++.+|. |+.++.++++       ++++++.+|..+.+|. 
T Consensus        63 ~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~-V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~  140 (205)
T PRK13944         63 MMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGK-VYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKH  140 (205)
T ss_pred             HHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccC
Confidence            3445554 45557999999999999999998875 456 899997 6666666542       4699999999875543 


Q ss_pred             --ccEEEec
Q 037818          192 --ADAIFMK  198 (199)
Q Consensus       192 --aD~~~l~  198 (199)
                        .|++++.
T Consensus       141 ~~fD~Ii~~  149 (205)
T PRK13944        141 APFDAIIVT  149 (205)
T ss_pred             CCccEEEEc
Confidence              3988764

>PLN03075 nicotianamine synthase; Provisional

Probab=97.93  E-value=2.3e-05  Score=64.30  Aligned_cols=67  Identities=15%  Similarity=0.109  Sum_probs=51.1

Q ss_pred             CCcceEEEecCCccHH--HHHHHHHCCCCCeeeeccc-hHHHhcCCC--------CCCceEEeCCCCCCCC--c-ccEEE
Q 037818          131 KGVKQLVDVGGSAGDC--LRMILQKHRFICEGINFDL-PEVVGEAPS--------ILGVTHIGGDTFKSIP--A-ADAIF  196 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~--~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~--------~~ri~~~~gd~f~~~P--~-aD~~~  196 (199)
                      .+.++|+|||||.|-+  ...+.+.+|+.+ ++.+|. |+.++.|++        .+||+|..+|..+..+  . -|+|+
T Consensus       122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~-~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF  200 (296)
T PLN03075        122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTS-FHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVF  200 (296)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEE
Confidence            3679999999999854  334446789999 999998 677776664        2689999999987433  2 39998


Q ss_pred             ec
Q 037818          197 MK  198 (199)
Q Consensus       197 l~  198 (199)
                      +.
T Consensus       201 ~~  202 (296)
T PLN03075        201 LA  202 (296)
T ss_pred             Ee
Confidence            64

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=97.91  E-value=7.9e-06  Score=57.47  Aligned_cols=63  Identities=27%  Similarity=0.304  Sum_probs=51.4

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-------CCCceEEeCCCCC---CCCc--ccEEEec
Q 037818          134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-------ILGVTHIGGDTFK---SIPA--ADAIFMK  198 (199)
Q Consensus       134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-------~~ri~~~~gd~f~---~~P~--aD~~~l~  198 (199)
                      .+|+|+|||+|.++..+++.. ..+ ++.+|+ |..++.++.       .+|++++.+|+++   ..+.  .|+++++
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~-~~~-~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n   77 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRG-AAR-VTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTN   77 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHC-TCE-EEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred             CEEEEcCcchHHHHHHHHHHC-CCe-EEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEEC
Confidence            489999999999999999999 777 999998 677777664       2789999999986   2444  3998874

...

>PHA03411 putative methyltransferase; Provisional

Probab=97.90  E-value=2.1e-05  Score=63.80  Aligned_cols=65  Identities=15%  Similarity=0.190  Sum_probs=54.1

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-CCceEEeCCCCCCCC-c-ccEEEec
Q 037818          133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-LGVTHIGGDTFKSIP-A-ADAIFMK  198 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-~ri~~~~gd~f~~~P-~-aD~~~l~  198 (199)
                      ..+|||+|||+|.++..++++.+..+ ++.+|+ |..++.++++ ++++++.+|+++... . .|+++.+
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~~~~-V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsN  133 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCKPEK-IVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISN  133 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEc
Confidence            36899999999999999999988888 999997 7777777764 789999999997432 3 4998864

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=97.90  E-value=1.9e-05  Score=60.16  Aligned_cols=63  Identities=22%  Similarity=0.390  Sum_probs=50.9

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCCCCCc-ccEEEec
Q 037818          133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFKSIPA-ADAIFMK  198 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~~~P~-aD~~~l~  198 (199)
                      ..+|+|+|||+|.++..+.+..+  + ++.+|+ |..++.++++     -+++++.+|.++..+. .|+++.+
T Consensus        20 ~~~vLdlG~G~G~~~~~l~~~~~--~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n   89 (179)
T TIGR00537        20 PDDVLEIGAGTGLVAIRLKGKGK--C-ILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFN   89 (179)
T ss_pred             CCeEEEeCCChhHHHHHHHhcCC--E-EEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEEC
Confidence            36899999999999999999987  7 889997 7777777653     4688899999874443 4988764

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=97.87  E-value=2.6e-05  Score=62.05  Aligned_cols=65  Identities=22%  Similarity=0.257  Sum_probs=55.6

Q ss_pred             cceEEEecCCccHHHHHHHHHCCC------CCeeeeccc-hHHHhcCCCC---------CCceEEeCCCCC-CCCc--cc
Q 037818          133 VKQLVDVGGSAGDCLRMILQKHRF------ICEGINFDL-PEVVGEAPSI---------LGVTHIGGDTFK-SIPA--AD  193 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~P~------l~~~~v~Dl-p~v~~~a~~~---------~ri~~~~gd~f~-~~P~--aD  193 (199)
                      .-++|||+||+|..+..+++.-++      .+ ++++|. |+.++.+++.         .|+.++.+|--+ |+|.  .|
T Consensus       101 ~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~-V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D  179 (296)
T KOG1540|consen  101 GMKVLDVAGGTGDIAFRILRHVKSQFGDRESK-VTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFD  179 (296)
T ss_pred             CCeEEEecCCcchhHHHHHHhhccccCCCCce-EEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcce
Confidence            379999999999999999999999      66 999997 8888777542         569999999987 8888  49


Q ss_pred             EEEec
Q 037818          194 AIFMK  198 (199)
Q Consensus       194 ~~~l~  198 (199)
                      +|.+.
T Consensus       180 ~yTia  184 (296)
T KOG1540|consen  180 AYTIA  184 (296)
T ss_pred             eEEEe
Confidence            99885

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=97.85  E-value=1.4e-05  Score=63.75  Aligned_cols=75  Identities=16%  Similarity=0.180  Sum_probs=57.3

Q ss_pred             HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccch-HHHhcCCCC-------CCceEEeCCCCCC---CCc
Q 037818          123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP-EVVGEAPSI-------LGVTHIGGDTFKS---IPA  191 (199)
Q Consensus       123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp-~v~~~a~~~-------~ri~~~~gd~f~~---~P~  191 (199)
                      ++..|.......+|+|+|+|.|..+..++++.++.+ .+.+++. +..+.|+++       +||+++..|+-+-   .+.
T Consensus        35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~-I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~  113 (248)
T COG4123          35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAK-IVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVF  113 (248)
T ss_pred             HHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCc-EEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccc
Confidence            344442134478999999999999999999999999 9999984 455566542       8999999999862   333


Q ss_pred             c--cEEEec
Q 037818          192 A--DAIFMK  198 (199)
Q Consensus       192 a--D~~~l~  198 (199)
                      +  |+|+++
T Consensus       114 ~~fD~Ii~N  122 (248)
T COG4123         114 ASFDLIICN  122 (248)
T ss_pred             cccCEEEeC
Confidence            3  888875

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=97.82  E-value=0.0001  Score=57.70  Aligned_cols=71  Identities=18%  Similarity=0.241  Sum_probs=52.2

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccchHHHhcCCCCCCceEEeCCCCCC---------CCc
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDLPEVVGEAPSILGVTHIGGDTFKS---------IPA  191 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dlp~v~~~a~~~~ri~~~~gd~f~~---------~P~  191 (199)
                      .+.+.|..+....+|||||||+|.++..++++. |..+ ++.+|+-+.    ...++++++.+|+.+.         .+.
T Consensus        41 ~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~-V~aVDi~~~----~~~~~v~~i~~D~~~~~~~~~i~~~~~~  115 (209)
T PRK11188         41 EIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGR-VIACDILPM----DPIVGVDFLQGDFRDELVLKALLERVGD  115 (209)
T ss_pred             HHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCce-EEEEecccc----cCCCCcEEEecCCCChHHHHHHHHHhCC
Confidence            344445434566799999999999999999987 4567 999998652    2236799999999873         333


Q ss_pred             --ccEEEe
Q 037818          192 --ADAIFM  197 (199)
Q Consensus       192 --aD~~~l  197 (199)
                        .|+++.
T Consensus       116 ~~~D~V~S  123 (209)
T PRK11188        116 SKVQVVMS  123 (209)
T ss_pred             CCCCEEec
Confidence              388874

>PRK05785 hypothetical protein; Provisional

Probab=97.80  E-value=4.3e-05  Score=60.60  Aligned_cols=62  Identities=11%  Similarity=0.115  Sum_probs=49.6

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCCCCceEEeCCCCC-CCCcc--cEEEec
Q 037818          133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSILGVTHIGGDTFK-SIPAA--DAIFMK  198 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~~ri~~~~gd~f~-~~P~a--D~~~l~  198 (199)
                      ..+|||||||+|.++..+++.+ ..+ ++.+|. |+.++.+++.  ..++.+|+.+ |+|..  |++++.
T Consensus        52 ~~~VLDlGcGtG~~~~~l~~~~-~~~-v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~  117 (226)
T PRK05785         52 PKKVLDVAAGKGELSYHFKKVF-KYY-VVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSS  117 (226)
T ss_pred             CCeEEEEcCCCCHHHHHHHHhc-CCE-EEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEec
Confidence            5799999999999999999988 567 999998 7778887753  3466788876 66663  988864

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=97.77  E-value=5.4e-05  Score=61.45  Aligned_cols=68  Identities=19%  Similarity=0.219  Sum_probs=53.8

Q ss_pred             CCCcceEEEecCCccHHHHHHHHH-CCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC-CCCc--ccEEEec
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQK-HRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK-SIPA--ADAIFMK  198 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~-~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~-~~P~--aD~~~l~  198 (199)
                      .....+|||||||+|..+..+++. .|+.+ ++.+|. |..++.++++      +++++..+|+.+ ++|.  .|+++..
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~-v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~  153 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGK-VIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISN  153 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCE-EEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEc
Confidence            455689999999999988877776 46678 999997 7888887752      689999999876 5655  3888753

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=97.74  E-value=0.00013  Score=60.89  Aligned_cols=72  Identities=15%  Similarity=0.122  Sum_probs=50.5

Q ss_pred             hhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHH-HhcC-------CCCCCceEEeCCCCC-CCCcc-c
Q 037818          124 LDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEV-VGEA-------PSILGVTHIGGDTFK-SIPAA-D  193 (199)
Q Consensus       124 ~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v-~~~a-------~~~~ri~~~~gd~f~-~~P~a-D  193 (199)
                      ...++... .++|||||||+|.++..+++..|. + ++.+|.... +..+       ....+|+++.+|+.+ +.+.. |
T Consensus       115 ~~~l~~l~-g~~VLDIGCG~G~~~~~la~~g~~-~-V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD  191 (322)
T PRK15068        115 LPHLSPLK-GRTVLDVGCGNGYHMWRMLGAGAK-L-VVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFD  191 (322)
T ss_pred             HHhhCCCC-CCEEEEeccCCcHHHHHHHHcCCC-E-EEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcC
Confidence            34443133 489999999999999999999876 6 899996432 2211       113589999999875 44444 9


Q ss_pred             EEEec
Q 037818          194 AIFMK  198 (199)
Q Consensus       194 ~~~l~  198 (199)
                      +++..
T Consensus       192 ~V~s~  196 (322)
T PRK15068        192 TVFSM  196 (322)
T ss_pred             EEEEC
Confidence            88753

>PRK00811 spermidine synthase; Provisional

Probab=97.74  E-value=3.2e-05  Score=63.37  Aligned_cols=66  Identities=23%  Similarity=0.266  Sum_probs=51.7

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-----------CCCceEEeCCCCCCC--Cc--ccE
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-----------ILGVTHIGGDTFKSI--PA--ADA  194 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-----------~~ri~~~~gd~f~~~--P~--aD~  194 (199)
                      .+.++||+||||.|..++++++..+..+ ++++|+ |.+++.+++           .+|++++.+|..+-+  +.  -|+
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~-V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDv  153 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEK-ITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDV  153 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCE-EEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccE
Confidence            4568999999999999999997544456 999998 777877764           378999999987632  22  399


Q ss_pred             EEe
Q 037818          195 IFM  197 (199)
Q Consensus       195 ~~l  197 (199)
                      |++
T Consensus       154 Ii~  156 (283)
T PRK00811        154 IIV  156 (283)
T ss_pred             EEE
Confidence            886

>TIGR00755 ksgA dimethyladenosine transferase

Probab=97.73  E-value=7.8e-05  Score=60.03  Aligned_cols=69  Identities=14%  Similarity=0.278  Sum_probs=51.2

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----CCCceEEeCCCCC-CCCccc
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----ILGVTHIGGDTFK-SIPAAD  193 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----~~ri~~~~gd~f~-~~P~aD  193 (199)
                      ..+++..+ ..+..+|+|||||+|.++..++++.+.   ++.+|. +..++.+++    .++++++.+|+.+ +++..|
T Consensus        19 ~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~~---v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d   93 (253)
T TIGR00755        19 QKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAKK---VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFP   93 (253)
T ss_pred             HHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCCc---EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcC
Confidence            45666666 677789999999999999999999974   556675 344444432    3789999999987 455434

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK14968 putative methyltransferase; Provisional

Probab=97.71  E-value=7.1e-05  Score=56.94  Aligned_cols=65  Identities=22%  Similarity=0.236  Sum_probs=51.2

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CC-ceEEeCCCCCCCCc--ccEEEec
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LG-VTHIGGDTFKSIPA--ADAIFMK  198 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~r-i~~~~gd~f~~~P~--aD~~~l~  198 (199)
                      .+.++++|+|||+|.++..+++.  ..+ ++.+|. |.+++.++++       ++ ++++.+|++++++.  .|+++++
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n   97 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKN--GKK-VVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFN   97 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhh--cce-EEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEEC
Confidence            34578999999999999999998  577 899998 6677766532       23 89999999987665  4888753

>TIGR00477 tehB tellurite resistance protein TehB

Probab=97.70  E-value=8.1e-05  Score=57.60  Aligned_cols=74  Identities=15%  Similarity=0.106  Sum_probs=52.2

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC-CCCc-c
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK-SIPA-A  192 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~-~~P~-a  192 (199)
                      ..+.+.++ .....+|||||||+|.++..++++  ..+ ++.+|. |..++.+++.     -++++..+|+.. +++. .
T Consensus        20 ~~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~--g~~-V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~f   95 (195)
T TIGR00477        20 SAVREAVK-TVAPCKTLDLGCGQGRNSLYLSLA--GYD-VRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDY   95 (195)
T ss_pred             HHHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHC--CCe-EEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCC
Confidence            34555555 444579999999999999999985  467 999998 6667665432     237777788764 3444 4


Q ss_pred             cEEEec
Q 037818          193 DAIFMK  198 (199)
Q Consensus       193 D~~~l~  198 (199)
                      |+++..
T Consensus        96 D~I~~~  101 (195)
T TIGR00477        96 DFIFST  101 (195)
T ss_pred             CEEEEe
Confidence            888653

Part of a tellurite-reducing operon tehA and tehB

>PHA03412 putative methyltransferase; Provisional

Probab=97.70  E-value=7.3e-05  Score=59.36  Aligned_cols=65  Identities=14%  Similarity=0.088  Sum_probs=52.8

Q ss_pred             cceEEEecCCccHHHHHHHHHC---CCCCeeeeccc-hHHHhcCCCC-CCceEEeCCCCC-CCCc-ccEEEec
Q 037818          133 VKQLVDVGGSAGDCLRMILQKH---RFICEGINFDL-PEVVGEAPSI-LGVTHIGGDTFK-SIPA-ADAIFMK  198 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~---P~l~~~~v~Dl-p~v~~~a~~~-~ri~~~~gd~f~-~~P~-aD~~~l~  198 (199)
                      ..+|||+|||+|.++..++++.   +..+ ++.+|+ |..++.|+++ .++.++.+|++. +.+. .|+|+.+
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~-V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsN  121 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPRE-IVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISN  121 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcE-EEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEEC
Confidence            4699999999999999999875   4667 899998 6777788765 789999999986 3333 4998864

>PRK14967 putative methyltransferase; Provisional

Probab=97.70  E-value=7e-05  Score=59.13  Aligned_cols=67  Identities=13%  Similarity=0.082  Sum_probs=50.9

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCCCCCc--ccEEEec
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFKSIPA--ADAIFMK  198 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~~~P~--aD~~~l~  198 (199)
                      .....+|+|+|||+|.++..+++. +..+ ++.+|. |..++.++++     -+++++.+|+++.++.  .|+++++
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~-v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~n  108 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAA-GAGS-VTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSN  108 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHc-CCCe-EEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEEC
Confidence            444579999999999999998876 3347 899997 5666665542     3588999999876554  3998864

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.64  E-value=8.2e-05  Score=57.65  Aligned_cols=71  Identities=14%  Similarity=0.113  Sum_probs=54.7

Q ss_pred             hhCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCC---C-Cc
Q 037818          125 DGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKS---I-PA  191 (199)
Q Consensus       125 ~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~---~-P~  191 (199)
                      ..++ .....+|+|+|||+|.++..+++.. |..+ ++.+|. |..++.++++       ++++++.+|+.+.   . +.
T Consensus        34 ~~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~-v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~  111 (198)
T PRK00377         34 SKLR-LRKGDMILDIGCGTGSVTVEASLLVGETGK-VYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEK  111 (198)
T ss_pred             HHcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCC
Confidence            4455 6666899999999999999998874 6678 999998 7777766542       5789999998752   2 22


Q ss_pred             ccEEEe
Q 037818          192 ADAIFM  197 (199)
Q Consensus       192 aD~~~l  197 (199)
                      .|++++
T Consensus       112 ~D~V~~  117 (198)
T PRK00377        112 FDRIFI  117 (198)
T ss_pred             CCEEEE
Confidence            588886

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=97.63  E-value=0.00012  Score=57.73  Aligned_cols=64  Identities=20%  Similarity=0.218  Sum_probs=47.8

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc-ccEEEe
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA-ADAIFM  197 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~-aD~~~l  197 (199)
                      .....+|||||||+|.++..+++..  .+ ++.+|. |..++.+++.       +++.+..+| ++..+. .|+++.
T Consensus        61 ~~~~~~vLDvGcG~G~~~~~l~~~~--~~-v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d-~~~~~~~fD~v~~  133 (230)
T PRK07580         61 DLTGLRILDAGCGVGSLSIPLARRG--AK-VVASDISPQMVEEARERAPEAGLAGNITFEVGD-LESLLGRFDTVVC  133 (230)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHcC--CE-EEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC-chhccCCcCEEEE
Confidence            3445799999999999999999875  45 789997 6667776642       589999999 443223 488765

>PRK01581 speE spermidine synthase; Validated

Probab=97.62  E-value=5.4e-05  Score=63.74  Aligned_cols=68  Identities=21%  Similarity=0.197  Sum_probs=52.7

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-------------CCCceEEeCCCCCCC---Ccc
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-------------ILGVTHIGGDTFKSI---PAA  192 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-------------~~ri~~~~gd~f~~~---P~a  192 (199)
                      ..+.++||+||||.|..++++++..|-.+ ++++|+ |++++.|+.             .+|++++.+|-++-+   +..
T Consensus       148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~-It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~  226 (374)
T PRK01581        148 VIDPKRVLILGGGDGLALREVLKYETVLH-VDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSL  226 (374)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHhcCCCCe-EEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCC
Confidence            34568999999999999999997544556 999998 778887773             279999999988632   223


Q ss_pred             -cEEEec
Q 037818          193 -DAIFMK  198 (199)
Q Consensus       193 -D~~~l~  198 (199)
                       |+|++.
T Consensus       227 YDVIIvD  233 (374)
T PRK01581        227 YDVIIID  233 (374)
T ss_pred             ccEEEEc
Confidence             888864

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=97.60  E-value=4.8e-05  Score=58.54  Aligned_cols=69  Identities=19%  Similarity=0.259  Sum_probs=52.4

Q ss_pred             hCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----CCCceEEeCCCCCCCCcc--cEEEec
Q 037818          126 GYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----ILGVTHIGGDTFKSIPAA--DAIFMK  198 (199)
Q Consensus       126 ~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----~~ri~~~~gd~f~~~P~a--D~~~l~  198 (199)
                      .++ -..+.+++|+|||.|.+...|+.++-  + .+.+|. |..++.|++    .++|+++.+|+-+..|.+  |+++++
T Consensus        38 aLp-~~ry~~alEvGCs~G~lT~~LA~rCd--~-LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~S  113 (201)
T PF05401_consen   38 ALP-RRRYRRALEVGCSIGVLTERLAPRCD--R-LLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLS  113 (201)
T ss_dssp             HHT-TSSEEEEEEE--TTSHHHHHHGGGEE--E-EEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEE
T ss_pred             hcC-ccccceeEecCCCccHHHHHHHHhhC--c-eEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEe
Confidence            455 67788999999999999999999873  3 678998 888888875    389999999998877774  999875

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=97.59  E-value=0.00019  Score=62.93  Aligned_cols=75  Identities=20%  Similarity=0.233  Sum_probs=55.5

Q ss_pred             HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----CCCceEEeCCCCC---CCCc
Q 037818          120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----ILGVTHIGGDTFK---SIPA  191 (199)
Q Consensus       120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----~~ri~~~~gd~f~---~~P~  191 (199)
                      .+.+++.++ .....+|||||||+|.++..+++.+.  + ++.+|. |..++.++.    .++++++.+|+.+   ++|.
T Consensus        26 ~~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~~--~-v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~  101 (475)
T PLN02336         26 RPEILSLLP-PYEGKSVLELGAGIGRFTGELAKKAG--Q-VIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISD  101 (475)
T ss_pred             hhHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhCC--E-EEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCC
Confidence            456666666 55567999999999999999998854  5 788896 566655542    3689999999963   4554


Q ss_pred             --ccEEEec
Q 037818          192 --ADAIFMK  198 (199)
Q Consensus       192 --aD~~~l~  198 (199)
                        .|+++..
T Consensus       102 ~~fD~I~~~  110 (475)
T PLN02336        102 GSVDLIFSN  110 (475)
T ss_pred             CCEEEEehh
Confidence              3988864

>PRK03612 spermidine synthase; Provisional

Probab=97.58  E-value=0.0001  Score=65.42  Aligned_cols=66  Identities=24%  Similarity=0.293  Sum_probs=53.7

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCC-CCeeeeccc-hHHHhcCCC-------------CCCceEEeCCCCCC---CCcc
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVGEAPS-------------ILGVTHIGGDTFKS---IPAA  192 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~~v~Dl-p~v~~~a~~-------------~~ri~~~~gd~f~~---~P~a  192 (199)
                      .+.++|+|||||+|..++++++ +|. -+ ++.+|+ |++++.+++             .+|++++.+|.++.   .+..
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~-v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~  373 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLK-YPDVEQ-VTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEK  373 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHh-CCCcCe-EEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCC
Confidence            4568999999999999999996 677 56 999998 889988876             16899999998862   3443


Q ss_pred             -cEEEec
Q 037818          193 -DAIFMK  198 (199)
Q Consensus       193 -D~~~l~  198 (199)
                       |+|++.
T Consensus       374 fDvIi~D  380 (521)
T PRK03612        374 FDVIIVD  380 (521)
T ss_pred             CCEEEEe
Confidence             999864

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=97.57  E-value=8.8e-05  Score=60.48  Aligned_cols=73  Identities=16%  Similarity=0.080  Sum_probs=48.2

Q ss_pred             HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccch-HHHhcCCC-------CCCceEEeCCCCCCCCc
Q 037818          120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP-EVVGEAPS-------ILGVTHIGGDTFKSIPA  191 (199)
Q Consensus       120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp-~v~~~a~~-------~~ri~~~~gd~f~~~P~  191 (199)
                      ...+++..+ .+...+|||||||-|.++..+++++ +++ ++.+.+. +..+.+++       .+++++..+|+.+ ++.
T Consensus        51 ~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~-g~~-v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~-~~~  126 (273)
T PF02353_consen   51 LDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERY-GCH-VTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD-LPG  126 (273)
T ss_dssp             HHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---E-EEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----
T ss_pred             HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHc-CcE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc-cCC
Confidence            356778887 8888999999999999999999999 889 9999984 44444432       2789999999875 333


Q ss_pred             -ccEEE
Q 037818          192 -ADAIF  196 (199)
Q Consensus       192 -aD~~~  196 (199)
                       -|.|+
T Consensus       127 ~fD~Iv  132 (273)
T PF02353_consen  127 KFDRIV  132 (273)
T ss_dssp             S-SEEE
T ss_pred             CCCEEE
Confidence             36554

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PLN02672 methionine S-methyltransferase

Probab=97.56  E-value=0.00013  Score=69.27  Aligned_cols=63  Identities=21%  Similarity=0.074  Sum_probs=52.0

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC----------------------CCceEEeCCCCCCCC
Q 037818          134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI----------------------LGVTHIGGDTFKSIP  190 (199)
Q Consensus       134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~----------------------~ri~~~~gd~f~~~P  190 (199)
                      .+|+|||||+|.++..+++++|..+ ++.+|. |..++.|+++                      +||+++.+|+++..+
T Consensus       120 ~~VLDlG~GSG~Iai~La~~~~~~~-v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        120 KTVAELGCGNGWISIAIAEKWLPSK-VYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CEEEEEecchHHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            5899999999999999999999999 999997 6677666321                      489999999998654


Q ss_pred             c----ccEEEe
Q 037818          191 A----ADAIFM  197 (199)
Q Consensus       191 ~----aD~~~l  197 (199)
                      .    -|+++-
T Consensus       199 ~~~~~fDlIVS  209 (1082)
T PLN02672        199 DNNIELDRIVG  209 (1082)
T ss_pred             ccCCceEEEEE
Confidence            2    387763

>PRK04266 fibrillarin; Provisional

Probab=97.53  E-value=0.00037  Score=55.25  Aligned_cols=70  Identities=14%  Similarity=0.189  Sum_probs=52.7

Q ss_pred             hCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHH----HhcCCCCCCceEEeCCCCCC-----CCc-ccE
Q 037818          126 GYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEV----VGEAPSILGVTHIGGDTFKS-----IPA-ADA  194 (199)
Q Consensus       126 ~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v----~~~a~~~~ri~~~~gd~f~~-----~P~-aD~  194 (199)
                      .++ .....+|+|+|||+|.++..+++..+.-+ ++.+|. |..    .+.+++.++|.++.+|..++     ++. .|+
T Consensus        67 ~l~-i~~g~~VlD~G~G~G~~~~~la~~v~~g~-V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~  144 (226)
T PRK04266         67 NFP-IKKGSKVLYLGAASGTTVSHVSDIVEEGV-VYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDV  144 (226)
T ss_pred             hCC-CCCCCEEEEEccCCCHHHHHHHHhcCCCe-EEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCE
Confidence            355 56668999999999999999999998667 889998 433    33555557899999998753     233 388


Q ss_pred             EEe
Q 037818          195 IFM  197 (199)
Q Consensus       195 ~~l  197 (199)
                      ++.
T Consensus       145 i~~  147 (226)
T PRK04266        145 IYQ  147 (226)
T ss_pred             EEE
Confidence            763

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=97.52  E-value=0.00028  Score=58.14  Aligned_cols=73  Identities=21%  Similarity=0.366  Sum_probs=53.2

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-------CCCceEEeCCCCC-CCCc
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-------ILGVTHIGGDTFK-SIPA  191 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-------~~ri~~~~gd~f~-~~P~  191 (199)
                      ..+++..+ .....+|+|||||.|.+...++++..  + ++.+|+ |..++.+++       .++++++.+|+.+ +++.
T Consensus        26 ~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~~--~-V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~  101 (294)
T PTZ00338         26 DKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLAK--K-VIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPY  101 (294)
T ss_pred             HHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhCC--c-EEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccc
Confidence            45566665 56668999999999999999999854  5 777886 344444432       3789999999986 5555


Q ss_pred             ccEEEe
Q 037818          192 ADAIFM  197 (199)
Q Consensus       192 aD~~~l  197 (199)
                      .|+++.
T Consensus       102 ~d~Vva  107 (294)
T PTZ00338        102 FDVCVA  107 (294)
T ss_pred             cCEEEe
Confidence            576653

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=97.51  E-value=0.00018  Score=59.00  Aligned_cols=73  Identities=16%  Similarity=0.094  Sum_probs=52.5

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCCC-CCc-cc
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFKS-IPA-AD  193 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~~-~P~-aD  193 (199)
                      .++..++ .....+|||||||+|..+..+++.  ..+ ++.+|. |..++.+++.     -++++..+|+.+. ++. .|
T Consensus       111 ~~~~~~~-~~~~~~vLDlGcG~G~~~~~la~~--g~~-V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD  186 (287)
T PRK12335        111 EVLEAVQ-TVKPGKALDLGCGQGRNSLYLALL--GFD-VTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYD  186 (287)
T ss_pred             HHHHHhh-ccCCCCEEEeCCCCCHHHHHHHHC--CCE-EEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCcc
Confidence            3445444 334469999999999999999885  467 999998 5666665532     3688888998763 444 39


Q ss_pred             EEEec
Q 037818          194 AIFMK  198 (199)
Q Consensus       194 ~~~l~  198 (199)
                      +++..
T Consensus       187 ~I~~~  191 (287)
T PRK12335        187 FILST  191 (287)
T ss_pred             EEEEc
Confidence            88753

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=97.50  E-value=0.00024  Score=57.81  Aligned_cols=64  Identities=17%  Similarity=0.100  Sum_probs=52.7

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC------C-CCceEEeCCCCC
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS------I-LGVTHIGGDTFK  187 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~------~-~ri~~~~gd~f~  187 (199)
                      +.+++.+. +....+|||||||-|.+++-.+++| +.+ ++.+++ ++..+.+++      . ++|++...|+-+
T Consensus        62 ~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y-~v~-V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd  133 (283)
T COG2230          62 DLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY-GVT-VVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD  133 (283)
T ss_pred             HHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc-CCE-EEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccc
Confidence            56778887 8888999999999999999999999 999 999998 455555543      1 578888888765

>PRK04148 hypothetical protein; Provisional

Probab=97.50  E-value=0.0003  Score=51.08  Aligned_cols=69  Identities=19%  Similarity=0.233  Sum_probs=49.7

Q ss_pred             HhhhCCCCCCcceEEEecCCccH-HHHHHHHHCCCCCeeeeccc-hHHHhcCCCCCCceEEeCCCCCCCCc----ccEEE
Q 037818          123 VLDGYNGFKGVKQLVDVGGSAGD-CLRMILQKHRFICEGINFDL-PEVVGEAPSILGVTHIGGDTFKSIPA----ADAIF  196 (199)
Q Consensus       123 ~~~~~~~~~~~~~vvDvGGG~G~-~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~~ri~~~~gd~f~~~P~----aD~~~  196 (199)
                      +.+.++ -.+..+++|||+|.|. ++..|.+.  ... ++.+|. |..++.+++. .+.++.+|+|++-+.    +|+++
T Consensus         8 l~~~~~-~~~~~kileIG~GfG~~vA~~L~~~--G~~-ViaIDi~~~aV~~a~~~-~~~~v~dDlf~p~~~~y~~a~liy   82 (134)
T PRK04148          8 IAENYE-KGKNKKIVELGIGFYFKVAKKLKES--GFD-VIVIDINEKAVEKAKKL-GLNAFVDDLFNPNLEIYKNAKLIY   82 (134)
T ss_pred             HHHhcc-cccCCEEEEEEecCCHHHHHHHHHC--CCE-EEEEECCHHHHHHHHHh-CCeEEECcCCCCCHHHHhcCCEEE
Confidence            444454 2234789999999996 87777765  467 889997 6667666543 579999999987554    57764

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=97.49  E-value=0.00022  Score=54.97  Aligned_cols=64  Identities=20%  Similarity=0.379  Sum_probs=47.3

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCCCCceEEeCCCCC---CCCc--ccEEEec
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSILGVTHIGGDTFK---SIPA--ADAIFMK  198 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~~ri~~~~gd~f~---~~P~--aD~~~l~  198 (199)
                      ...+|+|||||+|.++..+++. ...+ ++.+|. |+.++.+++ .+++++.+|+.+   +++.  .|++++.
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~-~~~~-~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~   82 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDE-KQVR-GYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILS   82 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhc-cCCc-EEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEh
Confidence            3469999999999999888765 4667 888897 455655543 468888888865   2443  4999875

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.47  E-value=0.00032  Score=58.52  Aligned_cols=74  Identities=16%  Similarity=0.270  Sum_probs=55.3

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCC-CCeeeeccc-hHHHhcCCC------CCCceEEeCCCCCCCCc--
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVGEAPS------ILGVTHIGGDTFKSIPA--  191 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~~v~Dl-p~v~~~a~~------~~ri~~~~gd~f~~~P~--  191 (199)
                      .+++..+ .+...+|||||||+|.++..+++..+. -+ ++.+|. |+.++.|++      .++++++.+|..+..+.  
T Consensus        71 ~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~-VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~  148 (322)
T PRK13943         71 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGL-VVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFA  148 (322)
T ss_pred             HHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccC
Confidence            3445555 556689999999999999999998875 35 788887 666666654      26799999998764432  


Q ss_pred             -ccEEEe
Q 037818          192 -ADAIFM  197 (199)
Q Consensus       192 -aD~~~l  197 (199)
                       .|++++
T Consensus       149 ~fD~Ii~  155 (322)
T PRK13943        149 PYDVIFV  155 (322)
T ss_pred             CccEEEE
Confidence             388876

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=97.47  E-value=0.00011  Score=61.29  Aligned_cols=63  Identities=14%  Similarity=0.016  Sum_probs=48.0

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC-CCCc--ccEEEec
Q 037818          133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK-SIPA--ADAIFMK  198 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~-~~P~--aD~~~l~  198 (199)
                      ..+|||||||.|.++..+++  +..+ ++.+|. |+.++.|++.       .+|+++.+|+.+ +.+.  .|++++.
T Consensus       132 g~~ILDIGCG~G~~s~~La~--~g~~-V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~  205 (322)
T PLN02396        132 GLKFIDIGCGGGLLSEPLAR--MGAT-VTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSL  205 (322)
T ss_pred             CCEEEEeeCCCCHHHHHHHH--cCCE-EEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEh
Confidence            35899999999999998876  4677 999997 6777776632       479999999765 3333  3988763

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=97.47  E-value=0.00034  Score=53.18  Aligned_cols=65  Identities=15%  Similarity=0.150  Sum_probs=44.9

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCC------CC-CCceEEeCCCCCC--CCcc-cEEE
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAP------SI-LGVTHIGGDTFKS--IPAA-DAIF  196 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~------~~-~ri~~~~gd~f~~--~P~a-D~~~  196 (199)
                      .+..+|||+|||.|+++.+|++.-=.-+ -+.+|- +..++.|+      .. +.|+|+..|+++|  .+.. |+++
T Consensus        66 ~~A~~VlDLGtGNG~~L~~L~~egf~~~-L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvl  141 (227)
T KOG1271|consen   66 KQADRVLDLGTGNGHLLFQLAKEGFQSK-LTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVL  141 (227)
T ss_pred             ccccceeeccCCchHHHHHHHHhcCCCC-ccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEe
Confidence            3445999999999999999998654433 446663 44444443      33 4499999999985  3433 7765

>TIGR00438 rrmJ cell division protein FtsJ

Probab=97.45  E-value=0.00049  Score=52.79  Aligned_cols=70  Identities=19%  Similarity=0.240  Sum_probs=52.0

Q ss_pred             HhhhCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccchHHHhcCCCCCCceEEeCCCCCC---------CCc-
Q 037818          123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDLPEVVGEAPSILGVTHIGGDTFKS---------IPA-  191 (199)
Q Consensus       123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dlp~v~~~a~~~~ri~~~~gd~f~~---------~P~-  191 (199)
                      +-+.+.......+|||||||+|.++..+++++ +..+ ++.+|+-+..    ..++++++.+|+.++         .|. 
T Consensus        23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~-v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~   97 (188)
T TIGR00438        23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGR-VIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDD   97 (188)
T ss_pred             HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCce-EEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCC
Confidence            33444434566899999999999999999887 6677 9999986533    346789999998752         333 


Q ss_pred             -ccEEEe
Q 037818          192 -ADAIFM  197 (199)
Q Consensus       192 -aD~~~l  197 (199)
                       .|+++.
T Consensus        98 ~~D~V~~  104 (188)
T TIGR00438        98 KVDVVMS  104 (188)
T ss_pred             CccEEEc
Confidence             488875

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=97.42  E-value=0.00018  Score=55.19  Aligned_cols=64  Identities=20%  Similarity=0.373  Sum_probs=47.1

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHH-HhcCCCCCCceEEeCCCCC---CCCc-c-cEEEec
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEV-VGEAPSILGVTHIGGDTFK---SIPA-A-DAIFMK  198 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v-~~~a~~~~ri~~~~gd~f~---~~P~-a-D~~~l~  198 (199)
                      ...+|||+|||.|.++..|.+. .+++ +..+|+.+. +..+. ...+..+.+|+-+   .+|. . |.++|+
T Consensus        13 pgsrVLDLGCGdG~LL~~L~~~-k~v~-g~GvEid~~~v~~cv-~rGv~Viq~Dld~gL~~f~d~sFD~VIls   82 (193)
T PF07021_consen   13 PGSRVLDLGCGDGELLAYLKDE-KQVD-GYGVEIDPDNVAACV-ARGVSVIQGDLDEGLADFPDQSFDYVILS   82 (193)
T ss_pred             CCCEEEecCCCchHHHHHHHHh-cCCe-EEEEecCHHHHHHHH-HcCCCEEECCHHHhHhhCCCCCccEEehH
Confidence            4489999999999999777774 7898 888887432 22221 2567788899886   3666 3 999886

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=97.40  E-value=0.00036  Score=46.56  Aligned_cols=62  Identities=16%  Similarity=0.102  Sum_probs=47.9

Q ss_pred             eEEEecCCccHHHHHHHHHCCCCCeeeeccch-HHHhcCC------CCCCceEEeCCCCCCC---Cc-ccEEEec
Q 037818          135 QLVDVGGSAGDCLRMILQKHRFICEGINFDLP-EVVGEAP------SILGVTHIGGDTFKSI---PA-ADAIFMK  198 (199)
Q Consensus       135 ~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp-~v~~~a~------~~~ri~~~~gd~f~~~---P~-aD~~~l~  198 (199)
                      +++|+|||.|.++..+++ .+..+ .+.+|.. ..+..++      ...++++..+|+.+..   +. .|++++.
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~   73 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPGAR-VTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISD   73 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCCCE-EEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEc
Confidence            589999999999999998 77788 9999974 4444443      1378999999999743   22 4988864

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=97.38  E-value=0.00052  Score=53.63  Aligned_cols=72  Identities=19%  Similarity=0.237  Sum_probs=52.8

Q ss_pred             HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCc---c
Q 037818          123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPA---A  192 (199)
Q Consensus       123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~---a  192 (199)
                      +.+.++ .....+|+|||||+|.++..+++...  + ++.+|. |..++.++++      .++++..+|.++.+|.   .
T Consensus        70 l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~~--~-v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  145 (212)
T PRK00312         70 MTELLE-LKPGDRVLEIGTGSGYQAAVLAHLVR--R-VFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPF  145 (212)
T ss_pred             HHHhcC-CCCCCEEEEECCCccHHHHHHHHHhC--E-EEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCc
Confidence            344455 56668999999999999987777754  5 777775 6666666542      5699999999875543   3


Q ss_pred             cEEEec
Q 037818          193 DAIFMK  198 (199)
Q Consensus       193 D~~~l~  198 (199)
                      |++++.
T Consensus       146 D~I~~~  151 (212)
T PRK00312        146 DRILVT  151 (212)
T ss_pred             CEEEEc
Confidence            988864

>TIGR00452 methyltransferase, putative

Probab=97.37  E-value=0.00079  Score=55.96  Aligned_cols=73  Identities=14%  Similarity=0.014  Sum_probs=49.1

Q ss_pred             HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchH-HHhcC-------CCCCCceEEeCCCCC-CCCc-c
Q 037818          123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPE-VVGEA-------PSILGVTHIGGDTFK-SIPA-A  192 (199)
Q Consensus       123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~-v~~~a-------~~~~ri~~~~gd~f~-~~P~-a  192 (199)
                      ++..++ ....++|+|||||+|.++..+++..+. + ++.+|.-. .+..+       ....++.+..+|+-+ +.+. .
T Consensus       113 ~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g~~-~-v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~F  189 (314)
T TIGR00452       113 VLPHLS-PLKGRTILDVGCGSGYHMWRMLGHGAK-S-LVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAF  189 (314)
T ss_pred             HHHhcC-CCCCCEEEEeccCCcHHHHHHHHcCCC-E-EEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCc
Confidence            444443 333489999999999999999988775 6 89999633 33221       123678888888754 2222 3


Q ss_pred             cEEEec
Q 037818          193 DAIFMK  198 (199)
Q Consensus       193 D~~~l~  198 (199)
                      |+|+..
T Consensus       190 D~V~s~  195 (314)
T TIGR00452       190 DTVFSM  195 (314)
T ss_pred             CEEEEc
Confidence            988753

Known examples to date are restricted to the proteobacteria.

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.36  E-value=0.00029  Score=51.63  Aligned_cols=74  Identities=19%  Similarity=0.259  Sum_probs=56.1

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCCCCCc-c--
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFKSIPA-A--  192 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~~~P~-a--  192 (199)
                      .|.+-|+.+.+ +++.|+|||.|.+.  ++-.+|..+.++.||+ |+.++.++.+     -+|.+..+|+.++.|. +  
T Consensus        39 ~Ih~TygdiEg-kkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~f  115 (185)
T KOG3420|consen   39 TIHNTYGDIEG-KKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIF  115 (185)
T ss_pred             HHHhhhccccC-cchhhhcCchhhhH--HHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeE
Confidence            34455542444 89999999999998  5567788887899998 8888888875     4688999999987666 2  


Q ss_pred             cEEEec
Q 037818          193 DAIFMK  198 (199)
Q Consensus       193 D~~~l~  198 (199)
                      |..+++
T Consensus       116 DtaviN  121 (185)
T KOG3420|consen  116 DTAVIN  121 (185)
T ss_pred             eeEEec
Confidence            666553

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.35  E-value=0.00027  Score=57.80  Aligned_cols=68  Identities=22%  Similarity=0.265  Sum_probs=56.7

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC----------CCceEEeCCCCC---CCCc-ccE
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI----------LGVTHIGGDTFK---SIPA-ADA  194 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~----------~ri~~~~gd~f~---~~P~-aD~  194 (199)
                      .++.++||=||||.|..++++++..+.-+ ++++|+ |.|++.+++.          +|++.+.+|=++   ..+. .|+
T Consensus        74 h~~pk~VLiiGgGdG~tlRevlkh~~ve~-i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDv  152 (282)
T COG0421          74 HPNPKRVLIIGGGDGGTLREVLKHLPVER-ITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDV  152 (282)
T ss_pred             CCCCCeEEEECCCccHHHHHHHhcCCcce-EEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCE
Confidence            45557999999999999999999888777 999998 8999988752          899999999886   3444 499


Q ss_pred             EEec
Q 037818          195 IFMK  198 (199)
Q Consensus       195 ~~l~  198 (199)
                      |++-
T Consensus       153 Ii~D  156 (282)
T COG0421         153 IIVD  156 (282)
T ss_pred             EEEc
Confidence            9863

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=97.32  E-value=0.00054  Score=58.55  Aligned_cols=71  Identities=17%  Similarity=0.100  Sum_probs=52.9

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC---CCceEEeCCCCCCCCc-ccEEE
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI---LGVTHIGGDTFKSIPA-ADAIF  196 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~---~ri~~~~gd~f~~~P~-aD~~~  196 (199)
                      .+++.++ .....+|||||||+|.++..+++.+ +.+ ++.+|+ |+.++.+++.   ..+++..+|+.+ ++. .|+++
T Consensus       158 ~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~-g~~-V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~-l~~~fD~Iv  233 (383)
T PRK11705        158 LICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHY-GVS-VVGVTISAEQQKLAQERCAGLPVEIRLQDYRD-LNGQFDRIV  233 (383)
T ss_pred             HHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHC-CCE-EEEEeCCHHHHHHHHHHhccCeEEEEECchhh-cCCCCCEEE
Confidence            4556665 6666899999999999999998876 578 999997 6777777653   347888888754 233 38775

>TIGR03438 probable methyltransferase

Probab=97.29  E-value=0.00032  Score=57.96  Aligned_cols=63  Identities=19%  Similarity=0.263  Sum_probs=46.9

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccch-HHHhcCCC-----C--CCceEEeCCCCC
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDLP-EVVGEAPS-----I--LGVTHIGGDTFK  187 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dlp-~v~~~a~~-----~--~ri~~~~gd~f~  187 (199)
                      +.+++.++   ...+|||+|||+|..+..++++.+ ..+ .+.+|+. +.++.+++     .  -+|.++.|||.+
T Consensus        55 ~~ia~~~~---~~~~iLELGcGtG~~t~~Ll~~l~~~~~-~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~  126 (301)
T TIGR03438        55 DEIAAATG---AGCELVELGSGSSRKTRLLLDALRQPAR-YVPIDISADALKESAAALAADYPQLEVHGICADFTQ  126 (301)
T ss_pred             HHHHHhhC---CCCeEEecCCCcchhHHHHHHhhccCCe-EEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccc
Confidence            34444433   346899999999999999999998 688 9999985 44454432     2  346778999986

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=97.28  E-value=0.00039  Score=57.11  Aligned_cols=65  Identities=22%  Similarity=0.100  Sum_probs=45.9

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc-ccEEEec
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA-ADAIFMK  198 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~-aD~~~l~  198 (199)
                      ...+|+|||||+|.++..+++. +.-+ ++.+|. |..++.++++       +++.+..+|.....+. .|+++.+
T Consensus       159 ~g~~VLDvGcGsG~lai~aa~~-g~~~-V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan  232 (288)
T TIGR00406       159 KDKNVIDVGCGSGILSIAALKL-GAAK-VVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVAN  232 (288)
T ss_pred             CCCEEEEeCCChhHHHHHHHHc-CCCe-EEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEe
Confidence            3489999999999999888865 4457 999997 5666666653       4677777764332233 4988763

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=97.26  E-value=0.00028  Score=54.67  Aligned_cols=53  Identities=19%  Similarity=0.319  Sum_probs=42.2

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCC------CCCCceEEeCCCCC
Q 037818          134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAP------SILGVTHIGGDTFK  187 (199)
Q Consensus       134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~------~~~ri~~~~gd~f~  187 (199)
                      ..+||||||.|.++.++++.+|+.. .+.+|. +..+..+.      ..+++.++.+|...
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n-~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~   78 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDIN-FIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARE   78 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSE-EEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTT
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCC-EEEEecchHHHHHHHHHHHhhcccceEEEEccHHH
Confidence            4999999999999999999999999 999997 34444332      24899999998775

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=97.26  E-value=0.00059  Score=55.05  Aligned_cols=66  Identities=15%  Similarity=0.162  Sum_probs=49.8

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEE----eCCCCCCCC--cc--c
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHI----GGDTFKSIP--AA--D  193 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~----~gd~f~~~P--~a--D  193 (199)
                      +.....++|+|||+|..+..++..-|..+ +|.+|. +..+..|.++       +||..+    ..|-+++.|  .+  |
T Consensus       146 ~~~~~~ildlgtGSGaIslsll~~L~~~~-v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~d  224 (328)
T KOG2904|consen  146 HSKHTHILDLGTGSGAISLSLLHGLPQCT-VTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKID  224 (328)
T ss_pred             hcccceEEEecCCccHHHHHHHhcCCCce-EEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCcee
Confidence            55667999999999999999999999999 999998 4455555543       787776    566665443  33  6


Q ss_pred             EEE
Q 037818          194 AIF  196 (199)
Q Consensus       194 ~~~  196 (199)
                      +++
T Consensus       225 llv  227 (328)
T KOG2904|consen  225 LLV  227 (328)
T ss_pred             EEe
Confidence            554

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=97.24  E-value=0.00021  Score=62.14  Aligned_cols=73  Identities=11%  Similarity=0.072  Sum_probs=53.5

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCC-----
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSI-----  189 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~-----  189 (199)
                      .+++.++ .....+|+|+|||+|.++..+++..  .+ ++.+|. |+.++.|+++      ++++++.+|+.+.+     
T Consensus       288 ~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~--~~-V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~  363 (443)
T PRK13168        288 RALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA--AE-VVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPW  363 (443)
T ss_pred             HHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC--CE-EEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhh
Confidence            3334443 3445799999999999999999886  46 889997 6777777653      57999999997532     


Q ss_pred             Cc--ccEEEec
Q 037818          190 PA--ADAIFMK  198 (199)
Q Consensus       190 P~--aD~~~l~  198 (199)
                      +.  .|++++.
T Consensus       364 ~~~~fD~Vi~d  374 (443)
T PRK13168        364 ALGGFDKVLLD  374 (443)
T ss_pred             hcCCCCEEEEC
Confidence            22  3988863

>TIGR00417 speE spermidine synthase

Probab=97.22  E-value=0.00041  Score=56.41  Aligned_cols=66  Identities=23%  Similarity=0.282  Sum_probs=50.3

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----------CCCceEEeCCCCCC---CCcc-cEE
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----------ILGVTHIGGDTFKS---IPAA-DAI  195 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----------~~ri~~~~gd~f~~---~P~a-D~~  195 (199)
                      ++.++||+||||+|.++..+++..+..+ .+++|+ |.+++.+++          .+|++++.+|.++-   .+.. |+|
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~-v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvI  149 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSVEK-ATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVI  149 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCcce-EEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEE
Confidence            4567999999999999999998766667 899997 566666654          26899999998752   2333 888


Q ss_pred             Ee
Q 037818          196 FM  197 (199)
Q Consensus       196 ~l  197 (199)
                      ++
T Consensus       150 i~  151 (270)
T TIGR00417       150 IV  151 (270)
T ss_pred             EE
Confidence            76

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=97.21  E-value=0.00039  Score=54.45  Aligned_cols=76  Identities=18%  Similarity=0.272  Sum_probs=55.0

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCc-
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPA-  191 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~-  191 (199)
                      ..+++.++ .....+|||||+|+|.++.-+++.. +.-+ ++.+|. |..++.|+++      .+|+++.||-...+|. 
T Consensus        62 a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~-Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~  139 (209)
T PF01135_consen   62 ARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGR-VVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE  139 (209)
T ss_dssp             HHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEE-EEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred             HHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccce-EEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence            35667777 7777999999999999999888875 3345 677774 7778888753      6899999999887666 


Q ss_pred             c--cEEEec
Q 037818          192 A--DAIFMK  198 (199)
Q Consensus       192 a--D~~~l~  198 (199)
                      +  |.+++.
T Consensus       140 apfD~I~v~  148 (209)
T PF01135_consen  140 APFDRIIVT  148 (209)
T ss_dssp             -SEEEEEES
T ss_pred             CCcCEEEEe
Confidence            3  888763

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PLN02823 spermine synthase

Probab=97.20  E-value=0.00047  Score=57.83  Aligned_cols=66  Identities=21%  Similarity=0.177  Sum_probs=52.9

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----------CCCceEEeCCCCCC---CCcc-cEE
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----------ILGVTHIGGDTFKS---IPAA-DAI  195 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----------~~ri~~~~gd~f~~---~P~a-D~~  195 (199)
                      .+.++||-||||.|..++++++..+.-+ ++++|+ |.+++.+++          .+|++++.+|-++-   .+.. |+|
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~-v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvI  180 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRHKTVEK-VVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVI  180 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhCCCCCe-EEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEE
Confidence            3568999999999999999998666667 999998 788888874          27999999998863   2233 888


Q ss_pred             Ee
Q 037818          196 FM  197 (199)
Q Consensus       196 ~l  197 (199)
                      ++
T Consensus       181 i~  182 (336)
T PLN02823        181 IG  182 (336)
T ss_pred             Ee
Confidence            86

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.20  E-value=0.00029  Score=55.04  Aligned_cols=76  Identities=21%  Similarity=0.295  Sum_probs=47.2

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC---------------CCCceEEeCCC
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS---------------ILGVTHIGGDT  185 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~---------------~~ri~~~~gd~  185 (199)
                      .+++.++ ......++|||+|.|....+.+-.++--+ ++.+++ |...+.|..               ..++++..|||
T Consensus        33 ~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~-~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf  110 (205)
T PF08123_consen   33 KILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKK-SVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF  110 (205)
T ss_dssp             HHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SE-EEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred             HHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcE-EEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence            4556666 77778999999999999998887777555 888886 433333321               26789999999


Q ss_pred             CCC------CCcccEEEecC
Q 037818          186 FKS------IPAADAIFMKW  199 (199)
Q Consensus       186 f~~------~P~aD~~~l~~  199 (199)
                      +++      +-.||++++++
T Consensus       111 l~~~~~~~~~s~AdvVf~Nn  130 (205)
T PF08123_consen  111 LDPDFVKDIWSDADVVFVNN  130 (205)
T ss_dssp             TTHHHHHHHGHC-SEEEE--
T ss_pred             cccHhHhhhhcCCCEEEEec
Confidence            973      24479999875

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=97.20  E-value=0.00027  Score=58.14  Aligned_cols=83  Identities=14%  Similarity=0.093  Sum_probs=51.3

Q ss_pred             HHHHHhccchhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCce
Q 037818          108 MRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVT  179 (199)
Q Consensus       108 f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~  179 (199)
                      |-..-+..++.... +++.+. . +.++|+|||||+|.++++.++.... + ++.+|. |..++.++++       +++.
T Consensus       140 FGTG~H~TT~lcl~-~l~~~~-~-~g~~vLDvG~GSGILaiaA~klGA~-~-v~a~DiDp~Av~~a~~N~~~N~~~~~~~  214 (295)
T PF06325_consen  140 FGTGHHPTTRLCLE-LLEKYV-K-PGKRVLDVGCGSGILAIAAAKLGAK-K-VVAIDIDPLAVEAARENAELNGVEDRIE  214 (295)
T ss_dssp             S-SSHCHHHHHHHH-HHHHHS-S-TTSEEEEES-TTSHHHHHHHHTTBS-E-EEEEESSCHHHHHHHHHHHHTT-TTCEE
T ss_pred             ccCCCCHHHHHHHH-HHHHhc-c-CCCEEEEeCCcHHHHHHHHHHcCCC-e-EEEecCCHHHHHHHHHHHHHcCCCeeEE
Confidence            54444444444433 334444 3 3479999999999999999987553 5 889997 6777777763       5665


Q ss_pred             EEeCCCCCCCCc--ccEEEec
Q 037818          180 HIGGDTFKSIPA--ADAIFMK  198 (199)
Q Consensus       180 ~~~gd~f~~~P~--aD~~~l~  198 (199)
                      ..   ...+.+.  .|+|+-+
T Consensus       215 v~---~~~~~~~~~~dlvvAN  232 (295)
T PF06325_consen  215 VS---LSEDLVEGKFDLVVAN  232 (295)
T ss_dssp             ES---CTSCTCCS-EEEEEEE
T ss_pred             EE---EecccccccCCEEEEC
Confidence            43   1223333  4888753

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=97.19  E-value=0.00025  Score=55.14  Aligned_cols=64  Identities=8%  Similarity=0.073  Sum_probs=48.6

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCC--c--ccEEEec
Q 037818          133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIP--A--ADAIFMK  198 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P--~--aD~~~l~  198 (199)
                      ..+|+|+|||+|.++.+++.+.. .+ ++.+|. |..++.++++      ++++++.+|+++.++  .  .|++++.
T Consensus        54 ~~~vLDl~~GsG~l~l~~lsr~a-~~-V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~D  128 (199)
T PRK10909         54 DARCLDCFAGSGALGLEALSRYA-AG-ATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVD  128 (199)
T ss_pred             CCEEEEcCCCccHHHHHHHHcCC-CE-EEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEEC
Confidence            36999999999999998776664 46 888886 6666666542      579999999986432  2  4998864

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=97.19  E-value=0.0018  Score=50.90  Aligned_cols=55  Identities=11%  Similarity=-0.061  Sum_probs=43.0

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCC------------------CCCCceEEeCCCCCC
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAP------------------SILGVTHIGGDTFKS  188 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~------------------~~~ri~~~~gd~f~~  188 (199)
                      ....+|||+|||.|..+..++++  ..+ +|.+|. |..++.+.                  +..+|++..+|+|+.
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~--G~~-V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~  106 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQ--GHR-VLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFAL  106 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhC--CCe-EEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCC
Confidence            34479999999999999999875  677 899998 55555431                  125799999999973

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=97.18  E-value=0.00058  Score=56.82  Aligned_cols=61  Identities=15%  Similarity=0.052  Sum_probs=45.8

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----------CCceEEeCCCCCCCCc-ccEEEe
Q 037818          133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----------LGVTHIGGDTFKSIPA-ADAIFM  197 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----------~ri~~~~gd~f~~~P~-aD~~~l  197 (199)
                      ..+|||||||+|.++..+++.  ..+ ++.+|. |..++.++++           .+++|..+|+.+ ++. .|++++
T Consensus       145 ~~~VLDlGcGtG~~a~~la~~--g~~-V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~-l~~~fD~Vv~  218 (315)
T PLN02585        145 GVTVCDAGCGTGSLAIPLALE--GAI-VSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES-LSGKYDTVTC  218 (315)
T ss_pred             CCEEEEecCCCCHHHHHHHHC--CCE-EEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh-cCCCcCEEEE
Confidence            469999999999999999986  467 999998 5566666532           357888899754 333 387764

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=97.13  E-value=0.00089  Score=58.28  Aligned_cols=73  Identities=15%  Similarity=0.095  Sum_probs=55.7

Q ss_pred             HhhhCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCC---CCc
Q 037818          123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKS---IPA  191 (199)
Q Consensus       123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~---~P~  191 (199)
                      +...++ .....+|+|+|||+|..+..+++.. |..+ ++.+|. +..++.++++      +.|+++.+|+.+.   ++.
T Consensus       242 v~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~-v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~  319 (444)
T PRK14902        242 VAPALD-PKGGDTVLDACAAPGGKTTHIAELLKNTGK-VVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAE  319 (444)
T ss_pred             HHHHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcc
Confidence            334455 4556799999999999999999986 6778 999998 6777666542      4599999999762   343


Q ss_pred             -ccEEEe
Q 037818          192 -ADAIFM  197 (199)
Q Consensus       192 -aD~~~l  197 (199)
                       .|+|++
T Consensus       320 ~fD~Vl~  326 (444)
T PRK14902        320 KFDKILV  326 (444)
T ss_pred             cCCEEEE
Confidence             498876

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=97.12  E-value=0.00063  Score=59.20  Aligned_cols=98  Identities=21%  Similarity=0.211  Sum_probs=60.3

Q ss_pred             cccccccCchhHHHHHHHHhccchhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHC----CCCCeeeeccc-hHH
Q 037818           94 AYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH----RFICEGINFDL-PEV  168 (199)
Q Consensus        94 ~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~----P~l~~~~v~Dl-p~v  168 (199)
                      -||.+++|+..-..|.+|+.   ... ....+.-..-.+...|+|||+|+|-++...+++.    -..+ +..++- |..
T Consensus       152 tYe~fE~D~vKY~~Ye~AI~---~al-~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~-VyAVEkn~~A  226 (448)
T PF05185_consen  152 TYEVFEKDPVKYDQYERAIE---EAL-KDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVK-VYAVEKNPNA  226 (448)
T ss_dssp             HHHHHCC-HHHHHHHHHHHH---HHH-HHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESE-EEEEESSTHH
T ss_pred             cHhhHhcCHHHHHHHHHHHH---HHH-HhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeE-EEEEcCCHhH
Confidence            47888899988888888863   111 1222221100135789999999999987776654    4455 777764 432


Q ss_pred             HhcC----CC---CCCceEEeCCCCC-CCCc-ccEEE
Q 037818          169 VGEA----PS---ILGVTHIGGDTFK-SIPA-ADAIF  196 (199)
Q Consensus       169 ~~~a----~~---~~ri~~~~gd~f~-~~P~-aD~~~  196 (199)
                      +...    +.   .++|+.+.+|+-+ ..|+ +|+++
T Consensus       227 ~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIV  263 (448)
T PF05185_consen  227 VVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIV  263 (448)
T ss_dssp             HHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEE
T ss_pred             HHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEE
Confidence            2221    11   2899999999998 6776 69986

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PTZ00146 fibrillarin; Provisional

Probab=97.12  E-value=0.0018  Score=53.08  Aligned_cols=68  Identities=15%  Similarity=0.142  Sum_probs=51.9

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccchH-----HHhcCCCCCCceEEeCCCCCCC------CcccEEEe
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDLPE-----VVGEAPSILGVTHIGGDTFKSI------PAADAIFM  197 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dlp~-----v~~~a~~~~ri~~~~gd~f~~~------P~aD~~~l  197 (199)
                      +....+|||+|||+|.++..+++... .=+ ++.+|..+     .++.++..++|.++.+|...+.      +..|++++
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~-VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~  208 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGV-VYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFA  208 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCE-EEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEE
Confidence            45667999999999999999999874 446 88888753     5566666688999999986542      22599886


Q ss_pred             c
Q 037818          198 K  198 (199)
Q Consensus       198 ~  198 (199)
                      .
T Consensus       209 D  209 (293)
T PTZ00146        209 D  209 (293)
T ss_pred             e
Confidence            3

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=97.11  E-value=0.00045  Score=57.47  Aligned_cols=63  Identities=11%  Similarity=0.028  Sum_probs=49.0

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCC---CCc-ccEEEec
Q 037818          133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKS---IPA-ADAIFMK  198 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~---~P~-aD~~~l~  198 (199)
                      ..+|||+|||+|.++..+++.  ..+ ++.+|. |..++.|+++      ++++++.+|+.+.   .+. .|++++.
T Consensus       174 ~~~VLDl~cG~G~~sl~la~~--~~~-V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d  247 (315)
T PRK03522        174 PRSMWDLFCGVGGFGLHCATP--GMQ-LTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN  247 (315)
T ss_pred             CCEEEEccCCCCHHHHHHHhc--CCE-EEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence            479999999999999999984  456 899997 6777777642      6799999999752   222 3888764

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.11  E-value=0.00083  Score=51.38  Aligned_cols=66  Identities=20%  Similarity=0.181  Sum_probs=51.1

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCCCCCcccEEEec
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFKSIPAADAIFMK  198 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~~~P~aD~~~l~  198 (199)
                      |.+ ++|+|+|||+|.++.+.+-..|. + ++.+|. |+.++.++++     .+|.|+..|.-+--+..|.++|+
T Consensus        44 l~g-~~V~DlG~GTG~La~ga~~lGa~-~-V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimN  115 (198)
T COG2263          44 LEG-KTVLDLGAGTGILAIGAALLGAS-R-VLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMN  115 (198)
T ss_pred             cCC-CEEEEcCCCcCHHHHHHHhcCCc-E-EEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEEC
Confidence            444 78999999999999998877765 3 677886 7888888865     68999999987633334777775

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=97.09  E-value=0.0011  Score=54.53  Aligned_cols=76  Identities=22%  Similarity=0.227  Sum_probs=58.9

Q ss_pred             HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC----CCceEEeCCCCC--C-CC
Q 037818          120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI----LGVTHIGGDTFK--S-IP  190 (199)
Q Consensus       120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~----~ri~~~~gd~f~--~-~P  190 (199)
                      ...+++.+. -.....+||++||.|.++..+++..| +.+ ++.+|. |+.++.+++.    +|++++.+||-+  . ++
T Consensus         8 l~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~-VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~   85 (296)
T PRK00050          8 LDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGR-LIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLA   85 (296)
T ss_pred             HHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCE-EEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHH
Confidence            345666665 44457999999999999999999997 788 999997 7788777653    589999999985  1 32


Q ss_pred             ----cccEEEe
Q 037818          191 ----AADAIFM  197 (199)
Q Consensus       191 ----~aD~~~l  197 (199)
                          ..|.+++
T Consensus        86 ~~~~~vDgIl~   96 (296)
T PRK00050         86 EGLGKVDGILL   96 (296)
T ss_pred             cCCCccCEEEE
Confidence                2477775

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=97.07  E-value=0.00069  Score=54.43  Aligned_cols=42  Identities=21%  Similarity=0.167  Sum_probs=33.5

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS  174 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~  174 (199)
                      ....+|+|||||+|.++..+++..+. + ++.+|. |..++.+++
T Consensus       118 ~~~~~VLDiGcGsG~l~i~~~~~g~~-~-v~giDis~~~l~~A~~  160 (250)
T PRK00517        118 LPGKTVLDVGCGSGILAIAAAKLGAK-K-VLAVDIDPQAVEAARE  160 (250)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHcCCC-e-EEEEECCHHHHHHHHH
Confidence            34589999999999999988776554 7 889998 677777765

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=97.06  E-value=0.00086  Score=56.21  Aligned_cols=58  Identities=28%  Similarity=0.404  Sum_probs=49.6

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-------------CCCceEEeCCCCCCC
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-------------ILGVTHIGGDTFKSI  189 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-------------~~ri~~~~gd~f~~~  189 (199)
                      .+.++++-+|||.|.-+++++ +||...+.+.+|+ |.+++.++.             .+|++.+.-|-|+.+
T Consensus       288 ~~a~~vLvlGGGDGLAlRell-kyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wl  359 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELL-KYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWL  359 (508)
T ss_pred             cccceEEEEcCCchHHHHHHH-hCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHH
Confidence            467899999999999999987 6898887999998 899998873             289999998888753

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=97.06  E-value=0.0008  Score=55.27  Aligned_cols=72  Identities=24%  Similarity=0.240  Sum_probs=47.2

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC---CCce---EEeCCCCCCCCc---
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI---LGVT---HIGGDTFKSIPA---  191 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~---~ri~---~~~gd~f~~~P~---  191 (199)
                      .+++.+.  .+.++++|+|||+|.++++.++--.. + ++.+|. |..++.++++   +.+.   ...+.....+|+   
T Consensus       154 ~~Le~~~--~~g~~vlDvGcGSGILaIAa~kLGA~-~-v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~  229 (300)
T COG2264         154 EALEKLL--KKGKTVLDVGCGSGILAIAAAKLGAK-K-VVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGP  229 (300)
T ss_pred             HHHHHhh--cCCCEEEEecCChhHHHHHHHHcCCc-e-EEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCc
Confidence            3445554  46699999999999999999876543 4 788997 6677777764   3343   222222223443   


Q ss_pred             ccEEEe
Q 037818          192 ADAIFM  197 (199)
Q Consensus       192 aD~~~l  197 (199)
                      .|+|+-
T Consensus       230 ~DvIVA  235 (300)
T COG2264         230 FDVIVA  235 (300)
T ss_pred             ccEEEe
Confidence            488764

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.03  E-value=0.0023  Score=49.91  Aligned_cols=73  Identities=21%  Similarity=0.245  Sum_probs=57.9

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCc-c
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPA-A  192 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~-a  192 (199)
                      ..+++.++ .+...+||+||+|+|..+.-+++.--  + ++-+++ ++..+.|+++      .+|...-||=...+|+ +
T Consensus        62 A~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~--~-V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~a  137 (209)
T COG2518          62 ARMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVG--R-VVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEA  137 (209)
T ss_pred             HHHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhC--e-EEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCC
Confidence            35667777 78889999999999998888887666  5 767776 6666777652      6799999999988777 5


Q ss_pred             --cEEEe
Q 037818          193 --DAIFM  197 (199)
Q Consensus       193 --D~~~l  197 (199)
                        |.|+.
T Consensus       138 PyD~I~V  144 (209)
T COG2518         138 PYDRIIV  144 (209)
T ss_pred             CcCEEEE
Confidence              88875

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=97.01  E-value=0.0019  Score=54.02  Aligned_cols=73  Identities=18%  Similarity=0.045  Sum_probs=53.3

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC-CCCc--
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK-SIPA--  191 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~-~~P~--  191 (199)
                      .++.... +....+|+|+|||+|.++.+++..  ..+ ++.+|. |..++.++.+      +.+.+..+|+.+ +++.  
T Consensus       173 ~~~~l~~-~~~g~~vLDp~cGtG~~lieaa~~--~~~-v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~  248 (329)
T TIGR01177       173 AMVNLAR-VTEGDRVLDPFCGTGGFLIEAGLM--GAK-VIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSES  248 (329)
T ss_pred             HHHHHhC-CCCcCEEEECCCCCCHHHHHHHHh--CCe-EEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCC
Confidence            3444444 666789999999999999887653  567 889998 6667666542      448899999987 5543  


Q ss_pred             ccEEEec
Q 037818          192 ADAIFMK  198 (199)
Q Consensus       192 aD~~~l~  198 (199)
                      .|++++.
T Consensus       249 ~D~Iv~d  255 (329)
T TIGR01177       249 VDAIATD  255 (329)
T ss_pred             CCEEEEC
Confidence            3888763

This family is found exclusively in the Archaea.

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=96.98  E-value=0.0011  Score=55.23  Aligned_cols=66  Identities=20%  Similarity=0.164  Sum_probs=49.5

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC--------CCceEEe----CCCCCCC--Cc--ccE
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI--------LGVTHIG----GDTFKSI--PA--ADA  194 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~--------~ri~~~~----gd~f~~~--P~--aD~  194 (199)
                      ...++||||+|+|.+...++.+.++++ ++..|. |..++.|+++        +||++..    .++|+.+  +.  -|+
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~-~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDl  192 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWR-FVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDA  192 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCE-EEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEE
Confidence            457999999999998888899999999 999997 6777777642        4777753    4566542  33  388


Q ss_pred             EEec
Q 037818          195 IFMK  198 (199)
Q Consensus       195 ~~l~  198 (199)
                      ++.+
T Consensus       193 ivcN  196 (321)
T PRK11727        193 TLCN  196 (321)
T ss_pred             EEeC
Confidence            8754

>PRK00536 speE spermidine synthase; Provisional

Probab=96.94  E-value=0.0012  Score=53.39  Aligned_cols=64  Identities=14%  Similarity=0.047  Sum_probs=49.3

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----------CCCceEEeCCCCCCCC-c-ccEEE
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----------ILGVTHIGGDTFKSIP-A-ADAIF  196 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----------~~ri~~~~gd~f~~~P-~-aD~~~  196 (199)
                      -.+.++||=||||.|..+++++|. |. + ++.+|+ ++|++.+++          .+|++.+.  ++.... . -|+|+
T Consensus        70 h~~pk~VLIiGGGDGg~~REvLkh-~~-~-v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~--~~~~~~~~~fDVII  144 (262)
T PRK00536         70 KKELKEVLIVDGFDLELAHQLFKY-DT-H-VDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK--QLLDLDIKKYDLII  144 (262)
T ss_pred             CCCCCeEEEEcCCchHHHHHHHCc-CC-e-eEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee--hhhhccCCcCCEEE
Confidence            356799999999999999999976 55 7 999998 678888776          28999886  343322 3 39888


Q ss_pred             ec
Q 037818          197 MK  198 (199)
Q Consensus       197 l~  198 (199)
                      +-
T Consensus       145 vD  146 (262)
T PRK00536        145 CL  146 (262)
T ss_pred             Ec
Confidence            63

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=96.93  E-value=0.00079  Score=53.65  Aligned_cols=67  Identities=15%  Similarity=0.116  Sum_probs=52.7

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCC---------c
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIP---------A  191 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P---------~  191 (199)
                      ..+.++|||||+|+|.-+..+++..| +-+ ++.+|. |+.++.|+++       ++|+++.||..+.+|         .
T Consensus        66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~-v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~  144 (234)
T PLN02781         66 IMNAKNTLEIGVFTGYSLLTTALALPEDGR-ITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPE  144 (234)
T ss_pred             HhCCCEEEEecCcccHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCC
Confidence            45678999999999999999998866 667 999997 5667777653       789999999986321         2


Q ss_pred             ccEEEe
Q 037818          192 ADAIFM  197 (199)
Q Consensus       192 aD~~~l  197 (199)
                      -|++++
T Consensus       145 fD~Vfi  150 (234)
T PLN02781        145 FDFAFV  150 (234)
T ss_pred             CCEEEE
Confidence            388876

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=96.90  E-value=0.0034  Score=49.48  Aligned_cols=63  Identities=14%  Similarity=0.037  Sum_probs=46.5

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccch-HHHhcCC------------------CCCCceEEeCCCCCCCCc
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP-EVVGEAP------------------SILGVTHIGGDTFKSIPA  191 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp-~v~~~a~------------------~~~ri~~~~gd~f~~~P~  191 (199)
                      ....+|||+|||.|..+..|+++  ..+ ++.+|.. ..++.+.                  ...+|++..+|+|+..+.
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~~--G~~-V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~  112 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAEQ--GHE-VLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA  112 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHhC--CCe-EEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence            34479999999999999999874  778 9999984 4455431                  126799999999974322


Q ss_pred             ----ccEEE
Q 037818          192 ----ADAIF  196 (199)
Q Consensus       192 ----aD~~~  196 (199)
                          .|+++
T Consensus       113 ~~~~fd~v~  121 (218)
T PRK13255        113 DLADVDAVY  121 (218)
T ss_pred             cCCCeeEEE
Confidence                27665

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=96.86  E-value=0.0024  Score=55.34  Aligned_cols=73  Identities=16%  Similarity=0.140  Sum_probs=55.1

Q ss_pred             HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCCC---CCc--
Q 037818          123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFKS---IPA--  191 (199)
Q Consensus       123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~~---~P~--  191 (199)
                      ++..++ .....+|+|+|||+|..+..+++..++.+ ++.+|. |..++.++++     -+++++.+|..+.   .+.  
T Consensus       236 ~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~-v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~  313 (427)
T PRK10901        236 AATLLA-PQNGERVLDACAAPGGKTAHILELAPQAQ-VVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQP  313 (427)
T ss_pred             HHHHcC-CCCCCEEEEeCCCCChHHHHHHHHcCCCE-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCC
Confidence            334455 44557999999999999999999998878 999997 6667766643     2478999999862   222  


Q ss_pred             ccEEEe
Q 037818          192 ADAIFM  197 (199)
Q Consensus       192 aD~~~l  197 (199)
                      .|.|++
T Consensus       314 fD~Vl~  319 (427)
T PRK10901        314 FDRILL  319 (427)
T ss_pred             CCEEEE
Confidence            488875

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=96.85  E-value=0.0011  Score=52.67  Aligned_cols=53  Identities=19%  Similarity=0.179  Sum_probs=43.3

Q ss_pred             HHHhhhCC-CCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC
Q 037818          121 TSVLDGYN-GFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS  174 (199)
Q Consensus       121 ~~~~~~~~-~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~  174 (199)
                      +..+..+. .|-..+.+|||||++|.+...+++.|-... .+.+|. |.-|..|++
T Consensus        46 D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~-iLGvDID~~LI~~Ark  100 (288)
T KOG2899|consen   46 DPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRR-ILGVDIDPVLIQRARK  100 (288)
T ss_pred             ChhhhhccccccCcceeEeccCCcchhHHHHHHhhccce-eeEeeccHHHHHHHHH
Confidence            44555553 466779999999999999999999999999 999998 555677765

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=96.81  E-value=0.0025  Score=49.18  Aligned_cols=72  Identities=15%  Similarity=0.153  Sum_probs=48.1

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccch-HHHhcCCC-----CCCceEEeCCCCC-CCCcc-
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP-EVVGEAPS-----ILGVTHIGGDTFK-SIPAA-  192 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp-~v~~~a~~-----~~ri~~~~gd~f~-~~P~a-  192 (199)
                      +.+.++++ .-+..++||+|||.|.-+.-|+++  ... ++.+|.. ..++.+++     .-.|++...|+.+ .+|.. 
T Consensus        20 s~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~~--G~~-VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~y   95 (192)
T PF03848_consen   20 SEVLEAVP-LLKPGKALDLGCGEGRNALYLASQ--GFD-VTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEY   95 (192)
T ss_dssp             HHHHHHCT-TS-SSEEEEES-TTSHHHHHHHHT--T-E-EEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTE
T ss_pred             HHHHHHHh-hcCCCcEEEcCCCCcHHHHHHHHC--CCe-EEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCc
Confidence            34666777 555689999999999999999988  455 7788873 34444332     2349999999987 46654 


Q ss_pred             cEEE
Q 037818          193 DAIF  196 (199)
Q Consensus       193 D~~~  196 (199)
                      |+|+
T Consensus        96 D~I~   99 (192)
T PF03848_consen   96 DFIV   99 (192)
T ss_dssp             EEEE
T ss_pred             CEEE
Confidence            8875

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=96.80  E-value=0.0023  Score=53.18  Aligned_cols=71  Identities=23%  Similarity=0.287  Sum_probs=50.8

Q ss_pred             HHhhh-CCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCC-------CCCceEEeCCCCC-CCCc-
Q 037818          122 SVLDG-YNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPS-------ILGVTHIGGDTFK-SIPA-  191 (199)
Q Consensus       122 ~~~~~-~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~-------~~ri~~~~gd~f~-~~P~-  191 (199)
                      ++.+. -| |++ +.|||||+|+|.++.-.+.+.-  +++-.++-.+..+.|+.       .+||+.++|-+-+ ++|+ 
T Consensus       168 Ail~N~sD-F~~-kiVlDVGaGSGILS~FAaqAGA--~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk  243 (517)
T KOG1500|consen  168 AILENHSD-FQD-KIVLDVGAGSGILSFFAAQAGA--KKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEK  243 (517)
T ss_pred             HHHhcccc-cCC-cEEEEecCCccHHHHHHHHhCc--ceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchh
Confidence            44443 35 766 8999999999998876655432  22555666555555553       2999999999987 8999 


Q ss_pred             ccEEE
Q 037818          192 ADAIF  196 (199)
Q Consensus       192 aD~~~  196 (199)
                      +|+++
T Consensus       244 ~DviI  248 (517)
T KOG1500|consen  244 VDVII  248 (517)
T ss_pred             ccEEE
Confidence            59886

>TIGR00478 tly hemolysin TlyA family protein

Probab=96.79  E-value=0.0031  Score=50.10  Aligned_cols=58  Identities=22%  Similarity=0.151  Sum_probs=39.8

Q ss_pred             HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchH--HHhcCCCCCCce
Q 037818          120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPE--VVGEAPSILGVT  179 (199)
Q Consensus       120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~--v~~~a~~~~ri~  179 (199)
                      ...+++.++..-..++++|||||+|.++..+++. +.-+ ++.+|.-.  .....++++|+.
T Consensus        63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~-v~avD~~~~~l~~~l~~~~~v~  122 (228)
T TIGR00478        63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-GAKE-VYGVDVGYNQLAEKLRQDERVK  122 (228)
T ss_pred             HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-CCCE-EEEEeCCHHHHHHHHhcCCCee
Confidence            3455566551134579999999999999999986 4455 89999844  333455556643

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=96.72  E-value=0.0017  Score=54.01  Aligned_cols=64  Identities=19%  Similarity=0.118  Sum_probs=52.1

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCC----C---CCceEEeCCCCC-CCCc--ccEEEe
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPS----I---LGVTHIGGDTFK-SIPA--ADAIFM  197 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~----~---~ri~~~~gd~f~-~~P~--aD~~~l  197 (199)
                      +.+.|+|||||+|.++.-.+++. .-+ +..+|-.++.+.+.+    +   +.|+...|..-+ .+|.  -|+++-
T Consensus        60 ~dK~VlDVGcGtGILS~F~akAG-A~~-V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvS  133 (346)
T KOG1499|consen   60 KDKTVLDVGCGTGILSMFAAKAG-ARK-VYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVS  133 (346)
T ss_pred             CCCEEEEcCCCccHHHHHHHHhC-cce-EEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEee
Confidence            34899999999999999999999 556 899998888877764    2   678999999887 6773  388764

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=96.66  E-value=0.0022  Score=50.82  Aligned_cols=52  Identities=15%  Similarity=0.213  Sum_probs=40.4

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCC----C--CCCceEEeCCCC
Q 037818          134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAP----S--ILGVTHIGGDTF  186 (199)
Q Consensus       134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~----~--~~ri~~~~gd~f  186 (199)
                      ..+|+||||.|.+..++++++|+.. .+.++. ..++..+.    +  ..+|..+.+|--
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~n-fiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~  108 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKN-FLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAV  108 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCC-EEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHH
Confidence            6899999999999999999999999 999996 33333332    1  247777777654

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=96.64  E-value=0.0028  Score=46.04  Aligned_cols=52  Identities=19%  Similarity=0.159  Sum_probs=39.9

Q ss_pred             eEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC
Q 037818          135 QLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK  187 (199)
Q Consensus       135 ~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~  187 (199)
                      +++|||+|.|.++..+++.+|..+ ++.+|- |...+.++++      ++++++...+.+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~-v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~   59 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGR-VIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD   59 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCE-EEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence            489999999999999999999999 999996 5666555431      446666655553

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=96.61  E-value=0.0011  Score=56.57  Aligned_cols=63  Identities=14%  Similarity=0.056  Sum_probs=48.2

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCC----cccEEEec
Q 037818          133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIP----AADAIFMK  198 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P----~aD~~~l~  198 (199)
                      ..+|+|++||+|.++..++..  ..+ ++.+|. |..++.++++      +++++..+|+.+..+    ..|++++.
T Consensus       234 ~~~vLDL~cG~G~~~l~la~~--~~~-v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D  307 (374)
T TIGR02085       234 VTQMWDLFCGVGGFGLHCAGP--DTQ-LTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN  307 (374)
T ss_pred             CCEEEEccCCccHHHHHHhhc--CCe-EEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC
Confidence            368999999999999999854  456 889996 7777777653      579999999865222    24888763

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=96.61  E-value=0.0011  Score=57.42  Aligned_cols=72  Identities=18%  Similarity=0.331  Sum_probs=53.2

Q ss_pred             HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCC---CC--
Q 037818          123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKS---IP--  190 (199)
Q Consensus       123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~---~P--  190 (199)
                      +.+.+. ..+..+|+|+|||+|.++..+++...  + ++.+|. |+.++.|+++      ++++++.+|..+.   ++  
T Consensus       284 ~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~~--~-V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~  359 (431)
T TIGR00479       284 ALEALE-LQGEELVVDAYCGVGTFTLPLAKQAK--S-VVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWA  359 (431)
T ss_pred             HHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhCC--E-EEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhc
Confidence            334344 45557999999999999999998753  5 888997 7888877753      6899999998642   21  


Q ss_pred             -c-ccEEEec
Q 037818          191 -A-ADAIFMK  198 (199)
Q Consensus       191 -~-aD~~~l~  198 (199)
                       . .|++++.
T Consensus       360 ~~~~D~vi~d  369 (431)
T TIGR00479       360 GQIPDVLLLD  369 (431)
T ss_pred             CCCCCEEEEC
Confidence             1 3888763

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=96.60  E-value=0.0043  Score=49.02  Aligned_cols=64  Identities=16%  Similarity=-0.016  Sum_probs=45.1

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccch-HHHhcCCCC-----CCceEEeCCCCCC--CC-c-ccEEEec
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP-EVVGEAPSI-----LGVTHIGGDTFKS--IP-A-ADAIFMK  198 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp-~v~~~a~~~-----~ri~~~~gd~f~~--~P-~-aD~~~l~  198 (199)
                      ...+|||||||+|.++..+++.  ..+ ++.+|.. ..++.++++     .+++++.+|+.+-  .+ . .|++++.
T Consensus        48 ~~~~vLdiG~G~G~~~~~l~~~--~~~-v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~  121 (233)
T PRK05134         48 FGKRVLDVGCGGGILSESMARL--GAD-VTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCM  121 (233)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHc--CCe-EEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEh
Confidence            4578999999999999999886  457 8889974 555555431     3577887777542  12 2 3988764

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=96.48  E-value=0.0017  Score=52.12  Aligned_cols=66  Identities=27%  Similarity=0.301  Sum_probs=50.4

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----------CCCceEEeCCCCC---CCCc-c-cE
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----------ILGVTHIGGDTFK---SIPA-A-DA  194 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----------~~ri~~~~gd~f~---~~P~-a-D~  194 (199)
                      .+.++||=||||.|..++++++..|-.+ .+++|+ |.|++.+++          .+|++.+.+|-+.   ..+. . |+
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~-i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv  153 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPPVES-ITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV  153 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT-SE-EEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCCcce-EEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence            4678999999999999999986665666 999998 788888764          2799999998764   4444 4 88


Q ss_pred             EEe
Q 037818          195 IFM  197 (199)
Q Consensus       195 ~~l  197 (199)
                      +++
T Consensus       154 Ii~  156 (246)
T PF01564_consen  154 IIV  156 (246)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            775

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=96.44  E-value=0.0061  Score=49.78  Aligned_cols=67  Identities=19%  Similarity=0.218  Sum_probs=51.6

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCC--CCeeeeccc-hHHHhcCCC------CCC-ceEEeCCCCCC------CCcccE
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRF--ICEGINFDL-PEVVGEAPS------ILG-VTHIGGDTFKS------IPAADA  194 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~--l~~~~v~Dl-p~v~~~a~~------~~r-i~~~~gd~f~~------~P~aD~  194 (199)
                      ...-+||||.||+|.+....++.+|.  .+ +.+-|. |..++.+++      ... ++|..+|-|+.      .|.-++
T Consensus       134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~-i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l  212 (311)
T PF12147_consen  134 GRPVRILDIAAGHGRYVLDALEKHPERPDS-ILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTL  212 (311)
T ss_pred             CCceEEEEeccCCcHHHHHHHHhCCCCCce-EEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCE
Confidence            35679999999999999999999998  66 888886 667777664      244 49999999973      232377


Q ss_pred             EEec
Q 037818          195 IFMK  198 (199)
Q Consensus       195 ~~l~  198 (199)
                      ++++
T Consensus       213 ~iVs  216 (311)
T PF12147_consen  213 AIVS  216 (311)
T ss_pred             EEEe
Confidence            6654

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=96.36  E-value=0.0084  Score=52.26  Aligned_cols=67  Identities=18%  Similarity=0.154  Sum_probs=50.1

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCc--ccEEEe
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPA--ADAIFM  197 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~--aD~~~l  197 (199)
                      .....+|+|+|||+|..+..+++..+ .-+ ++.+|. |..++.++++      ++|+++.+|..+..|.  .|+|++
T Consensus       248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~-V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~  324 (445)
T PRK14904        248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQ-ITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILL  324 (445)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhCCCcE-EEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEE
Confidence            34457999999999999998888764 456 899997 5666665542      5789999999864333  498886

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=96.34  E-value=0.01  Score=48.02  Aligned_cols=68  Identities=19%  Similarity=0.344  Sum_probs=50.1

Q ss_pred             HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCC----CCCCceEEeCCCCC-CCCc
Q 037818          120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAP----SILGVTHIGGDTFK-SIPA  191 (199)
Q Consensus       120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~----~~~ri~~~~gd~f~-~~P~  191 (199)
                      +..+++..+ ......|+|||.|.|.+...|++..  -+ .++++. |.-++..+    ..+|++.+.+|+++ +.+.
T Consensus        19 ~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~--~~-v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~   92 (262)
T PF00398_consen   19 ADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRG--KR-VIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYD   92 (262)
T ss_dssp             HHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHS--SE-EEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGG
T ss_pred             HHHHHHhcC-CCCCCEEEEeCCCCccchhhHhccc--Cc-ceeecCcHhHHHHHHHHhhhcccceeeecchhccccHH
Confidence            456677776 6677999999999999999999999  44 667775 33333332    35899999999997 4443

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=96.32  E-value=0.0054  Score=48.01  Aligned_cols=64  Identities=14%  Similarity=-0.024  Sum_probs=46.0

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC-C--CCc-ccEEEec
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK-S--IPA-ADAIFMK  198 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~-~--~P~-aD~~~l~  198 (199)
                      +..+|+|+|||+|.++..+++..  .+ ++.+|+ |..++.+++.      .++++..+|+.+ +  .|. .|++++.
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~--~~-v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~  119 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLG--AN-VTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCM  119 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcC--Ce-EEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEeh
Confidence            35799999999999999998865  35 788887 4555655531      268888888764 2  223 4988764

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=96.27  E-value=0.0082  Score=44.05  Aligned_cols=38  Identities=24%  Similarity=0.448  Sum_probs=30.4

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhc
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGE  171 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~  171 (199)
                      ....+|||||||.|.++..+.+..+  + .+.+|. |..++.
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~--~-~~g~D~~~~~~~~   59 (161)
T PF13489_consen   21 KPGKRVLDIGCGTGSFLRALAKRGF--E-VTGVDISPQMIEK   59 (161)
T ss_dssp             TTTSEEEEESSTTSHHHHHHHHTTS--E-EEEEESSHHHHHH
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCC--E-EEEEECCHHHHhh
Confidence            4568999999999999999966655  7 899997 455544

...

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=96.26  E-value=0.0031  Score=58.06  Aligned_cols=65  Identities=14%  Similarity=0.048  Sum_probs=50.6

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC--------CCceEEeCCCCCCC---Cc-ccEEEec
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI--------LGVTHIGGDTFKSI---PA-ADAIFMK  198 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~--------~ri~~~~gd~f~~~---P~-aD~~~l~  198 (199)
                      +.++|||+|||+|.++..+++. ..-+ ++.+|. +..++.++++        ++++++.+|.++.+   +. -|+|++.
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~-V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD  615 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALG-GAKS-TTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID  615 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHC-CCCE-EEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence            3579999999999999999986 3346 899997 6777777652        48999999998632   33 4998873

>TIGR00095 RNA methyltransferase, RsmD family

Probab=96.22  E-value=0.0027  Score=48.96  Aligned_cols=53  Identities=9%  Similarity=-0.044  Sum_probs=43.1

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC
Q 037818          133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK  187 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~  187 (199)
                      ..+|+|++||+|.++.+++.+... + ++.+|. +..++.++++       ++++++.+|.++
T Consensus        50 g~~vLDLfaGsG~lglea~srga~-~-v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~  110 (189)
T TIGR00095        50 GAHLLDVFAGSGLLGEEALSRGAK-V-AFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALR  110 (189)
T ss_pred             CCEEEEecCCCcHHHHHHHhCCCC-E-EEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHH
Confidence            378999999999999999999874 6 888887 5666655542       578999999975

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=96.21  E-value=0.004  Score=53.47  Aligned_cols=66  Identities=18%  Similarity=0.134  Sum_probs=49.0

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC--------CCceEEeCCCCCCC------Cc-ccE
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI--------LGVTHIGGDTFKSI------PA-ADA  194 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~--------~ri~~~~gd~f~~~------P~-aD~  194 (199)
                      .+.++|||+|||+|.++.+.+.. ...+ ++.+|. |..++.++++        ++++++.+|.|+.+      .. .|+
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~-V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDl  296 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALMG-GCSQ-VVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV  296 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHhC-CCCE-EEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCE
Confidence            34589999999999998876643 3446 899997 6667766642        37999999999732      12 499


Q ss_pred             EEec
Q 037818          195 IFMK  198 (199)
Q Consensus       195 ~~l~  198 (199)
                      +++.
T Consensus       297 VilD  300 (396)
T PRK15128        297 IVMD  300 (396)
T ss_pred             EEEC
Confidence            9874

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=96.20  E-value=0.0037  Score=50.20  Aligned_cols=61  Identities=16%  Similarity=0.052  Sum_probs=44.9

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC--------C----CceEEeCCCCCCCCcccEEEe
Q 037818          134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI--------L----GVTHIGGDTFKSIPAADAIFM  197 (199)
Q Consensus       134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~--------~----ri~~~~gd~f~~~P~aD~~~l  197 (199)
                      .+|||||||.|.++..|++..  .. ++.+|. +..++.|++.        .    |+++...|.-+-.+.-|+|+.
T Consensus        91 ~~ilDvGCGgGLLSepLArlg--a~-V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvc  164 (282)
T KOG1270|consen   91 MKILDVGCGGGLLSEPLARLG--AQ-VTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVC  164 (282)
T ss_pred             ceEEEeccCccccchhhHhhC--Ce-eEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeee
Confidence            679999999999999999988  34 668897 6777777652        2    477776666554444577653

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=96.18  E-value=0.012  Score=46.46  Aligned_cols=64  Identities=22%  Similarity=0.229  Sum_probs=46.6

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCC---C---------------CCCceEEeCCCCCCCC
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAP---S---------------ILGVTHIGGDTFKSIP  190 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~---~---------------~~ri~~~~gd~f~~~P  190 (199)
                      .....+|++.|||.|.-+..|+++  ..+ ++.+|+ |..++.+.   .               .++|++..||||+--|
T Consensus        35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~-VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~  111 (218)
T PF05724_consen   35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHD-VVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPP  111 (218)
T ss_dssp             TSTSEEEEETTTTTSCHHHHHHHT--TEE-EEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGG
T ss_pred             CCCCCeEEEeCCCChHHHHHHHHC--CCe-EEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCCh
Confidence            445579999999999999999987  467 999998 45565541   0               1579999999998322


Q ss_pred             c----ccEEE
Q 037818          191 A----ADAIF  196 (199)
Q Consensus       191 ~----aD~~~  196 (199)
                      .    -|+++
T Consensus       112 ~~~g~fD~iy  121 (218)
T PF05724_consen  112 EDVGKFDLIY  121 (218)
T ss_dssp             SCHHSEEEEE
T ss_pred             hhcCCceEEE
Confidence            2    27765

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=96.11  E-value=0.021  Score=46.06  Aligned_cols=70  Identities=23%  Similarity=0.410  Sum_probs=53.9

Q ss_pred             HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc--hHHHhcC-CCCCCceEEeCCCCC-CCCc
Q 037818          120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL--PEVVGEA-PSILGVTHIGGDTFK-SIPA  191 (199)
Q Consensus       120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl--p~v~~~a-~~~~ri~~~~gd~f~-~~P~  191 (199)
                      ...+++..+ -.....|++||.|.|.+...|+++...+. ++=.|.  -+++... ...++++.+.||+.+ ++|.
T Consensus        19 ~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~-aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~   92 (259)
T COG0030          19 IDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAARVT-AIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPS   92 (259)
T ss_pred             HHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcCeEE-EEEeCHHHHHHHHHhcccccceEEEeCchhcCcchh
Confidence            456777766 55578999999999999999999999988 776664  2333322 246899999999997 6774

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=96.11  E-value=0.0041  Score=48.58  Aligned_cols=61  Identities=20%  Similarity=0.272  Sum_probs=46.4

Q ss_pred             EEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-------CCCceEEeCCCCCCCCc---ccEEEe
Q 037818          136 LVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-------ILGVTHIGGDTFKSIPA---ADAIFM  197 (199)
Q Consensus       136 vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-------~~ri~~~~gd~f~~~P~---aD~~~l  197 (199)
                      |.||||-||.+...|+++...-+ ++..|. |.-++.|++       .+||++.-||=++.++.   .|++++
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~-~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivI   72 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPK-AIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVI   72 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEE-EEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEE
T ss_pred             CceeccchhHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEE
Confidence            68999999999999999999999 999997 555555553       38999999998887665   467765

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=96.07  E-value=0.0081  Score=53.25  Aligned_cols=65  Identities=14%  Similarity=0.153  Sum_probs=46.9

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc--hHHHhcCCC-----CCCceEEeCCCC---CCCCcc--cEEEe
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL--PEVVGEAPS-----ILGVTHIGGDTF---KSIPAA--DAIFM  197 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl--p~v~~~a~~-----~~ri~~~~gd~f---~~~P~a--D~~~l  197 (199)
                      +...+||||||.|.++.++++++|+.. .+.+|.  +.+....+.     ..++.++.+|+-   .-+|.+  |-+++
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~-~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i  423 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDAL-FIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYI  423 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCC-EEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEE
Confidence            358999999999999999999999999 999996  333322221     367777777763   235652  55554

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=95.97  E-value=0.024  Score=47.57  Aligned_cols=63  Identities=19%  Similarity=0.220  Sum_probs=50.3

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCCCCceEEeCCCCCCCC-c--ccEEE
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFKSIP-A--ADAIF  196 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~~ri~~~~gd~f~~~P-~--aD~~~  196 (199)
                      ....++||||+++|.+...++++.  .+ ++.+|.-..-......+||+++.+|-|...| .  .|+++
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG--~~-V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvV  275 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRG--MF-VTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLV  275 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcC--CE-EEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEE
Confidence            456899999999999999999984  57 9999966555555667999999999997555 2  26655

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=95.94  E-value=0.0016  Score=48.91  Aligned_cols=62  Identities=21%  Similarity=0.263  Sum_probs=44.1

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCC---CC--c-ccEEEec
Q 037818          134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKS---IP--A-ADAIFMK  198 (199)
Q Consensus       134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~---~P--~-aD~~~l~  198 (199)
                      +.|+|+-||.|.-++++++.+.+   ++-+|. |..++.++-+       +||.++.||+++-   +.  . .|+++++
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~~---Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS   76 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFDR---VIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS   76 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT-E---EEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred             CEEEEeccCcCHHHHHHHHhCCe---EEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence            47999999999999999999765   556776 6666666642       7999999999962   33  2 4999875

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=95.92  E-value=0.0056  Score=48.59  Aligned_cols=39  Identities=15%  Similarity=0.092  Sum_probs=33.6

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC
Q 037818          134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI  175 (199)
Q Consensus       134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~  175 (199)
                      .+|||||||-|.++..+++..  .+ ++..|. ++.|+.|+..
T Consensus        61 ~~vLDvGCGgG~Lse~mAr~G--a~-VtgiD~se~~I~~Ak~h  100 (243)
T COG2227          61 LRVLDVGCGGGILSEPLARLG--AS-VTGIDASEKPIEVAKLH  100 (243)
T ss_pred             CeEEEecCCccHhhHHHHHCC--Ce-eEEecCChHHHHHHHHh
Confidence            799999999999999999998  67 889997 5677777753

>PLN02476 O-methyltransferase

Probab=95.91  E-value=0.0067  Score=49.56  Aligned_cols=67  Identities=16%  Similarity=0.133  Sum_probs=52.6

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCC--------c-
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIP--------A-  191 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P--------~-  191 (199)
                      ..+.++||+||.++|..+..+++..| +-+ .+-+|. |+..+.|+++       ++|+++.||..+.+|        . 
T Consensus       116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~-V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~  194 (278)
T PLN02476        116 ILGAERCIEVGVYTGYSSLAVALVLPESGC-LVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSS  194 (278)
T ss_pred             hcCCCeEEEecCCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence            55679999999999999999999876 455 788887 5666777652       799999999876332        2 


Q ss_pred             ccEEEe
Q 037818          192 ADAIFM  197 (199)
Q Consensus       192 aD~~~l  197 (199)
                      -|++++
T Consensus       195 FD~VFI  200 (278)
T PLN02476        195 YDFAFV  200 (278)
T ss_pred             CCEEEE
Confidence            388876

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=95.91  E-value=0.036  Score=44.94  Aligned_cols=75  Identities=17%  Similarity=0.329  Sum_probs=54.9

Q ss_pred             HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc---hHHHhcCCCC---CCceEEeCCCCC-CCCcc
Q 037818          120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL---PEVVGEAPSI---LGVTHIGGDTFK-SIPAA  192 (199)
Q Consensus       120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl---p~v~~~a~~~---~ri~~~~gd~f~-~~P~a  192 (199)
                      +..|++.-+ ......||+||.|+|.+...++++--.+= ++=.|-   +++....+-.   .+...+.||+++ ++|--
T Consensus        47 ~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~kkVv-A~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~f  124 (315)
T KOG0820|consen   47 IDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAGKKVV-AVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPRF  124 (315)
T ss_pred             HHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhcCeEE-EEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCccc
Confidence            346666666 67778999999999999999999876655 444442   4444444433   689999999997 78886


Q ss_pred             cEEE
Q 037818          193 DAIF  196 (199)
Q Consensus       193 D~~~  196 (199)
                      |+.+
T Consensus       125 d~cV  128 (315)
T KOG0820|consen  125 DGCV  128 (315)
T ss_pred             ceee
Confidence            6554

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=95.86  E-value=0.0075  Score=47.40  Aligned_cols=55  Identities=18%  Similarity=0.186  Sum_probs=40.4

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCCCC--ceEEeCCCCCCCC
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSILG--VTHIGGDTFKSIP  190 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~~r--i~~~~gd~f~~~P  190 (199)
                      ....|||||||+|..+..+...-  .. -+.+|. |+.++.|.+ ..  =.++-+||=+.+|
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~G--h~-wiGvDiSpsML~~a~~-~e~egdlil~DMG~Glp  107 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDSG--HQ-WIGVDISPSMLEQAVE-RELEGDLILCDMGEGLP  107 (270)
T ss_pred             CCcEEEEeccCCCcchheeccCC--ce-EEeecCCHHHHHHHHH-hhhhcCeeeeecCCCCC
Confidence            36899999999999888776554  55 789996 888888875 22  2466677766443

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=95.85  E-value=0.027  Score=44.67  Aligned_cols=55  Identities=15%  Similarity=-0.050  Sum_probs=42.7

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC------------------CCCceEEeCCCCCC
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS------------------ILGVTHIGGDTFKS  188 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~------------------~~ri~~~~gd~f~~  188 (199)
                      ....+|++.|||.|.-+.-|++.  ..+ ++.+|+ |..++.+.+                  ..+|++..||||+-
T Consensus        42 ~~~~rvLvPgCGkg~D~~~LA~~--G~~-V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l  115 (226)
T PRK13256         42 NDSSVCLIPMCGCSIDMLFFLSK--GVK-VIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNL  115 (226)
T ss_pred             CCCCeEEEeCCCChHHHHHHHhC--CCc-EEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCC
Confidence            34479999999999999999885  567 889998 444554311                  26899999999983

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=95.71  E-value=0.017  Score=50.11  Aligned_cols=74  Identities=14%  Similarity=0.086  Sum_probs=52.5

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCC-C--C
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKS-I--P  190 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~-~--P  190 (199)
                      .++..++ .....+|+|+|||+|..+..+++..|..+ .+.+|. +..++.++++       .++++..+|.... .  +
T Consensus       229 ~~~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~-v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~  306 (426)
T TIGR00563       229 WVATWLA-PQNEETILDACAAPGGKTTHILELAPQAQ-VVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAE  306 (426)
T ss_pred             HHHHHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCe-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccccccccccc
Confidence            3444455 45558999999999999999999998777 899997 6666666542       2345577887652 1  2


Q ss_pred             c--ccEEEe
Q 037818          191 A--ADAIFM  197 (199)
Q Consensus       191 ~--aD~~~l  197 (199)
                      .  .|.+++
T Consensus       307 ~~~fD~Vll  315 (426)
T TIGR00563       307 NEQFDRILL  315 (426)
T ss_pred             ccccCEEEE
Confidence            2  488875

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=95.70  E-value=0.014  Score=42.74  Aligned_cols=57  Identities=21%  Similarity=0.252  Sum_probs=41.9

Q ss_pred             CCCcceEEEecCCccHHHHHHHHH----CCCCCeeeeccc-hHHHhcCCC--------C-CCceEEeCCCCC
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQK----HRFICEGINFDL-PEVVGEAPS--------I-LGVTHIGGDTFK  187 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~----~P~l~~~~v~Dl-p~v~~~a~~--------~-~ri~~~~gd~f~  187 (199)
                      -.+..+|||+|+|.|.++..+...    .|+++ ++.+|. |+.++.+..        . .++++..+++.+
T Consensus        23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   93 (141)
T PF13679_consen   23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLR-VLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIAD   93 (141)
T ss_pred             cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCe-EEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhh
Confidence            356789999999999999999982    38889 999996 444444432        1 567777776653

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=95.67  E-value=0.022  Score=49.55  Aligned_cols=73  Identities=11%  Similarity=-0.032  Sum_probs=52.9

Q ss_pred             HhhhCCCCCCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCC-----C
Q 037818          123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKS-----I  189 (199)
Q Consensus       123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~-----~  189 (199)
                      ++..++ .....+|+|+|+|+|..+..+++... .-+ .+.+|. ++-++.++++      ++|+++.+|..+.     .
T Consensus       244 ~~~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~g~-v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~  321 (434)
T PRK14901        244 VAPLLD-PQPGEVILDACAAPGGKTTHIAELMGDQGE-IWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQ  321 (434)
T ss_pred             HHHHhC-CCCcCEEEEeCCCCchhHHHHHHHhCCCce-EEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccccc
Confidence            334454 44558999999999999999999864 456 899997 6666666542      5689999998752     1


Q ss_pred             Cc--ccEEEe
Q 037818          190 PA--ADAIFM  197 (199)
Q Consensus       190 P~--aD~~~l  197 (199)
                      +.  .|.|++
T Consensus       322 ~~~~fD~Vl~  331 (434)
T PRK14901        322 WRGYFDRILL  331 (434)
T ss_pred             ccccCCEEEE
Confidence            12  498886

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=95.66  E-value=0.024  Score=44.22  Aligned_cols=90  Identities=12%  Similarity=0.093  Sum_probs=47.9

Q ss_pred             cccccCchhHH----HHHHHHhccchhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhc
Q 037818           96 SYYGKMPEMNG----LMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGE  171 (199)
Q Consensus        96 e~~~~~~~~~~----~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~  171 (199)
                      +.+.++|+.-.    -|++.+..|...+.+.+++.+..-.+...|.|.|||.+.++..+.+   ..+ +.-|||=..   
T Consensus        32 ~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~---~~~-V~SfDLva~---  104 (219)
T PF05148_consen   32 KLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN---KHK-VHSFDLVAP---  104 (219)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S-------EEEEESS-S---
T ss_pred             HHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc---Cce-EEEeeccCC---
Confidence            34445555443    3566666666666677777654233446999999999999976542   346 778888443   


Q ss_pred             CCCCCCceEEeCCCCC-CCCcc--cEEEe
Q 037818          172 APSILGVTHIGGDTFK-SIPAA--DAIFM  197 (199)
Q Consensus       172 a~~~~ri~~~~gd~f~-~~P~a--D~~~l  197 (199)
                         +++  ..++|+-. |++..  |++++
T Consensus       105 ---n~~--Vtacdia~vPL~~~svDv~Vf  128 (219)
T PF05148_consen  105 ---NPR--VTACDIANVPLEDESVDVAVF  128 (219)
T ss_dssp             ---STT--EEES-TTS-S--TT-EEEEEE
T ss_pred             ---CCC--EEEecCccCcCCCCceeEEEE
Confidence               233  45688864 66663  87764

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=95.50  E-value=0.011  Score=46.10  Aligned_cols=68  Identities=18%  Similarity=0.239  Sum_probs=51.6

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCC-CCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCC---------c
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIP---------A  191 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P---------~  191 (199)
                      ..+.++||+||++.|.-+..+++..|. .+ .+-+|. |+..+.|+++       +||+++.||-.+-+|         .
T Consensus        43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~-i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~  121 (205)
T PF01596_consen   43 LTRPKRVLEIGTFTGYSALWLAEALPEDGK-ITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQ  121 (205)
T ss_dssp             HHT-SEEEEESTTTSHHHHHHHHTSTTTSE-EEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTS
T ss_pred             hcCCceEEEeccccccHHHHHHHhhcccce-EEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCc
Confidence            346789999999999999999999884 66 888887 6667777642       799999999875322         1


Q ss_pred             ccEEEec
Q 037818          192 ADAIFMK  198 (199)
Q Consensus       192 aD~~~l~  198 (199)
                      -|++++-
T Consensus       122 fD~VFiD  128 (205)
T PF01596_consen  122 FDFVFID  128 (205)
T ss_dssp             EEEEEEE
T ss_pred             eeEEEEc
Confidence            3888863

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=95.49  E-value=0.0067  Score=46.09  Aligned_cols=47  Identities=19%  Similarity=0.263  Sum_probs=36.2

Q ss_pred             HHHhhhCCCCC--CcceEEEecCCccHHHHHHHHHC-CCCCeeeeccchHH
Q 037818          121 TSVLDGYNGFK--GVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDLPEV  168 (199)
Q Consensus       121 ~~~~~~~~~~~--~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dlp~v  168 (199)
                      ..+.+.|+.+.  +..++||+|+++|.|+..++++. +..+ ++.+|+...
T Consensus        10 ~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~-v~avDl~~~   59 (181)
T PF01728_consen   10 YEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGR-VVAVDLGPM   59 (181)
T ss_dssp             HHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEE-EEEEESSST
T ss_pred             HHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccce-EEEEecccc
Confidence            35556666333  45899999999999999999998 7788 999998655

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities

Probab=95.49  E-value=0.0044  Score=37.27  Aligned_cols=38  Identities=26%  Similarity=0.303  Sum_probs=30.7

Q ss_pred             ccccccCC--CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           10 GKKVRLAN--TPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        10 glf~~L~~--g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      .|.+.|.+  ++.|+.|||+++|+  +..  .+.|+|..|+..|
T Consensus         7 ~iL~~l~~~~~~~t~~eia~~~gl--~~s--tv~r~L~tL~~~g   46 (52)
T PF09339_consen    7 RILEALAESGGPLTLSEIARALGL--PKS--TVHRLLQTLVEEG   46 (52)
T ss_dssp             HHHHCHHCTBSCEEHHHHHHHHTS---HH--HHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCc
Confidence            45667764  56899999999999  555  8999999999877

One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=95.42  E-value=0.063  Score=43.05  Aligned_cols=88  Identities=13%  Similarity=0.098  Sum_probs=65.8

Q ss_pred             HHHHHhccchhh----HHHHhhhCCCCCCcceEEEecCCccHHHHHHHH-HCCCCCeeeeccc-hHHHhcCCCC------
Q 037818          108 MRKAMSGVSVPF----ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQ-KHRFICEGINFDL-PEVVGEAPSI------  175 (199)
Q Consensus       108 f~~~m~~~~~~~----~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~-~~P~l~~~~v~Dl-p~v~~~a~~~------  175 (199)
                      |...|...++..    +..|+...+ .+...+|+|.|-|+|.++..|++ -.|.=+ .+.+|. ++-.+.|+++      
T Consensus        67 ~~~~~~R~tQiIyPKD~~~I~~~~g-i~pg~rVlEAGtGSG~lt~~La~~vg~~G~-v~tyE~r~d~~k~A~~Nl~~~~l  144 (256)
T COG2519          67 YLLSMKRRTQIIYPKDAGYIVARLG-ISPGSRVLEAGTGSGALTAYLARAVGPEGH-VTTYEIREDFAKTARENLSEFGL  144 (256)
T ss_pred             HHHhCcCCCceecCCCHHHHHHHcC-CCCCCEEEEcccCchHHHHHHHHhhCCCce-EEEEEecHHHHHHHHHHHHHhcc
Confidence            444466555543    335666666 77779999999999999999997 677788 888985 6667777653      


Q ss_pred             -CCceEEeCCCCCC-CCc-ccEEEe
Q 037818          176 -LGVTHIGGDTFKS-IPA-ADAIFM  197 (199)
Q Consensus       176 -~ri~~~~gd~f~~-~P~-aD~~~l  197 (199)
                       ++|++..+|+.+. .+. .|++++
T Consensus       145 ~d~v~~~~~Dv~~~~~~~~vDav~L  169 (256)
T COG2519         145 GDRVTLKLGDVREGIDEEDVDAVFL  169 (256)
T ss_pred             ccceEEEeccccccccccccCEEEE
Confidence             7799999999974 343 488876

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.42  E-value=0.022  Score=45.09  Aligned_cols=67  Identities=13%  Similarity=0.246  Sum_probs=44.8

Q ss_pred             hHHHHHHHHhc---cchhh-HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchH-HHhcCCC
Q 037818          104 MNGLMRKAMSG---VSVPF-ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPE-VVGEAPS  174 (199)
Q Consensus       104 ~~~~f~~~m~~---~~~~~-~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~-v~~~a~~  174 (199)
                      .++.|...+-.   |+.+. ...++...+ ....++++|+|||+|..+.+|-..--+++   .+|+.+ .++.|.+
T Consensus        94 ~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a~~lt---GvDiS~nMl~kA~e  165 (287)
T COG4976          94 YAERFDHILVDKLGYSVPELLAEMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMADRLT---GVDISENMLAKAHE  165 (287)
T ss_pred             HHHHHHHHHHHHhcCccHHHHHHHHHhcc-CCccceeeecccCcCcccHhHHHHHhhcc---CCchhHHHHHHHHh
Confidence            45567766643   22221 334455555 45589999999999999999988877777   688853 4555544

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=95.41  E-value=0.014  Score=49.43  Aligned_cols=51  Identities=16%  Similarity=0.080  Sum_probs=42.4

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC
Q 037818          134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK  187 (199)
Q Consensus       134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~  187 (199)
                      .+++|++||+|.++..+.+...  + ++.+|. ++.++.++++      ++++++.+|..+
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~~--~-v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~  256 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNFR--R-VLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE  256 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhCC--E-EEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence            4699999999999999998874  6 889996 6777777753      579999999875

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=95.22  E-value=0.037  Score=48.13  Aligned_cols=90  Identities=11%  Similarity=0.036  Sum_probs=58.6

Q ss_pred             HHHHHHHhccchhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCCC------CC
Q 037818          106 GLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPSI------LG  177 (199)
Q Consensus       106 ~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~~------~r  177 (199)
                      ..|..+.-.........+....+ .....+|+|+|+|+|..+..+++.. +.-+ ++.+|+ +.-++.++++      ++
T Consensus       212 ~~~~~G~~~~Qd~~s~~~~~~l~-~~~g~~VLD~cagpGgkt~~la~~~~~~g~-V~a~Dis~~rl~~~~~n~~r~g~~~  289 (431)
T PRK14903        212 RVIKDGLATVQGESSQIVPLLME-LEPGLRVLDTCAAPGGKTTAIAELMKDQGK-ILAVDISREKIQLVEKHAKRLKLSS  289 (431)
T ss_pred             hHHHCCeEEEECHHHHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHHHHcCCCe
Confidence            34544443332332223333444 4556799999999999999999886 4567 999998 5666665542      46


Q ss_pred             ceEEeCCCCC-C--CCc-ccEEEe
Q 037818          178 VTHIGGDTFK-S--IPA-ADAIFM  197 (199)
Q Consensus       178 i~~~~gd~f~-~--~P~-aD~~~l  197 (199)
                      |+++.+|..+ +  .+. .|.|++
T Consensus       290 v~~~~~Da~~l~~~~~~~fD~Vl~  313 (431)
T PRK14903        290 IEIKIADAERLTEYVQDTFDRILV  313 (431)
T ss_pred             EEEEECchhhhhhhhhccCCEEEE
Confidence            8899999865 2  222 388875

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=95.21  E-value=0.054  Score=43.91  Aligned_cols=67  Identities=15%  Similarity=0.085  Sum_probs=48.8

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCC-CCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC-C--CCcccEEEe
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK-S--IPAADAIFM  197 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~-~--~P~aD~~~l  197 (199)
                      -....+|+|+|+|+|..+..+++...+ -+ ++.+|. +..++.++++      .+|+++.+|... +  .+..|+|++
T Consensus        69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~-v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~  146 (264)
T TIGR00446        69 PDPPERVLDMAAAPGGKTTQISALMKNEGA-IVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILL  146 (264)
T ss_pred             CCCcCEEEEECCCchHHHHHHHHHcCCCCE-EEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEE
Confidence            344579999999999999999998764 45 899997 5666555532      568888888653 2  223588875

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=95.19  E-value=0.019  Score=48.69  Aligned_cols=51  Identities=14%  Similarity=0.078  Sum_probs=41.9

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC
Q 037818          134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK  187 (199)
Q Consensus       134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~  187 (199)
                      .+|+|++||+|.++..+++...  + ++.+|. +..++.++++      ++++++.+|.++
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~~--~-v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~  265 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNFR--R-VLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE  265 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhCC--E-EEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence            4799999999999999998865  5 888886 6677766653      589999999875

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=95.01  E-value=0.035  Score=45.77  Aligned_cols=33  Identities=27%  Similarity=0.355  Sum_probs=27.6

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL  165 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl  165 (199)
                      +++ ++|+|||||.|.++..++++.|..  ++.+|-
T Consensus       114 L~g-k~VLDIGC~nGY~~frM~~~GA~~--ViGiDP  146 (315)
T PF08003_consen  114 LKG-KRVLDIGCNNGYYSFRMLGRGAKS--VIGIDP  146 (315)
T ss_pred             cCC-CEEEEecCCCcHHHHHHhhcCCCE--EEEECC
Confidence            544 899999999999999999997763  577773

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=94.98  E-value=0.058  Score=49.81  Aligned_cols=77  Identities=16%  Similarity=0.044  Sum_probs=54.5

Q ss_pred             HHHHhhhCCCC-CCcceEEEecCCccHHHHHHHHHC----C--------------------------------------C
Q 037818          120 ITSVLDGYNGF-KGVKQLVDVGGSAGDCLRMILQKH----R--------------------------------------F  156 (199)
Q Consensus       120 ~~~~~~~~~~~-~~~~~vvDvGGG~G~~~~~l~~~~----P--------------------------------------~  156 (199)
                      +..++..-. | .+...++|-.||+|+++++.+...    |                                      .
T Consensus       178 Aaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~  256 (702)
T PRK11783        178 AAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELP  256 (702)
T ss_pred             HHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccC
Confidence            445555554 7 456899999999999999887631    1                                      2


Q ss_pred             CCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC-CCCc----ccEEEec
Q 037818          157 ICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK-SIPA----ADAIFMK  198 (199)
Q Consensus       157 l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~-~~P~----aD~~~l~  198 (199)
                      .+ .+.+|. |..++.|+.+       ++|++..+|+++ +.|.    .|+++.+
T Consensus       257 ~~-i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtN  310 (702)
T PRK11783        257 SK-FYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISN  310 (702)
T ss_pred             ce-EEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEEC
Confidence            35 788886 7888877753       679999999986 3331    3887654

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=94.94  E-value=1.1  Score=36.86  Aligned_cols=146  Identities=16%  Similarity=0.132  Sum_probs=81.2

Q ss_pred             HHHHcCCCCCCCc--chHHHHHHHHhhCCCCChHHHHHHhcChhhHhhhhhHHHHhhCCCCChhhhhhCCCcccccccCc
Q 037818           25 ILTRILPSGDGDA--ENLQRILRLLTSYGGLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMP  102 (199)
Q Consensus        25 LA~~~~~~~~~~~--~~l~rlL~~l~~~g~~~~~~~~~~~~~~~~~~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~  102 (199)
                      |.+++|+..++.+  ...+|+-+.+...|=.++..++.....+.--.-|..|-+.|..+. +-|            -++|
T Consensus        34 i~~~~Gi~~~~~k~~~l~~rl~~r~~~~g~~s~~~y~~~L~~~~~~~e~~~li~~ltine-T~F------------FRd~  100 (287)
T PRK10611         34 IYQRAGIVLADHKREMVYNRLVRRLRSLGLNDFGQYLALLESNQNSAEWQAFINALTTNL-TAF------------FREA  100 (287)
T ss_pred             HHHHHCCCCCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHhhCCC-CCc------------cCCc
Confidence            4467787333221  123455556666664555555554432211234777888887766 422            2333


Q ss_pred             hhHHHHHHHHhccchhhHHHHhhhCCCCCCcceEEEecCCccH----HHHHHHHHCC----CCCeeeeccc-hHHHhcCC
Q 037818          103 EMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGD----CLRMILQKHR----FICEGINFDL-PEVVGEAP  173 (199)
Q Consensus       103 ~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~----~~~~l~~~~P----~l~~~~v~Dl-p~v~~~a~  173 (199)
                      +.-+.+.+.+           ...    .+.-+|...||++|.    +++.+.+..+    +++ .+.-|+ +.+++.|+
T Consensus       101 ~~f~~L~~~~-----------~~~----~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~-I~atDIs~~aL~~Ar  164 (287)
T PRK10611        101 HHFPILAEHA-----------RRR----SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWK-VFASDIDTEVLEKAR  164 (287)
T ss_pred             HHHHHHHHHH-----------Hhc----CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcE-EEEEECCHHHHHHHH
Confidence            3322232211           111    123589999999998    4444555443    355 777886 44554443


Q ss_pred             C-------------------------------------CCCceEEeCCCCC-CCC--cc-cEEEecC
Q 037818          174 S-------------------------------------ILGVTHIGGDTFK-SIP--AA-DAIFMKW  199 (199)
Q Consensus       174 ~-------------------------------------~~ri~~~~gd~f~-~~P--~a-D~~~l~~  199 (199)
                      +                                     ..+|+|..+|+++ ++|  .. |+|+.+|
T Consensus       165 ~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRN  231 (287)
T PRK10611        165 SGIYRQEELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRN  231 (287)
T ss_pred             hCCCCHHHHhcCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhh
Confidence            1                                     0578999999998 455  23 9998764

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=94.88  E-value=0.046  Score=44.59  Aligned_cols=41  Identities=22%  Similarity=0.255  Sum_probs=33.0

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCC
Q 037818          133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAP  173 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~  173 (199)
                      .++|||+|+|.|..+-++.+.+|++...+.+|. +..++.++
T Consensus        34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~   75 (274)
T PF09243_consen   34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAK   75 (274)
T ss_pred             CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHH
Confidence            479999999999999999999997776788886 44444443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=94.84  E-value=0.047  Score=41.66  Aligned_cols=75  Identities=21%  Similarity=0.152  Sum_probs=49.9

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCC--------eeeeccc-hHHHhcCCCC-------CCceEEeCCC
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFIC--------EGINFDL-PEVVGEAPSI-------LGVTHIGGDT  185 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~--------~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~  185 (199)
                      .++..-. |.....|+|-=||+|+++++.+...++..        +.+..|. +..++.++++       ..|.+..+|+
T Consensus        19 ~ll~la~-~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~   97 (179)
T PF01170_consen   19 ALLNLAG-WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDA   97 (179)
T ss_dssp             HHHHHTT---TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--G
T ss_pred             HHHHHhC-CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecch
Confidence            4455555 77778999999999999998877666655        2678886 6777776653       5689999999


Q ss_pred             CC-CCCc--ccEEEe
Q 037818          186 FK-SIPA--ADAIFM  197 (199)
Q Consensus       186 f~-~~P~--aD~~~l  197 (199)
                      ++ +++.  .|+++.
T Consensus        98 ~~l~~~~~~~d~Ivt  112 (179)
T PF01170_consen   98 RELPLPDGSVDAIVT  112 (179)
T ss_dssp             GGGGGTTSBSCEEEE
T ss_pred             hhcccccCCCCEEEE
Confidence            97 5444  388764

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=94.77  E-value=0.02  Score=46.04  Aligned_cols=67  Identities=15%  Similarity=0.095  Sum_probs=51.9

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCC-------CCCceEEeCCCCCCCC---------c
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPS-------ILGVTHIGGDTFKSIP---------A  191 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~-------~~ri~~~~gd~f~~~P---------~  191 (199)
                      ..+.+++|+||.+.|.-+..+++..| +-+ .+-+|. |+..+.|++       .++|+++.||..+-+|         .
T Consensus        77 ~~~ak~iLEiGT~~GySal~la~al~~~g~-v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~  155 (247)
T PLN02589         77 LINAKNTMEIGVYTGYSLLATALALPEDGK-ILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHG  155 (247)
T ss_pred             HhCCCEEEEEeChhhHHHHHHHhhCCCCCE-EEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCC
Confidence            45678999999999999999999875 566 888887 566666664       2899999999876322         2


Q ss_pred             -ccEEEe
Q 037818          192 -ADAIFM  197 (199)
Q Consensus       192 -aD~~~l  197 (199)
                       -|++++
T Consensus       156 ~fD~iFi  162 (247)
T PLN02589        156 TFDFIFV  162 (247)
T ss_pred             cccEEEe
Confidence             388876

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=94.69  E-value=0.11  Score=40.45  Aligned_cols=69  Identities=19%  Similarity=0.193  Sum_probs=51.0

Q ss_pred             ccchhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCC-CCeeeeccchHHHhcCCCCCCceEEeCCCCC
Q 037818          114 GVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRF-ICEGINFDLPEVVGEAPSILGVTHIGGDTFK  187 (199)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~~v~Dlp~v~~~a~~~~ri~~~~gd~f~  187 (199)
                      +.+......+.+.|..+.+...|+|+|...|.++.-+.+.-.. .+ .+.+|+-+.-.    .+.|.++.+||++
T Consensus        27 SRAa~KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~-ivavDi~p~~~----~~~V~~iq~d~~~   96 (205)
T COG0293          27 SRAAYKLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGK-IVAVDILPMKP----IPGVIFLQGDITD   96 (205)
T ss_pred             chHHHHHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCc-EEEEECccccc----CCCceEEeeeccC
Confidence            3344444567777776788899999999999999977775554 55 88888754432    3558999999985

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=94.68  E-value=0.015  Score=45.14  Aligned_cols=31  Identities=16%  Similarity=0.234  Sum_probs=28.7

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCCeeeeccc
Q 037818          134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL  165 (199)
Q Consensus       134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl  165 (199)
                      .-++|||||.|.+++.|...||+.- .+.+++
T Consensus        62 vefaDIGCGyGGLlv~Lsp~fPdtL-iLGmEI   92 (249)
T KOG3115|consen   62 VEFADIGCGYGGLLMKLAPKFPDTL-ILGMEI   92 (249)
T ss_pred             ceEEeeccCccchhhhccccCccce-eeeehh
Confidence            5789999999999999999999999 888886

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=94.54  E-value=0.043  Score=41.60  Aligned_cols=56  Identities=14%  Similarity=-0.120  Sum_probs=37.5

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCC---------CCCceEEeCCCCC
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPS---------ILGVTHIGGDTFK  187 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~---------~~ri~~~~gd~f~  187 (199)
                      .+.++||++|+|+|..++.+++.++..+ +++=|.|++++..+.         ..++++...|.-+
T Consensus        44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~-Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~  108 (173)
T PF10294_consen   44 FRGKRVLELGAGTGLPGIAAAKLFGAAR-VVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGD  108 (173)
T ss_dssp             TTTSEEEETT-TTSHHHHHHHHT-T-SE-EEEEE-S-HHHHHHHHHHTT--------EEEE--TTS
T ss_pred             cCCceEEEECCccchhHHHHHhccCCce-EEEeccchhhHHHHHHHHhccccccccccCcEEEecC
Confidence            4458999999999999999999987778 999999988776543         1678888888755

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=94.31  E-value=0.045  Score=46.83  Aligned_cols=63  Identities=11%  Similarity=-0.031  Sum_probs=48.7

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCC---CcccEEEe
Q 037818          134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSI---PAADAIFM  197 (199)
Q Consensus       134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~---P~aD~~~l  197 (199)
                      .+|+|++||+|.++..+++..+..+ ++..|. |..++.++++      +.+++..+|..+-+   +..|++++
T Consensus        59 ~~vLDl~aGsG~~~l~~a~~~~~~~-V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~l  131 (382)
T PRK04338         59 ESVLDALSASGIRGIRYALETGVEK-VTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDI  131 (382)
T ss_pred             CEEEECCCcccHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEE
Confidence            5899999999999999999888667 999997 7778777653      45668888875422   22488876

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=94.27  E-value=0.078  Score=43.98  Aligned_cols=66  Identities=26%  Similarity=0.177  Sum_probs=48.9

Q ss_pred             HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC
Q 037818          120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK  187 (199)
Q Consensus       120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~  187 (199)
                      ...+++.+. -.....+||.==|.|.++.++++++|+.+ .+.+|. |.+++.+++.     +|++++.++|-+
T Consensus         9 l~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~-li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~   80 (310)
T PF01795_consen    9 LKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGR-LIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN   80 (310)
T ss_dssp             HHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-E-EEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred             HHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCe-EEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence            345666665 56667999999999999999999999988 999997 7888777642     899999999864

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=94.21  E-value=1.6  Score=35.52  Aligned_cols=135  Identities=16%  Similarity=0.145  Sum_probs=81.1

Q ss_pred             HHHHHHHHhhCCCCChHHHHHHhcChhhHhhhhhHHHHhhCCCCChhhhhhCCCcccccccCchhHHHHHHHHhccchhh
Q 037818           40 LQRILRLLTSYGGLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPF  119 (199)
Q Consensus        40 l~rlL~~l~~~g~~~~~~~~~~~~~~~~~~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~~~~~~~  119 (199)
                      .+|+-+.+...|-.++..++..+...  ..-|..+-+++-.+. +.|            -++|+.-..+.       ...
T Consensus        28 ~~Rl~~~~~~~~~~~~~~y~~~l~~~--~~e~~~~l~~ltin~-T~F------------FR~~~~f~~l~-------~~v   85 (268)
T COG1352          28 YRRLSRRLRKLGLKNFEEYLNLLESD--SEELQAFLDALTINV-TEF------------FRDPEHFEELR-------DEV   85 (268)
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHhCC--HHHHHHHHHHhhhcc-chh------------ccCcHHHHHHH-------HHH
Confidence            45666666666655566655544333  344666666665544 322            12333333332       112


Q ss_pred             HHHHhhhCCCCCCcceEEEecCCccH----HHHHHHHHCCC-----CCeeeeccc-hHHHhcCCCC--------------
Q 037818          120 ITSVLDGYNGFKGVKQLVDVGGSAGD----CLRMILQKHRF-----ICEGINFDL-PEVVGEAPSI--------------  175 (199)
Q Consensus       120 ~~~~~~~~~~~~~~~~vvDvGGG~G~----~~~~l~~~~P~-----l~~~~v~Dl-p~v~~~a~~~--------------  175 (199)
                      .|.++..-.  .+.-+|.-.||++|.    +++.+.+..|.     ++ .+.-|+ ..+++.|+.-              
T Consensus        86 ~p~l~~~~~--~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~-I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~  162 (268)
T COG1352          86 LPELVKRKK--GRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVK-ILATDIDLSVLEKARAGIYPSRELLRGLPPE  162 (268)
T ss_pred             HHHHHhhcc--CCceEEEecCcCCCccHHHHHHHHHHHhccccCCceE-EEEEECCHHHHHHHhcCCCChhHhhccCCHH
Confidence            233433322  146789999999998    77788888874     55 677776 4556555420              


Q ss_pred             ---------------------CCceEEeCCCCCC--CCcc-cEEEecC
Q 037818          176 ---------------------LGVTHIGGDTFKS--IPAA-DAIFMKW  199 (199)
Q Consensus       176 ---------------------~ri~~~~gd~f~~--~P~a-D~~~l~~  199 (199)
                                           ..|+|..+|++++  .+.. |+|+.+|
T Consensus       163 ~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRN  210 (268)
T COG1352         163 LLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRN  210 (268)
T ss_pred             HHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcc
Confidence                                 4699999999974  3443 9999876

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=94.06  E-value=0.045  Score=42.57  Aligned_cols=68  Identities=21%  Similarity=0.204  Sum_probs=48.3

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-------CCCceEEeCCCCCCCCc--ccEEEec
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-------ILGVTHIGGDTFKSIPA--ADAIFMK  198 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-------~~ri~~~~gd~f~~~P~--aD~~~l~  198 (199)
                      ......|+|.-||.|.|+..+++..+..+ ++..|+ |..++..++       .++|+...+|..+-.+.  +|-++|.
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~-V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~  176 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKR-VYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMN  176 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT-SSE-EEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE-
T ss_pred             CCcceEEEEccCCccHHHHHHhhhcCccE-EEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEEC
Confidence            34568999999999999999999888888 999998 677665554       27899999998874433  5888875

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=93.94  E-value=0.081  Score=41.20  Aligned_cols=35  Identities=9%  Similarity=0.091  Sum_probs=27.7

Q ss_pred             CCCcc-eEEEecCCccHHHHHHHHHCCCCCeeeeccc
Q 037818          130 FKGVK-QLVDVGGSAGDCLRMILQKHRFICEGINFDL  165 (199)
Q Consensus       130 ~~~~~-~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl  165 (199)
                      +.... +||+||.|+|..+..+++++|+++ --==|.
T Consensus        22 l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~-WqPSD~   57 (204)
T PF06080_consen   22 LPDSGTRVLEIASGTGQHAVYFAQALPHLT-WQPSDP   57 (204)
T ss_pred             hCccCceEEEEcCCccHHHHHHHHHCCCCE-EcCCCC
Confidence            34444 599999999999999999999998 433343

The function of this family is unknown.

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=93.90  E-value=0.19  Score=39.03  Aligned_cols=67  Identities=18%  Similarity=0.159  Sum_probs=38.9

Q ss_pred             CcceEEEecCCccH--HHH--HHHHHC---C--CCCeeeeccc-hHHHhcCCCC--------------------------
Q 037818          132 GVKQLVDVGGSAGD--CLR--MILQKH---R--FICEGINFDL-PEVVGEAPSI--------------------------  175 (199)
Q Consensus       132 ~~~~vvDvGGG~G~--~~~--~l~~~~---P--~l~~~~v~Dl-p~v~~~a~~~--------------------------  175 (199)
                      +.-+|...||++|.  |+.  .+.+..   .  +++ .+.-|+ +.+++.|++-                          
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~-I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~  109 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFR-ILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGG  109 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEE-EEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCC
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceE-EEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCc
Confidence            55799999999998  444  444422   2  344 566776 5666666520                          


Q ss_pred             --------CCceEEeCCCCC-CCCc-c-cEEEecC
Q 037818          176 --------LGVTHIGGDTFK-SIPA-A-DAIFMKW  199 (199)
Q Consensus       176 --------~ri~~~~gd~f~-~~P~-a-D~~~l~~  199 (199)
                              .+|+|..+|+++ +.|. . |+|+.+|
T Consensus       110 ~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRN  144 (196)
T PF01739_consen  110 YRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRN  144 (196)
T ss_dssp             TTE-HHHHTTEEEEE--TT-S------EEEEEE-S
T ss_pred             eeEChHHcCceEEEecccCCCCcccCCccEEEecC
Confidence                    689999999999 3333 3 9999876

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities

Probab=93.88  E-value=0.025  Score=33.18  Aligned_cols=40  Identities=18%  Similarity=0.175  Sum_probs=32.0

Q ss_pred             ccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            8 EGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         8 ~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      ++.|...|.++|.++.|||+.+|+  ++.  .+.+=|+.|...|
T Consensus         4 R~~Il~~L~~~~~~~~el~~~l~~--s~~--~vs~hL~~L~~~g   43 (47)
T PF01022_consen    4 RLRILKLLSEGPLTVSELAEELGL--SQS--TVSHHLKKLREAG   43 (47)
T ss_dssp             HHHHHHHHTTSSEEHHHHHHHHTS---HH--HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCCchhhHHHhccc--cch--HHHHHHHHHHHCc
Confidence            345667788899999999999999  655  7888888887665

One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=93.77  E-value=0.15  Score=42.26  Aligned_cols=65  Identities=22%  Similarity=0.155  Sum_probs=53.0

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK  187 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~  187 (199)
                      ..+++.+. -.....+||.=.|.|..+.+++++.|+.+ .+.+|. |..++.+++.     +|++++-++|-+
T Consensus        10 ~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~-vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~   80 (305)
T TIGR00006        10 DEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGR-LIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN   80 (305)
T ss_pred             HHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCE-EEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence            45666665 45557999999999999999999998888 999997 7777777642     699999999874

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=93.59  E-value=0.093  Score=41.84  Aligned_cols=53  Identities=15%  Similarity=0.172  Sum_probs=43.6

Q ss_pred             ceEEEecCCccHHHHHHHHHCCC--CCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC
Q 037818          134 KQLVDVGGSAGDCLRMILQKHRF--ICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK  187 (199)
Q Consensus       134 ~~vvDvGGG~G~~~~~l~~~~P~--l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~  187 (199)
                      .+|+.||||.|-..--+++.+|+  ++ ..-+|. |..++..+++     .|+.....|+-.
T Consensus        73 ~~ilEvGCGvGNtvfPll~~~~n~~l~-v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~  133 (264)
T KOG2361|consen   73 ETILEVGCGVGNTVFPLLKTSPNNRLK-VYACDFSPRAIELVKKSSGYDESRVEAFVWDLTS  133 (264)
T ss_pred             hhheeeccCCCcccchhhhcCCCCCeE-EEEcCCChHHHHHHHhccccchhhhcccceeccc
Confidence            38999999999999999999999  88 899996 7777777654     567666777764

>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases

Probab=93.59  E-value=0.053  Score=34.53  Aligned_cols=43  Identities=21%  Similarity=0.142  Sum_probs=34.3

Q ss_pred             chhccccccccCC-CC--CCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            5 ECREGGKKVRLAN-TP--LSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         5 ~A~~lglf~~L~~-g~--~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      ...+-.|...|.+ |+  +|+.|||+.+|+  +..  .+.|+|..|...|
T Consensus         5 ~~~~~~IL~~L~~~g~~~~ta~eLa~~lgl--~~~--~v~r~L~~L~~~G   50 (68)
T smart00550        5 DSLEEKILEFLENSGDETSTALQLAKNLGL--PKK--EVNRVLYSLEKKG   50 (68)
T ss_pred             hHHHHHHHHHHHHCCCCCcCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence            3445566777764 55  999999999999  665  8999999998887

Helix-turn-helix-containing domain. Also known as Zab.

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=93.41  E-value=0.081  Score=42.16  Aligned_cols=44  Identities=23%  Similarity=0.206  Sum_probs=33.7

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCCCC
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSILG  177 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~~r  177 (199)
                      ++.+.++|||||+|.-++.+++.|.+   +|..|. +..++.+++.++
T Consensus        32 ~~h~~a~DvG~G~Gqa~~~iae~~k~---VIatD~s~~mL~~a~k~~~   76 (261)
T KOG3010|consen   32 EGHRLAWDVGTGNGQAARGIAEHYKE---VIATDVSEAMLKVAKKHPP   76 (261)
T ss_pred             CCcceEEEeccCCCcchHHHHHhhhh---heeecCCHHHHHHhhcCCC
Confidence            34569999999999888888887665   556786 677888887543

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=93.04  E-value=0.14  Score=39.14  Aligned_cols=65  Identities=11%  Similarity=0.196  Sum_probs=47.1

Q ss_pred             cceEEEecCCccHHHHHHHHH-CCCCCeeeeccc-hHHHhcCCC----C-CCceEEeCCCCCCCC-c-ccEEEec
Q 037818          133 VKQLVDVGGSAGDCLRMILQK-HRFICEGINFDL-PEVVGEAPS----I-LGVTHIGGDTFKSIP-A-ADAIFMK  198 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~-~P~l~~~~v~Dl-p~v~~~a~~----~-~ri~~~~gd~f~~~P-~-aD~~~l~  198 (199)
                      .+.+++||||+|.....+.+. -|+.. ..--|+ |+.++...+    + .++..+..|++..+- . .|+.+++
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~-~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfN  117 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQAL-YLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFN  117 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCce-EEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEEC
Confidence            689999999999988777664 36666 677787 666665443    2 567888899997532 3 3888765

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=92.86  E-value=0.34  Score=38.95  Aligned_cols=89  Identities=13%  Similarity=0.165  Sum_probs=55.9

Q ss_pred             HHHHHHhccchhh----HHHHhhhCCCCCCcceEEEecCCccHHHHHHHH-HCCCCCeeeeccc-hHHHhcCCCC-----
Q 037818          107 LMRKAMSGVSVPF----ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQ-KHRFICEGINFDL-PEVVGEAPSI-----  175 (199)
Q Consensus       107 ~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~-~~P~l~~~~v~Dl-p~v~~~a~~~-----  175 (199)
                      .|...|...++..    +..|+...+ .....+||+.|.|+|.++..|++ -.|+=+ ..-+|. ++-.+.|+++     
T Consensus        12 ~~~~~l~rrtQIiYpkD~~~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~-v~t~E~~~~~~~~A~~n~~~~g   89 (247)
T PF08704_consen   12 LWTLSLPRRTQIIYPKDISYILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGH-VYTYEFREDRAEKARKNFERHG   89 (247)
T ss_dssp             HHHHTS-SSS----HHHHHHHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSE-EEEEESSHHHHHHHHHHHHHTT
T ss_pred             HHHHhccCCcceeeCchHHHHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeE-EEccccCHHHHHHHHHHHHHcC
Confidence            4556665555543    335666677 77779999999999999999997 457777 888886 5555555542     


Q ss_pred             --CCceEEeCCCCC-CCCc-----ccEEEe
Q 037818          176 --LGVTHIGGDTFK-SIPA-----ADAIFM  197 (199)
Q Consensus       176 --~ri~~~~gd~f~-~~P~-----aD~~~l  197 (199)
                        ++|++..+|+.+ .++.     +|.++|
T Consensus        90 l~~~v~~~~~Dv~~~g~~~~~~~~~DavfL  119 (247)
T PF08704_consen   90 LDDNVTVHHRDVCEEGFDEELESDFDAVFL  119 (247)
T ss_dssp             CCTTEEEEES-GGCG--STT-TTSEEEEEE
T ss_pred             CCCCceeEecceecccccccccCcccEEEE
Confidence              689999999974 3432     498886

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=92.71  E-value=0.41  Score=38.79  Aligned_cols=86  Identities=14%  Similarity=0.089  Sum_probs=50.8

Q ss_pred             ccccCchhHHHH----HHHHhccchhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcC
Q 037818           97 YYGKMPEMNGLM----RKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEA  172 (199)
Q Consensus        97 ~~~~~~~~~~~f----~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a  172 (199)
                      .+.++|+.-..|    +.....|-....+.+++.+..-++...|-|+|||.+.++.     --..+ +.-|||-.+-+  
T Consensus       141 lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~-----~~~~k-V~SfDL~a~~~--  212 (325)
T KOG3045|consen  141 LFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS-----SERHK-VHSFDLVAVNE--  212 (325)
T ss_pred             HHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhh-----ccccc-eeeeeeecCCC--
Confidence            344555544444    4444455555566677766422456789999999999887     22223 55677744322  


Q ss_pred             CCCCCceEEeCCCCC-CCCc--ccEEE
Q 037818          173 PSILGVTHIGGDTFK-SIPA--ADAIF  196 (199)
Q Consensus       173 ~~~~ri~~~~gd~f~-~~P~--aD~~~  196 (199)
                            ..+++||-+ |++.  .|+.+
T Consensus       213 ------~V~~cDm~~vPl~d~svDvaV  233 (325)
T KOG3045|consen  213 ------RVIACDMRNVPLEDESVDVAV  233 (325)
T ss_pred             ------ceeeccccCCcCccCcccEEE
Confidence                  334678876 5554  36654

>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif

Probab=92.70  E-value=0.026  Score=35.98  Aligned_cols=37  Identities=14%  Similarity=0.148  Sum_probs=29.1

Q ss_pred             cccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           11 KKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        11 lf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      |.+.|. .+..|..|||.++++  +++  .++.+|+.|+..|
T Consensus         5 i~~~l~~~~~~S~~eLa~~~~~--s~~--~ve~mL~~l~~kG   42 (69)
T PF09012_consen    5 IRDYLRERGRVSLAELAREFGI--SPE--AVEAMLEQLIRKG   42 (69)
T ss_dssp             HHHHHHHS-SEEHHHHHHHTT----HH--HHHHHHHHHHCCT
T ss_pred             HHHHHHHcCCcCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            345554 478999999999999  777  9999999999999

FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=92.62  E-value=0.14  Score=35.70  Aligned_cols=39  Identities=21%  Similarity=0.198  Sum_probs=26.3

Q ss_pred             HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc
Q 037818          123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL  165 (199)
Q Consensus       123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl  165 (199)
                      |-..+. -.....+||||||.|.+.--|.+  ...+ |..+|.
T Consensus        50 W~~~~~-~~~~~~FVDlGCGNGLLV~IL~~--EGy~-G~GiD~   88 (112)
T PF07757_consen   50 WRDMYG-EQKFQGFVDLGCGNGLLVYILNS--EGYP-GWGIDA   88 (112)
T ss_pred             HhcccC-CCCCCceEEccCCchHHHHHHHh--CCCC-cccccc
Confidence            444443 34567999999999998776654  3445 666774

; GO: 0008168 methyltransferase activity

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=92.54  E-value=0.24  Score=37.48  Aligned_cols=69  Identities=19%  Similarity=0.249  Sum_probs=50.0

Q ss_pred             hhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHH-CCCCCeeeeccc-hHHHhcCCC-CCCceEEeCCCCC
Q 037818          117 VPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQK-HRFICEGINFDL-PEVVGEAPS-ILGVTHIGGDTFK  187 (199)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~-~P~l~~~~v~Dl-p~v~~~a~~-~~ri~~~~gd~f~  187 (199)
                      .+.++.+.+..+ |.+..-|+++|-|+|.+.++++++ .+.-. .+.++- |+-+....+ .+.++++.||-|+
T Consensus        34 s~lA~~M~s~I~-pesglpVlElGPGTGV~TkaIL~~gv~~~~-L~~iE~~~dF~~~L~~~~p~~~ii~gda~~  105 (194)
T COG3963          34 SILARKMASVID-PESGLPVLELGPGTGVITKAILSRGVRPES-LTAIEYSPDFVCHLNQLYPGVNIINGDAFD  105 (194)
T ss_pred             HHHHHHHHhccC-cccCCeeEEEcCCccHhHHHHHhcCCCccc-eEEEEeCHHHHHHHHHhCCCccccccchhh
Confidence            344567778888 999899999999999999999984 34444 444443 454444433 4788888888884

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=92.49  E-value=0.24  Score=38.79  Aligned_cols=67  Identities=21%  Similarity=0.173  Sum_probs=46.0

Q ss_pred             CCCcceEEEecCCccHHHHHHHH--HCCCCCeeeeccc-hHHHhcCCCC----------------CCceEEeCCCCCCCC
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQ--KHRFICEGINFDL-PEVVGEAPSI----------------LGVTHIGGDTFKSIP  190 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~--~~P~l~~~~v~Dl-p~v~~~a~~~----------------~ri~~~~gd~f~~~P  190 (199)
                      +....+.||||+|+|.+...+..  .-|... .+.+|+ |++++.++++                .++.++.||-..-.+
T Consensus        80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~-~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~  158 (237)
T KOG1661|consen   80 LQPGASFLDVGSGSGYLTACFARMVGATGGN-VHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYA  158 (237)
T ss_pred             hccCcceeecCCCccHHHHHHHHHhcCCCcc-ccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCC
Confidence            44557899999999998776664  334443 356775 8888777642                578899999887444


Q ss_pred             c-c--cEEEe
Q 037818          191 A-A--DAIFM  197 (199)
Q Consensus       191 ~-a--D~~~l  197 (199)
                      + +  |.|..
T Consensus       159 e~a~YDaIhv  168 (237)
T KOG1661|consen  159 EQAPYDAIHV  168 (237)
T ss_pred             ccCCcceEEE
Confidence            4 3  66653

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=92.35  E-value=0.19  Score=39.55  Aligned_cols=63  Identities=11%  Similarity=0.193  Sum_probs=48.3

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-h----HHHhcCCC---CCCceEEeCCCCCCC-Cc--ccEEEe
Q 037818          134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-P----EVVGEAPS---ILGVTHIGGDTFKSI-PA--ADAIFM  197 (199)
Q Consensus       134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p----~v~~~a~~---~~ri~~~~gd~f~~~-P~--aD~~~l  197 (199)
                      ..+.||||-|+.+...+++.+|..+ ++.-|. |    .++...+.   .+||+.-.||-|.++ +.  .|++++
T Consensus        18 ~~iaDIGsDHAYLp~~Lv~~~~~~~-~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivI   91 (226)
T COG2384          18 ARIADIGSDHAYLPIYLVKNNPAST-AVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVI   91 (226)
T ss_pred             CceeeccCchhHhHHHHHhcCCcce-EEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEE
Confidence            4499999999999999999999999 998886 3    33333333   389999999998763 33  266654

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=91.65  E-value=0.25  Score=38.04  Aligned_cols=45  Identities=18%  Similarity=0.255  Sum_probs=35.0

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccchH
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDLPE  167 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dlp~  167 (199)
                      .+-+.|..+....+|+|+|+..|.++.-..++. |+-. +..+|+-.
T Consensus        59 EindKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~-v~gVDllh  104 (232)
T KOG4589|consen   59 EINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGM-VLGVDLLH  104 (232)
T ss_pred             eehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCce-EEEEeeee
Confidence            344566645667899999999999999666655 9998 99999843

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=91.64  E-value=0.24  Score=39.04  Aligned_cols=68  Identities=15%  Similarity=0.158  Sum_probs=53.1

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC-------CCceEEe-CCCCC---C-CCc-ccE
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI-------LGVTHIG-GDTFK---S-IPA-ADA  194 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~-gd~f~---~-~P~-aD~  194 (199)
                      .++.+++|+||.+.|.-+..++..-| +-+ .|-+|. |+-.+.|+++       +||+... ||-.+   . ... -|+
T Consensus        57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~-l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDl  135 (219)
T COG4122          57 LSGPKRILEIGTAIGYSALWMALALPDDGR-LTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDL  135 (219)
T ss_pred             hcCCceEEEeecccCHHHHHHHhhCCCCCe-EEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccE
Confidence            56789999999999999999999999 777 888897 6667777753       7788888 57664   2 122 388


Q ss_pred             EEec
Q 037818          195 IFMK  198 (199)
Q Consensus       195 ~~l~  198 (199)
                      +|+-
T Consensus       136 iFID  139 (219)
T COG4122         136 VFID  139 (219)
T ss_pred             EEEe
Confidence            8873

>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation

Probab=91.24  E-value=0.14  Score=34.03  Aligned_cols=39  Identities=21%  Similarity=0.219  Sum_probs=33.1

Q ss_pred             cccccccCC--CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            9 GGKKVRLAN--TPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         9 lglf~~L~~--g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      +.|.+.|.+  ++.|+.|||+.+|+  +..  .+.|.|..|...|
T Consensus         8 ~~Il~~l~~~~~~~t~~~ia~~l~i--~~~--tv~r~l~~L~~~g   48 (91)
T smart00346        8 LAVLRALAEEPGGLTLAELAERLGL--SKS--TAHRLLNTLQELG   48 (91)
T ss_pred             HHHHHHHHhCCCCcCHHHHHHHhCC--CHH--HHHHHHHHHHHCC
Confidence            456777764  68999999999999  665  8999999999988

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=91.07  E-value=0.55  Score=38.77  Aligned_cols=66  Identities=24%  Similarity=0.156  Sum_probs=55.1

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK  187 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~  187 (199)
                      ..+++.+. .......||.==|-|.++.++++++|++.+.+.+|. |..++.|++.     +|++++-++|-+
T Consensus        13 ~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~   84 (314)
T COG0275          13 NEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN   84 (314)
T ss_pred             HHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence            45566665 555589999999999999999999998887899997 7889888763     799999998764

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=90.61  E-value=0.11  Score=43.67  Aligned_cols=67  Identities=19%  Similarity=0.227  Sum_probs=43.8

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchH----HHhcCCCC---CCceEEeCCCCC---CCCcccEEEe
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPE----VVGEAPSI---LGVTHIGGDTFK---SIPAADAIFM  197 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~----v~~~a~~~---~ri~~~~gd~f~---~~P~aD~~~l  197 (199)
                      |+- ++|||||-|.|.-+.++-.-+|+++.+++++...    |++...++   .+..--+.|+-.   ++|.+|.|.+
T Consensus       112 fap-qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl  188 (484)
T COG5459         112 FAP-QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTL  188 (484)
T ss_pred             cCc-chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeeh
Confidence            443 6799999999999999999999999667777532    22222221   222222344442   5777787765

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=90.25  E-value=0.72  Score=35.79  Aligned_cols=67  Identities=16%  Similarity=0.129  Sum_probs=44.7

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCCCCCcccEEEec
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFKSIPAADAIFMK  198 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~~~P~aD~~~l~  198 (199)
                      +-..++|+|.|-|+|..+++.+++--.-  .+--|. |..+..++-+     -.|.+...|.-.+-|..|+++..
T Consensus        77 tVrgkrVLd~gagsgLvaIAaa~aGA~~--v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~Lag  149 (218)
T COG3897          77 TVRGKRVLDLGAGSGLVAIAAARAGAAE--VVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAG  149 (218)
T ss_pred             ccccceeeecccccChHHHHHHHhhhHH--HHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEee
Confidence            6667999999999999998887754332  333333 5555444433     46788888887743445887754

>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B

Probab=89.89  E-value=0.12  Score=31.97  Aligned_cols=41  Identities=17%  Similarity=0.160  Sum_probs=32.0

Q ss_pred             hcccccccc-CCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            7 REGGKKVRL-ANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         7 ~~lglf~~L-~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      .++.|...| .++|.|+.+||+.+|+  ++.  .+.+=|+.|...|
T Consensus        11 ~R~~Il~~L~~~~~~t~~ela~~l~~--~~~--t~s~hL~~L~~aG   52 (61)
T PF12840_consen   11 TRLRILRLLASNGPMTVSELAEELGI--SQS--TVSYHLKKLEEAG   52 (61)
T ss_dssp             HHHHHHHHHHHCSTBEHHHHHHHHTS---HH--HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence            456678888 6799999999999999  655  6777788777655

...

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=89.89  E-value=0.63  Score=35.97  Aligned_cols=60  Identities=17%  Similarity=0.174  Sum_probs=46.3

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC-CCCcccEEE
Q 037818          134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK-SIPAADAIF  196 (199)
Q Consensus       134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~-~~P~aD~~~  196 (199)
                      ..+-|+|.|+|.++.-.+++  .=+ ++.+++ |...+-+.++      .+++.+.||-.+ .+-.||+++
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~--A~r-ViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvi  101 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHA--AER-VIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVI  101 (252)
T ss_pred             hceeeccCCcchHHHHHHhh--hce-EEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeH
Confidence            47899999999998877766  334 777776 6666677664      789999999987 575578875

>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A

Probab=89.87  E-value=0.13  Score=30.10  Aligned_cols=39  Identities=13%  Similarity=0.167  Sum_probs=28.6

Q ss_pred             cccccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            9 GGKKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         9 lglf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      ..|+..|.+ +.+|..|||+.+|+  +..  .+.+.++-|...|
T Consensus         6 ~~Il~~l~~~~~~t~~ela~~~~i--s~~--tv~~~l~~L~~~g   45 (48)
T PF13412_consen    6 RKILNYLRENPRITQKELAEKLGI--SRS--TVNRYLKKLEEKG   45 (48)
T ss_dssp             HHHHHHHHHCTTS-HHHHHHHHTS---HH--HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCCHHHHHHHhCC--CHH--HHHHHHHHHHHCc
Confidence            345666654 67999999999999  554  8888888887654

...

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=89.79  E-value=0.42  Score=37.59  Aligned_cols=32  Identities=16%  Similarity=0.057  Sum_probs=29.9

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCCeeeeccc
Q 037818          133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL  165 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl  165 (199)
                      ..+++|||-|.|.=+.-++=.+|+++ .|++|.
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~-vtLles   99 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLK-VTLLES   99 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCc-EEEEcc
Confidence            58999999999998888889999999 999995

>KOG2730 consensus Methylase [General function prediction only]

Probab=89.76  E-value=0.17  Score=39.94  Aligned_cols=53  Identities=19%  Similarity=0.219  Sum_probs=44.6

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK  187 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~  187 (199)
                      +...|+|.-||-|.-.++.+..+|.+=   .+|. |.-+..|+.+       +||+|+.||+++
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~~~Vi---sIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld  154 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQGPYVI---AIDIDPVKIACARHNAEVYGVPDRITFICGDFLD  154 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhCCeEE---EEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence            568999999999999999999999765   4564 7778888764       899999999996

>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis

Probab=89.66  E-value=0.16  Score=32.09  Aligned_cols=38  Identities=24%  Similarity=0.277  Sum_probs=31.2

Q ss_pred             cccccc-CCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           10 GKKVRL-ANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        10 glf~~L-~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      .|...| ..++.|+++||+.+|+  +..  .+.+.|+-|...|
T Consensus        12 ~vy~~Ll~~~~~t~~eIa~~l~i--~~~--~v~~~L~~L~~~G   50 (68)
T PF01978_consen   12 KVYLALLKNGPATAEEIAEELGI--SRS--TVYRALKSLEEKG   50 (68)
T ss_dssp             HHHHHHHHHCHEEHHHHHHHHTS--SHH--HHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            344444 4699999999999999  655  8999999999888

TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.

>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A

Probab=89.46  E-value=0.22  Score=31.11  Aligned_cols=31  Identities=23%  Similarity=0.181  Sum_probs=26.3

Q ss_pred             CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           17 NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        17 ~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      .+|.|..|||+.+|+  +..  .++++|..|...|
T Consensus        13 ~~p~~T~eiA~~~gl--s~~--~aR~yL~~Le~eG   43 (62)
T PF04703_consen   13 NGPLKTREIADALGL--SIY--QARYYLEKLEKEG   43 (62)
T ss_dssp             TS-EEHHHHHHHHTS---HH--HHHHHHHHHHHCT
T ss_pred             CCCCCHHHHHHHhCC--CHH--HHHHHHHHHHHCC
Confidence            489999999999999  665  8999999999888

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=89.31  E-value=0.56  Score=35.97  Aligned_cols=63  Identities=14%  Similarity=0.101  Sum_probs=42.6

Q ss_pred             eEEEecCCccHHHHHHHHHCCCCCeeeeccch-H---HHhcCC---CCCCceEEeCCCCC-CCCc-ccEEEec
Q 037818          135 QLVDVGGSAGDCLRMILQKHRFICEGINFDLP-E---VVGEAP---SILGVTHIGGDTFK-SIPA-ADAIFMK  198 (199)
Q Consensus       135 ~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp-~---v~~~a~---~~~ri~~~~gd~f~-~~P~-aD~~~l~  198 (199)
                      +++|||.|-|.=++-++=.+|+++ ++++|-= .   .++.+.   ..++++.+.+..-+ ..+. .|+++.+
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~-~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aR  122 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQ-VTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTAR  122 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSE-EEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEE
T ss_pred             eEEecCCCCCChhHHHHHhCCCCc-EEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEee
Confidence            799999999999999999999999 9999952 1   122111   13677777777665 2333 3777654

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp

Probab=88.86  E-value=0.31  Score=32.12  Aligned_cols=30  Identities=30%  Similarity=0.445  Sum_probs=26.1

Q ss_pred             CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           18 TPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      ++.|.++||+++++  ++.  .+++++..|...|
T Consensus        24 ~~~s~~eiA~~~~i--~~~--~l~kil~~L~~~G   53 (83)
T PF02082_consen   24 KPVSSKEIAERLGI--SPS--YLRKILQKLKKAG   53 (83)
T ss_dssp             C-BEHHHHHHHHTS---HH--HHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHCc--CHH--HHHHHHHHHhhCC
Confidence            46999999999999  776  9999999999988

(strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.

>COG3355 Predicted transcriptional regulator [Transcription]

Probab=88.83  E-value=0.33  Score=34.82  Aligned_cols=40  Identities=20%  Similarity=0.218  Sum_probs=31.2

Q ss_pred             ccccccc-c-CCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            8 EGGKKVR-L-ANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         8 ~lglf~~-L-~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      +..++-. | .++|.|+++||+.++.  +..  .++|-|+-|...|
T Consensus        29 Dv~v~~~LL~~~~~~tvdelae~lnr--~rS--tv~rsl~~L~~~G   70 (126)
T COG3355          29 DVEVYKALLEENGPLTVDELAEILNR--SRS--TVYRSLQNLLEAG   70 (126)
T ss_pred             HHHHHHHHHhhcCCcCHHHHHHHHCc--cHH--HHHHHHHHHHHcC
Confidence            3344444 4 3799999999999999  554  7889999998888

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=88.82  E-value=0.42  Score=38.81  Aligned_cols=57  Identities=16%  Similarity=0.169  Sum_probs=34.4

Q ss_pred             CCcceEEEecCCccH---HHHHHHHHCCCCCeeeeccc-hHHHhcCCC----CCC--ceEEeCCCCCC
Q 037818          131 KGVKQLVDVGGSAGD---CLRMILQKHRFICEGINFDL-PEVVGEAPS----ILG--VTHIGGDTFKS  188 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~---~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----~~r--i~~~~gd~f~~  188 (199)
                      .+...+||||+|.-+   .-.-..+..|+.+ ++-+|. |-|+..++.    +++  ..++.+|+.++
T Consensus        67 ~GIrQFLDlGsGlPT~~nvHevAq~~~P~aR-VVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p  133 (267)
T PF04672_consen   67 AGIRQFLDLGSGLPTAGNVHEVAQRVAPDAR-VVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDP  133 (267)
T ss_dssp             T---EEEEET--S--SS-HHHHHHHH-TT-E-EEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-H
T ss_pred             cCcceEEEcccCCCCCCCHhHHHHhhCCCce-EEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCH
Confidence            378999999999764   3334456799999 999996 888888875    244  89999999874

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor

Probab=88.79  E-value=0.47  Score=28.68  Aligned_cols=35  Identities=17%  Similarity=0.163  Sum_probs=29.2

Q ss_pred             cccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           13 VRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        13 ~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      ..|..++.|..+|++.+++  ++.  .+.+.|+.|...|
T Consensus         4 ~~l~~~~~~~~~i~~~l~i--s~~--~v~~~l~~L~~~g   38 (66)
T smart00418        4 KLLAEGELCVCELAEILGL--SQS--TVSHHLKKLREAG   38 (66)
T ss_pred             HHhhcCCccHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence            3444688999999999999  655  8899999999887

>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional

Probab=88.15  E-value=0.4  Score=38.60  Aligned_cols=38  Identities=16%  Similarity=0.360  Sum_probs=31.9

Q ss_pred             ccccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           10 GKKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        10 glf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      .|.+.|.+ ++.|+.|||+++|+  +..  .+.|+|+.|+..|
T Consensus        18 ~IL~~l~~~~~l~l~eia~~lgl--~ks--tv~Rll~tL~~~G   56 (257)
T PRK15090         18 GILQALGEEREIGITELSQRVMM--SKS--TVYRFLQTMKTLG   56 (257)
T ss_pred             HHHHHhhcCCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            35555653 67999999999999  665  8999999999999

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=88.01  E-value=0.42  Score=42.01  Aligned_cols=26  Identities=19%  Similarity=0.364  Sum_probs=22.5

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCC
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRF  156 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~  156 (199)
                      .+.+.+||||||.|.|+..+++++=-
T Consensus       116 g~iR~~LDvGcG~aSF~a~l~~r~V~  141 (506)
T PF03141_consen  116 GGIRTALDVGCGVASFGAYLLERNVT  141 (506)
T ss_pred             CceEEEEeccceeehhHHHHhhCCce
Confidence            46789999999999999999987643

; GO: 0008168 methyltransferase activity

>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family

Probab=87.95  E-value=0.38  Score=38.48  Aligned_cols=39  Identities=13%  Similarity=0.066  Sum_probs=32.9

Q ss_pred             cccccccCC--CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            9 GGKKVRLAN--TPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         9 lglf~~L~~--g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      +.|.+.|.+  .+.|+.|||+++|+  +..  .+.|+|..|+..|
T Consensus        12 l~IL~~l~~~~~~~~l~eia~~lgl--pks--T~~RlL~tL~~~G   52 (248)
T TIGR02431        12 LAVIEAFGAERPRLTLTDVAEATGL--TRA--AARRFLLTLVELG   52 (248)
T ss_pred             HHHHHHHhcCCCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            346666753  68999999999999  655  8999999999999

Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.

>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein

Probab=87.74  E-value=0.61  Score=26.73  Aligned_cols=30  Identities=23%  Similarity=0.339  Sum_probs=26.1

Q ss_pred             CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           18 TPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      -+.|..+||+.+++  +..  .+.+.|+.|...|
T Consensus         7 ~~~s~~~la~~l~~--s~~--tv~~~l~~L~~~g   36 (48)
T smart00419        7 LPLTRQEIAELLGL--TRE--TVSRTLKRLEKEG   36 (48)
T ss_pred             eccCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence            36899999999999  665  8999999998877

>COG1414 IclR Transcriptional regulator [Transcription]

Probab=87.67  E-value=0.36  Score=38.73  Aligned_cols=39  Identities=26%  Similarity=0.304  Sum_probs=32.5

Q ss_pred             cccccccCCCC--CCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            9 GGKKVRLANTP--LSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         9 lglf~~L~~g~--~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      +.|.+.|..+|  +++.|||+++|+  +..  .+.|+|..|+..|
T Consensus         7 l~iL~~l~~~~~~l~l~ela~~~gl--pks--T~~RlL~tL~~~G   47 (246)
T COG1414           7 LAILDLLAEGPGGLSLAELAERLGL--PKS--TVHRLLQTLVELG   47 (246)
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHhCc--CHH--HHHHHHHHHHHCC
Confidence            45677777544  569999999999  665  8999999999999

>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif

Probab=87.51  E-value=0.56  Score=28.36  Aligned_cols=26  Identities=8%  Similarity=-0.075  Sum_probs=22.0

Q ss_pred             cchhccccccccCCCCCCHHHHHHHcCC
Q 037818            4 NECREGGKKVRLANTPLSASQILTRILP   31 (199)
Q Consensus         4 ~~A~~lglf~~L~~g~~t~~eLA~~~~~   31 (199)
                      ..|++.|.|+.=.  ..|+.|||+.+|+
T Consensus        10 ~~A~~~GYfd~PR--~~tl~elA~~lgi   35 (53)
T PF04967_consen   10 KAAYELGYFDVPR--RITLEELAEELGI   35 (53)
T ss_pred             HHHHHcCCCCCCC--cCCHHHHHHHhCC
Confidence            3688999998643  5899999999999

This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=87.25  E-value=0.41  Score=38.42  Aligned_cols=65  Identities=14%  Similarity=0.096  Sum_probs=45.3

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccch-HHHhcCCC-----CCCceEEeCCCCCCCCc--ccEEEe
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP-EVVGEAPS-----ILGVTHIGGDTFKSIPA--ADAIFM  197 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp-~v~~~a~~-----~~ri~~~~gd~f~~~P~--aD~~~l  197 (199)
                      ...+|+|||||--=++.-.....|+.+ -+.+|.. ..++....     ..+.+..-.|++...|.  +|+-+|
T Consensus       105 ~p~sVlDigCGlNPlalp~~~~~~~a~-Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLl  177 (251)
T PF07091_consen  105 PPDSVLDIGCGLNPLALPWMPEAPGAT-YIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALL  177 (251)
T ss_dssp             --SEEEEET-TTCHHHHHTTTSSTT-E-EEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEE
T ss_pred             CCchhhhhhccCCceehhhcccCCCcE-EEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhH
Confidence            368999999999999998889999998 8999985 33333332     26778888899987665  587664

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=87.24  E-value=0.74  Score=37.94  Aligned_cols=68  Identities=21%  Similarity=0.213  Sum_probs=45.8

Q ss_pred             CCCcceEEEecCCccHHHHHHHHH-------CCCCCeeeeccc-hHHHhcCCC--------CCCceEEeCCCCC-C-CC-
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQK-------HRFICEGINFDL-PEVVGEAPS--------ILGVTHIGGDTFK-S-IP-  190 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~-------~P~l~~~~v~Dl-p~v~~~a~~--------~~ri~~~~gd~f~-~-~P-  190 (199)
                      -....+|+|-.||+|.++.++.+.       .+..+ ...+|. |..+..++.        ........+|.|. + .. 
T Consensus        44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~-i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~  122 (311)
T PF02384_consen   44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEIN-IYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIK  122 (311)
T ss_dssp             T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEE-EEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTS
T ss_pred             ccccceeechhhhHHHHHHHHHHhhcccccccccce-eEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccc
Confidence            345578999999999999999885       57788 888997 455544432        1335688899985 2 32 


Q ss_pred             -c-ccEEEec
Q 037818          191 -A-ADAIFMK  198 (199)
Q Consensus       191 -~-aD~~~l~  198 (199)
                       . .|+++++
T Consensus       123 ~~~~D~ii~N  132 (311)
T PF02384_consen  123 NQKFDVIIGN  132 (311)
T ss_dssp             T--EEEEEEE
T ss_pred             ccccccccCC
Confidence             2 4888764

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PRK11569 transcriptional repressor IclR; Provisional

Probab=87.12  E-value=0.41  Score=38.95  Aligned_cols=39  Identities=10%  Similarity=0.098  Sum_probs=32.7

Q ss_pred             cccccccCC--CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            9 GGKKVRLAN--TPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         9 lglf~~L~~--g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      +.|.+.|.+  ++.|+.|||+.+|+  +..  -+.|+|..|+..|
T Consensus        31 l~IL~~l~~~~~~~~lseia~~lgl--pks--Tv~RlL~tL~~~G   71 (274)
T PRK11569         31 LKLLEWIAESNGSVALTELAQQAGL--PNS--TTHRLLTTMQQQG   71 (274)
T ss_pred             HHHHHHHHhCCCCcCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            345666654  68999999999999  655  8999999999999

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=86.98  E-value=0.42  Score=40.82  Aligned_cols=64  Identities=13%  Similarity=0.044  Sum_probs=48.0

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCC---c-ccEEEe
Q 037818          134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIP---A-ADAIFM  197 (199)
Q Consensus       134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P---~-aD~~~l  197 (199)
                      -+|||.-+|+|..++..+++-+..+.++..|. |..++.++++      +.+++..+|.+.-+.   . .|++.+
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdl  120 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDI  120 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEe
Confidence            48999999999999999999877765888997 7777777653      346777777775211   2 377765

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PRK10163 DNA-binding transcriptional repressor AllR; Provisional

Probab=86.44  E-value=0.49  Score=38.48  Aligned_cols=39  Identities=18%  Similarity=0.039  Sum_probs=32.7

Q ss_pred             cccccccCC--CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            9 GGKKVRLAN--TPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         9 lglf~~L~~--g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      +.|.+.|.+  ++.|+.|||+++|+  +..  .+.|+|..|+..|
T Consensus        28 l~IL~~~~~~~~~~tl~eIa~~lgl--pkS--tv~RlL~tL~~~G   68 (271)
T PRK10163         28 IAILQYLEKSGGSSSVSDISLNLDL--PLS--TTFRLLKVLQAAD   68 (271)
T ss_pred             HHHHHHHHhCCCCcCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            346666653  57999999999999  655  8999999999999

>PRK15431 ferrous iron transport protein FeoC; Provisional

Probab=86.23  E-value=0.51  Score=30.88  Aligned_cols=37  Identities=24%  Similarity=0.230  Sum_probs=31.8

Q ss_pred             cccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           11 KKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        11 lf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      |=|.|.. |..++.+||..+++  +++  .++-+|..+++.|
T Consensus         7 lRd~l~~~gr~s~~~Ls~~~~~--p~~--~VeaMLe~l~~kG   44 (78)
T PRK15431          7 VRDLLALRGRMEAAQISQTLNT--PQP--MINAMLQQLESMG   44 (78)
T ss_pred             HHHHHHHcCcccHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            3456653 88999999999999  777  9999999999999

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=85.95  E-value=2.1  Score=36.57  Aligned_cols=77  Identities=16%  Similarity=0.071  Sum_probs=55.9

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCC----e----------------------------------eee
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFIC----E----------------------------------GIN  162 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~----~----------------------------------~~v  162 (199)
                      .+++..-. |.....++|-=||+|+++++.+...+++-    +                                  .+.
T Consensus       181 aAil~lag-w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G  259 (381)
T COG0116         181 AAILLLAG-WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYG  259 (381)
T ss_pred             HHHHHHcC-CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEE
Confidence            34554444 87778999999999999999988886422    1                                  346


Q ss_pred             ccc-hHHHhcCCCC-------CCceEEeCCCCC-CCC-c-ccEEEec
Q 037818          163 FDL-PEVVGEAPSI-------LGVTHIGGDTFK-SIP-A-ADAIFMK  198 (199)
Q Consensus       163 ~Dl-p~v~~~a~~~-------~ri~~~~gd~f~-~~P-~-aD~~~l~  198 (199)
                      +|. |.+++.|+.+       +.|+|..+|+-+ +-| . -|+++.+
T Consensus       260 ~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~N  306 (381)
T COG0116         260 SDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISN  306 (381)
T ss_pred             ecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeC
Confidence            776 7778877754       779999999875 333 3 3887754

>TIGR00122 birA_repr_reg BirA biotin operon repressor domain

Probab=85.89  E-value=0.59  Score=29.53  Aligned_cols=39  Identities=15%  Similarity=0.215  Sum_probs=31.7

Q ss_pred             cccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            9 GGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         9 lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      .-++..|.+++.|..+||+.+|+  +..  .+.+-++.|.+.|
T Consensus         3 ~~il~~L~~~~~~~~eLa~~l~v--S~~--tv~~~l~~L~~~g   41 (69)
T TIGR00122         3 LRLLALLADNPFSGEKLGEALGM--SRT--AVNKHIQTLREWG   41 (69)
T ss_pred             HHHHHHHHcCCcCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence            34566788889999999999999  555  7888888887776

This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.

>PF02796 HTH_7: Helix-turn-helix domain of resolvase; InterPro: IPR006120 Site-specific recombination plays an important role in DNA rearrangement in prokaryotic organisms

Probab=85.04  E-value=0.27  Score=28.45  Aligned_cols=30  Identities=20%  Similarity=0.161  Sum_probs=19.0

Q ss_pred             cccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHH
Q 037818           11 KKVRLANTPLSASQILTRILPSGDGDAENLQRILR   45 (199)
Q Consensus        11 lf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~   45 (199)
                      +...+.+| .|+.+||+.+|+  +..  -+.|+|+
T Consensus        14 i~~l~~~G-~si~~IA~~~gv--sr~--TvyR~l~   43 (45)
T PF02796_consen   14 IKELYAEG-MSIAEIAKQFGV--SRS--TVYRYLN   43 (45)
T ss_dssp             HHHHHHTT---HHHHHHHTTS---HH--HHHHHHC
T ss_pred             HHHHHHCC-CCHHHHHHHHCc--CHH--HHHHHHh
Confidence            34445567 999999999999  443  5666653

Two types of site-specific recombination are known to occur: Recombination between inverted repeats resulting in the reversal of a DNA segment. Recombination between repeat sequences on two DNA molecules resulting in their cointegration, or between repeats on one DNA molecule resulting in the excision of a DNA fragment. Site-specific recombination is characterised by a strand exchange mechanism that requires no DNA synthesis or high energy cofactor; the phosphodiester bond energy is conserved in a phospho-protein linkage during strand cleavage and re-ligation. Two unrelated families of recombinases are currently known []. The first, called the 'phage integrase' family, groups a number of bacterial phage and yeast plasmid enzymes. The second [], called the 'resolvase' family, groups enzymes which share the following structural characteristics: an N-terminal catalytic and dimerization domain that contains a conserved serine residue involved in the transient covalent attachment to DNA IPR006119 from INTERPRO, and a C-terminal helix-turn-helix DNA-binding domain. ; GO: 0000150 recombinase activity, 0003677 DNA binding, 0006310 DNA recombination; PDB: 1ZR2_A 2GM4_B 1RES_A 1ZR4_A 1RET_A 1GDT_B 2R0Q_C 1JKP_C 1IJW_C 1JJ6_C ....

>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=85.04  E-value=0.29  Score=34.91  Aligned_cols=44  Identities=16%  Similarity=0.202  Sum_probs=36.2

Q ss_pred             cchhccccccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            4 NECREGGKKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         4 ~~A~~lglf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      +..+..-|.+.+.+ |..|+.|++..+|+  +-.  .+.+.++-|++.|
T Consensus        10 r~eLk~rIvElVRe~GRiTi~ql~~~TGa--sR~--Tvk~~lreLVa~G   54 (127)
T PF06163_consen   10 REELKARIVELVREHGRITIKQLVAKTGA--SRN--TVKRYLRELVARG   54 (127)
T ss_pred             HHHHHHHHHHHHHHcCCccHHHHHHHHCC--CHH--HHHHHHHHHHHcC
Confidence            34455566666764 99999999999999  655  8999999999999

>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family

Probab=84.81  E-value=1.2  Score=27.54  Aligned_cols=32  Identities=22%  Similarity=0.326  Sum_probs=27.8

Q ss_pred             CCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           16 ANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        16 ~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      ..++.|..+||+.+|+  ++.  .+.+.|+.|...|
T Consensus        22 ~~~~~s~~ela~~~g~--s~~--tv~r~l~~L~~~g   53 (67)
T cd00092          22 VQLPLTRQEIADYLGL--TRE--TVSRTLKELEEEG   53 (67)
T ss_pred             ccCCcCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence            3478999999999999  665  8999999998877

>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism

Probab=84.74  E-value=0.54  Score=28.68  Aligned_cols=37  Identities=16%  Similarity=0.097  Sum_probs=30.5

Q ss_pred             cccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           11 KKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        11 lf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      |.+.|. .+..|+++||+.+++  ++.  -++|=|..|...|
T Consensus         5 Il~~l~~~~~~s~~ela~~~~V--S~~--TiRRDl~~L~~~g   42 (57)
T PF08220_consen    5 ILELLKEKGKVSVKELAEEFGV--SEM--TIRRDLNKLEKQG   42 (57)
T ss_pred             HHHHHHHcCCEEHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            345555 488999999999999  776  8899999998877

This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular

>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif

Probab=84.74  E-value=0.7  Score=24.84  Aligned_cols=29  Identities=24%  Similarity=0.410  Sum_probs=21.5

Q ss_pred             CCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           19 PLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        19 ~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      |+|-+|||+.+|+  .++  -+.|+|.-|...|
T Consensus         2 ~mtr~diA~~lG~--t~E--TVSR~l~~l~~~g   30 (32)
T PF00325_consen    2 PMTRQDIADYLGL--TRE--TVSRILKKLERQG   30 (32)
T ss_dssp             E--HHHHHHHHTS---HH--HHHHHHHHHHHTT
T ss_pred             CcCHHHHHHHhCC--cHH--HHHHHHHHHHHcC
Confidence            5788999999999  666  8899988876544

These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=84.38  E-value=0.89  Score=40.13  Aligned_cols=56  Identities=25%  Similarity=0.241  Sum_probs=42.4

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC------CCceEEeC---CCCC
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI------LGVTHIGG---DTFK  187 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~------~ri~~~~g---d~f~  187 (199)
                      ...-+.++|+=||+|.++.++++..-.+- + +-+.|+.++.|+.+      .+++|+.|   |.|.
T Consensus       381 l~~~k~llDv~CGTG~iglala~~~~~Vi-G-vEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~  445 (534)
T KOG2187|consen  381 LPADKTLLDVCCGTGTIGLALARGVKRVI-G-VEISPDAVEDAEKNAQINGISNATFIVGQAEDLFP  445 (534)
T ss_pred             CCCCcEEEEEeecCCceehhhhcccccee-e-eecChhhcchhhhcchhcCccceeeeecchhhccc
Confidence            44458999999999999999988766554 4 23458888888754      78899988   5654

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=84.32  E-value=0.96  Score=38.65  Aligned_cols=76  Identities=17%  Similarity=0.240  Sum_probs=52.2

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHH---HCCCCCeeeeccchHHHhcCCC-------------CCCceEEeCCC
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQ---KHRFICEGINFDLPEVVGEAPS-------------ILGVTHIGGDT  185 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~---~~P~l~~~~v~Dlp~v~~~a~~-------------~~ri~~~~gd~  185 (199)
                      .+.+.+. .......+|+|+|.|.....++.   .-+.+- +-++|-|.-+.....             ...++++.|+|
T Consensus       183 si~dEl~-~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG-~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf  260 (419)
T KOG3924|consen  183 SIVDELK-LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVG-FEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSF  260 (419)
T ss_pred             HHHHHhc-cCCCCcccCCCcccchhhHHHHHhhccccccc-eeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccccc
Confidence            4555655 66678999999999996655544   444444 556666766665442             14588999999


Q ss_pred             CCC------CCcccEEEecC
Q 037818          186 FKS------IPAADAIFMKW  199 (199)
Q Consensus       186 f~~------~P~aD~~~l~~  199 (199)
                      ..+      +++|+++++++
T Consensus       261 ~~~~~v~eI~~eatvi~vNN  280 (419)
T KOG3924|consen  261 LDPKRVTEIQTEATVIFVNN  280 (419)
T ss_pred             CCHHHHHHHhhcceEEEEec
Confidence            964      55688888764

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=84.28  E-value=1.2  Score=35.94  Aligned_cols=29  Identities=17%  Similarity=0.302  Sum_probs=25.7

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeee
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGI  161 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~  161 (199)
                      +..++||||-|.|.....++..|.++. +|
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~-aT  122 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFKEVY-AT  122 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcceEE-ee
Confidence            347999999999999999999999887 54

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>smart00344 HTH_ASNC helix_turn_helix ASNC type

Probab=84.20  E-value=0.6  Score=32.09  Aligned_cols=41  Identities=10%  Similarity=0.127  Sum_probs=33.4

Q ss_pred             hccccccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            7 REGGKKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         7 ~~lglf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      .+..|...|.+ ++.|..+||+.+|+  ++.  .+.+.++.|...|
T Consensus         4 ~D~~il~~L~~~~~~~~~~la~~l~~--s~~--tv~~~l~~L~~~g   45 (108)
T smart00344        4 IDRKILEELQKDARISLAELAKKVGL--SPS--TVHNRVKRLEEEG   45 (108)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            35566677764 78999999999999  776  8899999998877

AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=83.15  E-value=1.1  Score=33.59  Aligned_cols=38  Identities=13%  Similarity=0.087  Sum_probs=32.8

Q ss_pred             ccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           10 GKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        10 glf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      -|+++|. .+.+|-+|||..+|+  +..  .++++|..|...|
T Consensus        18 ~Vl~aL~~~~~~tdEeLa~~Lgi--~~~--~VRk~L~~L~e~~   56 (158)
T TIGR00373        18 LVLFSLGIKGEFTDEEISLELGI--KLN--EVRKALYALYDAG   56 (158)
T ss_pred             HHHHHHhccCCCCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence            4677776 689999999999999  655  8999999999988

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=83.13  E-value=0.8  Score=34.96  Aligned_cols=37  Identities=14%  Similarity=0.057  Sum_probs=32.5

Q ss_pred             cccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           11 KKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        11 lf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      |++.|.. |++|.++||..+|+  +..  .++++|..|...|
T Consensus        27 Vl~~L~~~g~~tdeeLA~~Lgi--~~~--~VRk~L~~L~e~g   64 (178)
T PRK06266         27 VLKALIKKGEVTDEEIAEQTGI--KLN--TVRKILYKLYDAR   64 (178)
T ss_pred             HHHHHHHcCCcCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence            6677765 89999999999999  655  8999999999988

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=83.02  E-value=0.51  Score=36.14  Aligned_cols=62  Identities=18%  Similarity=0.178  Sum_probs=44.9

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCC------Cc-ccEEEe
Q 037818          134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSI------PA-ADAIFM  197 (199)
Q Consensus       134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~------P~-aD~~~l  197 (199)
                      .++||+=+|+|.++.+.+.+.-. + ++.+|. +..+...+++       ++++.+.+|.+..+      .. .|+|++
T Consensus        44 ~~vLDLFaGSGalGlEALSRGA~-~-v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl  120 (183)
T PF03602_consen   44 ARVLDLFAGSGALGLEALSRGAK-S-VVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL  120 (183)
T ss_dssp             -EEEETT-TTSHHHHHHHHTT-S-E-EEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred             CeEEEcCCccCccHHHHHhcCCC-e-EEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence            79999999999999999887733 4 788886 5666666543       57899999977522      23 399886

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors

Probab=82.99  E-value=1.1  Score=27.89  Aligned_cols=39  Identities=23%  Similarity=0.227  Sum_probs=31.1

Q ss_pred             cccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            9 GGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         9 lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      ..+...|.+++.+..+|++.+++  +..  .+.+.|+.|.+.|
T Consensus        10 ~~il~~l~~~~~~~~ei~~~~~i--~~~--~i~~~l~~L~~~g   48 (78)
T cd00090          10 LRILRLLLEGPLTVSELAERLGL--SQS--TVSRHLKKLEEAG   48 (78)
T ss_pred             HHHHHHHHHCCcCHHHHHHHHCc--CHh--HHHHHHHHHHHCC
Confidence            34555555556999999999999  665  8899999998887

ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.

>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator)

Probab=82.46  E-value=1.4  Score=31.40  Aligned_cols=30  Identities=33%  Similarity=0.416  Sum_probs=27.6

Q ss_pred             CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           18 TPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      ++.|.++||+.+++  ++.  .++++|+.|...|
T Consensus        24 ~~~s~~eia~~~~i--~~~--~v~~il~~L~~~g   53 (132)
T TIGR00738        24 GPVSVKEIAERQGI--SRS--YLEKILRTLRRAG   53 (132)
T ss_pred             CcCcHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            48999999999999  766  9999999999988

This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.13  E-value=1.3  Score=32.96  Aligned_cols=63  Identities=19%  Similarity=0.173  Sum_probs=43.6

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-------CCCceEEeCCCCC
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-------ILGVTHIGGDTFK  187 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-------~~ri~~~~gd~f~  187 (199)
                      .++...+ -....+++|+|.|.|....+.++.. -.+ ++.++| |..+.-++-       ..+.+|.--|+|+
T Consensus        63 nVLSll~-~n~~GklvDlGSGDGRiVlaaar~g-~~~-a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK  133 (199)
T KOG4058|consen   63 NVLSLLR-GNPKGKLVDLGSGDGRIVLAAARCG-LRP-AVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWK  133 (199)
T ss_pred             HHHHHcc-CCCCCcEEeccCCCceeehhhhhhC-CCc-CCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhh
Confidence            4444443 2334799999999999988888766 455 778887 555555542       1667777788875

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=82.01  E-value=2.9  Score=33.10  Aligned_cols=69  Identities=14%  Similarity=0.068  Sum_probs=52.2

Q ss_pred             ccchhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC-----CCceEEeCCC
Q 037818          114 GVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI-----LGVTHIGGDT  185 (199)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~-----~ri~~~~gd~  185 (199)
                      .+.++.....+++.  .++..+||.||=|-|.....+.++.|+.+ -|+---|.|...-+..     ++|....|-.
T Consensus        85 ~WEtpiMha~A~ai--~tkggrvLnVGFGMgIidT~iQe~~p~~H-~IiE~hp~V~krmr~~gw~ek~nViil~g~W  158 (271)
T KOG1709|consen   85 RWETPIMHALAEAI--STKGGRVLNVGFGMGIIDTFIQEAPPDEH-WIIEAHPDVLKRMRDWGWREKENVIILEGRW  158 (271)
T ss_pred             hhhhHHHHHHHHHH--hhCCceEEEeccchHHHHHHHhhcCCcce-EEEecCHHHHHHHHhcccccccceEEEecch
Confidence            33343333444443  47779999999999999999999999999 9999999999987753     5666666533

>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR

Probab=81.87  E-value=1.5  Score=31.64  Aligned_cols=30  Identities=20%  Similarity=0.235  Sum_probs=27.7

Q ss_pred             CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           18 TPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      ++.|+++||+++++  ++.  .++++|+.|...|
T Consensus        24 ~~~s~~~ia~~~~i--p~~--~l~kil~~L~~~g   53 (135)
T TIGR02010        24 GPVTLADISERQGI--SLS--YLEQLFAKLRKAG   53 (135)
T ss_pred             CcCcHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            58999999999999  776  9999999999988

This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=81.74  E-value=2.3  Score=33.22  Aligned_cols=55  Identities=16%  Similarity=0.062  Sum_probs=31.7

Q ss_pred             CcceEEEecCCc---cHHHHHHHHHC-CCCCeeeeccc--hHHHhcCCC----CCCceEEeCCCCC
Q 037818          132 GVKQLVDVGGSA---GDCLRMILQKH-RFICEGINFDL--PEVVGEAPS----ILGVTHIGGDTFK  187 (199)
Q Consensus       132 ~~~~vvDvGGG~---G~~~~~l~~~~-P~l~~~~v~Dl--p~v~~~a~~----~~ri~~~~gd~f~  187 (199)
                      +..+|+.+|--+   -.+...+++.+ ++.+ ++.+|.  +..-..+.+    .+||+++.||--+
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~-VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d   96 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGK-VIGIDIDIRPHNRKAIESHPMSPRITFIQGDSID   96 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---E-EEEEES-GTT--S-GGGG----TTEEEEES-SSS
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCce-EEEEeCCcchhchHHHhhccccCceEEEECCCCC
Confidence            458999999544   44666677777 8888 999998  222222222    3999999999875

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets

Probab=80.87  E-value=1.5  Score=26.17  Aligned_cols=36  Identities=17%  Similarity=0.341  Sum_probs=26.6

Q ss_pred             cccc--CCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           12 KVRL--ANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        12 f~~L--~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      ...|  .+++.|.++||+.+++  +..  -+.+-+..|...|
T Consensus         6 l~~L~~~~~~it~~eLa~~l~v--S~r--Ti~~~i~~L~~~~   43 (55)
T PF08279_consen    6 LKLLLESKEPITAKELAEELGV--SRR--TIRRDIKELREWG   43 (55)
T ss_dssp             HHHHHHTTTSBEHHHHHHHCTS---HH--HHHHHHHHHHHTT
T ss_pred             HHHHHHcCCCcCHHHHHHHhCC--CHH--HHHHHHHHHHHCC
Confidence            3445  3467999999999999  655  7788888777655

The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....

>COG2345 Predicted transcriptional regulator [Transcription]

Probab=80.85  E-value=1.5  Score=34.61  Aligned_cols=37  Identities=22%  Similarity=0.173  Sum_probs=31.4

Q ss_pred             cccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           11 KKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        11 lf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      |...|. .+|.|+.|||+++|+  ++.  .+++=|..|++.|
T Consensus        16 il~lL~~~g~~sa~elA~~Lgi--s~~--avR~HL~~Le~~G   53 (218)
T COG2345          16 ILELLKKSGPVSADELAEELGI--SPM--AVRRHLDDLEAEG   53 (218)
T ss_pred             HHHHHhccCCccHHHHHHHhCC--CHH--HHHHHHHHHHhCc
Confidence            334444 599999999999999  776  8999999999999

>PRK09834 DNA-binding transcriptional activator MhpR; Provisional

Probab=80.77  E-value=1.1  Score=36.16  Aligned_cols=39  Identities=13%  Similarity=0.003  Sum_probs=32.3

Q ss_pred             cccccccCC--CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            9 GGKKVRLAN--TPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         9 lglf~~L~~--g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      +.|.+.|.+  ++.|+.|||+.+|+  +..  .+.|+|..|+..|
T Consensus        14 l~iL~~l~~~~~~ls~~eia~~lgl--~ks--tv~RlL~tL~~~g   54 (263)
T PRK09834         14 LMVLRALNRLDGGATVGLLAELTGL--HRT--TVRRLLETLQEEG   54 (263)
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            345666653  56999999999999  655  8999999999999

>PHA02943 hypothetical protein; Provisional

Probab=80.76  E-value=1.3  Score=32.73  Aligned_cols=37  Identities=19%  Similarity=0.100  Sum_probs=30.9

Q ss_pred             cccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           11 KKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        11 lf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      +.+.|..|..|..|||+++|+  +-.  .++-.|..|...|
T Consensus        16 ILE~Lk~G~~TtseIAkaLGl--S~~--qa~~~LyvLErEG   52 (165)
T PHA02943         16 TLRLLADGCKTTSRIANKLGV--SHS--MARNALYQLAKEG   52 (165)
T ss_pred             HHHHHhcCCccHHHHHHHHCC--CHH--HHHHHHHHHHHcC
Confidence            445566799999999999999  544  7888899999999

>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial

Probab=80.70  E-value=1.8  Score=30.94  Aligned_cols=31  Identities=26%  Similarity=0.398  Sum_probs=28.2

Q ss_pred             CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           17 NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        17 ~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      +++.|+.+||+++++  ++.  .+.++|+.|...|
T Consensus        23 ~~~~s~~eia~~l~i--s~~--~v~~~l~~L~~~G   53 (130)
T TIGR02944        23 SQPYSAAEIAEQTGL--NAP--TVSKILKQLSLAG   53 (130)
T ss_pred             CCCccHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            467999999999999  666  9999999999999

The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.

>PRK10857 DNA-binding transcriptional regulator IscR; Provisional

Probab=80.29  E-value=1.7  Score=32.63  Aligned_cols=30  Identities=20%  Similarity=0.235  Sum_probs=27.8

Q ss_pred             CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           18 TPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      ++.|+++||+++++  ++.  .+.++|..|...|
T Consensus        24 ~~vs~~eIA~~~~i--p~~--~l~kIl~~L~~aG   53 (164)
T PRK10857         24 GPVPLADISERQGI--SLS--YLEQLFSRLRKNG   53 (164)
T ss_pred             CcCcHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            68999999999999  766  9999999999999

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=80.27  E-value=0.99  Score=34.34  Aligned_cols=56  Identities=18%  Similarity=0.209  Sum_probs=41.6

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC---------CCceEEeCCCCC
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI---------LGVTHIGGDTFK  187 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~---------~ri~~~~gd~f~  187 (199)
                      .+...||-+|+|-=.....+...+++++ .+=+|+|+|++.-++.         ...+++++|+.+
T Consensus        77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~-~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~  141 (183)
T PF04072_consen   77 PGARQVVNLGAGLDTRAYRLDNPAGGVR-WFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRD  141 (183)
T ss_dssp             TTESEEEEET-TT--HHHHHHHTTTTEE-EEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTS
T ss_pred             CCCcEEEEcCCCCCchHHHhhccccceE-EEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccc
Confidence            4566999999999999999999889899 9999999998765431         236789999985

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	199
1kyw_A	365	Crystal Structure Analysis Of Caffeic Acid5-Hydroxy		6e-31
3p9c_A	364	Crystal Structure Of Perennial Ryegrass Lpomt1 Boun		5e-28
3reo_A	368	Monolignol O-Methyltransferase (Momt) Length = 368		2e-27
1fp1_D	372	Crystal Structure Analysis Of Chalcone O-Methyltran		8e-27
1fpq_A	372	Crystal Structure Analysis Of Selenomethionine Subs		7e-25
1fp2_A	352	Crystal Structure Analysis Of Isoflavone O-Methyltr		5e-12
2qyo_A	357	Crystal Structure Of Isoflavone O-Methyltransferase		3e-11
1fpx_A	352	Crystal Structure Analysis Of Selenomethionine Subs		1e-10
1zga_A	357	Crystal Structure Of Isoflavanone 4'-o-methyltransf		7e-08
1zg3_A	358	Crystal Structure Of The Isoflavanone 4'-O-Methyltr		7e-08
1zgj_A	354	Crystal Structure Of Isoflavanone 4'-O-Methyltransf		8e-08
2ip2_A	334	Structure Of The Pyocyanin Biosynthetic Protein Phz		1e-06

>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365

Iteration: 1
 Score =  130 bits (326), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 69/154 (44%), Positives = 94/154 (61%), Gaps = 2/154 (1%)
Query: 46  LLTSYGGLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMN 105
           L+ +  G+S +   L +    LM +W  + +AVLD  I PF K +G  A+ Y+G  P  N
Sbjct: 115 LVKNEDGVSISALNLMNQDKVLMESWYHLKDAVLDGGI-PFNKAYGMTAFEYHGTDPRFN 173
Query: 106 GLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL 165
            +  K MS  S   +  +L+ Y GF+G+K LVDVGG  G  +  I+ K+  I +GINFDL
Sbjct: 174 KVFNKGMSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTI-KGINFDL 232
Query: 166 PEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
           P V+ +APS  GV H+GGD F SIP ADA+FMKW
Sbjct: 233 PHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKW 266

>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364

Iteration: 1
 Score =  120 bits (301), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 72/213 (33%), Positives = 106/213 (49%), Gaps = 35/213 (16%)
Query: 20  LSASQILTRILPSGDGDAENL-QRILRLLTSYG--------------------------- 51
           L+ +++  ++  + + +A ++  RILRLL SY                            
Sbjct: 57  LTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFL 116
Query: 52  -----GLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNG 106
                G+S A   L +    LM +W  + +AVLD  I PF K +G  A+ Y+G  P  N 
Sbjct: 117 TPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGI-PFNKAYGMSAFEYHGTDPRFNR 175
Query: 107 LMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP 166
           +  + M   S+     +L+ Y+GF+G+  LVDVGG  G  +  I   H    +G+NFDLP
Sbjct: 176 VFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAI-AAHYPTIKGVNFDLP 234
Query: 167 EVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
            V+ EAP   GVTH+GGD FK +P+ D I MKW
Sbjct: 235 HVISEAPQFPGVTHVGGDMFKEVPSGDTILMKW 267

>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368

Iteration: 1
 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/174 (39%), Positives = 99/174 (56%), Gaps = 4/174 (2%)
Query: 28  RILPSGDGDA-ENLQRILRLLT-SYGGLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEP 85
           R LPSG  +    L  + + LT +  G+S AP++L      L+  W  + +A+L+  I P
Sbjct: 98  RELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGI-P 156
Query: 86  FVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGD 145
           F K +G   + Y+G    +N +  K MS  S   +  +L+ YNGF+G+  +VDVGG  G 
Sbjct: 157 FNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGA 216
Query: 146 CLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
              MI+ K+  I   INFDLP V+ +AP+  GV H+GGD F  +P  DAIF+KW
Sbjct: 217 VASMIVAKYPSI-NAINFDLPHVIQDAPAFSGVEHLGGDMFDGVPKGDAIFIKW 269

>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372

Iteration: 1
 Score =  116 bits (290), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 57/133 (42%), Positives = 82/133 (61%), Gaps = 1/133 (0%)
Query: 66  ALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLD 125
           AL+  W    EAV+D  I+ F  VHG   Y + GK  +MN +  K+M  V    +  +L+
Sbjct: 143 ALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLE 202
Query: 126 GYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDT 185
            Y GF+G+  LVDVGG +G  L +I+ K+  I +GINFDLP+V+  AP + G+ H+GGD 
Sbjct: 203 IYTGFEGISTLVDVGGGSGRNLELIISKYPLI-KGINFDLPQVIENAPPLSGIEHVGGDM 261
Query: 186 FKSIPAADAIFMK 198
           F S+P  DA+ +K
Sbjct: 262 FASVPQGDAMILK 274

>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372

Iteration: 1
 Score =  110 bits (274), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 55/133 (41%), Positives = 77/133 (57%), Gaps = 1/133 (0%)
Query: 66  ALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLD 125
           AL+  W    EAV+D  I+ F  VHG   Y + GK  + N +  K+   V        L+
Sbjct: 143 ALLQVWXNFKEAVVDEDIDLFKNVHGVTKYEFXGKDKKXNQIFNKSXVDVCATEXKRXLE 202
Query: 126 GYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDT 185
            Y GF+G+  LVDVGG +G  L +I+ K+  I +GINFDLP+V+  AP + G+ H+GGD 
Sbjct: 203 IYTGFEGISTLVDVGGGSGRNLELIISKYPLI-KGINFDLPQVIENAPPLSGIEHVGGDX 261
Query: 186 FKSIPAADAIFMK 198
           F S+P  DA  +K
Sbjct: 262 FASVPQGDAXILK 274

>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 93/210 (44%), Gaps = 35/210 (16%)
Query: 19  PLSASQILTRILPSGDGDAENLQRILRLLTSYG------------GLSYAPYMLQHHQDA 66
           P+S S +++ IL        N++R++R L   G             L+ A  +L    D 
Sbjct: 51  PISLSNLVS-ILQVPSSKIGNVRRLMRYLAHNGFFEIITKEEESYALTVASELLVRGSDL 109
Query: 67  LMSAWPLVHEAVLDPTIE----------------PFVKVHGEPAYSYYGKMPEMNGLMRK 110
            ++  P+V E VLDPT+                  F    G   + +  K PE N     
Sbjct: 110 CLA--PMV-ECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFND 166
Query: 111 AMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDLPEVV 169
           AM+  S     ++ D    F G++ +VDVGG  G   ++I +   +  C  I FD P+VV
Sbjct: 167 AMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKC--IVFDRPQVV 224
Query: 170 GEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
                   +T++GGD F SIP ADA+ +K+
Sbjct: 225 ENLSGSNNLTYVGGDMFTSIPNADAVLLKY 254

>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 95/223 (42%), Gaps = 47/223 (21%)
Query: 10  GKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG-----------------G 52
           GK + L+N        L  IL       +N+QR++R L   G                  
Sbjct: 49  GKPITLSN--------LVSILQIPSTKVDNVQRLMRYLAHNGFFEIITNQELENEEEAYA 100
Query: 53  LSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEP----------------FVKVHGEPAYS 96
           L+ A  +L    +  ++  P+V E VLDPT+                  F    G   + 
Sbjct: 101 LTVASELLVKGTELCLA--PMV-ECVLDPTLSTSFHNLKKWVYEEDLTLFAVNLGCDLWE 157
Query: 97  YYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-R 155
           +  K PE N L   A++  S     ++ D    F+G++ +VDVGG  G   ++I +   +
Sbjct: 158 FLNKNPEYNTLYNDALASDSKMINLAMKDCNLVFEGLESIVDVGGGNGTTGKIICETFPK 217
Query: 156 FICEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMK 198
             C  + FD P+VV        +T++GGD F S+P ADA+ +K
Sbjct: 218 LTC--VVFDRPKVVENLCGSNNLTYVGGDMFISVPKADAVLLK 258

>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 90/210 (42%), Gaps = 35/210 (16%)
Query: 19  PLSASQILTRILPSGDGDAENLQRILRLLTSYG------------GLSYAPYMLQHHQDA 66
           P+S S +++ IL        N++R+ R L   G             L+ A  +L    D 
Sbjct: 51  PISLSNLVS-ILQVPSSKIGNVRRLXRYLAHNGFFEIITKEEESYALTVASELLVRGSDL 109
Query: 67  LMSAWPLVHEAVLDPTIEP----------------FVKVHGEPAYSYYGKMPEMNGLMRK 110
            ++  P V E VLDPT+                  F    G   + +  K PE N     
Sbjct: 110 CLA--PXV-ECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFND 166
Query: 111 AMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDLPEVV 169
           A +  S     ++ D    F G++ +VDVGG  G   ++I +   +  C  I FD P+VV
Sbjct: 167 AXASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKC--IVFDRPQVV 224
Query: 170 GEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
                   +T++GGD F SIP ADA+ +K+
Sbjct: 225 ENLSGSNNLTYVGGDXFTSIPNADAVLLKY 254

>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase Complexed With (+)-6a-hydroxymaackiain Length = 357

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 58/113 (51%), Gaps = 7/113 (6%)
Query: 91  GEPAYSYYGKMPEMNGL--MRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLR 148
           GE  + +  K  E + L   + AM+  S  F   + +    F+G++ LVDVGG  G   +
Sbjct: 149 GESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTK 208
Query: 149 MILQKHRFI--CEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
           +I   H      +   FD P+VVG       +  +GGD FKSIP+ADA+ +KW
Sbjct: 209 LI---HEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKW 258

>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase Complexed With Sah And 2,7,4'-Trihydroxyisoflavanone Length = 358

Iteration: 1
 Score = 53.5 bits (127), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 58/113 (51%), Gaps = 7/113 (6%)
Query: 91  GEPAYSYYGKMPEMNGL--MRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLR 148
           GE  + +  K  E + L   + AM+  S  F   + +    F+G++ LVDVGG  G   +
Sbjct: 150 GESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTK 209
Query: 149 MILQKHRFI--CEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
           +I   H      +   FD P+VVG       +  +GGD FKSIP+ADA+ +KW
Sbjct: 210 LI---HEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKW 259

>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase Complexed With (+)-Pisatin Length = 354

Iteration: 1
 Score = 53.5 bits (127), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 58/113 (51%), Gaps = 7/113 (6%)
Query: 91  GEPAYSYYGKMPEMNGL--MRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLR 148
           GE  + +  K  E + L   + AM+  S  F   + +    F+G++ LVDVGG  G   +
Sbjct: 146 GESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTK 205
Query: 149 MILQKHRFI--CEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
           +I   H      +   FD P+VVG       +  +GGD FKSIP+ADA+ +KW
Sbjct: 206 LI---HEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKW 255

>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm Length = 334

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 81/192 (42%), Gaps = 37/192 (19%)
Query: 36  DAENLQRILRLLTSY--------GGLSYAPY-------------MLQHHQDALMSAWPLV 74
           DAE + R++RLL ++         G +  P              M+  + +   +AW   
Sbjct: 54  DAERIHRLMRLLVAFEIFQGDTRDGYANTPTSHLLRDVEGSFRDMVLFYGEEFHAAWTPA 113
Query: 75  HEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPF--ITSVLDGYNGFKG 132
            EA+L  T   F    GE  YSY  + P+       AM   ++ F  I  +LD    F+G
Sbjct: 114 CEALLSGT-PGFELAFGEDFYSYLKRCPDAGRRFLLAMKASNLAFHEIPRLLD----FRG 168
Query: 133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILG-------VTHIGGDT 185
            +  VDVGG +G+  + ILQ       G+  D    +G A   L        V+ +GGD 
Sbjct: 169 -RSFVDVGGGSGELTKAILQAEP-SARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDM 226
Query: 186 FKSIPAADAIFM 197
            + +P+   I++
Sbjct: 227 LQEVPSNGDIYL 238

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	199
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	1e-50
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	2e-50
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	2e-49
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	2e-49
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	7e-48
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	4e-45
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	9e-44
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	5e-43
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	5e-43
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	6e-42
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	2e-41
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	1e-29
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	1e-26
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	1e-25
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	3e-24

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372

 Score =  166 bits (422), Expect = 1e-50
 Identities = 69/217 (31%), Positives = 100/217 (46%), Gaps = 35/217 (16%)

Query: 17  NTPLSASQILTR--ILPSGDGDAENLQRILRLLTSYG----------------------- 51
              +S S+I ++             L R+LRLL SY                        
Sbjct: 60  GAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMV 119

Query: 52  ---------GLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMP 102
                        A +       AL+  W    EAV+D  I+ F  VHG   Y + GK  
Sbjct: 120 GKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDK 179

Query: 103 EMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGIN 162
           +MN +  K+M  V    +  +L+ Y GF+G+  LVDVGG +G  L +I+ K+  I +GIN
Sbjct: 180 KMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLI-KGIN 238

Query: 163 FDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
           FDLP+V+  AP + G+ H+GGD F S+P  DA+ +K 
Sbjct: 239 FDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKA 275

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368

 Score =  165 bits (420), Expect = 2e-50
 Identities = 70/215 (32%), Positives = 105/215 (48%), Gaps = 34/215 (15%)

Query: 17  NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG------------------------- 51
           +  +S ++I  ++  +       L R+LRLL SY                          
Sbjct: 57  SGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCK 116

Query: 52  -------GLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEM 104
                  G+S AP++L      L+  W  + +A+L+  I PF K +G   + Y+G    +
Sbjct: 117 FLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGI-PFNKAYGMNIFDYHGTDHRI 175

Query: 105 NGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFD 164
           N +  K MS  S   +  +L+ YNGF+G+  +VDVGG  G    MI+ K+  I   INFD
Sbjct: 176 NKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSI-NAINFD 234

Query: 165 LPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
           LP V+ +AP+  GV H+GGD F  +P  DAIF+KW
Sbjct: 235 LPHVIQDAPAFSGVEHLGGDMFDGVPKGDAIFIKW 269

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352

 Score =  163 bits (413), Expect = 2e-49
 Identities = 49/209 (23%), Positives = 85/209 (40%), Gaps = 27/209 (12%)

Query: 16  ANTPLSASQILTRILPSGDGDAENLQRILRLLTSYGGL---------------------- 53
              P+S S +++  L        N++R++R L   G                        
Sbjct: 48  HGKPISLSNLVSI-LQVPSSKIGNVRRLMRYLAHNGFFEIITKEEESYALTVASELLVRG 106

Query: 54  ---SYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRK 110
                AP +       L  ++  + + + +  +  F    G   + +  K PE N     
Sbjct: 107 SDLCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFND 166

Query: 111 AMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVG 170
           AM+  S     ++ D    F G++ +VDVGG  G   ++I +    + + I FD P+VV 
Sbjct: 167 AMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKL-KCIVFDRPQVVE 225

Query: 171 EAPSILGVTHIGGDTFKSIPAADAIFMKW 199
                  +T++GGD F SIP ADA+ +K+
Sbjct: 226 NLSGSNNLTYVGGDMFTSIPNADAVLLKY 254

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364

 Score =  163 bits (413), Expect = 2e-49
 Identities = 72/215 (33%), Positives = 107/215 (49%), Gaps = 35/215 (16%)

Query: 18  TPLSASQILTRILPSGDGDA-ENLQRILRLLTSYG------------------------- 51
             L+ +++  ++  + + +A + + RILRLL SY                          
Sbjct: 55  KSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCK 114

Query: 52  -------GLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEM 104
                  G+S A   L +    LM +W  + +AVLD  I PF K +G  A+ Y+G  P  
Sbjct: 115 FLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGI-PFNKAYGMSAFEYHGTDPRF 173

Query: 105 NGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFD 164
           N +  + M   S+     +L+ Y+GF+G+  LVDVGG  G  +  I   +  I +G+NFD
Sbjct: 174 NRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTI-KGVNFD 232

Query: 165 LPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
           LP V+ EAP   GVTH+GGD FK +P+ D I MKW
Sbjct: 233 LPHVISEAPQFPGVTHVGGDMFKEVPSGDTILMKW 267

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348

 Score =  158 bits (402), Expect = 7e-48
 Identities = 44/213 (20%), Positives = 75/213 (35%), Gaps = 34/213 (15%)

Query: 14  RLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG---------------------- 51
            L + P + +++          DA+ L+R+LRLL                          
Sbjct: 50  HLVDGPRTPAELAAAT----GTDADALRRVLRLLAVRDVVRESDGRFALTDKGAALRSDS 105

Query: 52  GLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKA 111
            +     +L        +    V  A+       F  + G    +Y+    E+  L  + 
Sbjct: 106 PVPARAGILMFTDTMFWTMSHRVASALGPERP-AFADIFGSSLDAYFDGDAEVEALYYEG 164

Query: 112 MSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVV-- 169
           M  VS      +      F     + DVGG  G  L  +L++H  + +G+  D  EVV  
Sbjct: 165 METVSAAEHLILARAG-DFPATGTVADVGGGRGGFLLTVLREHPGL-QGVLLDRAEVVAR 222

Query: 170 --GEAPSILG-VTHIGGDTFKSIPAADAIFMKW 199
              +AP + G    + GD  + +P AD   +K 
Sbjct: 223 HRLDAPDVAGRWKVVEGDFLREVPHADVHVLKR 255

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369

 Score =  152 bits (385), Expect = 4e-45
 Identities = 46/217 (21%), Positives = 72/217 (33%), Gaps = 39/217 (17%)

Query: 15  LANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG----------------------- 51
           L   P +A+ +            + L+R+LRLL + G                       
Sbjct: 67  LQEGPRTATALAEAT----GAHEQTLRRLLRLLATVGVFDDLGHDDLFAQNALSAVLLPD 122

Query: 52  -GLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRK 110
                A             AW  +  +V       F   +G   +    + P+   L  +
Sbjct: 123 PASPVATDARFQAAPWHWRAWEQLTHSVRTGEA-SFDVANGTSFWQLTHEDPKARELFNR 181

Query: 111 AMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVG 170
           AM  VS+     V   Y+ F G    VD+GG  G  +  +L     +  G   + P V  
Sbjct: 182 AMGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGL-RGTLLERPPVAE 239

Query: 171 EAPSIL-------GVTHIGGDTFKSIP-AADAIFMKW 199
           EA  +L           + GD F++IP  AD   +K 
Sbjct: 240 EARELLTGRGLADRCEILPGDFFETIPDGADVYLIKH 276

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358

 Score =  148 bits (375), Expect = 9e-44
 Identities = 52/220 (23%), Positives = 81/220 (36%), Gaps = 38/220 (17%)

Query: 16  ANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG------------------------ 51
              P++ S++ +  L         L R LRLLT  G                        
Sbjct: 42  HGKPMTLSELASS-LKLHPSKVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTP 100

Query: 52  ---------GLSYAPYMLQHHQDALMSAWPLVHEAVL-DPTIEPFVKVHGEPAYSYYGKM 101
                        +  +      + +  W    +    D     F    GE  + +  K 
Sbjct: 101 PSKLLISGKPTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKD 160

Query: 102 PEMNGLMR--KAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICE 159
            E + L     AM+  S  F   + +    F+G++ LVDVGG  G   ++I +    +  
Sbjct: 161 SESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLK- 219

Query: 160 GINFDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW 199
              FD P+VVG       +  +GGD FKSIP+ADA+ +KW
Sbjct: 220 CTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKW 259

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332

 Score =  145 bits (369), Expect = 5e-43
 Identities = 35/218 (16%), Positives = 66/218 (30%), Gaps = 39/218 (17%)

Query: 14  RLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG---------------------- 51
            +A    +A++I +         A++L R+LR L + G                      
Sbjct: 33  HIAAGHRTAAEIASAA----GAHADSLDRLLRHLVAVGLFTRDGQGVYGLTEFGEQLRDD 88

Query: 52  -GLSYAPYMLQHHQDA-LMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMR 109
                  ++  +         +  +  ++       +   +G   +   G  P ++    
Sbjct: 89  HAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQP-AYPVRYGTSFWEDLGSDPVLSASFD 147

Query: 110 KAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVV 169
             MS       T +   Y  +  +  +VDVGG +G  L  +L  H  +  G   DL    
Sbjct: 148 TLMSHHLELDYTGIAAKY-DWAALGHVVDVGGGSGGLLSALLTAHEDL-SGTVLDLQGPA 205

Query: 170 GEAPSIL-------GVTHIGGDTFKSIPA-ADAIFMKW 199
             A               + G  F  +PA A    +  
Sbjct: 206 SAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSA 243

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360

 Score =  146 bits (370), Expect = 5e-43
 Identities = 36/218 (16%), Positives = 71/218 (32%), Gaps = 39/218 (17%)

Query: 14  RLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG---------------------- 51
            +     +   +  R     D   E L R++R L + G                      
Sbjct: 47  HILAGARTVKALAART----DTRPEALLRLIRHLVAIGLLEEDAPGEFVPTEVGELLADD 102

Query: 52  --GLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMR 109
                 A + L         ++  + +A+       +  ++G+P Y      P++     
Sbjct: 103 HPAAQRAWHDLTQAVARADISFTRLPDAIRTGRP-TYESIYGKPFYEDLAGRPDLRASFD 161

Query: 110 KAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVV 169
             ++        +    Y  +  V+ ++DVGG  G     I ++   +      ++   V
Sbjct: 162 SLLACDQDVAFDAPAAAY-DWTNVRHVLDVGGGKGGFAAAIARRAPHV-SATVLEMAGTV 219

Query: 170 GEAPSIL-------GVTHIGGDTFKSIPA-ADAIFMKW 199
             A S L        V  + GD F+ +P  ADAI + +
Sbjct: 220 DTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSF 257

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334

 Score =  143 bits (362), Expect = 6e-42
 Identities = 46/215 (21%), Positives = 79/215 (36%), Gaps = 38/215 (17%)

Query: 14  RLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYGGLSYAP---------------- 57
            + +   S   +   +      DAE + R++RLL ++                       
Sbjct: 36  LIESGIDSDETLAAAV----GSDAERIHRLMRLLVAFEIFQGDTRDGYANTPTSHLLRDV 91

Query: 58  -----YMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAM 112
                 M+  + +   +AW    EA+L  T   F    GE  YSY  + P+       AM
Sbjct: 92  EGSFRDMVLFYGEEFHAAWTPACEALLSGTP-GFELAFGEDFYSYLKRCPDAGRRFLLAM 150

Query: 113 SGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEA 172
              ++     +    + F+G +  VDVGG +G+  + ILQ       G+  D    +G A
Sbjct: 151 KASNL-AFHEIPRLLD-FRG-RSFVDVGGGSGELTKAILQAEPSA-RGVMLDREGSLGVA 206

Query: 173 PSIL-------GVTHIGGDTFKSIPA-ADAIFMKW 199
              L        V+ +GGD  + +P+  D   +  
Sbjct: 207 RDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLLSR 241

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374

 Score =  142 bits (360), Expect = 2e-41
 Identities = 39/220 (17%), Positives = 64/220 (29%), Gaps = 41/220 (18%)

Query: 14  RLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG---------------------- 51
            L     + + +  R     D   + L R++R LT  G                      
Sbjct: 44  HLLAGADTLAGLADRT----DTHPQALSRLVRHLTVVGVLEGGEKQGRPLRPTRLGMLLA 99

Query: 52  ----GLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGL 107
                   A   L         A+  + + V       +   +G P +        +   
Sbjct: 100 DGHPAQQRAWLDLNGAVSHADLAFTGLLDVVRTGRP-AYAGRYGRPFWEDLSADVALADS 158

Query: 108 MRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPE 167
               MS        +  D Y  +  V+ ++DVGG  G  L  I  +   +  G   +L  
Sbjct: 159 FDALMSCDEDLAYEAPADAY-DWSAVRHVLDVGGGNGGMLAAIALRAPHL-RGTLVELAG 216

Query: 168 VVGEAPSIL-------GVTHIGGDTFKSIPA-ADAIFMKW 199
               A            VT   GD FK +P  AD + + +
Sbjct: 217 PAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSF 256

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359

 Score =  110 bits (278), Expect = 1e-29
 Identities = 32/219 (14%), Positives = 61/219 (27%), Gaps = 46/219 (21%)

Query: 14  RLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG---------------------- 51
            +A  P   + +              L+ +L  L                          
Sbjct: 59  HMAEGPKDLATLAADT----GSVPPRLEMLLETLRQMRVINLEDGKWSLTEFADYMFSPT 114

Query: 52  ---GLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLM 108
                 +   + +         +  + +AV           + +    Y     E N   
Sbjct: 115 PKEPNLHQTPVAKAMAFLADDFYMGLSQAVRGQK-------NFKGQVPYPPVTREDNLYF 167

Query: 109 RKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEV 168
            +     +   I  +L+      GVK+++DVGG  GD    +L+    + +    +LP  
Sbjct: 168 EEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPEL-DSTILNLPGA 225

Query: 169 VGEAPSILG-------VTHIGGDTFK-SIPAADAIFMKW 199
           +               +  I  D +K S P ADA+    
Sbjct: 226 IDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCR 264

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335

 Score =  102 bits (257), Expect = 1e-26
 Identities = 27/222 (12%), Positives = 54/222 (24%), Gaps = 51/222 (22%)

Query: 14  RLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG---------------------- 51
            ++    S+  +  +           ++ +   L   G                      
Sbjct: 34  AISQGIESSQSLAQKC----QTSERGMRMLCDYLVIIGFMTKQAEGYRLTSDSAMFLDRQ 89

Query: 52  -GLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKM---PEMNGL 107
                   +       + + +  +  AVL           G  A S  G +     +   
Sbjct: 90  SKFYVGDAIEFLLSPMITNGFNDLTAAVLK----------GGTAISSEGTLSPEHPVWVQ 139

Query: 108 MRKAMSGVSVPFITSVLDGYN-GFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP 166
             KAMS +       +    N       +++D+  S G     + Q +    E    D  
Sbjct: 140 FAKAMSPMMANPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNA-EIFGVDWA 198

Query: 167 EVVGEAPSILG-------VTHIGGDTFKS--IPAADAIFMKW 199
            V+  A               I G  F+       D + +  
Sbjct: 199 SVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPN 240

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352

 Score =  100 bits (251), Expect = 1e-25
 Identities = 32/215 (14%), Positives = 59/215 (27%), Gaps = 48/215 (22%)

Query: 19  PLSASQILTRILPSGDGDAENLQRILRLLTSYG-----------------------GLSY 55
             + +++                 +L  L + G                           
Sbjct: 56  GRTPAEVAASF----GMVEGKAAILLHALAALGLLTKEGDAFRNTALTERYLTTTSADYI 111

Query: 56  APYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGV 115
            P +   HQ      WP + E +         K       S +            AM  +
Sbjct: 112 GPIVE--HQYLQWDNWPRLGEILRSE------KPLAFQQESRFAHDTRARDAFNDAMVRL 163

Query: 116 SVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI 175
           S P +  V +    F   + ++D+ G  G  L  +L++H  +  G  +DLP     A   
Sbjct: 164 SQPMVDVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQL-TGQIWDLPTTRDAARKT 221

Query: 176 LG-------VTHIGGDTFKSIP----AADAIFMKW 199
           +        V     +   +      AAD + +  
Sbjct: 222 IHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLND 256

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363

 Score = 96.7 bits (241), Expect = 3e-24
 Identities = 35/217 (16%), Positives = 64/217 (29%), Gaps = 40/217 (18%)

Query: 16  ANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG---------GL----------SYA 56
                +  +I  R            Q +L    + G          L            A
Sbjct: 47  KREGYTLQEISGRT----GLTRYAAQVLLEASLTIGTILLEEDRYVLAKAGWFLLNDKMA 102

Query: 57  PYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHG--EPAYSYYGKMPE-MNGLMRKAMS 113
              ++ + D        + EA+L+      +KV G     Y    ++PE +         
Sbjct: 103 RVNMEFNHDVNYQGLFHLEEALLNGRP-EGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDH 161

Query: 114 GVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAP 173
             S       L+        K+L+D+GG+ G      +Q ++ + E    DLP+ +    
Sbjct: 162 FYSDQSFGKALEIVF-SHHPKRLLDIGGNTGKWATQCVQYNKEV-EVTIVDLPQQLEMMR 219

Query: 174 SILG-------VTHIGGDTFK---SIPA-ADAIFMKW 199
                      +   G +        P   DA++M  
Sbjct: 220 KQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQ 256

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	199
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	100.0
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	100.0
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	100.0
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	100.0
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	100.0
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	100.0
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.97
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.97
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.97
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.97
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.96
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.96
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.96
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.96
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.95
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.94
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.0
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.68
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	98.66
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	98.61
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.56
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	98.55
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	98.54
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	98.53
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	98.53
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.51
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.49
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	98.48
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	98.47
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.46
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	98.46
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	98.45
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.44
3f4k_A	257	Putative methyltransferase; structural genomics, P	98.43
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.43
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.42
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	98.42
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.42
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	98.42
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.42
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.42
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	98.41
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	98.41
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	98.41
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	98.4
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	98.4
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	98.37
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	98.37
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	98.36
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	98.35
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	98.35
2b3t_A	276	Protein methyltransferase HEMK; translation termin	98.34
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.34
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	98.33
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	98.33
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.33
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	98.33
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	98.32
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	98.32
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	98.31
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.31
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.29
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	98.28
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	98.28
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	98.28
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.27
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	98.26
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	98.26
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	98.25
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	98.25
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	98.24
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.23
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.23
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	98.23
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.22
3ocj_A	305	Putative exported protein; structural genomics, PS	98.22
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.22
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.21
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.21
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.21
2h00_A	254	Methyltransferase 10 domain containing protein; st	98.2
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	98.2
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	98.2
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	98.2
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.19
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.19
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.18
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.18
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	98.18
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.17
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	98.16
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	98.16
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.15
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	98.15
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	98.15
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	98.14
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	98.14
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	98.13
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	98.13
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	98.12
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	98.12
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.11
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	98.11
2p7i_A	250	Hypothetical protein; putative methyltransferase,	98.11
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	98.11
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.1
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	98.1
3i9f_A	170	Putative type 11 methyltransferase; structural gen	98.1
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.1
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	98.1
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.09
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	98.08
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	98.08
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.07
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	98.07
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.06
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	98.06
3lpm_A	259	Putative methyltransferase; structural genomics, p	98.06
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.05
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.05
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	98.04
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.04
3cc8_A	230	Putative methyltransferase; structural genomics, j	98.03
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.03
3lcc_A	235	Putative methyl chloride transferase; halide methy	98.03
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	98.03
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	98.03
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	98.02
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	98.02
2esr_A	177	Methyltransferase; structural genomics, hypothetic	98.01
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	98.01
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	98.0
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	98.0
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	98.0
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	98.0
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	97.98
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	97.98
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	97.97
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	97.97
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	97.96
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	97.96
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	97.96
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	97.96
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	97.96
2frn_A	278	Hypothetical protein PH0793; structural genomics,	97.96
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	97.96
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	97.96
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	97.95
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	97.94
2b25_A	336	Hypothetical protein; structural genomics, methyl	97.94
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	97.94
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	97.94
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	97.94
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	97.93
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	97.93
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	97.91
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	97.91
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	97.91
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	97.9
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	97.9
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	97.9
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	97.9
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	97.9
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	97.9
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	97.89
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	97.88
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	97.88
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	97.87
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	97.87
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	97.86
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	97.86
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	97.86
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	97.85
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	97.85
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	97.85
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	97.84
2pt6_A	321	Spermidine synthase; transferase, structural genom	97.84
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	97.84
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	97.84
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	97.84
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	97.84
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	97.84
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	97.83
2o07_A	304	Spermidine synthase; structural genomics, structur	97.83
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	97.83
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	97.82
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	97.82
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	97.81
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	97.81
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	97.79
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	97.78
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	97.78
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	97.78
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	97.78
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	97.78
2i7c_A	283	Spermidine synthase; transferase, structural genom	97.78
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	97.78
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	97.78
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	97.77
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	97.75
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	97.74
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	97.74
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	97.74
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	97.74
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	97.73
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	97.72
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	97.72
1ws6_A	171	Methyltransferase; structural genomics, riken stru	97.7
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	97.69
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	97.68
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	97.68
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	97.67
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	97.65
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	97.65
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	97.64
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	97.63
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	97.62
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	97.58
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	97.57
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	97.57
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	97.57
3k6r_A	278	Putative transferase PH0793; structural genomics,	97.54
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	97.53
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	97.52
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	97.5
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	97.5
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	97.46
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	97.43
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	97.43
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	97.43
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	97.41
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	97.39
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.36
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	97.3
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	97.29
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	97.27
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	97.26
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	97.26
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	97.26
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	97.23
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	97.23
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	97.2
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	97.17
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	97.13
3sso_A	419	Methyltransferase; macrolide, natural product, ros	97.1
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	97.09
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	97.02
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	96.93
3ll7_A	410	Putative methyltransferase; methytransferase, stru	96.88
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	96.79
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	96.79
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	96.79
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	96.77
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	96.74
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	96.73
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	96.71
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	96.67
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	96.65
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	96.63
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	96.61
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	96.61
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	96.59
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	96.57
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	96.55
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	96.51
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	96.34
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	96.27
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	96.26
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	96.15
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	96.14
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	96.04
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	95.93
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	95.92
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	95.82
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	95.59
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	95.48
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	95.47
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	95.42
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	95.05
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	94.55
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	94.4
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	94.08
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	94.07
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	94.06
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	93.71
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	93.43
3lkd_A	542	Type I restriction-modification system methyltrans	93.43
3khk_A	544	Type I restriction-modification system methylation	93.37
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	92.14
1xn7_A	78	Hypothetical protein YHGG; alpha+beta, GFT structu	91.92
2k02_A	87	Ferrous iron transport protein C; FEOC, iron-sulfu	91.85
3pqk_A	102	Biofilm growth-associated repressor; helix-turn-he	91.55
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	91.43
3jth_A	98	Transcription activator HLYU; transcription factor	91.0
1y0u_A	96	Arsenical resistance operon repressor, putative; s	91.0
2kko_A	108	Possible transcriptional regulatory protein (possi	90.51
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	90.07
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	89.83
2heo_A	67	Z-DNA binding protein 1; protein DLM1-Z-DNA comple	89.8
2zig_A	297	TTHA0409, putative modification methylase; methylt	89.6
2htj_A	81	P fimbrial regulatory protein KS71A; winged helix-	89.52
1r1t_A	122	Transcriptional repressor SMTB; zinc, transcriptio	89.47
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	89.25
1oyi_A	82	Double-stranded RNA-binding protein; (alpha+beta)	89.19
1r1u_A	106	CZRA, repressor protein; zinc, DNA binding, transc	89.19
3cuo_A	99	Uncharacterized HTH-type transcriptional regulato;	89.13
2fu4_A	83	Ferric uptake regulation protein; DNA binding doma	88.8
2oqg_A	114	Possible transcriptional regulator, ARSR family P;	88.66
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	88.62
3f6o_A	118	Probable transcriptional regulator, ARSR family pr	87.59
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	86.34
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	86.24
1u2w_A	122	CADC repressor, cadmium efflux system accessory pr	86.11
2jt1_A	77	PEFI protein; solution structure, winged helix-tur	86.06
2jsc_A	118	Transcriptional regulator RV1994C/MT2050; cadmium,	85.84
2y75_A	129	HTH-type transcriptional regulator CYMR; DNA bindi	85.7
1jhg_A	101	Trp operon repressor; complex (regulatory protein-	85.68
2hzt_A	107	Putative HTH-type transcriptional regulator YTCD;	85.38
3r4k_A	260	Transcriptional regulator, ICLR family; DNA/RNA-bi	85.12
3mq0_A	275	Transcriptional repressor of the blcabc operon; he	85.02
1sfx_A	109	Conserved hypothetical protein AF2008; structural	83.81
1qbj_A	81	Protein (double-stranded RNA specific adenosine D	83.78
3f6v_A	151	Possible transcriptional regulator, ARSR family pr	83.69
1qgp_A	77	Protein (double stranded RNA adenosine deaminase);	83.5
2lkp_A	119	Transcriptional regulator, ARSR family; symmetric	83.24
2dbb_A	151	Putative HTH-type transcriptional regulator PH006;	82.7
1uly_A	192	Hypothetical protein PH1932; helix-turn-helix, str	82.57
2pn6_A	150	ST1022, 150AA long hypothetical transcriptional re	82.56
3lwf_A	159	LIN1550 protein, putative transcriptional regulato	82.21
2o0y_A	260	Transcriptional regulator; ICLR-family, structural	82.21
2gxg_A	146	146AA long hypothetical transcriptional regulator;	81.64
1p6r_A	82	Penicillinase repressor; transcription regulation,	81.59
1xmk_A	79	Double-stranded RNA-specific adenosine deaminase;	81.35
1sfu_A	75	34L protein; protein/Z-DNA complex, DNA binding pr	81.2
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	81.14
3tgn_A	146	ADC operon repressor ADCR; helix-turn-helix, trans	80.99
2w25_A	150	Probable transcriptional regulatory protein; trans	80.96
2g7u_A	257	Transcriptional regulator; ICLR family, structural	80.89
2d1h_A	109	ST1889, 109AA long hypothetical transcriptional re	80.86
3i4p_A	162	Transcriptional regulator, ASNC family; PSI, struc	80.42
3df8_A	111	Possible HXLR family transcriptional factor; APC89	80.21

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=100.00  E-value=9.2e-37  Score=255.11  Aligned_cols=188  Identities=20%  Similarity=0.222  Sum_probs=166.1

Q ss_pred             cchhccccccccCC--CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC---------------------------CCC
Q 037818            4 NECREGGKKVRLAN--TPLSASQILTRILPSGDGDAENLQRILRLLTSYG---------------------------GLS   54 (199)
Q Consensus         4 ~~A~~lglf~~L~~--g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g---------------------------~~~   54 (199)
                      .+|+++||||.|.+  +|+|++|||+++|+  +++  .++|+||+|+++|                           +.+
T Consensus        26 ~aa~eLglfd~L~~~~~p~t~~eLA~~~g~--~~~--~l~rlLr~L~~~gll~~~~~~~~~~y~~t~~s~~~l~~~~~~~  101 (353)
T 4a6d_A           26 FAACELGVFDLLAEAPGPLDVAAVAAGVRA--SAH--GTELLLDICVSLKLLKVETRGGKAFYRNTELSSDYLTTVSPTS  101 (353)
T ss_dssp             HHHHHHTHHHHHHHSSSCBCHHHHHHHHTC--CHH--HHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHSTTSTTC
T ss_pred             HHHHHcCHHHHHhcCCCCCCHHHHHHhhCc--CHH--HHHHHHHHHHHCCCEEEeccCccceeeCCHHHHHHhhcCCchH
Confidence            47999999999974  79999999999999  776  9999999999998                           123


Q ss_pred             hHHHHHHhcChhhHhhhhhHHHHhhCCCCChhhhhhC---CCcccccccCchhHHHHHHHHhccchhhHHHHhhhCCCCC
Q 037818           55 YAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHG---EPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFK  131 (199)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~L~~~lr~g~~~~~~~~~g---~~~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~  131 (199)
                      +.+++.+. .+..++.|.+|.+++|+|+ ++|...+|   .++|+++.++|+....|+++|...+....+.+++.++ |+
T Consensus       102 ~~~~~~~~-~~~~~~~~~~L~~~vr~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~aM~~~~~~~~~~~~~~~~-~~  178 (353)
T 4a6d_A          102 QCSMLKYM-GRTSYRCWGHLADAVREGR-NQYLETFGVPAEELFTAIYRSEGERLQFMQALQEVWSVNGRSVLTAFD-LS  178 (353)
T ss_dssp             CHHHHHHH-HHTHHHHHTTHHHHHHHTS-CCHHHHHSCCCSSHHHHHTSSHHHHHHHHHHHHTTHHHHHHHHHHSSC-GG
T ss_pred             HHHHHHHh-CHHHHHHHHHHHHHHhcCC-ChhHHhcCCChHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcC-cc
Confidence            44555443 3567889999999999999 88988887   3578999999999999999999998888899999999 99


Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCC------CCCceEEeCCCCC-CCCcccEEEecC
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPS------ILGVTHIGGDTFK-SIPAADAIFMKW  199 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~------~~ri~~~~gd~f~-~~P~aD~~~l~~  199 (199)
                      +..+|||||||+|.++.+++++||+++ ++++|+|+|++.+++      .+||++++||||+ +.|.+|+|++++
T Consensus       179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~-~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~~~D~~~~~~  252 (353)
T 4a6d_A          179 VFPLMCDLGGGAGALAKECMSLYPGCK-ITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPEADLYILAR  252 (353)
T ss_dssp             GCSEEEEETCTTSHHHHHHHHHCSSCE-EEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTSCCCCCSEEEEES
T ss_pred             cCCeEEeeCCCCCHHHHHHHHhCCCce-eEeccCHHHHHHHHHhhhhcccCceeeecCccccCCCCCceEEEeee
Confidence            999999999999999999999999999 999999999998864      2899999999997 466689999975

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=100.00  E-value=1.5e-34  Score=242.70  Aligned_cols=194  Identities=37%  Similarity=0.662  Sum_probs=171.2

Q ss_pred             cchhccccccccCC---CCCCHHHHHHHcCCCCCCC-cchHHHHHHHHhhCC----C-----------------------
Q 037818            4 NECREGGKKVRLAN---TPLSASQILTRILPSGDGD-AENLQRILRLLTSYG----G-----------------------   52 (199)
Q Consensus         4 ~~A~~lglf~~L~~---g~~t~~eLA~~~~~~~~~~-~~~l~rlL~~l~~~g----~-----------------------   52 (199)
                      ++|+++|||+.|.+   +|+|++|||+++|+..+|+ +..++||||+|++.|    .                       
T Consensus        38 ~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s~~l~  117 (364)
T 3p9c_A           38 KNAIELGLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFLT  117 (364)
T ss_dssp             HHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEEEEEECSSSCEEEEEEECGGGGGSS
T ss_pred             HHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEEeccccCCCCcCCEEecCHHHHHHc
Confidence            57999999999976   6999999999999610221 237999999999887    1                       


Q ss_pred             -----CChHHHHHHhcChhhHhhhhhHHHHhhCCCCChhhhhhCCCcccccccCchhHHHHHHHHhccchhhHHHHhhhC
Q 037818           53 -----LSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGY  127 (199)
Q Consensus        53 -----~~~~~~~~~~~~~~~~~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~  127 (199)
                           .++++++.+..++.++++|.+|.+++|+|+ ++|+..+|.++|+|+..+|+..+.|+++|..++....+.+++.+
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~  196 (364)
T 3p9c_A          118 PNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGG-IPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELY  196 (364)
T ss_dssp             CCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCS-CHHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCC-ChHHHhcCCCHHHHHHhCHHHHHHHHHHHHHhhHHHHHHHHHhc
Confidence                 135566666667778999999999999999 99999999999999999999999999999998888788888888


Q ss_pred             CCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCCCCceEEeCCCCCCCCcccEEEecC
Q 037818          128 NGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW  199 (199)
Q Consensus       128 ~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~~ri~~~~gd~f~~~P~aD~~~l~~  199 (199)
                      +.|++..+|||||||+|.++..+++++|+++ ++++|+|.+++.+++.+||+++.+|||+++|.+|+|++++
T Consensus       197 ~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p~~D~v~~~~  267 (364)
T 3p9c_A          197 HGFEGLGTLVDVGGGVGATVAAIAAHYPTIK-GVNFDLPHVISEAPQFPGVTHVGGDMFKEVPSGDTILMKW  267 (364)
T ss_dssp             CTTTTCSEEEEETCTTSHHHHHHHHHCTTCE-EEEEECHHHHTTCCCCTTEEEEECCTTTCCCCCSEEEEES
T ss_pred             ccccCCCEEEEeCCCCCHHHHHHHHHCCCCe-EEEecCHHHHHhhhhcCCeEEEeCCcCCCCCCCCEEEehH
Confidence            6588889999999999999999999999999 9999999999999999999999999999999889999864

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=100.00  E-value=1.3e-33  Score=235.39  Aligned_cols=189  Identities=22%  Similarity=0.297  Sum_probs=170.4

Q ss_pred             cchhccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC----------------------CCChHHHHHH
Q 037818            4 NECREGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG----------------------GLSYAPYMLQ   61 (199)
Q Consensus         4 ~~A~~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g----------------------~~~~~~~~~~   61 (199)
                      ++|+++|||+.|.++|.|++|||+++|+  +++  .++||||+|++.|                      +.++++++.+
T Consensus        40 ~~a~~lglf~~l~~g~~t~~elA~~~g~--~~~--~l~rlLr~l~~~g~l~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~  115 (348)
T 3lst_A           40 RAAAAVGVADHLVDGPRTPAELAAATGT--DAD--ALRRVLRLLAVRDVVRESDGRFALTDKGAALRSDSPVPARAGILM  115 (348)
T ss_dssp             HHHHHHTGGGGGTTSCBCHHHHHHHHTC--CHH--HHHHHHHHHHHTTSEEEETTEEEECTTTGGGSTTSSSCSHHHHHH
T ss_pred             HHHHHcCchhHhhCCCCCHHHHHHHhCc--CHH--HHHHHHHHHHhCCCEEecCCEEecCHHHHHHhcCCCccHHHHHHH
Confidence            4789999999999999999999999999  777  9999999999999                      2357777777


Q ss_pred             hcChhhHhhhhhHHHHhhCCCCChhhhhhCCCcccccccCchhHHHHHHHHhccchhhHHHHhhhCCCCCCcceEEEecC
Q 037818           62 HHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGG  141 (199)
Q Consensus        62 ~~~~~~~~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGG  141 (199)
                      +.++.+++.|.+|++++|+|+ ++|...+|.++|+|+.++|+..+.|+++|...+....+.+++.++ |++..+||||||
T Consensus       116 ~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~vLDvG~  193 (348)
T 3lst_A          116 FTDTMFWTMSHRVASALGPER-PAFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAEHLILARAGD-FPATGTVADVGG  193 (348)
T ss_dssp             HTSHHHHHHHHTHHHHTCTTC-CCHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHTTHHHHHHHSC-CCSSEEEEEETC
T ss_pred             hcCHHHHHHHHHHHHHHhcCC-ChhhHHhCCCHHHHHHhCHHHHHHHHHHHHHhhhhhHHHHHHhCC-ccCCceEEEECC
Confidence            667768899999999999998 889999999999999999999999999999998888889999999 999999999999


Q ss_pred             CccHHHHHHHHHCCCCCeeeeccchHHHhcCCC-----CCCceEEeCCCCCCCCcccEEEecC
Q 037818          142 SAGDCLRMILQKHRFICEGINFDLPEVVGEAPS-----ILGVTHIGGDTFKSIPAADAIFMKW  199 (199)
Q Consensus       142 G~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~-----~~ri~~~~gd~f~~~P~aD~~~l~~  199 (199)
                      |+|.++..+++++|+++ ++++|+|+++...+.     .+||+++.+|+++++|..|+|++++
T Consensus       194 G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~p~~D~v~~~~  255 (348)
T 3lst_A          194 GRGGFLLTVLREHPGLQ-GVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPHADVHVLKR  255 (348)
T ss_dssp             TTSHHHHHHHHHCTTEE-EEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTCCCCCSEEEEES
T ss_pred             ccCHHHHHHHHHCCCCE-EEEecCHHHhhcccccccCCCCCeEEEecCCCCCCCCCcEEEEeh
Confidence            99999999999999999 999999999883322     2789999999998899669999864

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=100.00  E-value=1.3e-33  Score=237.28  Aligned_cols=192  Identities=36%  Similarity=0.651  Sum_probs=169.8

Q ss_pred             cchhccccccccCC--C---CCCHHHHHHHcC-CCCCCC-cchHHHHHHHHhhCC----C--------------------
Q 037818            4 NECREGGKKVRLAN--T---PLSASQILTRIL-PSGDGD-AENLQRILRLLTSYG----G--------------------   52 (199)
Q Consensus         4 ~~A~~lglf~~L~~--g---~~t~~eLA~~~~-~~~~~~-~~~l~rlL~~l~~~g----~--------------------   52 (199)
                      ++|+++|||+.|.+  |   |+|++|||+++| .  +|+ +..++||||+|++.|    .                    
T Consensus        39 ~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~--~~~~~~~l~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~  116 (368)
T 3reo_A           39 KAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTT--NPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCK  116 (368)
T ss_dssp             HHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCC--CTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTHH
T ss_pred             HHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcC--CCcchhhHHHHHHHHHhCCCeEEecccCCCCcccceeCcCHHHH
Confidence            57999999999976  4   599999999998 4  443 238999999999976    1                    


Q ss_pred             --------CChHHHHHHhcChhhHhhhhhHHHHhhCCCCChhhhhhCCCcccccccCchhHHHHHHHHhccchhhHHHHh
Q 037818           53 --------LSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVL  124 (199)
Q Consensus        53 --------~~~~~~~~~~~~~~~~~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~  124 (199)
                              .++++++.+..++.++..|.+|.+++|+|+ ++|+..+|.++|+|+..+|+..+.|+++|..++....+.++
T Consensus       117 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~  195 (368)
T 3reo_A          117 FLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGG-IPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKIL  195 (368)
T ss_dssp             HHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCS-CHHHHHSSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCC-CHHHHHhCCCHHHHHhhCHHHHHHHHHHHHhhhhhHHHHHH
Confidence                    134566666566778899999999999998 89999999999999999999999999999998888788889


Q ss_pred             hhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCCCCceEEeCCCCCCCCcccEEEecC
Q 037818          125 DGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW  199 (199)
Q Consensus       125 ~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~~ri~~~~gd~f~~~P~aD~~~l~~  199 (199)
                      +.++.|++..+|||||||+|.++..+++++|+++ ++++|+|.+++.+++.+||+++.||||+++|.+|+|++++
T Consensus       196 ~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~  269 (368)
T 3reo_A          196 EMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSIN-AINFDLPHVIQDAPAFSGVEHLGGDMFDGVPKGDAIFIKW  269 (368)
T ss_dssp             TTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCE-EEEEECHHHHTTCCCCTTEEEEECCTTTCCCCCSEEEEES
T ss_pred             HhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCE-EEEEehHHHHHhhhhcCCCEEEecCCCCCCCCCCEEEEec
Confidence            9886588889999999999999999999999999 9999999999999999999999999999999889999864

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=100.00  E-value=9.2e-34  Score=234.62  Aligned_cols=189  Identities=19%  Similarity=0.223  Sum_probs=168.2

Q ss_pred             cchhccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC-----------------------CCChHHHHH
Q 037818            4 NECREGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG-----------------------GLSYAPYML   60 (199)
Q Consensus         4 ~~A~~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g-----------------------~~~~~~~~~   60 (199)
                      ++|+++|||+.|.+||.|++|||+++|+  +++  .++||||+|++.|                       +.++++++.
T Consensus        23 ~~a~~lglf~~l~~g~~t~~elA~~~~~--~~~--~l~rlLr~l~~~gl~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~   98 (332)
T 3i53_A           23 RVAATLRVADHIAAGHRTAAEIASAAGA--HAD--SLDRLLRHLVAVGLFTRDGQGVYGLTEFGEQLRDDHAAGKRKWLD   98 (332)
T ss_dssp             HHHHHHTHHHHHHTTCCBHHHHHHHHTC--CHH--HHHHHHHHHHHTTSEEECTTSBEEECTTGGGGSTTCTTCCHHHHC
T ss_pred             HHHHHcChHHHHhcCCCCHHHHHHHHCc--CHH--HHHHHHHHHHhCCcEEecCCCeEEcCHhHHHHhcCCchhHHHHHH
Confidence            4789999999999899999999999999  777  9999999999999                       124566665


Q ss_pred             HhcChhhH-hhhhhHHHHhhCCCCChhhhhhCCCcccccccCchhHHHHHHHHhccchhhHHHHhhhCCCCCCcceEEEe
Q 037818           61 QHHQDALM-SAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDV  139 (199)
Q Consensus        61 ~~~~~~~~-~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDv  139 (199)
                      +..++..+ +.|.+|++++++|+ ++|...+|.++|+++.++|+..+.|+++|...+....+.+++.++ |++..+||||
T Consensus        99 ~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~~vlDv  176 (332)
T 3i53_A           99 MNSAVGRGDLGFVELAHSIRTGQ-PAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKYD-WAALGHVVDV  176 (332)
T ss_dssp             TTSHHHHHGGGGGGHHHHHHHSS-CSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHTTGGGSSC-CGGGSEEEEE
T ss_pred             HcCCHhHHHHHHHHhHHHHhcCC-CHHHHhhCCCHHHHHHhCHHHHHHHHHHHHHhHHhhHHHHHHhCC-CCCCCEEEEe
Confidence            54444456 88999999999998 889988998999999999999999999999888777778889998 9989999999


Q ss_pred             cCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCC-------CCCceEEeCCCCCCCCc-ccEEEecC
Q 037818          140 GGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPS-------ILGVTHIGGDTFKSIPA-ADAIFMKW  199 (199)
Q Consensus       140 GGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~-------~~ri~~~~gd~f~~~P~-aD~~~l~~  199 (199)
                      |||+|.++..+++++|+++ ++++|+|.+++.+++       .+||+++.+|+++++|. .|+|++++
T Consensus       177 G~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~D~v~~~~  243 (332)
T 3i53_A          177 GGGSGGLLSALLTAHEDLS-GTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSA  243 (332)
T ss_dssp             TCTTSHHHHHHHHHCTTCE-EEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSCSEEEEES
T ss_pred             CCChhHHHHHHHHHCCCCe-EEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCCcEEEEeh
Confidence            9999999999999999999 999999999998874       27999999999998995 69999864

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=100.00  E-value=5.8e-33  Score=233.22  Aligned_cols=189  Identities=25%  Similarity=0.341  Sum_probs=169.3

Q ss_pred             cchhccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC------CC------------------ChHHHH
Q 037818            4 NECREGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG------GL------------------SYAPYM   59 (199)
Q Consensus         4 ~~A~~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g------~~------------------~~~~~~   59 (199)
                      .+|+++|||+.|.++|+|++|||+++|+  +++  .++||||+|++.|      +.                  ++++++
T Consensus        56 ~~a~~lglf~~l~~g~~t~~eLA~~~g~--~~~--~l~rlLr~L~~~g~l~~~~~~~~y~~t~~s~~L~~~~~~~~~~~~  131 (369)
T 3gwz_A           56 HVAVELGVPELLQEGPRTATALAEATGA--HEQ--TLRRLLRLLATVGVFDDLGHDDLFAQNALSAVLLPDPASPVATDA  131 (369)
T ss_dssp             HHHHHHTTGGGGTTSCEEHHHHHHHHTC--CHH--HHHHHHHHHHHTTSSEECSSTTEEECCHHHHTTSCCTTCHHHHHH
T ss_pred             HHHHHCChhhhhcCCCCCHHHHHHHHCc--CHH--HHHHHHHHHHhCCCEEEeCCCceEecCHHHHHHhcCCchhHHHHH
Confidence            4789999999999999999999999999  777  9999999999999      11                  244555


Q ss_pred             HHhcChhhHhhhhhHHHHhhCCCCChhhhhhCCCcccccccCchhHHHHHHHHhccchhhHHHHhhhCCCCCCcceEEEe
Q 037818           60 LQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDV  139 (199)
Q Consensus        60 ~~~~~~~~~~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDv  139 (199)
                      .++.++..++.|.+|.+++++|+ ++|...+|.++|+|+.++|+..+.|+++|...+....+.+++.++ |++..+||||
T Consensus       132 ~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~-~~~~~~vlDv  209 (369)
T 3gwz_A          132 RFQAAPWHWRAWEQLTHSVRTGE-ASFDVANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAYD-FSGAATAVDI  209 (369)
T ss_dssp             HHHHSHHHHHHHHTHHHHHHHSS-CSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CTTCSEEEEE
T ss_pred             HHcCCHHHHHHHHhHHHHHhCCC-ChhHhhcCCCHHHHHHhCHHHHHHHHHHHHHHHhhhHHHHHHhCC-CccCcEEEEe
Confidence            55555557789999999999998 889988998999999999999999999999988888889999998 9999999999


Q ss_pred             cCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCC-------CCCceEEeCCCCCCCCc-ccEEEecC
Q 037818          140 GGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPS-------ILGVTHIGGDTFKSIPA-ADAIFMKW  199 (199)
Q Consensus       140 GGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~-------~~ri~~~~gd~f~~~P~-aD~~~l~~  199 (199)
                      |||+|.++..+++++|+++ ++++|+|.+++.+++       .+||+++.+|+++++|. .|+|++++
T Consensus       210 G~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~~~D~v~~~~  276 (369)
T 3gwz_A          210 GGGRGSLMAAVLDAFPGLR-GTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIKH  276 (369)
T ss_dssp             TCTTSHHHHHHHHHCTTCE-EEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCSSCSEEEEES
T ss_pred             CCCccHHHHHHHHHCCCCe-EEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCCCCCCCceEEEhhh
Confidence            9999999999999999999 999999999998875       37899999999998996 69999864

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.97  E-value=2.8e-31  Score=221.98  Aligned_cols=191  Identities=28%  Similarity=0.450  Sum_probs=166.3

Q ss_pred             cchhccccccccCC--CCCCHHHHHHHcCCCCCCC-cchHHHHHHHHhhCC----C-----C------------------
Q 037818            4 NECREGGKKVRLAN--TPLSASQILTRILPSGDGD-AENLQRILRLLTSYG----G-----L------------------   53 (199)
Q Consensus         4 ~~A~~lglf~~L~~--g~~t~~eLA~~~~~~~~~~-~~~l~rlL~~l~~~g----~-----~------------------   53 (199)
                      ++|+++|||+.|.+  +|.|++|||+++|+  +|. ...++|+||+|++.|    .     .                  
T Consensus        28 ~~a~~lgif~~L~~~~~~~t~~eLA~~~g~--~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~g~~~~~y~~t~~s~~l  105 (358)
T 1zg3_A           28 KSAMELGIADAIHNHGKPMTLSELASSLKL--HPSKVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLL  105 (358)
T ss_dssp             HHHHHHTHHHHHHHHTSCEEHHHHHHHTTC--CTTTHHHHHHHHHHHHHTTSEEEEEECCSSSSCCCEEEEEECHHHHTT
T ss_pred             HHHHHCChHhHHhhcCCCcCHHHHHHhcCC--CCcchHHHHHHHHHHhhCCcEEEecccccccCCCCCCEEeCCHHHHHH
Confidence            46899999999985  49999999999999  543 358999999999888    3     1                  


Q ss_pred             ------ChHHHHHHhcChhhHhhhhhHHHHhhCCC-CChhhhhhCCCcccccccCchhHH--HHHHHHhccchhhHHHHh
Q 037818           54 ------SYAPYMLQHHQDALMSAWPLVHEAVLDPT-IEPFVKVHGEPAYSYYGKMPEMNG--LMRKAMSGVSVPFITSVL  124 (199)
Q Consensus        54 ------~~~~~~~~~~~~~~~~~~~~L~~~lr~g~-~~~~~~~~g~~~~e~~~~~~~~~~--~f~~~m~~~~~~~~~~~~  124 (199)
                            ++++++.+..++.+++.|.+|++++|+|+ .++|+..+|.++|+++.++|+..+  .|+++|...+.... .++
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~p~~~~~~~f~~~m~~~~~~~~-~~~  184 (358)
T 1zg3_A          106 ISGKPTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFK-LVL  184 (358)
T ss_dssp             CTTSTTCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSGGGHHHHHHHHHHHHHHHHTHH-HHH
T ss_pred             hCCCCccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcChhhhhHHHHHHHHhcccHHHH-HHH
Confidence                  23455555556677899999999999983 288998899999999999999999  99999998877666 788


Q ss_pred             hhC--CCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCCCCceEEeCCCCCCCCcccEEEecC
Q 037818          125 DGY--NGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW  199 (199)
Q Consensus       125 ~~~--~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~~ri~~~~gd~f~~~P~aD~~~l~~  199 (199)
                      +.+  + |++..+|||||||+|.++..+++++|+++ ++++|+|.+++.+++.++|+++.+|+++++|.+|+|++++
T Consensus       185 ~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~  259 (358)
T 1zg3_A          185 QENKRV-FEGLESLVDVGGGTGGVTKLIHEIFPHLK-CTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKW  259 (358)
T ss_dssp             HHTHHH-HHTCSEEEEETCTTSHHHHHHHHHCTTSE-EEEEECHHHHSSCCCCSSEEEEECCTTTCCCCCSEEEEES
T ss_pred             Hhcchh-ccCCCEEEEECCCcCHHHHHHHHHCCCCe-EEEeccHHHHhhcccCCCcEEEeCccCCCCCCceEEEEcc
Confidence            888  5 78889999999999999999999999999 9999999999999988889999999999888889999864

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.97  E-value=1.9e-31  Score=220.62  Aligned_cols=186  Identities=25%  Similarity=0.373  Sum_probs=165.6

Q ss_pred             cchhccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC----------------------CCChHHHHHH
Q 037818            4 NECREGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG----------------------GLSYAPYMLQ   61 (199)
Q Consensus         4 ~~A~~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g----------------------~~~~~~~~~~   61 (199)
                      ++|+++|||+.|.++|.|++|||+++|+  +++  .++|+||+|++.|                      +.++++++.+
T Consensus        26 ~~~~~lgi~~~l~~~~~t~~ela~~~~~--~~~--~l~r~Lr~L~~~g~l~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~  101 (334)
T 2ip2_A           26 YVATRLGLADLIESGIDSDETLAAAVGS--DAE--RIHRLMRLLVAFEIFQGDTRDGYANTPTSHLLRDVEGSFRDMVLF  101 (334)
T ss_dssp             HHHHHTTHHHHHHTTCCSHHHHHHHHTC--CHH--HHHHHHHHHHHTTSEEEETTTEEEECHHHHTTSSSTTCSHHHHHH
T ss_pred             HHHHHcCcHHHHhCCCCCHHHHHHHhCc--CHH--HHHHHHHHHHhCCceEecCCCeEecCHHHHHHhCCCccHHHHHHH
Confidence            4689999999998899999999999999  776  9999999999999                      1145666666


Q ss_pred             hcChhhHhhhhhHHHHhhCCCCChhhhhhCCCcccccccCchhHHHHHHHHhccchhhHHHHhhhCCCCCCcceEEEecC
Q 037818           62 HHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGG  141 (199)
Q Consensus        62 ~~~~~~~~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGG  141 (199)
                      ..++.. +.|.+|++++++|+ ++|+..+|.++|+++.++|+..+.|+++| ..+....+.+++.++ |++ .+||||||
T Consensus       102 ~~~~~~-~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m-~~~~~~~~~~~~~~~-~~~-~~vlDvG~  176 (334)
T 2ip2_A          102 YGEEFH-AAWTPACEALLSGT-PGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASNLAFHEIPRLLD-FRG-RSFVDVGG  176 (334)
T ss_dssp             HTTHHH-HHTTTHHHHHHHCC-CHHHHHHSSCHHHHHHHCHHHHHHHHHHH-GGGHHHHHHHHHHSC-CTT-CEEEEETC
T ss_pred             hcCchh-hHHHHHHHHHhcCC-ChhhhhcCCCHHHHHhhChHHHHHHHHHH-HHHHHHHHHHHHhCC-CCC-CEEEEeCC
Confidence            555444 88999999999998 89988899999999999999999999999 888777888999998 988 99999999


Q ss_pred             CccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC-------CCceEEeCCCCCCCCc-ccEEEecC
Q 037818          142 SAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI-------LGVTHIGGDTFKSIPA-ADAIFMKW  199 (199)
Q Consensus       142 G~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~-------~ri~~~~gd~f~~~P~-aD~~~l~~  199 (199)
                      |+|.++..+++++|+++ ++++|+|.+++.+++.       +||+++.+|+++++|. .|+|++++
T Consensus       177 G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~  241 (334)
T 2ip2_A          177 GSGELTKAILQAEPSAR-GVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLLSR  241 (334)
T ss_dssp             TTCHHHHHHHHHCTTCE-EEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTCCCSSCSEEEEES
T ss_pred             CchHHHHHHHHHCCCCE-EEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCCCCCEEEEch
Confidence            99999999999999999 9999999999888752       6899999999998887 49999864

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.97  E-value=3.5e-31  Score=220.90  Aligned_cols=190  Identities=27%  Similarity=0.397  Sum_probs=167.6

Q ss_pred             cchhccccccccCC--CCCCHHHHHHHcCCCCCCC-cchHHHHHHHHhhCC----C---------------------CCh
Q 037818            4 NECREGGKKVRLAN--TPLSASQILTRILPSGDGD-AENLQRILRLLTSYG----G---------------------LSY   55 (199)
Q Consensus         4 ~~A~~lglf~~L~~--g~~t~~eLA~~~~~~~~~~-~~~l~rlL~~l~~~g----~---------------------~~~   55 (199)
                      ++|+++|||+.|.+  +|.|++|||+++|+  +|. ...++|+||+|++.|    .                     .++
T Consensus        34 ~~a~~lgif~~L~~~~~~~t~~ela~~~~~--~~~~~~~l~rlLr~L~~~gll~~~~~~~~~y~~t~~s~~L~~~~~~~~  111 (352)
T 1fp2_A           34 KWAVEMNIPNIIQNHGKPISLSNLVSILQV--PSSKIGNVRRLMRYLAHNGFFEIITKEEESYALTVASELLVRGSDLCL  111 (352)
T ss_dssp             HHHHHTTHHHHHHHHTSCEEHHHHHHHHTC--CGGGHHHHHHHHHHHHHTTSEEEEESSSEEEEECHHHHTTSTTSSSCC
T ss_pred             HHHHHCChhhhhhhcCCCccHHHHHHHhCc--CCCChHHHHHHHHHHHhCCeEEEecCCCCeEeCCHHHHHHhCCCCccH
Confidence            46899999999985  59999999999999  633 348999999999988    2                     135


Q ss_pred             HHHHHHhcChhhHhhhhhHHHHhh-CCCCChhhhhhCCCcccccccCchhHHHHHHHHhccchhhHHHHhhhC--CCCCC
Q 037818           56 APYMLQHHQDALMSAWPLVHEAVL-DPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGY--NGFKG  132 (199)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~L~~~lr-~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~--~~~~~  132 (199)
                      ++++.+..++.+++.|.+|++++| +|+ ++|...+|.++|+++.++|+..+.|+++|...+....+. ++.+  + |++
T Consensus       112 ~~~~~~~~~~~~~~~~~~L~~~l~~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~-~~~~~~~-~~~  188 (352)
T 1fp2_A          112 APMVECVLDPTLSGSYHELKKWIYEEDL-TLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLA-LRDCDFV-FDG  188 (352)
T ss_dssp             HHHHHHHTCHHHHHGGGGHHHHHTCSSC-CHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHH-HHTCHHH-HTT
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHhcCC-ChHHHHcCCCHHHHHHhChHHHHHHHHHHHhcchhhhhH-HHhcccc-ccc
Confidence            667666666777889999999999 787 899988999999999999999999999999888776666 7778  5 888


Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCCCCceEEeCCCCCCCCcccEEEecC
Q 037818          133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW  199 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~~ri~~~~gd~f~~~P~aD~~~l~~  199 (199)
                      ..+|||||||+|.++..+++++|+++ ++++|+|.+++.+++.++|+++.+|+++++|..|+|++++
T Consensus       189 ~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~  254 (352)
T 1fp2_A          189 LESIVDVGGGTGTTAKIICETFPKLK-CIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKY  254 (352)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCE-EEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEES
T ss_pred             CceEEEeCCCccHHHHHHHHHCCCCe-EEEeeCHHHHhhcccCCCcEEEeccccCCCCCccEEEeeh
Confidence            89999999999999999999999999 9999999999999988889999999999888889999864

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.97  E-value=1.8e-30  Score=218.22  Aligned_cols=193  Identities=37%  Similarity=0.627  Sum_probs=155.5

Q ss_pred             cchhccccccccCC-C-C---CCHHHHHHHcCC---CCCCCcchHHHHHHHHhhCC----C-------------------
Q 037818            4 NECREGGKKVRLAN-T-P---LSASQILTRILP---SGDGDAENLQRILRLLTSYG----G-------------------   52 (199)
Q Consensus         4 ~~A~~lglf~~L~~-g-~---~t~~eLA~~~~~---~~~~~~~~l~rlL~~l~~~g----~-------------------   52 (199)
                      ++|+++|||+.|.+ | |   +|++|||+++|+   +. .++..++|+||+|++.|    .                   
T Consensus        42 ~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~-~~~~~l~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s  120 (372)
T 1fp1_D           42 NAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHS-DLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVG  120 (372)
T ss_dssp             HHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCT-THHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTG
T ss_pred             HHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCC-cChHHHHHHHHHHhhCCceEecccccCCCCcCCeEecCHHH
Confidence            46899999999986 5 7   999999999998   21 12348999999999887    3                   


Q ss_pred             ---------CChHHHHHHhcChhhHhhhhhHHHHhhCC-CCChhhhhhCCCcccccccCchhHHHHHHHHhccchhhHHH
Q 037818           53 ---------LSYAPYMLQHHQDALMSAWPLVHEAVLDP-TIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITS  122 (199)
Q Consensus        53 ---------~~~~~~~~~~~~~~~~~~~~~L~~~lr~g-~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~~~~~~~~~~  122 (199)
                               .++++++.+..++.+++.|.+|++++|+| + ++|+..+|.++|+++.++|+..+.|+++|...+....+.
T Consensus       121 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~  199 (372)
T 1fp1_D          121 KYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDI-DLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKR  199 (372)
T ss_dssp             GGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC---------------CCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCC-ChhHHHhCCCHHHHHHhCHHHHHHHHHHHHhhhHHHHHH
Confidence                     12445666555667788999999999998 6 889888898999999999999999999999888877788


Q ss_pred             HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCCCCceEEeCCCCCCCCcccEEEecC
Q 037818          123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW  199 (199)
Q Consensus       123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~~ri~~~~gd~f~~~P~aD~~~l~~  199 (199)
                      +++.++.|++..+|||||||+|.++..+++++|+++ ++++|+|.+++.+++.++|+++.+|+++++|.+|+|++++
T Consensus       200 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~-~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~  275 (372)
T 1fp1_D          200 MLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIK-GINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKA  275 (372)
T ss_dssp             HHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCE-EEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEES
T ss_pred             HHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCe-EEEeChHHHHHhhhhcCCCEEEeCCcccCCCCCCEEEEec
Confidence            888885588889999999999999999999999999 9999999999999988899999999999888889999864

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.96  E-value=1.6e-29  Score=211.96  Aligned_cols=189  Identities=19%  Similarity=0.218  Sum_probs=164.2

Q ss_pred             cchhccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC------CC-------------------ChHHH
Q 037818            4 NECREGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG------GL-------------------SYAPY   58 (199)
Q Consensus         4 ~~A~~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g------~~-------------------~~~~~   58 (199)
                      ++|+++|||+.|.++|.|++|||+++|+  +++  .+.|+||+|++.|      +.                   +++++
T Consensus        34 ~~~~~l~i~~~l~~~~~t~~eLA~~~g~--~~~--~l~r~Lr~L~~~Gll~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~  109 (374)
T 1qzz_A           34 RVAATLRLVDHLLAGADTLAGLADRTDT--HPQ--ALSRLVRHLTVVGVLEGGEKQGRPLRPTRLGMLLADGHPAQQRAW  109 (374)
T ss_dssp             HHHHHTTHHHHHHTTCCSHHHHHHHHTC--CHH--HHHHHHHHHHHTTSEECCCC-CCCCEECTTGGGGSTTCTTCHHHH
T ss_pred             HHHHHcChHHHHhCCCCCHHHHHHHhCc--CHH--HHHHHHHHHhhCCCEEEeCCCCeEEEEChHHHhhcCCCcccHHHH
Confidence            4688999999998899999999999999  776  9999999999999      12                   23344


Q ss_pred             HHHhcChhhH-hhhhhHHHHhhCCCCChhhhhhCCCcccccccCchhHHHHHHHHhccchhhHHHHhhhCCCCCCcceEE
Q 037818           59 MLQHHQDALM-SAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLV  137 (199)
Q Consensus        59 ~~~~~~~~~~-~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vv  137 (199)
                      +.+..++..+ ..|.+|.+++++|+ ++|...+|.++|+++..+|+..+.|+++|........+.+++.++ +.+..+||
T Consensus       110 ~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~vl  187 (374)
T 1qzz_A          110 LDLNGAVSHADLAFTGLLDVVRTGR-PAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WSAVRHVL  187 (374)
T ss_dssp             HCTTSHHHHHHGGGGGHHHHHHHSC-CSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC-CTTCCEEE
T ss_pred             HHHcCChhhHHHHHHHHHHHHhcCC-ChhhhhhCCCHHHHHhhChHHHHHHHHHHHHhhHhHHHHHHHhCC-CCCCCEEE
Confidence            4333333456 88999999999998 889888999999999999999999999999888777788999998 88889999


Q ss_pred             EecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC-------CCceEEeCCCCCCCCc-ccEEEecC
Q 037818          138 DVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI-------LGVTHIGGDTFKSIPA-ADAIFMKW  199 (199)
Q Consensus       138 DvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~-------~ri~~~~gd~f~~~P~-aD~~~l~~  199 (199)
                      |||||+|.++..+++++|+++ ++++|+|.+++.+++.       +||+++.+|+++++|. .|+|++++
T Consensus       188 DvG~G~G~~~~~l~~~~~~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~  256 (374)
T 1qzz_A          188 DVGGGNGGMLAAIALRAPHLR-GTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSF  256 (374)
T ss_dssp             EETCTTSHHHHHHHHHCTTCE-EEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEES
T ss_pred             EECCCcCHHHHHHHHHCCCCE-EEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCCCCCEEEEec
Confidence            999999999999999999999 9999999999988752       5899999999998888 59999864

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.96  E-value=8.1e-30  Score=213.66  Aligned_cols=186  Identities=20%  Similarity=0.182  Sum_probs=150.2

Q ss_pred             cchhccccccccCC--CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC-----CCCh--------------HHHHHHh
Q 037818            4 NECREGGKKVRLAN--TPLSASQILTRILPSGDGDAENLQRILRLLTSYG-----GLSY--------------APYMLQH   62 (199)
Q Consensus         4 ~~A~~lglf~~L~~--g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g-----~~~~--------------~~~~~~~   62 (199)
                      ++|+++|||+.|.+  +|+|++|||+++|+  +++  .++||||+|++.|     +..+              ......+
T Consensus        33 ~~a~~lgifd~L~~~~~~~t~~eLA~~~g~--~~~--~l~rlLr~l~~~g~l~~~~~~y~~t~~s~~L~~~~~~~~~~~~  108 (363)
T 3dp7_A           33 RLMLKFGIFQLLSGKREGYTLQEISGRTGL--TRY--AAQVLLEASLTIGTILLEEDRYVLAKAGWFLLNDKMARVNMEF  108 (363)
T ss_dssp             HHHHHTTHHHHHHTCTTCBCHHHHHHHHTC--CHH--HHHHHHHHHHHHTSEEEETTEEEECHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHhcCCCCCHHHHHHHhCc--CHH--HHHHHHHHHhhCCCeEecCCEEecccchHHhhCCCcccchhee
Confidence            46899999999987  89999999999999  777  9999999999999     1111              0111222


Q ss_pred             cChhhHhhhhhHHHHhhCCCCChhhhhhC--CCcccccccCchhHH----HHHHHHhccchhhHHHHhhhCCCCCCcceE
Q 037818           63 HQDALMSAWPLVHEAVLDPTIEPFVKVHG--EPAYSYYGKMPEMNG----LMRKAMSGVSVPFITSVLDGYNGFKGVKQL  136 (199)
Q Consensus        63 ~~~~~~~~~~~L~~~lr~g~~~~~~~~~g--~~~~e~~~~~~~~~~----~f~~~m~~~~~~~~~~~~~~~~~~~~~~~v  136 (199)
                      ..+..+++|.+|++++|+|+ +++...+|  .++|+++.++|+..+    .|+.+|.....   ..++..+. ..+..+|
T Consensus       109 ~~~~~~~~~~~L~~~lr~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~---~~~l~~~~-~~~~~~v  183 (363)
T 3dp7_A          109 NHDVNYQGLFHLEEALLNGR-PEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQSF---GKALEIVF-SHHPKRL  183 (363)
T ss_dssp             HHHTTHHHHTTHHHHHHHSS-CGGGGGTCCCSSHHHHGGGSCHHHHHHHHHHHHHTTCCCC---HHHHHHHG-GGCCSEE
T ss_pred             ecHHhhhhHHHHHHHHhcCC-CccccccCchHhHHHHHhhCHHHHHHHHHHHHHHhhhhhH---HHHHHHhc-ccCCCEE
Confidence            34557889999999999998 77877888  689999999998776    37777765432   23444443 4677899


Q ss_pred             EEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC-------CCceEEeCCCCCC---CCc-ccEEEecC
Q 037818          137 VDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI-------LGVTHIGGDTFKS---IPA-ADAIFMKW  199 (199)
Q Consensus       137 vDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~-------~ri~~~~gd~f~~---~P~-aD~~~l~~  199 (199)
                      ||||||+|.++..+++++|+++ ++++|+|.+++.+++.       +||+++.+|++++   +|. .|+|++++
T Consensus       184 lDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~  256 (363)
T 3dp7_A          184 LDIGGNTGKWATQCVQYNKEVE-VTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQ  256 (363)
T ss_dssp             EEESCTTCHHHHHHHHHSTTCE-EEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEES
T ss_pred             EEeCCCcCHHHHHHHHhCCCCE-EEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEec
Confidence            9999999999999999999999 9999999999988752       6899999999984   675 59999864

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.96  E-value=3.9e-29  Score=208.72  Aligned_cols=189  Identities=17%  Similarity=0.271  Sum_probs=164.5

Q ss_pred             cchhccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC-----------------------CCChHHHHH
Q 037818            4 NECREGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG-----------------------GLSYAPYML   60 (199)
Q Consensus         4 ~~A~~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g-----------------------~~~~~~~~~   60 (199)
                      +.++++|||+.|.++|.|++|||+++|+  ++.  .+.|+|++|++.|                       +.++++++.
T Consensus        37 ~~~~~l~i~~~l~~~~~t~~ela~~~~~--~~~--~l~r~L~~L~~~g~~~~~~~g~y~~t~~s~~l~~~~~~~~~~~~~  112 (360)
T 1tw3_A           37 RTAATLRLVDHILAGARTVKALAARTDT--RPE--ALLRLIRHLVAIGLLEEDAPGEFVPTEVGELLADDHPAAQRAWHD  112 (360)
T ss_dssp             HHHHHTTHHHHHHTTCCBHHHHHHHHTC--CHH--HHHHHHHHHHHTTSEEEEETTEEEECTTGGGGSTTSTTCHHHHTC
T ss_pred             HHHHHhCHHHHHhCCCCCHHHHHHHhCc--CHH--HHHHHHHHHHHCCCEEecCCCeEEeCHHHHHHhcCCchhHHHHHH
Confidence            4688999999998899999999999999  776  9999999999999                       123445544


Q ss_pred             HhcChh-hHhhhhhHHHHhhCCCCChhhhhhCCCcccccccCchhHHHHHHHHhccchhhHHHHhhhCCCCCCcceEEEe
Q 037818           61 QHHQDA-LMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDV  139 (199)
Q Consensus        61 ~~~~~~-~~~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDv  139 (199)
                      +...+. .+..|.+|.+.+++|+ ++|...+|.++|+++..+|+....|..+|...+....+.+++.++ +.+..+||||
T Consensus       113 ~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~p~~~~~f~~~~~~~~~~~~~~l~~~~~-~~~~~~vLDv  190 (360)
T 1tw3_A          113 LTQAVARADISFTRLPDAIRTGR-PTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTNVRHVLDV  190 (360)
T ss_dssp             TTSHHHHHGGGGGGHHHHHHHCC-CCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC-CTTCSEEEEE
T ss_pred             HhcCchhHHHHHHHHHHHHHcCC-CHHHHhcCCCHHHHHHhChHHHHHHHHHHHHHHHHhHHHHHHhCC-CccCcEEEEe
Confidence            433333 5789999999999998 788888899999999999999999999999888877788899998 8888999999


Q ss_pred             cCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC-------CCceEEeCCCCCCCCc-ccEEEecC
Q 037818          140 GGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI-------LGVTHIGGDTFKSIPA-ADAIFMKW  199 (199)
Q Consensus       140 GGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~-------~ri~~~~gd~f~~~P~-aD~~~l~~  199 (199)
                      |||+|.++..+++++|+++ ++.+|+|.+++.++++       +||+++.+|+++++|. .|+|++++
T Consensus       191 G~G~G~~~~~l~~~~~~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~  257 (360)
T 1tw3_A          191 GGGKGGFAAAIARRAPHVS-ATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSF  257 (360)
T ss_dssp             TCTTSHHHHHHHHHCTTCE-EEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEES
T ss_pred             CCcCcHHHHHHHHhCCCCE-EEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCCCccEEEEcc
Confidence            9999999999999999999 9999999999888752       4899999999998888 59998753

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.96  E-value=1.8e-28  Score=204.97  Aligned_cols=178  Identities=19%  Similarity=0.205  Sum_probs=155.3

Q ss_pred             cchhccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC-----------------------C---CChHH
Q 037818            4 NECREGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG-----------------------G---LSYAP   57 (199)
Q Consensus         4 ~~A~~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g-----------------------~---~~~~~   57 (199)
                      ++|+++|||+.|.++|.|++|||+++|+  +++  .++|+||+|++.|                       +   .++++
T Consensus        49 ~~a~~lgif~~L~~~~~t~~eLA~~~g~--~~~--~l~rlLr~L~~~gll~~~~~~y~~t~~~~~~l~~~~~~~~~~~~~  124 (359)
T 1x19_A           49 KAAIELDLFSHMAEGPKDLATLAADTGS--VPP--RLEMLLETLRQMRVINLEDGKWSLTEFADYMFSPTPKEPNLHQTP  124 (359)
T ss_dssp             HHHHHHTHHHHHTTCCBCHHHHHHHHTC--CHH--HHHHHHHHHHHTTSEEEETTEEEECHHHHHHSSSSCSBTTBCCHH
T ss_pred             HHHHHcCcHHHHcCCCCCHHHHHHHhCc--ChH--HHHHHHHHHHhCCCeEeeCCeEecCHHHHHHhcCCCCCccccHHH
Confidence            4689999999999999999999999999  776  9999999999999                       1   23555


Q ss_pred             HHHHhcChhhHhhhhhHHHHhhCCCCChhhhhhCCCcccccccCch---hHHHHHHHHhccch-hhHHHHhhhCCCCCCc
Q 037818           58 YMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPE---MNGLMRKAMSGVSV-PFITSVLDGYNGFKGV  133 (199)
Q Consensus        58 ~~~~~~~~~~~~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~---~~~~f~~~m~~~~~-~~~~~~~~~~~~~~~~  133 (199)
                      ++.+. .+.+++.|.+|++++++|+ +          |+++.++|+   ..+.|..+|...+. ...+.+++.++ +.+.
T Consensus       125 ~~~~~-~~~~~~~~~~L~~~l~~g~-~----------~~~~~~~p~~~~~~~~f~~~m~~~~~~~~~~~l~~~~~-~~~~  191 (359)
T 1x19_A          125 VAKAM-AFLADDFYMGLSQAVRGQK-N----------FKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK-LDGV  191 (359)
T ss_dssp             HHHHH-HHHHHHTGGGHHHHHTTSC-C----------CCCSSCSSCCSHHHHHHHHHHHHTTCHHHHHHHHHHCC-CTTC
T ss_pred             HHHHH-HHHHHHHHHHHHHHHhcCC-C----------CcccccCchhhHHHHHHHHHHHHhccchhHHHHHHhcC-CCCC
Confidence            55543 3567889999999999877 3          778888999   99999999999888 77888999998 9888


Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCC-------CCCceEEeCCCCC-CCCcccEEEecC
Q 037818          134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPS-------ILGVTHIGGDTFK-SIPAADAIFMKW  199 (199)
Q Consensus       134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~-------~~ri~~~~gd~f~-~~P~aD~~~l~~  199 (199)
                      .+|||||||+|.++..+++++|+++ ++++|+|.+++.+++       .+||+++.+|+++ ++|.+|+|++++
T Consensus       192 ~~vLDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~  264 (359)
T 1x19_A          192 KKMIDVGGGIGDISAAMLKHFPELD-STILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCR  264 (359)
T ss_dssp             CEEEEESCTTCHHHHHHHHHCTTCE-EEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCCSEEEEES
T ss_pred             CEEEEECCcccHHHHHHHHHCCCCe-EEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCCCEEEEec
Confidence            9999999999999999999999999 999999999998874       2679999999997 577679999863

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.95  E-value=1.5e-27  Score=197.00  Aligned_cols=183  Identities=13%  Similarity=0.034  Sum_probs=157.3

Q ss_pred             cchhccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC-----------------------CCChHHHHH
Q 037818            4 NECREGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG-----------------------GLSYAPYML   60 (199)
Q Consensus         4 ~~A~~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g-----------------------~~~~~~~~~   60 (199)
                      ++|+++|||+.|.++|.|++|||+++|+  +++  .++|+||+|++.|                       +.++++++.
T Consensus        24 ~~~~~l~i~~~l~~~~~t~~ela~~~~~--~~~--~l~r~L~~L~~~g~l~~~~~~y~~t~~~~~~l~~~~~~~~~~~~~   99 (335)
T 2r3s_A           24 KAAVELNVFTAISQGIESSQSLAQKCQT--SER--GMRMLCDYLVIIGFMTKQAEGYRLTSDSAMFLDRQSKFYVGDAIE   99 (335)
T ss_dssp             HHHHHTTHHHHHTTSEECHHHHHHHHTC--CHH--HHHHHHHHHHHTTSEEEETTEEEECHHHHHHTCTTSTTCCGGGHH
T ss_pred             HHHHHcChHHHHhcCCCCHHHHHHHhCC--Cch--HHHHHHHHHHhcCCeEecCCEEecCHHHHHHhccCCcHHHHHHHH
Confidence            4689999999999999999999999999  776  9999999999999                       122445555


Q ss_pred             HhcChhhHhhhhhHHHHhhCCCCChhhhhhCCCcccccccCchhHHHHHHHHhccchhhHHHHhhhCCCC--CCcceEEE
Q 037818           61 QHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGF--KGVKQLVD  138 (199)
Q Consensus        61 ~~~~~~~~~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~--~~~~~vvD  138 (199)
                      +..++..++.|.+|++++++|+ ++|.     + |+++.++++....|.+.|..........+++.++ +  .+..+|||
T Consensus       100 ~~~~~~~~~~~~~l~~~l~~~~-~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~vlD  171 (335)
T 2r3s_A          100 FLLSPMITNGFNDLTAAVLKGG-TAIS-----S-EGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVN-ENKIEPLKVLD  171 (335)
T ss_dssp             HHTCHHHHGGGTTHHHHHHHTS-CCST-----T-TGGGSTTCTHHHHHHHHSGGGGHHHHHHHHHHHT-C--CCCSEEEE
T ss_pred             HhcchhhHHHHHhHHHHHhcCC-CCCC-----C-cccccCCHHHHHHHHHHHHHHHhhhHHHHHHhcc-cccCCCCEEEE
Confidence            5445467889999999999988 6553     3 8888889999999999999888877788888888 7  88899999


Q ss_pred             ecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC-------CCceEEeCCCCC-CCCc-ccEEEecC
Q 037818          139 VGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI-------LGVTHIGGDTFK-SIPA-ADAIFMKW  199 (199)
Q Consensus       139 vGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~-------~ri~~~~gd~f~-~~P~-aD~~~l~~  199 (199)
                      ||||+|.++..+++++|+.+ ++++|++.+++.+++.       +||+++.+|+++ ++|. .|+|++++
T Consensus       172 vG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~  240 (335)
T 2r3s_A          172 ISASHGLFGIAVAQHNPNAE-IFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPN  240 (335)
T ss_dssp             ETCTTCHHHHHHHHHCTTCE-EEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEES
T ss_pred             ECCCcCHHHHHHHHHCCCCe-EEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcc
Confidence            99999999999999999999 9999999888888753       589999999997 6777 49999864

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.94  E-value=4.1e-27  Score=195.96  Aligned_cols=180  Identities=16%  Similarity=0.209  Sum_probs=146.8

Q ss_pred             cchhccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC-----------------------CCChHHHHH
Q 037818            4 NECREGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG-----------------------GLSYAPYML   60 (199)
Q Consensus         4 ~~A~~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g-----------------------~~~~~~~~~   60 (199)
                      ++|+++|||+.|.+ |.|++|||+++|+  +++  .++||||+|++.|                       +.++.+++.
T Consensus        42 ~~a~~lgif~~l~~-~~t~~elA~~~~~--~~~--~l~rlLr~L~~~gll~~~~~~y~~t~~s~~~l~~~~~~~~~~~~~  116 (352)
T 3mcz_A           42 HYAVADKLFDLTQT-GRTPAEVAASFGM--VEG--KAAILLHALAALGLLTKEGDAFRNTALTERYLTTTSADYIGPIVE  116 (352)
T ss_dssp             HHHHHTTHHHHTTS-CBCHHHHHHHHTC--CHH--HHHHHHHHHHHTTSEEEETTEEEECHHHHHHHSTTCTTCCHHHHH
T ss_pred             HHHHHCChHHHhCC-CCCHHHHHHHhCc--ChH--HHHHHHHHHHHCCCeEecCCeeecCHHHHhhccCCChhhHHHHHH
Confidence            47899999999987 9999999999999  777  9999999999999                       123444443


Q ss_pred             HhcChhhHhhhhhHHHHhhCCCCChhhhhhCCCcccccccCchhHHHHHHHHhccchhhHHHHhhhCCCCCC-cceEEEe
Q 037818           61 QHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKG-VKQLVDV  139 (199)
Q Consensus        61 ~~~~~~~~~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~-~~~vvDv  139 (199)
                      +.  ...++.|.+|++++|+|++.+|...      .++..+|+..+.|..+|...... ...+++.++ +.+ ..+||||
T Consensus       117 ~~--~~~~~~~~~l~~~l~~g~~~~f~~~------~~~~~~~~~~~~f~~~m~~~~~~-~~~~l~~~~-~~~~~~~vlDv  186 (352)
T 3mcz_A          117 HQ--YLQWDNWPRLGEILRSEKPLAFQQE------SRFAHDTRARDAFNDAMVRLSQP-MVDVVSELG-VFARARTVIDL  186 (352)
T ss_dssp             HH--HTTTTTGGGHHHHHTCSSCCTTSHH------HHTTTCHHHHHHHHHHHHHHHHH-HHHHHHTCG-GGTTCCEEEEE
T ss_pred             Hh--HHHHHHHHHHHHHHhCCCCCCcccc------cccccCHHHHHHHHHHHHhhhhh-HHHHHHhCC-CcCCCCEEEEe
Confidence            32  3467899999999999984444332      12357899999999999873322 237888898 877 8999999


Q ss_pred             cCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC-------CCceEEeCCCCCC---CCc-ccEEEecC
Q 037818          140 GGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI-------LGVTHIGGDTFKS---IPA-ADAIFMKW  199 (199)
Q Consensus       140 GGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~-------~ri~~~~gd~f~~---~P~-aD~~~l~~  199 (199)
                      |||+|.++..+++++|+++ ++++|+|.+++.+++.       +||+++.+|+++.   .|. .|+|++++
T Consensus       187 G~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~  256 (352)
T 3mcz_A          187 AGGHGTYLAQVLRRHPQLT-GQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLND  256 (352)
T ss_dssp             TCTTCHHHHHHHHHCTTCE-EEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEES
T ss_pred             CCCcCHHHHHHHHhCCCCe-EEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEec
Confidence            9999999999999999999 9999999998887742       6899999999984   565 49999864

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.00  E-value=3.9e-11  Score=100.47  Aligned_cols=162  Identities=12%  Similarity=0.024  Sum_probs=99.6

Q ss_pred             ccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC----CCChH--H----HHHHhcC--------hh-----
Q 037818           10 GKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG----GLSYA--P----YMLQHHQ--------DA-----   66 (199)
Q Consensus        10 glf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g----~~~~~--~----~~~~~~~--------~~-----   66 (199)
                      |+|..| ++|.|+.|||..+|+  ++.  .++++|+.|++.|    ...++  +    ++.....        ..     
T Consensus        47 ~ll~~L-~~~~t~~eLa~~~g~--~~~--~v~~~L~~l~~~gll~~~~~~~lt~~~~~~l~~~~~~~~~~~~~~~~~g~g  121 (373)
T 2qm3_A           47 NVLSAV-LASDDIWRIVDLSEE--PLP--LVVAILESLNELGYVTFEDGVKLTEKGEELVAEYGIGKRYDFTCPHCQGKT  121 (373)
T ss_dssp             HHHHHH-HHCSCHHHHHHHHTS--CHH--HHHHHHHHHHHTTSEECSSSSEECHHHHHHHHHHTCCCCCC----------
T ss_pred             HHHHHh-cCCCCHHHHHHHhCC--ChH--HHHHHHHHHhhCCcEEECCCEEECHHHHHHHHhcCccccccccchhhcCCC
Confidence            788888 789999999999999  766  9999999999988    21111  1    1111000        00     


Q ss_pred             -hHh----hhhhHHHHhhCCCCChhhhhhCCCcccccccCchhHHHHHHHHhccchhhHHHHhhhCCCCCCcceEEEecC
Q 037818           67 -LMS----AWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGG  141 (199)
Q Consensus        67 -~~~----~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGG  141 (199)
                       .+.    .|..+.+.++... .+.      ..|+.....++..  ....+         ......+ . ...+||||| 
T Consensus       122 ~~~~~~~~~~~~l~~~~~~~~-~~~------~~~~~~~~~~~~~--~~~~l---------~~~~~~~-~-~~~~VLDlG-  180 (373)
T 2qm3_A          122 VDLQAFADLLEQFREIVKDRP-EPL------HEFDQAYVTPETT--VARVI---------LMHTRGD-L-ENKDIFVLG-  180 (373)
T ss_dssp             --CGGGHHHHHHHHHHHTTCC-CCC------GGGTCCCBCHHHH--HHHHH---------HHHHTTC-S-TTCEEEEES-
T ss_pred             cchhhhHHHHHHHHHHHhcCC-ccc------hhcCCeecCHHHH--HHHHH---------HHhhcCC-C-CCCEEEEEC-
Confidence             000    1223333333222 100      0011100111111  11000         0111112 2 347999999 


Q ss_pred             CccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCc-----ccEEEec
Q 037818          142 SAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPA-----ADAIFMK  198 (199)
Q Consensus       142 G~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~-----aD~~~l~  198 (199)
                      |+|.++..+++..|..+ ++.+|+ |..++.++++      +||+++.+|+++++|.     .|+|+++
T Consensus       181 G~G~~~~~la~~~~~~~-v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~  248 (373)
T 2qm3_A          181 DDDLTSIALMLSGLPKR-IAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITD  248 (373)
T ss_dssp             CTTCHHHHHHHHTCCSE-EEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEEC
T ss_pred             CCCHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEEC
Confidence            99999999999999899 999998 8999888763      4899999999986653     3999975

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.68  E-value=9.7e-09  Score=79.12  Aligned_cols=63  Identities=17%  Similarity=0.205  Sum_probs=53.3

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC-CCCc--ccEEEec
Q 037818          133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK-SIPA--ADAIFMK  198 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~-~~P~--aD~~~l~  198 (199)
                      ..+|||||||+|.++..+++..|  + ++.+|. |..++.+++.     ++++++.+|+.+ ++|.  .|++++.
T Consensus        39 ~~~vLDlG~G~G~~~~~l~~~~~--~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  110 (227)
T 1ve3_A           39 RGKVLDLACGVGGFSFLLEDYGF--E-VVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFI  110 (227)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTC--E-EEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEE
T ss_pred             CCeEEEEeccCCHHHHHHHHcCC--E-EEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEc
Confidence            57999999999999999999988  6 889998 7888877653     789999999997 5554  3988864

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=98.66  E-value=6.5e-08  Score=74.99  Aligned_cols=76  Identities=16%  Similarity=0.090  Sum_probs=59.9

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----CCCceEEeCCCCC-CCCc-ccE
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----ILGVTHIGGDTFK-SIPA-ADA  194 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----~~ri~~~~gd~f~-~~P~-aD~  194 (199)
                      .+.+.++......+|||||||+|.++..+++.+|..+ ++.+|. |..++.+++    ..+++++.+|+.+ +.+. .|+
T Consensus        34 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~  112 (234)
T 3dtn_A           34 VSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEAT-FTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDM  112 (234)
T ss_dssp             HHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEE
T ss_pred             HHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceE
Confidence            3444443124558999999999999999999999999 999998 777777654    3589999999997 4544 399


Q ss_pred             EEec
Q 037818          195 IFMK  198 (199)
Q Consensus       195 ~~l~  198 (199)
                      +++.
T Consensus       113 v~~~  116 (234)
T 3dtn_A          113 VVSA  116 (234)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9875

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=98.61  E-value=3.6e-08  Score=78.58  Aligned_cols=67  Identities=21%  Similarity=0.208  Sum_probs=55.7

Q ss_pred             CCcceEEEecCCccHHHHHHHHHC--CCCCeeeeccc-hHHHhcCCC-------CCCceEEeCCCCC-CCCcccEEEec
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKH--RFICEGINFDL-PEVVGEAPS-------ILGVTHIGGDTFK-SIPAADAIFMK  198 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~--P~l~~~~v~Dl-p~v~~~a~~-------~~ri~~~~gd~f~-~~P~aD~~~l~  198 (199)
                      +...+|||||||+|.++..+++++  |+++ ++.+|. |..++.|++       ..+|+++.+|+.+ +++..|++++.
T Consensus        69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~-v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~  146 (261)
T 4gek_A           69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCK-IIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLN  146 (261)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTCCSSSCE-EEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEE
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhcCCCCCE-EEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceee
Confidence            456799999999999999999985  6788 999997 777887764       2689999999987 66667888764

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.56  E-value=2.3e-07  Score=73.43  Aligned_cols=74  Identities=12%  Similarity=0.148  Sum_probs=60.9

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCCCCceEEeCCCCC-CCCc--ccEEE
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSILGVTHIGGDTFK-SIPA--ADAIF  196 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~~ri~~~~gd~f~-~~P~--aD~~~  196 (199)
                      ..+.+.++ .....+|||||||+|.++..+++  |..+ ++.+|+ |..++.+++..+++++.+|+.+ ++|.  .|+++
T Consensus        24 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~   99 (261)
T 3ege_A           24 NAIINLLN-LPKGSVIADIGAGTGGYSVALAN--QGLF-VYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVI   99 (261)
T ss_dssp             HHHHHHHC-CCTTCEEEEETCTTSHHHHHHHT--TTCE-EEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEE
T ss_pred             HHHHHHhC-CCCCCEEEEEcCcccHHHHHHHh--CCCE-EEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEE
Confidence            34555555 56678999999999999999998  7788 999998 7788888887899999999987 5664  39998


Q ss_pred             ec
Q 037818          197 MK  198 (199)
Q Consensus       197 l~  198 (199)
                      +.
T Consensus       100 ~~  101 (261)
T 3ege_A          100 SI  101 (261)
T ss_dssp             EE
T ss_pred             Ec
Confidence            75

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=98.55  E-value=8.2e-08  Score=76.75  Aligned_cols=74  Identities=15%  Similarity=0.106  Sum_probs=58.1

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHH-CCCCCeeeeccc-hHHHhcCCC----C---CCceEEeCCCCCCCCc-
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQK-HRFICEGINFDL-PEVVGEAPS----I---LGVTHIGGDTFKSIPA-  191 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~-~P~l~~~~v~Dl-p~v~~~a~~----~---~ri~~~~gd~f~~~P~-  191 (199)
                      .++..++ .....+|||+|||+|.++..+++. +|..+ ++.+|. |..++.+++    .   ++++++.+|+.+++|. 
T Consensus       101 ~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~  178 (275)
T 1yb2_A          101 YIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGT-LTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQ  178 (275)
T ss_dssp             -----CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSE-EEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSC
T ss_pred             HHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCC
Confidence            4555555 667789999999999999999998 89999 999998 777776653    2   5899999999987665 


Q ss_pred             -ccEEEe
Q 037818          192 -ADAIFM  197 (199)
Q Consensus       192 -aD~~~l  197 (199)
                       .|++++
T Consensus       179 ~fD~Vi~  185 (275)
T 1yb2_A          179 MYDAVIA  185 (275)
T ss_dssp             CEEEEEE
T ss_pred             CccEEEE
Confidence             399886

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=98.54  E-value=4.9e-08  Score=76.82  Aligned_cols=77  Identities=12%  Similarity=0.072  Sum_probs=64.0

Q ss_pred             HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHH-CCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCC
Q 037818          120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQK-HRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIP  190 (199)
Q Consensus       120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~-~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P  190 (199)
                      ...++..++ .....+|||+|||+|.++..+++. .|..+ ++.+|. |..++.++++       +|++++.+|+.+.+|
T Consensus        82 ~~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  159 (255)
T 3mb5_A           82 AALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGR-VVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIE  159 (255)
T ss_dssp             HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSE-EEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCC
T ss_pred             HHHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeE-EEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccC
Confidence            345566666 667789999999999999999999 89999 999998 7888877753       569999999998777


Q ss_pred             c--ccEEEec
Q 037818          191 A--ADAIFMK  198 (199)
Q Consensus       191 ~--aD~~~l~  198 (199)
                      .  .|++++.
T Consensus       160 ~~~~D~v~~~  169 (255)
T 3mb5_A          160 EENVDHVILD  169 (255)
T ss_dssp             CCSEEEEEEC
T ss_pred             CCCcCEEEEC
Confidence            6  3998863

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=98.53  E-value=1.6e-07  Score=71.36  Aligned_cols=75  Identities=12%  Similarity=0.085  Sum_probs=61.8

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCC---c
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIP---A  191 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P---~  191 (199)
                      .++..++ .....+|||||||+|.++..+++.+|..+ ++.+|. |..++.++++      ++++++.+|+.+.++   .
T Consensus        31 ~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~  108 (204)
T 3e05_A           31 VTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGR-IFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPD  108 (204)
T ss_dssp             HHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSE-EEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCC
T ss_pred             HHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCC
Confidence            4455665 66678999999999999999999999999 999998 7888887753      789999999987543   3


Q ss_pred             ccEEEec
Q 037818          192 ADAIFMK  198 (199)
Q Consensus       192 aD~~~l~  198 (199)
                      .|++++.
T Consensus       109 ~D~i~~~  115 (204)
T 3e05_A          109 PDRVFIG  115 (204)
T ss_dssp             CSEEEES
T ss_pred             CCEEEEC
Confidence            5998864

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=98.53  E-value=1.9e-07  Score=75.79  Aligned_cols=89  Identities=11%  Similarity=0.040  Sum_probs=65.7

Q ss_pred             HHHHHHhccchhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCc
Q 037818          107 LMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGV  178 (199)
Q Consensus       107 ~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri  178 (199)
                      .|.+ +..........+++.++......+|||||||+|.++..+++++ ..+ ++.+|. |..++.++++       +++
T Consensus        93 ~f~~-~~~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v  169 (312)
T 3vc1_A           93 VIAE-LHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSR-VEGVTLSAAQADFGNRRARELRIDDHV  169 (312)
T ss_dssp             HHHH-HHHHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCE-EEEEESCHHHHHHHHHHHHHTTCTTTE
T ss_pred             HHhh-hhhHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCE-EEEEeCCHHHHHHHHHHHHHcCCCCce
Confidence            3443 3333344445566665435566899999999999999999986 578 999998 7778777642       589


Q ss_pred             eEEeCCCCC-CCCc--ccEEEec
Q 037818          179 THIGGDTFK-SIPA--ADAIFMK  198 (199)
Q Consensus       179 ~~~~gd~f~-~~P~--aD~~~l~  198 (199)
                      +++.+|+.+ ++|.  .|+|+..
T Consensus       170 ~~~~~d~~~~~~~~~~fD~V~~~  192 (312)
T 3vc1_A          170 RSRVCNMLDTPFDKGAVTASWNN  192 (312)
T ss_dssp             EEEECCTTSCCCCTTCEEEEEEE
T ss_pred             EEEECChhcCCCCCCCEeEEEEC
Confidence            999999997 5664  3999764

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.51  E-value=7.7e-08  Score=73.33  Aligned_cols=74  Identities=15%  Similarity=0.222  Sum_probs=59.1

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC-CCCc
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK-SIPA  191 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~-~~P~  191 (199)
                      ..+++.++ .... +|||||||+|.++..++++ |..+ ++.+|. |..++.+++.       ++++++.+|+.+ ++|.
T Consensus        34 ~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~-~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~  109 (219)
T 3dlc_A           34 ENIINRFG-ITAG-TCIDIGSGPGALSIALAKQ-SDFS-IRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIED  109 (219)
T ss_dssp             HHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHH-SEEE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCT
T ss_pred             HHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHc-CCCe-EEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCc
Confidence            34445554 4444 9999999999999999999 8888 999998 7777777643       589999999997 6665


Q ss_pred             --ccEEEec
Q 037818          192 --ADAIFMK  198 (199)
Q Consensus       192 --aD~~~l~  198 (199)
                        .|++++.
T Consensus       110 ~~~D~v~~~  118 (219)
T 3dlc_A          110 NYADLIVSR  118 (219)
T ss_dssp             TCEEEEEEE
T ss_pred             ccccEEEEC
Confidence              3999875

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.49  E-value=1e-07  Score=74.30  Aligned_cols=76  Identities=25%  Similarity=0.266  Sum_probs=60.2

Q ss_pred             HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCc-
Q 037818          120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPA-  191 (199)
Q Consensus       120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~-  191 (199)
                      ...+++.++ .....+|||||||+|.++..+++..| .+ ++.+|. |..++.++++      +++++..+|+..++|. 
T Consensus        80 ~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~-~~-v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~  156 (235)
T 1jg1_A           80 VAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TD-VYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPK  156 (235)
T ss_dssp             HHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SC-EEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGG
T ss_pred             HHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhC-CE-EEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCC
Confidence            345556555 66678999999999999999999999 78 999995 7777777652      5799999998666654 


Q ss_pred             --ccEEEec
Q 037818          192 --ADAIFMK  198 (199)
Q Consensus       192 --aD~~~l~  198 (199)
                        .|+|++.
T Consensus       157 ~~fD~Ii~~  165 (235)
T 1jg1_A          157 APYDVIIVT  165 (235)
T ss_dssp             CCEEEEEEC
T ss_pred             CCccEEEEC
Confidence              3998864

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=98.48  E-value=1.3e-07  Score=74.48  Aligned_cols=75  Identities=16%  Similarity=0.270  Sum_probs=59.0

Q ss_pred             HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC-CCCc
Q 037818          120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK-SIPA  191 (199)
Q Consensus       120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~-~~P~  191 (199)
                      ...+++.++ .....+|||||||+|.++..+++..+  + ++.+|+ |..++.+++.      ++++++.+|+.+ ++|.
T Consensus        26 ~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~-v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~  101 (260)
T 1vl5_A           26 LAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--K-VVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD  101 (260)
T ss_dssp             HHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--E-EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCT
T ss_pred             HHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCC--E-EEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCC
Confidence            345566665 56678999999999999999999986  6 899997 7777776642      689999999987 6665


Q ss_pred             --ccEEEec
Q 037818          192 --ADAIFMK  198 (199)
Q Consensus       192 --aD~~~l~  198 (199)
                        .|+|+..
T Consensus       102 ~~fD~V~~~  110 (260)
T 1vl5_A          102 ERFHIVTCR  110 (260)
T ss_dssp             TCEEEEEEE
T ss_pred             CCEEEEEEh
Confidence              3999865

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=98.47  E-value=8e-08  Score=74.96  Aligned_cols=65  Identities=11%  Similarity=0.044  Sum_probs=55.7

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc---ccEEEe
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA---ADAIFM  197 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~---aD~~~l  197 (199)
                      ...+|+|||||+|.++..+++.+|..+ ++.+|. |..++.|+++       +||++..+|.++++|.   .|++++
T Consensus        15 ~g~~VlDIGtGsG~l~i~la~~~~~~~-V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~Ivi   90 (225)
T 3kr9_A           15 QGAILLDVGSDHAYLPIELVERGQIKS-AIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITI   90 (225)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTSEEE-EEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEE
Confidence            447999999999999999999999999 999997 6777777753       6899999999987763   588775

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.46  E-value=4.8e-07  Score=72.92  Aligned_cols=90  Identities=19%  Similarity=0.086  Sum_probs=65.4

Q ss_pred             HHHHHHHhccchhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCC--------C
Q 037818          106 GLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPS--------I  175 (199)
Q Consensus       106 ~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~--------~  175 (199)
                      ..|.+....+.......+....  -....+|||||||+|.++..+++++ |..+ ++.+|. |..++.+++        .
T Consensus        12 ~~y~~~rp~y~~~~~~~l~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~   88 (299)
T 3g5t_A           12 ERYSSSRPSYPSDFYKMIDEYH--DGERKLLVDVGCGPGTATLQMAQELKPFEQ-IIGSDLSATMIKTAEVIKEGSPDTY   88 (299)
T ss_dssp             HHHHHHSCCCCHHHHHHHHHHC--CSCCSEEEEETCTTTHHHHHHHHHSSCCSE-EEEEESCHHHHHHHHHHHHHCC-CC
T ss_pred             HHHhhcCCCCCHHHHHHHHHHh--cCCCCEEEEECCCCCHHHHHHHHhCCCCCE-EEEEeCCHHHHHHHHHHHHhccCCC
Confidence            3455444444443333343332  2456899999999999999999997 8888 999998 777777764        4


Q ss_pred             CCceEEeCCCCC-CCCc--------ccEEEec
Q 037818          176 LGVTHIGGDTFK-SIPA--------ADAIFMK  198 (199)
Q Consensus       176 ~ri~~~~gd~f~-~~P~--------aD~~~l~  198 (199)
                      ++++++.+|+.+ +++.        .|+|++.
T Consensus        89 ~~v~~~~~d~~~~~~~~~~~~~~~~fD~V~~~  120 (299)
T 3g5t_A           89 KNVSFKISSSDDFKFLGADSVDKQKIDMITAV  120 (299)
T ss_dssp             TTEEEEECCTTCCGGGCTTTTTSSCEEEEEEE
T ss_pred             CceEEEEcCHHhCCccccccccCCCeeEEeHh
Confidence            799999999987 4443        3998864

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=98.46  E-value=3e-07  Score=72.28  Aligned_cols=75  Identities=17%  Similarity=0.264  Sum_probs=60.9

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC----CCceEEeCCCCC-CCCc--c
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI----LGVTHIGGDTFK-SIPA--A  192 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~----~ri~~~~gd~f~-~~P~--a  192 (199)
                      ..+++.++ .....+|||||||+|.++..+++++ ..+ ++.+|. |..++.+++.    ++++++.+|+.+ ++|.  .
T Consensus        45 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f  121 (266)
T 3ujc_A           45 KKILSDIE-LNENSKVLDIGSGLGGGCMYINEKY-GAH-THGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNF  121 (266)
T ss_dssp             HHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHH-CCE-EEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCE
T ss_pred             HHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHc-CCE-EEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcE
Confidence            45566666 6677899999999999999999998 678 999998 6777766643    789999999997 5665  3


Q ss_pred             cEEEec
Q 037818          193 DAIFMK  198 (199)
Q Consensus       193 D~~~l~  198 (199)
                      |+++..
T Consensus       122 D~v~~~  127 (266)
T 3ujc_A          122 DLIYSR  127 (266)
T ss_dssp             EEEEEE
T ss_pred             EEEeHH
Confidence            999875

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=98.45  E-value=1.4e-07  Score=72.24  Aligned_cols=76  Identities=26%  Similarity=0.274  Sum_probs=62.2

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC-CCCc
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK-SIPA  191 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~-~~P~  191 (199)
                      ..+++.++ .....+|||||||+|.++..+++.. |..+ ++.+|. |..++.+++.      +++++..+|+.+ +++.
T Consensus        27 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~  104 (219)
T 3dh0_A           27 EKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGK-VYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPD  104 (219)
T ss_dssp             HHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCE-EEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCS
T ss_pred             HHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcE-EEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCC
Confidence            35566666 6677899999999999999999997 8889 999998 7778777653      689999999987 5665


Q ss_pred             --ccEEEec
Q 037818          192 --ADAIFMK  198 (199)
Q Consensus       192 --aD~~~l~  198 (199)
                        .|++++.
T Consensus       105 ~~fD~v~~~  113 (219)
T 3dh0_A          105 NTVDFIFMA  113 (219)
T ss_dssp             SCEEEEEEE
T ss_pred             CCeeEEEee
Confidence              3999864

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.44  E-value=2.6e-07  Score=73.37  Aligned_cols=68  Identities=16%  Similarity=0.250  Sum_probs=57.8

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC-CCCc--ccEEEec
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK-SIPA--ADAIFMK  198 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~-~~P~--aD~~~l~  198 (199)
                      +....+|||||||+|.++..+++.+|..+ ++.+|. |..++.+++.      ++++++.+|+.+ ++|.  .|+|++.
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~  112 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNNPDAE-ITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVC  112 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEE
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEe
Confidence            56678999999999999999999999999 999998 7777777642      689999999997 5554  3999875

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=98.43  E-value=4.4e-07  Score=71.18  Aligned_cols=75  Identities=16%  Similarity=0.157  Sum_probs=58.2

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC-CCCc-
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK-SIPA-  191 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~-~~P~-  191 (199)
                      .+++.+.......+|||||||+|.++..+++.+|. + ++.+|. |..++.+++.       +|++++.+|+.+ ++|. 
T Consensus        36 ~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~  113 (257)
T 3f4k_A           36 KAVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-Q-ITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNE  113 (257)
T ss_dssp             HHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-E-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTT
T ss_pred             HHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-e-EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCC
Confidence            34444422555679999999999999999999996 7 999998 7777776642       679999999976 5554 


Q ss_pred             -ccEEEec
Q 037818          192 -ADAIFMK  198 (199)
Q Consensus       192 -aD~~~l~  198 (199)
                       .|+++..
T Consensus       114 ~fD~v~~~  121 (257)
T 3f4k_A          114 ELDLIWSE  121 (257)
T ss_dssp             CEEEEEEE
T ss_pred             CEEEEEec
Confidence             3999864

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.43  E-value=5.3e-07  Score=68.72  Aligned_cols=74  Identities=19%  Similarity=0.156  Sum_probs=57.1

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC--CCceEEeCCCCCCCCc--ccEEE
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI--LGVTHIGGDTFKSIPA--ADAIF  196 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~--~ri~~~~gd~f~~~P~--aD~~~  196 (199)
                      .+.+.+.......+|||||||+|.++..+++.  ..+ ++.+|. |..++.+++.  ++++++.+|+.+..|.  .|+++
T Consensus        36 ~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~  112 (218)
T 3ou2_A           36 AALERLRAGNIRGDVLELASGTGYWTRHLSGL--ADR-VTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVF  112 (218)
T ss_dssp             HHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH--SSE-EEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEE
T ss_pred             HHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc--CCe-EEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEE
Confidence            34444432445579999999999999999999  557 899997 7777777653  7899999999876554  39998


Q ss_pred             ec
Q 037818          197 MK  198 (199)
Q Consensus       197 l~  198 (199)
                      +.
T Consensus       113 ~~  114 (218)
T 3ou2_A          113 FA  114 (218)
T ss_dssp             EE
T ss_pred             Ee
Confidence            74

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.42  E-value=3.4e-07  Score=73.83  Aligned_cols=42  Identities=17%  Similarity=0.175  Sum_probs=36.6

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCC
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAP  173 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~  173 (199)
                      ....+|||||||+|.++..+++++|..+ ++.+|. |..++.|+
T Consensus        45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~-v~gvDis~~~i~~A~   87 (292)
T 3g07_A           45 FRGRDVLDLGCNVGHLTLSIACKWGPSR-MVGLDIDSRLIHSAR   87 (292)
T ss_dssp             TTTSEEEEESCTTCHHHHHHHHHTCCSE-EEEEESCHHHHHHHH
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHcCCCE-EEEECCCHHHHHHHH
Confidence            3568999999999999999999999999 999998 66666654

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=98.42  E-value=2.7e-07  Score=70.78  Aligned_cols=66  Identities=17%  Similarity=0.196  Sum_probs=55.3

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC-C--CCc--ccEEEec
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK-S--IPA--ADAIFMK  198 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~-~--~P~--aD~~~l~  198 (199)
                      ...+|||||||+|.++..+++.+|+.+ ++.+|. |..++.++++      ++++++.+|+.+ +  +|.  .|++++.
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~-v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~  118 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDIN-YIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLN  118 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCC-EEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEE
Confidence            347899999999999999999999999 999997 7888777642      689999999986 3  444  3888764

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.42  E-value=3.6e-07  Score=71.66  Aligned_cols=74  Identities=14%  Similarity=0.008  Sum_probs=58.9

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC---CCCceEEeCCCCC-CCCc--ccE
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS---ILGVTHIGGDTFK-SIPA--ADA  194 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~---~~ri~~~~gd~f~-~~P~--aD~  194 (199)
                      .+.+.++ .....+|||||||+|.++..+++..+. + ++.+|. |..++.+++   ..+++++.+|+.+ ++|.  .|+
T Consensus        35 ~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~-~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~  111 (253)
T 3g5l_A           35 ELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAK-K-VLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNV  111 (253)
T ss_dssp             HHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCS-E-EEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEE
T ss_pred             HHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCC-E-EEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEE
Confidence            4555555 445689999999999999999999776 7 999998 777777765   3789999999986 5654  399


Q ss_pred             EEec
Q 037818          195 IFMK  198 (199)
Q Consensus       195 ~~l~  198 (199)
                      |++.
T Consensus       112 v~~~  115 (253)
T 3g5l_A          112 VLSS  115 (253)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            9875

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=98.42  E-value=4e-07  Score=72.09  Aligned_cols=75  Identities=15%  Similarity=0.160  Sum_probs=60.3

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-------CCCceEEeCCCCC-CCCc
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-------ILGVTHIGGDTFK-SIPA  191 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-------~~ri~~~~gd~f~-~~P~  191 (199)
                      ..+++.++ .....+|||||||+|.++..+++++ ..+ ++.+|+ |..++.+++       .+|++++.+|+.+ ++|.
T Consensus        51 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~  127 (273)
T 3bus_A           51 DEMIALLD-VRSGDRVLDVGCGIGKPAVRLATAR-DVR-VTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED  127 (273)
T ss_dssp             HHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHS-CCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred             HHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhc-CCE-EEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence            45667776 6677899999999999999999987 578 999998 677776654       2589999999987 6665


Q ss_pred             --ccEEEec
Q 037818          192 --ADAIFMK  198 (199)
Q Consensus       192 --aD~~~l~  198 (199)
                        .|+|+..
T Consensus       128 ~~fD~v~~~  136 (273)
T 3bus_A          128 ASFDAVWAL  136 (273)
T ss_dssp             TCEEEEEEE
T ss_pred             CCccEEEEe
Confidence              3998864

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.42  E-value=4.2e-07  Score=71.30  Aligned_cols=75  Identities=16%  Similarity=0.212  Sum_probs=61.1

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-CCCceEEeCCCCCCCCc--ccEEEe
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-ILGVTHIGGDTFKSIPA--ADAIFM  197 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-~~ri~~~~gd~f~~~P~--aD~~~l  197 (199)
                      .+++.++ .....+|||||||+|.++..+++.+|..+ ++.+|. |..++.+++ .++++++.+|+.+..|.  .|+++.
T Consensus        24 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~-v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~  101 (259)
T 2p35_A           24 DLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNV-ITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLYA  101 (259)
T ss_dssp             HHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTS-EEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEEE
T ss_pred             HHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEEE
Confidence            4556665 56668999999999999999999999999 999998 677777765 47899999999862244  399887


Q ss_pred             c
Q 037818          198 K  198 (199)
Q Consensus       198 ~  198 (199)
                      .
T Consensus       102 ~  102 (259)
T 2p35_A          102 N  102 (259)
T ss_dssp             E
T ss_pred             e
Confidence            5

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.42  E-value=2.9e-07  Score=73.73  Aligned_cols=68  Identities=15%  Similarity=0.137  Sum_probs=56.1

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCC-CCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC-CCCcc-cEEEec
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK-SIPAA-DAIFMK  198 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~-~~P~a-D~~~l~  198 (199)
                      .....+|||||||+|.++..+++.+|. .+ ++.+|+ |..++.+++.     .+++++.+|+.+ +.+.. |++++.
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~   96 (284)
T 3gu3_A           20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSK-YTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICH   96 (284)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCE-EEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEE
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeEEEEC
Confidence            556789999999999999999999995 78 999998 6777766542     389999999997 45543 998875

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=98.41  E-value=5e-07  Score=71.80  Aligned_cols=63  Identities=16%  Similarity=0.079  Sum_probs=54.2

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCCCCceEEeCCCCC-CCCcc--cEEEec
Q 037818          133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSILGVTHIGGDTFK-SIPAA--DAIFMK  198 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~~ri~~~~gd~f~-~~P~a--D~~~l~  198 (199)
                      ..+|||||||+|.++..+++.+.  + ++.+|. |..++.|++.++|+++.+|+-+ ++|.+  |+|+..
T Consensus        40 ~~~vLDvGcGtG~~~~~l~~~~~--~-v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~  106 (257)
T 4hg2_A           40 RGDALDCGCGSGQASLGLAEFFE--R-VHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAA  106 (257)
T ss_dssp             SSEEEEESCTTTTTHHHHHTTCS--E-EEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEEC
T ss_pred             CCCEEEEcCCCCHHHHHHHHhCC--E-EEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEe
Confidence            46899999999999999998874  5 788997 6789999999999999999986 67763  998864

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=98.41  E-value=4.2e-07  Score=71.95  Aligned_cols=67  Identities=15%  Similarity=0.103  Sum_probs=55.6

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC-CCCc--ccEEEec
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK-SIPA--ADAIFMK  198 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~-~~P~--aD~~~l~  198 (199)
                      .....+|||||||+|.++..+++. |..+ ++.+|+ |..++.+++.       ++++++.+|+.+ ++|.  .|+|+..
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~-~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~  121 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGH-VTGQ-VTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSE  121 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTT-CSSE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEES
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhc-cCCE-EEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEc
Confidence            456689999999999999999998 8889 999998 7777777642       679999999986 5554  3999864

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=98.41  E-value=3.3e-07  Score=79.12  Aligned_cols=75  Identities=19%  Similarity=0.133  Sum_probs=59.5

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC-------CCceEEeCCCCC-CCCc-
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI-------LGVTHIGGDTFK-SIPA-  191 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~-------~ri~~~~gd~f~-~~P~-  191 (199)
                      ..+++.++ .....+|||||||+|.++..+++ .|..+ ++.+|..+.++.|++.       +||+++.+|+.+ ++|. 
T Consensus       148 ~~il~~l~-~~~~~~VLDiGcGtG~la~~la~-~~~~~-V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~  224 (480)
T 3b3j_A          148 RAILQNHT-DFKDKIVLDVGCGSGILSFFAAQ-AGARK-IYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ  224 (480)
T ss_dssp             HHHHHTGG-GTTTCEEEEESCSTTHHHHHHHH-TTCSE-EEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred             HHHHHhhh-hcCCCEEEEecCcccHHHHHHHH-cCCCE-EEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCC
Confidence            45556555 44558999999999999998887 68888 9999998777666542       789999999998 6666 


Q ss_pred             ccEEEec
Q 037818          192 ADAIFMK  198 (199)
Q Consensus       192 aD~~~l~  198 (199)
                      .|+|+..
T Consensus       225 fD~Ivs~  231 (480)
T 3b3j_A          225 VDIIISE  231 (480)
T ss_dssp             EEEEECC
T ss_pred             eEEEEEe
Confidence            4999864

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=98.40  E-value=5.5e-07  Score=70.56  Aligned_cols=75  Identities=19%  Similarity=0.199  Sum_probs=58.7

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCC-CCc
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKS-IPA  191 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~-~P~  191 (199)
                      ..+++.++ .....+|||||||+|.++..+++.+ ..+ ++.+|. |..++.+++.       ++++++.+|+.+. .+.
T Consensus        26 ~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~-~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  102 (256)
T 1nkv_A           26 ATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDH-GIT-GTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE  102 (256)
T ss_dssp             HHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHT-CCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred             HHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc-CCe-EEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCC
Confidence            34555565 6666899999999999999999998 678 999998 7777777542       5899999999873 333


Q ss_pred             -ccEEEec
Q 037818          192 -ADAIFMK  198 (199)
Q Consensus       192 -aD~~~l~  198 (199)
                       .|++++.
T Consensus       103 ~fD~V~~~  110 (256)
T 1nkv_A          103 KCDVAACV  110 (256)
T ss_dssp             CEEEEEEE
T ss_pred             CCCEEEEC
Confidence             3998863

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=98.40  E-value=2.2e-07  Score=78.41  Aligned_cols=76  Identities=14%  Similarity=0.172  Sum_probs=59.3

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccch-HHHhcCCC---------------CCCceEEeCC
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP-EVVGEAPS---------------ILGVTHIGGD  184 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp-~v~~~a~~---------------~~ri~~~~gd  184 (199)
                      ..+++.++ .....+|+|||||+|.++..+++.++.-+ ++.+|+. ..++.|++               .++|+++.||
T Consensus       163 ~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~k-VvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD  240 (438)
T 3uwp_A          163 AQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKH-HYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD  240 (438)
T ss_dssp             HHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCSE-EEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred             HHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence            34555555 66678999999999999999999998877 9999984 45554432               2689999999


Q ss_pred             CCC-CCC----cccEEEec
Q 037818          185 TFK-SIP----AADAIFMK  198 (199)
Q Consensus       185 ~f~-~~P----~aD~~~l~  198 (199)
                      +++ +++    .+|+|+++
T Consensus       241 ~~~lp~~d~~~~aDVVf~N  259 (438)
T 3uwp_A          241 FLSEEWRERIANTSVIFVN  259 (438)
T ss_dssp             TTSHHHHHHHHTCSEEEEC
T ss_pred             ccCCccccccCCccEEEEc
Confidence            997 443    46999875

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=98.37  E-value=5.1e-07  Score=75.59  Aligned_cols=75  Identities=13%  Similarity=0.092  Sum_probs=61.4

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC---------CCceEEeCCCCCCCCc
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI---------LGVTHIGGDTFKSIPA  191 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~---------~ri~~~~gd~f~~~P~  191 (199)
                      .+++.++ .....+|+|+|||+|.++..+++++|..+ ++.+|. |..++.++++         .++++..+|+++++|.
T Consensus       213 ~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~-V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~  290 (375)
T 4dcm_A          213 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAK-VVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP  290 (375)
T ss_dssp             HHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCT
T ss_pred             HHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCE-EEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCC
Confidence            4556665 44448999999999999999999999999 999998 7778877753         2588899999998775


Q ss_pred             --ccEEEec
Q 037818          192 --ADAIFMK  198 (199)
Q Consensus       192 --aD~~~l~  198 (199)
                        .|+|+++
T Consensus       291 ~~fD~Ii~n  299 (375)
T 4dcm_A          291 FRFNAVLCN  299 (375)
T ss_dssp             TCEEEEEEC
T ss_pred             CCeeEEEEC
Confidence              3999864

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=98.37  E-value=2e-07  Score=72.86  Aligned_cols=65  Identities=15%  Similarity=0.057  Sum_probs=55.2

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc---ccEEEe
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA---ADAIFM  197 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~---aD~~~l  197 (199)
                      ...+|+|||||+|.++..+++..|..+ ++.+|. |..++.|+++       +||++..||.++.++.   .|++++
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~-V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~Ivi   96 (230)
T 3lec_A           21 KGARLLDVGSDHAYLPIFLLQMGYCDF-AIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITI   96 (230)
T ss_dssp             TTEEEEEETCSTTHHHHHHHHTTCEEE-EEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEE
Confidence            447999999999999999999999999 999997 6777777753       6899999999986543   498875

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=98.36  E-value=4.2e-07  Score=72.99  Aligned_cols=67  Identities=15%  Similarity=0.182  Sum_probs=55.0

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC-CCCc--ccEEEec
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK-SIPA--ADAIFMK  198 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~-~~P~--aD~~~l~  198 (199)
                      .....+|||||||+|.++..+++++ ..+ ++.+|+ |..++.+++.       ++++++.+|+.+ ++|.  .|+|++.
T Consensus        80 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~  157 (297)
T 2o57_A           80 LQRQAKGLDLGAGYGGAARFLVRKF-GVS-IDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQ  157 (297)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHH-CCE-EEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEE
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHh-CCE-EEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEec
Confidence            5666899999999999999999987 457 999998 6777776642       689999999997 6665  3998864

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=98.35  E-value=2.8e-07  Score=68.12  Aligned_cols=73  Identities=18%  Similarity=0.229  Sum_probs=57.4

Q ss_pred             HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc---
Q 037818          123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA---  191 (199)
Q Consensus       123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~---  191 (199)
                      +++.++ .....+|||||||+|.++..+++.+|..+ ++.+|. |..++.++++       +++ ++.+|..+.+|.   
T Consensus        17 ~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~   93 (178)
T 3hm2_A           17 AISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQTT-AVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPD   93 (178)
T ss_dssp             HHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSSEE-EEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCS
T ss_pred             HHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCCCe-EEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCC
Confidence            344455 55668999999999999999999999999 999998 6677776642       378 888998765443   


Q ss_pred             -ccEEEec
Q 037818          192 -ADAIFMK  198 (199)
Q Consensus       192 -aD~~~l~  198 (199)
                       .|++++.
T Consensus        94 ~~D~i~~~  101 (178)
T 3hm2_A           94 NPDVIFIG  101 (178)
T ss_dssp             CCSEEEEC
T ss_pred             CCCEEEEC
Confidence             4998864

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=98.35  E-value=2.1e-07  Score=75.04  Aligned_cols=65  Identities=15%  Similarity=0.136  Sum_probs=55.1

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc-c---cEEEec
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA-A---DAIFMK  198 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~-a---D~~~l~  198 (199)
                      ...+|||||||+|.++..+++. |+.+ ++.+|. |..++.++++       +|++++.+|++++++. .   |+++.+
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~-~~~~-v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~Ivsn  199 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKF-SDAI-VFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSN  199 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHH-SSCE-EEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred             CCCEEEEEeCchhHHHHHHHHC-CCCE-EEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEc
Confidence            3468999999999999999999 9999 999998 7888887753       4799999999986543 5   988764

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=98.34  E-value=6e-07  Score=71.64  Aligned_cols=66  Identities=17%  Similarity=0.181  Sum_probs=56.2

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCc--ccEEEec
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPA--ADAIFMK  198 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~--aD~~~l~  198 (199)
                      ...+|+|||||+|.++..+++.+|..+ ++.+|. |..++.++++      ++++++.+|+++++|.  .|+++.+
T Consensus       109 ~~~~vLDlG~GsG~~~~~la~~~~~~~-v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~n  183 (276)
T 2b3t_A          109 QPCRILDLGTGTGAIALALASERPDCE-IIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSN  183 (276)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHHCTTSE-EEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEEC
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEEC
Confidence            446999999999999999999999999 999998 7777777653      5899999999987644  3998864

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.34  E-value=9.5e-07  Score=67.71  Aligned_cols=66  Identities=9%  Similarity=0.068  Sum_probs=51.0

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccch-HHHh----cCCC------CCCceEEeCCCCC-CCCcc-cEEE
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP-EVVG----EAPS------ILGVTHIGGDTFK-SIPAA-DAIF  196 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp-~v~~----~a~~------~~ri~~~~gd~f~-~~P~a-D~~~  196 (199)
                      .....+|||||||+|.++..+++.+|..+ ++.+|.. ..++    .+++      .++++++.+|+.+ +++.. |.++
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~-v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~  103 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNPSRL-VVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELH  103 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCTTEE-EEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEE
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEE
Confidence            45568999999999999999999999999 9999984 4333    2332      2689999999987 45432 5554

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=98.33  E-value=2.8e-07  Score=70.68  Aligned_cols=67  Identities=18%  Similarity=0.213  Sum_probs=54.6

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----------CCceEEeCCCCC-CCCc--ccEE
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----------LGVTHIGGDTFK-SIPA--ADAI  195 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----------~ri~~~~gd~f~-~~P~--aD~~  195 (199)
                      ....+|||||||+|.++..++++.|..+ ++.+|. |..++.+++.           ++++++.+|+.. +.+.  .|++
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V  106 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQ-ITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAA  106 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTSTTCCE-EEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEE
Confidence            3457999999999999999999999999 999998 7777777642           289999999965 3332  4999


Q ss_pred             Eec
Q 037818          196 FMK  198 (199)
Q Consensus       196 ~l~  198 (199)
                      ++.
T Consensus       107 ~~~  109 (219)
T 3jwg_A          107 TVI  109 (219)
T ss_dssp             EEE
T ss_pred             EEH
Confidence            864

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=98.33  E-value=5.3e-07  Score=71.13  Aligned_cols=65  Identities=18%  Similarity=0.167  Sum_probs=53.6

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-CCCceEEeCCCCC-CCCcc-cEEEec
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-ILGVTHIGGDTFK-SIPAA-DAIFMK  198 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-~~ri~~~~gd~f~-~~P~a-D~~~l~  198 (199)
                      ....+|||||||+|.++..+++..+  + ++.+|+ |..++.+++ ..+++++.+|+.+ +.+.. |++++.
T Consensus        49 ~~~~~vLDiGcG~G~~~~~l~~~~~--~-v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~  117 (263)
T 3pfg_A           49 PKAASLLDVACGTGMHLRHLADSFG--T-VEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCM  117 (263)
T ss_dssp             TTCCEEEEETCTTSHHHHHHTTTSS--E-EEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEEC
T ss_pred             CCCCcEEEeCCcCCHHHHHHHHcCC--e-EEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEc
Confidence            3457999999999999999999865  6 888998 788888876 3799999999987 45443 999864

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.33  E-value=9.6e-07  Score=68.46  Aligned_cols=75  Identities=20%  Similarity=0.206  Sum_probs=57.1

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC---CCceEEeCCCCC-CCCc--cc
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI---LGVTHIGGDTFK-SIPA--AD  193 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~---~ri~~~~gd~f~-~~P~--aD  193 (199)
                      +.+.+.++ .....+|||||||+|.++..+++..+ .+ ++.+|. |..++.+++.   .+++++.+|+.+ ++|.  .|
T Consensus        33 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~-~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD  109 (243)
T 3bkw_A           33 PALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHGA-SY-VLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFD  109 (243)
T ss_dssp             HHHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTTC-SE-EEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEE
T ss_pred             HHHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCCC-Ce-EEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCce
Confidence            34555555 44568999999999999999998843 26 889998 6777777643   579999999986 5554  39


Q ss_pred             EEEec
Q 037818          194 AIFMK  198 (199)
Q Consensus       194 ~~~l~  198 (199)
                      ++++.
T Consensus       110 ~v~~~  114 (243)
T 3bkw_A          110 LAYSS  114 (243)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            98864

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=98.33  E-value=2.8e-07  Score=72.67  Aligned_cols=65  Identities=12%  Similarity=0.134  Sum_probs=55.0

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc---ccEEEe
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA---ADAIFM  197 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~---aD~~~l  197 (199)
                      ...+|+|||||+|.++..+++..|..+ ++.+|. |..++.|+++       +||++..+|.++.++.   .|++++
T Consensus        21 ~g~~VlDIGtGsG~l~i~la~~~~~~~-V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Ivi   96 (244)
T 3gnl_A           21 KNERIADIGSDHAYLPCFAVKNQTASF-AIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVI   96 (244)
T ss_dssp             SSEEEEEETCSTTHHHHHHHHTTSEEE-EEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEE
Confidence            447999999999999999999999999 999997 6777777653       6899999999986543   588775

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=98.32  E-value=1e-06  Score=69.12  Aligned_cols=95  Identities=11%  Similarity=0.133  Sum_probs=70.2

Q ss_pred             CchhHHHHHHHHhccchhh----HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHH-CCCCCeeeeccc-hHHHhcCCC
Q 037818          101 MPEMNGLMRKAMSGVSVPF----ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQK-HRFICEGINFDL-PEVVGEAPS  174 (199)
Q Consensus       101 ~~~~~~~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~-~P~l~~~~v~Dl-p~v~~~a~~  174 (199)
                      +|... .|...|.......    +..++..++ .....+|||+|||+|.++..+++. .|..+ ++.+|. |..++.+++
T Consensus        63 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~-v~~~D~~~~~~~~a~~  139 (258)
T 2pwy_A           63 RPTLE-EYLLHMKRSATPTYPKDASAMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGL-VESYEARPHHLAQAER  139 (258)
T ss_dssp             CCCHH-HHHHHSCCSSCCCCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSE-EEEEESCHHHHHHHHH
T ss_pred             CCCHH-HHhhcCccccccccchHHHHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHH
Confidence            34433 3445554443332    235666666 777789999999999999999999 78899 999997 777777664


Q ss_pred             C-------CCceEEeCCCCCC-CCc--ccEEEec
Q 037818          175 I-------LGVTHIGGDTFKS-IPA--ADAIFMK  198 (199)
Q Consensus       175 ~-------~ri~~~~gd~f~~-~P~--aD~~~l~  198 (199)
                      +       +++++..+|+.+. +|.  .|++++.
T Consensus       140 ~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v~~~  173 (258)
T 2pwy_A          140 NVRAFWQVENVRFHLGKLEEAELEEAAYDGVALD  173 (258)
T ss_dssp             HHHHHCCCCCEEEEESCGGGCCCCTTCEEEEEEE
T ss_pred             HHHHhcCCCCEEEEECchhhcCCCCCCcCEEEEC
Confidence            2       6899999999974 765  4998863

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=98.32  E-value=4e-07  Score=69.79  Aligned_cols=67  Identities=18%  Similarity=0.189  Sum_probs=54.1

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----------CCceEEeCCCCC-CCCc--ccEE
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----------LGVTHIGGDTFK-SIPA--ADAI  195 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----------~ri~~~~gd~f~-~~P~--aD~~  195 (199)
                      ....+|||||||+|.++..+++++|..+ ++.+|. |..++.+++.           ++++++.+|+.. +.+.  .|++
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v  106 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSFFEQ-ITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAA  106 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTTCSE-EEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCCCCE-EEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEE
Confidence            3457999999999999999999999999 999997 6777776542           289999999864 3332  4999


Q ss_pred             Eec
Q 037818          196 FMK  198 (199)
Q Consensus       196 ~l~  198 (199)
                      ++.
T Consensus       107 ~~~  109 (217)
T 3jwh_A          107 TVI  109 (217)
T ss_dssp             EEE
T ss_pred             eeH
Confidence            864

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=98.31  E-value=6.2e-07  Score=71.85  Aligned_cols=56  Identities=14%  Similarity=0.183  Sum_probs=49.6

Q ss_pred             CCcceEEEecCCc---cHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----CCCceEEeCCCCC
Q 037818          131 KGVKQLVDVGGSA---GDCLRMILQKHRFICEGINFDL-PEVVGEAPS----ILGVTHIGGDTFK  187 (199)
Q Consensus       131 ~~~~~vvDvGGG~---G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----~~ri~~~~gd~f~  187 (199)
                      .+..+|||||||+   |.++..+.+.+|+.+ ++.+|+ |.+++.+++    .++++++.+|+++
T Consensus        76 ~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~-v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~  139 (274)
T 2qe6_A           76 AGISQFLDLGSGLPTVQNTHEVAQSVNPDAR-VVYVDIDPMVLTHGRALLAKDPNTAVFTADVRD  139 (274)
T ss_dssp             TCCCEEEEETCCSCCSSCHHHHHHHHCTTCE-EEEEESSHHHHHHHHHHHTTCTTEEEEECCTTC
T ss_pred             cCCCEEEEECCCCCCCChHHHHHHHhCCCCE-EEEEECChHHHHHHHHhcCCCCCeEEEEeeCCC
Confidence            3457999999999   999888889999999 999999 889988875    3789999999986

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.31  E-value=6.9e-07  Score=69.65  Aligned_cols=75  Identities=20%  Similarity=0.241  Sum_probs=59.8

Q ss_pred             HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC-CCCc
Q 037818          120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK-SIPA  191 (199)
Q Consensus       120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~-~~P~  191 (199)
                      ...+++..+ .....+|||||||+|.++..+++..+  + ++.+|. |..++.+++.      ++++++.+|+.+ +++.
T Consensus        10 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~   85 (239)
T 1xxl_A           10 LGLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--E-CIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPD   85 (239)
T ss_dssp             HHHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--E-EEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCT
T ss_pred             cchHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCC--E-EEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCC
Confidence            445667676 77778999999999999999999986  6 889997 6777776642      689999999976 5554


Q ss_pred             --ccEEEec
Q 037818          192 --ADAIFMK  198 (199)
Q Consensus       192 --aD~~~l~  198 (199)
                        .|+++..
T Consensus        86 ~~fD~v~~~   94 (239)
T 1xxl_A           86 DSFDIITCR   94 (239)
T ss_dssp             TCEEEEEEE
T ss_pred             CcEEEEEEC
Confidence              3998865

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.29  E-value=1e-06  Score=65.33  Aligned_cols=59  Identities=20%  Similarity=0.296  Sum_probs=50.1

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCCCCceEEeCCCCCCCCc--ccEEEec
Q 037818          133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSILGVTHIGGDTFKSIPA--ADAIFMK  198 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~~ri~~~~gd~f~~~P~--aD~~~l~  198 (199)
                      ..+|||||||+|.++..++++.   + ++.+|. |..++.   .++++++.+|++++++.  .|+++.+
T Consensus        24 ~~~vLD~GcG~G~~~~~l~~~~---~-v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n   85 (170)
T 3q87_B           24 MKIVLDLGTSTGVITEQLRKRN---T-VVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFN   85 (170)
T ss_dssp             SCEEEEETCTTCHHHHHHTTTS---E-EEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEEC
T ss_pred             CCeEEEeccCccHHHHHHHhcC---c-EEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEEC
Confidence            3699999999999999999988   7 999998 566665   67899999999987764  3998864

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=98.28  E-value=3.5e-07  Score=67.64  Aligned_cols=72  Identities=17%  Similarity=0.167  Sum_probs=57.4

Q ss_pred             HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCc--cc
Q 037818          123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPA--AD  193 (199)
Q Consensus       123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~--aD  193 (199)
                      +.+.++ .....+|||||||+|.++..+++  +..+ ++.+|. |..++.++++      ++++++.+|+.+++|.  .|
T Consensus        27 ~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~--~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D  102 (183)
T 2yxd_A           27 SIGKLN-LNKDDVVVDVGCGSGGMTVEIAK--RCKF-VYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFN  102 (183)
T ss_dssp             HHHHHC-CCTTCEEEEESCCCSHHHHHHHT--TSSE-EEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCS
T ss_pred             HHHHcC-CCCCCEEEEeCCCCCHHHHHHHh--cCCe-EEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCc
Confidence            344444 55567999999999999999998  8888 999997 6777777653      6899999999886664  49


Q ss_pred             EEEec
Q 037818          194 AIFMK  198 (199)
Q Consensus       194 ~~~l~  198 (199)
                      ++++.
T Consensus       103 ~i~~~  107 (183)
T 2yxd_A          103 KAFIG  107 (183)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            98875

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=98.28  E-value=4.9e-07  Score=68.67  Aligned_cols=65  Identities=11%  Similarity=-0.021  Sum_probs=54.0

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCc--ccEEEec
Q 037818          133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPA--ADAIFMK  198 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~--aD~~~l~  198 (199)
                      ..+|+|||||+|.++..+++.+|..+ ++.+|. |..++.++++      ++++++.+|+.+..|.  .|+++.+
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~  139 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSIVRPEAH-FTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISR  139 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECS
T ss_pred             CCeEEEECCCCCHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEe
Confidence            47999999999999999999999999 999997 7777777642      4599999999975443  3998864

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=98.28  E-value=1.8e-06  Score=67.15  Aligned_cols=72  Identities=19%  Similarity=0.382  Sum_probs=55.3

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCCCCceEEeCCCCC---CCCc--ccEE
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSILGVTHIGGDTFK---SIPA--ADAI  195 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~~ri~~~~gd~f~---~~P~--aD~~  195 (199)
                      .+...++.+....+|||||||+|.++..+++.  ..+ ++.+|+ |..++.+++.  ++++.+|+.+   ++|.  .|+|
T Consensus        31 ~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~-v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i  105 (240)
T 3dli_A           31 RLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE--GIE-SIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGV  105 (240)
T ss_dssp             HHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH--TCC-EEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEE
T ss_pred             HHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC--CCc-EEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEE
Confidence            34444442355689999999999999999998  557 889997 6778877755  9999999876   5665  3998


Q ss_pred             Eec
Q 037818          196 FMK  198 (199)
Q Consensus       196 ~l~  198 (199)
                      +..
T Consensus       106 ~~~  108 (240)
T 3dli_A          106 MIS  108 (240)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            864

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.27  E-value=1.1e-05  Score=64.57  Aligned_cols=145  Identities=15%  Similarity=0.135  Sum_probs=87.6

Q ss_pred             HHHcCCCCCCCc--chHHHHHHHHhhCCCCChHHHHHHhcChhhHhhhhhHHHHhhCCCCChhhhhhCCCcccccccCch
Q 037818           26 LTRILPSGDGDA--ENLQRILRLLTSYGGLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPE  103 (199)
Q Consensus        26 A~~~~~~~~~~~--~~l~rlL~~l~~~g~~~~~~~~~~~~~~~~~~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~  103 (199)
                      .+++|+..++.+  -.-+|+.+-+...|-.++..++.....+....-|..+-+.+-.|. +.|        |    ++|.
T Consensus        25 ~~~~Gi~~~~~k~~~~~~Rl~~r~~~~~~~~~~~y~~~l~~~~~~~e~~~l~~~lt~~~-t~F--------f----Rd~~   91 (274)
T 1af7_A           25 YQRAGIVLADHKRDMVYNRLVRRLRALGLDDFGRYLSMLEANQNSAEWQAFINALTTNL-TAF--------F----REAH   91 (274)
T ss_dssp             HHHHCCCCCGGGHHHHHHHHHHHHHHHTCCCHHHHHHHHHHCTTCTHHHHHHHHHCCCC-CCT--------T----TTTT
T ss_pred             HHHHCCCCchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHccCCCHHHHHHHHHHHhhcC-ccc--------c----CChH
Confidence            357787323222  123466666666665566666554432222345888888887776 422        1    2332


Q ss_pred             hHHHHHHHHhccchhhHHHHhhhCCCCCCcceEEEecCCccH----HHHHHHHHCC----CCCeeeeccc-hHHHhcCCC
Q 037818          104 MNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGD----CLRMILQKHR----FICEGINFDL-PEVVGEAPS  174 (199)
Q Consensus       104 ~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~----~~~~l~~~~P----~l~~~~v~Dl-p~v~~~a~~  174 (199)
                      .-..+.+.           ++.. .   +..+|+|+|||+|.    +++.+++..|    +.+ ++..|+ |.+++.|++
T Consensus        92 ~f~~l~~~-----------llp~-~---~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~-I~atDis~~~L~~Ar~  155 (274)
T 1af7_A           92 HFPILAEH-----------ARRR-H---GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWK-VFASDIDTEVLEKARS  155 (274)
T ss_dssp             HHHHHHHH-----------HHHS-C---SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEE-EEEEESCHHHHHHHHH
T ss_pred             HHHHHHHH-----------ccCC-C---CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeE-EEEEECCHHHHHHHHh
Confidence            22222211           1111 1   23689999999998    6667777766    467 999998 667766643


Q ss_pred             C-------------------------------------CCceEEeCCCCC-CCC--c-ccEEEecC
Q 037818          175 I-------------------------------------LGVTHIGGDTFK-SIP--A-ADAIFMKW  199 (199)
Q Consensus       175 ~-------------------------------------~ri~~~~gd~f~-~~P--~-aD~~~l~~  199 (199)
                      .                                     ++|+|..+|+++ ++|  . -|+|+.++
T Consensus       156 ~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crn  221 (274)
T 1af7_A          156 GIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRN  221 (274)
T ss_dssp             TEEEGGGGTTSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECS
T ss_pred             cCCchhhhhcCCHHHHHHHhhccccCCCCceeechhhcccCeEEecccCCCCCCcCCCeeEEEECC
Confidence            1                                     369999999998 466  2 39998764

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=98.26  E-value=1e-06  Score=71.01  Aligned_cols=74  Identities=16%  Similarity=0.109  Sum_probs=59.9

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc-
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA-  191 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~-  191 (199)
                      ..+++.++ .....+|||||||+|.++..++++++ .+ ++.+|+ |..++.+++.       ++|+++.+|+.+- +. 
T Consensus        62 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~-~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~  137 (302)
T 3hem_A           62 KLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VN-VIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DEP  137 (302)
T ss_dssp             HHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CE-EEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CCC
T ss_pred             HHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCC-CE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CCC
Confidence            35666666 67778999999999999999999988 78 999998 7777777642       4899999999764 44 


Q ss_pred             ccEEEec
Q 037818          192 ADAIFMK  198 (199)
Q Consensus       192 aD~~~l~  198 (199)
                      .|+|+..
T Consensus       138 fD~v~~~  144 (302)
T 3hem_A          138 VDRIVSL  144 (302)
T ss_dssp             CSEEEEE
T ss_pred             ccEEEEc
Confidence            4988764

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=98.26  E-value=9.9e-07  Score=70.38  Aligned_cols=76  Identities=17%  Similarity=0.132  Sum_probs=62.6

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHH-CCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQK-HRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA  191 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~-~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~  191 (199)
                      ..++..++ .....+|||+|||+|.++..++++ .|..+ ++.+|. |..++.++++       +++++..+|+.+.+|.
T Consensus       102 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  179 (277)
T 1o54_A          102 SFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGK-VFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE  179 (277)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCE-EEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred             HHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcE-EEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccC
Confidence            35666666 666789999999999999999999 78999 999997 7788777653       5899999999987665


Q ss_pred             --ccEEEec
Q 037818          192 --ADAIFMK  198 (199)
Q Consensus       192 --aD~~~l~  198 (199)
                        .|++++.
T Consensus       180 ~~~D~V~~~  188 (277)
T 1o54_A          180 KDVDALFLD  188 (277)
T ss_dssp             CSEEEEEEC
T ss_pred             CccCEEEEC
Confidence              4998863

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=98.25  E-value=1.2e-07  Score=72.01  Aligned_cols=66  Identities=18%  Similarity=0.096  Sum_probs=45.7

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCCCCC------c-ccEEEe
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFKSIP------A-ADAIFM  197 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~~~P------~-aD~~~l  197 (199)
                      ....+|||||||+|.++..+++.+|+.+ ++.+|. |..++.++++     .+++++.+|++++++      . .|+++.
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~  107 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPGVS-VTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVS  107 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTTEE-EEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEE
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEE
Confidence            5668999999999999999999999999 999998 7888888764     178999999987544      2 398886

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=98.25  E-value=6.5e-07  Score=68.89  Aligned_cols=65  Identities=15%  Similarity=0.209  Sum_probs=52.9

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC------CCCceEEeCCCCC-C--CCc--ccEEEe
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS------ILGVTHIGGDTFK-S--IPA--ADAIFM  197 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~------~~ri~~~~gd~f~-~--~P~--aD~~~l  197 (199)
                      ...+|||||||+|.++..+++.+|+.+ ++.+|. |..++.|++      .++|+++.+|..+ +  +|.  -|.+++
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~-v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~  114 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDIN-YIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYL  114 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSE-EEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEE
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCC-EEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEE
Confidence            347899999999999999999999999 999997 667776654      2689999999876 2  454  277765

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=98.24  E-value=1.2e-06  Score=72.25  Aligned_cols=76  Identities=16%  Similarity=0.145  Sum_probs=59.8

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCCCCCcc-c
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFKSIPAA-D  193 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~~~P~a-D  193 (199)
                      ..+++.++ .....+|||||||+|.++..+++.+|+.+ ++.+|. |..++.++++     .+++++.+|+++..+.. |
T Consensus       186 ~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~-v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD  263 (343)
T 2pjd_A          186 QLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIR-LTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFD  263 (343)
T ss_dssp             HHHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCB-CEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEE
T ss_pred             HHHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCee
Confidence            45666664 34457999999999999999999999999 999998 5667777652     34778999998754443 9


Q ss_pred             EEEec
Q 037818          194 AIFMK  198 (199)
Q Consensus       194 ~~~l~  198 (199)
                      +|+++
T Consensus       264 ~Iv~~  268 (343)
T 2pjd_A          264 MIISN  268 (343)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99874

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.23  E-value=2e-06  Score=67.49  Aligned_cols=66  Identities=11%  Similarity=0.104  Sum_probs=52.4

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-----CCCceEEeCCCCC-CCCc--ccEEEec
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-----ILGVTHIGGDTFK-SIPA--ADAIFMK  198 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-----~~ri~~~~gd~f~-~~P~--aD~~~l~  198 (199)
                      .....+|||||||+|.++..+++.  ..+ ++.+|. |..++.+++     .++++++.+|+.+ ++|.  .|++++.
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~  111 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIAR--GYR-YIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVV  111 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTT--TCE-EEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEE
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHC--CCE-EEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEEC
Confidence            556689999999999999999987  457 889997 666666543     3789999999976 5555  3998864

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.23  E-value=8.8e-07  Score=70.58  Aligned_cols=74  Identities=18%  Similarity=0.141  Sum_probs=58.6

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-CCceEEeCCCCC-CCCcc-cEEE
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-LGVTHIGGDTFK-SIPAA-DAIF  196 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-~ri~~~~gd~f~-~~P~a-D~~~  196 (199)
                      ..+++.++ .....+|||||||+|.++..+++  |..+ ++.+|. |..++.+++. ++++++.+|+.+ +.+.. |+++
T Consensus        47 ~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~  122 (279)
T 3ccf_A           47 EDLLQLLN-PQPGEFILDLGCGTGQLTEKIAQ--SGAE-VLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVF  122 (279)
T ss_dssp             CHHHHHHC-CCTTCEEEEETCTTSHHHHHHHH--TTCE-EEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEE
T ss_pred             HHHHHHhC-CCCCCEEEEecCCCCHHHHHHHh--CCCe-EEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEE
Confidence            34555555 55668999999999999999998  7888 999998 6777777653 789999999987 44443 9988


Q ss_pred             ec
Q 037818          197 MK  198 (199)
Q Consensus       197 l~  198 (199)
                      ..
T Consensus       123 ~~  124 (279)
T 3ccf_A          123 SN  124 (279)
T ss_dssp             EE
T ss_pred             Ec
Confidence            65

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=98.23  E-value=1.5e-06  Score=66.40  Aligned_cols=72  Identities=15%  Similarity=0.199  Sum_probs=56.8

Q ss_pred             HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------C-CceEEeCCCCCC---CCc
Q 037818          123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------L-GVTHIGGDTFKS---IPA  191 (199)
Q Consensus       123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~-ri~~~~gd~f~~---~P~  191 (199)
                      +++.++ .....+|||||||+|.++..+++.  ..+ ++.+|. |..++.++++      + +++++.+|+.+.   .+.
T Consensus        47 ~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~--~~~-v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~  122 (204)
T 3njr_A           47 TLAALA-PRRGELLWDIGGGSGSVSVEWCLA--GGR-AITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPL  122 (204)
T ss_dssp             HHHHHC-CCTTCEEEEETCTTCHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCC
T ss_pred             HHHhcC-CCCCCEEEEecCCCCHHHHHHHHc--CCE-EEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCC
Confidence            344455 566689999999999999999998  777 999998 7778777642      4 899999999873   333


Q ss_pred             ccEEEec
Q 037818          192 ADAIFMK  198 (199)
Q Consensus       192 aD~~~l~  198 (199)
                      .|++++.
T Consensus       123 ~D~v~~~  129 (204)
T 3njr_A          123 PEAVFIG  129 (204)
T ss_dssp             CSEEEEC
T ss_pred             CCEEEEC
Confidence            5998864

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.22  E-value=1e-06  Score=68.78  Aligned_cols=75  Identities=16%  Similarity=0.193  Sum_probs=58.6

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC----CCceEEeCCCCC-CCCc--c
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI----LGVTHIGGDTFK-SIPA--A  192 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~----~ri~~~~gd~f~-~~P~--a  192 (199)
                      ..+++.++ .....+|||||||+|.++..++++. ..+ ++.+|. |..++.+++.    ++++++.+|+.+ ++|.  .
T Consensus        83 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f  159 (254)
T 1xtp_A           83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKL-YAT-TDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTY  159 (254)
T ss_dssp             HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHH-CSE-EEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCE
T ss_pred             HHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhh-cCE-EEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCe
Confidence            34556665 5566899999999999999999987 556 889997 7777777643    689999999986 5554  3


Q ss_pred             cEEEec
Q 037818          193 DAIFMK  198 (199)
Q Consensus       193 D~~~l~  198 (199)
                      |++++.
T Consensus       160 D~v~~~  165 (254)
T 1xtp_A          160 DLIVIQ  165 (254)
T ss_dssp             EEEEEE
T ss_pred             EEEEEc
Confidence            999875

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.22  E-value=3.3e-07  Score=74.14  Aligned_cols=68  Identities=15%  Similarity=0.066  Sum_probs=56.0

Q ss_pred             CCCcceEEEecCCccHHHHHHH-HHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC-CCCcc-cEEEec
Q 037818          130 FKGVKQLVDVGGSAGDCLRMIL-QKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK-SIPAA-DAIFMK  198 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~-~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~-~~P~a-D~~~l~  198 (199)
                      .....+|||||||+|.++..++ ..+|..+ ++.+|. |..++.++++       +|++++.+|+.+ +++.. |++++.
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~  194 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQ-LVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSN  194 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCE-EEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCe-EEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEEC
Confidence            4556899999999999999996 7899999 999998 7788777642       569999999997 45543 999864

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.22  E-value=3.4e-06  Score=63.60  Aligned_cols=62  Identities=24%  Similarity=0.249  Sum_probs=49.1

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCC--CCCeeeeccchHHHhcCCCCCCceEEeCCCCCC
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHR--FICEGINFDLPEVVGEAPSILGVTHIGGDTFKS  188 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P--~l~~~~v~Dlp~v~~~a~~~~ri~~~~gd~f~~  188 (199)
                      .+.+.+..+....+|||||||+|.++..+++++|  ..+ ++.+|+.+.    ...++++++.+|+.+.
T Consensus        12 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~-v~gvD~s~~----~~~~~v~~~~~d~~~~   75 (201)
T 2plw_A           12 ELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNK-IIGIDKKIM----DPIPNVYFIQGEIGKD   75 (201)
T ss_dssp             HHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEE-EEEEESSCC----CCCTTCEEEECCTTTT
T ss_pred             HHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCce-EEEEeCCcc----CCCCCceEEEccccch
Confidence            4455555245568999999999999999999998  688 999998662    1246899999999863

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.21  E-value=7.2e-07  Score=72.92  Aligned_cols=63  Identities=17%  Similarity=0.110  Sum_probs=53.9

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC------CCCceEEeCCCCC---CCCc--ccEEEe
Q 037818          134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS------ILGVTHIGGDTFK---SIPA--ADAIFM  197 (199)
Q Consensus       134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~------~~ri~~~~gd~f~---~~P~--aD~~~l  197 (199)
                      .+|||||||.|.+++.+++.+|+.+ .+++|+ |.+++.+++      .+|++++.+|.++   ..+.  -|+|++
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~-v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~  165 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSR-NTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIR  165 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCE-EEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEE
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcE-EEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEE
Confidence            4999999999999999999999999 999998 788888874      2799999999875   3443  399886

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.21  E-value=1.2e-06  Score=70.63  Aligned_cols=86  Identities=9%  Similarity=0.039  Sum_probs=58.0

Q ss_pred             HHHHHHhcc-chhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC---------
Q 037818          107 LMRKAMSGV-SVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI---------  175 (199)
Q Consensus       107 ~f~~~m~~~-~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~---------  175 (199)
                      .|...+... .......+++.++ .. ..+|||||||+|.++..++++  ..+ ++.+|+ |..++.+++.         
T Consensus        58 ~y~~~~~~~~~~~~~~~~~~~~~-~~-~~~vLDlGcG~G~~~~~l~~~--~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~  132 (299)
T 3g2m_A           58 TYRDLIQDADGTSEAREFATRTG-PV-SGPVLELAAGMGRLTFPFLDL--GWE-VTALELSTSVLAAFRKRLAEAPADVR  132 (299)
T ss_dssp             --------CCCHHHHHHHHHHHC-CC-CSCEEEETCTTTTTHHHHHTT--TCC-EEEEESCHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHhcccCccHHHHHHHHhhC-CC-CCcEEEEeccCCHHHHHHHHc--CCe-EEEEECCHHHHHHHHHHHhhcccccc
Confidence            344444422 2333445666654 33 349999999999999999998  567 999998 7778877642         


Q ss_pred             CCceEEeCCCCC-CCCcc-cEEEe
Q 037818          176 LGVTHIGGDTFK-SIPAA-DAIFM  197 (199)
Q Consensus       176 ~ri~~~~gd~f~-~~P~a-D~~~l  197 (199)
                      .+|+++.+|+.+ +.+.. |++++
T Consensus       133 ~~v~~~~~d~~~~~~~~~fD~v~~  156 (299)
T 3g2m_A          133 DRCTLVQGDMSAFALDKRFGTVVI  156 (299)
T ss_dssp             TTEEEEECBTTBCCCSCCEEEEEE
T ss_pred             cceEEEeCchhcCCcCCCcCEEEE
Confidence            689999999997 45554 98775

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.21  E-value=1.6e-06  Score=72.60  Aligned_cols=66  Identities=15%  Similarity=0.163  Sum_probs=55.6

Q ss_pred             CcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCCC--------------CCceEEeCCCCC-------C
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPSI--------------LGVTHIGGDTFK-------S  188 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~~--------------~ri~~~~gd~f~-------~  188 (199)
                      ...+|||||||+|.++..+++.+ |..+ ++.+|+ |..++.++++              ++++++.+|+.+       +
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~  161 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASKLVGEHGK-VIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG  161 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHTTTCE-EEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred             CCCEEEEecCccCHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence            45799999999999999999997 8889 999998 7777777643              699999999986       5


Q ss_pred             CCc--ccEEEec
Q 037818          189 IPA--ADAIFMK  198 (199)
Q Consensus       189 ~P~--aD~~~l~  198 (199)
                      +|.  .|+|+..
T Consensus       162 ~~~~~fD~V~~~  173 (383)
T 4fsd_A          162 VPDSSVDIVISN  173 (383)
T ss_dssp             CCTTCEEEEEEE
T ss_pred             CCCCCEEEEEEc
Confidence            665  3999864

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=98.20  E-value=9.6e-07  Score=69.41  Aligned_cols=66  Identities=8%  Similarity=-0.014  Sum_probs=53.8

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCC----CCCCC----c-ccE
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDT----FKSIP----A-ADA  194 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~----f~~~P----~-aD~  194 (199)
                      ...+|||||||+|.++..+++++|..+ ++.+|. |..++.|+++       +|++++.+|.    +++++    . .|+
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~  143 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWY-FLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDF  143 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccE
Confidence            456999999999999999999999999 999997 7888777642       5799999994    44555    2 499


Q ss_pred             EEec
Q 037818          195 IFMK  198 (199)
Q Consensus       195 ~~l~  198 (199)
                      ++.+
T Consensus       144 i~~n  147 (254)
T 2h00_A          144 CMCN  147 (254)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            8864

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=98.20  E-value=2.1e-06  Score=70.79  Aligned_cols=74  Identities=20%  Similarity=0.191  Sum_probs=56.9

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC-------CCceEEeCCCCC-CCCc--
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI-------LGVTHIGGDTFK-SIPA--  191 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~-------~ri~~~~gd~f~-~~P~--  191 (199)
                      .+.+... .....+|||||||+|.++..++++ +..+ ++.+|..+.++.+++.       ++|+++.+|+.+ ++|.  
T Consensus        55 ~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~-v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  131 (340)
T 2fyt_A           55 FIYQNPH-IFKDKVVLDVGCGTGILSMFAAKA-GAKK-VLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEK  131 (340)
T ss_dssp             HHHHCGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSE-EEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSC
T ss_pred             HHHhhhh-hcCCCEEEEeeccCcHHHHHHHHc-CCCE-EEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCc
Confidence            3444444 455679999999999999999987 4557 9999987677776642       789999999987 5663  


Q ss_pred             ccEEEec
Q 037818          192 ADAIFMK  198 (199)
Q Consensus       192 aD~~~l~  198 (199)
                      .|+++..
T Consensus       132 ~D~Ivs~  138 (340)
T 2fyt_A          132 VDVIISE  138 (340)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEc
Confidence            4999853

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=98.20  E-value=6e-07  Score=69.52  Aligned_cols=66  Identities=12%  Similarity=0.159  Sum_probs=53.0

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC------CCCceEEeCCCCCC----CCcc--cEEEec
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS------ILGVTHIGGDTFKS----IPAA--DAIFMK  198 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~------~~ri~~~~gd~f~~----~P~a--D~~~l~  198 (199)
                      ...+|||||||+|.++..+++.+|+.+ ++.+|. |..++.+++      .++|+++.+|..+-    +|.+  |.+++.
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~-v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~  112 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQD-FLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLF  112 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSE-EEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCe-EEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence            457999999999999999999999999 999997 666666553      26799999997652    5553  777653

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=98.20  E-value=6.9e-07  Score=69.55  Aligned_cols=68  Identities=18%  Similarity=0.235  Sum_probs=56.6

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCC----c-ccEEE
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIP----A-ADAIF  196 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P----~-aD~~~  196 (199)
                      ..+..+|||||||+|..+..+++.+|..+ ++.+|. |..++.++++       ++|+++.+|..+.+|    . .|+++
T Consensus        69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~  147 (232)
T 3ntv_A           69 MNNVKNILEIGTAIGYSSMQFASISDDIH-VTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIF  147 (232)
T ss_dssp             HHTCCEEEEECCSSSHHHHHHHTTCTTCE-EEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEE
T ss_pred             hcCCCEEEEEeCchhHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEE
Confidence            34568999999999999999999999999 999998 7778777652       589999999987555    2 39988


Q ss_pred             ec
Q 037818          197 MK  198 (199)
Q Consensus       197 l~  198 (199)
                      +.
T Consensus       148 ~~  149 (232)
T 3ntv_A          148 ID  149 (232)
T ss_dssp             EE
T ss_pred             Ec
Confidence            64

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.19  E-value=1.2e-06  Score=67.05  Aligned_cols=73  Identities=16%  Similarity=0.178  Sum_probs=56.3

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC--CCceEEeCCCCC-CCCc-ccEEE
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI--LGVTHIGGDTFK-SIPA-ADAIF  196 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~--~ri~~~~gd~f~-~~P~-aD~~~  196 (199)
                      .+++.+. .....+|||||||+|.++..++++  ..+ ++.+|. |..++.+++.  ++++++.+|+.+ +.+. .|+++
T Consensus        36 ~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~  111 (220)
T 3hnr_A           36 DILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA--GRT-VYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIV  111 (220)
T ss_dssp             HHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT--TCE-EEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEE
T ss_pred             HHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC--CCe-EEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEE
Confidence            3444443 345579999999999999999998  567 899997 6777777653  489999999997 5554 49988


Q ss_pred             ec
Q 037818          197 MK  198 (199)
Q Consensus       197 l~  198 (199)
                      +.
T Consensus       112 ~~  113 (220)
T 3hnr_A          112 ST  113 (220)
T ss_dssp             EE
T ss_pred             EC
Confidence            75

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.19  E-value=1e-06  Score=67.22  Aligned_cols=70  Identities=11%  Similarity=0.049  Sum_probs=53.3

Q ss_pred             hhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC------------------CCCceEEeCC
Q 037818          124 LDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS------------------ILGVTHIGGD  184 (199)
Q Consensus       124 ~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~------------------~~ri~~~~gd  184 (199)
                      ++.+. .....+|||||||+|..+..++++  ..+ ++.+|+ |..++.|++                  ..+|+++.+|
T Consensus        15 ~~~l~-~~~~~~vLD~GCG~G~~~~~la~~--g~~-V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d   90 (203)
T 1pjz_A           15 WSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYH-VVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGD   90 (203)
T ss_dssp             HHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCE-EEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEEC
T ss_pred             HHhcc-cCCCCEEEEeCCCCcHhHHHHHHC--CCe-EEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECc
Confidence            34444 556689999999999999999997  457 999997 566766653                  2589999999


Q ss_pred             CCC-CCC--c-ccEEEe
Q 037818          185 TFK-SIP--A-ADAIFM  197 (199)
Q Consensus       185 ~f~-~~P--~-aD~~~l  197 (199)
                      +++ +.+  . -|+++.
T Consensus        91 ~~~l~~~~~~~fD~v~~  107 (203)
T 1pjz_A           91 FFALTARDIGHCAAFYD  107 (203)
T ss_dssp             CSSSTHHHHHSEEEEEE
T ss_pred             cccCCcccCCCEEEEEE
Confidence            997 443  2 398874

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.18  E-value=2e-06  Score=68.71  Aligned_cols=74  Identities=14%  Similarity=0.102  Sum_probs=58.0

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc-
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA-  191 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~-  191 (199)
                      ..+++.++ .....+|||||||+|.++..++++++. + ++.+|+ |..++.+++.       ++++++.+|+.+ +|. 
T Consensus        54 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~-~-v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~  129 (287)
T 1kpg_A           54 DLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYDV-N-VVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-FDEP  129 (287)
T ss_dssp             HHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHCC-E-EEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-CCCC
T ss_pred             HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcCC-E-EEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CCCC
Confidence            35566666 666689999999999999999988765 7 999998 6777766542       589999999964 444 


Q ss_pred             ccEEEec
Q 037818          192 ADAIFMK  198 (199)
Q Consensus       192 aD~~~l~  198 (199)
                      .|+|+..
T Consensus       130 fD~v~~~  136 (287)
T 1kpg_A          130 VDRIVSI  136 (287)
T ss_dssp             CSEEEEE
T ss_pred             eeEEEEe
Confidence            4998864

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.18  E-value=2.3e-06  Score=64.15  Aligned_cols=73  Identities=14%  Similarity=0.062  Sum_probs=56.8

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC-CCCcc-
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK-SIPAA-  192 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~-~~P~a-  192 (199)
                      .+.+.++ .....+|||||||+|.++..+++.  ..+ ++.+|. |..++.+++.      ++++++.+|+.+ +.+.. 
T Consensus        23 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~   98 (199)
T 2xvm_A           23 EVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GYD-VDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQY   98 (199)
T ss_dssp             HHHHHTT-TSCSCEEEEETCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCE
T ss_pred             HHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHC--CCe-EEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCc
Confidence            4555555 555679999999999999999988  567 999998 7777777642      479999999986 44443 


Q ss_pred             cEEEec
Q 037818          193 DAIFMK  198 (199)
Q Consensus       193 D~~~l~  198 (199)
                      |+++..
T Consensus        99 D~v~~~  104 (199)
T 2xvm_A           99 DFILST  104 (199)
T ss_dssp             EEEEEE
T ss_pred             eEEEEc
Confidence            998864

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=98.18  E-value=2.7e-06  Score=63.25  Aligned_cols=74  Identities=9%  Similarity=0.122  Sum_probs=58.0

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------C--CceEEeCCCCCCCCc
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------L--GVTHIGGDTFKSIPA  191 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~--ri~~~~gd~f~~~P~  191 (199)
                      ..+++.++ .....+|||||||+|.++..+++.  ..+ ++.+|. |..++.++++      +  |++++.+|+.+..+.
T Consensus        42 ~~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~--~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~  117 (194)
T 1dus_A           42 KILVENVV-VDKDDDILDLGCGYGVIGIALADE--VKS-TTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKD  117 (194)
T ss_dssp             HHHHHHCC-CCTTCEEEEETCTTSHHHHHHGGG--SSE-EEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTT
T ss_pred             HHHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHc--CCe-EEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccccc
Confidence            34556665 566689999999999999999988  667 999997 7777776642      3  599999999986554


Q ss_pred             --ccEEEec
Q 037818          192 --ADAIFMK  198 (199)
Q Consensus       192 --aD~~~l~  198 (199)
                        .|++++.
T Consensus       118 ~~~D~v~~~  126 (194)
T 1dus_A          118 RKYNKIITN  126 (194)
T ss_dssp             SCEEEEEEC
T ss_pred             CCceEEEEC
Confidence              3998864

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.17  E-value=9.8e-07  Score=69.90  Aligned_cols=75  Identities=13%  Similarity=0.166  Sum_probs=57.6

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccchH-------HHhcCCCC-------CCceEEeCC-C
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDLPE-------VVGEAPSI-------LGVTHIGGD-T  185 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dlp~-------v~~~a~~~-------~ri~~~~gd-~  185 (199)
                      .+++.++ .....+|||||||+|.++..+++++ |+.+ ++.+|+.+       .++.+++.       ++|+++.+| +
T Consensus        34 ~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~-v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  111 (275)
T 3bkx_A           34 AIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGH-VTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNL  111 (275)
T ss_dssp             HHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCE-EEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCT
T ss_pred             HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCE-EEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence            4556665 6667899999999999999999996 8889 99999854       56666532       689999998 6


Q ss_pred             CC-C--CCc--ccEEEec
Q 037818          186 FK-S--IPA--ADAIFMK  198 (199)
Q Consensus       186 f~-~--~P~--aD~~~l~  198 (199)
                      +. .  +|.  .|++++.
T Consensus       112 ~~~~~~~~~~~fD~v~~~  129 (275)
T 3bkx_A          112 SDDLGPIADQHFDRVVLA  129 (275)
T ss_dssp             TTCCGGGTTCCCSEEEEE
T ss_pred             hhccCCCCCCCEEEEEEc
Confidence            53 2  343  3998864

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.16  E-value=1.7e-06  Score=64.48  Aligned_cols=72  Identities=18%  Similarity=0.147  Sum_probs=56.3

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-CCceEEeCCCCC-CCCc--ccEEE
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-LGVTHIGGDTFK-SIPA--ADAIF  196 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-~ri~~~~gd~f~-~~P~--aD~~~  196 (199)
                      .++..+  .....+|||||||+|.++..+++.  ..+ ++.+|. |..++.+++. ++++++.+|+.+ ++|.  .|+++
T Consensus        38 ~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~-v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~  112 (195)
T 3cgg_A           38 RLIDAM--APRGAKILDAGCGQGRIGGYLSKQ--GHD-VLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIV  112 (195)
T ss_dssp             HHHHHH--SCTTCEEEEETCTTTHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEE
T ss_pred             HHHHHh--ccCCCeEEEECCCCCHHHHHHHHC--CCc-EEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEE
Confidence            344544  245679999999999999999988  457 889997 7777777653 789999999997 5654  39988


Q ss_pred             ec
Q 037818          197 MK  198 (199)
Q Consensus       197 l~  198 (199)
                      +.
T Consensus       113 ~~  114 (195)
T 3cgg_A          113 SA  114 (195)
T ss_dssp             EC
T ss_pred             EC
Confidence            74

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=98.16  E-value=2.1e-06  Score=68.10  Aligned_cols=68  Identities=13%  Similarity=0.133  Sum_probs=54.9

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-------C---CCceEEeCCCCCC--------CC
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-------I---LGVTHIGGDTFKS--------IP  190 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-------~---~ri~~~~gd~f~~--------~P  190 (199)
                      .....+|||||||+|.++..+++++|..+ ++.+|+ |..++.+++       +   +|++++.+|+.+.        ++
T Consensus        34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~-v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~  112 (260)
T 2ozv_A           34 DDRACRIADLGAGAGAAGMAVAARLEKAE-VTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLP  112 (260)
T ss_dssp             CCSCEEEEECCSSSSHHHHHHHHHCTTEE-EEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCC
T ss_pred             ccCCCEEEEeCChHhHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccC
Confidence            44557999999999999999999999999 999998 666666543       2   3799999999875        33


Q ss_pred             c--ccEEEec
Q 037818          191 A--ADAIFMK  198 (199)
Q Consensus       191 ~--aD~~~l~  198 (199)
                      .  .|+|+++
T Consensus       113 ~~~fD~Vv~n  122 (260)
T 2ozv_A          113 DEHFHHVIMN  122 (260)
T ss_dssp             TTCEEEEEEC
T ss_pred             CCCcCEEEEC
Confidence            3  3999874

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.15  E-value=1.3e-06  Score=69.65  Aligned_cols=72  Identities=18%  Similarity=0.190  Sum_probs=55.8

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC-C-CCc
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK-S-IPA  191 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~-~-~P~  191 (199)
                      .+++.++ .. ..+|||||||+|.++..+++.  ..+ ++.+|. |..++.+++.       ++++++.+|+.+ + ++.
T Consensus        60 ~~l~~~~-~~-~~~vLDiGcG~G~~~~~l~~~--~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  134 (285)
T 4htf_A           60 RVLAEMG-PQ-KLRVLDAGGGEGQTAIKMAER--GHQ-VILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLE  134 (285)
T ss_dssp             HHHHHTC-SS-CCEEEEETCTTCHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCS
T ss_pred             HHHHhcC-CC-CCEEEEeCCcchHHHHHHHHC--CCE-EEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcC
Confidence            4455554 33 479999999999999999998  667 999998 7777777642       689999999987 3 344


Q ss_pred             --ccEEEec
Q 037818          192 --ADAIFMK  198 (199)
Q Consensus       192 --aD~~~l~  198 (199)
                        .|+|++.
T Consensus       135 ~~fD~v~~~  143 (285)
T 4htf_A          135 TPVDLILFH  143 (285)
T ss_dssp             SCEEEEEEE
T ss_pred             CCceEEEEC
Confidence              3999875

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=98.15  E-value=9.4e-06  Score=62.85  Aligned_cols=71  Identities=21%  Similarity=0.240  Sum_probs=54.3

Q ss_pred             hhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhc----CCCCCCceEEeCCCCCC-----CCc-c
Q 037818          124 LDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGE----APSILGVTHIGGDTFKS-----IPA-A  192 (199)
Q Consensus       124 ~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~----a~~~~ri~~~~gd~f~~-----~P~-a  192 (199)
                      ++.++ .....+|||||||+|.++..+++.+|..+ ++.+|. |..++.    ++..++++++.+|+.++     ++. .
T Consensus        67 l~~~~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  144 (230)
T 1fbn_A           67 LKVMP-IKRDSKILYLGASAGTTPSHVADIADKGI-VYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKV  144 (230)
T ss_dssp             CCCCC-CCTTCEEEEESCCSSHHHHHHHHHTTTSE-EEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCE
T ss_pred             ccccC-CCCCCEEEEEcccCCHHHHHHHHHcCCcE-EEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccE
Confidence            34444 56668999999999999999999999777 999997 555544    34458899999999862     233 3


Q ss_pred             cEEE
Q 037818          193 DAIF  196 (199)
Q Consensus       193 D~~~  196 (199)
                      |+++
T Consensus       145 D~v~  148 (230)
T 1fbn_A          145 DVIY  148 (230)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8876

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=98.15  E-value=2.6e-06  Score=66.61  Aligned_cols=66  Identities=11%  Similarity=0.181  Sum_probs=52.1

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCC------------CCCCceEEeCCCCCC----CCcc-
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAP------------SILGVTHIGGDTFKS----IPAA-  192 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~------------~~~ri~~~~gd~f~~----~P~a-  192 (199)
                      .+..+|||||||+|.++..+++.+|+.. ++.+|. +..++.|+            ..++|+++.+|..+.    +|.+ 
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~-v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~  123 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTL-ILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQ  123 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSE-EEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTC
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCe-EEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcC
Confidence            3457999999999999999999999999 999998 55655442            237899999999863    4443 


Q ss_pred             -cEEEe
Q 037818          193 -DAIFM  197 (199)
Q Consensus       193 -D~~~l  197 (199)
                       |.+++
T Consensus       124 ~D~v~~  129 (235)
T 3ckk_A          124 LTKMFF  129 (235)
T ss_dssp             EEEEEE
T ss_pred             eeEEEE
Confidence             87765

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=98.14  E-value=1.5e-06  Score=65.65  Aligned_cols=63  Identities=16%  Similarity=0.028  Sum_probs=52.5

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-CCCceEEeCCCCC-CCCc--ccEEEec
Q 037818          133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-ILGVTHIGGDTFK-SIPA--ADAIFMK  198 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-~~ri~~~~gd~f~-~~P~--aD~~~l~  198 (199)
                      ..+|||||||+|.++..++++  ..+ ++.+|. |..++.+++ .++++++.+|+.+ ++|.  .|++++.
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~--~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~  109 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL--GHQ-IEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAW  109 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT--TCC-EEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEE
T ss_pred             CCeEEEecCCCCHHHHHHHhc--CCe-EEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEeh
Confidence            479999999999999999998  557 899997 777887776 4799999999987 5554  3998874

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=98.13  E-value=4.5e-06  Score=64.63  Aligned_cols=65  Identities=17%  Similarity=0.197  Sum_probs=53.4

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC---CCceEEeCCCCC-CCCc--ccEEEec
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI---LGVTHIGGDTFK-SIPA--ADAIFMK  198 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~---~ri~~~~gd~f~-~~P~--aD~~~l~  198 (199)
                      ....+|||||||+|.++..+++.  ..+ ++.+|. |..++.+++.   .+++++.+|+.+ ++|.  .|++++.
T Consensus        52 ~~~~~vLDiG~G~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~  123 (242)
T 3l8d_A           52 KKEAEVLDVGCGDGYGTYKLSRT--GYK-AVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAI  123 (242)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHc--CCe-EEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEc
Confidence            34579999999999999999998  557 899997 7777777654   789999999997 5655  3998864

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=98.13  E-value=2.7e-06  Score=70.35  Aligned_cols=76  Identities=13%  Similarity=-0.021  Sum_probs=62.0

Q ss_pred             HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC-CCC
Q 037818          120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK-SIP  190 (199)
Q Consensus       120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~-~~P  190 (199)
                      +..++.... |....+|+|+|||+|.++.+++... |+.+ ++.+|. |..++.|+++      ++|+++.+|+.+ +.|
T Consensus       192 a~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~-v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~  269 (354)
T 3tma_A          192 AQALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSP-VYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRF  269 (354)
T ss_dssp             HHHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSC-EEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGT
T ss_pred             HHHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCce-EEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccc
Confidence            345556666 8888899999999999999999998 9999 999998 7888877753      489999999997 333


Q ss_pred             c--ccEEEe
Q 037818          191 A--ADAIFM  197 (199)
Q Consensus       191 ~--aD~~~l  197 (199)
                      .  .|+++.
T Consensus       270 ~~~~D~Ii~  278 (354)
T 3tma_A          270 FPEVDRILA  278 (354)
T ss_dssp             CCCCSEEEE
T ss_pred             cCCCCEEEE
Confidence            3  388886

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=98.12  E-value=4.1e-06  Score=66.55  Aligned_cols=94  Identities=11%  Similarity=0.057  Sum_probs=67.9

Q ss_pred             CchhHHHHHHHHhccchh----hHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHH-CCCCCeeeeccc-hHHHhcCCC
Q 037818          101 MPEMNGLMRKAMSGVSVP----FITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQK-HRFICEGINFDL-PEVVGEAPS  174 (199)
Q Consensus       101 ~~~~~~~f~~~m~~~~~~----~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~-~P~l~~~~v~Dl-p~v~~~a~~  174 (199)
                      .|... .|...|......    ....++..++ .....+|||||||+|.++..+++. .|..+ ++.+|. |..++.+++
T Consensus        66 ~p~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~-v~~vD~~~~~~~~a~~  142 (280)
T 1i9g_A           66 RPLLV-DYVMSMPRGPQVIYPKDAAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQ-VISYEQRADHAEHARR  142 (280)
T ss_dssp             CCCHH-HHHTTSCSCSCCCCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSE-EEEECSCHHHHHHHHH
T ss_pred             CCCHH-HHHhhccccceeecHHHHHHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHH
Confidence            44443 344555443332    2335666666 667789999999999999999996 68889 999998 777776653


Q ss_pred             ---------CCCceEEeCCCCC-CCCc--ccEEEe
Q 037818          175 ---------ILGVTHIGGDTFK-SIPA--ADAIFM  197 (199)
Q Consensus       175 ---------~~ri~~~~gd~f~-~~P~--aD~~~l  197 (199)
                               .++++++.+|+.+ +++.  .|++++
T Consensus       143 ~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v~~  177 (280)
T 1i9g_A          143 NVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAVL  177 (280)
T ss_dssp             HHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEEE
T ss_pred             HHHHhcCCCCCcEEEEECchHhcCCCCCceeEEEE
Confidence                     2589999999987 4544  399886

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=98.12  E-value=3.2e-06  Score=64.52  Aligned_cols=75  Identities=16%  Similarity=0.146  Sum_probs=59.0

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCC-c-
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIP-A-  191 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P-~-  191 (199)
                      .+++.+. .....+|||||||+|.++..+++.. |+.+ ++.+|. |..++.+++.      +++++..+|+..++| . 
T Consensus        68 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~  145 (215)
T 2yxe_A           68 MMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGL-VVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLA  145 (215)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGC
T ss_pred             HHHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCC
Confidence            4445555 5566899999999999999999998 7788 999997 6777777642      679999999977655 2 


Q ss_pred             -ccEEEec
Q 037818          192 -ADAIFMK  198 (199)
Q Consensus       192 -aD~~~l~  198 (199)
                       .|+++..
T Consensus       146 ~fD~v~~~  153 (215)
T 2yxe_A          146 PYDRIYTT  153 (215)
T ss_dssp             CEEEEEES
T ss_pred             CeeEEEEC
Confidence             3998864

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.11  E-value=3.1e-06  Score=64.16  Aligned_cols=66  Identities=14%  Similarity=0.097  Sum_probs=53.5

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----CCCceEEeCCCCC-CCCc--ccEEEec
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----ILGVTHIGGDTFK-SIPA--ADAIFMK  198 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----~~ri~~~~gd~f~-~~P~--aD~~~l~  198 (199)
                      ....+|||||||+|.++..+++..+. + ++.+|. |..++.+++    .+++++..+|+.+ +++.  .|+++.+
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~-v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~  114 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGFP-N-VTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEK  114 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTCC-C-EEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEE
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCCC-c-EEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEEC
Confidence            44579999999999999999999776 7 999997 667766654    2689999999987 5654  3999853

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=98.11  E-value=2.9e-06  Score=65.84  Aligned_cols=71  Identities=11%  Similarity=0.108  Sum_probs=55.3

Q ss_pred             hCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccch-H----HHhcCCCCCCceEEeCCCCCC--CC--c--cc
Q 037818          126 GYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDLP-E----VVGEAPSILGVTHIGGDTFKS--IP--A--AD  193 (199)
Q Consensus       126 ~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dlp-~----v~~~a~~~~ri~~~~gd~f~~--~P--~--aD  193 (199)
                      .++ .....+|||||||+|.++..+++.+ |..+ ++.+|.. .    .++.++.+++++++.+|+.++  +|  .  .|
T Consensus        72 ~~~-~~~~~~vLDlG~G~G~~~~~la~~~g~~~~-v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D  149 (233)
T 2ipx_A           72 QIH-IKPGAKVLYLGAASGTTVSHVSDIVGPDGL-VYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVD  149 (233)
T ss_dssp             CCC-CCTTCEEEEECCTTSHHHHHHHHHHCTTCE-EEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEE
T ss_pred             eec-CCCCCEEEEEcccCCHHHHHHHHHhCCCcE-EEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEE
Confidence            344 5566899999999999999999997 7888 9999984 2    455555568999999999873  32  2  39


Q ss_pred             EEEec
Q 037818          194 AIFMK  198 (199)
Q Consensus       194 ~~~l~  198 (199)
                      ++++.
T Consensus       150 ~V~~~  154 (233)
T 2ipx_A          150 VIFAD  154 (233)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            98863

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=98.11  E-value=2e-06  Score=66.64  Aligned_cols=64  Identities=17%  Similarity=0.159  Sum_probs=51.1

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC--CCceEEeCCCCCCCCc--ccEEEec
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI--LGVTHIGGDTFKSIPA--ADAIFMK  198 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~--~ri~~~~gd~f~~~P~--aD~~~l~  198 (199)
                      ...+|||||||+|.++..+++.++  + ++.+|. |..++.+++.  .+++++.+|+.+..|.  .|+|++.
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~--~-v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~  110 (250)
T 2p7i_A           42 RPGNLLELGSFKGDFTSRLQEHFN--D-ITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLT  110 (250)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTCS--C-EEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHhCC--c-EEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEh
Confidence            446899999999999999999987  6 778897 6667766643  2899999999875444  3999875

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=98.11  E-value=4e-06  Score=63.54  Aligned_cols=66  Identities=14%  Similarity=0.075  Sum_probs=52.9

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCcc-cEEEec
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPAA-DAIFMK  198 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~a-D~~~l~  198 (199)
                      ....+|||||||+|.++..+++ .|..+ ++.+|. |..++.++++      +++++..+|+++..+.. |+++..
T Consensus        59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~  132 (205)
T 3grz_A           59 VKPLTVADVGTGSGILAIAAHK-LGAKS-VLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVAN  132 (205)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHH-TTCSE-EEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEE
T ss_pred             cCCCEEEEECCCCCHHHHHHHH-CCCCE-EEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEEC
Confidence            3457999999999999999776 57778 999998 7777777652      34999999998865554 998864

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.10  E-value=4.2e-06  Score=65.33  Aligned_cols=72  Identities=18%  Similarity=0.272  Sum_probs=55.2

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC-CCCcc-c
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK-SIPAA-D  193 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~-~~P~a-D  193 (199)
                      .++.... .....+|||||||+|.++..+++.  ..+ ++.+|. |..++.+++.     .+++++.+|+.+ +.+.. |
T Consensus        32 ~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~--~~~-v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD  107 (252)
T 1wzn_A           32 EIFKEDA-KREVRRVLDLACGTGIPTLELAER--GYE-VVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFD  107 (252)
T ss_dssp             HHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEE
T ss_pred             HHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHC--CCe-EEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCcc
Confidence            3444443 345579999999999999999987  567 999998 7777777642     479999999987 45543 9


Q ss_pred             EEEe
Q 037818          194 AIFM  197 (199)
Q Consensus       194 ~~~l  197 (199)
                      ++++
T Consensus       108 ~v~~  111 (252)
T 1wzn_A          108 AVTM  111 (252)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8875

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=98.10  E-value=2.8e-06  Score=70.29  Aligned_cols=65  Identities=23%  Similarity=0.213  Sum_probs=53.5

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC-------CCceEEeCCCCC-CCCc--ccEEEec
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI-------LGVTHIGGDTFK-SIPA--ADAIFMK  198 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~-------~ri~~~~gd~f~-~~P~--aD~~~l~  198 (199)
                      ...+|||||||+|.++..++++ +..+ ++.+|..+.++.|++.       ++|+++.+|+.+ ++|.  .|+++..
T Consensus        66 ~~~~VLDvGcG~G~~~~~la~~-g~~~-v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~  140 (349)
T 3q7e_A           66 KDKVVLDVGSGTGILCMFAAKA-GARK-VIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISE  140 (349)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHT-TCSE-EEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEEC
T ss_pred             CCCEEEEEeccchHHHHHHHHC-CCCE-EEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEc
Confidence            4479999999999999999988 6667 9999998777776642       679999999997 6774  3999863

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=98.10  E-value=6.9e-07  Score=65.68  Aligned_cols=69  Identities=20%  Similarity=0.176  Sum_probs=55.1

Q ss_pred             hhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-CCCceEEeCCCCCCCCc--ccEEEec
Q 037818          124 LDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-ILGVTHIGGDTFKSIPA--ADAIFMK  198 (199)
Q Consensus       124 ~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-~~ri~~~~gd~f~~~P~--aD~~~l~  198 (199)
                      ++.++ .....+|||||||+|.++..+++++.  + ++.+|. |..++.+++ .+++++..+|  .++|.  .|++++.
T Consensus        10 ~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~--~-v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~   82 (170)
T 3i9f_A           10 LPNIF-EGKKGVIVDYGCGNGFYCKYLLEFAT--K-LYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFA   82 (170)
T ss_dssp             HHHHH-SSCCEEEEEETCTTCTTHHHHHTTEE--E-EEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEE
T ss_pred             HHhcC-cCCCCeEEEECCCCCHHHHHHHhhcC--e-EEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEc
Confidence            34444 56668999999999999999999984  7 899997 777777766 4899999999  44554  3998865

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.10  E-value=3.3e-06  Score=65.38  Aligned_cols=62  Identities=23%  Similarity=0.260  Sum_probs=51.0

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC-CCCcc-cEEEec
Q 037818          133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK-SIPAA-DAIFMK  198 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~-~~P~a-D~~~l~  198 (199)
                      ..+|||||||+|.++..+++.   .+ ++.+|. |..++.+++.     .+++++.+|+.+ +.|.. |++++.
T Consensus        34 ~~~vLdiG~G~G~~~~~l~~~---~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~  103 (243)
T 3d2l_A           34 GKRIADIGCGTGTATLLLADH---YE-VTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITIL  103 (243)
T ss_dssp             TCEEEEESCTTCHHHHHHTTT---SE-EEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEEC
T ss_pred             CCeEEEecCCCCHHHHHHhhC---Ce-EEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEe
Confidence            479999999999999999987   67 999998 7777777653     689999999986 45553 998863

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=98.10  E-value=5.2e-06  Score=65.03  Aligned_cols=58  Identities=10%  Similarity=0.150  Sum_probs=47.9

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCC--------------CCCCceEEeCCCCCCC
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAP--------------SILGVTHIGGDTFKSI  189 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~--------------~~~ri~~~~gd~f~~~  189 (199)
                      ....+|||||||+|.++..+++.+|+.+ ++.+|. +..++.++              ..++++++.+|.++.+
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l  120 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDL-ILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFL  120 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSE-EEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCG
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCC-EEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHH
Confidence            3557999999999999999999999999 999996 66665543              2368999999998743

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.09  E-value=2.7e-06  Score=65.68  Aligned_cols=63  Identities=17%  Similarity=0.211  Sum_probs=52.9

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-CCceEEeCCCCC-CCCcc-cEEE
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-LGVTHIGGDTFK-SIPAA-DAIF  196 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-~ri~~~~gd~f~-~~P~a-D~~~  196 (199)
                      ....+|||||||+|.++..+++.++  + ++.+|. |..++.+++. ++++++.+|+.+ +.+.. |+++
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~-v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~  105 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG--D-TAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVV  105 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS--E-EEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEE
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC--c-EEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEE
Confidence            4457999999999999999999988  6 889998 7888887764 789999999987 44444 9988

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=98.08  E-value=5.4e-06  Score=62.99  Aligned_cols=73  Identities=14%  Similarity=0.164  Sum_probs=57.3

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCc---
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPA---  191 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~---  191 (199)
                      .+++.++ .....+|||||||+|.++..+++.  ..+ ++.+|. |..++.++++      ++++++.+|.++..+.   
T Consensus        68 ~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~--~~~-v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~  143 (210)
T 3lbf_A           68 RMTELLE-LTPQSRVLEIGTGSGYQTAILAHL--VQH-VCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAP  143 (210)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred             HHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHh--CCE-EEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCC
Confidence            4455565 666789999999999999999998  566 889998 7777777642      6899999999975433   


Q ss_pred             ccEEEec
Q 037818          192 ADAIFMK  198 (199)
Q Consensus       192 aD~~~l~  198 (199)
                      .|++++.
T Consensus       144 ~D~i~~~  150 (210)
T 3lbf_A          144 FDAIIVT  150 (210)
T ss_dssp             EEEEEES
T ss_pred             ccEEEEc
Confidence            3998874

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=98.08  E-value=1.7e-06  Score=67.55  Aligned_cols=68  Identities=16%  Similarity=0.059  Sum_probs=54.7

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC-CC----Cc-ccEEE
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK-SI----PA-ADAIF  196 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~-~~----P~-aD~~~  196 (199)
                      +....+|||||||+|.++..+++..|+.+ ++.+|. |..++.++++      ++|+++.+|+.+ +.    +. .|+++
T Consensus        68 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~  146 (240)
T 1xdz_A           68 FNQVNTICDVGAGAGFPSLPIKICFPHLH-VTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVT  146 (240)
T ss_dssp             GGGCCEEEEECSSSCTTHHHHHHHCTTCE-EEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEE
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEE
Confidence            45668999999999999999999999999 999998 6677776642      579999999875 33    23 39988


Q ss_pred             ec
Q 037818          197 MK  198 (199)
Q Consensus       197 l~  198 (199)
                      ..
T Consensus       147 ~~  148 (240)
T 1xdz_A          147 AR  148 (240)
T ss_dssp             EE
T ss_pred             Ee
Confidence            64

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.07  E-value=3.3e-06  Score=65.23  Aligned_cols=65  Identities=11%  Similarity=0.035  Sum_probs=52.6

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-CCCceEEeCCCCCC--CC-c--ccEEEec
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-ILGVTHIGGDTFKS--IP-A--ADAIFMK  198 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-~~ri~~~~gd~f~~--~P-~--aD~~~l~  198 (199)
                      ....+|||||||+|.++..+++.  ..+ ++.+|. |..++.+++ .++++++.+|+.+.  ++ .  .|+|+.+
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~  118 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQ--AAR-WAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR  118 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGG--SSE-EEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc--CCE-EEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC
Confidence            34479999999999999999998  567 999998 777887776 47899999999864  44 3  3988763

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=98.07  E-value=3.5e-06  Score=65.63  Aligned_cols=65  Identities=17%  Similarity=0.154  Sum_probs=51.9

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC---CCCceEEeCCCCC-CCCc-------ccEEEec
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS---ILGVTHIGGDTFK-SIPA-------ADAIFMK  198 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~---~~ri~~~~gd~f~-~~P~-------aD~~~l~  198 (199)
                      ....+|||||||+|.++..+++..+  + ++.+|. |..++.+++   ..+++++.+|+.+ +.+.       .|++++.
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~~--~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~  131 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFFP--R-VIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR  131 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHSS--C-EEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhCC--C-EEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence            4557999999999999999999999  7 889997 677777764   3589999999997 2222       3787764

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.06  E-value=3.8e-06  Score=64.07  Aligned_cols=66  Identities=18%  Similarity=0.222  Sum_probs=52.7

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----CCCceEEeCCCCCCCCc--ccEEEec
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----ILGVTHIGGDTFKSIPA--ADAIFMK  198 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----~~ri~~~~gd~f~~~P~--aD~~~l~  198 (199)
                      .....+|||||||+|.++..+++...  + ++.+|. |..++.+++    .++++++.+|+.+..|.  .|++++.
T Consensus        49 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~  121 (216)
T 3ofk_A           49 SGAVSNGLEIGCAAGAFTEKLAPHCK--R-LTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVA  121 (216)
T ss_dssp             TSSEEEEEEECCTTSHHHHHHGGGEE--E-EEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEE
T ss_pred             cCCCCcEEEEcCCCCHHHHHHHHcCC--E-EEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEc
Confidence            45668999999999999999999863  6 889998 666766654    36899999999974344  3999875

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=98.06  E-value=9.8e-07  Score=69.46  Aligned_cols=68  Identities=16%  Similarity=0.165  Sum_probs=55.1

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCC---CCc---ccE
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKS---IPA---ADA  194 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~---~P~---aD~  194 (199)
                      ..+..+|||||||+|..+..+++.+| ..+ ++.+|. |..++.++++       +||+++.+|..+.   ++.   .|+
T Consensus        61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~  139 (248)
T 3tfw_A           61 LTQAKRILEIGTLGGYSTIWMARELPADGQ-LLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDL  139 (248)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTSCTTCE-EEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSE
T ss_pred             hcCCCEEEEecCCchHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEE
Confidence            34568999999999999999999999 788 999998 7778777642       5899999998752   322   499


Q ss_pred             EEec
Q 037818          195 IFMK  198 (199)
Q Consensus       195 ~~l~  198 (199)
                      +++.
T Consensus       140 V~~d  143 (248)
T 3tfw_A          140 IFID  143 (248)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            8863

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=98.06  E-value=3.1e-06  Score=66.87  Aligned_cols=67  Identities=15%  Similarity=0.150  Sum_probs=54.7

Q ss_pred             CC-CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCC---CCc--ccEE
Q 037818          130 FK-GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKS---IPA--ADAI  195 (199)
Q Consensus       130 ~~-~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~---~P~--aD~~  195 (199)
                      .. ...+|||||||+|.++..++++.+. + ++.+|+ |..++.++++       +|++++.+|+.+.   ++.  .|++
T Consensus        46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~-v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~I  123 (259)
T 3lpm_A           46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-K-IVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIV  123 (259)
T ss_dssp             CCSSCCEEEETTCTTTHHHHHHHTTCCC-E-EEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEE
T ss_pred             CCCCCCEEEEcCCchhHHHHHHHHhcCC-c-EEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEE
Confidence            55 6689999999999999999999887 7 999998 6777777652       5899999999873   333  3999


Q ss_pred             Eec
Q 037818          196 FMK  198 (199)
Q Consensus       196 ~l~  198 (199)
                      +.+
T Consensus       124 i~n  126 (259)
T 3lpm_A          124 TCN  126 (259)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            873

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.05  E-value=3.6e-06  Score=68.13  Aligned_cols=67  Identities=19%  Similarity=0.263  Sum_probs=55.9

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCc--ccEEEec
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPA--ADAIFMK  198 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~--aD~~~l~  198 (199)
                      .....+|||||||+|.++..++.+.|..+ ++.+|. |+.++.|+++      +||+++.+|..+ +|.  .|++++.
T Consensus       120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~-V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~-l~d~~FDvV~~~  195 (298)
T 3fpf_A          120 FRRGERAVFIGGGPLPLTGILLSHVYGMR-VNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETV-IDGLEFDVLMVA  195 (298)
T ss_dssp             CCTTCEEEEECCCSSCHHHHHHHHTTCCE-EEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGG-GGGCCCSEEEEC
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHccCCE-EEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhh-CCCCCcCEEEEC
Confidence            56678999999999988877777889999 999998 8888888753      799999999987 343  4999864

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.05  E-value=4.6e-06  Score=67.09  Aligned_cols=73  Identities=22%  Similarity=0.376  Sum_probs=56.8

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC-CCCc
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK-SIPA  191 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~-~~P~  191 (199)
                      ..+++.++ .....+|||||||+|.++..++++..  + ++.+|. |..++.+++.       ++++++.+|+.+ ++|.
T Consensus        18 ~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~~--~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~   93 (285)
T 1zq9_A           18 NSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAK--K-VVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF   93 (285)
T ss_dssp             HHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSS--E-EEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC
T ss_pred             HHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhCC--E-EEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchh
Confidence            45566666 66668999999999999999999864  6 788887 5666655431       589999999997 6776


Q ss_pred             ccEEEe
Q 037818          192 ADAIFM  197 (199)
Q Consensus       192 aD~~~l  197 (199)
                      .|+++.
T Consensus        94 fD~vv~   99 (285)
T 1zq9_A           94 FDTCVA   99 (285)
T ss_dssp             CSEEEE
T ss_pred             hcEEEE
Confidence            688775

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=98.04  E-value=3.8e-06  Score=63.49  Aligned_cols=65  Identities=22%  Similarity=0.234  Sum_probs=53.1

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-CCceEEeCCCCCCCCc-ccEEEec
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-LGVTHIGGDTFKSIPA-ADAIFMK  198 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-~ri~~~~gd~f~~~P~-aD~~~l~  198 (199)
                      ....+|||+|||+|.++..+++. +..+ ++.+|. |..++.++++ .+++++.+|+.+ +|. .|++++.
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~-~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~D~v~~~  117 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLL-GAES-VTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIMN  117 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHT-TBSE-EEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEEC
T ss_pred             CCCCEEEEEeCCccHHHHHHHHc-CCCE-EEEEECCHHHHHHHHHhcCCCEEEECcHHH-CCCCeeEEEEC
Confidence            44579999999999999999987 5556 999998 7888877754 489999999987 454 4998874

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.04  E-value=6e-06  Score=66.93  Aligned_cols=74  Identities=16%  Similarity=0.148  Sum_probs=58.3

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc-
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA-  191 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~-  191 (199)
                      ..+++.++ .....+|||||||+|.++..+++.+ ..+ ++.+|+ |..++.+++.       ++++++.+|+.+ +|. 
T Consensus        80 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~  155 (318)
T 2fk8_A           80 DLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERF-DVN-VIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-FAEP  155 (318)
T ss_dssp             HHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHH-CCE-EEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-CCCC
T ss_pred             HHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHC-CCE-EEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH-CCCC
Confidence            45666666 6667899999999999999999987 568 999998 7777776642       679999999865 344 


Q ss_pred             ccEEEec
Q 037818          192 ADAIFMK  198 (199)
Q Consensus       192 aD~~~l~  198 (199)
                      .|+++..
T Consensus       156 fD~v~~~  162 (318)
T 2fk8_A          156 VDRIVSI  162 (318)
T ss_dssp             CSEEEEE
T ss_pred             cCEEEEe
Confidence            4988864

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=98.03  E-value=1e-05  Score=61.77  Aligned_cols=76  Identities=20%  Similarity=0.204  Sum_probs=55.3

Q ss_pred             hhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCCCCceEEeCCCCC---CCCc-
Q 037818          117 VPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSILGVTHIGGDTFK---SIPA-  191 (199)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~~ri~~~~gd~f~---~~P~-  191 (199)
                      ......+++.++  ....+|||||||+|.++..+++. + .+ ++.+|. |..++.+++.- .++..+|+.+   +++. 
T Consensus        19 ~~~~~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~-~~-~~~~D~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~   92 (230)
T 3cc8_A           19 NAVNPNLLKHIK--KEWKEVLDIGCSSGALGAAIKEN-G-TR-VSGIEAFPEAAEQAKEKL-DHVVLGDIETMDMPYEEE   92 (230)
T ss_dssp             -CCCHHHHTTCC--TTCSEEEEETCTTSHHHHHHHTT-T-CE-EEEEESSHHHHHHHHTTS-SEEEESCTTTCCCCSCTT
T ss_pred             HHHHHHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhc-C-Ce-EEEEeCCHHHHHHHHHhC-CcEEEcchhhcCCCCCCC
Confidence            333345666554  45579999999999999999998 5 77 999998 67777776542 3788899875   3443 


Q ss_pred             -ccEEEec
Q 037818          192 -ADAIFMK  198 (199)
Q Consensus       192 -aD~~~l~  198 (199)
                       .|++++.
T Consensus        93 ~fD~v~~~  100 (230)
T 3cc8_A           93 QFDCVIFG  100 (230)
T ss_dssp             CEEEEEEE
T ss_pred             ccCEEEEC
Confidence             3998864

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.03  E-value=5.4e-06  Score=65.16  Aligned_cols=67  Identities=7%  Similarity=0.216  Sum_probs=52.9

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----CCCceEEeCCCCC-CCCc
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----ILGVTHIGGDTFK-SIPA  191 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----~~ri~~~~gd~f~-~~P~  191 (199)
                      ..+++..+ .....+|||||||+|.++..++++.  .+ ++.+|. |..++.+++    .++++++.+|+.+ ++|.
T Consensus        20 ~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~--~~-v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~   92 (244)
T 1qam_A           20 DKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC--NF-VTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPK   92 (244)
T ss_dssp             HHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS--SE-EEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCS
T ss_pred             HHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcC--Ce-EEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCccc
Confidence            45666666 6666899999999999999999997  56 889997 566665543    3789999999987 5664

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=98.03  E-value=3e-06  Score=65.62  Aligned_cols=70  Identities=16%  Similarity=0.150  Sum_probs=53.3

Q ss_pred             hhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc--cc
Q 037818          124 LDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA--AD  193 (199)
Q Consensus       124 ~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~--aD  193 (199)
                      +.... +.. .+|||||||+|.++..+++  +..+ ++.+|. |..++.+++.       ++++++.+|+.+..|.  .|
T Consensus        60 ~~~~~-~~~-~~vLDiGcG~G~~~~~l~~--~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD  134 (235)
T 3lcc_A           60 VDTSS-LPL-GRALVPGCGGGHDVVAMAS--PERF-VVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFD  134 (235)
T ss_dssp             HHTTC-SCC-EEEEEETCTTCHHHHHHCB--TTEE-EEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEE
T ss_pred             HHhcC-CCC-CCEEEeCCCCCHHHHHHHh--CCCe-EEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCee
Confidence            33343 444 5999999999999999976  6677 899998 7777776642       5699999999984444  39


Q ss_pred             EEEec
Q 037818          194 AIFMK  198 (199)
Q Consensus       194 ~~~l~  198 (199)
                      +++..
T Consensus       135 ~v~~~  139 (235)
T 3lcc_A          135 LIFDY  139 (235)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            98864

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=98.03  E-value=8.8e-06  Score=62.45  Aligned_cols=68  Identities=12%  Similarity=0.126  Sum_probs=52.2

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchH-----HHhcCCCCCCceEEeCCCCCC-----CCc-ccEEEec
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPE-----VVGEAPSILGVTHIGGDTFKS-----IPA-ADAIFMK  198 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~-----v~~~a~~~~ri~~~~gd~f~~-----~P~-aD~~~l~  198 (199)
                      .....+|||||||+|.++..+++..|.-+ ++.+|..+     .++.++...++.++.+|..++     ++. .|+++..
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~-V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~  133 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVDEGI-IYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD  133 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSE-EEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcCCCE-EEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe
Confidence            45567999999999999999999998667 99999853     344555457899999998763     233 3988753

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=98.03  E-value=1.1e-06  Score=67.68  Aligned_cols=67  Identities=16%  Similarity=0.158  Sum_probs=54.2

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCC-------c-cc
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIP-------A-AD  193 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P-------~-aD  193 (199)
                      .+..+|||||||+|..+..+++++| +.+ ++.+|. |..++.++++       +||+++.+|..+.+|       . .|
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD  135 (223)
T 3duw_A           57 QGARNILEIGTLGGYSTIWLARGLSSGGR-VVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD  135 (223)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCSSCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred             hCCCEEEEecCCccHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence            4457999999999999999999999 788 999997 7777777642       579999999976322       2 48


Q ss_pred             EEEec
Q 037818          194 AIFMK  198 (199)
Q Consensus       194 ~~~l~  198 (199)
                      ++++.
T Consensus       136 ~v~~d  140 (223)
T 3duw_A          136 FIFID  140 (223)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            88863

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=98.02  E-value=6e-06  Score=68.24  Aligned_cols=74  Identities=19%  Similarity=0.137  Sum_probs=56.4

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC-------CCceEEeCCCCC-CCCc-c
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI-------LGVTHIGGDTFK-SIPA-A  192 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~-------~ri~~~~gd~f~-~~P~-a  192 (199)
                      .+.+.+. .....+|||||||+|.++..++++ +..+ ++.+|..+.++.+++.       ++|+++.+|+.+ +.|. .
T Consensus        41 ~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~-V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~  117 (348)
T 2y1w_A           41 AILQNHT-DFKDKIVLDVGCGSGILSFFAAQA-GARK-IYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQV  117 (348)
T ss_dssp             HHHHTGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSE-EEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCE
T ss_pred             HHHhccc-cCCcCEEEEcCCCccHHHHHHHhC-CCCE-EEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCce
Confidence            4455554 445579999999999999998885 6667 9999987666665531       789999999987 5665 4


Q ss_pred             cEEEec
Q 037818          193 DAIFMK  198 (199)
Q Consensus       193 D~~~l~  198 (199)
                      |+++..
T Consensus       118 D~Ivs~  123 (348)
T 2y1w_A          118 DIIISE  123 (348)
T ss_dssp             EEEEEC
T ss_pred             eEEEEe
Confidence            998864

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=98.02  E-value=1.4e-05  Score=61.57  Aligned_cols=72  Identities=18%  Similarity=0.191  Sum_probs=53.7

Q ss_pred             hhCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHH----hcCCCCCCceEEeCCCCCC-----CCc-c
Q 037818          125 DGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVV----GEAPSILGVTHIGGDTFKS-----IPA-A  192 (199)
Q Consensus       125 ~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~----~~a~~~~ri~~~~gd~f~~-----~P~-a  192 (199)
                      +.++ .....+|||+|||+|.++..+++.. |..+ ++.+|. |..+    +.++..++++++.+|+.+.     ++. .
T Consensus        67 ~~~~-~~~~~~vLDlG~G~G~~~~~la~~~~~~~~-v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  144 (227)
T 1g8a_A           67 KNFP-IKPGKSVLYLGIASGTTASHVSDIVGWEGK-IFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKV  144 (227)
T ss_dssp             CCCC-CCTTCEEEEETTTSTTHHHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCE
T ss_pred             HhcC-CCCCCEEEEEeccCCHHHHHHHHHhCCCeE-EEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCc
Confidence            3343 5566799999999999999999985 6678 999997 4333    3444458999999999872     233 3


Q ss_pred             cEEEec
Q 037818          193 DAIFMK  198 (199)
Q Consensus       193 D~~~l~  198 (199)
                      |++++.
T Consensus       145 D~v~~~  150 (227)
T 1g8a_A          145 DVIFED  150 (227)
T ss_dssp             EEEEEC
T ss_pred             eEEEEC
Confidence            988863

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=98.01  E-value=1.5e-06  Score=64.41  Aligned_cols=66  Identities=8%  Similarity=0.077  Sum_probs=52.5

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCC---CCc-ccEEEec
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKS---IPA-ADAIFMK  198 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~---~P~-aD~~~l~  198 (199)
                      ....+|||+|||+|.++..+++. +..+ ++.+|. |..++.++++       ++++++.+|+.+.   .+. .|++++.
T Consensus        30 ~~~~~vLDlGcG~G~~~~~l~~~-~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~  107 (177)
T 2esr_A           30 FNGGRVLDLFAGSGGLAIEAVSR-GMSA-AVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLD  107 (177)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHT-TCCE-EEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEEC
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHc-CCCE-EEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEEC
Confidence            34579999999999999999987 6678 999998 7777777642       5799999999863   223 4988864

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.01  E-value=1.2e-06  Score=68.55  Aligned_cols=65  Identities=12%  Similarity=0.036  Sum_probs=50.0

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC---CCCcc--cEEEe
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK---SIPAA--DAIFM  197 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~---~~P~a--D~~~l  197 (199)
                      ....+|||||||.|..+..+++..|. + .|++|+ |.+++.|++.     .+++++.+|..+   ++|..  |.+++
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~-v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~  134 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPID-E-HWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILY  134 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCEE-E-EEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCCc-E-EEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEE
Confidence            34579999999999999999998885 6 888997 8888888752     568888888643   45552  76653

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=98.00  E-value=2.7e-06  Score=67.17  Aligned_cols=68  Identities=13%  Similarity=0.035  Sum_probs=54.7

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC-CC----Cc-ccEEE
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK-SI----PA-ADAIF  196 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~-~~----P~-aD~~~  196 (199)
                      .....+|+|||||+|..+..++..+|+.+ ++.+|. +..++.++++      ++|+++.+|..+ +.    +. .|+++
T Consensus        78 ~~~~~~vLDiG~G~G~~~i~la~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~  156 (249)
T 3g89_A           78 WQGPLRVLDLGTGAGFPGLPLKIVRPELE-LVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAV  156 (249)
T ss_dssp             CCSSCEEEEETCTTTTTHHHHHHHCTTCE-EEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEE
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEE
Confidence            45568999999999999999999999999 999996 6777776642      569999999875 22    13 39887


Q ss_pred             ec
Q 037818          197 MK  198 (199)
Q Consensus       197 l~  198 (199)
                      .+
T Consensus       157 s~  158 (249)
T 3g89_A          157 AR  158 (249)
T ss_dssp             EE
T ss_pred             EC
Confidence            64

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=98.00  E-value=4.4e-06  Score=63.55  Aligned_cols=66  Identities=20%  Similarity=0.133  Sum_probs=52.3

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCCCCceEEeCCCCC-CCCc-ccEEEec
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSILGVTHIGGDTFK-SIPA-ADAIFMK  198 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~~ri~~~~gd~f~-~~P~-aD~~~l~  198 (199)
                      .....+|||||||+|.++..+++.  ..+ ++.+|. |..++.+++.-++++..+|+.+ +.+. .|++++.
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~  109 (211)
T 3e23_A           41 LPAGAKILELGCGAGYQAEAMLAA--GFD-VDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAH  109 (211)
T ss_dssp             SCTTCEEEESSCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEEC
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHc--CCe-EEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEec
Confidence            344579999999999999999988  557 899998 7778877765578899999886 4222 3998875

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=98.00  E-value=3.4e-06  Score=65.33  Aligned_cols=67  Identities=13%  Similarity=0.134  Sum_probs=54.8

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCC-----Cc-ccEEE
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSI-----PA-ADAIF  196 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~-----P~-aD~~~  196 (199)
                      ....+|||||||+|.++..+++.+|..+ ++.+|. |..++.++++       ++|+++.+|+.+.+     +. .|+++
T Consensus        53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~  131 (233)
T 2gpy_A           53 AAPARILEIGTAIGYSAIRMAQALPEAT-IVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF  131 (233)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHCTTCE-EEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence            3457999999999999999999999888 999998 7777777642       58999999998732     23 39888


Q ss_pred             ec
Q 037818          197 MK  198 (199)
Q Consensus       197 l~  198 (199)
                      +.
T Consensus       132 ~~  133 (233)
T 2gpy_A          132 ID  133 (233)
T ss_dssp             EE
T ss_pred             EC
Confidence            64

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=98.00  E-value=4.9e-06  Score=61.97  Aligned_cols=66  Identities=12%  Similarity=0.066  Sum_probs=51.2

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC--CCC-c-ccEEEec
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK--SIP-A-ADAIFMK  198 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~--~~P-~-aD~~~l~  198 (199)
                      .....+|||||||+|.++..++++  ..+ ++.+|. |..++.++++      ++++++.+|+.+  +++ . .|++++.
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~-v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~   96 (185)
T 3mti_A           20 LDDESIVVDATMGNGNDTAFLAGL--SKK-VYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFN   96 (185)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTT--SSE-EEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEE
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHh--CCE-EEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEe
Confidence            355689999999999999999988  677 999997 7777777652      789999977654  233 3 3888754

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=97.98  E-value=8.9e-06  Score=61.54  Aligned_cols=61  Identities=28%  Similarity=0.389  Sum_probs=48.2

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCCCCceEEeCCCCCC
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFKS  188 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~~ri~~~~gd~f~~  188 (199)
                      ..+.+.|..+....+|||+|||+|.++..++++  ..+ ++.+|+-+.    ...++++++.+|+.+.
T Consensus        14 ~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~-V~gvD~~~~----~~~~~v~~~~~D~~~~   74 (191)
T 3dou_A           14 EFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARK-IISIDLQEM----EEIAGVRFIRCDIFKE   74 (191)
T ss_dssp             HHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSE-EEEEESSCC----CCCTTCEEEECCTTSS
T ss_pred             HHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCc-EEEEecccc----ccCCCeEEEEccccCH
Confidence            355566654566789999999999999999988  667 899998542    2347899999999873

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=97.98  E-value=3.9e-06  Score=63.12  Aligned_cols=68  Identities=15%  Similarity=0.122  Sum_probs=53.6

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC-C-CC-c-ccEEE
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK-S-IP-A-ADAIF  196 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~-~-~P-~-aD~~~  196 (199)
                      .....+|||+|||+|.++..+++++ |..+ ++.+|. |..++.++++       ++++++.+|+.+ + .+ . .|+++
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~   98 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGENGR-VFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVM   98 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTTCE-EEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEE
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEE
Confidence            3445799999999999999999986 7778 999998 6777777653       689999999865 2 33 3 38887


Q ss_pred             ec
Q 037818          197 MK  198 (199)
Q Consensus       197 l~  198 (199)
                      +.
T Consensus        99 ~~  100 (197)
T 3eey_A           99 FN  100 (197)
T ss_dssp             EE
T ss_pred             Ec
Confidence            53

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=97.97  E-value=4.7e-06  Score=66.72  Aligned_cols=66  Identities=23%  Similarity=0.284  Sum_probs=53.6

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----------CCCceEEeCCCCCCC---Ccc-cEEE
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----------ILGVTHIGGDTFKSI---PAA-DAIF  196 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----------~~ri~~~~gd~f~~~---P~a-D~~~  196 (199)
                      +.++|||||||+|.+++++++..|..+ ++.+|+ |.+++.+++          .+|++++.+|.++.+   +.. |+|+
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii  153 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKK-ATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSE-EEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCce-EEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence            458999999999999999998877788 999998 788877653          379999999988632   233 9988


Q ss_pred             ec
Q 037818          197 MK  198 (199)
Q Consensus       197 l~  198 (199)
                      +.
T Consensus       154 ~d  155 (275)
T 1iy9_A          154 VD  155 (275)
T ss_dssp             ES
T ss_pred             EC
Confidence            63

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=97.97  E-value=3e-06  Score=62.94  Aligned_cols=67  Identities=7%  Similarity=-0.018  Sum_probs=52.6

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCC------Cc-ccE
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSI------PA-ADA  194 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~------P~-aD~  194 (199)
                      .....+|||+|||+|.++..+++ .+..+ ++.+|. |..++.++++       ++++++.+|+.+..      +. .|+
T Consensus        42 ~~~~~~vLD~GcG~G~~~~~~~~-~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~  119 (187)
T 2fhp_A           42 YFDGGMALDLYSGSGGLAIEAVS-RGMDK-SICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDL  119 (187)
T ss_dssp             CCSSCEEEETTCTTCHHHHHHHH-TTCSE-EEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             hcCCCCEEEeCCccCHHHHHHHH-cCCCE-EEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCE
Confidence            34457999999999999999887 56677 999998 7788877752       57999999998732      23 398


Q ss_pred             EEec
Q 037818          195 IFMK  198 (199)
Q Consensus       195 ~~l~  198 (199)
                      +++.
T Consensus       120 i~~~  123 (187)
T 2fhp_A          120 VLLD  123 (187)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            8864

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=97.96  E-value=1.7e-06  Score=66.52  Aligned_cols=67  Identities=13%  Similarity=0.034  Sum_probs=53.4

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCC--------c-c
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIP--------A-A  192 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P--------~-a  192 (199)
                      ....+|||||||+|..+..+++.+| ..+ .+.+|. |..++.++++       ++|+++.+|..+.+|        . .
T Consensus        63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  141 (225)
T 3tr6_A           63 MQAKKVIDIGTFTGYSAIAMGLALPKDGT-LITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQY  141 (225)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCTTCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCE
T ss_pred             hCCCEEEEeCCcchHHHHHHHHhCCCCCE-EEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCc
Confidence            3457999999999999999999998 778 999998 6777776642       679999999975321        3 3


Q ss_pred             cEEEec
Q 037818          193 DAIFMK  198 (199)
Q Consensus       193 D~~~l~  198 (199)
                      |++++.
T Consensus       142 D~v~~~  147 (225)
T 3tr6_A          142 DLIYID  147 (225)
T ss_dssp             EEEEEC
T ss_pred             cEEEEC
Confidence            888864

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=97.96  E-value=1.1e-05  Score=65.27  Aligned_cols=74  Identities=11%  Similarity=0.126  Sum_probs=57.2

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----CCCceEEeCCCCC-CCCc--c
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----ILGVTHIGGDTFK-SIPA--A  192 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----~~ri~~~~gd~f~-~~P~--a  192 (199)
                      ..+++..+ .....+|||||||+|.++..++++  ..+ ++.+|. |..++.+++    .++++++.+|+.+ ++|.  .
T Consensus        40 ~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~--~~~-V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~f  115 (295)
T 3gru_A           40 NKAVESAN-LTKDDVVLEIGLGKGILTEELAKN--AKK-VYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDF  115 (295)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSE-EEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCC
T ss_pred             HHHHHhcC-CCCcCEEEEECCCchHHHHHHHhc--CCE-EEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCc
Confidence            45666666 666689999999999999999998  355 888887 555666554    3799999999997 6766  3


Q ss_pred             cEEEec
Q 037818          193 DAIFMK  198 (199)
Q Consensus       193 D~~~l~  198 (199)
                      |+++.+
T Consensus       116 D~Iv~N  121 (295)
T 3gru_A          116 NKVVAN  121 (295)
T ss_dssp             SEEEEE
T ss_pred             cEEEEe
Confidence            887753

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=97.96  E-value=2e-05  Score=61.23  Aligned_cols=73  Identities=18%  Similarity=0.154  Sum_probs=58.0

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCC-Cc
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSI-PA  191 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~-P~  191 (199)
                      ..++...+ .....+|||+|||+|.++..++++  ..+ ++.+|. |..++.++++       +++++..+|+.+.. +.
T Consensus        81 ~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~--~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~  156 (248)
T 2yvl_A           81 FYIALKLN-LNKEKRVLEFGTGSGALLAVLSEV--AGE-VWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPE  156 (248)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSE-EEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCT
T ss_pred             HHHHHhcC-CCCCCEEEEeCCCccHHHHHHHHh--CCE-EEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCC
Confidence            34555665 666689999999999999999999  667 999996 6777776642       68999999999865 54


Q ss_pred             --ccEEEe
Q 037818          192 --ADAIFM  197 (199)
Q Consensus       192 --aD~~~l  197 (199)
                        .|++++
T Consensus       157 ~~~D~v~~  164 (248)
T 2yvl_A          157 GIFHAAFV  164 (248)
T ss_dssp             TCBSEEEE
T ss_pred             CcccEEEE
Confidence              499886

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=97.96  E-value=1.1e-05  Score=63.11  Aligned_cols=64  Identities=19%  Similarity=0.135  Sum_probs=52.4

Q ss_pred             cceEEEecCCccHHHHHHHHH----CCCCCeeeeccc-hHHHhcCCC-CCCceEEeCCCCCC--CC---c--ccEEEe
Q 037818          133 VKQLVDVGGSAGDCLRMILQK----HRFICEGINFDL-PEVVGEAPS-ILGVTHIGGDTFKS--IP---A--ADAIFM  197 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~----~P~l~~~~v~Dl-p~v~~~a~~-~~ri~~~~gd~f~~--~P---~--aD~~~l  197 (199)
                      ..+|||||||+|..+..+++.    +|..+ ++.+|. |..++.++. .++|+++.||..+.  +|   .  -|++++
T Consensus        82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~-V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~  158 (236)
T 2bm8_A           82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQ-VIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFI  158 (236)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHHHHTTCCCE-EEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEE
T ss_pred             CCEEEEEeCCCCHHHHHHHHhhhhcCCCCE-EEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEE
Confidence            469999999999999999998    78999 999998 666777764 37899999999873  22   2  388875

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=97.96  E-value=1e-05  Score=62.08  Aligned_cols=65  Identities=15%  Similarity=0.124  Sum_probs=51.5

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----------CCceEEeCCCCC-CCCc--ccEE
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----------LGVTHIGGDTFK-SIPA--ADAI  195 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----------~ri~~~~gd~f~-~~P~--aD~~  195 (199)
                      ....+|||||||+|.++..+++.  ..+ ++.+|. |..++.+++.           +++++..+|+.+ +++.  .|++
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v  105 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASK--GYS-VTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFA  105 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhC--CCe-EEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEE
Confidence            34579999999999999999998  567 999998 6666666531           368999999987 5555  3998


Q ss_pred             Eec
Q 037818          196 FMK  198 (199)
Q Consensus       196 ~l~  198 (199)
                      ++.
T Consensus       106 ~~~  108 (235)
T 3sm3_A          106 VMQ  108 (235)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            864

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=97.96  E-value=5.9e-06  Score=66.14  Aligned_cols=66  Identities=18%  Similarity=0.003  Sum_probs=54.1

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc--ccEEEec
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA--ADAIFMK  198 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~--aD~~~l~  198 (199)
                      ....+|||+|||+|.++..+++..+. + ++.+|. |..++.++++       ++++++.+|.++..+.  .|++++.
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~-V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~  199 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGKA-K-VIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMG  199 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCC-E-EEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEEC
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCCC-E-EEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEEC
Confidence            34579999999999999999999988 7 999998 6777777642       5799999999985433  4998874

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=97.96  E-value=6.6e-06  Score=64.96  Aligned_cols=66  Identities=17%  Similarity=0.194  Sum_probs=54.7

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-CCceEEeCCCCC-CCCc--ccEEEe
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-LGVTHIGGDTFK-SIPA--ADAIFM  197 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-~ri~~~~gd~f~-~~P~--aD~~~l  197 (199)
                      ....+|||||||+|.++..+++.+|..+ ++.+|. |..++.+++. +++.+..+|+.+ +++.  .|+++.
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~  154 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEIT-TFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIR  154 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSE-EEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEE
Confidence            3457999999999999999999999888 999998 6777777653 789999999976 5554  398875

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=97.96  E-value=4.8e-06  Score=68.25  Aligned_cols=65  Identities=20%  Similarity=0.228  Sum_probs=52.0

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC-------CCceEEeCCCCC-CCCc--ccEEEec
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI-------LGVTHIGGDTFK-SIPA--ADAIFMK  198 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~-------~ri~~~~gd~f~-~~P~--aD~~~l~  198 (199)
                      ...+|||||||+|.++..++++ +..+ ++.+|..+.++.+++.       ++|+++.+|+.+ ++|.  .|+++..
T Consensus        38 ~~~~VLDiGcGtG~ls~~la~~-g~~~-v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~  112 (328)
T 1g6q_1           38 KDKIVLDVGCGTGILSMFAAKH-GAKH-VIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISE  112 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-CCSE-EEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEEC
T ss_pred             CCCEEEEecCccHHHHHHHHHC-CCCE-EEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEe
Confidence            3479999999999999998886 5557 9999987677766542       689999999987 5663  4998854

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=97.95  E-value=8.7e-06  Score=67.99  Aligned_cols=74  Identities=20%  Similarity=0.176  Sum_probs=56.0

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC-------CCceEEeCCCCC-CCCc-c
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI-------LGVTHIGGDTFK-SIPA-A  192 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~-------~ri~~~~gd~f~-~~P~-a  192 (199)
                      .+.+... .....+|||||||+|.++..++++. ..+ ++.+|....++.+++.       ++|+++.+|+.+ ++|. .
T Consensus        54 ~i~~~~~-~~~~~~VLDlGcGtG~ls~~la~~g-~~~-V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  130 (376)
T 3r0q_C           54 AVFQNKH-HFEGKTVLDVGTGSGILAIWSAQAG-ARK-VYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKV  130 (376)
T ss_dssp             HHHTTTT-TTTTCEEEEESCTTTHHHHHHHHTT-CSE-EEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCE
T ss_pred             HHHhccc-cCCCCEEEEeccCcCHHHHHHHhcC-CCE-EEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcc
Confidence            3444444 4556899999999999999999883 336 9999988666666542       679999999987 5665 4


Q ss_pred             cEEEec
Q 037818          193 DAIFMK  198 (199)
Q Consensus       193 D~~~l~  198 (199)
                      |+++..
T Consensus       131 D~Iv~~  136 (376)
T 3r0q_C          131 DVIISE  136 (376)
T ss_dssp             EEEEEC
T ss_pred             eEEEEc
Confidence            998863

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=97.94  E-value=7.6e-06  Score=63.28  Aligned_cols=64  Identities=20%  Similarity=0.156  Sum_probs=51.7

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC-CCCcc-cEEEec
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK-SIPAA-DAIFMK  198 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~-~~P~a-D~~~l~  198 (199)
                      ...+|||||||+|.++..+++..  .+ ++.+|. |..++.+++.     .+++++.+|+.+ +.+.. |++++.
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~~--~~-~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~  108 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPKF--KN-TWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCC  108 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGS--SE-EEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEEC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHCC--Cc-EEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEc
Confidence            45799999999999999999984  56 889998 7777777653     289999999986 45543 999875

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=97.94  E-value=1.1e-05  Score=66.15  Aligned_cols=76  Identities=16%  Similarity=0.156  Sum_probs=57.8

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHH-CCCCCeeeeccc-hHHHhcCCC-----------------CCCceEE
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQK-HRFICEGINFDL-PEVVGEAPS-----------------ILGVTHI  181 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~-~P~l~~~~v~Dl-p~v~~~a~~-----------------~~ri~~~  181 (199)
                      ..++..++ .....+|||||||+|.++..+++. .|+.+ ++.+|. |..++.|++                 .+++++.
T Consensus        95 ~~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~  172 (336)
T 2b25_A           95 NMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGR-VISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI  172 (336)
T ss_dssp             HHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCE-EEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred             HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEE
Confidence            34555555 666689999999999999999998 58889 999998 666666654                 2589999


Q ss_pred             eCCCCCC---CCc--ccEEEec
Q 037818          182 GGDTFKS---IPA--ADAIFMK  198 (199)
Q Consensus       182 ~gd~f~~---~P~--aD~~~l~  198 (199)
                      .+|+.+.   ++.  .|++++.
T Consensus       173 ~~d~~~~~~~~~~~~fD~V~~~  194 (336)
T 2b25_A          173 HKDISGATEDIKSLTFDAVALD  194 (336)
T ss_dssp             ESCTTCCC-------EEEEEEC
T ss_pred             ECChHHcccccCCCCeeEEEEC
Confidence            9999873   444  3998863

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=97.94  E-value=1.3e-05  Score=63.36  Aligned_cols=68  Identities=24%  Similarity=0.325  Sum_probs=53.4

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC--CCceEEeCCCCC-CCCc
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI--LGVTHIGGDTFK-SIPA  191 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~--~ri~~~~gd~f~-~~P~  191 (199)
                      ..+++..+ .....+|+|||||+|.++..++++ +..+ ++.+|+ |..++.++++  ++++++.+|+.+ ++|.
T Consensus        21 ~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~-~~~~-v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~   92 (249)
T 3ftd_A           21 KKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQH-PLKK-LYVIELDREMVENLKSIGDERLEVINEDASKFPFCS   92 (249)
T ss_dssp             HHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTS-CCSE-EEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGG
T ss_pred             HHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHc-CCCe-EEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhH
Confidence            45566666 666689999999999999999987 5567 899997 5666666654  689999999997 5554

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=97.94  E-value=1.9e-06  Score=65.37  Aligned_cols=65  Identities=15%  Similarity=0.151  Sum_probs=51.1

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc--ccEEEec
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA--ADAIFMK  198 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~--aD~~~l~  198 (199)
                      ....+|+|||||+|-++..+....|+.+ .+.+|. +..++.++++       .++++  .|..+..|.  .|++++-
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~-~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~  122 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKII-YHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLL  122 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCCE-EEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCCE-EEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHh
Confidence            3467999999999999999999999998 999997 6777777653       25666  777764443  4998763

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=97.94  E-value=2.5e-06  Score=65.70  Aligned_cols=67  Identities=12%  Similarity=0.216  Sum_probs=53.6

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC---CCC-----c-c
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK---SIP-----A-A  192 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~---~~P-----~-a  192 (199)
                      .+..+|||||||+|..+..++++.| +.+ ++.+|. |..++.++++       +||+++.+|..+   .++     . .
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f  135 (221)
T 3u81_A           57 YSPSLVLELGAYCGYSAVRMARLLQPGAR-LLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL  135 (221)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTSCTTCE-EEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCE-EEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence            3457999999999999999999875 778 999998 7778877752       589999999854   233     2 4


Q ss_pred             cEEEec
Q 037818          193 DAIFMK  198 (199)
Q Consensus       193 D~~~l~  198 (199)
                      |++++.
T Consensus       136 D~V~~d  141 (221)
T 3u81_A          136 DMVFLD  141 (221)
T ss_dssp             SEEEEC
T ss_pred             EEEEEc
Confidence            998864

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=97.93  E-value=6e-06  Score=64.72  Aligned_cols=50  Identities=20%  Similarity=0.089  Sum_probs=40.0

Q ss_pred             HhhhCCCCCCcceEEEecCCccHHHHHHHHH--CCCCCeeeeccc-hHHHhcCCC
Q 037818          123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQK--HRFICEGINFDL-PEVVGEAPS  174 (199)
Q Consensus       123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~--~P~l~~~~v~Dl-p~v~~~a~~  174 (199)
                      +++.++ -....+|+|+|||+|.++..+++.  +|..+ ++.+|. |..++.|++
T Consensus        43 ~l~~~~-~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~-v~gvDis~~~l~~A~~   95 (250)
T 1o9g_A           43 ALARLP-GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQ-VIASDVDPAPLELAAK   95 (250)
T ss_dssp             HHHTSS-CCSCEEEEETTCTTSHHHHHHHHHTGGGEEE-EEEEESCHHHHHHHHH
T ss_pred             HHHhcc-cCCCCeEEECCCCCCHHHHHHHHHhccCCCe-EEEEECCHHHHHHHHH
Confidence            334433 234579999999999999999998  88888 999998 788877764

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=97.93  E-value=4.6e-06  Score=61.91  Aligned_cols=72  Identities=18%  Similarity=0.123  Sum_probs=55.9

Q ss_pred             HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCC---c
Q 037818          123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIP---A  191 (199)
Q Consensus       123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P---~  191 (199)
                      +++.++ .....+|||+|||+|.++..+++..  .+ ++.+|. |..++.++++       +++++..+|+.+++|   .
T Consensus        25 ~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~--~~-v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  100 (192)
T 1l3i_A           25 IMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RR-VYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD  100 (192)
T ss_dssp             HHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SE-EEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred             HHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc--CE-EEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCC
Confidence            334444 5566899999999999999999988  67 999998 7777777642       689999999876444   2


Q ss_pred             ccEEEec
Q 037818          192 ADAIFMK  198 (199)
Q Consensus       192 aD~~~l~  198 (199)
                      .|++++.
T Consensus       101 ~D~v~~~  107 (192)
T 1l3i_A          101 IDIAVVG  107 (192)
T ss_dssp             EEEEEES
T ss_pred             CCEEEEC
Confidence            4988864

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=97.91  E-value=2.4e-05  Score=57.01  Aligned_cols=71  Identities=20%  Similarity=0.249  Sum_probs=54.1

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccchHHHhcCCCCCCceEEeCCCCC-C--------CCc
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDLPEVVGEAPSILGVTHIGGDTFK-S--------IPA  191 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dlp~v~~~a~~~~ri~~~~gd~f~-~--------~P~  191 (199)
                      .+.+.+.......+|||||||+|.++..+++.+ |+.+ ++.+|..+ ..   +.+++++..+|+.+ +        +|.
T Consensus        12 ~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~-v~~~D~~~-~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~   86 (180)
T 1ej0_A           12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGR-IIACDLLP-MD---PIVGVDFLQGDFRDELVMKALLERVGD   86 (180)
T ss_dssp             HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCE-EEEEESSC-CC---CCTTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred             HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCe-EEEEECcc-cc---ccCcEEEEEcccccchhhhhhhccCCC
Confidence            344444323455799999999999999999995 7788 99999876 22   23789999999987 3        554


Q ss_pred             --ccEEEe
Q 037818          192 --ADAIFM  197 (199)
Q Consensus       192 --aD~~~l  197 (199)
                        .|+++.
T Consensus        87 ~~~D~i~~   94 (180)
T 1ej0_A           87 SKVQVVMS   94 (180)
T ss_dssp             CCEEEEEE
T ss_pred             CceeEEEE
Confidence              398886

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=97.91  E-value=1.9e-05  Score=67.13  Aligned_cols=76  Identities=14%  Similarity=0.315  Sum_probs=56.3

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcC-------CC--------CCCceEEeCC
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEA-------PS--------ILGVTHIGGD  184 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a-------~~--------~~ri~~~~gd  184 (199)
                      ..+++.++ .....+|||||||+|.++..+++.+|..+ ++.+|+ |..++.|       ++        .++|+++.+|
T Consensus       232 ~~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~-V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD  309 (433)
T 1u2z_A          232 SDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCAL-SFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK  309 (433)
T ss_dssp             HHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSE-EEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred             HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCCCE-EEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcC
Confidence            34556665 66778999999999999999999999888 999998 4445555       32        2689999875


Q ss_pred             CC-CC--C----CcccEEEec
Q 037818          185 TF-KS--I----PAADAIFMK  198 (199)
Q Consensus       185 ~f-~~--~----P~aD~~~l~  198 (199)
                      -+ .+  +    ...|+|++.
T Consensus       310 ~~~~~~~~~~~~~~FDvIvvn  330 (433)
T 1u2z_A          310 SFVDNNRVAELIPQCDVILVN  330 (433)
T ss_dssp             CSTTCHHHHHHGGGCSEEEEC
T ss_pred             ccccccccccccCCCCEEEEe
Confidence            44 32  2    225999874

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=97.91  E-value=6.7e-06  Score=68.62  Aligned_cols=68  Identities=15%  Similarity=-0.025  Sum_probs=56.7

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC-CCCc--ccEEEec
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK-SIPA--ADAIFMK  198 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~-~~P~--aD~~~l~  198 (199)
                      |....+|+|+|||+|.++..+++..+..+ ++.+|. |..++.|+++       ++|+++.+|+.+ +.|.  .|+++.+
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~-v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~n  293 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYSGE-IIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISN  293 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCCSC-EEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEE
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEEC
Confidence            55668999999999999999999999878 999997 7778877753       589999999997 5543  3998873

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=97.90  E-value=7.4e-06  Score=65.37  Aligned_cols=68  Identities=15%  Similarity=0.019  Sum_probs=56.3

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCC-CCc-ccEEEec
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKS-IPA-ADAIFMK  198 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~-~P~-aD~~~l~  198 (199)
                      +....+|+|+|||+|.++..++++.+..+ ++.+|. |..++.++++      ++++++.+|.++. .+. .|++++.
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~-V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d  193 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKL-VYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMG  193 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSE-EEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEEC
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEEC
Confidence            45568999999999999999999999888 999998 7888877752      5789999999875 222 4998874

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=97.90  E-value=9.7e-06  Score=62.93  Aligned_cols=56  Identities=13%  Similarity=0.028  Sum_probs=45.7

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccch-HHH-hc---CCCC------CCceEEeCCCCC
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP-EVV-GE---APSI------LGVTHIGGDTFK  187 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp-~v~-~~---a~~~------~ri~~~~gd~f~  187 (199)
                      ....+|||||||+|.++..+++++|..+ ++.+|+- +.+ +.   |++.      ++++++.+|..+
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~-v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~   89 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTF-YIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAES   89 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEE-EEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTB
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHH
Confidence            3457999999999999999999999999 9999985 444 33   3542      679999999865

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=97.90  E-value=2.2e-05  Score=66.02  Aligned_cols=72  Identities=14%  Similarity=0.092  Sum_probs=55.9

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCCCCCceEEeCCCCCCCCc--ccEEEe
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPSILGVTHIGGDTFKSIPA--ADAIFM  197 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~~~ri~~~~gd~f~~~P~--aD~~~l  197 (199)
                      .+++.++ .....+|+|+|||+|.++..+++++ +..+ ++.+|+ |..++.|   .+++++.+|+++..+.  .|+++.
T Consensus        30 ~~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~-i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~  104 (421)
T 2ih2_A           30 FMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYR-FVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILG  104 (421)
T ss_dssp             HHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSE-EEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEE
T ss_pred             HHHHhhc-cCCCCEEEECCCCChHHHHHHHHHhCCCCe-EEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEE
Confidence            3444444 3344699999999999999999988 6778 999998 5666666   7899999999985443  399987


Q ss_pred             c
Q 037818          198 K  198 (199)
Q Consensus       198 ~  198 (199)
                      +
T Consensus       105 N  105 (421)
T 2ih2_A          105 N  105 (421)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=97.90  E-value=1.4e-05  Score=67.17  Aligned_cols=77  Identities=8%  Similarity=-0.082  Sum_probs=60.0

Q ss_pred             HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCC--------------------------------------CCeee
Q 037818          120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRF--------------------------------------ICEGI  161 (199)
Q Consensus       120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~--------------------------------------l~~~~  161 (199)
                      +..++.... |.....|+|.+||+|.++++.+....+                                      .+ ++
T Consensus       190 Aa~ll~l~~-~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~-V~  267 (393)
T 3k0b_A          190 AAALVLLTS-WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLN-II  267 (393)
T ss_dssp             HHHHHHHSC-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC-EE
T ss_pred             HHHHHHHhC-CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCce-EE
Confidence            345566666 888889999999999999988876554                                      56 89


Q ss_pred             eccc-hHHHhcCCCC-------CCceEEeCCCCC-CCCc-ccEEEec
Q 037818          162 NFDL-PEVVGEAPSI-------LGVTHIGGDTFK-SIPA-ADAIFMK  198 (199)
Q Consensus       162 v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~-~~P~-aD~~~l~  198 (199)
                      .+|. |..++.|+++       ++|+++.+|+++ +.|. .|+++++
T Consensus       268 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~N  314 (393)
T 3k0b_A          268 GGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVAN  314 (393)
T ss_dssp             EEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEEC
T ss_pred             EEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEEC
Confidence            9997 7788877753       579999999997 3444 4998875

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=97.90  E-value=1.6e-05  Score=63.26  Aligned_cols=65  Identities=17%  Similarity=0.057  Sum_probs=53.1

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC----------CCceEEeCCCCCCCCcccEEEec
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI----------LGVTHIGGDTFKSIPAADAIFMK  198 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~----------~ri~~~~gd~f~~~P~aD~~~l~  198 (199)
                      .+.++|||||||+|..++++++. + .+ ++.+|+ |.+++.|+++          +|++++.+|.++.+..-|+|++.
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~-~-~~-v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d  146 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKY-D-TH-IDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCL  146 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTS-S-CE-EEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEES
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhC-C-CE-EEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEEC
Confidence            34579999999999999999998 7 77 999997 7888888753          58999999998744123988763

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=97.90  E-value=1.5e-05  Score=61.38  Aligned_cols=74  Identities=14%  Similarity=0.180  Sum_probs=56.9

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC----CCceEEeCCCCCCCCc---c
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI----LGVTHIGGDTFKSIPA---A  192 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~----~ri~~~~gd~f~~~P~---a  192 (199)
                      ..+++.+. .....+|||||||+|.++..+++..  .+ ++.+|. |..++.+++.    .+++++.+|+.+..|.   .
T Consensus        60 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~--~~-v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~f  135 (231)
T 1vbf_A           60 IFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DK-VVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPY  135 (231)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SE-EEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCE
T ss_pred             HHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHc--CE-EEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCc
Confidence            34555555 5666899999999999999999987  56 889997 6777776643    3899999999875442   3


Q ss_pred             cEEEec
Q 037818          193 DAIFMK  198 (199)
Q Consensus       193 D~~~l~  198 (199)
                      |++++.
T Consensus       136 D~v~~~  141 (231)
T 1vbf_A          136 DRVVVW  141 (231)
T ss_dssp             EEEEES
T ss_pred             cEEEEC
Confidence            988864

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=97.89  E-value=1.3e-05  Score=65.17  Aligned_cols=75  Identities=15%  Similarity=0.227  Sum_probs=58.5

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCC-CCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCC-c-
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIP-A-  191 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P-~-  191 (199)
                      .+++.++ .....+|||||||+|.++..+++..+. .+ ++.+|+ |+.++.++++      ++++++.+|+.+..| . 
T Consensus        66 ~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~-v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~  143 (317)
T 1dl5_A           66 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGL-VVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS  143 (317)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred             HHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCC
Confidence            4555555 566689999999999999999999984 77 999997 7777777642      569999999987433 2 


Q ss_pred             -ccEEEec
Q 037818          192 -ADAIFMK  198 (199)
Q Consensus       192 -aD~~~l~  198 (199)
                       .|+++..
T Consensus       144 ~fD~Iv~~  151 (317)
T 1dl5_A          144 PYDVIFVT  151 (317)
T ss_dssp             CEEEEEEC
T ss_pred             CeEEEEEc
Confidence             3988864

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=97.88  E-value=9.1e-06  Score=64.24  Aligned_cols=64  Identities=6%  Similarity=-0.065  Sum_probs=49.6

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-----------------------CCCceEEeCCCCC
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-----------------------ILGVTHIGGDTFK  187 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-----------------------~~ri~~~~gd~f~  187 (199)
                      ...+|||||||+|..+..|++.  ..+ ++.+|+ |..++.|++                       ..+|+++.+|+++
T Consensus        68 ~~~~vLD~GCG~G~~~~~La~~--G~~-V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~  144 (252)
T 2gb4_A           68 SGLRVFFPLCGKAIEMKWFADR--GHT-VVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD  144 (252)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHT--TCE-EEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred             CCCeEEEeCCCCcHHHHHHHHC--CCe-EEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence            4579999999999999999987  457 999997 566665531                       2579999999997


Q ss_pred             -CCC--c-ccEEEec
Q 037818          188 -SIP--A-ADAIFMK  198 (199)
Q Consensus       188 -~~P--~-aD~~~l~  198 (199)
                       +.+  . -|+|+.+
T Consensus       145 l~~~~~~~FD~V~~~  159 (252)
T 2gb4_A          145 LPRANIGKFDRIWDR  159 (252)
T ss_dssp             GGGGCCCCEEEEEES
T ss_pred             CCcccCCCEEEEEEh
Confidence             433  2 3998753

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=97.88  E-value=9.4e-06  Score=64.71  Aligned_cols=73  Identities=15%  Similarity=0.077  Sum_probs=55.9

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC-CCCc-cc
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK-SIPA-AD  193 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~-~~P~-aD  193 (199)
                      .+++.++ .....+|||||||+|.++..+++.  ..+ ++.+|. |..++.+++.     -+++++.+|+.+ +.+. .|
T Consensus       111 ~~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~--g~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD  186 (286)
T 3m70_A          111 DVVDAAK-IISPCKVLDLGCGQGRNSLYLSLL--GYD-VTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYD  186 (286)
T ss_dssp             HHHHHHH-HSCSCEEEEESCTTCHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEE
T ss_pred             HHHHHhh-ccCCCcEEEECCCCCHHHHHHHHC--CCe-EEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCcc
Confidence            4445444 345689999999999999999998  557 999997 6777776642     289999999997 3444 39


Q ss_pred             EEEec
Q 037818          194 AIFMK  198 (199)
Q Consensus       194 ~~~l~  198 (199)
                      ++++.
T Consensus       187 ~i~~~  191 (286)
T 3m70_A          187 FIVST  191 (286)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            99874

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=97.87  E-value=9.8e-06  Score=67.76  Aligned_cols=62  Identities=21%  Similarity=0.177  Sum_probs=49.4

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCC-------CCCceEEeCCCCC-CCCc-ccEEEe
Q 037818          134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPS-------ILGVTHIGGDTFK-SIPA-ADAIFM  197 (199)
Q Consensus       134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~-------~~ri~~~~gd~f~-~~P~-aD~~~l  197 (199)
                      ++|||||||+|.++...+++.. -+ ++.+|..+.++.|++       .++|+++.+|+.+ ++|+ .|+++-
T Consensus        85 k~VLDvG~GtGiLs~~Aa~aGA-~~-V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~Dvivs  155 (376)
T 4hc4_A           85 KTVLDVGAGTGILSIFCAQAGA-RR-VYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVS  155 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTC-SE-EEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEEC
T ss_pred             CEEEEeCCCccHHHHHHHHhCC-CE-EEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEe
Confidence            7999999999999887777643 35 888998766666654       2789999999987 6887 599874

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=97.87  E-value=4.1e-06  Score=66.18  Aligned_cols=65  Identities=15%  Similarity=0.200  Sum_probs=51.5

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC---C--CceEEeCCCCCCCCc--ccEEEec
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI---L--GVTHIGGDTFKSIPA--ADAIFMK  198 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~---~--ri~~~~gd~f~~~P~--aD~~~l~  198 (199)
                      ....+|+|||||+|.++..+++..+  + ++.+|. |..++.++++   .  .+++..+|+.+.+|.  .|+++.+
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~g~--~-v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n  191 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKLGG--K-ALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVAN  191 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC--E-EEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEE
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhCC--e-EEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEEC
Confidence            3457999999999999999999877  7 999998 7777777653   1  189999999875544  3988864

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=97.86  E-value=1.4e-05  Score=67.13  Aligned_cols=77  Identities=16%  Similarity=0.030  Sum_probs=59.8

Q ss_pred             HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCC--------------------------------------CCeee
Q 037818          120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRF--------------------------------------ICEGI  161 (199)
Q Consensus       120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~--------------------------------------l~~~~  161 (199)
                      +..++.... |.....|+|++||+|.++++++..-.+                                      .+ ++
T Consensus       184 Aa~ll~~~~-~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~-V~  261 (385)
T 3ldu_A          184 AAGLIYLTP-WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFK-IY  261 (385)
T ss_dssp             HHHHHHTSC-CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCC-EE
T ss_pred             HHHHHHhhC-CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCce-EE
Confidence            345556566 887899999999999999998876433                                      57 89


Q ss_pred             eccc-hHHHhcCCCC-------CCceEEeCCCCC-CCCc-ccEEEec
Q 037818          162 NFDL-PEVVGEAPSI-------LGVTHIGGDTFK-SIPA-ADAIFMK  198 (199)
Q Consensus       162 v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~-~~P~-aD~~~l~  198 (199)
                      .+|. |.+++.|+++       ++|++..+|+++ +.|. .|+++++
T Consensus       262 GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~N  308 (385)
T 3ldu_A          262 GYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITN  308 (385)
T ss_dssp             EEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEEC
T ss_pred             EEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEEC
Confidence            9997 7888888763       479999999997 3444 4998874

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=97.86  E-value=5.8e-06  Score=64.29  Aligned_cols=65  Identities=15%  Similarity=0.137  Sum_probs=52.0

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC-CCCc--ccEEEec
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK-SIPA--ADAIFMK  198 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~-~~P~--aD~~~l~  198 (199)
                      ...+|||||||+|.++..++++. ..+ ++.+|. |..++.+++.      .+++++.+|+.+ +.+.  .|+|++.
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~  153 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL-FRE-VDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQ  153 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-CSE-EEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCE-EEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEc
Confidence            46899999999999999999887 557 899997 7777777642      368999999876 4444  3999875

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=97.86  E-value=5.9e-06  Score=68.05  Aligned_cols=67  Identities=19%  Similarity=0.222  Sum_probs=54.7

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----------CCCceEEeCCCCC---CCCc--ccE
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----------ILGVTHIGGDTFK---SIPA--ADA  194 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----------~~ri~~~~gd~f~---~~P~--aD~  194 (199)
                      .+..+|||||||+|.+++.+++..|..+ ++.+|+ |.+++.|++          .+|++++.+|.++   ..+.  -|+
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~-V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl  197 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQ-IDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA  197 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCE-EEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence            4568999999999999999999888888 999998 777777764          2689999999875   2343  399


Q ss_pred             EEec
Q 037818          195 IFMK  198 (199)
Q Consensus       195 ~~l~  198 (199)
                      |++.
T Consensus       198 Ii~d  201 (334)
T 1xj5_A          198 VIVD  201 (334)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9863

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=97.85  E-value=6.7e-06  Score=66.59  Aligned_cols=73  Identities=16%  Similarity=0.259  Sum_probs=51.7

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC------CCCceEEeCCCCC-CCCcc
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS------ILGVTHIGGDTFK-SIPAA  192 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~------~~ri~~~~gd~f~-~~P~a  192 (199)
                      ..+++..+ .....+|||||||+|.++..++++.  .+ ++.+|. |..++.+++      .++++++.+|+.+ +.+..
T Consensus        32 ~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~~--~~-v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~  107 (299)
T 2h1r_A           32 DKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPLA--KK-VITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKF  107 (299)
T ss_dssp             HHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTTS--SE-EEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCC
T ss_pred             HHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhcC--CE-EEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccC
Confidence            34555555 5666899999999999999999873  46 889998 666666553      2689999999987 45555


Q ss_pred             cEEEe
Q 037818          193 DAIFM  197 (199)
Q Consensus       193 D~~~l  197 (199)
                      |+++.
T Consensus       108 D~Vv~  112 (299)
T 2h1r_A          108 DVCTA  112 (299)
T ss_dssp             SEEEE
T ss_pred             CEEEE
Confidence            88876

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=97.85  E-value=1.9e-05  Score=60.77  Aligned_cols=67  Identities=15%  Similarity=0.115  Sum_probs=53.8

Q ss_pred             CCCcceEEEecCC-ccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCC--CCCCCc--ccEEEec
Q 037818          130 FKGVKQLVDVGGS-AGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDT--FKSIPA--ADAIFMK  198 (199)
Q Consensus       130 ~~~~~~vvDvGGG-~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~--f~~~P~--aD~~~l~  198 (199)
                      .....+||||||| +|.++..+++.. ..+ ++.+|. |..++.++++     .+++++.+|.  +.++|.  .|++++.
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~n  130 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFF-NCK-VTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSA  130 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHH-CCE-EEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEEC
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhc-CCE-EEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEEC
Confidence            3556899999999 999999999987 677 999998 7777777643     3799999996  456664  3998864

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=97.85  E-value=5.5e-06  Score=66.56  Aligned_cols=68  Identities=10%  Similarity=0.160  Sum_probs=53.2

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCC--CCeeeeccc-hHHHhcCCCC--CCceEEeCCCCC-CCCc
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRF--ICEGINFDL-PEVVGEAPSI--LGVTHIGGDTFK-SIPA  191 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~--l~~~~v~Dl-p~v~~~a~~~--~ri~~~~gd~f~-~~P~  191 (199)
                      .+++..+ .....+|||||||+|.++..++++.+.  .+ ++.+|+ |..++.+++.  ++++++.+|+++ +++.
T Consensus        33 ~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~-V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~~  106 (279)
T 3uzu_A           33 AIVAAIR-PERGERMVEIGPGLGALTGPVIARLATPGSP-LHAVELDRDLIGRLEQRFGELLELHAGDALTFDFGS  106 (279)
T ss_dssp             HHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBTTBC-EEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGGG
T ss_pred             HHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCcCCe-EEEEECCHHHHHHHHHhcCCCcEEEECChhcCChhH
Confidence            4555555 566689999999999999999998876  66 888897 5666666553  789999999987 4543

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=97.84  E-value=3.1e-06  Score=66.46  Aligned_cols=67  Identities=15%  Similarity=0.108  Sum_probs=53.3

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCC---C-----Cc-c
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKS---I-----PA-A  192 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~---~-----P~-a  192 (199)
                      .+..+|||||||+|..+..+++..| +.+ ++.+|. |..++.|+++       +||+++.||..+.   +     +. .
T Consensus        59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~f  137 (242)
T 3r3h_A           59 TRAKKVLELGTFTGYSALAMSLALPDDGQ-VITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQF  137 (242)
T ss_dssp             HTCSEEEEEESCCSHHHHHHHHTSCTTCE-EEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCE
T ss_pred             cCcCEEEEeeCCcCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCE
Confidence            3457999999999999999999997 778 999997 6667666642       6999999999763   2     23 3


Q ss_pred             cEEEec
Q 037818          193 DAIFMK  198 (199)
Q Consensus       193 D~~~l~  198 (199)
                      |++++.
T Consensus       138 D~V~~d  143 (242)
T 3r3h_A          138 DFIFID  143 (242)
T ss_dssp             EEEEEE
T ss_pred             eEEEEc
Confidence            988863

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=97.84  E-value=5.3e-06  Score=67.92  Aligned_cols=66  Identities=18%  Similarity=0.143  Sum_probs=53.3

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----------CCCceEEeCCCCCCC---Cc-ccEEE
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----------ILGVTHIGGDTFKSI---PA-ADAIF  196 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----------~~ri~~~~gd~f~~~---P~-aD~~~  196 (199)
                      +..+|||||||+|.+++.+++..|..+ ++.+|. |.+++.+++          .+|++++.+|.++.+   +. -|+|+
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi  194 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVEN-IDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  194 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCE-EEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence            457999999999999999999888888 999998 777777653          268999999987632   33 39988


Q ss_pred             ec
Q 037818          197 MK  198 (199)
Q Consensus       197 l~  198 (199)
                      +.
T Consensus       195 ~d  196 (321)
T 2pt6_A          195 VD  196 (321)
T ss_dssp             EE
T ss_pred             EC
Confidence            63

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=97.84  E-value=4.1e-06  Score=64.55  Aligned_cols=67  Identities=7%  Similarity=-0.003  Sum_probs=53.8

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCC---CC-----c-c
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKS---IP-----A-A  192 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~---~P-----~-a  192 (199)
                      .+..+|||||||+|..+..+++..| ..+ ++.+|. |..++.++++       ++|+++.+|.++.   ++     . .
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~  146 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALPADGR-VVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF  146 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCE-EEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence            4557999999999999999999988 677 999998 7777777642       6899999998753   21     3 3


Q ss_pred             cEEEec
Q 037818          193 DAIFMK  198 (199)
Q Consensus       193 D~~~l~  198 (199)
                      |++++.
T Consensus       147 D~v~~d  152 (229)
T 2avd_A          147 DVAVVD  152 (229)
T ss_dssp             EEEEEC
T ss_pred             cEEEEC
Confidence            888764

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=97.84  E-value=4.4e-06  Score=64.91  Aligned_cols=65  Identities=12%  Similarity=0.021  Sum_probs=50.3

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC---CCCc--ccEEEe
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK---SIPA--ADAIFM  197 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~---~~P~--aD~~~l  197 (199)
                      ....+|||||||+|.++..+++..+. + ++.+|. |..++.+++.     .+++++.+|+.+   ++|.  .|+|+.
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~~~-~-v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~  134 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAPID-E-HWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILY  134 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEE-E-EEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcCCC-e-EEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEE
Confidence            34579999999999999999765553 7 899997 6777766542     679999999875   4665  399876

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=97.84  E-value=1.3e-05  Score=65.09  Aligned_cols=65  Identities=20%  Similarity=0.093  Sum_probs=52.8

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK  187 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~  187 (199)
                      ..+++.++ .....+|||+|||+|.++..+++++|..+ ++.+|. |..++.|+++     +|++++.+||.+
T Consensus        16 ~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~-VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~   86 (301)
T 1m6y_A           16 REVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCR-IIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYRE   86 (301)
T ss_dssp             HHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGG
T ss_pred             HHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCE-EEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHH
Confidence            34455555 55567999999999999999999999888 999997 7777777642     689999999764

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=97.84  E-value=6.1e-06  Score=62.96  Aligned_cols=73  Identities=16%  Similarity=0.066  Sum_probs=55.5

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCCCCceEEeCCCCCC-----CCc--cc
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSILGVTHIGGDTFKS-----IPA--AD  193 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~~ri~~~~gd~f~~-----~P~--aD  193 (199)
                      .+++.+. .....+|||||||+|.++..+++.  ..+ ++.+|. |..++.+++..++++..+|+.+-     .+.  .|
T Consensus        43 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD  118 (227)
T 3e8s_A           43 AILLAIL-GRQPERVLDLGCGEGWLLRALADR--GIE-AVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYD  118 (227)
T ss_dssp             HHHHHHH-HTCCSEEEEETCTTCHHHHHHHTT--TCE-EEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEE
T ss_pred             HHHHHhh-cCCCCEEEEeCCCCCHHHHHHHHC--CCE-EEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCcc
Confidence            3444443 334489999999999999999988  557 899998 77888888778899999888742     222  39


Q ss_pred             EEEec
Q 037818          194 AIFMK  198 (199)
Q Consensus       194 ~~~l~  198 (199)
                      ++++.
T Consensus       119 ~v~~~  123 (227)
T 3e8s_A          119 LICAN  123 (227)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            88864

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=97.84  E-value=5.1e-06  Score=67.42  Aligned_cols=66  Identities=21%  Similarity=0.281  Sum_probs=53.7

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----------CCCceEEeCCCCCC---CCc-c-cE
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----------ILGVTHIGGDTFKS---IPA-A-DA  194 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----------~~ri~~~~gd~f~~---~P~-a-D~  194 (199)
                      .+..+|||||||+|.+++.+++..|..+ ++.+|+ |.+++.+++          .+|++++.+|.++.   .+. . |+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDv  172 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEH-CDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDV  172 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCE-EEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeE
Confidence            4558999999999999999999878888 999998 777777653          27899999999862   133 3 99


Q ss_pred             EEe
Q 037818          195 IFM  197 (199)
Q Consensus       195 ~~l  197 (199)
                      |++
T Consensus       173 Ii~  175 (304)
T 3bwc_A          173 VII  175 (304)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            886

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=97.83  E-value=6.6e-06  Score=64.08  Aligned_cols=56  Identities=14%  Similarity=0.071  Sum_probs=47.3

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK  187 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~  187 (199)
                      ....+|||||||+|..+..+++..| ..+ ++.+|. |..++.++++       ++|+++.+|..+
T Consensus        59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~  123 (239)
T 2hnk_A           59 SGAKRIIEIGTFTGYSSLCFASALPEDGK-ILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALE  123 (239)
T ss_dssp             HTCSEEEEECCTTCHHHHHHHHHSCTTCE-EEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred             hCcCEEEEEeCCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHH
Confidence            3457999999999999999999998 677 999998 7777777642       569999999875

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=97.83  E-value=7.5e-06  Score=66.53  Aligned_cols=67  Identities=18%  Similarity=0.293  Sum_probs=54.2

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----------CCCceEEeCCCCCC--C-Cc-ccE
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----------ILGVTHIGGDTFKS--I-PA-ADA  194 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----------~~ri~~~~gd~f~~--~-P~-aD~  194 (199)
                      ..+.++|||||||+|.+++.+++..|..+ ++.+|+ |.+++.+++          .+|++++.+|.++.  . +. -|+
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~  171 (304)
T 2o07_A           93 HPNPRKVLIIGGGDGGVLREVVKHPSVES-VVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDV  171 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCE-EEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEE
T ss_pred             CCCCCEEEEECCCchHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceE
Confidence            34568999999999999999999988888 999998 777777653          37899999998752  2 23 399


Q ss_pred             EEe
Q 037818          195 IFM  197 (199)
Q Consensus       195 ~~l  197 (199)
                      |++
T Consensus       172 Ii~  174 (304)
T 2o07_A          172 IIT  174 (304)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            886

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=97.83  E-value=4e-06  Score=63.92  Aligned_cols=65  Identities=18%  Similarity=0.103  Sum_probs=52.7

Q ss_pred             CcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCC--c-ccEEEe
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIP--A-ADAIFM  197 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P--~-aD~~~l  197 (199)
                      +..+|||||||+|..+..+++..| +.+ ++.+|. |..++.++++       +||+++.+|..+.+|  . .|++++
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~  132 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSR-VVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFM  132 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCE-EEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEE
Confidence            457999999999999999999998 777 999998 7777777642       589999999975322  2 488775

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=97.82  E-value=2.2e-05  Score=65.78  Aligned_cols=77  Identities=13%  Similarity=-0.057  Sum_probs=59.8

Q ss_pred             HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCC--------------------------------------CCeee
Q 037818          120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRF--------------------------------------ICEGI  161 (199)
Q Consensus       120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~--------------------------------------l~~~~  161 (199)
                      +..++.... |.....|+|.+||+|.++++.+....+                                      .+ ++
T Consensus       183 Aaall~l~~-~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~-v~  260 (384)
T 3ldg_A          183 AAAIILLSN-WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLD-IS  260 (384)
T ss_dssp             HHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC-EE
T ss_pred             HHHHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCce-EE
Confidence            345566665 888899999999999999988876554                                      56 89


Q ss_pred             eccc-hHHHhcCCCC-------CCceEEeCCCCC-CCCc-ccEEEec
Q 037818          162 NFDL-PEVVGEAPSI-------LGVTHIGGDTFK-SIPA-ADAIFMK  198 (199)
Q Consensus       162 v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~-~~P~-aD~~~l~  198 (199)
                      .+|. |..++.|+++       ++|+++.+|+++ +.|. .|+++++
T Consensus       261 GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~N  307 (384)
T 3ldg_A          261 GFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISN  307 (384)
T ss_dssp             EEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEEC
T ss_pred             EEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEEC
Confidence            9997 7778877753       579999999997 3444 4998874

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=97.82  E-value=1.9e-05  Score=59.81  Aligned_cols=65  Identities=18%  Similarity=0.087  Sum_probs=51.2

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC----C-CceEEeCCCCCCCCc-ccEEEec
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI----L-GVTHIGGDTFKSIPA-ADAIFMK  198 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~----~-ri~~~~gd~f~~~P~-aD~~~l~  198 (199)
                      ....+|||+|||+|.++..+++..+ .+ ++.+|. |..++.++++    . +++++.+|+.+ +|. .|++++.
T Consensus        48 ~~~~~vlD~g~G~G~~~~~l~~~~~-~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~D~v~~~  119 (207)
T 1wy7_A           48 IEGKVVADLGAGTGVLSYGALLLGA-KE-VICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE-FNSRVDIVIMN  119 (207)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHTTC-SE-EEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG-CCCCCSEEEEC
T ss_pred             CCcCEEEEeeCCCCHHHHHHHHcCC-CE-EEEEECCHHHHHHHHHHHHHcCCCEEEEECchHH-cCCCCCEEEEc
Confidence            3457999999999999999998843 36 899998 7777777643    2 79999999987 344 4988864

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=97.81  E-value=8.9e-06  Score=64.98  Aligned_cols=73  Identities=14%  Similarity=0.067  Sum_probs=54.5

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----------CCCceEEeCCCCC-C-
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----------ILGVTHIGGDTFK-S-  188 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----------~~ri~~~~gd~f~-~-  188 (199)
                      .+.+.++ .....+|||||||+|.++..+++..+  + ++.+|+ |..++.+++          ..++.+..+|+.+ + 
T Consensus        48 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~  123 (293)
T 3thr_A           48 WLLGLLR-QHGCHRVLDVACGTGVDSIMLVEEGF--S-VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK  123 (293)
T ss_dssp             HHHHHHH-HTTCCEEEETTCTTSHHHHHHHHTTC--E-EEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH
T ss_pred             HHHHHhc-ccCCCEEEEecCCCCHHHHHHHHCCC--e-EEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCcc
Confidence            3444443 34557999999999999999999855  7 899997 667776643          1688999999986 4 


Q ss_pred             --CCc--ccEEEec
Q 037818          189 --IPA--ADAIFMK  198 (199)
Q Consensus       189 --~P~--aD~~~l~  198 (199)
                        ++.  .|+|++.
T Consensus       124 ~~~~~~~fD~V~~~  137 (293)
T 3thr_A          124 DVPAGDGFDAVICL  137 (293)
T ss_dssp             HSCCTTCEEEEEEC
T ss_pred             ccccCCCeEEEEEc
Confidence              444  3999864

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=97.81  E-value=6.9e-06  Score=62.45  Aligned_cols=64  Identities=13%  Similarity=0.088  Sum_probs=49.4

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC--------CCceEEeCCCCCCCC-----c-ccEEEe
Q 037818          133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI--------LGVTHIGGDTFKSIP-----A-ADAIFM  197 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~--------~ri~~~~gd~f~~~P-----~-aD~~~l  197 (199)
                      ..+|||+|||+|.++..++++.. .+ ++.+|. |..++.++++        ++++++.+|+++..+     . .|++++
T Consensus        54 ~~~vLDlGcGtG~~~~~~~~~~~-~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  131 (201)
T 2ift_A           54 QSECLDGFAGSGSLGFEALSRQA-KK-VTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL  131 (201)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTC-SE-EEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred             CCeEEEcCCccCHHHHHHHHccC-CE-EEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence            36999999999999999887754 46 899997 6777777642        589999999875221     3 488886


Q ss_pred             c
Q 037818          198 K  198 (199)
Q Consensus       198 ~  198 (199)
                      .
T Consensus       132 ~  132 (201)
T 2ift_A          132 D  132 (201)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=97.79  E-value=1.9e-05  Score=61.93  Aligned_cols=66  Identities=15%  Similarity=0.254  Sum_probs=53.6

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC----CCceEEeCCCCC-CCC
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI----LGVTHIGGDTFK-SIP  190 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~----~ri~~~~gd~f~-~~P  190 (199)
                      ..+++..+ .....+|||||||+|.++..++++.  .+ ++.+|. |..++.++++    ++++++.+|+.+ ++|
T Consensus        19 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~--~~-v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~   90 (245)
T 1yub_A           19 NQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQ-VTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFP   90 (245)
T ss_dssp             HHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SE-EEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCC
T ss_pred             HHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhC--Ce-EEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcc
Confidence            45566666 6666899999999999999999986  66 899998 6777777764    689999999987 555

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=97.78  E-value=7.8e-06  Score=66.13  Aligned_cols=65  Identities=18%  Similarity=0.231  Sum_probs=52.7

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----------CCCceEEeCCCCCCC---Cc-ccEEE
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----------ILGVTHIGGDTFKSI---PA-ADAIF  196 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----------~~ri~~~~gd~f~~~---P~-aD~~~  196 (199)
                      +..+|||||||+|.++..+++..|..+ ++.+|+ |.+++.+++          .+|++++.+|.++.+   +. .|+|+
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  168 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEK-AILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  168 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSE-EEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence            347999999999999999999888888 999998 777776653          368999999987532   23 39988


Q ss_pred             e
Q 037818          197 M  197 (199)
Q Consensus       197 l  197 (199)
                      +
T Consensus       169 ~  169 (296)
T 1inl_A          169 I  169 (296)
T ss_dssp             E
T ss_pred             E
Confidence            6

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=97.78  E-value=9.7e-06  Score=65.04  Aligned_cols=65  Identities=23%  Similarity=0.276  Sum_probs=51.5

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCC----------------CCCCceEEeCCCCCCC--Cc-
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAP----------------SILGVTHIGGDTFKSI--PA-  191 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~----------------~~~ri~~~~gd~f~~~--P~-  191 (199)
                      +..+|||||||+|.++..+++. |..+ ++.+|+ |.+++.++                ..+|++++.+|.++.+  +. 
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~-v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~  152 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQH-DVDE-VIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  152 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTS-CCSE-EEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCCeEEEEcCCcCHHHHHHHhC-CCCE-EEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence            4579999999999999999998 8888 999998 77776654                2368999999986522  33 


Q ss_pred             ccEEEec
Q 037818          192 ADAIFMK  198 (199)
Q Consensus       192 aD~~~l~  198 (199)
                      -|+|++.
T Consensus       153 fD~Ii~d  159 (281)
T 1mjf_A          153 FDVIIAD  159 (281)
T ss_dssp             EEEEEEE
T ss_pred             eeEEEEC
Confidence            3888763

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=97.78  E-value=1.1e-05  Score=63.08  Aligned_cols=67  Identities=16%  Similarity=0.104  Sum_probs=53.9

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCC---C------Cc-
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKS---I------PA-  191 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~---~------P~-  191 (199)
                      .+.++|||||||+|..+..++++.| +.+ .+.+|. |..++.++++       +||+++.+|.++.   +      +. 
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~  147 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGK-ITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGS  147 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCE-EEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTC
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCC
Confidence            4567999999999999999999998 777 999998 7777777642       5899999998752   2      23 


Q ss_pred             ccEEEec
Q 037818          192 ADAIFMK  198 (199)
Q Consensus       192 aD~~~l~  198 (199)
                      -|++++.
T Consensus       148 fD~I~~d  154 (237)
T 3c3y_A          148 YDFGFVD  154 (237)
T ss_dssp             EEEEEEC
T ss_pred             cCEEEEC
Confidence            3988863

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=97.78  E-value=5.9e-06  Score=64.20  Aligned_cols=64  Identities=20%  Similarity=0.190  Sum_probs=51.6

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc--ccEEEec
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA--ADAIFMK  198 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~--aD~~~l~  198 (199)
                      ...+|||||||+|.++..+++..  .+ ++.+|. |..++.++++       ++++++.+|+.+..+.  .|++++.
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~--~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~  151 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTG--MR-VIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLS  151 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTT--CE-EEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEEC
T ss_pred             CCCEEEECccccCHHHHHHHHcC--CE-EEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEEC
Confidence            45799999999999999999975  67 899997 6777777642       5899999999873333  4998864

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=97.78  E-value=9.6e-06  Score=60.73  Aligned_cols=65  Identities=11%  Similarity=0.004  Sum_probs=51.4

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCC---CCc--ccEEEec
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKS---IPA--ADAIFMK  198 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~---~P~--aD~~~l~  198 (199)
                      ...+|||+|||+|.++..+++. +..+ ++.+|. |..++.++++      ++++++.+|+.+.   ++.  .|++++.
T Consensus        44 ~~~~vLDlgcG~G~~~~~~~~~-~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~  120 (189)
T 3p9n_A           44 TGLAVLDLYAGSGALGLEALSR-GAAS-VLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLAD  120 (189)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT-TCSE-EEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEEC
T ss_pred             CCCEEEEeCCCcCHHHHHHHHC-CCCe-EEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEEC
Confidence            3479999999999999988774 5567 999998 7888887753      6899999999862   322  4998874

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=97.78  E-value=6.1e-06  Score=66.32  Aligned_cols=66  Identities=20%  Similarity=0.172  Sum_probs=53.8

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----------CCCceEEeCCCCCC---CCcc-cEE
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----------ILGVTHIGGDTFKS---IPAA-DAI  195 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----------~~ri~~~~gd~f~~---~P~a-D~~  195 (199)
                      .+.++|||||||+|..++.+++..|..+ ++.+|+ |.+++.+++          .+|++++.+|..+.   .+.. |+|
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVEN-IDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI  155 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCE-EEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEE
Confidence            4558999999999999999999888888 999998 777777653          26899999998763   2333 998


Q ss_pred             Ee
Q 037818          196 FM  197 (199)
Q Consensus       196 ~l  197 (199)
                      ++
T Consensus       156 i~  157 (283)
T 2i7c_A          156 IV  157 (283)
T ss_dssp             EE
T ss_pred             EE
Confidence            86

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=97.78  E-value=1.9e-05  Score=59.52  Aligned_cols=61  Identities=11%  Similarity=0.077  Sum_probs=49.6

Q ss_pred             eEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC-CCCc--ccEEEec
Q 037818          135 QLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK-SIPA--ADAIFMK  198 (199)
Q Consensus       135 ~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~-~~P~--aD~~~l~  198 (199)
                      +|||||||+|.++..+++.  ..+ ++.+|. |..++.+++.     .+++++.+|+.+ ++|.  .|++++.
T Consensus        32 ~vLdiGcG~G~~~~~l~~~--~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~  101 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASL--GYE-VTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI  101 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTT--TCE-EEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE
T ss_pred             CEEEECCCCCHhHHHHHhC--CCe-EEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE
Confidence            9999999999999999987  457 999998 6777777653     389999999987 5554  3998753

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=97.78  E-value=5.2e-06  Score=65.36  Aligned_cols=67  Identities=15%  Similarity=0.104  Sum_probs=53.7

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCC---C------Cc-
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKS---I------PA-  191 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~---~------P~-  191 (199)
                      .+.++|||||||+|..+..+++..| +.+ ++.+|. |..++.++++       +||+++.+|..+.   +      +. 
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~-v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~  156 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIPEDGK-ILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS  156 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSCTTCE-EEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTC
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCC
Confidence            3457999999999999999999998 778 999998 6777777642       5899999998752   2      23 


Q ss_pred             ccEEEec
Q 037818          192 ADAIFMK  198 (199)
Q Consensus       192 aD~~~l~  198 (199)
                      -|++++.
T Consensus       157 fD~V~~d  163 (247)
T 1sui_A          157 YDFIFVD  163 (247)
T ss_dssp             BSEEEEC
T ss_pred             EEEEEEc
Confidence            3998863

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=97.77  E-value=2.4e-05  Score=62.53  Aligned_cols=64  Identities=13%  Similarity=0.037  Sum_probs=48.9

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC---CCCceEEeCCCCC-CCC
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS---ILGVTHIGGDTFK-SIP  190 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~---~~ri~~~~gd~f~-~~P  190 (199)
                      .+++..+ .... +|||||||+|.++..++++.  .+ ++.+|+ |..++.+++   .++++++.+|+++ +++
T Consensus        38 ~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~--~~-V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~  106 (271)
T 3fut_A           38 RIVEAAR-PFTG-PVFEVGPGLGALTRALLEAG--AE-VTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWE  106 (271)
T ss_dssp             HHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTT--CC-EEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGG
T ss_pred             HHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcC--CE-EEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChh
Confidence            4555555 5555 99999999999999999986  56 888887 455555543   2689999999997 555

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=97.75  E-value=9.6e-06  Score=66.14  Aligned_cols=66  Identities=21%  Similarity=0.265  Sum_probs=53.1

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-----------CCCceEEeCCCCCCC---Ccc-cEE
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-----------ILGVTHIGGDTFKSI---PAA-DAI  195 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-----------~~ri~~~~gd~f~~~---P~a-D~~  195 (199)
                      +..+|||||||+|.+++.+++..|..+ ++.+|+ |.+++.+++           .+|++++.+|..+.+   +.. |+|
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~-v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTVEK-AVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCE-EEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence            457999999999999999999888888 999998 677776653           368999999997632   333 998


Q ss_pred             Eec
Q 037818          196 FMK  198 (199)
Q Consensus       196 ~l~  198 (199)
                      ++.
T Consensus       156 i~d  158 (314)
T 1uir_A          156 IID  158 (314)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            863

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=97.74  E-value=2.3e-05  Score=62.47  Aligned_cols=66  Identities=17%  Similarity=0.134  Sum_probs=51.6

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC-CC-Cc--ccEEEec
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK-SI-PA--ADAIFMK  198 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~-~~-P~--aD~~~l~  198 (199)
                      ....+|||||||+|.++..+++. +..+ ++.+|. |..++.+++.       .+++++.+|+.+ ++ +.  .|++++.
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~  140 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERA-GIGE-YYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQ  140 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHH-TCSE-EEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHHC-CCCE-EEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEEC
Confidence            45579999999999999998776 5667 999998 6777766642       479999999997 55 33  3998864

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=97.74  E-value=1.3e-05  Score=60.92  Aligned_cols=64  Identities=9%  Similarity=0.061  Sum_probs=50.1

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC--CCCc--ccEEEec
Q 037818          133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK--SIPA--ADAIFMK  198 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~--~~P~--aD~~~l~  198 (199)
                      ..+|||+|||+|.++..++++.. .+ ++.+|. |..++.++++      ++++++.+|+.+  +.+.  .|++++.
T Consensus        55 ~~~vLDlgcG~G~~~~~l~~~~~-~~-V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~  129 (202)
T 2fpo_A           55 DAQCLDCFAGSGALGLEALSRYA-AG-ATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVD  129 (202)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTC-SE-EEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEEC
T ss_pred             CCeEEEeCCCcCHHHHHHHhcCC-CE-EEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEEC
Confidence            36999999999999999888754 26 899998 6777777642      589999999876  3332  3988864

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=97.74  E-value=2.1e-05  Score=60.84  Aligned_cols=64  Identities=14%  Similarity=0.072  Sum_probs=51.3

Q ss_pred             ceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC--------CCceEEeCCCCCC---CCc--ccEEEec
Q 037818          134 KQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI--------LGVTHIGGDTFKS---IPA--ADAIFMK  198 (199)
Q Consensus       134 ~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~--------~ri~~~~gd~f~~---~P~--aD~~~l~  198 (199)
                      .+|||||||+|..+..++++.| +.+ ++.+|. |+.++.|+++        +||+++.||..+.   ++.  .|++++.
T Consensus        58 ~~vLdiG~G~G~~~~~la~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d  136 (221)
T 3dr5_A           58 TGAIAITPAAGLVGLYILNGLADNTT-LTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ  136 (221)
T ss_dssp             CEEEEESTTHHHHHHHHHHHSCTTSE-EEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred             CCEEEEcCCchHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence            4999999999999999999986 777 999997 6667776642        5899999998762   422  3999874

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=97.74  E-value=1.9e-05  Score=71.78  Aligned_cols=66  Identities=21%  Similarity=0.261  Sum_probs=53.4

Q ss_pred             CcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCC------------CCCceEEeCCCCC-CCCc--ccE
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPS------------ILGVTHIGGDTFK-SIPA--ADA  194 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~------------~~ri~~~~gd~f~-~~P~--aD~  194 (199)
                      ...+|||||||+|.++..+++.. |..+ ++.+|+ |..++.|++            .++|+++.+|+.+ +.+.  .|+
T Consensus       721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~-VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDl  799 (950)
T 3htx_A          721 SASTLVDFGCGSGSLLDSLLDYPTSLQT-IIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDI  799 (950)
T ss_dssp             CCSEEEEETCSSSHHHHHHTSSCCCCCE-EEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCe-EEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeE
Confidence            55799999999999999999999 5567 999998 666776643            2679999999987 4443  399


Q ss_pred             EEec
Q 037818          195 IFMK  198 (199)
Q Consensus       195 ~~l~  198 (199)
                      |++.
T Consensus       800 VV~~  803 (950)
T 3htx_A          800 GTCL  803 (950)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8864

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=97.73  E-value=2.5e-05  Score=60.18  Aligned_cols=68  Identities=19%  Similarity=0.231  Sum_probs=53.7

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCC------CCeeeeccc-hHHHhcCCC-----------CCCceEEeCCCCCCCCc
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRF------ICEGINFDL-PEVVGEAPS-----------ILGVTHIGGDTFKSIPA  191 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~------l~~~~v~Dl-p~v~~~a~~-----------~~ri~~~~gd~f~~~P~  191 (199)
                      .....+|||||||+|.++..+++..+.      .+ ++.+|. |..++.+++           .++++++.+|..+++|.
T Consensus        82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  160 (227)
T 1r18_A           82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTR-IVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPP  160 (227)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCE-EEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGG
T ss_pred             CCCCCEEEEECCCccHHHHHHHHhcccccCCccCE-EEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCc
Confidence            345579999999999999999997763      67 899996 677777664           25899999999886664


Q ss_pred             ---ccEEEec
Q 037818          192 ---ADAIFMK  198 (199)
Q Consensus       192 ---aD~~~l~  198 (199)
                         .|+++..
T Consensus       161 ~~~fD~I~~~  170 (227)
T 1r18_A          161 NAPYNAIHVG  170 (227)
T ss_dssp             GCSEEEEEEC
T ss_pred             CCCccEEEEC
Confidence               3988764

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=97.72  E-value=1e-05  Score=66.06  Aligned_cols=66  Identities=21%  Similarity=0.287  Sum_probs=53.3

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----------CCCceEEeCCCCCCC---Cc-ccEEE
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----------ILGVTHIGGDTFKSI---PA-ADAIF  196 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----------~~ri~~~~gd~f~~~---P~-aD~~~  196 (199)
                      +.++|||||||+|..++.+++..|..+ ++.+|+ |.+++.|++          .+|++++.+|.++.+   +. -|+|+
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~-v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  186 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEK-VTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  186 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCE-EEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCE-EEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence            457999999999999999999888888 999998 777777653          268999999987632   23 39988


Q ss_pred             ec
Q 037818          197 MK  198 (199)
Q Consensus       197 l~  198 (199)
                      +.
T Consensus       187 ~d  188 (314)
T 2b2c_A          187 TD  188 (314)
T ss_dssp             EC
T ss_pred             Ec
Confidence            53

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=97.72  E-value=7.2e-05  Score=55.90  Aligned_cols=70  Identities=21%  Similarity=0.284  Sum_probs=52.4

Q ss_pred             HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCC---------CCeeeeccchHHHhcCCCCCCceEE-eCCCCCC----
Q 037818          123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRF---------ICEGINFDLPEVVGEAPSILGVTHI-GGDTFKS----  188 (199)
Q Consensus       123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~---------l~~~~v~Dlp~v~~~a~~~~ri~~~-~gd~f~~----  188 (199)
                      +...++.+....+|||||||+|.++..+++++|.         .+ ++.+|+.+.    ...++++++ .+|+.+.    
T Consensus        13 l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~-v~~vD~s~~----~~~~~~~~~~~~d~~~~~~~~   87 (196)
T 2nyu_A           13 VNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGF-VLGVDLLHI----FPLEGATFLCPADVTDPRTSQ   87 (196)
T ss_dssp             HHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCE-EEEECSSCC----CCCTTCEEECSCCTTSHHHHH
T ss_pred             HHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCce-EEEEechhc----ccCCCCeEEEeccCCCHHHHH
Confidence            3344442455689999999999999999999875         77 999998662    124689999 9998762    


Q ss_pred             -----CCc--ccEEEe
Q 037818          189 -----IPA--ADAIFM  197 (199)
Q Consensus       189 -----~P~--aD~~~l  197 (199)
                           +|.  .|+++.
T Consensus        88 ~~~~~~~~~~fD~V~~  103 (196)
T 2nyu_A           88 RILEVLPGRRADVILS  103 (196)
T ss_dssp             HHHHHSGGGCEEEEEE
T ss_pred             HHHHhcCCCCCcEEEe
Confidence                 232  498875

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=97.70  E-value=8.6e-06  Score=59.48  Aligned_cols=64  Identities=14%  Similarity=0.038  Sum_probs=50.5

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC----C-CceEEeCCCCCCCC-------cccEEEec
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI----L-GVTHIGGDTFKSIP-------AADAIFMK  198 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~----~-ri~~~~gd~f~~~P-------~aD~~~l~  198 (199)
                      ...+|+|+|||+|.++..+++..++   ++.+|. |..++.++++    . +++++.+|+.+..|       ..|++++.
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~~---v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~  117 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGWE---AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA  117 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTCE---EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCCe---EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEEC
Confidence            4579999999999999999998764   778998 7778777753    2 89999999986322       24888864

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=97.69  E-value=1.7e-05  Score=62.88  Aligned_cols=66  Identities=12%  Similarity=0.177  Sum_probs=51.1

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----CCCceEEeCCCCC-CCC
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----ILGVTHIGGDTFK-SIP  190 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----~~ri~~~~gd~f~-~~P  190 (199)
                      ..+++..+ .....+|||||||+|.++..++++.  .+ ++.+|. |..++.+++    .++++++.+|+++ +++
T Consensus        19 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~--~~-V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~   90 (255)
T 3tqs_A           19 QKIVSAIH-PQKTDTLVEIGPGRGALTDYLLTEC--DN-LALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFS   90 (255)
T ss_dssp             HHHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTS--SE-EEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGG
T ss_pred             HHHHHhcC-CCCcCEEEEEcccccHHHHHHHHhC--CE-EEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHH
Confidence            34556665 6666899999999999999999986  46 888997 556665553    3799999999997 444

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=97.68  E-value=2.9e-05  Score=58.62  Aligned_cols=66  Identities=12%  Similarity=0.074  Sum_probs=50.2

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC-CCCc--ccEEEec
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK-SIPA--ADAIFMK  198 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~-~~P~--aD~~~l~  198 (199)
                      ....+|||||||+|.+...++.. +..+ ++.+|. |..++.+++.     .+++++.+|+.+ ++|.  .|++++.
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~~-~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~   96 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFVE-DGYK-TYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSY   96 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHHH-TTCE-EEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEEC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHh-CCCE-EEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEc
Confidence            34579999999999986555543 5678 999998 6777776642     689999999987 5654  3998864

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=97.68  E-value=6.4e-05  Score=57.14  Aligned_cols=63  Identities=13%  Similarity=0.019  Sum_probs=46.2

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCCCCceEEeCCCCC-CCCc--ccEEEec
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFK-SIPA--ADAIFMK  198 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~~ri~~~~gd~f~-~~P~--aD~~~l~  198 (199)
                      .+++.+.......+|||||||+|.++..+.     .+ ++.+|..+.        ++++..+|+.+ ++|.  .|++++.
T Consensus        57 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-----~~-v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~~  122 (215)
T 2zfu_A           57 RIARDLRQRPASLVVADFGCGDCRLASSIR-----NP-VHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVFC  122 (215)
T ss_dssp             HHHHHHHTSCTTSCEEEETCTTCHHHHHCC-----SC-EEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEEE
T ss_pred             HHHHHHhccCCCCeEEEECCcCCHHHHHhh-----cc-EEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEEe
Confidence            344443213455799999999999998883     57 889998654        78899999987 5554  3998864

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=97.67  E-value=3.1e-05  Score=58.66  Aligned_cols=61  Identities=15%  Similarity=0.171  Sum_probs=49.0

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCC-Ceeeeccc-hHHHhcCCCC-CCceEEeCCCCC-CCCc--ccEEEec
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFI-CEGINFDL-PEVVGEAPSI-LGVTHIGGDTFK-SIPA--ADAIFMK  198 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l-~~~~v~Dl-p~v~~~a~~~-~ri~~~~gd~f~-~~P~--aD~~~l~  198 (199)
                      ...+|||||||+|.++..+     .. + ++.+|. |..++.+++. ++++++.+|+.+ ++|.  .|++++.
T Consensus        36 ~~~~vLdiG~G~G~~~~~l-----~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~  102 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL-----PYPQ-KVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLF  102 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC-----CCSE-EEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEE
T ss_pred             CCCeEEEECCCCCHhHHhC-----CCCe-EEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEc
Confidence            5579999999999999888     45 6 899997 6777777654 789999999986 5655  3998864

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=97.65  E-value=4.5e-05  Score=58.57  Aligned_cols=68  Identities=19%  Similarity=0.180  Sum_probs=53.6

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHC-----CCCCeeeeccc-hHHHhcCCC-----------CCCceEEeCCCCCCC---
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKH-----RFICEGINFDL-PEVVGEAPS-----------ILGVTHIGGDTFKSI---  189 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~-----P~l~~~~v~Dl-p~v~~~a~~-----------~~ri~~~~gd~f~~~---  189 (199)
                      .....+|||||||+|.++..+++..     |+.+ ++.+|. |..++.+++           .++++++.+|..+..   
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  156 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSY-VIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEE  156 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCE-EEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHH
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCE-EEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccccc
Confidence            4455799999999999999999987     6788 999997 666776654           258999999998744   


Q ss_pred             -Cc---ccEEEec
Q 037818          190 -PA---ADAIFMK  198 (199)
Q Consensus       190 -P~---aD~~~l~  198 (199)
                       +.   .|++++.
T Consensus       157 ~~~~~~fD~I~~~  169 (227)
T 2pbf_A          157 KKELGLFDAIHVG  169 (227)
T ss_dssp             HHHHCCEEEEEEC
T ss_pred             CccCCCcCEEEEC
Confidence             22   3888764

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=97.65  E-value=4.9e-05  Score=59.71  Aligned_cols=64  Identities=8%  Similarity=0.013  Sum_probs=52.2

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC-CCCc-ccEEEe
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK-SIPA-ADAIFM  197 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~-~~P~-aD~~~l  197 (199)
                      +....+|+|||||.|-++..+.   |..+ .+.+|+ +..++.++++     .+.++..+|+.. +.|. +|++++
T Consensus       103 ~~~p~~VLDlGCG~gpLal~~~---~~~~-y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLl  174 (253)
T 3frh_A          103 AETPRRVLDIACGLNPLALYER---GIAS-VWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALI  174 (253)
T ss_dssp             SCCCSEEEEETCTTTHHHHHHT---TCSE-EEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEE
T ss_pred             CCCCCeEEEecCCccHHHHHhc---cCCe-EEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHH
Confidence            4456899999999999999888   8999 999998 6777777653     678999999997 4555 499865

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=97.64  E-value=1e-05  Score=62.85  Aligned_cols=66  Identities=20%  Similarity=0.193  Sum_probs=52.3

Q ss_pred             CcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCC---CC-----c-cc
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKS---IP-----A-AD  193 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~---~P-----~-aD  193 (199)
                      +..+|||||||+|..+..+++..| +.+ .+.+|. |..++.++++       ++|+++.+|..+.   +|     . .|
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~-v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD  150 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQ-IIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD  150 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCE-EEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence            457999999999999999999998 678 999998 6777777642       5899999998642   21     3 38


Q ss_pred             EEEec
Q 037818          194 AIFMK  198 (199)
Q Consensus       194 ~~~l~  198 (199)
                      ++++.
T Consensus       151 ~V~~d  155 (232)
T 3cbg_A          151 LIFID  155 (232)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            88863

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=97.63  E-value=5e-05  Score=59.69  Aligned_cols=64  Identities=14%  Similarity=0.162  Sum_probs=48.9

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCCCCceEEeCCCCC-CCCc--ccEEEec
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSILGVTHIGGDTFK-SIPA--ADAIFMK  198 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~~ri~~~~gd~f~-~~P~--aD~~~l~  198 (199)
                      ...+|||||||+|.++..+++.  ..+ ++.+|. |..++.+++...-.++.+|+.+ ++|.  .|++++.
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~--~~~-v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~  121 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQER--GFE-VVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLAL  121 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT--TCE-EEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEEC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHc--CCe-EEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEc
Confidence            5579999999999999999987  457 899998 6777777653212388899986 5655  3988764

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=97.62  E-value=4.2e-05  Score=65.00  Aligned_cols=72  Identities=11%  Similarity=0.155  Sum_probs=55.0

Q ss_pred             HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCC-----
Q 037818          123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIP-----  190 (199)
Q Consensus       123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P-----  190 (199)
                      +++.++ .....+|+|+|||+|.++..+++.  ..+ ++.+|. |..++.|+++      ++++|+.+|.++.++     
T Consensus       278 ~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~--~~~-V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~  353 (433)
T 1uwv_A          278 ALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ--AAS-VVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWA  353 (433)
T ss_dssp             HHHHHT-CCTTCEEEEESCTTTTTHHHHHTT--SSE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGG
T ss_pred             HHHhhc-CCCCCEEEECCCCCCHHHHHHHhh--CCE-EEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhh
Confidence            334444 455579999999999999999988  566 899997 7778777642      589999999987432     


Q ss_pred             c--ccEEEec
Q 037818          191 A--ADAIFMK  198 (199)
Q Consensus       191 ~--aD~~~l~  198 (199)
                      .  .|++++.
T Consensus       354 ~~~fD~Vv~d  363 (433)
T 1uwv_A          354 KNGFDKVLLD  363 (433)
T ss_dssp             TTCCSEEEEC
T ss_pred             cCCCCEEEEC
Confidence            1  3988863

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=97.58  E-value=3.8e-05  Score=61.07  Aligned_cols=50  Identities=12%  Similarity=0.077  Sum_probs=39.9

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS  174 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~  174 (199)
                      ..+++.++ .....+|||||||+|.++..++++.  .+ ++.+|. |..++.+++
T Consensus        35 ~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~g--~~-V~gvD~S~~ml~~Ar~   85 (261)
T 3iv6_A           35 ENDIFLEN-IVPGSTVAVIGASTRFLIEKALERG--AS-VTVFDFSQRMCDDLAE   85 (261)
T ss_dssp             HHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHTT--CE-EEEEESCHHHHHHHHH
T ss_pred             HHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhcC--CE-EEEEECCHHHHHHHHH
Confidence            45566666 6667899999999999999999874  46 889997 667777765

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=97.57  E-value=5.5e-05  Score=67.12  Aligned_cols=95  Identities=21%  Similarity=0.173  Sum_probs=63.2

Q ss_pred             ccccccCchhHHHHHHHHhccchhhHHHHhhhCC---CCCCcceEEEecCCccHHHHHHHHH----CCCCCeeeeccchH
Q 037818           95 YSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYN---GFKGVKQLVDVGGSAGDCLRMILQK----HRFICEGINFDLPE  167 (199)
Q Consensus        95 ~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~---~~~~~~~vvDvGGG~G~~~~~l~~~----~P~l~~~~v~Dlp~  167 (199)
                      ||.+++|+-.-..|.+|+..       ++.+..+   .-.+...|+|||+|+|-+....+++    .-+++ +..++--+
T Consensus       324 YevFEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vk-VyAVEknp  395 (637)
T 4gqb_A          324 YEVFEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIK-LYAVEKNP  395 (637)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEE-EEEEESCH
T ss_pred             hhhhcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcE-EEEEECCH
Confidence            67788888888888887741       2222111   0234468999999999985444443    33345 66677644


Q ss_pred             HHhcCCC-------CCCceEEeCCCCC-CCCc-ccEEEe
Q 037818          168 VVGEAPS-------ILGVTHIGGDTFK-SIPA-ADAIFM  197 (199)
Q Consensus       168 v~~~a~~-------~~ri~~~~gd~f~-~~P~-aD~~~l  197 (199)
                      ....+++       .++|+.+.||+-+ .+|+ +|+++-
T Consensus       396 ~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVS  434 (637)
T 4gqb_A          396 NAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVS  434 (637)
T ss_dssp             HHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEEC
T ss_pred             HHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEE
Confidence            5545543       2899999999998 7888 599873

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=97.57  E-value=1.7e-05  Score=63.00  Aligned_cols=65  Identities=14%  Similarity=0.040  Sum_probs=54.4

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCCCCCc--ccEEEe
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFKSIPA--ADAIFM  197 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~~~P~--aD~~~l  197 (199)
                      ...+|+|||||.|-++..+....|..+ .+.+|. +..++.++++     .+.++...|+..+.|.  +|++++
T Consensus       132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~-y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~  204 (281)
T 3lcv_B          132 RPNTLRDLACGLNPLAAPWMGLPAETV-YIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLL  204 (281)
T ss_dssp             CCSEEEETTCTTGGGCCTTTTCCTTCE-EEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEE
T ss_pred             CCceeeeeccCccHHHHHHHhhCCCCE-EEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHH
Confidence            468999999999999999999999999 999998 5667766653     5689999999975444  499865

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=97.57  E-value=5.5e-05  Score=59.77  Aligned_cols=66  Identities=12%  Similarity=0.112  Sum_probs=50.3

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC----CCceEEeCCCCC-CCC
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI----LGVTHIGGDTFK-SIP  190 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~----~ri~~~~gd~f~-~~P  190 (199)
                      ..+++..+ .....+|||||||+|.++. + ++.++.+ ++.+|+ |..++.+++.    ++++++.+|+.+ ++|
T Consensus        11 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~-l-~~~~~~~-v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~   82 (252)
T 1qyr_A           11 DSIVSAIN-PQKGQAMVEIGPGLAALTE-P-VGERLDQ-LTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFG   82 (252)
T ss_dssp             HHHHHHHC-CCTTCCEEEECCTTTTTHH-H-HHTTCSC-EEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHH
T ss_pred             HHHHHhcC-CCCcCEEEEECCCCcHHHH-h-hhCCCCe-EEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHH
Confidence            45556655 5666799999999999999 5 4567766 889997 6777766653    589999999987 443

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=97.54  E-value=5.1e-05  Score=60.87  Aligned_cols=66  Identities=18%  Similarity=-0.018  Sum_probs=53.3

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc--ccEEEec
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA--ADAIFMK  198 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~--aD~~~l~  198 (199)
                      ....+|||+|||+|.++..++++ ...+ ++.+|+ |..++.++++       ++|+++.+|.++-.+.  +|.++|.
T Consensus       124 ~~g~~VlD~~aG~G~~~i~~a~~-g~~~-V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~  199 (278)
T 3k6r_A          124 KPDELVVDMFAGIGHLSLPIAVY-GKAK-VIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMG  199 (278)
T ss_dssp             CTTCEEEETTCTTTTTTHHHHHH-TCCE-EEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEEC
T ss_pred             CCCCEEEEecCcCcHHHHHHHHh-cCCe-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEEC
Confidence            45589999999999999999876 4567 999998 7777777653       7899999999874333  5988875

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=97.53  E-value=0.00018  Score=57.23  Aligned_cols=64  Identities=13%  Similarity=0.182  Sum_probs=48.1

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC--C------CceEE--eCCCCCCCC-c-ccEEEe
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI--L------GVTHI--GGDTFKSIP-A-ADAIFM  197 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~--~------ri~~~--~gd~f~~~P-~-aD~~~l  197 (199)
                      +....+|||||||+|.++..++++   -+ ++.+|+-+.+..+++.  .      +|+++  .+|+.+ +| . .|+++.
T Consensus        72 ~~~g~~VLDlGcGtG~~s~~la~~---~~-V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~-l~~~~fD~V~s  146 (265)
T 2oxt_A           72 VELTGRVVDLGCGRGGWSYYAASR---PH-VMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHT-LPVERTDVIMC  146 (265)
T ss_dssp             CCCCEEEEEESCTTSHHHHHHHTS---TT-EEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTT-SCCCCCSEEEE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHc---Cc-EEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhH-CCCCCCcEEEE
Confidence            456689999999999999999887   57 9999986544333322  2      68999  999986 33 3 499886


Q ss_pred             c
Q 037818          198 K  198 (199)
Q Consensus       198 ~  198 (199)
                      .
T Consensus       147 d  147 (265)
T 2oxt_A          147 D  147 (265)
T ss_dssp             C
T ss_pred             e
Confidence            3

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=97.52  E-value=0.00014  Score=58.69  Aligned_cols=66  Identities=20%  Similarity=0.152  Sum_probs=49.7

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------------CCceEEeCCCCC-C----C--
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------------LGVTHIGGDTFK-S----I--  189 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------------~ri~~~~gd~f~-~----~--  189 (199)
                      ....+|||||||+|.++..+++ .+..+ .+.+|+ |..++.+++.             .+++++.+|+.+ +    +  
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~-~~~~~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~  110 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKK-GRINK-LVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRD  110 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHH-TTCSE-EEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSS
T ss_pred             CCCCEEEEECCCCcHHHHHHHh-cCCCE-EEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhccc
Confidence            3557999999999999999988 46677 999998 5666666532             379999999986 3    3  


Q ss_pred             Cc--ccEEEec
Q 037818          190 PA--ADAIFMK  198 (199)
Q Consensus       190 P~--aD~~~l~  198 (199)
                      +.  .|+++..
T Consensus       111 ~~~~fD~V~~~  121 (313)
T 3bgv_A          111 PQMCFDICSCQ  121 (313)
T ss_dssp             TTCCEEEEEEE
T ss_pred             CCCCEEEEEEe
Confidence            22  3998864

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=97.50  E-value=0.0001  Score=56.44  Aligned_cols=68  Identities=21%  Similarity=0.132  Sum_probs=52.8

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCC-----------CCCceEEeCCCCCCCC-c--cc
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPS-----------ILGVTHIGGDTFKSIP-A--AD  193 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~-----------~~ri~~~~gd~f~~~P-~--aD  193 (199)
                      .....+|||||||+|.++..+++.. |..+ ++.+|. |..++.+++           .++++++.+|..+..+ .  .|
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  153 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGK-VIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYD  153 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEE
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcC
Confidence            3455799999999999999999985 7778 999997 677776653           2489999999986432 2  38


Q ss_pred             EEEec
Q 037818          194 AIFMK  198 (199)
Q Consensus       194 ~~~l~  198 (199)
                      ++++.
T Consensus       154 ~i~~~  158 (226)
T 1i1n_A          154 AIHVG  158 (226)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            88764

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=97.50  E-value=0.00015  Score=58.06  Aligned_cols=64  Identities=14%  Similarity=0.074  Sum_probs=48.2

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCC--C------CceEE--eCCCCCCCC-c-ccEEEe
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI--L------GVTHI--GGDTFKSIP-A-ADAIFM  197 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~--~------ri~~~--~gd~f~~~P-~-aD~~~l  197 (199)
                      +....+|||||||+|.++..++++   -+ ++.+|+-+.+..+++.  .      +|+++  .+|+.+ +| . .|+++.
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~---~~-V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~-l~~~~fD~Vvs  154 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQ---PN-VREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTK-MEPFQADTVLC  154 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTS---TT-EEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGG-CCCCCCSEEEE
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHc---CC-EEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhh-CCCCCcCEEEE
Confidence            456689999999999999999988   57 9999986543333322  2      78999  999976 33 3 499886


Q ss_pred             c
Q 037818          198 K  198 (199)
Q Consensus       198 ~  198 (199)
                      .
T Consensus       155 d  155 (276)
T 2wa2_A          155 D  155 (276)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=97.46  E-value=0.0001  Score=59.99  Aligned_cols=92  Identities=13%  Similarity=0.058  Sum_probs=63.0

Q ss_pred             hHHHHHHHHhccchhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCC-CCeeeeccc-hHHHhcCCCC------
Q 037818          104 MNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVGEAPSI------  175 (199)
Q Consensus       104 ~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~~v~Dl-p~v~~~a~~~------  175 (199)
                      ....|....-.........+...++ .....+|||+|||+|..+..+++..+. .+ ++.+|. |..++.++++      
T Consensus        91 ~~~~~~~G~~~~qd~~s~l~~~~l~-~~~g~~VLDlg~G~G~~t~~la~~~~~~~~-v~avD~s~~~l~~a~~~~~~~g~  168 (315)
T 1ixk_A           91 STPEFLTGLIYIQEASSMYPPVALD-PKPGEIVADMAAAPGGKTSYLAQLMRNDGV-IYAFDVDENRLRETRLNLSRLGV  168 (315)
T ss_dssp             GSHHHHTTSEEECCHHHHHHHHHHC-CCTTCEEEECCSSCSHHHHHHHHHTTTCSE-EEEECSCHHHHHHHHHHHHHHTC
T ss_pred             cChhHhcceEEEeCHHHHHHHHHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCE-EEEEcCCHHHHHHHHHHHHHhCC
Confidence            3344555443332222223334455 566689999999999999999999764 77 999997 5667666542      


Q ss_pred             CCceEEeCCCCC-C-CCc-ccEEEe
Q 037818          176 LGVTHIGGDTFK-S-IPA-ADAIFM  197 (199)
Q Consensus       176 ~ri~~~~gd~f~-~-~P~-aD~~~l  197 (199)
                      ++++++.+|..+ + .+. .|+|++
T Consensus       169 ~~v~~~~~D~~~~~~~~~~fD~Il~  193 (315)
T 1ixk_A          169 LNVILFHSSSLHIGELNVEFDKILL  193 (315)
T ss_dssp             CSEEEESSCGGGGGGGCCCEEEEEE
T ss_pred             CeEEEEECChhhcccccccCCEEEE
Confidence            579999999986 2 233 498886

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=97.43  E-value=0.00019  Score=58.25  Aligned_cols=64  Identities=19%  Similarity=0.123  Sum_probs=47.2

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-----hHHHhcCC--CC--CCceEEeC-CCCCCCCc-ccEEEe
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-----PEVVGEAP--SI--LGVTHIGG-DTFKSIPA-ADAIFM  197 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-----p~v~~~a~--~~--~ri~~~~g-d~f~~~P~-aD~~~l  197 (199)
                      +....+|||||||+|.++..++++   -+ ++.+|.     +..++..+  ..  ++|+++.+ |+++.-+. .|+|+.
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~---~~-V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~s  154 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGL---KN-VREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLC  154 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTS---TT-EEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEE
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhc---CC-EEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEE
Confidence            455689999999999999999988   36 888898     54333322  12  67999999 99863233 599875

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=97.43  E-value=0.00014  Score=58.61  Aligned_cols=66  Identities=17%  Similarity=0.191  Sum_probs=53.6

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-----------CCCceEEeCCCCCCC---Ccc-cE
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-----------ILGVTHIGGDTFKSI---PAA-DA  194 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-----------~~ri~~~~gd~f~~~---P~a-D~  194 (199)
                      .+.++||=||||.|..++++++..|--+ ++++|+ |.|++.+++           .+|++.+.+|-++-+   +.. |+
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~-v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDv  160 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVES-ITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV  160 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCE-EEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcce-EEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCE
Confidence            4668999999999999999998777667 999997 788887763           389999999998732   223 98


Q ss_pred             EEe
Q 037818          195 IFM  197 (199)
Q Consensus       195 ~~l  197 (199)
                      |++
T Consensus       161 Ii~  163 (294)
T 3o4f_A          161 IIS  163 (294)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            876

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=97.43  E-value=0.00011  Score=61.56  Aligned_cols=64  Identities=16%  Similarity=0.059  Sum_probs=51.5

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCCC-CC-c-ccEEEec
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFKS-IP-A-ADAIFMK  198 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~~-~P-~-aD~~~l~  198 (199)
                      ...+|+|+|||+|.++..+++.  ..+ ++.+|. |..++.++++     -+++++.+|+++. .+ . .|+|+++
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~--g~~-V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~n  305 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARM--GAE-VVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTN  305 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHT--TCE-EEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEEC
T ss_pred             CCCEEEEEeeeCCHHHHHHHHc--CCE-EEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEEC
Confidence            3469999999999999999998  457 999997 7778877753     3599999999984 33 2 3999874

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=97.41  E-value=5.8e-05  Score=59.83  Aligned_cols=66  Identities=11%  Similarity=0.119  Sum_probs=50.7

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-h-------HHHhcCCCC-------CCceEEeCCCCCC---CC-
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-P-------EVVGEAPSI-------LGVTHIGGDTFKS---IP-  190 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p-------~v~~~a~~~-------~ri~~~~gd~f~~---~P-  190 (199)
                      .....+|||+|||+|.++..+++.  ..+ ++.+|. |       ..++.++++       +||+++.+|..+-   ++ 
T Consensus        81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~-V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~  157 (258)
T 2r6z_A           81 HTAHPTVWDATAGLGRDSFVLASL--GLT-VTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVK  157 (258)
T ss_dssp             GGGCCCEEETTCTTCHHHHHHHHT--TCC-EEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHH
T ss_pred             cCCcCeEEEeeCccCHHHHHHHHh--CCE-EEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhc
Confidence            444579999999999999999986  467 999998 5       455666543       5799999999862   43 


Q ss_pred             --c-ccEEEec
Q 037818          191 --A-ADAIFMK  198 (199)
Q Consensus       191 --~-aD~~~l~  198 (199)
                        . .|++++.
T Consensus       158 ~~~~fD~V~~d  168 (258)
T 2r6z_A          158 TQGKPDIVYLD  168 (258)
T ss_dssp             HHCCCSEEEEC
T ss_pred             cCCCccEEEEC
Confidence              3 4988873

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=97.39  E-value=0.00013  Score=55.83  Aligned_cols=58  Identities=19%  Similarity=0.171  Sum_probs=46.1

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCCCCceEEeCCCCC-CCCc--ccEEEec
Q 037818          133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSILGVTHIGGDTFK-SIPA--ADAIFMK  198 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~~ri~~~~gd~f~-~~P~--aD~~~l~  198 (199)
                      ..+|||||||+|.++..+++.       +.+|. |..++.+++. +++++.+|+.+ +++.  .|++++.
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~  109 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMV  109 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEE
T ss_pred             CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEc
Confidence            579999999999999988765       67786 6777777655 89999999876 5554  3998864

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=97.36  E-value=0.00048  Score=53.71  Aligned_cols=67  Identities=9%  Similarity=0.116  Sum_probs=51.0

Q ss_pred             CCCcceEEEecCCccHHHHHHHHH-CCCCCeeeeccchH-H----HhcCCCCCCceEEeCCCCCC-----CCc-ccEEEe
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQK-HRFICEGINFDLPE-V----VGEAPSILGVTHIGGDTFKS-----IPA-ADAIFM  197 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~-~P~l~~~~v~Dlp~-v----~~~a~~~~ri~~~~gd~f~~-----~P~-aD~~~l  197 (199)
                      +....+|||+|||+|.++..+++. .|+-+ ++.+|.-+ .    ++.+++..+|+++.+|...+     ++. .|+++.
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~-V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~  152 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGK-AYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYV  152 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSE-EEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEE
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCE-EEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEe
Confidence            566689999999999999999986 46777 99999843 2    34455557899999998753     122 488875

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=97.30  E-value=0.00013  Score=59.83  Aligned_cols=64  Identities=13%  Similarity=0.025  Sum_probs=51.6

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCcccEEEec
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPAADAIFMK  198 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~aD~~~l~  198 (199)
                      ....+|+|+|||+|.++.. ++  ...+ ++.+|. |..++.++++       ++++++.+|.++.....|++++.
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~-V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~d  265 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK--NAKK-IYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMN  265 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT--TSSE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEEC
T ss_pred             CCCCEEEEccCccCHHHHh-cc--CCCE-EEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEEC
Confidence            3457999999999999999 76  4667 999998 7888877653       58999999999755334998874

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=97.27  E-value=0.00029  Score=56.25  Aligned_cols=65  Identities=14%  Similarity=0.072  Sum_probs=46.1

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc--hHHHhcCCCC----------------CCceEEeCCCCC---CC
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL--PEVVGEAPSI----------------LGVTHIGGDTFK---SI  189 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl--p~v~~~a~~~----------------~ri~~~~gd~f~---~~  189 (199)
                      ....+|||||||+|.++..+++.. ..+ ++.+|.  |..++.++++                ++|++...|.-+   .+
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~~-~~~-v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  155 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLAG-ADQ-VVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL  155 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHTT-CSE-EEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred             cCCCeEEEecccccHHHHHHHHcC-CCE-EEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence            345799999999999999888763 346 999999  6777665431                378888655443   22


Q ss_pred             -----Cc-ccEEEe
Q 037818          190 -----PA-ADAIFM  197 (199)
Q Consensus       190 -----P~-aD~~~l  197 (199)
                           +. .|+|++
T Consensus       156 ~~~~~~~~fD~Ii~  169 (281)
T 3bzb_A          156 QRCTGLQRFQVVLL  169 (281)
T ss_dssp             HHHHSCSSBSEEEE
T ss_pred             HhhccCCCCCEEEE
Confidence                 22 388876

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=97.26  E-value=5.6e-05  Score=59.11  Aligned_cols=41  Identities=15%  Similarity=-0.026  Sum_probs=33.3

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCC
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAP  173 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~  173 (199)
                      ....+|||||||+|.++..+++..+ .+ ++.+|. |..++.++
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~-v~gvD~s~~~l~~a~   96 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESF-TE-IIVSDYTDQNLWELQ   96 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTE-EE-EEEEESCHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhccc-Ce-EEEecCCHHHHHHHH
Confidence            4457999999999999999998877 56 889998 56666664

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=97.26  E-value=0.0001  Score=58.65  Aligned_cols=70  Identities=16%  Similarity=0.065  Sum_probs=53.7

Q ss_pred             hCCCCCCcceEEEecCCccHHHHHHHHHCCC-CCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCC-C-----Cc
Q 037818          126 GYNGFKGVKQLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKS-I-----PA  191 (199)
Q Consensus       126 ~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~-~-----P~  191 (199)
                      .++ .....+|+|+|||+|..+..+++..++ .+ ++.+|. |..++.++++      ++++++.+|..+. .     +.
T Consensus        78 ~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~-v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~  155 (274)
T 3ajd_A           78 VLN-PREDDFILDMCAAPGGKTTHLAQLMKNKGT-IVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEI  155 (274)
T ss_dssp             HHC-CCTTCEEEETTCTTCHHHHHHHHHTTTCSE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTC
T ss_pred             HhC-CCCcCEEEEeCCCccHHHHHHHHHcCCCCE-EEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccc
Confidence            344 455679999999999999999999887 67 999997 5556665542      5899999998752 1     33


Q ss_pred             -ccEEEe
Q 037818          192 -ADAIFM  197 (199)
Q Consensus       192 -aD~~~l  197 (199)
                       .|+|++
T Consensus       156 ~fD~Vl~  162 (274)
T 3ajd_A          156 FFDKILL  162 (274)
T ss_dssp             CEEEEEE
T ss_pred             cCCEEEE
Confidence             388876

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=97.26  E-value=0.00015  Score=59.60  Aligned_cols=66  Identities=11%  Similarity=0.159  Sum_probs=53.1

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCC-----CCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCCCCCc--ccEEEec
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRF-----ICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFKSIPA--ADAIFMK  198 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~-----l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~~~P~--aD~~~l~  198 (199)
                      ...+|+|+|||+|.++..+++..|.     .+ ++.+|+ |..++.|+.+     .++.+..+|.+++.+.  .|+++.+
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~-v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~N  208 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVH-ASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD  208 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEE-EEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCce-EEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEEC
Confidence            4579999999999999999999876     56 899998 6777777642     3689999999986543  4988764

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=97.23  E-value=0.00022  Score=57.01  Aligned_cols=56  Identities=16%  Similarity=0.188  Sum_probs=44.5

Q ss_pred             CCcceEEEecCCc--cHHHHH-HHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC
Q 037818          131 KGVKQLVDVGGSA--GDCLRM-ILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK  187 (199)
Q Consensus       131 ~~~~~vvDvGGG~--G~~~~~-l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~  187 (199)
                      .+..+|||||||.  +....+ +.+.+|+.+ ++.+|. |.+++.+++.      .+++++.+|+.+
T Consensus        77 ~g~~q~LDLGcG~pT~~~~~~la~~~~P~ar-Vv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~  142 (277)
T 3giw_A           77 AGIRQFLDIGTGIPTSPNLHEIAQSVAPESR-VVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLD  142 (277)
T ss_dssp             SCCCEEEEESCCSCCSSCHHHHHHHHCTTCE-EEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTC
T ss_pred             cCCCEEEEeCCCCCcccHHHHHHHHHCCCCE-EEEEeCChHHHHHHHHHhccCCCCcEEEEEecccC
Confidence            3568999999997  333444 445789999 999998 8999998752      479999999986

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=97.23  E-value=7.2e-05  Score=61.46  Aligned_cols=63  Identities=17%  Similarity=0.121  Sum_probs=50.4

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------C-CceEEeCCCCCCC------Cc-ccEE
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------L-GVTHIGGDTFKSI------PA-ADAI  195 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~-ri~~~~gd~f~~~------P~-aD~~  195 (199)
                      ...+|||+|||+|.++..+++...  + ++.+|. |..++.++++       + +++++.+|.++..      .. .|+|
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~ga--~-V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~I  229 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAGA--E-VTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDII  229 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTC--E-EEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEE
T ss_pred             CCCcEEEcccccCHHHHHHHHcCC--E-EEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEE
Confidence            346999999999999999999754  7 999998 7778777653       2 5999999998732      22 4999


Q ss_pred             Ee
Q 037818          196 FM  197 (199)
Q Consensus       196 ~l  197 (199)
                      ++
T Consensus       230 i~  231 (332)
T 2igt_A          230 LT  231 (332)
T ss_dssp             EE
T ss_pred             EE
Confidence            87

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=97.20  E-value=0.00036  Score=59.21  Aligned_cols=64  Identities=9%  Similarity=-0.001  Sum_probs=50.9

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCc-ccEEEec
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPA-ADAIFMK  198 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~-aD~~~l~  198 (199)
                      ....+|+|+|||+|.++..+++..  .+ ++.+|. |..++.|+++      + ++++.+|.++..+. .|++++.
T Consensus       289 ~~~~~VLDlgcG~G~~sl~la~~~--~~-V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~d  360 (425)
T 2jjq_A          289 VEGEKILDMYSGVGTFGIYLAKRG--FN-VKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVD  360 (425)
T ss_dssp             CCSSEEEEETCTTTHHHHHHHHTT--CE-EEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEEC
T ss_pred             CCCCEEEEeeccchHHHHHHHHcC--CE-EEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEc
Confidence            344799999999999999999873  46 889997 6778777653      4 99999999985554 5988863

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=97.17  E-value=0.00037  Score=62.80  Aligned_cols=77  Identities=13%  Similarity=0.016  Sum_probs=58.5

Q ss_pred             HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHH------------------------------------------CCCC
Q 037818          120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQK------------------------------------------HRFI  157 (199)
Q Consensus       120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~------------------------------------------~P~l  157 (199)
                      +..++.... |.....|+|.+||+|.++++.+..                                          .|+.
T Consensus       179 Aa~ll~~~~-~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~  257 (703)
T 3v97_A          179 AAAIVMRSG-WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSS  257 (703)
T ss_dssp             HHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHhhC-CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCc
Confidence            345556565 887789999999999999988764                                          3446


Q ss_pred             Ceeeeccc-hHHHhcCCCC-------CCceEEeCCCCC-CCC----cccEEEec
Q 037818          158 CEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK-SIP----AADAIFMK  198 (199)
Q Consensus       158 ~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~-~~P----~aD~~~l~  198 (199)
                      + ++.+|. |..++.|+.+       ++|++..+|+++ ..|    ..|+++.+
T Consensus       258 ~-i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~N  310 (703)
T 3v97_A          258 H-FYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSN  310 (703)
T ss_dssp             C-EEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEEC
T ss_pred             c-EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeC
Confidence            7 899997 7888888753       569999999986 223    23888764

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=97.13  E-value=0.00047  Score=58.80  Aligned_cols=90  Identities=14%  Similarity=0.038  Sum_probs=61.5

Q ss_pred             HHHHHHHhccchhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCC-CCeeeeccc-hHHHhcCCCC------CC
Q 037818          106 GLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVGEAPSI------LG  177 (199)
Q Consensus       106 ~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~~v~Dl-p~v~~~a~~~------~r  177 (199)
                      ..|....-.........+...++ .....+|||+|||+|..+..+++..++ .+ ++.+|. |..++.++++      ++
T Consensus       234 ~~~~~G~~~~qd~~s~l~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~-v~a~D~s~~~l~~~~~~~~~~g~~~  311 (450)
T 2yxl_A          234 SAFNEGKIIVQEEASAVASIVLD-PKPGETVVDLAAAPGGKTTHLAELMKNKGK-IYAFDVDKMRMKRLKDFVKRMGIKI  311 (450)
T ss_dssp             HHHHTTSEEECCHHHHHHHHHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSE-EEEECSCHHHHHHHHHHHHHTTCCS
T ss_pred             chhhCceEEecCchhHHHHHhcC-CCCcCEEEEeCCCccHHHHHHHHHcCCCCE-EEEEcCCHHHHHHHHHHHHHcCCCc
Confidence            44554433222222223334444 555679999999999999999999988 67 999997 4556555432      57


Q ss_pred             ceEEeCCCCCC---CC-c-ccEEEe
Q 037818          178 VTHIGGDTFKS---IP-A-ADAIFM  197 (199)
Q Consensus       178 i~~~~gd~f~~---~P-~-aD~~~l  197 (199)
                      ++++.+|+.+.   ++ . .|+|++
T Consensus       312 v~~~~~D~~~~~~~~~~~~fD~Vl~  336 (450)
T 2yxl_A          312 VKPLVKDARKAPEIIGEEVADKVLL  336 (450)
T ss_dssp             EEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred             EEEEEcChhhcchhhccCCCCEEEE
Confidence            99999999862   44 3 399886

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=97.10  E-value=0.00038  Score=58.56  Aligned_cols=63  Identities=13%  Similarity=0.077  Sum_probs=47.4

Q ss_pred             CcceEEEecCC------ccHHHHHHHHH-CCCCCeeeeccchHHHhcCCCCCCceEEeCCCCC-CCC-------c-ccEE
Q 037818          132 GVKQLVDVGGS------AGDCLRMILQK-HRFICEGINFDLPEVVGEAPSILGVTHIGGDTFK-SIP-------A-ADAI  195 (199)
Q Consensus       132 ~~~~vvDvGGG------~G~~~~~l~~~-~P~l~~~~v~Dlp~v~~~a~~~~ri~~~~gd~f~-~~P-------~-aD~~  195 (199)
                      +..+|||||||      +|..+..++++ +|+.+ ++.+|+-+...  ...+||+++.+|+.+ +++       . .|+|
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~-V~GVDiSp~m~--~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlV  292 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQ-IYGLDIMDKSH--VDELRIRTIQGDQNDAEFLDRIARRYGPFDIV  292 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCE-EEEEESSCCGG--GCBTTEEEEECCTTCHHHHHHHHHHHCCEEEE
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCE-EEEEECCHHHh--hcCCCcEEEEecccccchhhhhhcccCCccEE
Confidence            34799999999      66767777765 69999 99999854432  235899999999987 444       2 3988


Q ss_pred             Ee
Q 037818          196 FM  197 (199)
Q Consensus       196 ~l  197 (199)
                      +.
T Consensus       293 is  294 (419)
T 3sso_A          293 ID  294 (419)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=97.09  E-value=0.0015  Score=50.87  Aligned_cols=70  Identities=13%  Similarity=0.111  Sum_probs=52.6

Q ss_pred             hCCCCCCcceEEEecCCccHHHHHHHHH-CCCCCeeeeccc-hHHHhcC----CCCCCceEEeCCCCCC--CC--c--cc
Q 037818          126 GYNGFKGVKQLVDVGGSAGDCLRMILQK-HRFICEGINFDL-PEVVGEA----PSILGVTHIGGDTFKS--IP--A--AD  193 (199)
Q Consensus       126 ~~~~~~~~~~vvDvGGG~G~~~~~l~~~-~P~l~~~~v~Dl-p~v~~~a----~~~~ri~~~~gd~f~~--~P--~--aD  193 (199)
                      .++ .+...+|+|||||+|.++..+++. -|+=+ ++.+|. |..++.+    ++.++++.+.+|.-++  .|  .  .|
T Consensus        72 ~l~-ikpG~~VldlG~G~G~~~~~la~~VG~~G~-V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vD  149 (233)
T 4df3_A           72 ELP-VKEGDRILYLGIASGTTASHMSDIIGPRGR-IYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVD  149 (233)
T ss_dssp             CCC-CCTTCEEEEETCTTSHHHHHHHHHHCTTCE-EEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEE
T ss_pred             hcC-CCCCCEEEEecCcCCHHHHHHHHHhCCCce-EEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEE
Confidence            344 677799999999999999999997 48888 999997 5555444    4457899998888752  22  2  38


Q ss_pred             EEEe
Q 037818          194 AIFM  197 (199)
Q Consensus       194 ~~~l  197 (199)
                      ++++
T Consensus       150 vVf~  153 (233)
T 4df3_A          150 GLYA  153 (233)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7764

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=97.02  E-value=0.00014  Score=60.85  Aligned_cols=65  Identities=11%  Similarity=0.007  Sum_probs=50.5

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------C--CceEEeCCCCCCCC-------cccE
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------L--GVTHIGGDTFKSIP-------AADA  194 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~--ri~~~~gd~f~~~P-------~aD~  194 (199)
                      ....+|||+|||+|.++..+++.. .-+ ++.+|. |..++.|+++      +  +++++.+|.++.+|       ..|+
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~-V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~  288 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGG-AMA-TTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI  288 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTT-BSE-EEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCC-CCE-EEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccE
Confidence            455799999999999999999863 235 899997 7777777652      3  89999999987332       2399


Q ss_pred             EEe
Q 037818          195 IFM  197 (199)
Q Consensus       195 ~~l  197 (199)
                      +++
T Consensus       289 Ii~  291 (385)
T 2b78_A          289 III  291 (385)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            887

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=96.93  E-value=0.00027  Score=62.06  Aligned_cols=63  Identities=13%  Similarity=0.076  Sum_probs=48.2

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----C--CCceEEeCCCCC---CCCc--ccEEEe
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----I--LGVTHIGGDTFK---SIPA--ADAIFM  197 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----~--~ri~~~~gd~f~---~~P~--aD~~~l  197 (199)
                      +.-+|||||||.|.++..+++.  ..+ +|.+|. |..++.|+.    .  -.|+|..+|..+   +.+.  -|+|+.
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~--ga~-V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~  140 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASK--GAT-IVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIG  140 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEE
T ss_pred             CCCeEEEECCCCcHHHHHHHhC--CCE-EEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEE
Confidence            4468999999999999999997  567 899997 677777763    2  358999998754   3333  398864

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=96.88  E-value=0.00031  Score=59.27  Aligned_cols=63  Identities=24%  Similarity=0.299  Sum_probs=49.5

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC--------CCceEEeCCCCCCCC-----cccEEEec
Q 037818          133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI--------LGVTHIGGDTFKSIP-----AADAIFMK  198 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~--------~ri~~~~gd~f~~~P-----~aD~~~l~  198 (199)
                      ..+|+|+|||+|..+..+++..  .+ ++.+|. |..++.++.+        ++|+++.+|+++.++     ..|+|++.
T Consensus        94 g~~VLDLgcG~G~~al~LA~~g--~~-V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD  170 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSKA--SQ-GIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD  170 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTTC--SE-EEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred             CCEEEEeCCCchHHHHHHHhcC--CE-EEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence            4799999999999999998874  56 899997 6667666542        579999999997422     24998873

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=96.79  E-value=0.00082  Score=54.32  Aligned_cols=51  Identities=8%  Similarity=0.048  Sum_probs=38.1

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----C-------CceEEeCCC
Q 037818          133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----L-------GVTHIGGDT  185 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~-------ri~~~~gd~  185 (199)
                      ..+|||||||+|..+..+++.. ..+ ++.+|+ |..++.|++.     .       +++|..+|+
T Consensus        49 ~~~VLDlGCG~G~~l~~~~~~~-~~~-v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~  112 (302)
T 2vdw_A           49 KRKVLAIDFGNGADLEKYFYGE-IAL-LVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETI  112 (302)
T ss_dssp             CCEEEETTCTTTTTHHHHHHTT-CSE-EEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCT
T ss_pred             CCeEEEEecCCcHhHHHHHhcC-CCe-EEEEECCHHHHHHHHHHHHhccccccccccccchhhhhc
Confidence            4799999999998777666543 456 899998 6778877752     1       267888887

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=96.79  E-value=0.00025  Score=59.42  Aligned_cols=64  Identities=17%  Similarity=0.127  Sum_probs=50.8

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCC------Cc-ccEEE
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSI------PA-ADAIF  196 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~------P~-aD~~~  196 (199)
                      ...+|||+|||+|.++..+++. +..+ ++.+|. |..++.++++       ++++++.+|.++..      +. .|+++
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~-g~~~-v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi  294 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIA-GADE-VIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV  294 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT-TCSE-EEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHC-CCCE-EEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEE
Confidence            5579999999999999999987 4446 899998 7777777653       28999999998632      22 39988


Q ss_pred             e
Q 037818          197 M  197 (199)
Q Consensus       197 l  197 (199)
                      +
T Consensus       295 ~  295 (396)
T 2as0_A          295 L  295 (396)
T ss_dssp             E
T ss_pred             E
Confidence            7

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=96.79  E-value=0.00085  Score=53.13  Aligned_cols=74  Identities=12%  Similarity=0.154  Sum_probs=53.1

Q ss_pred             HHHhhhCCCCCCc--ceEEEecCCccHHHHHHHHHCCCCCeeeeccchHH--------HhcCCC-------C-CCceEEe
Q 037818          121 TSVLDGYNGFKGV--KQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEV--------VGEAPS-------I-LGVTHIG  182 (199)
Q Consensus       121 ~~~~~~~~~~~~~--~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v--------~~~a~~-------~-~ri~~~~  182 (199)
                      ..+.+... ....  .+|||++||.|..+..++++  ..+ ++.+|.-+.        ++.++.       . +||+++.
T Consensus        76 e~l~~al~-l~~g~~~~VLDl~~G~G~dal~lA~~--g~~-V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~  151 (258)
T 2oyr_A           76 EAVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCR-VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH  151 (258)
T ss_dssp             SHHHHHTT-CBTTBCCCEEETTCTTCHHHHHHHHH--TCC-EEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEE
T ss_pred             HHHHHHhc-ccCCCCCEEEEcCCcCCHHHHHHHHc--CCE-EEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEE
Confidence            34555554 4444  79999999999999999998  568 999998543        333321       1 5799999


Q ss_pred             CCCCC---CCCc-ccEEEec
Q 037818          183 GDTFK---SIPA-ADAIFMK  198 (199)
Q Consensus       183 gd~f~---~~P~-aD~~~l~  198 (199)
                      +|..+   .++. .|++++.
T Consensus       152 ~D~~~~L~~~~~~fDvV~lD  171 (258)
T 2oyr_A          152 ASSLTALTDITPRPQVVYLD  171 (258)
T ss_dssp             SCHHHHSTTCSSCCSEEEEC
T ss_pred             CCHHHHHHhCcccCCEEEEc
Confidence            99875   2343 4998873

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=96.77  E-value=0.00022  Score=59.46  Aligned_cols=63  Identities=17%  Similarity=0.148  Sum_probs=51.0

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCC------Cc-ccEEEe
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSI------PA-ADAIFM  197 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~------P~-aD~~~l  197 (199)
                      ...+|||+|||+|.++..+++.  ..+ ++.+|. |..++.++++      ++++++.+|.++..      +. .|++++
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~--~~~-v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~  285 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG--FRE-VVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL  285 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEE-EEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHh--CCE-EEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEE
Confidence            5679999999999999999998  556 899998 7888877753      45999999998632      22 398887

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=96.74  E-value=0.00015  Score=57.16  Aligned_cols=41  Identities=12%  Similarity=-0.074  Sum_probs=28.1

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCC
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAP  173 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~  173 (199)
                      ....+|||||||+|.++..+++..- -+ ++.+|. |..++.++
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~~~-~~-v~g~D~s~~~l~~a~   95 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACDSF-QD-ITLSDFTDRNREELE   95 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTE-EE-EEEEESCHHHHHHHH
T ss_pred             CCCceEEEeCCCccHHHHHHHHhhh-cc-eeeccccHHHHHHHH
Confidence            3457999999999988766554432 25 888997 55555443

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=96.73  E-value=0.0006  Score=56.60  Aligned_cols=51  Identities=12%  Similarity=0.012  Sum_probs=42.0

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC
Q 037818          134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK  187 (199)
Q Consensus       134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~  187 (199)
                      .+|+|+|||+|.++..+++..  -+ ++.+|. |..++.|+++      ++++++.+|.++
T Consensus       215 ~~vLDl~cG~G~~~l~la~~~--~~-V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~  272 (369)
T 3bt7_A          215 GDLLELYCGNGNFSLALARNF--DR-VLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEE  272 (369)
T ss_dssp             SEEEEESCTTSHHHHHHGGGS--SE-EEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHH
T ss_pred             CEEEEccCCCCHHHHHHHhcC--CE-EEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHH
Confidence            689999999999999988754  35 889997 6777777642      689999999875

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=96.71  E-value=0.0011  Score=56.35  Aligned_cols=75  Identities=19%  Similarity=0.098  Sum_probs=54.8

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHC-------------CCCCeeeeccc-hHHHhcCCCC------C--Cce
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-------------RFICEGINFDL-PEVVGEAPSI------L--GVT  179 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-------------P~l~~~~v~Dl-p~v~~~a~~~------~--ri~  179 (199)
                      .+++..+ .....+|+|+|||+|.++..+.+..             +..+ .+.+|+ |..++.|+.+      +  ++.
T Consensus       162 ~mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~-i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~  239 (445)
T 2okc_A          162 AMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKA-LHGVDNTPLVVTLASMNLYLHGIGTDRSP  239 (445)
T ss_dssp             HHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTT-EEEEESCHHHHHHHHHHHHHTTCCSSCCS
T ss_pred             HHHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeE-EEEEeCCHHHHHHHHHHHHHhCCCcCCCC
Confidence            4444444 4445799999999999999988764             5677 899997 7777776532      2  788


Q ss_pred             EEeCCCCCC-CCc-ccEEEec
Q 037818          180 HIGGDTFKS-IPA-ADAIFMK  198 (199)
Q Consensus       180 ~~~gd~f~~-~P~-aD~~~l~  198 (199)
                      +..+|.+.. ... .|+++.+
T Consensus       240 i~~gD~l~~~~~~~fD~Iv~N  260 (445)
T 2okc_A          240 IVCEDSLEKEPSTLVDVILAN  260 (445)
T ss_dssp             EEECCTTTSCCSSCEEEEEEC
T ss_pred             EeeCCCCCCcccCCcCEEEEC
Confidence            999999973 332 4988764

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=96.67  E-value=0.0025  Score=49.42  Aligned_cols=50  Identities=18%  Similarity=0.173  Sum_probs=34.9

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCC
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAP  173 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~  173 (199)
                      .+++.++.-....+|||||||+|.++..++++ ...+ ++.+|+ |..++.++
T Consensus        27 ~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~-g~~~-V~gvDis~~ml~~a~   77 (232)
T 3opn_A           27 KALKEFHLEINGKTCLDIGSSTGGFTDVMLQN-GAKL-VYALDVGTNQLAWKI   77 (232)
T ss_dssp             HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCSE-EEEECSSCCCCCHHH
T ss_pred             HHHHHcCCCCCCCEEEEEccCCCHHHHHHHhc-CCCE-EEEEcCCHHHHHHHH
Confidence            34445541123469999999999999999988 3347 999997 45555443

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=96.65  E-value=0.00094  Score=56.00  Aligned_cols=52  Identities=19%  Similarity=0.158  Sum_probs=41.3

Q ss_pred             HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC
Q 037818          120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI  175 (199)
Q Consensus       120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~  175 (199)
                      +..+++.++ .....+|||||||+|.++..++++..  + ++.+|. +..++.+++.
T Consensus        96 ~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~g~--~-v~gvD~s~~~~~~a~~~  148 (416)
T 4e2x_A           96 ARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEAGV--R-HLGFEPSSGVAAKAREK  148 (416)
T ss_dssp             HHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHTTC--E-EEEECCCHHHHHHHHTT
T ss_pred             HHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHcCC--c-EEEECCCHHHHHHHHHc
Confidence            445667766 66678999999999999999998744  7 899998 5677777654

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=96.63  E-value=0.00036  Score=58.46  Aligned_cols=66  Identities=20%  Similarity=0.167  Sum_probs=51.1

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------C-CceEEeCCCCCCCC------c-ccE
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------L-GVTHIGGDTFKSIP------A-ADA  194 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~-ri~~~~gd~f~~~P------~-aD~  194 (199)
                      ....+|||+|||+|.++..+++.. ..+ ++.+|. |..++.++++       + +++++.+|.++..+      . .|+
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g-~~~-V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~  296 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGG-CSQ-VVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDV  296 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTT-CSE-EEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCC-CCE-EEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCE
Confidence            345799999999999999999875 446 899998 6777777642       2 78999999987322      2 498


Q ss_pred             EEec
Q 037818          195 IFMK  198 (199)
Q Consensus       195 ~~l~  198 (199)
                      +++.
T Consensus       297 Ii~d  300 (396)
T 3c0k_A          297 IVMD  300 (396)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            8873

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=96.61  E-value=0.0011  Score=56.21  Aligned_cols=71  Identities=14%  Similarity=0.097  Sum_probs=53.7

Q ss_pred             hhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCCC---CCc--cc
Q 037818          125 DGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFKS---IPA--AD  193 (199)
Q Consensus       125 ~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~~---~P~--aD  193 (199)
                      ..++ .....+|+|+|||+|..+..+++..|+.+ ++.+|. |..++.++++     -+++++.+|+.+.   ++.  .|
T Consensus       240 ~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~-v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD  317 (429)
T 1sqg_A          240 TWLA-PQNGEHILDLCAAPGGKTTHILEVAPEAQ-VVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFD  317 (429)
T ss_dssp             HHHC-CCTTCEEEEESCTTCHHHHHHHHHCTTCE-EEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEE
T ss_pred             HHcC-CCCcCeEEEECCCchHHHHHHHHHcCCCE-EEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCC
Confidence            3344 44557999999999999999999999988 999997 5555555432     3589999999863   343  49


Q ss_pred             EEEe
Q 037818          194 AIFM  197 (199)
Q Consensus       194 ~~~l  197 (199)
                      +|++
T Consensus       318 ~Vl~  321 (429)
T 1sqg_A          318 RILL  321 (429)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8885

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=96.61  E-value=0.002  Score=51.57  Aligned_cols=64  Identities=25%  Similarity=0.220  Sum_probs=51.7

Q ss_pred             HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC--CCceEEeCCCCC
Q 037818          120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI--LGVTHIGGDTFK  187 (199)
Q Consensus       120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~--~ri~~~~gd~f~  187 (199)
                      ...+++.+. ......+||+++|.|.++..++++  +.+ .+.+|. |..++.+++.  +|++++.+||-+
T Consensus        11 l~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~--~g~-VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~   77 (285)
T 1wg8_A           11 YQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGR-VIGLDQDPEAVARAKGLHLPGLTVVQGNFRH   77 (285)
T ss_dssp             HHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHHTCCTTEEEEESCGGG
T ss_pred             HHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC--CCE-EEEEeCCHHHHHHHHhhccCCEEEEECCcch
Confidence            456677776 666789999999999999999998  678 999997 6666555322  699999999964

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=96.59  E-value=0.002  Score=46.48  Aligned_cols=54  Identities=19%  Similarity=0.135  Sum_probs=39.9

Q ss_pred             CcceEEEecCCccH-HHHHHHHHCCCCCeeeeccc-hHHHhcCCCCCCceEEeCCCCCCCC----cccEEE
Q 037818          132 GVKQLVDVGGSAGD-CLRMILQKHRFICEGINFDL-PEVVGEAPSILGVTHIGGDTFKSIP----AADAIF  196 (199)
Q Consensus       132 ~~~~vvDvGGG~G~-~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~~ri~~~~gd~f~~~P----~aD~~~  196 (199)
                      ...++||||||+|. .+..|++. -+.. ++..|+ |..++         ++..|+|++.+    .+|+++
T Consensus        35 ~~~rVlEVG~G~g~~vA~~La~~-~g~~-V~atDInp~Av~---------~v~dDiF~P~~~~Y~~~DLIY   94 (153)
T 2k4m_A           35 PGTRVVEVGAGRFLYVSDYIRKH-SKVD-LVLTDIKPSHGG---------IVRDDITSPRMEIYRGAALIY   94 (153)
T ss_dssp             SSSEEEEETCTTCCHHHHHHHHH-SCCE-EEEECSSCSSTT---------EECCCSSSCCHHHHTTEEEEE
T ss_pred             CCCcEEEEccCCChHHHHHHHHh-CCCe-EEEEECCccccc---------eEEccCCCCcccccCCcCEEE
Confidence            34699999999995 66666653 5677 888885 54444         88999999766    358773

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=96.57  E-value=0.0005  Score=54.73  Aligned_cols=40  Identities=15%  Similarity=0.101  Sum_probs=28.8

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCC
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAP  173 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~  173 (199)
                      ...+|||||||+|.+ ..++...+..+ ++.+|+ |..++.++
T Consensus        71 ~~~~vLDiGcG~G~~-~~l~~~~~~~~-v~gvD~s~~~l~~a~  111 (289)
T 2g72_A           71 SGRTLIDIGSGPTVY-QLLSACSHFED-ITMTDFLEVNRQELG  111 (289)
T ss_dssp             CCSEEEEETCTTCCG-GGTTGGGGCSE-EEEECSCHHHHHHHH
T ss_pred             CCCeEEEECCCcChH-HHHhhccCCCe-EEEeCCCHHHHHHHH
Confidence            447999999999994 34444455567 999998 56665544

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=96.55  E-value=0.0012  Score=59.16  Aligned_cols=95  Identities=16%  Similarity=0.066  Sum_probs=59.4

Q ss_pred             cccccccCchhHHHHHHHHhccchhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHH----C---------CCCCee
Q 037818           94 AYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQK----H---------RFICEG  160 (199)
Q Consensus        94 ~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~----~---------P~l~~~  160 (199)
                      .||.+.+|+-+-..|.+|+..       .+.+.++.-.+...|+|||||+|.+....+++    .         ...+ +
T Consensus       378 tYe~fekD~vRy~~Y~~AI~~-------al~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~k-V  449 (745)
T 3ua3_A          378 VYNTFEQDQIKYDVYGEAVVG-------ALKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVK-L  449 (745)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHH-------HHHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEE-E
T ss_pred             HHHHHcCChhhHHHHHHHHHH-------HHHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccE-E
Confidence            367777888777778877642       12222110124578999999999996543332    2         2335 7


Q ss_pred             eeccch-HHHhcCC-----C-CCCceEEeCCCCC-CC------Cc-ccEEE
Q 037818          161 INFDLP-EVVGEAP-----S-ILGVTHIGGDTFK-SI------PA-ADAIF  196 (199)
Q Consensus       161 ~v~Dlp-~v~~~a~-----~-~~ri~~~~gd~f~-~~------P~-aD~~~  196 (199)
                      +.+|-- ..+...+     . .++|+++.||+-+ .+      |+ +|+++
T Consensus       450 yAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIV  500 (745)
T 3ua3_A          450 YIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIV  500 (745)
T ss_dssp             EEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEE
T ss_pred             EEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEE
Confidence            777763 2222211     1 2789999999987 56      55 69986

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=96.51  E-value=0.0025  Score=50.78  Aligned_cols=41  Identities=15%  Similarity=0.224  Sum_probs=30.2

Q ss_pred             CcceEEEecCCccHHHH----HHHHHCCCCCee--eeccc-hHHHhcCC
Q 037818          132 GVKQLVDVGGSAGDCLR----MILQKHRFICEG--INFDL-PEVVGEAP  173 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~----~l~~~~P~l~~~--~v~Dl-p~v~~~a~  173 (199)
                      ...+|||||||+|.++.    .++.++|+.+ +  +.+|. ++.++.++
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~-v~~~~vD~S~~ml~~a~   99 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVC-INNEVVEPSAEQIAKYK   99 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCE-EEEEEECSCHHHHHHHH
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCce-eeEEEEeCCHHHHHHHH
Confidence            34699999999997544    5566788885 5  99996 55565554

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=96.34  E-value=0.0037  Score=51.88  Aligned_cols=64  Identities=17%  Similarity=0.156  Sum_probs=49.0

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCCCCceEEeCCCCCCCCc---ccEEE
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPA---ADAIF  196 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~~ri~~~~gd~f~~~P~---aD~~~  196 (199)
                      +....++||+|+++|.++..++++  ..+ ++.+|.-+.-......++|+++.+|.|+-.|.   .|+++
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~-V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vv  275 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKR--NMW-VYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMV  275 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHT--TCE-EEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHC--CCE-EEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEE
Confidence            345689999999999999999988  567 99999643333334568999999999985443   37765

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=96.27  E-value=0.0014  Score=56.18  Aligned_cols=72  Identities=7%  Similarity=-0.057  Sum_probs=54.0

Q ss_pred             HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCC-CCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC-C--CCc
Q 037818          123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK-S--IPA  191 (199)
Q Consensus       123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~-~--~P~  191 (199)
                      +...++ .....+|||+|||+|..+..+++..++ -+ ++.+|. |..++.++++      . |+++.+|..+ +  .+.
T Consensus        93 ~a~~L~-~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~-V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~  169 (464)
T 3m6w_A           93 VGVLLD-PKPGERVLDLAAAPGGKTTHLAARMGGKGL-LLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGT  169 (464)
T ss_dssp             HHHHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSE-EEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCS
T ss_pred             HHHhcC-cCCCCEEEEEcCCcCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccc
Confidence            334444 455689999999999999999999876 56 899997 5666666543      4 8999999875 2  334


Q ss_pred             -ccEEEe
Q 037818          192 -ADAIFM  197 (199)
Q Consensus       192 -aD~~~l  197 (199)
                       .|+|++
T Consensus       170 ~FD~Il~  176 (464)
T 3m6w_A          170 YFHRVLL  176 (464)
T ss_dssp             CEEEEEE
T ss_pred             cCCEEEE
Confidence             498885

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=96.26  E-value=0.001  Score=59.87  Aligned_cols=64  Identities=14%  Similarity=0.049  Sum_probs=49.8

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC--------CCceEEeCCCCCCC---Cc-ccEEEe
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI--------LGVTHIGGDTFKSI---PA-ADAIFM  197 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~--------~ri~~~~gd~f~~~---P~-aD~~~l  197 (199)
                      ..++|||+|||+|.++..+++... -+ ++.+|+ |..++.++++        ++++++.+|.++.+   .. .|+|++
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga-~~-V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~  615 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGA-RS-TTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFI  615 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTC-SE-EEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred             CCCcEEEeeechhHHHHHHHHCCC-CE-EEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEE
Confidence            347999999999999999998543 35 899998 6777777652        48999999999732   22 399887

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=96.15  E-value=0.0055  Score=52.67  Aligned_cols=65  Identities=17%  Similarity=0.129  Sum_probs=51.1

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCC-CCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC-C--CCc-ccEEEe
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK-S--IPA-ADAIFM  197 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~-~--~P~-aD~~~l  197 (199)
                      ...+|||+|||+|..+..+++..++ -+ ++.+|. |..++.++++      ++|+++.+|..+ +  .+. .|+|++
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~-V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~  193 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGA-ILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILL  193 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSE-EEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEE
Confidence            5679999999999999999999764 66 899997 5556665542      579999999976 2  344 499886

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=96.14  E-value=0.0048  Score=50.04  Aligned_cols=67  Identities=12%  Similarity=0.081  Sum_probs=50.9

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCC---CC---cccEE
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKS---IP---AADAI  195 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~---~P---~aD~~  195 (199)
                      .....+|||+|+|+|..+..+++.. +.-+ ++.+|. |..++.++++      ++|+++.+|+.+-   .+   ..|.|
T Consensus       100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~-V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~V  178 (309)
T 2b9e_A          100 PPPGSHVIDACAAPGNKTSHLAALLKNQGK-IFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYI  178 (309)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEE
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEE
Confidence            4555799999999999999999985 5567 999997 5556655542      6799999998762   11   24888


Q ss_pred             Ee
Q 037818          196 FM  197 (199)
Q Consensus       196 ~l  197 (199)
                      ++
T Consensus       179 l~  180 (309)
T 2b9e_A          179 LL  180 (309)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=96.04  E-value=0.0092  Score=47.99  Aligned_cols=58  Identities=17%  Similarity=0.139  Sum_probs=40.2

Q ss_pred             HHHhhhCCCCC-CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhc-CCCCCCceEE
Q 037818          121 TSVLDGYNGFK-GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGE-APSILGVTHI  181 (199)
Q Consensus       121 ~~~~~~~~~~~-~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~-a~~~~ri~~~  181 (199)
                      ..+++.+. .. ...++||||||+|.++..+++. +.-+ ++.+|. |..++. .+..+|+...
T Consensus        74 ~~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~-V~aVDvs~~mL~~a~r~~~rv~~~  134 (291)
T 3hp7_A           74 EKALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GAKL-VYAVDVGTNQLVWKLRQDDRVRSM  134 (291)
T ss_dssp             HHHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSE-EEEECSSSSCSCHHHHTCTTEEEE
T ss_pred             HHHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CCCE-EEEEECCHHHHHHHHHhCccccee
Confidence            34556665 43 4479999999999999988886 5556 899998 455554 3334565443

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=95.93  E-value=0.0021  Score=54.92  Aligned_cols=90  Identities=10%  Similarity=-0.007  Sum_probs=60.2

Q ss_pred             HHHHHHHhccchhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCC-CCeeeeccc-hHHHhcCCCC------CC
Q 037818          106 GLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVGEAPSI------LG  177 (199)
Q Consensus       106 ~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~~v~Dl-p~v~~~a~~~------~r  177 (199)
                      ..|....-........-+...++ .....+|||+|||+|..+..+++..++ -+ ++.+|. |..++.++++      .+
T Consensus        80 ~~~~~G~~~vQd~ss~l~~~~L~-~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~-V~AvDis~~rl~~~~~n~~r~g~~n  157 (456)
T 3m4x_A           80 FLHQAGYEYSQEPSAMIVGTAAA-AKPGEKVLDLCAAPGGKSTQLAAQMKGKGL-LVTNEIFPKRAKILSENIERWGVSN  157 (456)
T ss_dssp             HHHHTTSCEECCTTTHHHHHHHC-CCTTCEEEESSCTTCHHHHHHHHHHTTCSE-EEEECSSHHHHHHHHHHHHHHTCSS
T ss_pred             hHHhCCcEEEECHHHHHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHcCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCc
Confidence            34544433332222233334444 455689999999999999999998775 56 899997 5566666542      57


Q ss_pred             ceEEeCCCCC--C-CCc-ccEEEe
Q 037818          178 VTHIGGDTFK--S-IPA-ADAIFM  197 (199)
Q Consensus       178 i~~~~gd~f~--~-~P~-aD~~~l  197 (199)
                      |+++.+|..+  + .+. .|+|++
T Consensus       158 v~v~~~Da~~l~~~~~~~FD~Il~  181 (456)
T 3m4x_A          158 AIVTNHAPAELVPHFSGFFDRIVV  181 (456)
T ss_dssp             EEEECCCHHHHHHHHTTCEEEEEE
T ss_pred             eEEEeCCHHHhhhhccccCCEEEE
Confidence            9999999875  1 344 498876

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=95.92  E-value=0.0028  Score=53.14  Aligned_cols=62  Identities=16%  Similarity=0.190  Sum_probs=47.0

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCCC---CCc-ccEEEe
Q 037818          133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFKS---IPA-ADAIFM  197 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~~---~P~-aD~~~l  197 (199)
                      ..+|||+|||+|.++..+++.  ..+ ++.+|+ |..++.++++     -..++..+|.++.   .+. .|+|++
T Consensus       215 g~~VLDlg~GtG~~sl~~a~~--ga~-V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~  286 (393)
T 4dmg_A          215 GERVLDVYSYVGGFALRAARK--GAY-ALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLL  286 (393)
T ss_dssp             TCEEEEESCTTTHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEE
T ss_pred             CCeEEEcccchhHHHHHHHHc--CCe-EEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEE
Confidence            589999999999999999987  456 889997 6777777653     1235669999863   233 488886

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=95.82  E-value=0.011  Score=47.56  Aligned_cols=59  Identities=15%  Similarity=0.137  Sum_probs=44.1

Q ss_pred             CCCcceEEEecC------CccHHHHHHHHHCC-CCCeeeeccchHHHhcCCCCCCceE-EeCCCCC-CCCc-ccEEEe
Q 037818          130 FKGVKQLVDVGG------SAGDCLRMILQKHR-FICEGINFDLPEVVGEAPSILGVTH-IGGDTFK-SIPA-ADAIFM  197 (199)
Q Consensus       130 ~~~~~~vvDvGG------G~G~~~~~l~~~~P-~l~~~~v~Dlp~v~~~a~~~~ri~~-~~gd~f~-~~P~-aD~~~l  197 (199)
                      .....+||||||      |+|.  ..+++..| +.+ ++.+|+-+.      .+++++ +.+|+.+ +++. .|+|+.
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~-V~gvDis~~------v~~v~~~i~gD~~~~~~~~~fD~Vvs  129 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTL-LVDSDLNDF------VSDADSTLIGDCATVHTANKWDLIIS  129 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCE-EEEEESSCC------BCSSSEEEESCGGGCCCSSCEEEEEE
T ss_pred             CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCE-EEEEECCCC------CCCCEEEEECccccCCccCcccEEEE
Confidence            556679999999      4477  44566777 678 999998554      257999 9999987 4444 499875

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=95.59  E-value=0.0023  Score=53.63  Aligned_cols=67  Identities=9%  Similarity=-0.064  Sum_probs=51.9

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CC-ceEEeCCCCCC----CCc-ccEEEe
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LG-VTHIGGDTFKS----IPA-ADAIFM  197 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~r-i~~~~gd~f~~----~P~-aD~~~l  197 (199)
                      ...+|||+++|+|.++..++++.+...+++.+|. |..++.++++       ++ ++++.+|.++-    .+. .|+|++
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l  131 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL  131 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence            3479999999999999999998776433899998 7777777753       45 99999998752    233 498886


Q ss_pred             c
Q 037818          198 K  198 (199)
Q Consensus       198 ~  198 (199)
                      .
T Consensus       132 D  132 (392)
T 3axs_A          132 D  132 (392)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=95.48  E-value=0.0088  Score=49.80  Aligned_cols=54  Identities=15%  Similarity=0.105  Sum_probs=43.4

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC--------------CCceEEeCCCCC
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI--------------LGVTHIGGDTFK  187 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~--------------~ri~~~~gd~f~  187 (199)
                      ..++||=||||.|..++++++ ||.-+ ++++|+ |.|++.+++.              +|++.+.+|-++
T Consensus       205 ~pkrVLIIGgGdG~~~revlk-h~~~~-V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~  273 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVK-LKPKM-VTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIP  273 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHT-TCCSE-EEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHH
T ss_pred             CCCeEEEECCCcHHHHHHHHh-cCCce-eEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHH
Confidence            358999999999999999997 56566 999997 7888876531              578888888764

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=95.47  E-value=0.01  Score=46.75  Aligned_cols=76  Identities=13%  Similarity=0.047  Sum_probs=46.8

Q ss_pred             HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHH--CCCCC-eeeeccchHHHhcCCCCCCc---eEEeC-CCCCCCCc-
Q 037818          120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQK--HRFIC-EGINFDLPEVVGEAPSILGV---THIGG-DTFKSIPA-  191 (199)
Q Consensus       120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~--~P~l~-~~~v~Dlp~v~~~a~~~~ri---~~~~g-d~f~~~P~-  191 (199)
                      ...|-+.+ .+....+|||+||+.|.++.-+++.  -..++ +.+..|+| ..+.....+.+   .++.| ||++.-|. 
T Consensus        62 L~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~-~~P~~~~~~Gv~~i~~~~G~Df~~~~~~~  139 (269)
T 2px2_A           62 LRWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGH-EEPMLMQSYGWNIVTMKSGVDVFYKPSEI  139 (269)
T ss_dssp             HHHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTS-CCCCCCCSTTGGGEEEECSCCGGGSCCCC
T ss_pred             HHHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccc-cCCCcccCCCceEEEeeccCCccCCCCCC
Confidence            34555665 5777899999999999999988885  32323 12455542 11111111454   55557 99974443 


Q ss_pred             ccEEEe
Q 037818          192 ADAIFM  197 (199)
Q Consensus       192 aD~~~l  197 (199)
                      .|+++-
T Consensus       140 ~DvVLS  145 (269)
T 2px2_A          140 SDTLLC  145 (269)
T ss_dssp             CSEEEE
T ss_pred             CCEEEe
Confidence            598873

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=95.42  E-value=0.031  Score=45.81  Aligned_cols=66  Identities=18%  Similarity=0.161  Sum_probs=54.5

Q ss_pred             HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCC--CCCceEEeCCCCC
Q 037818          120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPS--ILGVTHIGGDTFK  187 (199)
Q Consensus       120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~--~~ri~~~~gd~f~  187 (199)
                      ...+++.+. ......+||...|.|..+.+++++. |+.+ .+.+|. |..++.++.  .+|++++.++|-+
T Consensus        46 l~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~Gr-Vig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~  115 (347)
T 3tka_A           46 LDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGR-LLAIDRDPQAIAVAKTIDDPRFSIIHGPFSA  115 (347)
T ss_dssp             THHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCE-EEEEESCHHHHHHHTTCCCTTEEEEESCGGG
T ss_pred             HHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCE-EEEEECCHHHHHHHHhhcCCcEEEEeCCHHH
Confidence            456777776 5666899999999999999999985 8889 999997 677777753  2799999999865

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=95.05  E-value=0.047  Score=42.57  Aligned_cols=75  Identities=12%  Similarity=0.082  Sum_probs=51.8

Q ss_pred             HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhc----CCC--CCCceEEeC-CCCC--CCC
Q 037818          120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGE----APS--ILGVTHIGG-DTFK--SIP  190 (199)
Q Consensus       120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~----a~~--~~ri~~~~g-d~f~--~~P  190 (199)
                      ...+.+.+- +.....|||+||++|.++.-++....--+ +..+|+-..--.    .+.  .+-|+|..+ |+|.  +.|
T Consensus        67 L~ei~ek~~-l~~g~~VvDLGaapGGWSq~~a~~~g~~~-V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~  144 (267)
T 3p8z_A           67 LQWFVERNM-VIPEGRVIDLGCGRGGWSYYCAGLKKVTE-VRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEK  144 (267)
T ss_dssp             HHHHHHTTS-SCCCEEEEEESCTTSHHHHHHHTSTTEEE-EEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCC
T ss_pred             HHHHHHhcC-CCCCCEEEEcCCCCCcHHHHHHHhcCCCE-EEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCcc
Confidence            345566664 66667999999999999997777665557 888887322111    111  278999999 9874  333


Q ss_pred             cccEEEe
Q 037818          191 AADAIFM  197 (199)
Q Consensus       191 ~aD~~~l  197 (199)
                       .|+++.
T Consensus       145 -~Dtllc  150 (267)
T 3p8z_A          145 -CDTLLC  150 (267)
T ss_dssp             -CSEEEE
T ss_pred             -ccEEEE
Confidence             488764

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=94.55  E-value=0.025  Score=49.28  Aligned_cols=76  Identities=16%  Similarity=0.067  Sum_probs=51.8

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCC------------------CCCeeeeccc-hHHHhcCCCC------
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHR------------------FICEGINFDL-PEVVGEAPSI------  175 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P------------------~l~~~~v~Dl-p~v~~~a~~~------  175 (199)
                      ..+++..+ -....+|+|.+||+|.++..+.+...                  ..+ .+.+|+ |..++.|+.+      
T Consensus       159 ~~mv~~l~-p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~-i~GiEid~~~~~lA~~nl~l~gi  236 (541)
T 2ar0_A          159 KTIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRA-FIGLELVPGTRRLALMNCLLHDI  236 (541)
T ss_dssp             HHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTS-EEEEESCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHhc-cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcce-EEEEcCCHHHHHHHHHHHHHhCC
Confidence            33444444 34457999999999999998877532                  236 889997 6666666531      


Q ss_pred             C-----CceEEeCCCCCC--C--CcccEEEec
Q 037818          176 L-----GVTHIGGDTFKS--I--PAADAIFMK  198 (199)
Q Consensus       176 ~-----ri~~~~gd~f~~--~--P~aD~~~l~  198 (199)
                      +     ++.+..+|.+..  .  +..|+|+.+
T Consensus       237 ~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~N  268 (541)
T 2ar0_A          237 EGNLDHGGAIRLGNTLGSDGENLPKAHIVATN  268 (541)
T ss_dssp             CCBGGGTBSEEESCTTSHHHHTSCCEEEEEEC
T ss_pred             CccccccCCeEeCCCcccccccccCCeEEEEC
Confidence            3     278999999962  2  235988864

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=94.40  E-value=0.015  Score=48.38  Aligned_cols=64  Identities=9%  Similarity=-0.164  Sum_probs=49.9

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC---------------------CCceEEeCCCCCC--
Q 037818          133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI---------------------LGVTHIGGDTFKS--  188 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~---------------------~ri~~~~gd~f~~--  188 (199)
                      ..+|||+|+|+|.++..++++.|..+ ++.+|. |..++.++++                     ++++++.+|..+.  
T Consensus        48 ~~~VLDl~aGtG~~~l~~a~~~~~~~-V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~  126 (378)
T 2dul_A           48 PKIVLDALSATGIRGIRFALETPAEE-VWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  126 (378)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCSE-EEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCEEEECCCchhHHHHHHHHhCCCCe-EEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence            46999999999999999999999888 999998 6666665532                     2388999998752  


Q ss_pred             -CCc-ccEEEe
Q 037818          189 -IPA-ADAIFM  197 (199)
Q Consensus       189 -~P~-aD~~~l  197 (199)
                       .+. .|+|++
T Consensus       127 ~~~~~fD~I~l  137 (378)
T 2dul_A          127 ERHRYFHFIDL  137 (378)
T ss_dssp             HSTTCEEEEEE
T ss_pred             hccCCCCEEEe
Confidence             233 488875

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=94.08  E-value=0.1  Score=42.95  Aligned_cols=54  Identities=7%  Similarity=-0.062  Sum_probs=39.7

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCCeeeeccch----HHHhcCCCCCCceEEeCCCCC
Q 037818          133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP----EVVGEAPSILGVTHIGGDTFK  187 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp----~v~~~a~~~~ri~~~~gd~f~  187 (199)
                      ...||+||.|.|.+...|+++...-+ .++++..    ..++.....+|++.+.+|+++
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~-vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~  116 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYCPRQ-YSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD  116 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSE-EEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred             CCEEEEECCCCCHHHHHHHhhCCCCE-EEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence            47899999999999999999754445 6677752    222211135899999999975

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=94.07  E-value=0.13  Score=42.75  Aligned_cols=65  Identities=23%  Similarity=0.211  Sum_probs=44.2

Q ss_pred             cceEEEecCCccHHHHHH--------HHHC-------CCCCeeeeccchHH--------HhcCCC----------C-CC-
Q 037818          133 VKQLVDVGGSAGDCLRMI--------LQKH-------RFICEGINFDLPEV--------VGEAPS----------I-LG-  177 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l--------~~~~-------P~l~~~~v~Dlp~v--------~~~a~~----------~-~r-  177 (199)
                      .-+|+|+|||+|..+..+        .+++       |.++ ++.-|||..        ++..++          . .+ 
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~-v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~  131 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFT-AFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS  131 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEE-EEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCcee-EEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence            578999999999866655        3344       8888 999999842        233221          0 11 


Q ss_pred             --ceEEeCCCCC-CCCcc--cEEEec
Q 037818          178 --VTHIGGDTFK-SIPAA--DAIFMK  198 (199)
Q Consensus       178 --i~~~~gd~f~-~~P~a--D~~~l~  198 (199)
                        +.-++|.|+. -+|..  |+++-+
T Consensus       132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss  157 (374)
T 3b5i_A          132 YFVAGVPGSFYRRLFPARTIDFFHSA  157 (374)
T ss_dssp             SEEEEEESCTTSCCSCTTCEEEEEEE
T ss_pred             eEEEecChhhhcccCCCcceEEEEec
Confidence              4567899997 58874  877643

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=94.06  E-value=0.058  Score=49.20  Aligned_cols=68  Identities=12%  Similarity=0.000  Sum_probs=47.2

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCC---CCeeeeccc-hHHHhcC--C----C------CCCceEEeCCCCCC--CCc
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRF---ICEGINFDL-PEVVGEA--P----S------ILGVTHIGGDTFKS--IPA  191 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~---l~~~~v~Dl-p~v~~~a--~----~------~~ri~~~~gd~f~~--~P~  191 (199)
                      +....+|+|.|||+|.++.+++++.+.   .+ .+.+|. |..++.|  +    .      .+...+...|++++  .+.
T Consensus       319 l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~-IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~  397 (878)
T 3s1s_A          319 LTEDEVISDPAAGSGNLLATVSAGFNNVMPRQ-IWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDF  397 (878)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHTSTTCCGGG-EEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGG
T ss_pred             CCCCCEEEECCCCccHHHHHHHHHhcccCCCe-EEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhccccccc
Confidence            344579999999999999999998874   46 789997 5566555  2    1      12345667777762  222


Q ss_pred             --ccEEEec
Q 037818          192 --ADAIFMK  198 (199)
Q Consensus       192 --aD~~~l~  198 (199)
                        .|+|+.+
T Consensus       398 ~kFDVVIgN  406 (878)
T 3s1s_A          398 ANVSVVVMN  406 (878)
T ss_dssp             TTEEEEEEC
T ss_pred             CCCCEEEEC
Confidence              4988764

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=93.71  E-value=0.049  Score=43.36  Aligned_cols=44  Identities=16%  Similarity=0.100  Sum_probs=33.9

Q ss_pred             HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc
Q 037818          120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL  165 (199)
Q Consensus       120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl  165 (199)
                      ...+.+.+- +....+|||||||.|.++.-+++..+-.+ ++.+|+
T Consensus        79 L~ei~eK~~-Lk~~~~VLDLGaAPGGWsQvAa~~~gv~s-V~Gvdv  122 (282)
T 3gcz_A           79 LRWMEERGY-VKPTGIVVDLGCGRGGWSYYAASLKNVKK-VMAFTL  122 (282)
T ss_dssp             HHHHHHTTS-CCCCEEEEEETCTTCHHHHHHHTSTTEEE-EEEECC
T ss_pred             HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCe-eeeEEe
Confidence            345666664 67777999999999999999888777656 666665

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=93.43  E-value=0.037  Score=45.27  Aligned_cols=55  Identities=18%  Similarity=0.086  Sum_probs=47.0

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCC---------------------------CCCceEEeCC
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPS---------------------------ILGVTHIGGD  184 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~---------------------------~~ri~~~~gd  184 (199)
                      +...||.+|||.......+...+|+++ .+=+|+|+|++.-++                           .++.+++++|
T Consensus        97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~-~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D  175 (334)
T 1rjd_A           97 EKVQVVNLGCGSDLRMLPLLQMFPHLA-YVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD  175 (334)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCTTEE-EEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred             CCcEEEEeCCCCccHHHHhcCcCCCCE-EEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence            458999999999999999999999998 999999998764321                           1689999999


Q ss_pred             CCC
Q 037818          185 TFK  187 (199)
Q Consensus       185 ~f~  187 (199)
                      +.+
T Consensus       176 L~d  178 (334)
T 1rjd_A          176 LND  178 (334)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            987

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=93.43  E-value=0.039  Score=48.10  Aligned_cols=66  Identities=18%  Similarity=0.101  Sum_probs=49.7

Q ss_pred             CcceEEEecCCccHHHHHHHHHCC---CCCeeeeccc-hHHHhcCCCC--------CCceEEeCCCCCC-CC---c--cc
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHR---FICEGINFDL-PEVVGEAPSI--------LGVTHIGGDTFKS-IP---A--AD  193 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P---~l~~~~v~Dl-p~v~~~a~~~--------~ri~~~~gd~f~~-~P---~--aD  193 (199)
                      ...+|+|.+||+|.++.++.+...   ..+ ...+|+ |.++..|+.+        +++.+..+|.+.. +|   .  .|
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~-i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD  299 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVV-YFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFD  299 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCE-EEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBS
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCce-EEEEECcHHHHHHHHHHHHHcCCCcCccceEecceeccccccccccccc
Confidence            346999999999999999998853   556 889997 6666666531        4678999999963 33   2  49


Q ss_pred             EEEec
Q 037818          194 AIFMK  198 (199)
Q Consensus       194 ~~~l~  198 (199)
                      +|+.+
T Consensus       300 ~IvaN  304 (542)
T 3lkd_A          300 GVLMN  304 (542)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            98864

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=93.37  E-value=0.028  Score=49.08  Aligned_cols=75  Identities=15%  Similarity=0.085  Sum_probs=50.3

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCC---------------CCCeeeeccc-hHHHhcCCCC-------CC
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHR---------------FICEGINFDL-PEVVGEAPSI-------LG  177 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P---------------~l~~~~v~Dl-p~v~~~a~~~-------~r  177 (199)
                      ..+++..+ -.. .+|+|.+||+|.++.++.+..+               ..+ ...+|+ |.++..|+.+       .+
T Consensus       235 ~lmv~ll~-p~~-~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~-i~G~Eid~~~~~lA~~Nl~l~gi~~~  311 (544)
T 3khk_A          235 TLIVEMLE-PYK-GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQIS-VYGQESNPTTWKLAAMNMVIRGIDFN  311 (544)
T ss_dssp             HHHHHHHC-CCS-EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEE-EEECCCCHHHHHHHHHHHHHTTCCCB
T ss_pred             HHHHHHHh-cCC-CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhce-EEEEeCCHHHHHHHHHHHHHhCCCcc
Confidence            34444443 222 4999999999999998866443               456 788997 6667666532       34


Q ss_pred             ceEEeCCCCC-C-CCc--ccEEEec
Q 037818          178 VTHIGGDTFK-S-IPA--ADAIFMK  198 (199)
Q Consensus       178 i~~~~gd~f~-~-~P~--aD~~~l~  198 (199)
                      |.+..+|.+. + .+.  .|+|+.+
T Consensus       312 i~i~~gDtL~~~~~~~~~fD~Iv~N  336 (544)
T 3khk_A          312 FGKKNADSFLDDQHPDLRADFVMTN  336 (544)
T ss_dssp             CCSSSCCTTTSCSCTTCCEEEEEEC
T ss_pred             cceeccchhcCcccccccccEEEEC
Confidence            5558899885 3 333  4988864

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=92.14  E-value=0.11  Score=41.18  Aligned_cols=36  Identities=11%  Similarity=0.032  Sum_probs=26.9

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCC
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFIC  158 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~  158 (199)
                      .+.+..- +....+|||+|||.|.++.-+++..+--+
T Consensus        65 ei~ek~~-l~~~~~VLDLGaAPGGWSQvAa~~~~~~~  100 (277)
T 3evf_A           65 WFHERGY-VKLEGRVIDLGCGRGGWCYYAAAQKEVSG  100 (277)
T ss_dssp             HHHHTTS-SCCCEEEEEETCTTCHHHHHHHTSTTEEE
T ss_pred             HHHHhCC-CCCCCEEEEecCCCCHHHHHHHHhcCCCc
Confidence            4444443 66667999999999999998887765444

>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62

Probab=91.92  E-value=0.034  Score=35.55  Aligned_cols=37  Identities=24%  Similarity=0.259  Sum_probs=31.1

Q ss_pred             cccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           11 KKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        11 lf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      |.+.|. .|..|++|||+.+++  ++.  -++|-|+.|...|
T Consensus         7 Il~~L~~~g~vsv~eLa~~l~V--S~~--TIRrdL~~Le~~G   44 (78)
T 1xn7_A            7 VRDLLALRGRMEAAQISQTLNT--PQP--MINAMLQQLESMG   44 (78)
T ss_dssp             HHHHHHHSCSBCHHHHHHHTTC--CHH--HHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCcHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            345555 489999999999999  776  8999999998877

>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}

Probab=91.85  E-value=0.032  Score=36.46  Aligned_cols=37  Identities=19%  Similarity=0.268  Sum_probs=31.7

Q ss_pred             cccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           11 KKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        11 lf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      |.+.|. .|..|+.|||+.+++  ++.  -++|.|+.|...|
T Consensus         7 Il~~L~~~g~vsv~eLA~~l~V--S~~--TIRrDL~~Le~~G   44 (87)
T 2k02_A            7 VRDMLALQGRMEAKQLSARLQT--PQP--LIDAMLERMEAMG   44 (87)
T ss_dssp             HHHHHHHSCSEEHHHHHHHTTC--CHH--HHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCCcHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            445555 489999999999999  776  8999999999988

>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A

Probab=91.55  E-value=0.11  Score=34.35  Aligned_cols=40  Identities=18%  Similarity=0.111  Sum_probs=33.7

Q ss_pred             ccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            8 EGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         8 ~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      ++.|...|.+++.|+.|||+.+|+  ++.  .+.+-|+.|...|
T Consensus        25 r~~Il~~L~~~~~~~~ela~~l~i--s~~--tvs~~L~~L~~~G   64 (102)
T 3pqk_A           25 RLMLVCTLVEGEFSVGELEQQIGI--GQP--TLSQQLGVLRESG   64 (102)
T ss_dssp             HHHHHHHHHTCCBCHHHHHHHHTC--CTT--HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            344666677799999999999999  666  8999999999888

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=91.43  E-value=0.32  Score=39.10  Aligned_cols=74  Identities=18%  Similarity=0.131  Sum_probs=48.1

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHh----cCCCC--CCceEEeC-CCCC--CCCc
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVG----EAPSI--LGVTHIGG-DTFK--SIPA  191 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~----~a~~~--~ri~~~~g-d~f~--~~P~  191 (199)
                      ..+.+.+. +.....||||||++|.++.-++....--+ +..+|+-..--    ..++.  .-|+++.+ |++.  +.| 
T Consensus        84 ~ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~~~gv~~-V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~-  160 (321)
T 3lkz_A           84 RWLVERRF-LEPVGKVIDLGCGRGGWCYYMATQKRVQE-VRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSEC-  160 (321)
T ss_dssp             HHHHHTTS-CCCCEEEEEETCTTCHHHHHHTTCTTEEE-EEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCC-
T ss_pred             HHHHHhcC-CCCCCEEEEeCCCCCcHHHHHHhhcCCCE-EEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCC-
Confidence            45555554 66667999999999999997766665556 88888732211    11111  34888888 8764  333 


Q ss_pred             ccEEEe
Q 037818          192 ADAIFM  197 (199)
Q Consensus       192 aD~~~l  197 (199)
                      .|+++.
T Consensus       161 ~D~ivc  166 (321)
T 3lkz_A          161 CDTLLC  166 (321)
T ss_dssp             CSEEEE
T ss_pred             CCEEEE
Confidence            477764

>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}

Probab=91.00  E-value=0.075  Score=34.92  Aligned_cols=40  Identities=20%  Similarity=0.175  Sum_probs=34.2

Q ss_pred             ccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            8 EGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         8 ~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      ++.|...|.+++.|+.|||+.+|+  ++.  .+.+-|+.|...|
T Consensus        25 r~~Il~~L~~~~~~~~ela~~l~i--s~~--tvs~~L~~L~~~G   64 (98)
T 3jth_A           25 RLQILCMLHNQELSVGELCAKLQL--SQS--ALSQHLAWLRRDG   64 (98)
T ss_dssp             HHHHHHHTTTSCEEHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            455777788899999999999999  655  8999999999888

>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5

Probab=91.00  E-value=0.071  Score=35.01  Aligned_cols=39  Identities=15%  Similarity=0.069  Sum_probs=33.0

Q ss_pred             ccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            8 EGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         8 ~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      +..|+..| +++.|+.|||+.+++  ++.  .+.+.|+.|...|
T Consensus        33 r~~Il~~L-~~~~~~~eLa~~l~i--s~~--tv~~~L~~L~~~G   71 (96)
T 1y0u_A           33 RRKILRML-DKGRSEEEIMQTLSL--SKK--QLDYHLKVLEAGF   71 (96)
T ss_dssp             HHHHHHHH-HTTCCHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred             HHHHHHHH-cCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            34577778 889999999999999  655  8999999999887

>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A

Probab=90.51  E-value=0.067  Score=36.09  Aligned_cols=40  Identities=20%  Similarity=-0.042  Sum_probs=33.7

Q ss_pred             ccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            8 EGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         8 ~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      ++.|+..|.+++.|+.|||+.+|+  ++.  .+.+.|+.|...|
T Consensus        27 r~~IL~~L~~~~~s~~eLa~~lgi--s~s--tvs~~L~~L~~~G   66 (108)
T 2kko_A           27 RLQILDLLAQGERAVEAIATATGM--NLT--TASANLQALKSGG   66 (108)
T ss_dssp             THHHHHHHTTCCEEHHHHHHHHTC--CHH--HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCcCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            345667777889999999999999  665  8999999999888

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=90.07  E-value=0.78  Score=38.19  Aligned_cols=64  Identities=13%  Similarity=0.171  Sum_probs=40.6

Q ss_pred             CchhHHHHHHHHhccchhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHC-------CCCCeeeeccchHHHh
Q 037818          101 MPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-------RFICEGINFDLPEVVG  170 (199)
Q Consensus       101 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-------P~l~~~~v~Dlp~v~~  170 (199)
                      .|+....|-+.++.+-   +..| +... ....-.||++|.|+|.++..+++..       ..++ ..+++..+.+.
T Consensus        54 apeis~~FGe~la~~~---~~~w-~~~g-~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~-y~iVE~Sp~Lr  124 (387)
T 1zkd_A           54 SPEISQMFGELLGLWS---ASVW-KAAD-EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLS-VHLVEINPVLR  124 (387)
T ss_dssp             HHHHCHHHHHHHHHHH---HHHH-HHTT-CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEE-EEEECCCHHHH
T ss_pred             CCchHHHHHHHHHHHH---HHHH-HHcC-CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccE-EEEEecCHHHH
Confidence            3667777877765332   2222 2232 3344579999999999999888752       3446 77888754433

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=89.83  E-value=0.18  Score=42.04  Aligned_cols=64  Identities=14%  Similarity=0.117  Sum_probs=43.4

Q ss_pred             cceEEEecCCccHHHHHHHHH-----------------CCCCCeeeeccch-----------HHH-hc-----CCCCCC-
Q 037818          133 VKQLVDVGGSAGDCLRMILQK-----------------HRFICEGINFDLP-----------EVV-GE-----APSILG-  177 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~-----------------~P~l~~~~v~Dlp-----------~v~-~~-----a~~~~r-  177 (199)
                      .-+|+|+||++|..+..++..                 .|.++ ++.-|||           +.. +.     ....+. 
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~-v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~  131 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQ-IFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSC  131 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEE-EEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSE
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceE-EEecCCCccchHHHHhhhhhhHhhhhhhccCCCCce
Confidence            678999999999877766655                 57888 9999998           111 11     111122 


Q ss_pred             -ceEEeCCCCC-CCCcc--cEEEe
Q 037818          178 -VTHIGGDTFK-SIPAA--DAIFM  197 (199)
Q Consensus       178 -i~~~~gd~f~-~~P~a--D~~~l  197 (199)
                       +.-++|.|++ -+|..  |+++-
T Consensus       132 f~~gvpgSFy~rlfp~~S~d~v~S  155 (384)
T 2efj_A          132 LIGAMPGSFYSRLFPEESMHFLHS  155 (384)
T ss_dssp             EEEECCSCTTSCCSCTTCEEEEEE
T ss_pred             EEEecchhhhhccCCCCceEEEEe
Confidence             3556899997 58884  87764

>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A

Probab=89.80  E-value=0.06  Score=33.16  Aligned_cols=40  Identities=18%  Similarity=0.190  Sum_probs=32.2

Q ss_pred             ccccccccCC--CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            8 EGGKKVRLAN--TPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         8 ~lglf~~L~~--g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      +..|.+.|.+  .++|..|||+.+|+  +..  .+.+.+..|...|
T Consensus        12 ~~~IL~~L~~~~~~~s~~eLA~~lgl--sr~--tv~~~l~~L~~~G   53 (67)
T 2heo_A           12 EQKILQVLSDDGGPVAIFQLVKKCQV--PKK--TLNQVLYRLKKED   53 (67)
T ss_dssp             HHHHHHHHHHHCSCEEHHHHHHHHCS--CHH--HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCCcCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            3456677753  68999999999999  554  8999999998876

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=89.60  E-value=0.18  Score=40.20  Aligned_cols=40  Identities=15%  Similarity=0.068  Sum_probs=31.6

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS  174 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~  174 (199)
                      ....|||++||+|..+.++++..  -+ ++.+|+ |..++.+++
T Consensus       235 ~~~~vlD~f~GsGt~~~~a~~~g--~~-~~g~e~~~~~~~~a~~  275 (297)
T 2zig_A          235 VGDVVLDPFAGTGTTLIAAARWG--RR-ALGVELVPRYAQLAKE  275 (297)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTT--CE-EEEEESCHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHcC--Ce-EEEEeCCHHHHHHHHH
Confidence            34699999999999999988865  46 899998 455665553

>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73

Probab=89.52  E-value=0.076  Score=33.75  Aligned_cols=37  Identities=16%  Similarity=0.052  Sum_probs=30.4

Q ss_pred             cccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           11 KKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        11 lf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      |.+.|. .++.|..|||+.+|+  ++.  .+.+.|+.|...|
T Consensus         5 Il~~L~~~~~~s~~eLa~~lgv--s~~--tv~r~L~~L~~~G   42 (81)
T 2htj_A            5 ILEFLNRHNGGKTAEIAEALAV--TDY--QARYYLLLLEKAG   42 (81)
T ss_dssp             HHHHHHHSCCCCHHHHHHHHTS--CHH--HHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            455554 478999999999999  655  8999999999877

>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A

Probab=89.47  E-value=0.16  Score=35.08  Aligned_cols=40  Identities=18%  Similarity=0.090  Sum_probs=32.3

Q ss_pred             ccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            8 EGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         8 ~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      ++.|+..|.+++.++.+||+.+|+  ++.  .+.+.|+.|...|
T Consensus        48 rl~IL~~L~~~~~s~~ela~~lgi--s~s--tvs~~L~~Le~~G   87 (122)
T 1r1t_A           48 RLRLLSLLARSELCVGDLAQAIGV--SES--AVSHQLRSLRNLR   87 (122)
T ss_dssp             HHHHHHHHTTCCBCHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            445677777788999999999999  555  7888888888888

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=89.25  E-value=0.32  Score=38.96  Aligned_cols=42  Identities=10%  Similarity=0.149  Sum_probs=32.0

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL  165 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl  165 (199)
                      .+.+. ..+....+||||||++|.|+.-+++..+-.. ++.+|+
T Consensus        72 ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~s-V~Gvdl  113 (300)
T 3eld_A           72 WLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMS-VKGYTL  113 (300)
T ss_dssp             HHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEE-EEEECC
T ss_pred             HHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCce-eeeEEe
Confidence            44444 4456779999999999999999998776555 666666

>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19

Probab=89.19  E-value=0.092  Score=33.85  Aligned_cols=42  Identities=10%  Similarity=-0.012  Sum_probs=32.8

Q ss_pred             hhccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            6 CREGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         6 A~~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      .....|.+.|...+.|+.|||+++|+  +..  .+++.|..|...|
T Consensus        17 ~~~~~IL~lL~~~g~sa~eLAk~Lgi--Sk~--aVr~~L~~Le~eG   58 (82)
T 1oyi_A           17 EIVCEAIKTIGIEGATAAQLTRQLNM--EKR--EVNKALYDLQRSA   58 (82)
T ss_dssp             HHHHHHHHHHSSSTEEHHHHHHHSSS--CHH--HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            34445667777644999999999999  554  8999999998777

>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A

Probab=89.19  E-value=0.092  Score=35.14  Aligned_cols=40  Identities=20%  Similarity=0.115  Sum_probs=33.2

Q ss_pred             ccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            8 EGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         8 ~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      ++.|+..|.+++.|+.|||+.+|+  ++.  .+.+.|+.|...|
T Consensus        28 r~~IL~~L~~~~~~~~ela~~l~i--s~s--tvs~~L~~L~~~G   67 (106)
T 1r1u_A           28 RIRIMELLSVSEASVGHISHQLNL--SQS--NVSHQLKLLKSVH   67 (106)
T ss_dssp             HHHHHHHHHHCCBCHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            445666676788999999999999  655  8999999999888

>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}

Probab=89.13  E-value=0.12  Score=33.63  Aligned_cols=40  Identities=13%  Similarity=-0.045  Sum_probs=33.0

Q ss_pred             ccccccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            8 EGGKKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         8 ~lglf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      ++.|+..|.+ ++.|..|||+.+|+  ++.  .+.+.|+.|...|
T Consensus        26 ~~~il~~l~~~~~~s~~ela~~l~i--s~~--tvs~~l~~L~~~g   66 (99)
T 3cuo_A           26 RLLILCMLSGSPGTSAGELTRITGL--SAS--ATSQHLARMRDEG   66 (99)
T ss_dssp             HHHHHHHHTTCCSEEHHHHHHHHCC--CHH--HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCCcCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            4456667766 48999999999999  665  8999999999888

>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}

Probab=88.80  E-value=0.16  Score=32.16  Aligned_cols=41  Identities=17%  Similarity=0.125  Sum_probs=33.1

Q ss_pred             hccccccccCC---CCCCHHHHHHHc-----CCCCCCCcchHHHHHHHHhhCC
Q 037818            7 REGGKKVRLAN---TPLSASQILTRI-----LPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         7 ~~lglf~~L~~---g~~t~~eLA~~~-----~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      -+.-|.+.|.+   ++.|++||++.+     ++  +..  -++|.|+.|+..|
T Consensus        18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~i--s~~--TVyR~L~~L~~~G   66 (83)
T 2fu4_A           18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEI--GLA--TVYRVLNQFDDAG   66 (83)
T ss_dssp             HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCC--CHH--HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC--CHh--hHHHHHHHHHHCC
Confidence            34557777764   689999999999     78  555  8999999999887

>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}

Probab=88.66  E-value=0.1  Score=35.06  Aligned_cols=40  Identities=23%  Similarity=0.226  Sum_probs=33.7

Q ss_pred             ccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            8 EGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         8 ~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      ++.|...|.+++.|+.+||+.+|+  ++.  .+.+.|+.|...|
T Consensus        23 r~~IL~~L~~~~~~~~ela~~l~i--s~~--tv~~~l~~L~~~g   62 (114)
T 2oqg_A           23 RWEILTELGRADQSASSLATRLPV--SRQ--AIAKHLNALQACG   62 (114)
T ss_dssp             HHHHHHHHHHSCBCHHHHHHHSSS--CHH--HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            445666775689999999999999  665  8999999999998

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=88.62  E-value=0.088  Score=41.36  Aligned_cols=33  Identities=18%  Similarity=0.175  Sum_probs=26.0

Q ss_pred             CcceEEEecCCccHHHHHHHHH-------CCC-----CCeeeeccc
Q 037818          132 GVKQLVDVGGSAGDCLRMILQK-------HRF-----ICEGINFDL  165 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~-------~P~-----l~~~~v~Dl  165 (199)
                      +..+|++||.|+|.-+..+++.       +|+     ++ .+.++.
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~-~isiE~  104 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLH-FISFEK  104 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEE-EEEEES
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeE-EEEEEC
Confidence            4579999999999988776665       684     56 787875

>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}

Probab=87.59  E-value=0.1  Score=35.64  Aligned_cols=40  Identities=15%  Similarity=0.174  Sum_probs=34.5

Q ss_pred             ccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            8 EGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         8 ~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      ++.|...|.++|.|+.+||+.+|+  ++.  .+.+-|+.|...|
T Consensus        20 R~~Il~~L~~~~~~~~eLa~~l~i--s~~--tvs~hL~~L~~~G   59 (118)
T 3f6o_A           20 RRAVLGRLSRGPATVSELAKPFDM--ALP--SFMKHIHFLEDSG   59 (118)
T ss_dssp             HHHHHHHHHTCCEEHHHHHTTCCS--CHH--HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCCCHHHHHHHhCc--CHH--HHHHHHHHHHHCC
Confidence            455677777899999999999999  655  8999999999999

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=86.34  E-value=0.32  Score=39.21  Aligned_cols=54  Identities=13%  Similarity=0.083  Sum_probs=42.5

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccchHHHhcCCC---------CCCceEEeCCCCC
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDLPEVVGEAPS---------ILGVTHIGGDTFK  187 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dlp~v~~~a~~---------~~ri~~~~gd~f~  187 (199)
                      .+...||+||||-=..+..+.  +| +++ .+-+|+|.|++..++         .++..++++|+.+
T Consensus       101 ~g~~QvV~LGaGlDTra~Rl~--~~~~~~-v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d  164 (310)
T 2uyo_A          101 DGIRQFVILASGLDSRAYRLD--WPTGTT-VYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ  164 (310)
T ss_dssp             TTCCEEEEETCTTCCHHHHSC--CCTTCE-EEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS
T ss_pred             hCCCeEEEeCCCCCchhhhcc--CCCCcE-EEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHh
Confidence            345789999999988876665  35 477 899999999876542         3789999999986

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=86.24  E-value=0.3  Score=38.89  Aligned_cols=65  Identities=18%  Similarity=0.070  Sum_probs=44.4

Q ss_pred             CcceEEEecCCccHHHHHHHHHC-----CCCCeeeeccc----hH-----------------------HHhcCCC-----
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKH-----RFICEGINFDL----PE-----------------------VVGEAPS-----  174 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~-----P~l~~~~v~Dl----p~-----------------------v~~~a~~-----  174 (199)
                      ....||+||...|..+..+++..     |+-+ ++.+|.    |+                       .++.+++     
T Consensus       106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~k-I~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          106 VPGDLVETGVWRGGACILMRGILRAHDVRDRT-VWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCC-EEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCcEEEeecCchHHHHHHHHHhHhcCCCCCE-EEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            34799999999999887776654     5777 888883    22                       1122222     


Q ss_pred             ---CCCceEEeCCCCCCCCc-----ccEEEe
Q 037818          175 ---ILGVTHIGGDTFKSIPA-----ADAIFM  197 (199)
Q Consensus       175 ---~~ri~~~~gd~f~~~P~-----aD~~~l  197 (199)
                         .++|+++.||+.+.+|.     -|++++
T Consensus       185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfI  215 (282)
T 2wk1_A          185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRM  215 (282)
T ss_dssp             TCCSTTEEEEESCHHHHSTTCCCCCEEEEEE
T ss_pred             CCCcCceEEEEeCHHHHHhhCCCCCEEEEEE
Confidence               27899999999864432     277765

>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A

Probab=86.11  E-value=0.17  Score=34.85  Aligned_cols=40  Identities=20%  Similarity=0.134  Sum_probs=33.4

Q ss_pred             ccccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            8 EGGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         8 ~lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      ++.|+..|. +++.|+.+||+.+|+  ++.  .+.+.|+.|...|
T Consensus        44 rl~IL~~L~~~~~~s~~eLa~~l~i--s~s--tvs~~L~~L~~~G   84 (122)
T 1u2w_A           44 RAKITYALCQDEELCVCDIANILGV--TIA--NASHHLRTLYKQG   84 (122)
T ss_dssp             HHHHHHHHHHSSCEEHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCcCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            445677776 689999999999999  665  8999999999888

>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}

Probab=86.06  E-value=0.35  Score=30.67  Aligned_cols=30  Identities=17%  Similarity=0.145  Sum_probs=27.0

Q ss_pred             CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           18 TPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      +|.|+.|||+.+|+  ++.  .+++-|..|...|
T Consensus        23 ~~psv~EIa~~lgv--S~~--TVrr~L~~Le~kG   52 (77)
T 2jt1_A           23 APVKTRDIADAAGL--SIY--QVRLYLEQLHDVG   52 (77)
T ss_dssp             SCEEHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred             CCcCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence            78999999999999  665  7899999999888

>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}

Probab=85.70  E-value=0.53  Score=32.45  Aligned_cols=31  Identities=19%  Similarity=0.206  Sum_probs=28.2

Q ss_pred             CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           17 NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        17 ~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      +++.|..+||+++++  ++.  .++++|+.|...|
T Consensus        24 ~~~~s~~ela~~~~i--~~~--~v~~il~~L~~~G   54 (129)
T 2y75_A           24 EGPTSLKSIAQTNNL--SEH--YLEQLVSPLRNAG   54 (129)
T ss_dssp             SCCBCHHHHHHHTTS--CHH--HHHHHHHHHHHTT
T ss_pred             CCcCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            468999999999999  665  9999999999999

>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*

Probab=85.68  E-value=0.2  Score=33.56  Aligned_cols=39  Identities=10%  Similarity=-0.037  Sum_probs=31.7

Q ss_pred             hhccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHh
Q 037818            6 CREGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLT   48 (199)
Q Consensus         6 A~~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~   48 (199)
                      +.+.||+..|.+|..|..|||+.+|+  +..  .+.|+=++|-
T Consensus        45 ~~R~~l~~~L~~ge~TQREIA~~lGi--S~s--tISRi~r~L~   83 (101)
T 1jhg_A           45 GTRVRIIEELLRGEMSQRELKNELGA--GIA--TITRGSNSLK   83 (101)
T ss_dssp             HHHHHHHHHHHHCCSCHHHHHHHHCC--CHH--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcCHHHHHHHHCC--Chh--hhhHHHHHHH
Confidence            45688988888889999999999999  555  7777766664

>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69

Probab=85.38  E-value=0.46  Score=31.71  Aligned_cols=37  Identities=19%  Similarity=0.126  Sum_probs=32.0

Q ss_pred             cccccCCCCCCHHHHHHHc-CCCCCCCcchHHHHHHHHhhCC
Q 037818           11 KKVRLANTPLSASQILTRI-LPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        11 lf~~L~~g~~t~~eLA~~~-~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      |...|.+++.+..|||+.+ ++  ++.  .+.+.|+.|...|
T Consensus        19 IL~~L~~~~~~~~eLa~~l~~i--s~~--tls~~L~~Le~~G   56 (107)
T 2hzt_A           19 ILXHLTHGKKRTSELKRLMPNI--TQK--MLTQQLRELEADG   56 (107)
T ss_dssp             HHHHHTTCCBCHHHHHHHCTTS--CHH--HHHHHHHHHHHTT
T ss_pred             HHHHHHhCCCCHHHHHHHhcCC--CHH--HHHHHHHHHHHCC
Confidence            4455667899999999999 99  665  8999999999999

>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}

Probab=85.12  E-value=0.24  Score=38.81  Aligned_cols=39  Identities=10%  Similarity=0.024  Sum_probs=33.3

Q ss_pred             cccccccCC--CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            9 GGKKVRLAN--TPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         9 lglf~~L~~--g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      +.|.+.|.+  +++|+.|||+++|+  +..  .+.|+|..|+..|
T Consensus         9 l~IL~~l~~~~~~lsl~eia~~lgl--~ks--T~~RlL~tL~~~G   49 (260)
T 3r4k_A            9 LTLLTYFNHGRLEIGLSDLTRLSGM--NKA--TVYRLMSELQEAG   49 (260)
T ss_dssp             HHHHTTCBTTBSEEEHHHHHHHHCS--CHH--HHHHHHHHHHHTT
T ss_pred             HHHHHHHhhCCCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            346777764  68999999999999  555  8999999999999

>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}

Probab=85.02  E-value=0.24  Score=39.19  Aligned_cols=38  Identities=13%  Similarity=0.098  Sum_probs=31.0

Q ss_pred             ccccccCC--CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           10 GKKVRLAN--TPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        10 glf~~L~~--g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      .|.+.|.+  +++|+.|||+++|+  +..  -+.|+|..|+..|
T Consensus        34 ~IL~~l~~~~~~ltl~eia~~lgl--~ks--Tv~RlL~tL~~~G   73 (275)
T 3mq0_A           34 RILDLVAGSPRDLTAAELTRFLDL--PKS--SAHGLLAVMTELD   73 (275)
T ss_dssp             HHHHHHHHCSSCEEHHHHHHHHTC--C----CHHHHHHHHHHTT
T ss_pred             HHHHHHhhCCCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            35666653  57999999999999  655  8999999999999

>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50

Probab=83.81  E-value=0.26  Score=32.27  Aligned_cols=40  Identities=15%  Similarity=0.101  Sum_probs=32.1

Q ss_pred             ccccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            8 EGGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         8 ~lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      +..|...|. .++.|..+||+.+++  ++.  .+.+.|+.|...|
T Consensus        22 ~~~il~~l~~~~~~s~~ela~~l~i--s~~--tv~~~l~~L~~~g   62 (109)
T 1sfx_A           22 DVRIYSLLLERGGMRVSEIARELDL--SAR--FVRDRLKVLLKRG   62 (109)
T ss_dssp             HHHHHHHHHHHCCBCHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence            344555665 378999999999999  665  8999999999988

>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A

Probab=83.78  E-value=0.21  Score=32.07  Aligned_cols=40  Identities=18%  Similarity=0.176  Sum_probs=30.4

Q ss_pred             ccccccccCC-C---CCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            8 EGGKKVRLAN-T---PLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         8 ~lglf~~L~~-g---~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      +.-|.+.|.+ +   ++|+.+||+++|+  +..  .+++.|.-|...|
T Consensus        12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgv--sr~--tV~~~L~~Le~~G   55 (81)
T 1qbj_A           12 EQRILKFLEELGEGKATTAHDLSGKLGT--PKK--EINRVLYSLAKKG   55 (81)
T ss_dssp             HHHHHHHHHHHCTTCCBCHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCCCCcCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            3345566643 5   7999999999999  543  7888888888777

>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}

Probab=83.69  E-value=0.24  Score=35.62  Aligned_cols=40  Identities=15%  Similarity=0.184  Sum_probs=34.5

Q ss_pred             ccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            8 EGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         8 ~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      ++.|...|.+++.|+.+||+.+|+  +..  .+.+-|+.|...|
T Consensus        60 R~~IL~~L~~~~~t~~eLa~~lgl--s~s--tvs~hL~~L~~aG   99 (151)
T 3f6v_A           60 RRRLVQLLTSGEQTVNNLAAHFPA--SRS--AISQHLRVLTEAG   99 (151)
T ss_dssp             HHHHHHHGGGCCEEHHHHHTTSSS--CHH--HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            456777777899999999999999  655  8999999999999

>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19

Probab=83.50  E-value=0.15  Score=32.34  Aligned_cols=38  Identities=16%  Similarity=0.163  Sum_probs=28.8

Q ss_pred             ccccccCC-C---CCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           10 GKKVRLAN-T---PLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        10 glf~~L~~-g---~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      .|...|.+ +   +.|+.|||+++|+  +..  .+.+.|.-|...|
T Consensus        18 ~IL~~L~~~~~~~~~t~~eLA~~Lgv--s~~--tV~~~L~~L~~~G   59 (77)
T 1qgp_A           18 RILKFLEELGEGKATTAHDLSGKLGT--PKK--EINRVLYSLAKKG   59 (77)
T ss_dssp             HHHHHHHHHCSSSCEEHHHHHHHHCC--CHH--HHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCCCcCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            45555543 4   7999999999999  544  7888888887666

>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}

Probab=83.24  E-value=0.22  Score=33.76  Aligned_cols=40  Identities=23%  Similarity=0.276  Sum_probs=32.9

Q ss_pred             ccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            8 EGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         8 ~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      ++.++..|.+++.|+.+||+.+++  ++.  .+.+.|+.|...|
T Consensus        34 ~~~il~~L~~~~~s~~ela~~l~i--s~s--tvsr~l~~Le~~G   73 (119)
T 2lkp_A           34 RLMILTQLRNGPLPVTDLAEAIGM--EQS--AVSHQLRVLRNLG   73 (119)
T ss_dssp             HHHHHHHHHHCCCCHHHHHHHHSS--CHH--HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            445666676678999999999999  665  8999999998888

>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}

Probab=82.70  E-value=0.39  Score=34.06  Aligned_cols=43  Identities=14%  Similarity=0.145  Sum_probs=35.0

Q ss_pred             chhccccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            5 ECREGGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         5 ~A~~lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      ...+..|...|. +++.|..+||+++|+  ++.  .+.+.++.|...|
T Consensus         8 d~~d~~il~~L~~~~~~s~~ela~~lg~--s~~--tv~~~l~~L~~~G   51 (151)
T 2dbb_A            8 DRVDMQLVKILSENSRLTYRELADILNT--TRQ--RIARRIDKLKKLG   51 (151)
T ss_dssp             CHHHHHHHHHHHHCTTCCHHHHHHHTTS--CHH--HHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHcCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            345566777775 588999999999999  665  8899999998888

>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A

Probab=82.57  E-value=0.57  Score=35.01  Aligned_cols=40  Identities=15%  Similarity=0.090  Sum_probs=34.4

Q ss_pred             ccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            8 EGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         8 ~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      +..|...|.+++.|..+||+.+|+  ++.  .+.+-++.|...|
T Consensus        22 ~~~IL~~L~~~~~s~~eLA~~lgl--S~s--tv~~~l~~Le~~G   61 (192)
T 1uly_A           22 RRKILKLLRNKEMTISQLSEILGK--TPQ--TIYHHIEKLKEAG   61 (192)
T ss_dssp             HHHHHHHHTTCCBCHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            445667777899999999999999  665  8999999999998

>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*

Probab=82.56  E-value=0.58  Score=33.02  Aligned_cols=41  Identities=20%  Similarity=0.077  Sum_probs=34.1

Q ss_pred             hccccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            7 REGGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         7 ~~lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      .+..|...|. +++.|..+||+++|+  ++.  .+.+.++.|...|
T Consensus         4 ~~~~il~~L~~~~~~~~~ela~~lg~--s~~--tv~~~l~~L~~~G   45 (150)
T 2pn6_A            4 IDLRILKILQYNAKYSLDEIAREIRI--PKA--TLSYRIKKLEKDG   45 (150)
T ss_dssp             HHHHHHHHHTTCTTSCHHHHHHHHTS--CHH--HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            3455677776 478999999999999  665  8999999999888

>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}

Probab=82.21  E-value=0.87  Score=32.96  Aligned_cols=31  Identities=19%  Similarity=0.269  Sum_probs=28.3

Q ss_pred             CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           17 NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        17 ~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      +++.|+++||+++++  ++.  .++++|..|...|
T Consensus        42 ~~~~s~~eIA~~~~i--~~~--~l~kil~~L~~aG   72 (159)
T 3lwf_A           42 DGPISLRSIAQDKNL--SEH--YLEQLIGPLRNAG   72 (159)
T ss_dssp             SCCBCHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred             CCCcCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            368999999999999  766  9999999999999

>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}

Probab=82.21  E-value=0.62  Score=36.33  Aligned_cols=39  Identities=5%  Similarity=-0.015  Sum_probs=32.8

Q ss_pred             cccccccC--CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            9 GGKKVRLA--NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         9 lglf~~L~--~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      +.|.+.|.  +++.|+.|||+++|+  +..  .+.|+|..|...|
T Consensus        26 l~iL~~l~~~~~~~~~~eia~~~gl--~ks--tv~r~l~tL~~~G   66 (260)
T 2o0y_A           26 IDLLELFDAAHPTRSLKELVEGTKL--PKT--TVVRLVATMCARS   66 (260)
T ss_dssp             HHHHTTCBTTBSSBCHHHHHHHHCC--CHH--HHHHHHHHHHHTT
T ss_pred             HHHHHHHhhCCCCcCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            34667775  368999999999999  554  8999999999999

>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A

Probab=81.64  E-value=0.67  Score=32.06  Aligned_cols=40  Identities=10%  Similarity=0.078  Sum_probs=33.0

Q ss_pred             ccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            8 EGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         8 ~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      ++.++..|..++.|..+||+.+++  ++.  .+.++++.|...|
T Consensus        39 ~~~iL~~l~~~~~~~~ela~~l~~--s~~--tvs~~l~~Le~~g   78 (146)
T 2gxg_A           39 DFLVLRATSDGPKTMAYLANRYFV--TQS--AITASVDKLEEMG   78 (146)
T ss_dssp             HHHHHHHHTTSCBCHHHHHHHTTC--CHH--HHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcCCcCHHHHHHHhCC--Cch--hHHHHHHHHHHCC
Confidence            334455555778999999999999  665  8999999999999

>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B

Probab=81.59  E-value=0.31  Score=30.75  Aligned_cols=47  Identities=11%  Similarity=0.137  Sum_probs=34.8

Q ss_pred             CcchhccccccccC-CCCCCHHHHHHHcCCCC--CCCcchHHHHHHHHhhCC
Q 037818            3 DNECREGGKKVRLA-NTPLSASQILTRILPSG--DGDAENLQRILRLLTSYG   51 (199)
Q Consensus         3 ~~~A~~lglf~~L~-~g~~t~~eLA~~~~~~~--~~~~~~l~rlL~~l~~~g   51 (199)
                      +.+..+..|...|. .++.|+.||++.++.+.  ++.  .+.++|+-|...|
T Consensus         6 ~lt~~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~--Tv~~~l~rL~~kG   55 (82)
T 1p6r_A            6 QISDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPK--TIQTMLLRLIKKG   55 (82)
T ss_dssp             CCCHHHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHH--HHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHH--HHHHHHHHHHHCC
Confidence            34555666777775 48899999999997300  333  7899999999888

>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19

Probab=81.35  E-value=0.39  Score=30.65  Aligned_cols=38  Identities=16%  Similarity=0.031  Sum_probs=29.5

Q ss_pred             cccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           11 KKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        11 lf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      |.+.|. .||.|+.+||+.+|+  ++. ..+++-|..|...|
T Consensus        16 IL~~Lk~~g~~ta~eiA~~Lgi--t~~-~aVr~hL~~Le~eG   54 (79)
T 1xmk_A           16 ICDYLFNVSDSSALNLAKNIGL--TKA-RDINAVLIDMERQG   54 (79)
T ss_dssp             HHHHHHHTCCEEHHHHHHHHCG--GGH-HHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCcCHHHHHHHcCC--CcH-HHHHHHHHHHHHCC
Confidence            445565 489999999999999  432 16888898888777

>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19

Probab=81.20  E-value=1.4  Score=27.74  Aligned_cols=38  Identities=13%  Similarity=0.156  Sum_probs=29.9

Q ss_pred             ccccccCCCC-CCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           10 GKKVRLANTP-LSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        10 glf~~L~~g~-~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      ..++.|.++. .|+.+||+++|+  +  +..+.|+|--|...|
T Consensus        19 ~~i~~L~~~~~~Ta~~IAkkLg~--s--K~~vNr~LY~L~kkG   57 (75)
T 1sfu_A           19 KEVLSLNTNDYTTAISLSNRLKI--N--KKKINQQLYKLQKED   57 (75)
T ss_dssp             HHHHTSCTTCEECHHHHHHHTTC--C--HHHHHHHHHHHHHTT
T ss_pred             HHHHhCCCCcchHHHHHHHHHCC--C--HHHHHHHHHHHHHCC
Confidence            3466777755 999999999999  3  337889888888777

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=81.14  E-value=1.7  Score=36.23  Aligned_cols=40  Identities=15%  Similarity=0.129  Sum_probs=31.5

Q ss_pred             CCcceEEEecCCccHHHHHHH-HHCCC-CCeeeeccc-hHHHhc
Q 037818          131 KGVKQLVDVGGSAGDCLRMIL-QKHRF-ICEGINFDL-PEVVGE  171 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~-~~~P~-l~~~~v~Dl-p~v~~~  171 (199)
                      .....++|||++.|.++..++ +..+. .+ ++.|+- |...+.
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~-V~afEP~p~~~~~  267 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFER-VWMIEPDRINLQT  267 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSE-EEEECCCHHHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCE-EEEEcCCHHHHHH
Confidence            566899999999999999988 67876 56 888884 544433

>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}

Probab=80.99  E-value=0.73  Score=31.89  Aligned_cols=41  Identities=15%  Similarity=0.229  Sum_probs=33.9

Q ss_pred             hccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            7 REGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         7 ~~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      .+..+...|..++.|..+||+.+++  ++.  .+.++++.|...|
T Consensus        39 ~~~~iL~~l~~~~~t~~eLa~~l~~--s~~--tvs~~l~~L~~~G   79 (146)
T 3tgn_A           39 TQEHILMLLSEESLTNSELARRLNV--SQA--AVTKAIKSLVKEG   79 (146)
T ss_dssp             HHHHHHHHHTTCCCCHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence            3455666777655999999999999  665  8999999999999

>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A

Probab=80.96  E-value=0.6  Score=33.02  Aligned_cols=42  Identities=24%  Similarity=0.094  Sum_probs=34.9

Q ss_pred             hhccccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            6 CREGGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         6 A~~lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      ..+..|...|. +++.|..+||+++|+  ++.  .+.+.++.|...|
T Consensus         7 ~~~~~iL~~L~~~~~~s~~ela~~lg~--s~~--tv~~~l~~L~~~G   49 (150)
T 2w25_A            7 DIDRILVRELAADGRATLSELATRAGL--SVS--AVQSRVRRLESRG   49 (150)
T ss_dssp             HHHHHHHHHHHHCTTCCHHHHHHHHTS--CHH--HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            34556667775 589999999999999  665  8999999999999

>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}

Probab=80.89  E-value=0.69  Score=35.98  Aligned_cols=39  Identities=15%  Similarity=0.112  Sum_probs=33.0

Q ss_pred             cccccccCC--CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            9 GGKKVRLAN--TPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         9 lglf~~L~~--g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      +.|.+.|.+  ++.|+.|||+++|+  +..  .+.|+|..|+..|
T Consensus        17 l~iL~~l~~~~~~~~~~eia~~~gl--~~s--tv~r~l~~L~~~G   57 (257)
T 2g7u_A           17 FAVLLAFDAQRPNPTLAELATEAGL--SRP--AVRRILLTLQKLG   57 (257)
T ss_dssp             HHHHHTCSSSCSSCBHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            446777763  68999999999999  555  8999999999999

>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50

Probab=80.86  E-value=0.73  Score=30.07  Aligned_cols=31  Identities=13%  Similarity=0.307  Sum_probs=27.7

Q ss_pred             CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           17 NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        17 ~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      +++.|..|||+.+|+  +..  .+.+.|+.|...|
T Consensus        34 ~~~~t~~ela~~l~i--s~~--tv~~~l~~L~~~g   64 (109)
T 2d1h_A           34 EKPITSEELADIFKL--SKT--TVENSLKKLIELG   64 (109)
T ss_dssp             CSCEEHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            578999999999999  655  8999999999888

>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}

Probab=80.42  E-value=0.78  Score=33.03  Aligned_cols=41  Identities=10%  Similarity=0.091  Sum_probs=33.8

Q ss_pred             hccccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            7 REGGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         7 ~~lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      ++..|...|. ++++|..+||+++|+  ++.  .+.+-++-|...|
T Consensus         4 ~d~~il~~L~~~~~~s~~~la~~lg~--s~~--tv~~rl~~L~~~g   45 (162)
T 3i4p_A            4 LDRKILRILQEDSTLAVADLAKKVGL--STT--PCWRRIQKMEEDG   45 (162)
T ss_dssp             HHHHHHHHHTTCSCSCHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            3455677776 589999999999999  666  8888899888888

>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0

Probab=80.21  E-value=0.75  Score=30.96  Aligned_cols=37  Identities=22%  Similarity=0.121  Sum_probs=31.6

Q ss_pred             cccccCCCCCC--HHHHHHHc-CCCCCCCcchHHHHHHHHhhCC
Q 037818           11 KKVRLANTPLS--ASQILTRI-LPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        11 lf~~L~~g~~t--~~eLA~~~-~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      |...|.+|+.+  +.||++.+ |+  ++.  .+.+.|+.|...|
T Consensus        32 IL~~L~~g~~~~~~~eL~~~l~gi--s~~--~ls~~L~~Le~~G   71 (111)
T 3df8_A           32 IISVLGNGSTRQNFNDIRSSIPGI--SST--ILSRRIKDLIDSG   71 (111)
T ss_dssp             HHHHHTSSSSCBCHHHHHHTSTTC--CHH--HHHHHHHHHHHTT
T ss_pred             HHHHHhcCCCCCCHHHHHHHccCC--CHH--HHHHHHHHHHHCC
Confidence            45566678888  99999999 99  665  8999999999999

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	199
d1fp1d2	244	c.66.1.12 (D:129-372) Chalcone O-methyltransferase	3e-33
d1fp2a2	244	c.66.1.12 (A:109-352) Isoflavone O-methyltransfera	4e-33
d1kyza2	243	c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli	2e-31
d1qzza2	256	c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase	1e-11
d1tw3a2	253	c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf	2e-11
d1kyza1	107	a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic	4e-04

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  117 bits (293), Expect = 3e-33
 Identities = 58/144 (40%), Positives = 83/144 (57%), Gaps = 1/144 (0%)

Query: 56  APYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGV 115
           A +       AL+  W    EAV+D  I+ F  VHG   Y + GK  +MN +  K+M  V
Sbjct: 5   ASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDV 64

Query: 116 SVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSI 175
               +  +L+ Y GF+G+  LVDVGG +G  L +I+ K+  I  GINFDLP+V+  AP +
Sbjct: 65  CATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIK-GINFDLPQVIENAPPL 123

Query: 176 LGVTHIGGDTFKSIPAADAIFMKW 199
            G+ H+GGD F S+P  DA+ +K 
Sbjct: 124 SGIEHVGGDMFASVPQGDAMILKA 147

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  116 bits (292), Expect = 4e-33
 Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 1/147 (0%)

Query: 53  LSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAM 112
           L  AP +       L  ++  + + + +  +  F    G   + +  K PE N     AM
Sbjct: 1   LCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAM 60

Query: 113 SGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEA 172
           +  S     ++ D    F G++ +VDVGG  G   ++I +    +   I FD P+VV   
Sbjct: 61  ASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLK-CIVFDRPQVVENL 119

Query: 173 PSILGVTHIGGDTFKSIPAADAIFMKW 199
                +T++GGD F SIP ADA+ +K+
Sbjct: 120 SGSNNLTYVGGDMFTSIPNADAVLLKY 146

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  112 bits (281), Expect = 2e-31
 Identities = 68/148 (45%), Positives = 91/148 (61%), Gaps = 2/148 (1%)

Query: 52  GLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKA 111
           G+S +   L +    LM +W  + +AVLD  I PF K +G  A+ Y+G  P  N +  K 
Sbjct: 2   GVSISALNLMNQDKVLMESWYHLKDAVLDGGI-PFNKAYGMTAFEYHGTDPRFNKVFNKG 60

Query: 112 MSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGE 171
           MS  S   +  +L+ Y GF+G+K LVDVGG  G  +  I+ K+  I +GINFDLP V+ +
Sbjct: 61  MSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTI-KGINFDLPHVIED 119

Query: 172 APSILGVTHIGGDTFKSIPAADAIFMKW 199
           APS  GV H+GGD F SIP ADA+FMKW
Sbjct: 120 APSYPGVEHVGGDMFVSIPKADAVFMKW 147

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

 Score = 59.6 bits (143), Expect = 1e-11
 Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 3/114 (2%)

Query: 60  LQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPF 119
           L         A+  + + V       +   +G P +        +       MS      
Sbjct: 11  LNGAVSHADLAFTGLLDVVRTGRP-AYAGRYGRPFWEDLSADVALADSFDALMSCDEDLA 69

Query: 120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAP 173
             +  D Y+ +  V+ ++DVGG  G  L  I  +   +  G   +L      A 
Sbjct: 70  YEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHL-RGTLVELAGPAERAR 121

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

 Score = 59.3 bits (142), Expect = 2e-11
 Identities = 17/107 (15%), Positives = 41/107 (38%), Gaps = 3/107 (2%)

Query: 70  AWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNG 129
           ++  + +A+       +  ++G+P Y      P++       ++        +    Y+ 
Sbjct: 20  SFTRLPDAIRTGRP-TYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD- 77

Query: 130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSIL 176
           +  V+ ++DVGG  G     I ++   +      ++   V  A S L
Sbjct: 78  WTNVRHVLDVGGGKGGFAAAIARRAPHVS-ATVLEMAGTVDTARSYL 123

>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 107

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 36.3 bits (84), Expect = 4e-04
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 17 NTPLSASQILTRILPSGDGDAENLQRILRLLTSYGGLS 54
             +S  +I +++  +       L R+LRLL  Y  L+
Sbjct: 42 GAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILT 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	199
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	100.0
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	100.0
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	100.0
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.95
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.94
d1tw3a1	85	Carminomycin 4-O-methyltransferase {Streptomyces p	98.88
d1qzza1	92	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.85
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	98.83
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	98.73
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	98.61
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	98.54
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	98.54
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	98.52
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.51
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	98.49
d1fp2a1	101	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.47
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.38
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	98.36
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	98.34
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	98.33
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	98.29
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.28
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	98.24
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	98.23
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.23
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.22
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.2
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.18
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	98.17
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	98.16
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	98.16
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	98.08
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	98.02
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	98.01
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	98.0
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	97.99
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	97.95
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	97.9
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	97.88
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	97.86
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	97.86
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	97.84
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	97.84
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	97.84
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	97.84
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	97.83
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	97.83
d1kyza1	107	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	97.82
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	97.79
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	97.77
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	97.76
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	97.75
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	97.7
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	97.68
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	97.68
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	97.67
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	97.66
d1fp1d1	110	Chalcone O-methyltransferase {Alfalfa (Medicago sa	97.66
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	97.57
d2h00a1	250	Methyltransferase 10 domain containing protein MET	97.49
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	97.47
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	97.43
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	97.38
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	97.34
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	97.33
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	97.31
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	97.17
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	97.14
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	97.11
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	96.94
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	96.89
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	96.85
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	96.84
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	96.6
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	96.52
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	96.44
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	96.3
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	96.23
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	96.14
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	96.06
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	96.01
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	95.87
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	95.85
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	95.77
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	95.41
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	95.37
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	95.34
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	95.3
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	95.01
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	94.98
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	94.83
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	94.79
d1mkma1	75	Transcriptional regulator IclR, N-terminal domain	94.25
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	93.98
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	93.42
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	93.3
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	92.74
d2hoea1	62	N-acetylglucosamine kinase {Thermotoga maritima [T	92.62
d1z05a1	71	Transcriptional regulator VC2007 N-terminal domain	91.92
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	91.07
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	90.65
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	90.37
d1biaa1	63	Biotin repressor, N-terminal domain {Escherichia c	90.12
d1ulya_	190	Hypothetical protein PH1932 {Pyrococcus horikoshii	89.74
d1z6ra1	70	Mlc protein N-terminal domain {Escherichia coli [T	89.63
d1lvaa3	64	C-terminal fragment of elongation factor SelB {Moo	88.2
d1xd7a_	127	Hypothetical protein ywnA {Bacillus subtilis [TaxI	87.71
d1sfxa_	109	Hypothetical protein AF2008 {Archaeoglobus fulgidu	87.4
d1r1ta_	98	SmtB repressor {Cyanobacteria (Synechococcus), pcc	87.32
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	86.41
d1ku9a_	151	DNA-binding protein Mj223 {Archaeon Methanococcus	84.64
d2d1ha1	109	Hypothetical transcriptional regulator ST1889 {Sul	84.52
d1r1ua_	94	Metal-sensing transcriptional repressor CzrA {Stap	83.41
d1ylfa1	138	Hypothetical protein BC1842 {Bacillus cereus [TaxI	82.88
d2cyya1	60	Putative transcriptional regulator PH1519 {Archaeo	81.75
d1ub9a_	100	Hypothetical protein PH1061 {Archaeon Pyrococcus h	81.43
d2cfxa1	63	Transcriptional regulator LrpC {Bacillus subtilis	80.69
d1i1ga1	60	LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}	80.38
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	80.22
d2p4wa1	194	Transcriptional regulatory protein PF1790 {Pyrococ	80.21

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=9.6e-35  Score=229.40  Aligned_cols=146  Identities=40%  Similarity=0.701  Sum_probs=125.6

Q ss_pred             CChHHHHHHhcChhhHhhhhhHHHHhhCCCCChhhhhhCCCcccccccCchhHHHHHHHHhccchhhHHHHhhhCCCCCC
Q 037818           53 LSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKG  132 (199)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~  132 (199)
                      .++++++.++++|.++++|.+|.+++++|+.++|+.++|.++|||+.+||+..+.|+++|...+...++.+++.|+.|++
T Consensus         2 g~l~~~~~~~~~p~~~~~w~~l~~~v~~g~~~~f~~~~G~~~~e~l~~~p~~~~~F~~aM~~~s~~~~~~l~~~~~~f~~   81 (244)
T d1fp1d2           2 GYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEG   81 (244)
T ss_dssp             CCCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTT
T ss_pred             ccHHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHhHHhcCCCHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Confidence            46788999999999999999999999998878899999999999999999999999999999999888999999987899


Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCCCCceEEeCCCCCCCCcccEEEecC
Q 037818          133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW  199 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~~ri~~~~gd~f~~~P~aD~~~l~~  199 (199)
                      ..+|||||||+|.++.+++++||+++ +|++|+|+|++.+...+||++++||||+++|.+|+|+|++
T Consensus        82 ~~~vlDiGGG~G~~~~~l~~~~P~l~-~~v~Dlp~vi~~~~~~~ri~~~~gd~~~~~p~~D~~~l~~  147 (244)
T d1fp1d2          82 ISTLVDVGGGSGRNLELIISKYPLIK-GINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKA  147 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCE-EEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEES
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCe-EEEecchhhhhccCCCCCeEEecCCcccccccceEEEEeh
Confidence            99999999999999999999999999 9999999999999999999999999999999999999975

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=2.3e-34  Score=227.27  Aligned_cols=146  Identities=46%  Similarity=0.794  Sum_probs=137.5

Q ss_pred             CCChHHHHHHhcChhhHhhhhhHHHHhhCCCCChhhhhhCCCcccccccCchhHHHHHHHHhccchhhHHHHhhhCCCCC
Q 037818           52 GLSYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFK  131 (199)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~  131 (199)
                      +.|+++++.+.+++.+|+.|.+|+++||+|+ ++|+.++|.++|+|+.++|+..+.|+++|+..+...++.++..++.++
T Consensus         2 ~~s~~~~~~~~~~~~~~~~W~~L~~avrtG~-~~f~~~~G~~~~~~~~~~p~~~~~F~~aM~~~~~~~~~~~~~~~~~~~   80 (243)
T d1kyza2           2 GVSISALNLMNQDKVLMESWYHLKDAVLDGG-IPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFE   80 (243)
T ss_dssp             SCCTHHHHHHHTSHHHHGGGGGHHHHHHHCS-CHHHHHHSSCHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             CCcHHHHHHHhcCHHHHHHHHHHHHHHhhCC-CHHHhhcCCCHHHHHHhCHHHHHHHHHHHhHhhhhHHHHHHHhccccc
Confidence            3578999999889999999999999999999 899999999999999999999999999999998888889999998346


Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCCCCceEEeCCCCCCCCcccEEEecC
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW  199 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~~ri~~~~gd~f~~~P~aD~~~l~~  199 (199)
                      +.++|||||||+|.++++++++||+++ +|++|+|+|++.++..+|+++++||||+++|.+|+|++++
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~-~~v~Dlp~vi~~~~~~~r~~~~~~d~~~~~P~ad~~~l~~  147 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYPTIK-GINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKW  147 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCTTSE-EEEEECTTTTTTCCCCTTEEEEECCTTTCCCCCSCEECSS
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCe-EEEcccHHhhhhcccCCceEEecccccccCCCcceEEEEE
Confidence            789999999999999999999999999 9999999999999999999999999999999999999875

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=3e-33  Score=220.80  Aligned_cols=144  Identities=28%  Similarity=0.446  Sum_probs=133.8

Q ss_pred             ChHHHHHHhcChhhHhhhhhHHHHhhCCCCChhhhhhCCCcccccccCchhHHHHHHHHhccchhhHHHHhhh-CCCCCC
Q 037818           54 SYAPYMLQHHQDALMSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDG-YNGFKG  132 (199)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~-~~~~~~  132 (199)
                      |++++++.+.++.++.+|..|++++|+|..++|+.++|.++|+|+.++|+..+.|+++|+..+......+.+. ++ |++
T Consensus         2 s~ap~~~~~~~p~~~~~w~~l~~~~~~~~~~~f~~a~G~~~~e~l~~~pe~~~~F~~aM~~~s~~~~~~~~~~~~~-~~~   80 (244)
T d1fp2a2           2 CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFV-FDG   80 (244)
T ss_dssp             CCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHTCHHH-HTT
T ss_pred             ChHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHhhhhhhhhhhhHhhhccc-ccC
Confidence            6789999999999999999999999998768999999999999999999999999999999888776666553 45 899


Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCCCCceEEeCCCCCCCCcccEEEecC
Q 037818          133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPAADAIFMKW  199 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~~ri~~~~gd~f~~~P~aD~~~l~~  199 (199)
                      .++|||||||+|.++.+++++||+++ +|++|+|+|++.+...+||++++||||+++|.+|+|++++
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~~P~l~-~~v~Dlp~vi~~~~~~~rv~~~~gD~f~~~p~aD~~~l~~  146 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICETFPKLK-CIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKY  146 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCE-EEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEES
T ss_pred             ceEEEEecCCccHHHHHHHHhCCCCe-EEEecCHHHHHhCcccCceEEEecCcccCCCCCcEEEEEe
Confidence            99999999999999999999999999 9999999999999999999999999999999899999975

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.95  E-value=2.7e-29  Score=199.38  Aligned_cols=145  Identities=19%  Similarity=0.257  Sum_probs=129.1

Q ss_pred             CCChHHHHHHhcChhhH-hhhhhHHHHhhCCCCChhhhhhCCCcccccccCchhHHHHHHHHhccchhhHHHHhhhCCCC
Q 037818           52 GLSYAPYMLQHHQDALM-SAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGF  130 (199)
Q Consensus        52 ~~~~~~~~~~~~~~~~~-~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~  130 (199)
                      |.++++++.+....... .+|.+|.+++|+|. ++|...+|.++|+|+.++|+..+.|+++|...+...++.+++.+| |
T Consensus         2 p~~~~~~~~l~~~~~~~~~~~~~L~~~~rtG~-~~~~~~~G~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~d-~   79 (256)
T d1qzza2           2 PAQQRAWLDLNGAVSHADLAFTGLLDVVRTGR-PAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-W   79 (256)
T ss_dssp             TTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSC-CSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC-C
T ss_pred             cHHHHHHHhhcCchhhhHhhHHHHHHHHHhCC-chhhhhhCCCHHHHHHhCHHHHHHHHHHHHhhHHHHHHHHHhcCC-C
Confidence            34677777654333332 47999999999999 899999999999999999999999999999999988999999999 9


Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCC-------CCCceEEeCCCCCCCCc-ccEEEecC
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPS-------ILGVTHIGGDTFKSIPA-ADAIFMKW  199 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~-------~~ri~~~~gd~f~~~P~-aD~~~l~~  199 (199)
                      ++.++|||||||+|.++.+++++||+++ ++++|+|++++.+++       .+||+++++|+|+++|. +|+|++++
T Consensus        80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~-~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~  155 (256)
T d1qzza2          80 SAVRHVLDVGGGNGGMLAAIALRAPHLR-GTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSF  155 (256)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCE-EEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEES
T ss_pred             ccCCEEEEECCCCCHHHHHHHHhhcCcE-EEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhccc
Confidence            9999999999999999999999999999 999999999988764       38999999999999887 49999875

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.94  E-value=3.1e-27  Score=187.00  Aligned_cols=129  Identities=19%  Similarity=0.366  Sum_probs=120.0

Q ss_pred             HhhhhhHHHHhhCCCCChhhhhhCCCcccccccCchhHHHHHHHHhccchhhHHHHhhhCCCCCCcceEEEecCCccHHH
Q 037818           68 MSAWPLVHEAVLDPTIEPFVKVHGEPAYSYYGKMPEMNGLMRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCL  147 (199)
Q Consensus        68 ~~~~~~L~~~lr~g~~~~~~~~~g~~~~e~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~  147 (199)
                      ..+|.+|+++||+|+ ++|..++|.++|+|+.++|+..+.|+.+|+..+...++.+++.+| |++.++|||||||+|.++
T Consensus        18 ~~~~~~L~~~vr~G~-~~~~~~~G~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~d-~~~~~~VLDvGcG~G~~~   95 (253)
T d1tw3a2          18 DISFTRLPDAIRTGR-PTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFA   95 (253)
T ss_dssp             GGGGGGHHHHHHHCC-CCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHH
T ss_pred             cccHHHHHHHHHhCC-chhhhccCCCHHHHHhhCHHHHHHHHHHHHHhHHHHHHHHHhhcC-CccCCEEEEeCCCCCHHH
Confidence            357999999999999 899999999999999999999999999999999988899999999 999999999999999999


Q ss_pred             HHHHHHCCCCCeeeeccchHHHhcCCC-------CCCceEEeCCCCCCCCc-ccEEEecC
Q 037818          148 RMILQKHRFICEGINFDLPEVVGEAPS-------ILGVTHIGGDTFKSIPA-ADAIFMKW  199 (199)
Q Consensus       148 ~~l~~~~P~l~~~~v~Dlp~v~~~a~~-------~~ri~~~~gd~f~~~P~-aD~~~l~~  199 (199)
                      ..+++++|+++ ++++|+|++++.+++       .+||+++.+|+|+++|. +|+|++++
T Consensus        96 ~~la~~~p~~~-~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~~  154 (253)
T d1tw3a2          96 AAIARRAPHVS-ATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSF  154 (253)
T ss_dssp             HHHHHHCTTCE-EEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEES
T ss_pred             HHHHHhcceeE-EEEccCHHHHHHHHHHHHHhhcccchhhccccchhhcccchhheeecc
Confidence            99999999999 999999999988874       27999999999998877 59999874

>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.88  E-value=1.5e-10  Score=75.25  Aligned_cols=44  Identities=14%  Similarity=0.136  Sum_probs=42.0

Q ss_pred             cchhccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            4 NECREGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         4 ~~A~~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      ++|+++||||.|.+||+|++|||+++|+  +++  .+.|+||+|+++|
T Consensus        19 ~~av~L~ifd~l~~gp~s~~eLA~~~g~--~~~--~l~rlLr~l~a~g   62 (85)
T d1tw3a1          19 RTAATLRLVDHILAGARTVKALAARTDT--RPE--ALLRLIRHLVAIG   62 (85)
T ss_dssp             HHHHHTTHHHHHHTTCCBHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred             HHHHHcCcHHHhccCCCCHHHHHHHhCc--Chh--HHHHHHHHHHHCC
Confidence            5789999999999999999999999999  777  9999999999999

>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.85  E-value=2.4e-10  Score=75.35  Aligned_cols=44  Identities=18%  Similarity=0.103  Sum_probs=42.1

Q ss_pred             cchhccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            4 NECREGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         4 ~~A~~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      ++|+++|||+.|.+||+|++|||+++|+  +++  .+.|+||+|+++|
T Consensus        25 ~~aveL~ifd~L~~gp~t~~eLA~~~g~--~~~--~l~rLlr~L~a~g   68 (92)
T d1qzza1          25 RVAATLRLVDHLLAGADTLAGLADRTDT--HPQ--ALSRLVRHLTVVG   68 (92)
T ss_dssp             HHHHHTTHHHHHHTTCCSHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred             HHHHHcCchHHHhCCCCCHHHHHHHHCc--Cch--HHHHHHHHHHHCC
Confidence            5799999999999999999999999999  777  9999999999999

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=98.83  E-value=1.7e-09  Score=85.03  Aligned_cols=79  Identities=13%  Similarity=0.105  Sum_probs=62.7

Q ss_pred             hhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC-
Q 037818          117 VPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK-  187 (199)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~-  187 (199)
                      ......+....+ ++...+|||||||+|.++..+++++ ..+ ++.+|+ |..++.+++.       +||+++.+|+.+ 
T Consensus        53 ~~~~~~l~~~~~-l~~~~~vLDiGcG~G~~~~~la~~~-~~~-v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l  129 (282)
T d2o57a1          53 EWLASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKF-GVS-IDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEI  129 (282)
T ss_dssp             HHHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHH-CCE-EEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSC
T ss_pred             HHHHHHHHHhcC-CCCCCEEEEeCCCCcHHHhhhhccC-CcE-EEEEeccchhhhhhhcccccccccccccccccccccc
Confidence            333445556666 7888999999999999999999876 578 999997 7777777652       799999999987 


Q ss_pred             CCCcc--cEEEec
Q 037818          188 SIPAA--DAIFMK  198 (199)
Q Consensus       188 ~~P~a--D~~~l~  198 (199)
                      ++|.+  |+|+..
T Consensus       130 ~~~~~sfD~V~~~  142 (282)
T d2o57a1         130 PCEDNSYDFIWSQ  142 (282)
T ss_dssp             SSCTTCEEEEEEE
T ss_pred             cccccccchhhcc
Confidence            67763  998764

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=1e-08  Score=78.75  Aligned_cols=75  Identities=19%  Similarity=0.241  Sum_probs=60.6

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-------CCCceEEeCCCCCCCCc-
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-------ILGVTHIGGDTFKSIPA-  191 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-------~~ri~~~~gd~f~~~P~-  191 (199)
                      ..+.+.+. +....+|||||||+|.++..++++++ .+ ++.+|+ |..++.+++       .+||+|+.+|+.+..|. 
T Consensus        23 ~~l~~~~~-l~pg~~VLDiGCG~G~~~~~la~~~~-~~-v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~   99 (245)
T d1nkva_          23 ATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDHG-IT-GTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE   99 (245)
T ss_dssp             HHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHTC-CE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred             HHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHhcC-CE-EEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccC
Confidence            45667776 77778999999999999999998876 78 999998 677776654       27899999999885555 


Q ss_pred             -ccEEEec
Q 037818          192 -ADAIFMK  198 (199)
Q Consensus       192 -aD~~~l~  198 (199)
                       .|+++..
T Consensus       100 ~fD~v~~~  107 (245)
T d1nkva_         100 KCDVAACV  107 (245)
T ss_dssp             CEEEEEEE
T ss_pred             ceeEEEEE
Confidence             3988753

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=98.61  E-value=1.9e-08  Score=76.06  Aligned_cols=73  Identities=16%  Similarity=0.257  Sum_probs=57.5

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC------CCCceEEeCCCCC-CCCcc-
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS------ILGVTHIGGDTFK-SIPAA-  192 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~------~~ri~~~~gd~f~-~~P~a-  192 (199)
                      .+++..+ ..+..+|||||||+|.++..+++..+  + ++.+|+ |..++.|++      .++++++.+|+.+ ++|.+ 
T Consensus         6 ~ll~~~~-l~~~~rVLDiGcG~G~~~~~l~~~~~--~-v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~   81 (231)
T d1vl5a_           6 KLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--K-VVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDER   81 (231)
T ss_dssp             HHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--E-EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTC
T ss_pred             HHHHhcC-CCCcCEEEEecccCcHHHHHHHHhCC--E-EEEEECCHHHHhhhhhcccccccccccccccccccccccccc
Confidence            4556565 77788999999999999999998875  5 778897 677777653      3899999999987 67663 


Q ss_pred             -cEEEec
Q 037818          193 -DAIFMK  198 (199)
Q Consensus       193 -D~~~l~  198 (199)
                       |+|++.
T Consensus        82 fD~v~~~   88 (231)
T d1vl5a_          82 FHIVTCR   88 (231)
T ss_dssp             EEEEEEE
T ss_pred             ccccccc
Confidence             999865

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=98.54  E-value=4.3e-08  Score=76.75  Aligned_cols=67  Identities=16%  Similarity=0.184  Sum_probs=58.5

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCc--ccEEEec
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPA--ADAIFMK  198 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~--aD~~~l~  198 (199)
                      .+..+|+|+|||+|..+..+++.+|+.+ ++..|. |..++.|+++      +||+++.+|+|+++|.  .|+++-+
T Consensus       107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~-v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIvsN  182 (274)
T d2b3ta1         107 EQPCRILDLGTGTGAIALALASERPDCE-IIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSN  182 (274)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSE-EEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEEC
T ss_pred             ccccceeeeehhhhHHHHHHHhhCCcce-eeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEEEec
Confidence            4456899999999999999999999999 999998 8888888864      6899999999998876  3988753

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=98.54  E-value=2.9e-08  Score=75.56  Aligned_cols=73  Identities=21%  Similarity=0.259  Sum_probs=59.5

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC------CCCceEEeCCCCC-CCCcc-
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS------ILGVTHIGGDTFK-SIPAA-  192 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~------~~ri~~~~gd~f~-~~P~a-  192 (199)
                      -+++..+ ++...+|||||||+|.++..++++.+  + ++.+|+ +..++.|++      .+++.++.+|..+ ++|.+ 
T Consensus         7 ~l~~~~~-~~~~~rILDiGcGtG~~~~~la~~~~--~-v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~   82 (234)
T d1xxla_           7 LMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--E-CIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDS   82 (234)
T ss_dssp             HHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--E-EEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTC
T ss_pred             HHHHHhC-CCCCCEEEEeCCcCcHHHHHHHHhCC--e-EEEEeCChhhhhhhhhhhcccccccccccccccccccccccc
Confidence            4567777 88889999999999999999999874  5 789997 566777764      2789999999987 66764 


Q ss_pred             -cEEEec
Q 037818          193 -DAIFMK  198 (199)
Q Consensus       193 -D~~~l~  198 (199)
                       |+|+..
T Consensus        83 fD~v~~~   89 (234)
T d1xxla_          83 FDIITCR   89 (234)
T ss_dssp             EEEEEEE
T ss_pred             cceeeee
Confidence             998864

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.52  E-value=4.8e-08  Score=72.44  Aligned_cols=73  Identities=10%  Similarity=0.140  Sum_probs=57.3

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC--------CCCceEEeCCCCCCCCc-
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS--------ILGVTHIGGDTFKSIPA-  191 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~--------~~ri~~~~gd~f~~~P~-  191 (199)
                      -+++.++ -....+|||||||+|.++..+++..|+   ++++|. |..++.+++        ..++++..+|++++++. 
T Consensus        43 lLi~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~---v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~  118 (194)
T d1dusa_          43 ILVENVV-VDKDDDILDLGCGYGVIGIALADEVKS---TTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR  118 (194)
T ss_dssp             HHHHHCC-CCTTCEEEEETCTTSHHHHHHGGGSSE---EEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred             HHHHhCC-cCCCCeEEEEeecCChhHHHHHhhccc---cceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccC
Confidence            3556665 556689999999999999999999885   456676 777777764        25799999999987665 


Q ss_pred             -ccEEEec
Q 037818          192 -ADAIFMK  198 (199)
Q Consensus       192 -aD~~~l~  198 (199)
                       .|++++.
T Consensus       119 ~fD~Ii~~  126 (194)
T d1dusa_         119 KYNKIITN  126 (194)
T ss_dssp             CEEEEEEC
T ss_pred             CceEEEEc
Confidence             3999874

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.51  E-value=5.5e-08  Score=75.81  Aligned_cols=66  Identities=17%  Similarity=0.209  Sum_probs=57.0

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-CCCceEEeCCCCC-CCCcc--cEEEe
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-ILGVTHIGGDTFK-SIPAA--DAIFM  197 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-~~ri~~~~gd~f~-~~P~a--D~~~l  197 (199)
                      .+..+|||||||+|.++..+++.+|+.+ ++.+|+ |..++.|++ .++++++.+|..+ +++.+  |+++.
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~-~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~  153 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEIT-TFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIR  153 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSE-EEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCE-EEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEee
Confidence            4568999999999999999999999999 999998 777787765 4899999999987 67663  88875

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=98.49  E-value=5.8e-08  Score=73.45  Aligned_cols=67  Identities=16%  Similarity=0.163  Sum_probs=54.4

Q ss_pred             CCcceEEEecCCccHHHHHHHHH--CCCCCeeeeccc-hHHHhcCCC-------CCCceEEeCCCCC-CCCcccEEEec
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQK--HRFICEGINFDL-PEVVGEAPS-------ILGVTHIGGDTFK-SIPAADAIFMK  198 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~--~P~l~~~~v~Dl-p~v~~~a~~-------~~ri~~~~gd~f~-~~P~aD~~~l~  198 (199)
                      ....+|||||||+|..+..+++.  +|+.+ ++.+|+ |..++.|++       ..++++..+|+.+ +.+..|++++.
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~-v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~  115 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNINQPNVK-IIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILN  115 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCCCSSCE-EEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEE
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhcCCCCc-eEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEe
Confidence            45579999999999999999986  58999 999998 888888864       2678888999886 44456777664

>d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.47  E-value=1.5e-08  Score=67.63  Aligned_cols=46  Identities=20%  Similarity=0.284  Sum_probs=40.4

Q ss_pred             cchhccccccccC--CCCCCHHHHHHHcCCCCCCC-cchHHHHHHHHhhCC
Q 037818            4 NECREGGKKVRLA--NTPLSASQILTRILPSGDGD-AENLQRILRLLTSYG   51 (199)
Q Consensus         4 ~~A~~lglf~~L~--~g~~t~~eLA~~~~~~~~~~-~~~l~rlL~~l~~~g   51 (199)
                      ++|+++||||.|.  ++|+|++|||+++++  ++. ++.+.|+||+|++.|
T Consensus        27 ~~aveLgi~d~l~~~~~p~t~~eLa~~~~~--~~~~~~~L~RlLR~L~~~g   75 (101)
T d1fp2a1          27 KWAVEMNIPNIIQNHGKPISLSNLVSILQV--PSSKIGNVRRLMRYLAHNG   75 (101)
T ss_dssp             HHHHHTTHHHHHHHHTSCEEHHHHHHHHTC--CGGGHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCcHHHHHHcCCCCCHHHHHHHcCC--CCccchHHHHHHHHHHhCC
Confidence            5799999999995  489999999999999  653 246999999999999

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.38  E-value=1.9e-07  Score=73.18  Aligned_cols=68  Identities=15%  Similarity=0.137  Sum_probs=56.4

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCC-CCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC-CCCcc-cEEEec
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK-SIPAA-DAIFMK  198 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~-~~P~a-D~~~l~  198 (199)
                      ..+..+|||||||+|.++..+++.+|. .+ .+.+|. |..++.|++.     .+++|+.+|+.+ +++.. |++++.
T Consensus        25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~-v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~fD~v~~~  101 (281)
T d2gh1a1          25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSK-YTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICH  101 (281)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCE-EEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEE
T ss_pred             cCCcCEEEEecCcCCHHHHHHHHhCCCCCE-EEEEecchhHhhhhhcccccccccccccccccccccccCCceEEEEe
Confidence            677789999999999999999999985 66 899997 6778877642     478999999987 55554 999875

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.36  E-value=2.7e-07  Score=70.37  Aligned_cols=72  Identities=18%  Similarity=0.284  Sum_probs=56.4

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC-CCCcc-c
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK-SIPAA-D  193 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~-~~P~a-D  193 (199)
                      .+...+. ..+.++|||||||+|.++..++++..  + ++.+|+ |..++.|++.     .++++..+|+.+ ++|.- |
T Consensus        32 ~~~~~~~-~~~~~~iLDiGcGtG~~~~~l~~~~~--~-v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD  107 (251)
T d1wzna1          32 EIFKEDA-KREVRRVLDLACGTGIPTLELAERGY--E-VVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFD  107 (251)
T ss_dssp             HHHHHTC-SSCCCEEEEETCTTCHHHHHHHHTTC--E-EEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEE
T ss_pred             HHHHHhc-CCCCCEEEEeCCCCCccchhhcccce--E-EEEEeeccccccccccccccccccchheehhhhhcccccccc
Confidence            3445554 56678999999999999999999764  6 788998 5788887753     589999999987 66654 8


Q ss_pred             EEEe
Q 037818          194 AIFM  197 (199)
Q Consensus       194 ~~~l  197 (199)
                      +++.
T Consensus       108 ~I~~  111 (251)
T d1wzna1         108 AVTM  111 (251)
T ss_dssp             EEEE
T ss_pred             hHhh
Confidence            8775

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.34  E-value=1e-07  Score=70.22  Aligned_cols=72  Identities=22%  Similarity=0.207  Sum_probs=55.9

Q ss_pred             HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCC---CCCc
Q 037818          123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFK---SIPA  191 (199)
Q Consensus       123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~---~~P~  191 (199)
                      ++..+. .....+|||||||+|.++..+++..+  + ++.+|. |..++.|+++       +||+++.+|..+   +.+.
T Consensus        25 il~~l~-~~~g~~VLDiGcGsG~~s~~lA~~~~--~-V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~  100 (186)
T d1l3ia_          25 IMCLAE-PGKNDVAVDVGCGTGGVTLELAGRVR--R-VYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD  100 (186)
T ss_dssp             HHHHHC-CCTTCEEEEESCTTSHHHHHHHTTSS--E-EEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred             HHHhcC-CCCCCEEEEEECCeEcccccccccce--E-EEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCC
Confidence            344455 56778999999999999999988765  5 888998 7888888753       799999999876   2334


Q ss_pred             ccEEEec
Q 037818          192 ADAIFMK  198 (199)
Q Consensus       192 aD~~~l~  198 (199)
                      .|++++.
T Consensus       101 ~D~v~~~  107 (186)
T d1l3ia_         101 IDIAVVG  107 (186)
T ss_dssp             EEEEEES
T ss_pred             cCEEEEe
Confidence            5888763

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=98.33  E-value=1.9e-07  Score=72.16  Aligned_cols=76  Identities=17%  Similarity=0.251  Sum_probs=58.9

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----CCCceEEeCCCCC-CCCc-c-
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----ILGVTHIGGDTFK-SIPA-A-  192 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----~~ri~~~~gd~f~-~~P~-a-  192 (199)
                      ..+++.++ ..+..+|||||||+|.++..+++.+++ + ++.+|. +..++.|++    .+++++..+|+.+ +++. . 
T Consensus        83 ~~fl~~l~-~~~~~~vLD~GcG~G~~t~~ll~~~~~-~-v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f  159 (254)
T d1xtpa_          83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKLYA-T-TDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTY  159 (254)
T ss_dssp             HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHHCS-E-EEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCE
T ss_pred             HHHHhhCC-CCCCCeEEEecccCChhhHHHHhhcCc-e-EEEEcCCHHHHHhhhccccccccceeEEccccccccCCCcc
Confidence            34556666 567789999999999999999988765 6 778886 677787764    3668999999986 4444 3 


Q ss_pred             cEEEecC
Q 037818          193 DAIFMKW  199 (199)
Q Consensus       193 D~~~l~~  199 (199)
                      |+|++.+
T Consensus       160 D~I~~~~  166 (254)
T d1xtpa_         160 DLIVIQW  166 (254)
T ss_dssp             EEEEEES
T ss_pred             ceEEeec
Confidence            9998754

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=1.2e-07  Score=71.52  Aligned_cols=67  Identities=13%  Similarity=0.079  Sum_probs=53.4

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCC-CCCc-c-cEEEec
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFK-SIPA-A-DAIFMK  198 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~-~~P~-a-D~~~l~  198 (199)
                      ..+..+|||||||+|.++..+++.++. + ++.+|. |..++.|++.      ++++|+.+|+.+ +++. . |+|++.
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~-v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~  134 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLFR-E-VDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQ  134 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTCS-E-EEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEE
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcCC-E-EEEeecCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            345689999999999999999888774 6 889998 7888877652      578999999987 4444 3 998864

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=3.1e-07  Score=73.55  Aligned_cols=76  Identities=14%  Similarity=0.167  Sum_probs=60.2

Q ss_pred             HHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC---------------CCCceEEeCC
Q 037818          121 TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS---------------ILGVTHIGGD  184 (199)
Q Consensus       121 ~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~---------------~~ri~~~~gd  184 (199)
                      ..+++.+. .....+|+|||||.|.++..+++.+|..+ ++.+|+ |..++.|++               ..+|+++.||
T Consensus       141 ~~~~~~~~-l~~~~~vlD~GcG~G~~~~~~a~~~~~~~-~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd  218 (328)
T d1nw3a_         141 AQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKH-HYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD  218 (328)
T ss_dssp             HHHHHHSC-CCTTCEEEEETCTTSHHHHHHHHHCCCSE-EEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECC
T ss_pred             HHHHHHcC-CCCCCEEEEcCCCCCHHHHHHHHHhCCCe-EEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECc
Confidence            45667776 77778999999999999999999999988 999997 555555432               3689999999


Q ss_pred             CCC-CCC----cccEEEec
Q 037818          185 TFK-SIP----AADAIFMK  198 (199)
Q Consensus       185 ~f~-~~P----~aD~~~l~  198 (199)
                      +.+ ++.    .+|++++.
T Consensus       219 ~~~~~~~~~~~~advi~~~  237 (328)
T d1nw3a_         219 FLSEEWRERIANTSVIFVN  237 (328)
T ss_dssp             TTSHHHHHHHHHCSEEEEC
T ss_pred             ccccccccccCcceEEEEc
Confidence            987 332    36888875

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.24  E-value=9.2e-07  Score=65.95  Aligned_cols=72  Identities=19%  Similarity=0.243  Sum_probs=54.7

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-----CCCceEEeCCCCC-CCCcc--
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-----ILGVTHIGGDTFK-SIPAA--  192 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-----~~ri~~~~gd~f~-~~P~a--  192 (199)
                      .++..+  ...-.+|||||||+|.++..+++.  ..+ ++.+|. +..++.|++     ..++.++.+|..+ ++|..  
T Consensus        29 ~~~~~~--l~~~~~ILDiGcG~G~~~~~la~~--~~~-v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~f  103 (226)
T d1ve3a1          29 PLLMKY--MKKRGKVLDLACGVGGFSFLLEDY--GFE-VVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTF  103 (226)
T ss_dssp             HHHHHS--CCSCCEEEEETCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCE
T ss_pred             HHHHHh--cCCCCEEEEECCCcchhhhhHhhh--hcc-cccccccccchhhhhhhhccccccccccccccccccccCcCc
Confidence            344443  234479999999999999999985  457 889997 677877764     2678999999987 66653  


Q ss_pred             cEEEec
Q 037818          193 DAIFMK  198 (199)
Q Consensus       193 D~~~l~  198 (199)
                      |++++.
T Consensus       104 D~I~~~  109 (226)
T d1ve3a1         104 DYVIFI  109 (226)
T ss_dssp             EEEEEE
T ss_pred             eEEEEe
Confidence            988864

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=98.23  E-value=3.5e-07  Score=69.06  Aligned_cols=66  Identities=20%  Similarity=0.247  Sum_probs=52.6

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC--CCCceEEeCCCCC-CCCcc-cEEEec
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS--ILGVTHIGGDTFK-SIPAA-DAIFMK  198 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~--~~ri~~~~gd~f~-~~P~a-D~~~l~  198 (199)
                      +.+..+|||||||+|.++..++++..  + ++.+|. |..++.+++  .++++++.+|+.+ +.+.. |++++.
T Consensus        18 ~~~~~~VLDiGcG~G~~~~~l~~~g~--~-v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~   88 (225)
T d2p7ia1          18 FFRPGNLLELGSFKGDFTSRLQEHFN--D-ITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLT   88 (225)
T ss_dssp             GCCSSCEEEESCTTSHHHHHHTTTCS--C-EEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEE
T ss_pred             hCCCCcEEEEeCCCcHHHHHHHHcCC--e-EEEEeCcHHHhhhhhccccccccccccccccccccccccccccc
Confidence            44567899999999999999998864  6 889998 778888775  3679999999876 34444 998875

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.23  E-value=7.3e-07  Score=65.88  Aligned_cols=72  Identities=14%  Similarity=0.078  Sum_probs=54.0

Q ss_pred             HhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC------CCCceEEeCCCCCC-CCcc-c
Q 037818          123 VLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS------ILGVTHIGGDTFKS-IPAA-D  193 (199)
Q Consensus       123 ~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~------~~ri~~~~gd~f~~-~P~a-D  193 (199)
                      +++... +....+|||||||+|..+..++++.+  + ++.+|. +..++.+++      .+++++..+|+.+. .+.. |
T Consensus        22 ~~~~~~-~~~~grvLDiGcG~G~~~~~la~~g~--~-v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD   97 (198)
T d2i6ga1          22 VLAAAK-VVAPGRTLDLGCGNGRNSLYLAANGY--D-VTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYD   97 (198)
T ss_dssp             HHHHHT-TSCSCEEEEETCTTSHHHHHHHHTTC--E-EEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEE
T ss_pred             HHHHcc-cCCCCcEEEECCCCCHHHHHHHHHhh--h-hccccCcHHHHHHHHHHhhhccccchhhhheeccccccccccc
Confidence            444444 55557999999999999999999864  5 778998 556776653      27899999999974 3344 9


Q ss_pred             EEEec
Q 037818          194 AIFMK  198 (199)
Q Consensus       194 ~~~l~  198 (199)
                      +++..
T Consensus        98 ~I~~~  102 (198)
T d2i6ga1          98 FILST  102 (198)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            88764

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.22  E-value=3.9e-07  Score=67.76  Aligned_cols=65  Identities=22%  Similarity=0.261  Sum_probs=53.1

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-CCceEEeCCCCCCCCc-ccEEEec
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-LGVTHIGGDTFKSIPA-ADAIFMK  198 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-~ri~~~~gd~f~~~P~-aD~~~l~  198 (199)
                      +++ ++|||+|||+|.++.++++..+. + ++.+|. |..++.++++ .+++++.+|+.+ +|. .|+|+++
T Consensus        47 l~G-k~VLDlGcGtG~l~i~a~~~ga~-~-V~~vDid~~a~~~ar~N~~~~~~~~~D~~~-l~~~fD~Vi~N  114 (197)
T d1ne2a_          47 IGG-RSVIDAGTGNGILACGSYLLGAE-S-VTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIMN  114 (197)
T ss_dssp             SBT-SEEEEETCTTCHHHHHHHHTTBS-E-EEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEEC
T ss_pred             CCC-CEEEEeCCCCcHHHHHHHHcCCC-c-ccccccCHHHHHHHHHccccccEEEEehhh-cCCcceEEEeC
Confidence            554 89999999999999988887665 6 888997 7888888875 889999999875 444 4999875

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.20  E-value=4.4e-07  Score=67.87  Aligned_cols=64  Identities=16%  Similarity=0.201  Sum_probs=50.8

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC------CCCceEEeCCCCC---CCCcc--cEEEe
Q 037818          133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS------ILGVTHIGGDTFK---SIPAA--DAIFM  197 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~------~~ri~~~~gd~f~---~~P~a--D~~~l  197 (199)
                      ...|||||||+|.++..+++.+|+.. .+.+|. +..+..+.+      .++|.++.+|...   -+|.+  |.+++
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~~~-~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i  105 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPDIN-YIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYL  105 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTTSE-EEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEE
T ss_pred             CceEEEEEecCcHHHHHHHHhCCCCc-EEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhcccc
Confidence            36899999999999999999999999 999996 665555432      3789999999864   25552  66554

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.18  E-value=8e-07  Score=66.43  Aligned_cols=64  Identities=17%  Similarity=0.207  Sum_probs=50.6

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC------CCCceEEeCCCCC---CCCc--ccEEEe
Q 037818          133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS------ILGVTHIGGDTFK---SIPA--ADAIFM  197 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~------~~ri~~~~gd~f~---~~P~--aD~~~l  197 (199)
                      ...+||||||+|.++..+++.+|+.. .+.+|. +..+..+.+      .++|.++.+|..+   -+|.  .|.+++
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~~~-~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i  107 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPDIN-YIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYL  107 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEE
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCCCc-eEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcc
Confidence            36899999999999999999999999 999996 555655532      3789999999754   3565  266654

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.17  E-value=1.2e-06  Score=68.01  Aligned_cols=89  Identities=10%  Similarity=0.068  Sum_probs=71.4

Q ss_pred             HHHHHHhccchhh----HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHH-CCCCCeeeeccc-hHHHhcCCC------
Q 037818          107 LMRKAMSGVSVPF----ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQK-HRFICEGINFDL-PEVVGEAPS------  174 (199)
Q Consensus       107 ~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~-~P~l~~~~v~Dl-p~v~~~a~~------  174 (199)
                      .|...|...++..    +..++...+ .+...+|||+|||+|.++..|+++ .|+-+ .+.+|. |+.++.|++      
T Consensus        68 ~~~~~~~r~tqiiypkD~s~Ii~~l~-i~PG~~VLE~G~GsG~lt~~La~~vgp~G~-V~~~d~~~~~~~~Ar~n~~~~~  145 (264)
T d1i9ga_          68 DYVMSMPRGPQVIYPKDAAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQ-VISYEQRADHAEHARRNVSGCY  145 (264)
T ss_dssp             HHHTTSCSCSCCCCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSE-EEEECSCHHHHHHHHHHHHHHH
T ss_pred             HHHhhccCCccccchHHHHHHHHHhC-CCCCCEEEecCcCCcHHHHHHHHhhCCCcE-EEEecCCHHHHHHHHHhhhhhc
Confidence            4667777666654    345666777 777899999999999999999998 79999 999997 677777764      


Q ss_pred             ---CCCceEEeCCCCC-CCCcc--cEEEe
Q 037818          175 ---ILGVTHIGGDTFK-SIPAA--DAIFM  197 (199)
Q Consensus       175 ---~~ri~~~~gd~f~-~~P~a--D~~~l  197 (199)
                         .++++++.+|+.+ ++|..  |.+++
T Consensus       146 ~~~~~nv~~~~~d~~~~~~~~~~fDaV~l  174 (264)
T d1i9ga_         146 GQPPDNWRLVVSDLADSELPDGSVDRAVL  174 (264)
T ss_dssp             TSCCTTEEEECSCGGGCCCCTTCEEEEEE
T ss_pred             cCCCceEEEEecccccccccCCCcceEEE
Confidence               2789999999986 57773  98876

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=98.16  E-value=1.3e-06  Score=67.16  Aligned_cols=90  Identities=13%  Similarity=0.103  Sum_probs=61.2

Q ss_pred             HHHHHHhccchhhH----HHHhhhCCCCCCcceEEEecCCccHHHHHHHHH-CCCCCeeeeccc-hHHHhcCCC------
Q 037818          107 LMRKAMSGVSVPFI----TSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQK-HRFICEGINFDL-PEVVGEAPS------  174 (199)
Q Consensus       107 ~f~~~m~~~~~~~~----~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~-~P~l~~~~v~Dl-p~v~~~a~~------  174 (199)
                      .|...|...++...    ..++...+ .....+|||+|||+|.++..+++. .|+-+ .+.+|. ++.++.|++      
T Consensus        57 ~~~~~~~r~~qiiypkD~~~Ii~~l~-i~pG~rVLEiG~GsG~lt~~la~~v~~~g~-V~~vD~~e~~~~~A~~n~~~~~  134 (250)
T d1yb2a1          57 YFGRVIRRNTQIISEIDASYIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGT-LTVVERDEDNLKKAMDNLSEFY  134 (250)
T ss_dssp             GHHHHC------------------CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSE-EEEECSCHHHHHHHHHHHHTTS
T ss_pred             HHHhhCCCCCcccCHHHHHHHHHHcC-CCCcCEEEEeeeeCcHHHHHHHHHhCCCcE-EEEEECCHHHHHHHHHHHHHhc
Confidence            46666765555432    34555566 666789999999999999999987 68888 999997 556766664      


Q ss_pred             -CCCceEEeCCCCCCCCc--ccEEEec
Q 037818          175 -ILGVTHIGGDTFKSIPA--ADAIFMK  198 (199)
Q Consensus       175 -~~ri~~~~gd~f~~~P~--aD~~~l~  198 (199)
                       ..++++..+|+.+.+|.  .|++++.
T Consensus       135 ~~~nv~~~~~Di~~~~~~~~fD~V~ld  161 (250)
T d1yb2a1         135 DIGNVRTSRSDIADFISDQMYDAVIAD  161 (250)
T ss_dssp             CCTTEEEECSCTTTCCCSCCEEEEEEC
T ss_pred             CCCceEEEEeeeecccccceeeeeeec
Confidence             27899999999987776  3988863

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.16  E-value=4e-07  Score=69.45  Aligned_cols=63  Identities=21%  Similarity=0.198  Sum_probs=50.2

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC-CCCcc-cEEEe
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK-SIPAA-DAIFM  197 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~-~~P~a-D~~~l  197 (199)
                      ..++|||||||+|.++..+++++.  + ++.+|+ |..++.|++.     .+++++.+|+.+ +++.. |+++.
T Consensus        37 ~~~~vLDiGCG~G~~~~~l~~~g~--~-v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~  107 (246)
T d1y8ca_          37 VFDDYLDLACGTGNLTENLCPKFK--N-TWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITC  107 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSS--E-EEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEE
T ss_pred             CCCeEEEEeCcCCHHHHHHHHhCC--c-cEeeccchhhhhhccccccccCccceeeccchhhhcccccccccce
Confidence            347899999999999999999875  5 778998 5667777642     579999999987 45554 98764

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.08  E-value=2.2e-06  Score=64.28  Aligned_cols=75  Identities=16%  Similarity=0.290  Sum_probs=60.3

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCC------CCCceEEeCCCCCCCCc-c
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPS------ILGVTHIGGDTFKSIPA-A  192 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~------~~ri~~~~gd~f~~~P~-a  192 (199)
                      .+++.++ .+...+|||||||+|.++..+++.. |+.+ ++.+|. |+.++.|++      .+++.++.+|..+..|. +
T Consensus        66 ~~l~~l~-l~~g~~VLdiG~GtG~~s~~la~~~~~~g~-V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~  143 (213)
T d1dl5a1          66 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGL-VVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS  143 (213)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred             HHHHhhh-ccccceEEEecCccchhHHHHHHHhCCCCc-EEEeecchhhHHHhhhhHhhhcccccccccCchHHcccccc
Confidence            4567777 8888999999999999999999876 6777 889986 777888775      27899999999875443 3


Q ss_pred             --cEEEec
Q 037818          193 --DAIFMK  198 (199)
Q Consensus       193 --D~~~l~  198 (199)
                        |++++.
T Consensus       144 ~fD~I~~~  151 (213)
T d1dl5a1         144 PYDVIFVT  151 (213)
T ss_dssp             CEEEEEEC
T ss_pred             chhhhhhh
Confidence              988864

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=98.02  E-value=2.2e-06  Score=64.59  Aligned_cols=64  Identities=17%  Similarity=0.214  Sum_probs=50.1

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCCCCceEEeCCCCC-CCCc-c-cEEEe
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSILGVTHIGGDTFK-SIPA-A-DAIFM  197 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~~ri~~~~gd~f~-~~P~-a-D~~~l  197 (199)
                      .+..+|||||||+|.++..+++.  ..+ ++.+|. |..++.|++.....++.+|+.+ ++|. . |+++.
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~--~~~-v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~  108 (246)
T d2avna1          41 KNPCRVLDLGGGTGKWSLFLQER--GFE-VVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLA  108 (246)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTT--TCE-EEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCCEEEEECCCCchhccccccc--ceE-EEEeecccccccccccccccccccccccccccccccccceee
Confidence            45579999999999999999876  467 899998 7888888875444567788876 6665 3 98774

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=98.01  E-value=8.6e-07  Score=68.46  Aligned_cols=85  Identities=12%  Similarity=0.131  Sum_probs=57.5

Q ss_pred             HHHHHhccchhhHHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEE
Q 037818          108 MRKAMSGVSVPFITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHI  181 (199)
Q Consensus       108 f~~~m~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~  181 (199)
                      |-..-+..++.....+ ..+.  ...++|||||||+|.+++.+++..  .+ ++.+|. |..++.|+++     -++++.
T Consensus        99 FGTG~H~TT~l~l~~l-~~~~--~~g~~VLDiGcGsG~l~i~aa~~g--~~-V~gvDis~~av~~A~~na~~n~~~~~~~  172 (254)
T d2nxca1          99 FGTGHHETTRLALKAL-ARHL--RPGDKVLDLGTGSGVLAIAAEKLG--GK-ALGVDIDPMVLPQAEANAKRNGVRPRFL  172 (254)
T ss_dssp             ---CCSHHHHHHHHHH-HHHC--CTTCEEEEETCTTSHHHHHHHHTT--CE-EEEEESCGGGHHHHHHHHHHTTCCCEEE
T ss_pred             cCccccchhhHHHHHH-Hhhc--CccCEEEEcccchhHHHHHHHhcC--CE-EEEEECChHHHHHHHHHHHHcCCceeEE
Confidence            6555444444444433 3333  345799999999999999888754  57 889997 7778887753     457888


Q ss_pred             eCCCCCCCCc--ccEEEec
Q 037818          182 GGDTFKSIPA--ADAIFMK  198 (199)
Q Consensus       182 ~gd~f~~~P~--aD~~~l~  198 (199)
                      .+|+.+.+|.  .|+++.+
T Consensus       173 ~~d~~~~~~~~~fD~V~an  191 (254)
T d2nxca1         173 EGSLEAALPFGPFDLLVAN  191 (254)
T ss_dssp             ESCHHHHGGGCCEEEEEEE
T ss_pred             eccccccccccccchhhhc
Confidence            9998875554  4888753

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=98.00  E-value=3.2e-06  Score=61.39  Aligned_cols=69  Identities=12%  Similarity=0.030  Sum_probs=51.6

Q ss_pred             hhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC------------------CCCceEEeCCC
Q 037818          125 DGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS------------------ILGVTHIGGDT  185 (199)
Q Consensus       125 ~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~------------------~~ri~~~~gd~  185 (199)
                      ..+. .....+|||||||+|..+..++++  ..+ ++.+|+ +..++.|++                  ...+++..+|+
T Consensus        14 ~~l~-~~~~~rvLd~GCG~G~~a~~la~~--G~~-V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   89 (201)
T d1pjza_          14 SSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYH-VVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF   89 (201)
T ss_dssp             HHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCE-EEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC
T ss_pred             HHcC-CCCCCEEEEecCcCCHHHHHHHHc--CCc-eEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccc
Confidence            3344 667789999999999999999987  578 999997 566666653                  14578999999


Q ss_pred             CCCCCc---c-cEEEe
Q 037818          186 FKSIPA---A-DAIFM  197 (199)
Q Consensus       186 f~~~P~---a-D~~~l  197 (199)
                      ++..|.   . |+++.
T Consensus        90 ~~l~~~~~~~~D~i~~  105 (201)
T d1pjza_          90 FALTARDIGHCAAFYD  105 (201)
T ss_dssp             SSSTHHHHHSEEEEEE
T ss_pred             cccccccccceeEEEE
Confidence            974332   2 77764

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=97.99  E-value=3.5e-06  Score=62.31  Aligned_cols=57  Identities=18%  Similarity=0.185  Sum_probs=45.5

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCCCCceEEeCCCCC-CCCc-c-cEEEec
Q 037818          134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSILGVTHIGGDTFK-SIPA-A-DAIFMK  198 (199)
Q Consensus       134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~~ri~~~~gd~f~-~~P~-a-D~~~l~  198 (199)
                      .+|||||||+|.++..+.      + .+.+|. |..++.+++. +++++.+|+.+ ++|. . |++++.
T Consensus        38 ~~vLDiGcG~G~~~~~~~------~-~~giD~s~~~~~~a~~~-~~~~~~~d~~~l~~~~~~fD~I~~~   98 (208)
T d1vlma_          38 GRGVEIGVGTGRFAVPLK------I-KIGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMV   98 (208)
T ss_dssp             SCEEEETCTTSTTHHHHT------C-CEEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEE
T ss_pred             CeEEEECCCCcccccccc------e-EEEEeCChhhccccccc-ccccccccccccccccccccccccc
Confidence            589999999999988873      4 678897 7778877753 69999999986 6665 3 999875

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=9.8e-07  Score=66.86  Aligned_cols=64  Identities=13%  Similarity=0.036  Sum_probs=47.7

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCC---CCCcc--cEEEe
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFK---SIPAA--DAIFM  197 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~---~~P~a--D~~~l  197 (199)
                      ...+|||||||+|..+..++++.|. + .+++|+ |.+++.|++.     .++.++.+|...   ++|.+  |.+++
T Consensus        53 ~g~~VLdIGcG~G~~a~~~a~~~~~-~-v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~f  127 (229)
T d1zx0a1          53 KGGRVLEVGFGMAIAASKVQEAPID-E-HWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILY  127 (229)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCEE-E-EEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred             CCCeEEEeeccchHHHHHHHHcCCC-e-EEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceee
Confidence            3479999999999999999987663 6 888997 7888887642     567777777542   46653  66653

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.90  E-value=4.1e-06  Score=61.83  Aligned_cols=66  Identities=20%  Similarity=0.109  Sum_probs=54.9

Q ss_pred             HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-----CCCceEEeCCCCC
Q 037818          120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-----ILGVTHIGGDTFK  187 (199)
Q Consensus       120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-----~~ri~~~~gd~f~  187 (199)
                      ...+++.++ -.....+||++||+|.++..+++++|+.+ ++.+|. |+.++.+++     .+|++++.++|-+
T Consensus        12 l~evi~~l~-~~~~~~~lD~t~G~Gghs~~il~~~~~~~-vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~   83 (192)
T d1m6ya2          12 VREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCR-IIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYRE   83 (192)
T ss_dssp             HHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGG
T ss_pred             HHHHHHhhC-CCCCCEEEEecCCCcHHHHHHHhcCCCCe-EEEeechHHHHHHHHHhhccccccccchhHHHhh
Confidence            345566555 45568999999999999999999999999 999997 788888764     2799999999864

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=97.88  E-value=8.1e-06  Score=63.23  Aligned_cols=89  Identities=16%  Similarity=0.060  Sum_probs=68.8

Q ss_pred             HHHHHHhccchhh----HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCCCC-----
Q 037818          107 LMRKAMSGVSVPF----ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAPSI-----  175 (199)
Q Consensus       107 ~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~~~-----  175 (199)
                      .|...|...++..    +..++...+ .....+|||+|||+|.++..+++.. |+-+ ++.+|. |+.++.|+++     
T Consensus        75 d~~~~~~r~~qiiypkd~~~Ii~~l~-i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~-V~~vD~~~~~~~~A~~~~~~~g  152 (266)
T d1o54a_          75 DEIMNMKRRTQIVYPKDSSFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGK-VFAYEKREEFAKLAESNLTKWG  152 (266)
T ss_dssp             HHHHTCCC-CCCCCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCE-EEEECCCHHHHHHHHHHHHHTT
T ss_pred             HHHhhccCCccccchHHHHHHHHhhC-CCCCCEEEECCCCCCHHHHHHHHHhCCCcE-EEEEeCCHHHHHHHHHHHHHhc
Confidence            3666776656544    335677777 7788999999999999999999875 8889 999997 7888887752     


Q ss_pred             --CCceEEeCCCCCCCCc--ccEEEe
Q 037818          176 --LGVTHIGGDTFKSIPA--ADAIFM  197 (199)
Q Consensus       176 --~ri~~~~gd~f~~~P~--aD~~~l  197 (199)
                        +++++..+|+...++.  .|.+++
T Consensus       153 ~~~~v~~~~~d~~~~~~~~~~D~V~~  178 (266)
T d1o54a_         153 LIERVTIKVRDISEGFDEKDVDALFL  178 (266)
T ss_dssp             CGGGEEEECCCGGGCCSCCSEEEEEE
T ss_pred             cccCcEEEeccccccccccceeeeEe
Confidence              6889999998776655  377765

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=97.86  E-value=5.5e-06  Score=63.30  Aligned_cols=73  Identities=16%  Similarity=0.139  Sum_probs=53.5

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-------CCCceEEeCCCCC-CC-Cc
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-------ILGVTHIGGDTFK-SI-PA  191 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-------~~ri~~~~gd~f~-~~-P~  191 (199)
                      .+++.+.  +...+|||||||+|..+..+++..+. + .+.+|+ |..++.|++       ..++.+..+|.+. ++ +.
T Consensus        16 ~lI~~~~--~~~~~VLDlGCG~G~~~~~~~~~~~~-~-v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~   91 (252)
T d1ri5a_          16 CLIRLYT--KRGDSVLDLGCGKGGDLLKYERAGIG-E-YYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLG   91 (252)
T ss_dssp             HHHHHHC--CTTCEEEEETCTTTTTHHHHHHHTCS-E-EEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCS
T ss_pred             HHHHHhC--CCcCEEEEecccCcHHHHHHHHcCCC-e-EEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccccc
Confidence            3455553  45589999999999999999887543 5 789997 566777753       2579999999986 33 23


Q ss_pred             --ccEEEec
Q 037818          192 --ADAIFMK  198 (199)
Q Consensus       192 --aD~~~l~  198 (199)
                        .|+|++.
T Consensus        92 ~~fD~V~~~  100 (252)
T d1ri5a_          92 KEFDVISSQ  100 (252)
T ss_dssp             SCEEEEEEE
T ss_pred             ccceEEEEc
Confidence              3998763

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.86  E-value=6.7e-06  Score=61.04  Aligned_cols=66  Identities=20%  Similarity=0.115  Sum_probs=50.2

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-----CCceEEeCCCCCCCCcccEEEec
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-----LGVTHIGGDTFKSIPAADAIFMK  198 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-----~ri~~~~gd~f~~~P~aD~~~l~  198 (199)
                      +++ ++|||+|||+|.++.+++.+.+ .+ ++.+|. |..++.++++     .++++..+|..+.-...|+|+++
T Consensus        45 l~g-~~vLDlg~GtG~l~i~a~~~g~-~~-v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~n  116 (201)
T d1wy7a1          45 IEG-KVVADLGAGTGVLSYGALLLGA-KE-VICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMN  116 (201)
T ss_dssp             STT-CEEEEETCTTCHHHHHHHHTTC-SE-EEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEEC
T ss_pred             CCC-CEEEECcCcchHHHHHHHHcCC-CE-EEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEc
Confidence            454 7999999999999999887654 47 899997 6777777653     67889999987632235988864

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.84  E-value=6.5e-06  Score=65.20  Aligned_cols=63  Identities=22%  Similarity=0.180  Sum_probs=48.9

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCC-------CCCceEEeCCCCC-CCCc--ccEEEe
Q 037818          133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPS-------ILGVTHIGGDTFK-SIPA--ADAIFM  197 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~-------~~ri~~~~gd~f~-~~P~--aD~~~l  197 (199)
                      .++|||||||+|.++..++++.+. + ++.+|..+....+++       .++|+++.+|..+ +.|.  .|+++.
T Consensus        34 ~~~VLDiGcG~G~ls~~aa~~Ga~-~-V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs  106 (316)
T d1oria_          34 DKVVLDVGSGTGILCMFAAKAGAR-K-VIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIIS  106 (316)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCS-E-EEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEE
T ss_pred             cCEEEEEecCCcHHHHHHHHhCCC-E-EEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEee
Confidence            378999999999999998887654 6 889998655544432       2889999999997 5664  488864

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.84  E-value=7.3e-06  Score=65.21  Aligned_cols=63  Identities=21%  Similarity=0.211  Sum_probs=50.0

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCC-------CCCceEEeCCCCC-CCCc--ccEEEe
Q 037818          133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPS-------ILGVTHIGGDTFK-SIPA--ADAIFM  197 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~-------~~ri~~~~gd~f~-~~P~--aD~~~l  197 (199)
                      .++|||||||+|.++..++++... + ++.+|..+.+..+++       .++|+++.+|+.+ ++|.  .|+++.
T Consensus        39 ~~~VLDlGcGtG~ls~~aa~~Ga~-~-V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~s  111 (328)
T d1g6q1_          39 DKIVLDVGCGTGILSMFAAKHGAK-H-VIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIIS  111 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTCCS-E-EEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEE
T ss_pred             cCEEEEeCCCCCHHHHHHHHhCCC-E-EEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEE
Confidence            479999999999999988876543 6 889998877666653       2789999999997 6665  488864

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=9.3e-06  Score=64.03  Aligned_cols=66  Identities=21%  Similarity=0.176  Sum_probs=50.5

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCC-------CCCceEEeCCCCC-CCCc--ccEEEe
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPS-------ILGVTHIGGDTFK-SIPA--ADAIFM  197 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~-------~~ri~~~~gd~f~-~~P~--aD~~~l  197 (199)
                      ..+.++|||||||+|.++..++++.+. + ++.+|..+....+++       .++|+++.+|..+ +.|.  .|+++.
T Consensus        33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga~-~-V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivs  108 (311)
T d2fyta1          33 IFKDKVVLDVGCGTGILSMFAAKAGAK-K-VLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIIS  108 (311)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCS-E-EEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEE
T ss_pred             cCCcCEEEEECCCCCHHHHHHHHcCCC-E-EEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEE
Confidence            334589999999999999999998663 6 889998655443332       2889999999997 5664  498874

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.84  E-value=1.1e-05  Score=62.99  Aligned_cols=74  Identities=16%  Similarity=0.164  Sum_probs=55.2

Q ss_pred             HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-------CCCceEEeCCCCCCCCc
Q 037818          120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-------ILGVTHIGGDTFKSIPA  191 (199)
Q Consensus       120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-------~~ri~~~~gd~f~~~P~  191 (199)
                      ...+++.++ .+...+|||||||.|.++..++++++ .+ ++.+|+ ++.++.+++       ..++.+...|+.+ +|.
T Consensus        41 ~~~~~~~l~-l~~g~~VLDiGCG~G~~a~~~a~~~g-~~-v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~-~~~  116 (280)
T d2fk8a1          41 VDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERFD-VN-VIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-FAE  116 (280)
T ss_dssp             HHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHHC-CE-EEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-CCC
T ss_pred             HHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHhCc-ee-EEEecchHHHHHHHHHHHHhhccccchhhhhhhhhh-hcc
Confidence            356788887 88889999999999999999988886 58 999998 455555442       2678888787654 343


Q ss_pred             -ccEEEe
Q 037818          192 -ADAIFM  197 (199)
Q Consensus       192 -aD~~~l  197 (199)
                       -|.++.
T Consensus       117 ~fD~i~s  123 (280)
T d2fk8a1         117 PVDRIVS  123 (280)
T ss_dssp             CCSEEEE
T ss_pred             chhhhhH
Confidence             376653

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.83  E-value=1e-05  Score=63.20  Aligned_cols=73  Identities=15%  Similarity=0.151  Sum_probs=55.8

Q ss_pred             HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-------CCCceEEeCCCCCCCCc
Q 037818          120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-------ILGVTHIGGDTFKSIPA  191 (199)
Q Consensus       120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-------~~ri~~~~gd~f~~~P~  191 (199)
                      ...+++... .+...+|||||||.|.++..++++++ ++ ++.+++ |+.++.+++       .+++++..+|+-+ +|.
T Consensus        51 ~~~~~~~l~-l~~G~~VLDiGCG~G~~a~~~a~~~g-~~-v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~-~~~  126 (285)
T d1kpga_          51 IDLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYD-VN-VVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-FDE  126 (285)
T ss_dssp             HHHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHC-CE-EEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-CCC
T ss_pred             HHHHHHHcC-CCCCCEEEEecCcchHHHHHHHhcCC-cc-eEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhc-ccc
Confidence            356778887 78889999999999999999999995 78 999997 454554432       3899999999854 333


Q ss_pred             -ccEEE
Q 037818          192 -ADAIF  196 (199)
Q Consensus       192 -aD~~~  196 (199)
                       -|.++
T Consensus       127 ~fD~i~  132 (285)
T d1kpga_         127 PVDRIV  132 (285)
T ss_dssp             CCSEEE
T ss_pred             ccccee
Confidence             25443

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.83  E-value=1e-05  Score=66.18  Aligned_cols=77  Identities=14%  Similarity=0.277  Sum_probs=57.0

Q ss_pred             HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC---------------CCceE-Ee
Q 037818          120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI---------------LGVTH-IG  182 (199)
Q Consensus       120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~---------------~ri~~-~~  182 (199)
                      +..+++.++ .....+|||||||.|..+..+++.+|..+ ++++|+ |..++.|++.               ..+.+ ..
T Consensus       205 i~~Il~~l~-Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~-v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~  282 (406)
T d1u2za_         205 LSDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCAL-SFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK  282 (406)
T ss_dssp             HHHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSE-EEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred             HHHHHHHhC-CCCCCEEEeCCCCCcHHHHHHHHHcCCCe-EEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeee
Confidence            345667776 77778999999999999999999999888 999998 5556666531               23344 46


Q ss_pred             CCCCCC------CCcccEEEec
Q 037818          183 GDTFKS------IPAADAIFMK  198 (199)
Q Consensus       183 gd~f~~------~P~aD~~~l~  198 (199)
                      ++|++.      ++.+|++++.
T Consensus       283 ~~f~~~~~~d~~~~~adVV~in  304 (406)
T d1u2za_         283 KSFVDNNRVAELIPQCDVILVN  304 (406)
T ss_dssp             SCSTTCHHHHHHGGGCSEEEEC
T ss_pred             echhhccccccccccceEEEEe
Confidence            777752      4446888764

>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.82  E-value=2.6e-06  Score=56.79  Aligned_cols=48  Identities=25%  Similarity=0.279  Sum_probs=39.8

Q ss_pred             CcchhccccccccCC----CCCCHHHHHHHcCCCCCCC-cchHHHHHHHHhhCC
Q 037818            3 DNECREGGKKVRLAN----TPLSASQILTRILPSGDGD-AENLQRILRLLTSYG   51 (199)
Q Consensus         3 ~~~A~~lglf~~L~~----g~~t~~eLA~~~~~~~~~~-~~~l~rlL~~l~~~g   51 (199)
                      -+.|++|||+|.|..    +++|..|||.++... +|+ +..+.|+||+|++.|
T Consensus        24 Lk~AieLgI~DiI~~~G~~~~ls~~eia~~l~~~-~p~~~~~L~RilR~Las~~   76 (107)
T d1kyza1          24 LKSALELDLLEIIAKAGPGAQISPIEIASQLPTT-NPDAPVMLDRMLRLLACYI   76 (107)
T ss_dssp             HHHHHHTTHHHHHHTTCTTCCBCHHHHHHTSSCC-CTTHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHcCCCCCCCHHHHHHhcCCC-CCcchHHHHHHHHHHHhcC
Confidence            357999999999963    478999999999883 344 247999999999999

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.79  E-value=7.6e-06  Score=62.06  Aligned_cols=62  Identities=18%  Similarity=0.143  Sum_probs=50.5

Q ss_pred             hhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCC----CCCCceEEeCCCCCC
Q 037818          125 DGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAP----SILGVTHIGGDTFKS  188 (199)
Q Consensus       125 ~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~----~~~ri~~~~gd~f~~  188 (199)
                      +.++ .....+|||||||+|..+..+++..|+-+ ++.+|. |..++.++    ..+++.++-+|-..+
T Consensus        68 ~~l~-ikpG~~VLDlGcGsG~~~~~la~~~~~g~-V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~  134 (230)
T d1g8sa_          68 KVMP-IKRDSKILYLGASAGTTPSHVADIADKGI-VYAIEYAPRIMRELLDACAERENIIPILGDANKP  134 (230)
T ss_dssp             CCCC-CCTTCEEEEESCCSSHHHHHHHHHTTTSE-EEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCG
T ss_pred             HhCC-CCCCCEEEEeCEEcCHHHHHHHHhCCCCE-EEEEeCcHHHHHHHHHHHhhhcccceEEEeeccC
Confidence            3444 67778999999999999999999999998 999998 66665544    457888888888764

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=2e-05  Score=59.34  Aligned_cols=76  Identities=21%  Similarity=0.121  Sum_probs=57.4

Q ss_pred             HHhhhCC-CCCCcceEEEecCCccHHHHHHHHH-CCCCCeeeeccc-hHHHhcCCCC-----------CCceEEeCCCCC
Q 037818          122 SVLDGYN-GFKGVKQLVDVGGSAGDCLRMILQK-HRFICEGINFDL-PEVVGEAPSI-----------LGVTHIGGDTFK  187 (199)
Q Consensus       122 ~~~~~~~-~~~~~~~vvDvGGG~G~~~~~l~~~-~P~l~~~~v~Dl-p~v~~~a~~~-----------~ri~~~~gd~f~  187 (199)
                      .+++.+. ..+...+|||||||+|..+..+++. .|.-+ ++.+|. |+.++.|+++           .+++++.||.+.
T Consensus        65 ~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~-V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~  143 (224)
T d1i1na_          65 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGK-VIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM  143 (224)
T ss_dssp             HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCE-EEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG
T ss_pred             HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCce-EEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccc
Confidence            4555552 1566689999999999999888875 67888 999996 6777777542           689999999987


Q ss_pred             CCCc-c--cEEEec
Q 037818          188 SIPA-A--DAIFMK  198 (199)
Q Consensus       188 ~~P~-a--D~~~l~  198 (199)
                      ..|. +  |+|++.
T Consensus       144 ~~~~~~~fD~I~~~  157 (224)
T d1i1na_         144 GYAEEAPYDAIHVG  157 (224)
T ss_dssp             CCGGGCCEEEEEEC
T ss_pred             ccchhhhhhhhhhh
Confidence            5443 3  988764

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.76  E-value=1.5e-05  Score=62.48  Aligned_cols=74  Identities=16%  Similarity=0.081  Sum_probs=54.6

Q ss_pred             HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccch-HHHhcCCC-------CCCceEEeCCCCCCCCc
Q 037818          120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP-EVVGEAPS-------ILGVTHIGGDTFKSIPA  191 (199)
Q Consensus       120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp-~v~~~a~~-------~~ri~~~~gd~f~~~P~  191 (199)
                      ...+++... .+...+|||||||.|.++..++++++ .+ ++.+++. +.++.+++       .+++++...|+-.+-..
T Consensus        50 ~~~~~~~l~-l~~G~~VLDiGCG~G~~~~~~a~~~g-~~-v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~  126 (291)
T d1kpia_          50 RKLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VN-VIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEP  126 (291)
T ss_dssp             HHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CE-EEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCC
T ss_pred             HHHHHHhcC-CCCCCEEEEecCcchHHHHHHHHhcC-cc-eeeccchHHHHHHHHHHHHhhccchhhhhhhhcccccccc
Confidence            356778887 88889999999999999999999997 58 9999984 44444432       27889988887432112


Q ss_pred             ccEEE
Q 037818          192 ADAIF  196 (199)
Q Consensus       192 aD~~~  196 (199)
                      -|.|+
T Consensus       127 fD~i~  131 (291)
T d1kpia_         127 VDRIV  131 (291)
T ss_dssp             CSEEE
T ss_pred             cceEe
Confidence            37654

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.75  E-value=1e-05  Score=60.43  Aligned_cols=60  Identities=8%  Similarity=0.043  Sum_probs=51.5

Q ss_pred             hCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----CCCceEEeCCCCC
Q 037818          126 GYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----ILGVTHIGGDTFK  187 (199)
Q Consensus       126 ~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----~~ri~~~~gd~f~  187 (199)
                      .++ .....+|||||||+|..+..+++..|+-+ ++.+|. |..++.+++    .+++.++.+|...
T Consensus        51 ~l~-lkpg~~VLDlGcG~G~~~~~la~~v~~g~-V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~  115 (209)
T d1nt2a_          51 RLK-LRGDERVLYLGAASGTTVSHLADIVDEGI-IYAVEYSAKPFEKLLELVRERNNIIPLLFDASK  115 (209)
T ss_dssp             CCC-CCSSCEEEEETCTTSHHHHHHHHHTTTSE-EEEECCCHHHHHHHHHHHHHCSSEEEECSCTTC
T ss_pred             cCC-CCCCCEEEEeCCcCCHHHHHHHHhccCCe-EEEEeCCHHHHHHHHHHhhccCCceEEEeeccC
Confidence            355 77779999999999999999999999988 999998 777777654    4789999988876

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=97.70  E-value=1.9e-05  Score=59.51  Aligned_cols=73  Identities=14%  Similarity=0.193  Sum_probs=56.0

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----CCCceEEeCCCCCCCCc-c--c
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----ILGVTHIGGDTFKSIPA-A--D  193 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----~~ri~~~~gd~f~~~P~-a--D  193 (199)
                      .+++.++ .....+|||||||+|.++..+++...  + ++.+|. |+.++.|++    ..+++++.+|.+...|+ +  |
T Consensus        61 ~ml~~L~-l~~g~~VLdIG~GsGy~ta~La~l~~--~-V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD  136 (224)
T d1vbfa_          61 FMLDELD-LHKGQKVLEIGTGIGYYTALIAEIVD--K-VVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD  136 (224)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHSS--E-EEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred             HHHHHhh-hcccceEEEecCCCCHHHHHHHHHhc--c-cccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHH
Confidence            4567777 88889999999999999988887753  4 666774 666666653    48999999999876665 4  9


Q ss_pred             EEEec
Q 037818          194 AIFMK  198 (199)
Q Consensus       194 ~~~l~  198 (199)
                      ++++.
T Consensus       137 ~Iiv~  141 (224)
T d1vbfa_         137 RVVVW  141 (224)
T ss_dssp             EEEES
T ss_pred             HHHhh
Confidence            88763

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.68  E-value=1.4e-05  Score=61.57  Aligned_cols=66  Identities=18%  Similarity=-0.018  Sum_probs=53.5

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc--ccEEEec
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA--ADAIFMK  198 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~--aD~~~l~  198 (199)
                      ....+|||+|||+|.++..++++ +..+ ++.+|+ |..++.++++       ++|++..+|.++-.+.  +|.++|.
T Consensus       106 ~~g~~VlD~~aG~G~~~l~~a~~-~~~~-V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~  181 (260)
T d2frna1         106 KPDELVVDMFAGIGHLSLPIAVY-GKAK-VIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMG  181 (260)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHH-TCCE-EEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEEC
T ss_pred             CCccEEEECcceEcHHHHHHHHh-CCcE-EEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEEC
Confidence            45689999999999999999986 4568 999998 7777777642       7899999999874444  5988874

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.68  E-value=4.7e-06  Score=59.09  Aligned_cols=63  Identities=8%  Similarity=0.035  Sum_probs=50.5

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCC--CCc--ccEEEe
Q 037818          133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKS--IPA--ADAIFM  197 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~--~P~--aD~~~l  197 (199)
                      .++|||+|||+|.++.+.+.+... + ++.+|. |..++.++++       ++++++.+|.++.  .+.  .|++++
T Consensus        15 g~~vlDl~~GtG~~~iea~~rga~-~-v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~   89 (152)
T d2esra1          15 GGRVLDLFAGSGGLAIEAVSRGMS-A-AVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFL   89 (152)
T ss_dssp             SCEEEEETCTTCHHHHHHHHTTCC-E-EEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEE
T ss_pred             CCeEEEcCCccCHHHHHHHHhCcc-e-eeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEe
Confidence            479999999999999999988775 7 999998 7777766542       7899999998752  222  499987

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=97.67  E-value=1.4e-05  Score=62.03  Aligned_cols=65  Identities=17%  Similarity=0.169  Sum_probs=53.7

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCCCc----ccEEEec
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSIPA----ADAIFMK  198 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~P~----aD~~~l~  198 (199)
                      +..+++|+|||+|..+..++ .+|+.+ ++..|. |..++.|+++       +|+.+..+|++++.+.    .|+++-+
T Consensus       110 ~~~~vld~g~GsG~i~~~la-~~~~~~-v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsN  186 (271)
T d1nv8a_         110 GIKTVADIGTGSGAIGVSVA-KFSDAI-VFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSN  186 (271)
T ss_dssp             TCCEEEEESCTTSHHHHHHH-HHSSCE-EEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred             cccEEEEeeeeeehhhhhhh-hcccce-eeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEc
Confidence            34689999999999999987 579999 999997 7888888753       6899999999987654    3888753

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=2.1e-05  Score=59.10  Aligned_cols=65  Identities=8%  Similarity=-0.086  Sum_probs=48.7

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-----------------------CCCceEEeCCC
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-----------------------ILGVTHIGGDT  185 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-----------------------~~ri~~~~gd~  185 (199)
                      .....+|||+|||.|..+..|++.  ..+ +|.+|. |..|+.+++                       ..++++..+|+
T Consensus        43 ~~~~~rvLd~GCG~G~~a~~LA~~--G~~-V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~  119 (229)
T d2bzga1          43 GKSGLRVFFPLCGKAVEMKWFADR--GHS-VVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSI  119 (229)
T ss_dssp             TCCSCEEEETTCTTCTHHHHHHHT--TCE-EEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCG
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHhC--CCc-EEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcch
Confidence            456679999999999999999986  567 899998 556654321                       16899999999


Q ss_pred             CC--CCCc--ccEEEe
Q 037818          186 FK--SIPA--ADAIFM  197 (199)
Q Consensus       186 f~--~~P~--aD~~~l  197 (199)
                      ++  +.+.  .|+++-
T Consensus       120 ~~l~~~~~~~fd~i~~  135 (229)
T d2bzga1         120 FDLPRTNIGKFDMIWD  135 (229)
T ss_dssp             GGGGGSCCCCEEEEEE
T ss_pred             hhccccccCceeEEEE
Confidence            97  2333  277753

>d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.66  E-value=3.6e-06  Score=56.34  Aligned_cols=49  Identities=29%  Similarity=0.369  Sum_probs=38.4

Q ss_pred             CcchhccccccccCC-----CCCCHHHHHHHcCC-CCCCC-cchHHHHHHHHhhCC
Q 037818            3 DNECREGGKKVRLAN-----TPLSASQILTRILP-SGDGD-AENLQRILRLLTSYG   51 (199)
Q Consensus         3 ~~~A~~lglf~~L~~-----g~~t~~eLA~~~~~-~~~~~-~~~l~rlL~~l~~~g   51 (199)
                      -..|++|||+|.|..     +++|++|||.++.. ..+|+ +..|.|+||.|++.|
T Consensus        23 Lk~AieLgI~diI~~~G~~~~~ls~~ela~~lp~~~~~p~~~~~L~RiLRlLas~~   78 (110)
T d1fp1d1          23 LNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYS   78 (110)
T ss_dssp             HHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHcCCCCCCCCHHHHHHhCCCCCCCccHHHHHHHHHHHHHHcC
Confidence            357999999999963     24799999999875 11344 236999999999988

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=6.1e-05  Score=59.76  Aligned_cols=94  Identities=16%  Similarity=0.124  Sum_probs=68.2

Q ss_pred             CchhHHHHHHHHhccchhh----HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHH-CCCCCeeeeccc-hHHHhcCCC
Q 037818          101 MPEMNGLMRKAMSGVSVPF----ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQK-HRFICEGINFDL-PEVVGEAPS  174 (199)
Q Consensus       101 ~~~~~~~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~-~P~l~~~~v~Dl-p~v~~~a~~  174 (199)
                      .|.. ..|...|...++..    +..|+..++ .....+|||+|||+|.++..|+++ .|+-+ ++.+|. |+.++.|++
T Consensus        65 ~Pt~-~d~~~~~~r~tqiiypkD~~~Il~~l~-i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~-V~t~E~~~~~~~~A~~  141 (324)
T d2b25a1          65 RPAL-EDYVVLMKRGTAITFPKDINMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGR-VISFEVRKDHHDLAKK  141 (324)
T ss_dssp             CCCH-HHHHHHSCCSSCCCCHHHHHHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCE-EEEEESSHHHHHHHHH
T ss_pred             CCCH-HHHhhccCCCCcccccccHHHHHHHhC-CCCCCEEEEecccccHHHHHHHHHhCCCcE-EEEecCCHHHHHHHHH
Confidence            3443 45777787666654    345677777 777799999999999999999987 68888 999997 566655542


Q ss_pred             -----------------CCCceEEeCCCCCC---CCc--ccEEEe
Q 037818          175 -----------------ILGVTHIGGDTFKS---IPA--ADAIFM  197 (199)
Q Consensus       175 -----------------~~ri~~~~gd~f~~---~P~--aD~~~l  197 (199)
                                       .+++++..+|+-+.   ++.  .|.+++
T Consensus       142 n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~L  186 (324)
T d2b25a1         142 NYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVAL  186 (324)
T ss_dssp             HHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEE
T ss_pred             HHHHhhhhhhhhhhhccccceeEEecchhhcccccCCCCcceEee
Confidence                             26899999998752   444  388875

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=3.9e-05  Score=58.71  Aligned_cols=54  Identities=7%  Similarity=-0.049  Sum_probs=45.7

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCC
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDT  185 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~  185 (199)
                      +...+++|||+|+|..+..+++++|+++ ++..|. |..++.|+++       +|+.+...+.
T Consensus        60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~~-~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~  121 (250)
T d2h00a1          60 STLRRGIDIGTGASCIYPLLGATLNGWY-FLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQ  121 (250)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHHCCE-EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred             cccceEEEeCCCchHHHHHHHHhCCCcc-ccceecCHHHHHHHHHHHHHhCCCcceeeeeecc
Confidence            3446999999999999999999999999 999997 7888888753       7888876443

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=97.47  E-value=0.00013  Score=55.20  Aligned_cols=68  Identities=10%  Similarity=0.309  Sum_probs=51.7

Q ss_pred             HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcC----CCCCCceEEeCCCCC-CCCc
Q 037818          120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEA----PSILGVTHIGGDTFK-SIPA  191 (199)
Q Consensus       120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a----~~~~ri~~~~gd~f~-~~P~  191 (199)
                      +..+++..+ .....+||+||+|+|.+...|+++...+.   .+|. +..++..    ...++++++.||+++ ++|.
T Consensus        10 ~~~iv~~~~-~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~---avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~   83 (235)
T d1qama_          10 IDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRCNFVT---AIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPK   83 (235)
T ss_dssp             HHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHSSEEE---EECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCS
T ss_pred             HHHHHHhcC-CCCCCeEEEECCCchHHHHHHHhCcCceE---EEeeccchHHHHHHHhhcccchhhhhhhhhhccccc
Confidence            456777777 77889999999999999999999865544   5554 3333333    345899999999997 5665

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.43  E-value=7.3e-05  Score=55.87  Aligned_cols=74  Identities=27%  Similarity=0.277  Sum_probs=56.3

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC------CCCceEEeCCCCCCCCc-c-
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS------ILGVTHIGGDTFKSIPA-A-  192 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~------~~ri~~~~gd~f~~~P~-a-  192 (199)
                      .+++.++ .+...+|||||+|+|..+.-+++.. .-+ ++.+|. |+.++.+++      .++++++.||.++..|. + 
T Consensus        69 ~ml~~L~-l~~g~~VLeIGsGsGY~taila~l~-g~~-V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~p  145 (215)
T d1jg1a_          69 IMLEIAN-LKPGMNILEVGTGSGWNAALISEIV-KTD-VYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAP  145 (215)
T ss_dssp             HHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHH-CSC-EEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred             HHHHhhc-cCccceEEEecCCCChhHHHHHHhh-Cce-eEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCc
Confidence            4566777 7777899999999999998777654 344 656665 777777765      38999999999986554 3 


Q ss_pred             -cEEEec
Q 037818          193 -DAIFMK  198 (199)
Q Consensus       193 -D~~~l~  198 (199)
                       |+|++.
T Consensus       146 fD~Iiv~  152 (215)
T d1jg1a_         146 YDVIIVT  152 (215)
T ss_dssp             EEEEEEC
T ss_pred             ceeEEee
Confidence             888763

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.38  E-value=0.00014  Score=54.50  Aligned_cols=75  Identities=20%  Similarity=0.218  Sum_probs=55.6

Q ss_pred             HHhhhC--CCCCCcceEEEecCCccHHHHHHHHH------CCCCCeeeeccc-hHHHhcCCCC-----------CCceEE
Q 037818          122 SVLDGY--NGFKGVKQLVDVGGSAGDCLRMILQK------HRFICEGINFDL-PEVVGEAPSI-----------LGVTHI  181 (199)
Q Consensus       122 ~~~~~~--~~~~~~~~vvDvGGG~G~~~~~l~~~------~P~l~~~~v~Dl-p~v~~~a~~~-----------~ri~~~  181 (199)
                      .+++.+  + .....+|||||+|+|.++..+++.      ++..+ ++.+|. ++.++.++++           .+|++.
T Consensus        69 ~~l~~L~~~-l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~-V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~  146 (223)
T d1r18a_          69 FALEYLRDH-LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTR-IVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIV  146 (223)
T ss_dssp             HHHHHTTTT-CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCE-EEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHhhc-cCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccE-EEEEecCHHHHHHHHHhhhhcchhhcCccEEEEE
Confidence            455655  4 667789999999999988777664      46667 888886 6667766542           689999


Q ss_pred             eCCCCCCCCc-c--cEEEec
Q 037818          182 GGDTFKSIPA-A--DAIFMK  198 (199)
Q Consensus       182 ~gd~f~~~P~-a--D~~~l~  198 (199)
                      .+|..+..|. +  |+|++.
T Consensus       147 ~~d~~~~~~~~~~fD~Iiv~  166 (223)
T d1r18a_         147 EGDGRKGYPPNAPYNAIHVG  166 (223)
T ss_dssp             ESCGGGCCGGGCSEEEEEEC
T ss_pred             ecccccccccccceeeEEEE
Confidence            9999975444 3  988763

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=97.34  E-value=3.2e-05  Score=61.08  Aligned_cols=66  Identities=21%  Similarity=0.251  Sum_probs=54.2

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC-----------CCCceEEeCCCCC---CCCcc-cE
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS-----------ILGVTHIGGDTFK---SIPAA-DA  194 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~-----------~~ri~~~~gd~f~---~~P~a-D~  194 (199)
                      .+.++||.||||.|..+.++++..|..+ .+++|+ |.|++.+++           .+|++.+.+|.++   ..+.. |+
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~-v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv  154 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEK-AVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV  154 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCE-EEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcce-EEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence            4568999999999999999998888888 999997 788887763           3799999999986   23343 88


Q ss_pred             EEe
Q 037818          195 IFM  197 (199)
Q Consensus       195 ~~l  197 (199)
                      |++
T Consensus       155 Ii~  157 (312)
T d1uira_         155 VII  157 (312)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            875

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=97.33  E-value=8.8e-05  Score=56.52  Aligned_cols=69  Identities=14%  Similarity=0.268  Sum_probs=52.9

Q ss_pred             HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccch-HHHhcCCC----CCCceEEeCCCCC-CCCcc
Q 037818          120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP-EVVGEAPS----ILGVTHIGGDTFK-SIPAA  192 (199)
Q Consensus       120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp-~v~~~a~~----~~ri~~~~gd~f~-~~P~a  192 (199)
                      ...+++..+ .+...+||+||+|+|.+...|+++..  + .+.+|.. .-++.+++    .++++++.+|+.+ ++|..
T Consensus        18 i~kIv~~~~-~~~~d~VLEIGpG~G~LT~~L~~~~~--~-v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~   92 (245)
T d1yuba_          18 LNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKISK--Q-VTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNK   92 (245)
T ss_dssp             HHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHSS--E-EEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCS
T ss_pred             HHHHHHhcC-CCCCCeEEEECCCccHHHHHHHhhcC--c-eeEeeecccchhhhhhhhhhccchhhhhhhhhccccccc
Confidence            456778777 77889999999999999999999865  4 5667764 33444443    2789999999997 67753

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.31  E-value=7.3e-05  Score=58.06  Aligned_cols=55  Identities=13%  Similarity=0.049  Sum_probs=41.9

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC----------CCceEEeCCCCC
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI----------LGVTHIGGDTFK  187 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~----------~ri~~~~gd~f~  187 (199)
                      -.+.++|||||||+|.++..++++  ..+ ++.+|+ |..++.|++.          .+..+...|+..
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~--g~~-v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~  119 (292)
T d1xvaa_          54 QHGCHRVLDVACGTGVDSIMLVEE--GFS-VTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLT  119 (292)
T ss_dssp             HTTCCEEEESSCTTSHHHHHHHHT--TCE-EEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGG
T ss_pred             hcCCCEEEEecCCCcHHHHHHHHc--CCe-eeeccCchHHHHHHHHHHHhcccccccceeeeeeccccc
Confidence            345679999999999999999987  467 999998 5667766531          345666777763

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.17  E-value=0.00011  Score=56.98  Aligned_cols=66  Identities=21%  Similarity=0.251  Sum_probs=53.1

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----------CCCceEEeCCCCC---CCCcc-cEE
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----------ILGVTHIGGDTFK---SIPAA-DAI  195 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----------~~ri~~~~gd~f~---~~P~a-D~~  195 (199)
                      .+.++||-||||.|..++++++..|..+ .+++|+ |+|++.+++          .+|++.+.+|-+.   ..+.. |+|
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~-i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvI  152 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKK-ATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI  152 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSE-EEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcce-EEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEE
Confidence            4568999999999999999997777777 999997 788887753          3899999999875   23333 888


Q ss_pred             Ee
Q 037818          196 FM  197 (199)
Q Consensus       196 ~l  197 (199)
                      ++
T Consensus       153 i~  154 (274)
T d1iy9a_         153 MV  154 (274)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.14  E-value=8e-05  Score=58.26  Aligned_cols=66  Identities=18%  Similarity=0.235  Sum_probs=53.6

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----------CCCceEEeCCCCC---CCCcc-cEE
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----------ILGVTHIGGDTFK---SIPAA-DAI  195 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----------~~ri~~~~gd~f~---~~P~a-D~~  195 (199)
                      .+.++||-||||.|..++++++..|..+ ++++|+ |.|++.+++          .+|++.+.+|-++   ..+.. |+|
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~-i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  166 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEK-AILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVI  166 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSE-EEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCce-EEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEE
Confidence            4568999999999999999998777777 999997 788888764          3899999999885   23334 888


Q ss_pred             Ee
Q 037818          196 FM  197 (199)
Q Consensus       196 ~l  197 (199)
                      ++
T Consensus       167 i~  168 (295)
T d1inla_         167 II  168 (295)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=9.7e-05  Score=57.50  Aligned_cols=67  Identities=19%  Similarity=0.326  Sum_probs=54.1

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----------CCCceEEeCCCCC---CCCcc-cE
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----------ILGVTHIGGDTFK---SIPAA-DA  194 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----------~~ri~~~~gd~f~---~~P~a-D~  194 (199)
                      -...++||-||||.|..++++++..|..+ ++++|+ |.|++.+++          .+|++.+.+|-++   ..+.. |+
T Consensus        76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~-v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv  154 (285)
T d2o07a1          76 HPNPRKVLIIGGGDGGVLREVVKHPSVES-VVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDV  154 (285)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCE-EEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEE
T ss_pred             CcCcCeEEEeCCCchHHHHHHHHcCCcce-eeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCE
Confidence            35678999999999999999997777777 999997 888888864          3899999999764   33444 88


Q ss_pred             EEe
Q 037818          195 IFM  197 (199)
Q Consensus       195 ~~l  197 (199)
                      |++
T Consensus       155 Ii~  157 (285)
T d2o07a1         155 IIT  157 (285)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            875

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.94  E-value=0.00021  Score=55.24  Aligned_cols=65  Identities=23%  Similarity=0.280  Sum_probs=51.1

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----------------CCCceEEeCCCCCC--CCc
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----------------ILGVTHIGGDTFKS--IPA  191 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----------------~~ri~~~~gd~f~~--~P~  191 (199)
                      .+.++||-||||.|..+.++++ +|..+ ++++|+ |.|++.+++                .+|++++.+|-++-  ...
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~-~~~~~-v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~  148 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQ-HDVDE-VIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNR  148 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTT-SCCSE-EEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred             CCCceEEEecCCchHHHHHHHH-hCCce-EEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccC
Confidence            5668999999999999999986 67677 999997 888887752                37999999997742  122


Q ss_pred             c-cEEEe
Q 037818          192 A-DAIFM  197 (199)
Q Consensus       192 a-D~~~l  197 (199)
                      . |+|++
T Consensus       149 ~yDvIi~  155 (276)
T d1mjfa_         149 GFDVIIA  155 (276)
T ss_dssp             CEEEEEE
T ss_pred             CCCEEEE
Confidence            3 88875

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.89  E-value=0.00015  Score=56.98  Aligned_cols=66  Identities=21%  Similarity=0.286  Sum_probs=51.9

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----------CCCceEEeCCCCC---CCCcc-cEE
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----------ILGVTHIGGDTFK---SIPAA-DAI  195 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----------~~ri~~~~gd~f~---~~P~a-D~~  195 (199)
                      .+.++||-||||.|..++++++..|-.+ ++++|+ |.|++.+++          .+|++.+.+|-++   ..+.. |+|
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~-v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvI  183 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEK-VTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI  183 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCE-EEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcce-EEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEE
Confidence            4568999999999999999997666667 999997 788887764          2799999988875   22333 887


Q ss_pred             Ee
Q 037818          196 FM  197 (199)
Q Consensus       196 ~l  197 (199)
                      ++
T Consensus       184 I~  185 (312)
T d2b2ca1         184 IT  185 (312)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=96.85  E-value=0.00014  Score=52.82  Aligned_cols=62  Identities=10%  Similarity=0.041  Sum_probs=49.1

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCC---CCc-ccEEEe
Q 037818          134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKS---IPA-ADAIFM  197 (199)
Q Consensus       134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~---~P~-aD~~~l  197 (199)
                      .+|||++||+|.++.+.+.+... + ++.+|. +..++.++++      .+++++.+|.++-   ... .|++++
T Consensus        45 ~~vLDlfaGsG~~giealsrGa~-~-v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~  117 (183)
T d2fpoa1          45 AQCLDCFAGSGALGLEALSRYAA-G-ATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFV  117 (183)
T ss_dssp             CEEEETTCTTCHHHHHHHHTTCS-E-EEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEE
T ss_pred             hhhhhhhccccceeeeEEecCcc-e-eEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEE
Confidence            68999999999999999998876 6 889997 6677666642      6789999998852   222 399987

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.84  E-value=0.00025  Score=55.22  Aligned_cols=66  Identities=20%  Similarity=0.240  Sum_probs=53.3

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----------CCCceEEeCCCCC---CCCc-c-cE
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----------ILGVTHIGGDTFK---SIPA-A-DA  194 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----------~~ri~~~~gd~f~---~~P~-a-D~  194 (199)
                      .+.++||=||||.|..++++++..|--+ ++++|+ |+|++.+++          .+|++.+.+|-++   ..++ . |+
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~-i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDv  157 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQ-IDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA  157 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCE-EEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred             CCCcceEEecCCchHHHHHHHhccccee-eEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccE
Confidence            5678999999999999999998667667 999998 788888764          3899999999664   3444 3 88


Q ss_pred             EEe
Q 037818          195 IFM  197 (199)
Q Consensus       195 ~~l  197 (199)
                      |++
T Consensus       158 Ii~  160 (290)
T d1xj5a_         158 VIV  160 (290)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            875

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=96.60  E-value=7.3e-05  Score=53.77  Aligned_cols=65  Identities=14%  Similarity=0.093  Sum_probs=46.5

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCC---CC-c-ccEEE
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKS---IP-A-ADAIF  196 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~---~P-~-aD~~~  196 (199)
                      .....+|||+|||+|.++.+++.+.  .+ ++.+|. |..++.++++       +++....+|.|.+   .+ . .|+++
T Consensus        39 ~~~g~~vLDl~~G~G~~~i~a~~~g--a~-vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If  115 (171)
T d1ws6a1          39 YPRRGRFLDPFAGSGAVGLEAASEG--WE-AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAF  115 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHHHHHHTT--CE-EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEE
T ss_pred             ccCCCeEEEeccccchhhhhhhhcc--ch-hhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeE
Confidence            3455799999999999999988875  46 778897 7777777653       5666666665531   11 2 38887


Q ss_pred             e
Q 037818          197 M  197 (199)
Q Consensus       197 l  197 (199)
                      +
T Consensus       116 ~  116 (171)
T d1ws6a1         116 M  116 (171)
T ss_dssp             E
T ss_pred             E
Confidence            6

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.0011  Score=50.63  Aligned_cols=54  Identities=17%  Similarity=0.307  Sum_probs=33.7

Q ss_pred             HHHHhhhCCCCCCcceEEEecCCccHHHHHHHH----HCCCCC-eeeeccc-hHHHhcCC
Q 037818          120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQ----KHRFIC-EGINFDL-PEVVGEAP  173 (199)
Q Consensus       120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~----~~P~l~-~~~v~Dl-p~v~~~a~  173 (199)
                      .+.++..+...+..-+|||||||+|.++..+++    .+|... +.+.+|. +..++.++
T Consensus        28 l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~   87 (280)
T d1jqea_          28 LPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYK   87 (280)
T ss_dssp             HHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHH
T ss_pred             HHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHH
Confidence            344544442133445899999999998666554    567654 1578886 45555554

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.44  E-value=0.00049  Score=51.10  Aligned_cols=67  Identities=15%  Similarity=0.224  Sum_probs=52.1

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCC-------CCCceEEeCCCCCCCCc---------c
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPS-------ILGVTHIGGDTFKSIPA---------A  192 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~-------~~ri~~~~gd~f~~~P~---------a  192 (199)
                      .+.++||+||+|+|..+..++++.| +-+ ++.+|. |+..+.++.       .+||+++.||..+-+|.         -
T Consensus        55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~-v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~  133 (214)
T d2cl5a1          55 YSPSLVLELGAYCGYSAVRMARLLQPGAR-LLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL  133 (214)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTCCTTCE-EEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCE
T ss_pred             hCCCEEEEEccCchhHHHHHHHhCCCccE-EEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhccccccc
Confidence            4568999999999999999999876 467 999997 566666654       27899999998763332         2


Q ss_pred             cEEEec
Q 037818          193 DAIFMK  198 (199)
Q Consensus       193 D~~~l~  198 (199)
                      |++++-
T Consensus       134 D~ifiD  139 (214)
T d2cl5a1         134 DMVFLD  139 (214)
T ss_dssp             EEEEEC
T ss_pred             ceeeec
Confidence            887763

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.30  E-value=0.00049  Score=54.26  Aligned_cols=65  Identities=17%  Similarity=0.144  Sum_probs=51.5

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCC---CC---c-ccEE
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKS---IP---A-ADAI  195 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~---~P---~-aD~~  195 (199)
                      +..++|||++||+|.++..+++.... + ++.+|+ |..++.++++       ++++++.+|.|+.   ++   . -|+|
T Consensus       144 ~~g~~VLDl~~g~G~~si~~a~~ga~-~-V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~V  221 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFAIHAAIAGAD-E-VIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIV  221 (324)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTCS-E-EEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCCeeecccCcccchhhhhhhcCCc-E-EEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCch
Confidence            45689999999999999999988643 6 999998 7777877653       6899999999863   22   1 3888


Q ss_pred             Ee
Q 037818          196 FM  197 (199)
Q Consensus       196 ~l  197 (199)
                      ++
T Consensus       222 i~  223 (324)
T d2as0a2         222 VL  223 (324)
T ss_dssp             EE
T ss_pred             hc
Confidence            86

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.23  E-value=0.0012  Score=49.44  Aligned_cols=57  Identities=19%  Similarity=0.142  Sum_probs=44.8

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHC-CCCCeeeeccc-hHHHhcCC----CCCCceEEeCCCCC
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKH-RFICEGINFDL-PEVVGEAP----SILGVTHIGGDTFK  187 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~~v~Dl-p~v~~~a~----~~~ri~~~~gd~f~  187 (199)
                      .....+|||+|||+|.++..+++.. |+=+ ++.+|. |..++.++    ....+..+.+|--.
T Consensus        71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~-V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~  133 (227)
T d1g8aa_          71 IKPGKSVLYLGIASGTTASHVSDIVGWEGK-IFGIEFSPRVLRELVPIVEERRNIVPILGDATK  133 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHSSCTTEEEEECCTTC
T ss_pred             cCCCCEEEEeccCCCHHHHHHHHHhCCCCE-EEEEeCcHHHHHHHHHHHHhcCCceEEEEECCC
Confidence            6677899999999999999999986 8888 999997 55555544    34667777777653

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.0065  Score=46.64  Aligned_cols=72  Identities=19%  Similarity=0.339  Sum_probs=50.5

Q ss_pred             HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc--hHHHh-cCCC---CCCceEEeCCCCC-CCCcc
Q 037818          120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL--PEVVG-EAPS---ILGVTHIGGDTFK-SIPAA  192 (199)
Q Consensus       120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl--p~v~~-~a~~---~~ri~~~~gd~f~-~~P~a  192 (199)
                      +..+++..+ ......|++||.|.|.+...|+++.+.+. ++=.|.  -+.+. ....   .++++.+.+|+++ ++|..
T Consensus        10 ~~kIv~~~~-~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~-aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~~~   87 (278)
T d1zq9a1          10 INSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAKKVV-ACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFF   87 (278)
T ss_dssp             HHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSSEEE-EEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCCC
T ss_pred             HHHHHHHhC-CCCCCEEEEECCCchHHHHHHHhcCCcEE-EEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhhhh
Confidence            456677766 66678999999999999999999987555 544442  12222 2222   2789999999997 56654


Q ss_pred             c
Q 037818          193 D  193 (199)
Q Consensus       193 D  193 (199)
                      +
T Consensus        88 ~   88 (278)
T d1zq9a1          88 D   88 (278)
T ss_dssp             S
T ss_pred             h
Confidence            3

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.06  E-value=0.012  Score=42.66  Aligned_cols=74  Identities=12%  Similarity=0.016  Sum_probs=49.7

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccchHHHhcCCCCCCceEEeCCCCCCCCc--ccEEEec
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLPEVVGEAPSILGVTHIGGDTFKSIPA--ADAIFMK  198 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp~v~~~a~~~~ri~~~~gd~f~~~P~--aD~~~l~  198 (199)
                      -+++... -....+|+|.|||+|.++.++.++++.......+|.-+....  ...+.....+|++...+.  .|+++.+
T Consensus        10 ~m~~l~~-~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~--~~~~~~~~~~~~~~~~~~~~fd~ii~n   85 (223)
T d2ih2a1          10 FMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD--LPPWAEGILADFLLWEPGEAFDLILGN   85 (223)
T ss_dssp             HHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC--CCTTEEEEESCGGGCCCSSCEEEEEEC
T ss_pred             HHHHhcC-CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHh--hcccceeeeeehhccccccccceeccc
Confidence            3445554 455679999999999999999998887654788887433211  123457778888864332  3777653

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=96.01  E-value=0.0081  Score=43.01  Aligned_cols=61  Identities=23%  Similarity=0.243  Sum_probs=47.3

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCC-CCeeeeccchHHHhcCCCCCCceEEeCCCCC
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRF-ICEGINFDLPEVVGEAPSILGVTHIGGDTFK  187 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~~v~Dlp~v~~~a~~~~ri~~~~gd~f~  187 (199)
                      .+-+.|+.+.+..+|||||++.|.|+.-+.+..+. -+ ++.+|+-.    ....+.+.++.||+.+
T Consensus        12 EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~-v~~vDl~~----~~~i~~~~~~~~d~~~   73 (180)
T d1ej0a_          12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGR-IIACDLLP----MDPIVGVDFLQGDFRD   73 (180)
T ss_dssp             HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCE-EEEEESSC----CCCCTTEEEEESCTTS
T ss_pred             HHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccce-EEEeeccc----ccccCCceEeeccccc
Confidence            56667776678889999999999999988876555 55 88888744    2345788888999875

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=95.87  E-value=0.002  Score=48.89  Aligned_cols=64  Identities=13%  Similarity=0.124  Sum_probs=47.2

Q ss_pred             HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC----CCCceEEeCCCCC
Q 037818          120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS----ILGVTHIGGDTFK  187 (199)
Q Consensus       120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~----~~ri~~~~gd~f~  187 (199)
                      +..+++..+ ......||+||+|.|.+...|+++..+   .+.+|. +.-++..++    .++++.+.+|+++
T Consensus        10 ~~~Iv~~~~-~~~~d~vlEIGpG~G~LT~~Ll~~~~~---v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~   78 (252)
T d1qyra_          10 IDSIVSAIN-PQKGQAMVEIGPGLAALTEPVGERLDQ---LTVIELDRDLAARLQTHPFLGPKLTIYQQDAMT   78 (252)
T ss_dssp             HHHHHHHHC-CCTTCCEEEECCTTTTTHHHHHTTCSC---EEEECCCHHHHHHHHTCTTTGGGEEEECSCGGG
T ss_pred             HHHHHHhcC-CCCCCEEEEECCCchHHHHHHHccCCc---eEEEEeccchhHHHHHHhhhccchhHHhhhhhh
Confidence            445667666 677789999999999999999998654   445555 333333322    3789999999986

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.85  E-value=0.0011  Score=51.85  Aligned_cols=65  Identities=17%  Similarity=0.116  Sum_probs=50.9

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC--------CCceEEeCCCCCCCC------c-cc
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI--------LGVTHIGGDTFKSIP------A-AD  193 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~--------~ri~~~~gd~f~~~P------~-aD  193 (199)
                      .++..+|||+.||+|.++..+++..  .+ +|.+|. +..++.|+++        .+++++.+|.|+-+.      . -|
T Consensus       130 ~~~~~rVLdlf~~tG~~sl~aa~~G--A~-V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD  206 (309)
T d2igta1         130 ADRPLKVLNLFGYTGVASLVAAAAG--AE-VTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYD  206 (309)
T ss_dssp             SSSCCEEEEETCTTCHHHHHHHHTT--CE-EEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBS
T ss_pred             ccCCCeEEEecCCCcHHHHHHHhCC--Ce-EEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCC
Confidence            4556899999999999999998764  47 889997 6777777753        479999999986321      2 38


Q ss_pred             EEEe
Q 037818          194 AIFM  197 (199)
Q Consensus       194 ~~~l  197 (199)
                      +|++
T Consensus       207 ~Iil  210 (309)
T d2igta1         207 IILT  210 (309)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9887

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.77  E-value=0.00081  Score=48.57  Aligned_cols=64  Identities=8%  Similarity=-0.043  Sum_probs=49.3

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC-------CCceEEeCCCCCCC------Cc-ccEEE
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI-------LGVTHIGGDTFKSI------PA-ADAIF  196 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~-------~ri~~~~gd~f~~~------P~-aD~~~  196 (199)
                      ...+|||+.+|+|.++.+.+.+... + ++.+|. +.+++.++++       +++++..+|.++.+      .. .|+++
T Consensus        41 ~~~~vLDlfaGsG~~g~ea~srGa~-~-v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIf  118 (182)
T d2fhpa1          41 DGGMALDLYSGSGGLAIEAVSRGMD-K-SICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL  118 (182)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTTCS-E-EEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCEEEEcccccccccceeeecchh-H-HHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEE
Confidence            3479999999999999999998765 5 888886 6667666642       68999999987521      11 38888


Q ss_pred             e
Q 037818          197 M  197 (199)
Q Consensus       197 l  197 (199)
                      +
T Consensus       119 l  119 (182)
T d2fhpa1         119 L  119 (182)
T ss_dssp             E
T ss_pred             e
Confidence            6

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.0046  Score=45.82  Aligned_cols=68  Identities=7%  Similarity=-0.007  Sum_probs=52.4

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCC-CCCeeeeccc-hHHHhcCCC-------CCCceEEeCCCCCCC--------Cc-
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHR-FICEGINFDL-PEVVGEAPS-------ILGVTHIGGDTFKSI--------PA-  191 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P-~l~~~~v~Dl-p~v~~~a~~-------~~ri~~~~gd~f~~~--------P~-  191 (199)
                      ..+.++||+||+++|.-+..++++-| +-+ .+.+|. |+..+.|++       .++|+++.||..+.+        +. 
T Consensus        57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g~-i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~  135 (219)
T d2avda1          57 LIQAKKALDLGTFTGYSALALALALPADGR-VVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGT  135 (219)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHTTSCTTCE-EEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTC
T ss_pred             ccCCCeEEEEechhhHHHHHHHHhCCCCce-EEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCC
Confidence            34678999999999999999999987 566 888886 566666664       389999999976522        22 


Q ss_pred             ccEEEec
Q 037818          192 ADAIFMK  198 (199)
Q Consensus       192 aD~~~l~  198 (199)
                      -|++++.
T Consensus       136 fD~ifiD  142 (219)
T d2avda1         136 FDVAVVD  142 (219)
T ss_dssp             EEEEEEC
T ss_pred             ccEEEEe
Confidence            3888764

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.001  Score=49.81  Aligned_cols=41  Identities=12%  Similarity=-0.074  Sum_probs=30.1

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCC
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAP  173 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~  173 (199)
                      .+..+|||||||+|.++..+++... -+ ++.+|+ |..++.++
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~-~~-v~giD~S~~~i~~a~   91 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSF-QD-ITLSDFTDRNREELE   91 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTE-EE-EEEEESCHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhcccc-Cc-EEEecCCHHHHHHHH
Confidence            4557999999999998766655432 25 899997 56666654

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.34  E-value=0.0088  Score=42.92  Aligned_cols=64  Identities=25%  Similarity=0.239  Sum_probs=50.0

Q ss_pred             HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC--CCCceEEeCCCCC
Q 037818          120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS--ILGVTHIGGDTFK  187 (199)
Q Consensus       120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~--~~ri~~~~gd~f~  187 (199)
                      ...+++.+. -.....+||...|.|.++.++++++  .+ ++.+|. |+++..++.  .+|++++.++|-+
T Consensus         7 l~Evl~~l~-~~~g~~~vD~T~G~GGhs~~iL~~~--~~-viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~   73 (182)
T d1wg8a2           7 YQEALDLLA-VRPGGVYVDATLGGAGHARGILERG--GR-VIGLDQDPEAVARAKGLHLPGLTVVQGNFRH   73 (182)
T ss_dssp             HHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHTT--CE-EEEEESCHHHHHHHHHTCCTTEEEEESCGGG
T ss_pred             HHHHHHhcC-CCCCCEEEEeCCCCcHHHHHHhccc--Cc-EEEEhhhhhHHHHHhhccccceeEeehHHHH
Confidence            345556554 4556799999999999999999974  57 899997 777777664  4899999888764

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=95.30  E-value=0.0068  Score=47.21  Aligned_cols=67  Identities=12%  Similarity=0.150  Sum_probs=49.7

Q ss_pred             CCcceEEEecCCccHHHHHHHHH-----CCCCCeeeeccc-hHHHhcCCC-----CCCceEEeCCCCCCCCc--ccEEEe
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQK-----HRFICEGINFDL-PEVVGEAPS-----ILGVTHIGGDTFKSIPA--ADAIFM  197 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~-----~P~l~~~~v~Dl-p~v~~~a~~-----~~ri~~~~gd~f~~~P~--aD~~~l  197 (199)
                      ....+|+|.+||+|.++.++.++     .++.+ .+.+|. |..+..|+.     .....+..+|.+...+.  .|+++.
T Consensus       116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~-~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~vi~  194 (328)
T d2f8la1         116 KKNVSILDPACGTANLLTTVINQLELKGDVDVH-ASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVIS  194 (328)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEE-EEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEE
T ss_pred             CCCCEEEeCCCCcchhHHHHHHHHHhccCccce-EEEecccHHHHHHHHHHHHHhhhhhhhhcccccccccccccccccc
Confidence            44579999999999999998764     34556 788897 566666653     26778888998875444  499886


Q ss_pred             c
Q 037818          198 K  198 (199)
Q Consensus       198 ~  198 (199)
                      +
T Consensus       195 N  195 (328)
T d2f8la1         195 D  195 (328)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=95.01  E-value=0.011  Score=46.56  Aligned_cols=65  Identities=11%  Similarity=0.152  Sum_probs=49.5

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCCCCc-------ccEE
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKSIPA-------ADAI  195 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~~P~-------aD~~  195 (199)
                      ..+..+|+|+-||.|.++..|+++.-  + ++.+|. ++.++.|+++      .+++|+.+|..+.++.       .|++
T Consensus       210 ~~~~~~vlDLycG~G~fsl~La~~~~--~-V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~v  286 (358)
T d1uwva2         210 VQPEDRVLDLFCGMGNFTLPLATQAA--S-VVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKV  286 (358)
T ss_dssp             CCTTCEEEEESCTTTTTHHHHHTTSS--E-EEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEE
T ss_pred             cCCCceEEEecccccccchhcccccc--E-EEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceE
Confidence            45668999999999999999998654  3 667775 6777777653      7899999998864322       2888


Q ss_pred             Ee
Q 037818          196 FM  197 (199)
Q Consensus       196 ~l  197 (199)
                      ++
T Consensus       287 il  288 (358)
T d1uwva2         287 LL  288 (358)
T ss_dssp             EE
T ss_pred             Ee
Confidence            76

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=94.98  E-value=0.0027  Score=47.35  Aligned_cols=67  Identities=15%  Similarity=0.076  Sum_probs=52.4

Q ss_pred             CCcceEEEecCCccHHHHHHHHHCCC-CCeeeeccc-hHHHhcCCC-------CCCceEEeCCCCCCCC---------c-
Q 037818          131 KGVKQLVDVGGSAGDCLRMILQKHRF-ICEGINFDL-PEVVGEAPS-------ILGVTHIGGDTFKSIP---------A-  191 (199)
Q Consensus       131 ~~~~~vvDvGGG~G~~~~~l~~~~P~-l~~~~v~Dl-p~v~~~a~~-------~~ri~~~~gd~f~~~P---------~-  191 (199)
                      .+.++||+||.+.|.-+..++++.|. -+ .+.+|. |+.++.|++       .+||+++.||..+-+|         . 
T Consensus        58 ~~~k~iLEiGT~~GyStl~la~al~~~g~-v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~  136 (227)
T d1susa1          58 INAKNTMEIGVYTGYSLLATALAIPEDGK-ILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS  136 (227)
T ss_dssp             HTCCEEEEECCGGGHHHHHHHHHSCTTCE-EEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTC
T ss_pred             cCCCcEEEecchhhhhHHHHHhhCCCCcE-EEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCc
Confidence            46789999999999999999999984 55 888886 666666664       2789999999875332         1 


Q ss_pred             ccEEEec
Q 037818          192 ADAIFMK  198 (199)
Q Consensus       192 aD~~~l~  198 (199)
                      -|++++-
T Consensus       137 fD~iFiD  143 (227)
T d1susa1         137 YDFIFVD  143 (227)
T ss_dssp             BSEEEEC
T ss_pred             eeEEEec
Confidence            3888863

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=94.83  E-value=0.0031  Score=49.35  Aligned_cols=63  Identities=17%  Similarity=0.153  Sum_probs=48.5

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC------CCceEEeCCCCCC---CC---c-ccEEEe
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI------LGVTHIGGDTFKS---IP---A-ADAIFM  197 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~------~ri~~~~gd~f~~---~P---~-aD~~~l  197 (199)
                      ..++|||++||+|.++.++++.  ..+ ++.+|. |..++.++++      ++++++.+|.|+.   ++   . .|+|++
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g--~~~-V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~  221 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALG--FRE-VVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVL  221 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEE-EEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             CCCeeeccCCCCcHHHHHHHhc--CCc-EEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEE
Confidence            3589999999999999998864  335 888997 6777777653      7899999999862   22   1 388886

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=94.79  E-value=0.0036  Score=49.04  Aligned_cols=66  Identities=11%  Similarity=0.006  Sum_probs=48.6

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCCC--------CCceEEeCCCCCCCC------c-cc
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPSI--------LGVTHIGGDTFKSIP------A-AD  193 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~~--------~ri~~~~gd~f~~~P------~-aD  193 (199)
                      ....++|||+.||+|.++..+++... -+ ++.+|. +..++.++++        .+++++.+|.|+.++      . -|
T Consensus       142 ~~~g~~VLdlf~~~G~~sl~aa~~ga-~~-V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD  219 (317)
T d2b78a2         142 SAAGKTVLNLFSYTAAFSVAAAMGGA-MA-TTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYD  219 (317)
T ss_dssp             TTBTCEEEEETCTTTHHHHHHHHTTB-SE-EEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             hhCCCceeecCCCCcHHHHHHHhCCC-ce-EEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCC
Confidence            45568999999999999988776432 34 778897 5667666542        589999999986322      2 28


Q ss_pred             EEEe
Q 037818          194 AIFM  197 (199)
Q Consensus       194 ~~~l  197 (199)
                      +|++
T Consensus       220 ~Ii~  223 (317)
T d2b78a2         220 IIII  223 (317)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8886

>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator IclR, N-terminal domain
domain: Transcriptional regulator IclR, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.25  E-value=0.0051  Score=37.57  Aligned_cols=38  Identities=16%  Similarity=0.089  Sum_probs=32.1

Q ss_pred             ccccccC--CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           10 GKKVRLA--NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        10 glf~~L~--~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      .|.+.+.  ++|.|+.|||+++|+  ++.  .+.|+|..|+..|
T Consensus         9 ~IL~~~a~~~~~~s~~eia~~~~~--~~s--t~~rll~tL~~~g   48 (75)
T d1mkma1           9 EILDFIVKNPGDVSVSEIAEKFNM--SVS--NAYKYMVVLEEKG   48 (75)
T ss_dssp             HHHHHHHHCSSCBCHHHHHHHTTC--CHH--HHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            3556664  378999999999999  665  8999999999999

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.98  E-value=0.0049  Score=46.67  Aligned_cols=42  Identities=14%  Similarity=-0.060  Sum_probs=28.8

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCC
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAP  173 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~  173 (199)
                      ..+..+|||||||+|.+....+..+.. + ++..|. |..++.++
T Consensus        52 ~~~g~~vLDiGcG~g~~~~~~~~~~~~-~-v~~~D~S~~~i~~~~   94 (263)
T d2g72a1          52 EVSGRTLIDIGSGPTVYQLLSACSHFE-D-ITMTDFLEVNRQELG   94 (263)
T ss_dssp             CSCCSEEEEETCTTCCGGGTTGGGGCS-E-EEEECSCHHHHHHHH
T ss_pred             CCCCcEEEEeccCCCHHHHHHhcccCC-e-EEEEeCCHHHHHHHH
Confidence            345689999999999876544444433 5 888997 55555443

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=93.42  E-value=0.071  Score=39.90  Aligned_cols=74  Identities=14%  Similarity=-0.014  Sum_probs=43.3

Q ss_pred             HHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCCCCeeeecc----chHHHhcCCCC--CCceEEeCCCCCCCCc--cc
Q 037818          122 SVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFD----LPEVVGEAPSI--LGVTHIGGDTFKSIPA--AD  193 (199)
Q Consensus       122 ~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~D----lp~v~~~a~~~--~ri~~~~gd~f~~~P~--aD  193 (199)
                      .+.+.+- +....+|||+|||.|.++.-+++..+..+ +..++    +.+.--....+  +-+++..++-+...|.  +|
T Consensus        57 ~~~~~~~-~~~~~~vvDlG~~pGgws~~~a~~~~v~~-V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l~~~~~D  134 (257)
T d2p41a1          57 WFVERNL-VTPEGKVVDLGCGRGGWSYYCGGLKNVRE-VKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCD  134 (257)
T ss_dssp             HHHHTTS-SCCCEEEEEETCTTSHHHHHHHTSTTEEE-EEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCS
T ss_pred             HHHHhcC-ccCCCeEEEecCCCChHHHHHHhhcCCCc-eeEEEecCccccCCccccccccccccchhhhhHHhcCCCcCC
Confidence            4445553 66667999999999999999998876555 44333    32110001111  3356665555543333  47


Q ss_pred             EEEe
Q 037818          194 AIFM  197 (199)
Q Consensus       194 ~~~l  197 (199)
                      +++.
T Consensus       135 ~vlc  138 (257)
T d2p41a1         135 TLLC  138 (257)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7763

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=93.30  E-value=0.11  Score=37.67  Aligned_cols=64  Identities=13%  Similarity=0.021  Sum_probs=46.8

Q ss_pred             cceEEEecCCccHHHHHHHHHCCCCCeeeeccch--------HHHhcCCCCCCceEEeCCCCCCCC--cccEEEec
Q 037818          133 VKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP--------EVVGEAPSILGVTHIGGDTFKSIP--AADAIFMK  198 (199)
Q Consensus       133 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp--------~v~~~a~~~~ri~~~~gd~f~~~P--~aD~~~l~  198 (199)
                      ..+++|||.|.|.=+.-++-.+|+++ .+++|.-        +++... ..++++.+.+...+-.+  ..|+++.|
T Consensus        66 ~~~ilDiGsGaG~PGi~laI~~p~~~-~~Lves~~KK~~FL~~~~~~L-~L~nv~v~~~R~E~~~~~~~fD~V~sR  139 (207)
T d1jsxa_          66 GERFIDVGTGPGLPGIPLSIVRPEAH-FTLLDSLGKRVRFLRQVQHEL-KLENIEPVQSRVEEFPSEPPFDGVISR  139 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSE-EEEEESCHHHHHHHHHHHHHT-TCSSEEEEECCTTTSCCCSCEEEEECS
T ss_pred             CCceeeeeccCCceeeehhhhcccce-EEEEecchHHHHHHHHHHHHc-CCcceeeeccchhhhccccccceehhh
Confidence            46899999999998888888999999 9999962        222221 13678888877766323  24887754

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=92.74  E-value=0.039  Score=41.13  Aligned_cols=35  Identities=26%  Similarity=0.170  Sum_probs=31.4

Q ss_pred             CCCcceEEEecCCccHHHHHHHHHCCCCCeeeeccc
Q 037818          130 FKGVKQLVDVGGSAGDCLRMILQKHRFICEGINFDL  165 (199)
Q Consensus       130 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl  165 (199)
                      +....+++|||.|.|.=++-++=.+|+++ .+++|.
T Consensus        68 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~-v~Lves  102 (239)
T d1xdza_          68 FNQVNTICDVGAGAGFPSLPIKICFPHLH-VTIVDS  102 (239)
T ss_dssp             GGGCCEEEEECSSSCTTHHHHHHHCTTCE-EEEEES
T ss_pred             ccCCCeEEeecCCCchHHHHHHHhCCCcc-ceeecc
Confidence            55668999999999998888888899999 999995

>d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: N-acetylglucosamine kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.62  E-value=0.012  Score=34.42  Aligned_cols=37  Identities=14%  Similarity=0.247  Sum_probs=31.0

Q ss_pred             cccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           11 KKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        11 lf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      |+..|.++|+|-.|||+.+|+  +..  .+.++++-|...|
T Consensus         4 Il~~i~~~pisr~eLa~~~gl--s~~--TVs~~v~~L~~~G   40 (62)
T d2hoea1           4 ILKRIMKSPVSRVELAEELGL--TKT--TVGEIAKIFLEKG   40 (62)
T ss_dssp             SHHHHHHSCBCHHHHHHHHTC--CHH--HHHHHHHHHHHHT
T ss_pred             HHHHHHHCCcCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            455666789999999999999  655  8899999998877

>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: Transcriptional regulator VC2007 N-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=91.92  E-value=0.02  Score=34.19  Aligned_cols=37  Identities=14%  Similarity=0.082  Sum_probs=31.1

Q ss_pred             cccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           11 KKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        11 lf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      |+..|.. +++|..|||+.+|+  ++.  .+.++++-|...|
T Consensus        11 Il~~l~~~g~~sr~eLa~~~gl--S~~--Tv~~~l~~L~~~G   48 (71)
T d1z05a1          11 VYKLIDQKGPISRIDLSKESEL--APA--SITKITRELIDAH   48 (71)
T ss_dssp             HHHHHHHHCSBCHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCcCHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence            5555653 89999999999999  665  8999999999887

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.07  E-value=0.19  Score=38.83  Aligned_cols=55  Identities=7%  Similarity=-0.066  Sum_probs=39.8

Q ss_pred             CcceEEEecCCccHHHHHHHHHCCCCCeeeeccch----HHHhcCCCCCCceEEeCCCCC
Q 037818          132 GVKQLVDVGGSAGDCLRMILQKHRFICEGINFDLP----EVVGEAPSILGVTHIGGDTFK  187 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dlp----~v~~~a~~~~ri~~~~gd~f~  187 (199)
                      ....|||||.|.|.+..+|+++.---+ .++++..    +.+..-...+|++.+.+|++.
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~-v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~  101 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQ-YSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD  101 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSE-EEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence            456899999999999999998742235 7777753    222222235889999999984

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.65  E-value=0.21  Score=35.43  Aligned_cols=67  Identities=19%  Similarity=0.115  Sum_probs=42.8

Q ss_pred             CcceEEEecCCccH----HHHHHHHHCC----CCCeeeeccc-hHHHhcCCCC---------------------------
Q 037818          132 GVKQLVDVGGSAGD----CLRMILQKHR----FICEGINFDL-PEVVGEAPSI---------------------------  175 (199)
Q Consensus       132 ~~~~vvDvGGG~G~----~~~~l~~~~P----~l~~~~v~Dl-p~v~~~a~~~---------------------------  175 (199)
                      +.-+|+++|||+|.    +++.+.+..+    +++ .+..|. +..++.|++.                           
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~-I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~  102 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWK-VFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  102 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEE-EEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceE-EEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence            34689999999998    4444554422    334 666676 5556554310                           


Q ss_pred             ----------CCceEEeCCCCCCC--Cc-c-cEEEecC
Q 037818          176 ----------LGVTHIGGDTFKSI--PA-A-DAIFMKW  199 (199)
Q Consensus       176 ----------~ri~~~~gd~f~~~--P~-a-D~~~l~~  199 (199)
                                .++.+..++...+.  |. . |+|+++|
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRN  140 (193)
T d1af7a2         103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRN  140 (193)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECS
T ss_pred             ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeeh
Confidence                      45678888888632  22 3 9999876

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=90.37  E-value=0.071  Score=37.76  Aligned_cols=62  Identities=15%  Similarity=0.124  Sum_probs=43.9

Q ss_pred             ceEEEecCCccHHHHHHHHHCCCCCeeeeccc-hHHHhcCCC--------CCCceEEeCCCCC---C---CCcccEEEe
Q 037818          134 KQLVDVGGSAGDCLRMILQKHRFICEGINFDL-PEVVGEAPS--------ILGVTHIGGDTFK---S---IPAADAIFM  197 (199)
Q Consensus       134 ~~vvDvGGG~G~~~~~l~~~~P~l~~~~v~Dl-p~v~~~a~~--------~~ri~~~~gd~f~---~---~P~aD~~~l  197 (199)
                      .+|||+-+|+|.++.+.+.+-.. + ++.+|. +..++..++        ....+....|.++   .   .+..|+|++
T Consensus        45 ~~vLDlFaGsG~~glEalSRGA~-~-v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl  121 (183)
T d2ifta1          45 SECLDGFAGSGSLGFEALSRQAK-K-VTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL  121 (183)
T ss_dssp             CEEEETTCTTCHHHHHHHHTTCS-E-EEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred             ceEeecccCccceeeeeeeecce-e-eEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence            58999999999999999998865 6 888886 445444443        1356667776553   1   222499987

>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Biotin repressor-like
domain: Biotin repressor, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.12  E-value=0.075  Score=30.88  Aligned_cols=42  Identities=17%  Similarity=0.083  Sum_probs=33.7

Q ss_pred             hhccccccccCC-CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            6 CREGGKKVRLAN-TPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         6 A~~lglf~~L~~-g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      -.++-+...|.+ +..|.+|||+.+|+  +..  .+.+-+..|...|
T Consensus         5 ~~~~~iL~~L~~~~~~s~~eLa~~l~v--S~~--ti~r~i~~L~~~G   47 (63)
T d1biaa1           5 TVPLKLIALLANGEFHSGEQLGETLGM--SRA--AINKHIQTLRDWG   47 (63)
T ss_dssp             HHHHHHHHHHTTSSCBCHHHHHHHHTS--CHH--HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCCcCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            345567778876 67999999999999  655  7888888888877

>d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Hypothetical protein PH1932
domain: Hypothetical protein PH1932
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=89.74  E-value=0.065  Score=38.06  Aligned_cols=40  Identities=15%  Similarity=0.090  Sum_probs=35.1

Q ss_pred             ccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            8 EGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         8 ~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      +.-|+..|.++|.|+.|||+.+|+  ++.  .+.+-|+.|...|
T Consensus        21 R~~Il~~L~~~~~s~~ela~~lg~--s~~--~v~~hl~~L~~~g   60 (190)
T d1ulya_          21 RRKILKLLRNKEMTISQLSEILGK--TPQ--TIYHHIEKLKEAG   60 (190)
T ss_dssp             HHHHHHHHTTCCBCHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            445777888899999999999999  665  8999999999999

>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: Mlc protein N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.63  E-value=0.051  Score=32.32  Aligned_cols=37  Identities=8%  Similarity=0.003  Sum_probs=30.8

Q ss_pred             cccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           11 KKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        11 lf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      |+..|. .+++|-.|||+.+|+  +..  .+.++++-|...|
T Consensus        10 Il~~i~~~g~~sr~eLa~~~gL--S~~--Tvs~iv~~L~~~g   47 (70)
T d1z6ra1          10 VYRLIDQLGPVSRIDLSRLAQL--APA--SITKIVHEMLEAH   47 (70)
T ss_dssp             HHHHHHSSCSCCHHHHHHHTTC--CHH--HHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCcCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            555564 499999999999999  655  8999999998877

>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: C-terminal fragment of elongation factor SelB
domain: C-terminal fragment of elongation factor SelB
species: Moorella thermoacetica [TaxId: 1525]

Probab=88.20  E-value=0.14  Score=29.79  Aligned_cols=30  Identities=23%  Similarity=0.324  Sum_probs=27.5

Q ss_pred             CCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           18 TPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        18 g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      .|-++.|||+.+|+  ++.  .++.+|+.|+..|
T Consensus        22 ~PP~vrdl~~~l~~--~e~--~~~~lL~~l~~~G   51 (64)
T d1lvaa3          22 QPPSFKEVAGSFNL--DPS--ELEELLHYLVREG   51 (64)
T ss_dssp             SCCBHHHHHHHTTC--CHH--HHHHHHHHHHHTT
T ss_pred             CCCcHHHHHHHhCC--CHH--HHHHHHHHHHHCC
Confidence            68999999999999  766  8999999999988

>d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator Rrf2
domain: Hypothetical protein ywnA
species: Bacillus subtilis [TaxId: 1423]

Probab=87.71  E-value=0.16  Score=33.61  Aligned_cols=31  Identities=16%  Similarity=0.209  Sum_probs=28.6

Q ss_pred             CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           17 NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        17 ~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      +++.|.++||+.+++  +|.  .++++|+.|...|
T Consensus        16 ~~~~ss~~IA~~~~~--~~~--~v~kIl~~L~~ag   46 (127)
T d1xd7a_          16 DEKTSSEIIADSVNT--NPV--VVRRMISLLKKAD   46 (127)
T ss_dssp             CSCCCHHHHHHHHTS--CHH--HHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHhCc--CHH--HHHHHHHHHHHhC
Confidence            478999999999999  776  9999999999998

>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: TrmB-like
domain: Hypothetical protein AF2008
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.40  E-value=0.065  Score=34.63  Aligned_cols=37  Identities=16%  Similarity=0.123  Sum_probs=30.6

Q ss_pred             cccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           11 KKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        11 lf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      +...|. .|+.|+.+||+.+|+  +..  .+.+.|+-|...|
T Consensus        25 v~~~L~~~g~~t~~eia~~~~i--~~~--~v~~~l~~L~~~G   62 (109)
T d1sfxa_          25 IYSLLLERGGMRVSEIARELDL--SAR--FVRDRLKVLLKRG   62 (109)
T ss_dssp             HHHHHHHHCCBCHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred             HHHHHHhcCCCCHHHHHHHhCC--Ccc--hHHHHHHHHHhCC
Confidence            444554 389999999999999  665  8999999999999

>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ArsR-like transcriptional regulators
domain: SmtB repressor
species: Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]

Probab=87.32  E-value=0.13  Score=32.60  Aligned_cols=41  Identities=17%  Similarity=0.090  Sum_probs=32.3

Q ss_pred             hccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            7 REGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         7 ~~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      .++.|...|.+++.|+.|||+.+|+  ++.  .+.+=|+.|...|
T Consensus        24 ~Rl~Il~~L~~~~~~v~ela~~l~i--s~s--tvS~HL~~L~~ag   64 (98)
T d1r1ta_          24 NRLRLLSLLARSELCVGDLAQAIGV--SES--AVSHQLRSLRNLR   64 (98)
T ss_dssp             HHHHHHHHHTTCCBCHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCcCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            3456677777888999999999999  554  7777788888887

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=86.41  E-value=0.28  Score=39.11  Aligned_cols=77  Identities=19%  Similarity=0.145  Sum_probs=50.2

Q ss_pred             HHHHhhhCCCCCCcceEEEecCCccHHHHHHHHHCCC-------------CCeeeeccc-hHHHhcCCC--------CCC
Q 037818          120 ITSVLDGYNGFKGVKQLVDVGGSAGDCLRMILQKHRF-------------ICEGINFDL-PEVVGEAPS--------ILG  177 (199)
Q Consensus       120 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~-------------l~~~~v~Dl-p~v~~~a~~--------~~r  177 (199)
                      +.-+++.++ -....+|+|-.||+|.++.++.++...             .. ...+|. |.....++.        .+.
T Consensus       151 v~~mv~ll~-~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~-l~g~E~~~~~~~la~~n~~l~g~~~~~  228 (425)
T d2okca1         151 IQAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKA-LHGVDNTPLVVTLASMNLYLHGIGTDR  228 (425)
T ss_dssp             HHHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTT-EEEEESCHHHHHHHHHHHHHTTCCSSC
T ss_pred             hHhhheecc-CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhh-hhhhhccHHHHHHHHhhhhhcCCcccc
Confidence            344455544 344579999999999999988875432             23 456665 444444431        256


Q ss_pred             ceEEeCCCCCCCCc--ccEEEec
Q 037818          178 VTHIGGDTFKSIPA--ADAIFMK  198 (199)
Q Consensus       178 i~~~~gd~f~~~P~--aD~~~l~  198 (199)
                      +....+|+++..+.  .|+++.+
T Consensus       229 ~~i~~~d~l~~~~~~~fD~Ii~N  251 (425)
T d2okca1         229 SPIVCEDSLEKEPSTLVDVILAN  251 (425)
T ss_dssp             CSEEECCTTTSCCSSCEEEEEEC
T ss_pred             ceeecCchhhhhcccccceEEec
Confidence            77888999975444  4988764

>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DNA-binding protein Mj223
domain: DNA-binding protein Mj223
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=84.64  E-value=0.18  Score=33.96  Aligned_cols=32  Identities=25%  Similarity=0.429  Sum_probs=29.1

Q ss_pred             CCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           16 ANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        16 ~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      .++|+|+.|||+.+|+  +..  .+.+.++-|...|
T Consensus        38 ~~~plt~~ela~~l~v--sk~--~vs~~l~~L~~~G   69 (151)
T d1ku9a_          38 SDKPLTISDIMEELKI--SKG--NVSMSLKKLEELG   69 (151)
T ss_dssp             CSSCEEHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred             CCCCcCHHHHHHHhCC--Ccc--hHHHHHHHHHHCC
Confidence            5678999999999999  655  9999999999999

>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: TrmB-like
domain: Hypothetical transcriptional regulator ST1889
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=84.52  E-value=0.2  Score=31.99  Aligned_cols=38  Identities=11%  Similarity=0.287  Sum_probs=31.2

Q ss_pred             ccccccC--CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           10 GKKVRLA--NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        10 glf~~L~--~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      -|+..|.  .+|.|+.+||+.+++  ++.  .+.+.|+-|...|
T Consensus        25 ~iL~~L~~~~~~~t~~eLa~~~~i--~~~--tvs~~l~~L~~~G   64 (109)
T d2d1ha1          25 AVLLKMVEIEKPITSEELADIFKL--SKT--TVENSLKKLIELG   64 (109)
T ss_dssp             HHHHHHHHHCSCEEHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHCc--cHh--HHHHHHHHHHHCC
Confidence            3454552  578999999999999  665  8999999999998

>d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ArsR-like transcriptional regulators
domain: Metal-sensing transcriptional repressor CzrA
species: Staphylococcus aureus [TaxId: 1280]

Probab=83.41  E-value=0.14  Score=32.28  Aligned_cols=41  Identities=20%  Similarity=0.114  Sum_probs=32.2

Q ss_pred             hccccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            7 REGGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         7 ~~lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      .++.|+..|.+++.++.|||+.+|+  ++.  .+.+=|+.|...|
T Consensus        19 ~Rl~Il~~L~~~~~~v~el~~~l~~--s~~--~vS~HL~~L~~~g   59 (94)
T d1r1ua_          19 NRIRIMELLSVSEASVGHISHQLNL--SQS--NVSHQLKLLKSVH   59 (94)
T ss_dssp             HHHHHHHHHHHCCBCHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCccHHHHHHHHCC--CHH--HHHHHHHHHHHCC
Confidence            3455667777789999999999999  554  7788888888888

>d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator Rrf2
domain: Hypothetical protein BC1842
species: Bacillus cereus [TaxId: 1396]

Probab=82.88  E-value=0.26  Score=32.98  Aligned_cols=31  Identities=10%  Similarity=0.206  Sum_probs=28.4

Q ss_pred             CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818           17 NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus        17 ~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      +.+.|.++||+.+++  ++.  .++++|..|...|
T Consensus        21 ~~~vss~~IA~~~~i--~~~--~l~kil~~L~~aG   51 (138)
T d1ylfa1          21 SSLCTSDYMAESVNT--NPV--VIRKIMSYLKQAG   51 (138)
T ss_dssp             GGGCCHHHHHHHHTS--CHH--HHHHHHHHHHHTT
T ss_pred             CCcCcHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            467999999999999  776  9999999999999

>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Putative transcriptional regulator PH1519
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=81.75  E-value=0.19  Score=28.66  Aligned_cols=41  Identities=12%  Similarity=0.018  Sum_probs=29.2

Q ss_pred             hccccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            7 REGGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         7 ~~lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      ++..+...|. ++..|..+||+++|+  ++.  .+.+=++-|...|
T Consensus         4 ~D~~Il~~L~~n~r~s~~eiA~~l~l--s~~--~v~~Ri~~L~~~g   45 (60)
T d2cyya1           4 IDKKIIKILQNDGKAPLREISKITGL--AES--TIHERIRKLRESG   45 (60)
T ss_dssp             HHHHHHHHHHHCTTCCHHHHHHHHCS--CHH--HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            3445566665 478999999999999  665  5666666665554

>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Hypothetical protein PH1061
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=81.43  E-value=0.099  Score=32.99  Aligned_cols=40  Identities=25%  Similarity=0.194  Sum_probs=34.0

Q ss_pred             ccccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            8 EGGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         8 ~lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      ++.|...|. .++.|+.|||+.+++  ++.  .+.+.|+.|...|
T Consensus        18 r~~IL~~L~~~~~~~~~eLa~~l~i--s~~--~vs~~l~~L~~~g   58 (100)
T d1ub9a_          18 RLGIMIFLLPRRKAPFSQIQKVLDL--TPG--NLDSHIRVLERNG   58 (100)
T ss_dssp             HHHHHHHHHHHSEEEHHHHHHHTTC--CHH--HHHHHHHHHHHTT
T ss_pred             HHHHHHHhccCCCeeHHHHHHHHhh--ccc--cccHHHHHHhhhc
Confidence            456677775 489999999999999  665  8999999999999

>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Transcriptional regulator LrpC
species: Bacillus subtilis [TaxId: 1423]

Probab=80.69  E-value=0.29  Score=28.17  Aligned_cols=41  Identities=20%  Similarity=0.214  Sum_probs=30.6

Q ss_pred             hccccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            7 REGGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         7 ~~lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      ++..+...|. ++..|..+||+.+|+  ++.  .+.+=++-|...|
T Consensus         6 ~D~~IL~~L~~n~r~s~~~iA~~lgi--s~~--tv~~Ri~~L~~~g   47 (63)
T d2cfxa1           6 IDLNIIEELKKDSRLSMRELGRKIKL--SPP--SVTERVRQLESFG   47 (63)
T ss_dssp             HHHHHHHHHHHCSCCCHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            3455666675 588999999999999  665  6666677776665

>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: LprA
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=80.38  E-value=0.22  Score=28.41  Aligned_cols=39  Identities=10%  Similarity=0.072  Sum_probs=27.3

Q ss_pred             cccccccC-CCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            9 GGKKVRLA-NTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         9 lglf~~L~-~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      .-|...|. ++..|..+||+++|+  ++.  .+.+=++.|...|
T Consensus         6 ~kIl~~L~~n~r~s~~~lA~~~gl--s~~--~v~~Ri~~L~~~g   45 (60)
T d1i1ga1           6 KIILEILEKDARTPFTEIAKKLGI--SET--AVRKRVKALEEKG   45 (60)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHTS--CHH--HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            33445554 588999999999999  665  5666566665554

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=80.22  E-value=1.1  Score=32.64  Aligned_cols=55  Identities=16%  Similarity=0.109  Sum_probs=37.4

Q ss_pred             CcceEEEecCCccHHHHHH---HH-HCCCCCeeeeccch-HHHhcC-CCCCCceEEeCCCCC
Q 037818          132 GVKQLVDVGGSAGDCLRMI---LQ-KHRFICEGINFDLP-EVVGEA-PSILGVTHIGGDTFK  187 (199)
Q Consensus       132 ~~~~vvDvGGG~G~~~~~l---~~-~~P~l~~~~v~Dlp-~v~~~a-~~~~ri~~~~gd~f~  187 (199)
                      ++++||.||.++|.-+.-+   ++ ..++.+ .+.+|.. ...... ...+||++..||..+
T Consensus        80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~k-I~giDId~~~~~~~~~~~~~I~~i~gDs~~  140 (232)
T d2bm8a1          80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQ-VIGIDRDLSRCQIPASDMENITLHQGDCSD  140 (232)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCE-EEEEESCCTTCCCCGGGCTTEEEEECCSSC
T ss_pred             CCCEEEEECCCCchHHHHHHHHHHhcCCCce-EEecCcChhhhhhhhccccceeeeeccccc
Confidence            3579999999999754433   33 457778 8999973 222222 224899999999764

>d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PF1790-like
domain: Transcriptional regulatory protein PF1790
species: Pyrococcus furiosus [TaxId: 2261]

Probab=80.21  E-value=0.14  Score=36.49  Aligned_cols=39  Identities=18%  Similarity=0.181  Sum_probs=33.7

Q ss_pred             cccccccCCCCCCHHHHHHHcCCCCCCCcchHHHHHHHHhhCC
Q 037818            9 GGKKVRLANTPLSASQILTRILPSGDGDAENLQRILRLLTSYG   51 (199)
Q Consensus         9 lglf~~L~~g~~t~~eLA~~~~~~~~~~~~~l~rlL~~l~~~g   51 (199)
                      ..|...|.++|.|+.|||+.+|+  ++.  .+.+=|+.|...|
T Consensus        18 ~~Il~~L~~~~~~~~ela~~l~~--s~~--~v~~HL~~L~~~G   56 (194)
T d2p4wa1          18 RRILFLLTKRPYFVSELSRELGV--GQK--AVLEHLRILEEAG   56 (194)
T ss_dssp             HHHHHHHHHSCEEHHHHHHHHTC--CHH--HHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCCCHHHHHHHHCc--CHH--HHHHHHHHHHHCC
Confidence            44666777799999999999999  665  8999999999999